Query 001363
Match_columns 1092
No_of_seqs 898 out of 5040
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 22:53:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 3.3E-72 7.1E-77 555.3 34.0 493 5-653 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 3.3E-62 7.1E-67 468.5 30.3 493 3-650 5-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 1.4E-59 3E-64 500.3 48.8 576 340-1009 25-620 (775)
4 KOG0319 WD40-repeat-containing 100.0 1.6E-56 3.4E-61 476.9 44.8 586 295-966 22-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 2.7E-52 5.9E-57 427.1 62.2 575 338-1008 22-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 7E-51 1.5E-55 433.6 64.7 612 297-1060 19-708 (893)
7 KOG0318 WD40 repeat stress pro 100.0 1.2E-49 2.7E-54 407.6 59.1 542 326-965 51-602 (603)
8 KOG0306 WD40-repeat-containing 100.0 1.1E-48 2.5E-53 416.5 52.3 575 336-1012 23-668 (888)
9 KOG0306 WD40-repeat-containing 100.0 1.1E-48 2.4E-53 416.6 49.6 504 334-967 65-666 (888)
10 KOG0271 Notchless-like WD40 re 100.0 1.6E-50 3.4E-55 397.6 28.7 333 324-714 105-479 (480)
11 KOG0271 Notchless-like WD40 re 100.0 1.2E-49 2.7E-54 391.3 29.0 367 392-914 111-479 (480)
12 KOG0291 WD40-repeat-containing 100.0 6.4E-45 1.4E-49 388.2 62.3 539 401-1063 19-614 (893)
13 KOG1408 WD40 repeat protein [F 100.0 1.5E-41 3.3E-46 358.7 40.9 624 338-1062 41-714 (1080)
14 KOG1408 WD40 repeat protein [F 100.0 1.3E-40 2.8E-45 351.7 41.5 509 328-917 72-714 (1080)
15 KOG1063 RNA polymerase II elon 100.0 3.9E-39 8.4E-44 341.5 48.4 643 340-1061 20-763 (764)
16 KOG0273 Beta-transducin family 100.0 3.2E-40 7E-45 334.4 36.2 345 322-763 167-522 (524)
17 KOG1063 RNA polymerase II elon 100.0 3.1E-39 6.6E-44 342.3 44.3 623 326-1008 46-763 (764)
18 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-41 5E-46 338.3 23.2 284 331-650 172-458 (459)
19 KOG1539 WD repeat protein [Gen 100.0 7.6E-37 1.7E-41 330.8 56.9 580 340-1059 39-646 (910)
20 KOG0276 Vesicle coat complex C 100.0 2.9E-38 6.3E-43 330.1 42.6 479 328-965 7-490 (794)
21 KOG0279 G protein beta subunit 100.0 2.3E-39 5E-44 306.9 31.0 299 325-652 6-313 (315)
22 KOG0272 U4/U6 small nuclear ri 100.0 9.7E-41 2.1E-45 333.9 22.5 285 394-714 173-458 (459)
23 KOG0286 G-protein beta subunit 100.0 1.4E-38 3E-43 303.3 34.0 294 326-650 47-343 (343)
24 KOG1539 WD repeat protein [Gen 100.0 9E-36 2E-40 322.5 51.2 546 331-965 73-648 (910)
25 KOG0286 G-protein beta subunit 100.0 5.3E-37 1.2E-41 292.5 32.3 287 391-714 50-343 (343)
26 KOG0315 G-protein beta subunit 100.0 8.4E-37 1.8E-41 284.2 31.7 293 347-673 10-309 (311)
27 KOG0263 Transcription initiati 100.0 1.7E-36 3.7E-41 328.7 34.4 278 319-611 363-652 (707)
28 KOG0279 G protein beta subunit 100.0 8E-36 1.7E-40 283.0 32.1 296 731-1061 12-313 (315)
29 KOG0276 Vesicle coat complex C 100.0 1.4E-34 2.9E-39 302.8 44.4 465 392-1007 9-489 (794)
30 KOG0292 Vesicle coat complex C 100.0 2.4E-34 5.3E-39 311.9 47.7 584 331-1012 6-598 (1202)
31 KOG0295 WD40 repeat-containing 100.0 2.6E-36 5.6E-41 296.5 25.5 292 325-651 99-405 (406)
32 KOG2106 Uncharacterized conser 100.0 8.7E-33 1.9E-37 282.3 50.7 538 324-1007 56-625 (626)
33 KOG0296 Angio-associated migra 100.0 5E-35 1.1E-39 287.8 31.2 335 324-715 54-397 (399)
34 KOG0296 Angio-associated migra 100.0 2E-34 4.3E-39 283.6 34.5 339 436-916 59-398 (399)
35 KOG0285 Pleiotropic regulator 100.0 2E-35 4.4E-40 288.7 26.4 299 320-654 137-441 (460)
36 KOG0315 G-protein beta subunit 100.0 3.5E-34 7.5E-39 266.8 31.3 295 500-895 11-309 (311)
37 KOG0645 WD40 repeat protein [G 100.0 1.3E-33 2.8E-38 266.8 32.5 292 326-652 6-311 (312)
38 KOG0292 Vesicle coat complex C 100.0 3.7E-32 8.1E-37 295.1 44.2 500 392-1008 5-518 (1202)
39 KOG2106 Uncharacterized conser 100.0 3.4E-31 7.3E-36 270.8 48.3 523 401-1060 70-625 (626)
40 KOG0273 Beta-transducin family 100.0 1.4E-33 3.1E-38 286.4 30.1 279 335-652 236-523 (524)
41 KOG2048 WD40 repeat protein [G 100.0 4.2E-30 9.2E-35 273.1 56.7 550 396-1061 25-601 (691)
42 KOG0265 U5 snRNP-specific prot 100.0 2E-33 4.4E-38 269.4 27.7 290 328-649 41-335 (338)
43 KOG0265 U5 snRNP-specific prot 100.0 3.7E-33 8E-38 267.6 27.6 286 392-712 43-334 (338)
44 KOG0316 Conserved WD40 repeat- 100.0 2.2E-33 4.7E-38 259.1 24.9 292 321-650 4-297 (307)
45 KOG0295 WD40 repeat-containing 100.0 2.2E-33 4.9E-38 275.9 23.5 285 392-714 104-404 (406)
46 KOG0266 WD40 repeat-containing 100.0 1.3E-32 2.8E-37 312.2 33.0 294 327-652 151-454 (456)
47 KOG0284 Polyadenylation factor 100.0 5.8E-34 1.3E-38 283.9 17.9 286 331-652 93-380 (464)
48 KOG0285 Pleiotropic regulator 100.0 1.3E-32 2.8E-37 269.2 26.7 294 391-764 146-439 (460)
49 KOG0293 WD40 repeat-containing 100.0 5E-33 1.1E-37 277.1 22.7 292 391-716 219-513 (519)
50 KOG0282 mRNA splicing factor [ 100.0 1.4E-33 3E-38 287.9 17.2 295 322-650 202-503 (503)
51 KOG0645 WD40 repeat protein [G 100.0 3.6E-31 7.8E-36 250.3 31.8 293 731-1061 11-311 (312)
52 KOG2048 WD40 repeat protein [G 100.0 1.2E-28 2.7E-33 262.1 52.8 504 440-1064 24-551 (691)
53 KOG0263 Transcription initiati 100.0 2E-32 4.4E-37 297.1 23.8 264 733-1010 377-651 (707)
54 cd00200 WD40 WD40 domain, foun 100.0 1.6E-30 3.4E-35 283.5 36.4 287 328-650 3-289 (289)
55 KOG0281 Beta-TrCP (transducin 100.0 5.7E-33 1.2E-37 270.2 14.9 276 333-656 196-481 (499)
56 KOG0284 Polyadenylation factor 100.0 3.3E-32 7.1E-37 271.5 18.4 280 623-1007 97-379 (464)
57 KOG0266 WD40 repeat-containing 100.0 3E-30 6.4E-35 292.9 32.4 291 394-716 157-454 (456)
58 KOG1445 Tumor-specific antigen 100.0 9.5E-30 2E-34 266.2 33.0 697 325-1074 70-857 (1012)
59 KOG0282 mRNA splicing factor [ 100.0 1.7E-31 3.6E-36 272.8 18.0 290 391-714 209-503 (503)
60 KOG0316 Conserved WD40 repeat- 100.0 2.8E-30 6.1E-35 238.6 23.5 270 391-678 12-284 (307)
61 KOG0278 Serine/threonine kinas 100.0 5.5E-31 1.2E-35 245.3 18.5 291 328-657 8-302 (334)
62 KOG0281 Beta-TrCP (transducin 100.0 1.9E-31 4.2E-36 259.5 14.4 277 395-723 196-484 (499)
63 PLN00181 protein SPA1-RELATED; 100.0 8.1E-29 1.7E-33 304.2 39.5 294 330-651 479-792 (793)
64 cd00200 WD40 WD40 domain, foun 100.0 2.8E-28 6.1E-33 265.7 35.5 285 392-714 5-289 (289)
65 KOG0275 Conserved WD40 repeat- 100.0 3.8E-30 8.3E-35 248.1 17.5 290 733-1059 212-507 (508)
66 KOG0288 WD40 repeat protein Ti 100.0 4.5E-30 9.8E-35 256.8 17.8 297 320-649 161-458 (459)
67 KOG0310 Conserved WD40 repeat- 100.0 7.2E-29 1.6E-33 254.3 26.3 287 329-652 22-309 (487)
68 KOG0640 mRNA cleavage stimulat 100.0 3.1E-28 6.7E-33 234.0 27.7 316 324-652 102-426 (430)
69 PLN00181 protein SPA1-RELATED; 100.0 1.7E-27 3.6E-32 292.7 40.9 322 356-763 457-792 (793)
70 KOG0973 Histone transcription 100.0 1.7E-28 3.6E-33 276.3 28.9 307 332-654 11-357 (942)
71 KOG1407 WD40 repeat protein [F 100.0 8.9E-28 1.9E-32 226.0 27.0 279 328-643 14-293 (313)
72 KOG0278 Serine/threonine kinas 100.0 5.1E-29 1.1E-33 232.3 16.9 287 391-719 9-300 (334)
73 KOG0643 Translation initiation 100.0 2.3E-27 4.9E-32 223.9 27.4 287 329-653 5-318 (327)
74 KOG1446 Histone H3 (Lys4) meth 100.0 2.3E-26 4.9E-31 224.1 34.3 287 330-652 10-303 (311)
75 KOG0643 Translation initiation 100.0 3.7E-27 7.9E-32 222.5 27.6 286 391-716 5-317 (327)
76 KOG0313 Microtubule binding pr 100.0 1.7E-27 3.7E-32 236.0 26.5 282 332-652 103-418 (423)
77 KOG0283 WD40 repeat-containing 100.0 6.4E-28 1.4E-32 265.0 25.3 310 325-654 257-578 (712)
78 KOG0641 WD40 repeat protein [G 100.0 3.3E-26 7.1E-31 210.0 32.1 308 325-652 24-349 (350)
79 KOG0640 mRNA cleavage stimulat 100.0 7.6E-28 1.7E-32 231.3 21.4 306 622-1007 112-425 (430)
80 PTZ00421 coronin; Provisional 100.0 3.7E-26 7.9E-31 257.2 35.9 289 333-634 19-315 (493)
81 KOG0274 Cdc4 and related F-box 100.0 9.1E-27 2E-31 261.6 29.7 284 332-660 206-490 (537)
82 KOG0772 Uncharacterized conser 100.0 4.2E-27 9.1E-32 241.6 23.1 309 319-652 152-487 (641)
83 KOG0973 Histone transcription 100.0 1.5E-26 3.3E-31 260.6 28.5 305 733-1065 12-359 (942)
84 KOG0310 Conserved WD40 repeat- 100.0 1.7E-26 3.7E-31 236.9 25.7 282 733-1060 25-308 (487)
85 KOG0305 Anaphase promoting com 100.0 3.6E-26 7.8E-31 245.6 28.3 279 337-654 180-463 (484)
86 KOG0313 Microtubule binding pr 100.0 3.2E-26 6.9E-31 227.0 25.2 280 394-715 103-417 (423)
87 KOG1446 Histone H3 (Lys4) meth 99.9 6.3E-25 1.4E-29 214.1 33.2 273 392-677 10-288 (311)
88 KOG0647 mRNA export protein (c 99.9 9.3E-26 2E-30 217.1 26.6 276 333-641 26-312 (347)
89 KOG0283 WD40 repeat-containing 99.9 3.9E-26 8.4E-31 251.0 27.0 277 732-1011 265-579 (712)
90 KOG2096 WD40 repeat protein [G 99.9 9.4E-26 2E-30 218.0 25.8 313 657-1010 79-404 (420)
91 PTZ00420 coronin; Provisional 99.9 6.8E-25 1.5E-29 247.2 37.1 237 392-634 70-318 (568)
92 KOG0300 WD40 repeat-containing 99.9 2.8E-26 6E-31 221.0 21.7 297 325-654 139-478 (481)
93 KOG1407 WD40 repeat protein [F 99.9 2E-25 4.4E-30 210.2 26.8 253 392-659 16-268 (313)
94 KOG0299 U3 snoRNP-associated p 99.9 7.8E-26 1.7E-30 230.1 25.7 293 327-641 135-444 (479)
95 KOG0641 WD40 repeat protein [G 99.9 1.3E-24 2.8E-29 199.5 30.2 308 733-1061 31-349 (350)
96 KOG0277 Peroxisomal targeting 99.9 5.6E-26 1.2E-30 213.0 21.7 285 337-651 11-308 (311)
97 KOG0772 Uncharacterized conser 99.9 8.3E-26 1.8E-30 232.1 24.7 297 732-1064 165-491 (641)
98 KOG0301 Phospholipase A2-activ 99.9 1.6E-25 3.4E-30 238.9 27.6 284 325-654 5-290 (745)
99 KOG0288 WD40 repeat protein Ti 99.9 1.1E-26 2.5E-31 232.6 17.6 285 392-714 171-459 (459)
100 KOG0308 Conserved WD40 repeat- 99.9 3.5E-26 7.5E-31 241.8 21.9 353 332-716 19-393 (735)
101 KOG1963 WD40 repeat protein [G 99.9 1.9E-23 4.1E-28 230.5 43.2 567 392-1064 12-653 (792)
102 PTZ00421 coronin; Provisional 99.9 1.5E-24 3.2E-29 244.2 33.7 270 395-674 19-313 (493)
103 KOG0294 WD40 repeat-containing 99.9 1.5E-24 3.2E-29 210.1 28.2 241 799-1063 40-283 (362)
104 KOG1445 Tumor-specific antigen 99.9 1.3E-23 2.7E-28 220.6 37.0 216 391-612 74-297 (1012)
105 KOG0299 U3 snoRNP-associated p 99.9 6.4E-25 1.4E-29 223.5 26.3 250 392-654 138-412 (479)
106 KOG0274 Cdc4 and related F-box 99.9 4.5E-25 9.8E-30 248.0 27.7 279 395-721 207-487 (537)
107 KOG0268 Sof1-like rRNA process 99.9 2.6E-26 5.7E-31 225.9 15.3 293 324-656 56-349 (433)
108 KOG0308 Conserved WD40 repeat- 99.9 1.1E-25 2.4E-30 238.1 20.9 248 395-654 20-287 (735)
109 KOG0289 mRNA splicing factor [ 99.9 3.4E-24 7.4E-29 216.0 28.1 285 334-651 219-505 (506)
110 KOG0647 mRNA export protein (c 99.9 2.1E-24 4.6E-29 207.8 24.3 274 392-678 23-307 (347)
111 KOG0277 Peroxisomal targeting 99.9 9.7E-25 2.1E-29 204.8 21.4 200 801-1007 103-308 (311)
112 KOG0289 mRNA splicing factor [ 99.9 4.6E-24 9.9E-29 215.1 25.4 281 397-714 220-504 (506)
113 KOG0305 Anaphase promoting com 99.9 2.5E-24 5.4E-29 231.4 25.2 275 400-717 181-462 (484)
114 KOG1036 Mitotic spindle checkp 99.9 1.6E-23 3.5E-28 203.0 27.1 272 334-642 13-294 (323)
115 KOG0268 Sof1-like rRNA process 99.9 4E-25 8.6E-30 217.7 16.1 284 436-765 61-346 (433)
116 KOG1274 WD40 repeat protein [G 99.9 7.9E-21 1.7E-25 209.9 51.3 279 331-649 10-297 (933)
117 KOG0294 WD40 repeat-containing 99.9 2.6E-23 5.7E-28 201.5 27.9 243 392-654 39-283 (362)
118 KOG0300 WD40 repeat-containing 99.9 6.1E-24 1.3E-28 205.0 23.0 323 620-1010 146-478 (481)
119 KOG1332 Vesicle coat complex C 99.9 1.4E-24 3E-29 202.5 17.6 252 391-652 6-286 (299)
120 PTZ00420 coronin; Provisional 99.9 1.1E-22 2.5E-27 229.3 36.3 248 414-675 50-317 (568)
121 KOG2096 WD40 repeat protein [G 99.9 3.2E-23 6.9E-28 200.6 25.9 298 326-652 78-402 (420)
122 KOG0301 Phospholipase A2-activ 99.9 1.6E-23 3.4E-28 223.7 24.4 275 731-1061 11-288 (745)
123 KOG1963 WD40 repeat protein [G 99.9 4E-21 8.6E-26 212.3 43.1 516 437-1067 12-589 (792)
124 KOG1274 WD40 repeat protein [G 99.9 6.1E-20 1.3E-24 203.0 51.0 276 393-685 10-291 (933)
125 KOG0639 Transducin-like enhanc 99.9 2.2E-23 4.8E-28 213.3 20.4 287 332-651 417-703 (705)
126 KOG0639 Transducin-like enhanc 99.9 4.4E-23 9.5E-28 211.2 20.9 283 732-1060 417-703 (705)
127 KOG1332 Vesicle coat complex C 99.9 4.1E-23 8.9E-28 192.8 18.9 256 328-608 5-286 (299)
128 KOG0264 Nucleosome remodeling 99.9 5.1E-23 1.1E-27 210.3 21.1 263 331-608 121-404 (422)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.3E-21 1.1E-25 209.9 37.8 289 349-673 3-299 (300)
130 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.3E-21 2E-25 208.0 39.6 279 591-1017 2-288 (300)
131 KOG2055 WD40 repeat protein [G 99.9 3.2E-22 6.9E-27 203.7 25.2 289 578-1008 213-512 (514)
132 KOG2055 WD40 repeat protein [G 99.9 2.5E-22 5.3E-27 204.5 24.3 288 334-652 213-512 (514)
133 KOG0646 WD40 repeat protein [G 99.9 3E-22 6.4E-27 204.7 24.2 293 349-676 9-331 (476)
134 KOG4283 Transcription-coupled 99.9 7.6E-22 1.7E-26 189.0 25.2 320 330-715 39-364 (397)
135 KOG1273 WD40 repeat protein [G 99.9 4.8E-22 1E-26 192.3 24.0 300 321-654 12-324 (405)
136 KOG1036 Mitotic spindle checkp 99.9 2.3E-21 5E-26 188.2 26.0 270 395-682 12-292 (323)
137 KOG1273 WD40 repeat protein [G 99.9 7.3E-22 1.6E-26 191.1 22.3 282 399-716 26-322 (405)
138 KOG4328 WD40 protein [Function 99.9 1.8E-21 3.8E-26 198.3 24.5 305 325-652 177-495 (498)
139 KOG4283 Transcription-coupled 99.9 4.2E-21 9.2E-26 184.0 25.5 305 732-1060 41-364 (397)
140 KOG1538 Uncharacterized conser 99.9 9.2E-21 2E-25 200.4 30.6 450 443-961 14-520 (1081)
141 KOG0646 WD40 repeat protein [G 99.9 1.4E-21 3E-26 199.9 23.5 225 396-633 81-330 (476)
142 KOG0264 Nucleosome remodeling 99.9 2.2E-21 4.8E-26 198.4 23.3 253 392-653 120-405 (422)
143 KOG0650 WD40 repeat nucleolar 99.9 2.3E-21 5E-26 203.3 23.7 322 318-713 384-732 (733)
144 KOG1538 Uncharacterized conser 99.9 7E-20 1.5E-24 193.9 34.6 273 336-653 14-294 (1081)
145 KOG0267 Microtubule severing p 99.9 7.6E-23 1.6E-27 219.2 10.3 236 392-643 24-259 (825)
146 KOG0269 WD40 repeat-containing 99.9 5.4E-21 1.2E-25 206.9 19.8 244 739-1012 92-344 (839)
147 KOG0650 WD40 repeat nucleolar 99.9 1.5E-20 3.2E-25 197.3 22.4 321 568-962 393-732 (733)
148 KOG1009 Chromatin assembly com 99.9 6.7E-20 1.4E-24 184.3 24.5 308 329-656 9-376 (434)
149 KOG0269 WD40 repeat-containing 99.9 1.5E-20 3.3E-25 203.5 18.8 284 397-712 40-336 (839)
150 KOG0321 WD40 repeat-containing 99.8 9.8E-20 2.1E-24 193.0 23.3 286 747-1061 65-391 (720)
151 KOG0267 Microtubule severing p 99.8 2E-21 4.3E-26 208.5 10.7 239 328-600 22-260 (825)
152 KOG2445 Nuclear pore complex c 99.8 4.4E-19 9.5E-24 171.8 25.2 268 331-619 10-332 (361)
153 KOG2445 Nuclear pore complex c 99.8 5.5E-19 1.2E-23 171.1 24.9 256 392-653 9-319 (361)
154 KOG0321 WD40 repeat-containing 99.8 1.2E-19 2.7E-24 192.2 22.1 287 344-654 61-393 (720)
155 KOG1034 Transcriptional repres 99.8 5.8E-19 1.3E-23 172.5 25.0 299 733-1061 37-383 (385)
156 KOG1034 Transcriptional repres 99.8 4.2E-19 9E-24 173.5 23.8 298 328-652 32-383 (385)
157 KOG0270 WD40 repeat-containing 99.8 8.5E-20 1.8E-24 185.7 19.3 252 399-658 176-455 (463)
158 COG2319 FOG: WD40 repeat [Gene 99.8 6.8E-17 1.5E-21 188.1 45.2 371 329-765 60-443 (466)
159 COG2319 FOG: WD40 repeat [Gene 99.8 2E-16 4.4E-21 184.1 48.9 372 437-917 61-443 (466)
160 KOG0307 Vesicle coat complex C 99.8 2.3E-20 5E-25 212.0 14.8 296 337-654 9-329 (1049)
161 KOG4378 Nuclear protein COP1 [ 99.8 7.4E-19 1.6E-23 180.3 22.9 293 594-990 6-305 (673)
162 KOG4328 WD40 protein [Function 99.8 7.3E-19 1.6E-23 179.4 21.5 306 654-1009 176-496 (498)
163 KOG4378 Nuclear protein COP1 [ 99.8 1.4E-18 3E-23 178.3 22.2 293 350-676 7-305 (673)
164 KOG1912 WD40 repeat protein [G 99.8 5.4E-17 1.2E-21 175.6 35.0 604 335-1012 16-745 (1062)
165 KOG4497 Uncharacterized conser 99.8 2.9E-18 6.4E-23 167.2 22.5 409 401-909 13-425 (447)
166 KOG0302 Ribosome Assembly prot 99.8 2.6E-18 5.7E-23 170.9 21.5 264 329-605 146-435 (440)
167 KOG0302 Ribosome Assembly prot 99.8 3.9E-18 8.4E-23 169.7 21.2 250 800-1056 149-434 (440)
168 KOG0303 Actin-binding protein 99.8 4.8E-18 1E-22 170.0 21.5 237 391-633 76-320 (472)
169 KOG2919 Guanine nucleotide-bin 99.8 1.1E-17 2.5E-22 163.0 22.8 289 338-643 53-361 (406)
170 KOG1009 Chromatin assembly com 99.8 3.4E-17 7.3E-22 165.1 26.7 300 734-1061 13-372 (434)
171 KOG2919 Guanine nucleotide-bin 99.8 1.2E-17 2.6E-22 162.8 22.0 190 805-999 161-361 (406)
172 KOG1524 WD40 repeat-containing 99.8 2E-16 4.3E-21 164.3 30.7 498 394-1064 12-526 (737)
173 KOG1912 WD40 repeat protein [G 99.8 2.9E-16 6.3E-21 170.1 32.4 563 396-1064 15-659 (1062)
174 KOG0270 WD40 repeat-containing 99.8 9.7E-18 2.1E-22 170.9 19.5 254 346-613 192-454 (463)
175 KOG0303 Actin-binding protein 99.8 9.5E-18 2.1E-22 167.9 19.1 239 329-590 76-321 (472)
176 KOG0644 Uncharacterized conser 99.8 8E-19 1.7E-23 191.0 12.0 284 327-656 183-472 (1113)
177 KOG1524 WD40 repeat-containing 99.8 5.1E-16 1.1E-20 161.3 31.3 498 332-966 12-524 (737)
178 KOG0307 Vesicle coat complex C 99.8 4.1E-18 8.9E-23 193.9 13.6 251 336-611 66-330 (1049)
179 KOG0322 G-protein beta subunit 99.8 2.1E-17 4.5E-22 156.7 15.8 289 323-651 3-322 (323)
180 KOG1334 WD40 repeat protein [G 99.8 7.6E-18 1.6E-22 173.3 13.3 302 325-654 133-468 (559)
181 KOG0642 Cell-cycle nuclear pro 99.7 1.5E-17 3.3E-22 174.6 15.6 262 391-663 289-572 (577)
182 KOG4227 WD40 repeat protein [G 99.7 8.1E-17 1.8E-21 160.4 19.8 302 326-652 48-387 (609)
183 KOG1007 WD repeat protein TSSC 99.7 1.3E-16 2.8E-21 153.2 20.3 260 328-608 57-361 (370)
184 KOG4497 Uncharacterized conser 99.7 7.2E-16 1.6E-20 150.7 25.2 327 535-955 14-421 (447)
185 KOG1310 WD40 repeat protein [G 99.7 1.1E-16 2.4E-21 166.6 20.8 246 435-725 44-312 (758)
186 KOG0649 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 141.6 26.7 286 736-1059 12-314 (325)
187 KOG0642 Cell-cycle nuclear pro 99.7 3.4E-17 7.3E-22 172.1 16.4 271 326-619 286-572 (577)
188 KOG1188 WD40 repeat protein [G 99.7 8E-17 1.7E-21 158.8 17.6 292 457-764 42-346 (376)
189 KOG4227 WD40 repeat protein [G 99.7 4.9E-16 1.1E-20 154.9 21.8 294 392-715 52-386 (609)
190 PRK11028 6-phosphogluconolacto 99.7 1.4E-14 3E-19 160.0 36.1 198 806-1008 83-304 (330)
191 KOG0649 WD40 repeat protein [G 99.7 2.2E-15 4.8E-20 141.2 24.6 281 336-649 12-313 (325)
192 KOG0290 Conserved WD40 repeat- 99.7 1.8E-15 3.8E-20 145.7 24.0 292 327-648 38-361 (364)
193 KOG2110 Uncharacterized conser 99.7 2E-14 4.4E-19 143.7 31.6 242 396-654 5-250 (391)
194 KOG1188 WD40 repeat protein [G 99.7 3.8E-16 8.2E-21 154.1 19.0 276 349-652 42-346 (376)
195 PRK11028 6-phosphogluconolacto 99.7 2.4E-14 5.3E-19 158.1 35.1 275 348-652 3-304 (330)
196 KOG0644 Uncharacterized conser 99.7 4.8E-17 1E-21 177.4 12.6 287 567-919 182-471 (1113)
197 KOG2110 Uncharacterized conser 99.7 1E-14 2.2E-19 145.8 27.2 241 802-1064 5-251 (391)
198 KOG1007 WD repeat protein TSSC 99.7 8.3E-16 1.8E-20 147.7 18.7 229 822-1063 39-291 (370)
199 KOG0322 G-protein beta subunit 99.7 5E-16 1.1E-20 147.5 16.0 287 391-715 9-322 (323)
200 KOG0771 Prolactin regulatory e 99.7 3.5E-16 7.6E-21 159.4 15.3 199 806-1010 148-356 (398)
201 KOG1517 Guanine nucleotide bin 99.7 8.8E-15 1.9E-19 164.2 26.2 303 579-1011 1065-1384(1387)
202 KOG0290 Conserved WD40 repeat- 99.7 1.8E-14 4E-19 138.8 23.8 242 800-1051 94-356 (364)
203 KOG1240 Protein kinase contain 99.7 5.5E-14 1.2E-18 160.6 29.6 256 392-655 1044-1337(1431)
204 PRK01742 tolB translocation pr 99.7 1.1E-14 2.4E-19 165.5 24.5 235 356-633 183-426 (429)
205 PF02239 Cytochrom_D1: Cytochr 99.7 1.2E-12 2.6E-17 143.3 38.5 332 455-922 6-353 (369)
206 PF02239 Cytochrom_D1: Cytochr 99.7 3E-13 6.6E-18 147.9 33.9 318 554-974 15-356 (369)
207 KOG0771 Prolactin regulatory e 99.7 2.3E-15 4.9E-20 153.6 15.8 197 847-1062 148-355 (398)
208 KOG1517 Guanine nucleotide bin 99.6 3.9E-14 8.5E-19 159.1 25.4 297 332-654 1062-1383(1387)
209 KOG1587 Cytoplasmic dynein int 99.6 5.8E-14 1.3E-18 156.9 25.8 252 395-654 241-518 (555)
210 KOG0974 WD-repeat protein WDR6 99.6 6.4E-12 1.4E-16 142.7 40.8 199 443-654 89-290 (967)
211 COG4946 Uncharacterized protei 99.6 1E-10 2.3E-15 120.6 45.5 103 802-906 401-508 (668)
212 PRK01742 tolB translocation pr 99.6 2.9E-14 6.3E-19 162.1 21.9 232 319-589 188-426 (429)
213 PF04762 IKI3: IKI3 family; I 99.6 1.6E-09 3.4E-14 131.8 62.8 510 394-1061 73-639 (928)
214 KOG2394 WD40 protein DMR-N9 [G 99.6 8.9E-14 1.9E-18 145.3 22.3 169 811-988 182-384 (636)
215 KOG2139 WD40 repeat protein [G 99.6 6.8E-13 1.5E-17 132.1 27.3 288 336-652 100-431 (445)
216 KOG0974 WD-repeat protein WDR6 99.6 1.8E-11 3.9E-16 139.1 41.5 200 336-565 89-290 (967)
217 KOG2111 Uncharacterized conser 99.6 3.3E-12 7.1E-17 125.6 30.7 239 398-654 7-258 (346)
218 KOG1240 Protein kinase contain 99.6 1.2E-13 2.7E-18 157.9 24.0 362 654-1059 1038-1431(1431)
219 KOG1310 WD40 repeat protein [G 99.6 1.7E-14 3.8E-19 150.5 15.7 245 326-616 42-311 (758)
220 KOG1587 Cytoplasmic dynein int 99.6 1.7E-13 3.7E-18 153.2 24.3 252 334-609 242-517 (555)
221 KOG1334 WD40 repeat protein [G 99.6 2.1E-14 4.5E-19 148.3 14.7 295 392-715 138-465 (559)
222 KOG2041 WD40 repeat protein [G 99.6 4.1E-12 8.9E-17 136.9 32.1 510 395-1008 13-619 (1189)
223 KOG2139 WD40 repeat protein [G 99.6 1.5E-12 3.3E-17 129.6 26.0 260 734-1008 140-431 (445)
224 KOG2111 Uncharacterized conser 99.6 1.1E-12 2.5E-17 128.8 24.6 241 803-1064 6-259 (346)
225 KOG1523 Actin-related protein 99.6 7.6E-13 1.6E-17 129.9 22.8 232 395-639 9-266 (361)
226 KOG1832 HIV-1 Vpr-binding prot 99.6 6.5E-15 1.4E-19 161.6 9.5 343 171-642 1014-1379(1516)
227 PRK03629 tolB translocation pr 99.6 2E-12 4.4E-17 146.5 29.5 238 357-632 179-427 (429)
228 KOG1272 WD40-repeat-containing 99.6 1.8E-14 4E-19 147.7 11.2 272 395-689 128-404 (545)
229 KOG2041 WD40 repeat protein [G 99.5 5E-11 1.1E-15 128.7 36.9 533 336-966 16-620 (1189)
230 PRK05137 tolB translocation pr 99.5 3.1E-12 6.8E-17 146.2 29.4 237 357-632 182-432 (435)
231 KOG2321 WD40 repeat protein [G 99.5 1.7E-12 3.7E-17 136.9 24.3 283 332-653 49-344 (703)
232 KOG1523 Actin-related protein 99.5 1.3E-12 2.8E-17 128.3 21.8 206 801-1012 9-240 (361)
233 PRK03629 tolB translocation pr 99.5 1.3E-12 2.7E-17 148.2 25.4 234 319-588 183-427 (429)
234 KOG1272 WD40-repeat-containing 99.5 4.1E-14 8.9E-19 145.2 11.7 273 336-649 131-406 (545)
235 PF04762 IKI3: IKI3 family; I 99.5 5.9E-09 1.3E-13 126.9 58.0 569 333-1013 74-689 (928)
236 KOG2315 Predicted translation 99.5 1.9E-11 4.1E-16 129.5 31.2 287 335-660 35-352 (566)
237 COG5354 Uncharacterized protei 99.5 9E-12 2E-16 130.1 27.9 282 334-654 32-350 (561)
238 PRK04922 tolB translocation pr 99.5 1.9E-12 4.2E-17 147.7 24.5 233 319-588 188-432 (433)
239 PRK04922 tolB translocation pr 99.5 3.4E-12 7.4E-17 145.6 26.0 238 357-632 184-432 (433)
240 PF10282 Lactonase: Lactonase, 99.5 3.2E-10 7E-15 124.9 40.5 210 804-1015 88-331 (345)
241 PRK02889 tolB translocation pr 99.5 3.7E-12 7.9E-17 144.7 25.5 223 392-632 191-424 (427)
242 PRK02889 tolB translocation pr 99.5 3.1E-12 6.7E-17 145.3 24.7 235 320-589 181-425 (427)
243 KOG3881 Uncharacterized conser 99.5 3.7E-12 7.9E-17 128.7 21.7 272 334-632 55-341 (412)
244 COG5354 Uncharacterized protei 99.5 1.2E-10 2.7E-15 121.7 32.8 358 512-1000 15-421 (561)
245 KOG2394 WD40 protein DMR-N9 [G 99.5 5.3E-13 1.2E-17 139.6 15.2 153 335-494 220-383 (636)
246 KOG2315 Predicted translation 99.5 1.2E-10 2.5E-15 123.7 31.2 336 529-917 34-391 (566)
247 PRK05137 tolB translocation pr 99.5 9.7E-12 2.1E-16 142.2 25.6 233 320-588 187-432 (435)
248 COG4946 Uncharacterized protei 99.4 1.2E-09 2.7E-14 112.9 35.6 172 813-998 331-508 (668)
249 COG2706 3-carboxymuconate cycl 99.4 1.1E-09 2.3E-14 111.1 34.2 281 707-1013 15-328 (346)
250 KOG2321 WD40 repeat protein [G 99.4 2.9E-11 6.3E-16 127.8 23.8 284 439-764 49-343 (703)
251 KOG2314 Translation initiation 99.4 1.8E-10 3.8E-15 121.5 28.3 326 532-1009 213-574 (698)
252 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.2E-09 6.9E-14 113.0 37.3 205 806-1017 108-339 (352)
253 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.2E-09 2.6E-14 116.2 32.7 269 357-660 27-338 (352)
254 PF08662 eIF2A: Eukaryotic tra 99.4 4.8E-11 1E-15 118.3 20.9 155 847-1017 9-187 (194)
255 KOG1409 Uncharacterized conser 99.4 6E-11 1.3E-15 117.8 21.0 340 566-1010 15-396 (404)
256 PRK01029 tolB translocation pr 99.4 1.7E-10 3.7E-15 130.2 27.0 238 324-590 174-426 (428)
257 KOG2314 Translation initiation 99.4 4.3E-10 9.3E-15 118.6 27.5 334 397-874 211-573 (698)
258 PF10282 Lactonase: Lactonase, 99.4 6.9E-09 1.5E-13 114.4 38.7 249 396-652 36-322 (345)
259 PRK01029 tolB translocation pr 99.4 4E-10 8.7E-15 127.1 29.2 243 357-634 165-426 (428)
260 KOG1354 Serine/threonine prote 99.3 6E-11 1.3E-15 117.7 18.6 265 334-611 25-362 (433)
261 PRK00178 tolB translocation pr 99.3 2.4E-10 5.1E-15 131.2 26.2 229 325-588 189-427 (430)
262 COG2706 3-carboxymuconate cycl 99.3 6.7E-09 1.4E-13 105.4 32.4 252 801-1067 38-327 (346)
263 PRK04792 tolB translocation pr 99.3 1.9E-10 4E-15 131.1 24.2 228 326-588 209-446 (448)
264 KOG3881 Uncharacterized conser 99.3 1.8E-10 3.9E-15 116.7 20.9 116 803-919 203-323 (412)
265 PF08662 eIF2A: Eukaryotic tra 99.3 2.1E-10 4.4E-15 113.8 20.4 162 400-570 9-185 (194)
266 PRK00178 tolB translocation pr 99.3 1E-09 2.3E-14 125.9 29.4 237 358-632 180-427 (430)
267 KOG1354 Serine/threonine prote 99.3 6.7E-10 1.4E-14 110.4 23.2 357 441-963 25-432 (433)
268 TIGR02800 propeller_TolB tol-p 99.3 3.3E-10 7.2E-15 130.1 24.8 215 324-571 179-404 (417)
269 TIGR02800 propeller_TolB tol-p 99.3 6.9E-10 1.5E-14 127.5 27.4 210 392-617 185-405 (417)
270 PRK04792 tolB translocation pr 99.3 7.7E-10 1.7E-14 126.0 26.7 223 392-632 213-446 (448)
271 KOG1409 Uncharacterized conser 99.3 7.7E-11 1.7E-15 117.1 15.4 358 476-875 15-395 (404)
272 KOG2659 LisH motif-containing 99.3 2.6E-11 5.7E-16 116.0 10.8 170 3-184 24-205 (228)
273 KOG4547 WD40 repeat-containing 99.2 2E-09 4.3E-14 115.6 23.4 194 405-609 2-221 (541)
274 KOG4547 WD40 repeat-containing 99.2 3.4E-09 7.4E-14 113.8 22.3 188 812-1009 3-221 (541)
275 TIGR03300 assembly_YfgL outer 99.2 3.3E-08 7.1E-13 111.5 31.8 183 457-654 67-261 (377)
276 TIGR03300 assembly_YfgL outer 99.2 1.1E-07 2.3E-12 107.4 35.1 210 821-1059 153-377 (377)
277 KOG0280 Uncharacterized conser 99.1 1.3E-08 2.9E-13 99.4 18.6 251 336-610 71-335 (339)
278 PLN02919 haloacid dehalogenase 99.0 1.6E-07 3.4E-12 117.1 31.9 260 738-1012 571-892 (1057)
279 PRK04043 tolB translocation pr 99.0 6.8E-08 1.5E-12 108.3 25.8 205 327-565 181-402 (419)
280 KOG4190 Uncharacterized conser 99.0 2.1E-09 4.5E-14 112.9 12.3 244 392-651 731-987 (1034)
281 PLN02919 haloacid dehalogenase 99.0 3.2E-07 7E-12 114.4 31.1 255 806-1064 571-891 (1057)
282 KOG0280 Uncharacterized conser 99.0 1.3E-07 2.7E-12 92.8 20.9 198 805-1010 124-335 (339)
283 KOG3617 WD40 and TPR repeat-co 98.9 3.1E-08 6.7E-13 109.7 18.4 506 337-970 18-590 (1416)
284 KOG1897 Damage-specific DNA bi 98.9 0.0003 6.4E-09 81.2 53.6 619 332-1005 304-1001(1096)
285 KOG1064 RAVE (regulator of V-A 98.9 4.9E-09 1.1E-13 125.2 12.7 202 392-619 2204-2409(2439)
286 PF15492 Nbas_N: Neuroblastoma 98.9 4E-07 8.7E-12 89.9 23.8 208 808-1017 3-268 (282)
287 KOG4190 Uncharacterized conser 98.9 6E-09 1.3E-13 109.6 11.5 295 325-648 726-1032(1034)
288 KOG1064 RAVE (regulator of V-A 98.9 8.5E-09 1.8E-13 123.2 12.5 224 408-661 2180-2407(2439)
289 PRK11138 outer membrane biogen 98.9 3E-06 6.5E-11 95.9 32.2 220 814-1061 161-394 (394)
290 PF07433 DUF1513: Protein of u 98.9 3.9E-06 8.5E-11 86.1 29.2 232 806-1059 8-283 (305)
291 KOG1897 Damage-specific DNA bi 98.9 0.00057 1.2E-08 79.0 52.7 581 403-1065 264-946 (1096)
292 KOG0309 Conserved WD40 repeat- 98.9 2E-08 4.4E-13 109.6 12.8 211 389-609 107-340 (1081)
293 KOG3914 WD repeat protein WDR4 98.9 3.6E-08 7.7E-13 101.1 13.6 165 336-526 64-232 (390)
294 PRK04043 tolB translocation pr 98.8 1.4E-06 3.1E-11 97.7 27.7 212 824-1065 170-402 (419)
295 KOG3617 WD40 and TPR repeat-co 98.8 6.8E-07 1.5E-11 99.4 21.6 339 399-819 18-372 (1416)
296 PF07433 DUF1513: Protein of u 98.8 1E-05 2.2E-10 83.1 28.6 234 337-603 7-280 (305)
297 PRK11138 outer membrane biogen 98.8 1E-05 2.2E-10 91.5 31.4 153 457-617 71-232 (394)
298 KOG3914 WD repeat protein WDR4 98.8 8.8E-08 1.9E-12 98.3 12.7 160 847-1018 66-233 (390)
299 KOG4532 WD40-like repeat conta 98.8 1.1E-06 2.4E-11 84.9 19.3 148 399-548 161-321 (344)
300 PF15492 Nbas_N: Neuroblastoma 98.7 1E-05 2.3E-10 80.2 25.2 249 338-619 1-270 (282)
301 KOG0309 Conserved WD40 repeat- 98.7 1.6E-07 3.4E-12 102.9 13.5 295 395-716 23-339 (1081)
302 COG5170 CDC55 Serine/threonine 98.7 3.1E-07 6.8E-12 90.3 13.4 261 801-1064 25-370 (460)
303 KOG1832 HIV-1 Vpr-binding prot 98.7 1.3E-08 2.8E-13 113.1 4.4 217 392-639 1097-1318(1516)
304 PF13360 PQQ_2: PQQ-like domai 98.7 6.8E-06 1.5E-10 86.2 24.4 223 822-1068 2-237 (238)
305 PF06433 Me-amine-dh_H: Methyl 98.6 2.2E-05 4.9E-10 81.5 26.6 232 780-1017 69-329 (342)
306 PF08450 SGL: SMP-30/Gluconola 98.6 6.4E-05 1.4E-09 79.0 31.2 221 739-997 4-244 (246)
307 PF08450 SGL: SMP-30/Gluconola 98.6 6.7E-05 1.4E-09 78.8 31.0 219 339-597 4-244 (246)
308 KOG0882 Cyclophilin-related pe 98.6 1.2E-06 2.5E-11 91.0 15.8 298 733-1058 8-369 (558)
309 COG5170 CDC55 Serine/threonine 98.6 9.6E-07 2.1E-11 87.0 14.2 159 800-963 170-365 (460)
310 KOG4532 WD40-like repeat conta 98.6 1.4E-05 3E-10 77.6 21.2 201 815-1020 85-294 (344)
311 PF13360 PQQ_2: PQQ-like domai 98.6 1.5E-05 3.3E-10 83.5 23.8 195 813-1015 35-237 (238)
312 KOG4714 Nucleoporin [Nuclear s 98.6 1.4E-06 3.1E-11 83.9 13.9 209 337-564 39-255 (319)
313 KOG1920 IkappaB kinase complex 98.5 9.6E-05 2.1E-09 87.1 30.8 250 579-928 69-334 (1265)
314 PRK02888 nitrous-oxide reducta 98.5 2.4E-05 5.2E-10 88.0 24.2 137 809-954 283-449 (635)
315 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00077 1.7E-08 65.7 30.6 136 500-646 24-159 (354)
316 PF06433 Me-amine-dh_H: Methyl 98.5 0.00011 2.3E-09 76.7 26.8 285 555-884 17-330 (342)
317 PRK02888 nitrous-oxide reducta 98.5 4.3E-05 9.3E-10 86.0 25.3 182 810-1009 200-405 (635)
318 PF00400 WD40: WD domain, G-be 98.5 4.6E-07 9.9E-12 63.3 6.2 39 876-914 1-39 (39)
319 PF00930 DPPIV_N: Dipeptidyl p 98.5 6.6E-05 1.4E-09 83.3 26.7 267 343-642 1-347 (353)
320 KOG2695 WD40 repeat protein [G 98.5 6.1E-07 1.3E-11 89.9 9.1 168 338-529 215-388 (425)
321 KOG0882 Cyclophilin-related pe 98.4 5.1E-06 1.1E-10 86.4 15.0 258 395-661 8-314 (558)
322 KOG4714 Nucleoporin [Nuclear s 98.4 2.9E-06 6.3E-11 81.9 12.2 208 837-1059 83-316 (319)
323 KOG1645 RING-finger-containing 98.4 3E-05 6.6E-10 79.8 19.9 251 391-652 188-461 (463)
324 PF10607 CLTH: CTLH/CRA C-term 98.4 7.3E-07 1.6E-11 84.4 7.9 133 38-183 5-141 (145)
325 KOG1275 PAB-dependent poly(A) 98.4 5.5E-06 1.2E-10 93.7 15.7 180 813-1006 146-340 (1118)
326 KOG1920 IkappaB kinase complex 98.4 8.2E-05 1.8E-09 87.6 25.5 282 334-652 68-365 (1265)
327 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00074 1.6E-08 65.8 27.5 115 342-482 18-132 (354)
328 PF00400 WD40: WD domain, G-be 98.4 6.8E-07 1.5E-11 62.4 5.5 38 325-363 2-39 (39)
329 KOG2695 WD40 repeat protein [G 98.3 1.3E-06 2.8E-11 87.7 8.2 151 817-974 228-385 (425)
330 KOG3621 WD40 repeat-containing 98.3 0.00011 2.4E-09 81.6 23.4 138 335-493 34-178 (726)
331 KOG0396 Uncharacterized conser 98.3 2.5E-06 5.4E-11 86.9 9.8 173 5-189 115-297 (389)
332 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00048 1E-08 76.4 28.9 303 538-904 1-345 (353)
333 PF14583 Pectate_lyase22: Olig 98.3 0.0024 5.3E-08 68.1 32.0 279 340-650 41-379 (386)
334 KOG1645 RING-finger-containing 98.2 7.5E-05 1.6E-09 77.0 18.1 250 327-608 186-461 (463)
335 KOG2066 Vacuolar assembly/sort 98.2 4.3E-05 9.3E-10 85.9 16.3 188 844-1061 40-233 (846)
336 KOG2114 Vacuolar assembly/sort 98.1 0.00021 4.5E-09 81.2 20.4 206 850-1070 30-252 (933)
337 KOG1275 PAB-dependent poly(A) 98.1 5E-05 1.1E-09 86.3 15.5 186 457-652 149-342 (1118)
338 KOG2114 Vacuolar assembly/sort 98.1 0.0004 8.8E-09 78.9 22.1 202 808-1016 29-251 (933)
339 cd00216 PQQ_DH Dehydrogenases 98.1 0.0039 8.4E-08 72.4 31.0 138 500-644 62-238 (488)
340 KOG2066 Vacuolar assembly/sort 98.1 0.00032 6.8E-09 79.2 20.6 186 736-965 41-233 (846)
341 PRK13616 lipoprotein LpqB; Pro 98.1 0.0008 1.7E-08 78.5 25.1 222 844-1080 350-587 (591)
342 smart00668 CTLH C-terminal to 98.0 2.5E-06 5.5E-11 65.7 2.6 53 37-90 4-56 (58)
343 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.033 7.2E-07 64.9 36.4 61 823-885 441-501 (527)
344 PF02897 Peptidase_S9_N: Proly 97.9 0.014 3.1E-07 66.7 31.7 252 336-614 125-410 (414)
345 PF14583 Pectate_lyase22: Olig 97.9 0.012 2.7E-07 62.9 28.1 229 402-643 41-303 (386)
346 PF08596 Lgl_C: Lethal giant l 97.9 0.0029 6.2E-08 70.0 24.4 244 736-1018 3-300 (395)
347 PF06977 SdiA-regulated: SdiA- 97.9 0.0049 1.1E-07 63.0 24.2 197 328-547 15-239 (248)
348 PF11768 DUF3312: Protein of u 97.9 0.005 1.1E-07 68.1 25.6 110 939-1061 208-329 (545)
349 COG0823 TolB Periplasmic compo 97.9 0.00094 2E-08 74.5 20.6 198 324-550 182-390 (425)
350 cd00216 PQQ_DH Dehydrogenases 97.9 0.006 1.3E-07 70.8 28.1 248 350-621 113-437 (488)
351 COG0823 TolB Periplasmic compo 97.9 0.0057 1.2E-07 68.4 25.6 195 437-643 188-390 (425)
352 PF08513 LisH: LisH; InterPro 97.9 2.3E-05 5.1E-10 48.2 3.8 27 6-32 1-27 (27)
353 PF11768 DUF3312: Protein of u 97.8 0.00063 1.4E-08 74.9 17.2 115 802-919 205-332 (545)
354 PF06977 SdiA-regulated: SdiA- 97.8 0.0058 1.3E-07 62.5 23.3 216 837-1058 15-247 (248)
355 smart00667 LisH Lissencephaly 97.8 2.6E-05 5.6E-10 52.3 4.1 32 4-35 2-33 (34)
356 PF08596 Lgl_C: Lethal giant l 97.7 0.0067 1.5E-07 67.1 23.6 254 336-596 3-324 (395)
357 PF02897 Peptidase_S9_N: Proly 97.7 0.023 5E-07 65.0 29.0 249 398-656 125-408 (414)
358 PF04053 Coatomer_WDAD: Coatom 97.7 0.0063 1.4E-07 68.2 23.0 223 392-653 28-263 (443)
359 COG3391 Uncharacterized conser 97.7 0.014 3E-07 65.3 25.5 206 805-1017 76-292 (381)
360 PF04053 Coatomer_WDAD: Coatom 97.7 0.01 2.3E-07 66.6 24.1 218 802-1061 32-262 (443)
361 PF04841 Vps16_N: Vps16, N-ter 97.7 0.03 6.5E-07 63.0 27.6 199 808-1018 34-256 (410)
362 COG3490 Uncharacterized protei 97.7 0.015 3.2E-07 58.1 21.4 232 807-1060 72-347 (366)
363 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.09 2E-06 61.3 32.2 197 408-613 69-338 (527)
364 KOG3621 WD40 repeat-containing 97.6 0.0004 8.8E-09 77.3 12.1 208 801-1017 32-254 (726)
365 PF04841 Vps16_N: Vps16, N-ter 97.6 0.056 1.2E-06 60.9 28.7 230 397-661 81-323 (410)
366 PRK13616 lipoprotein LpqB; Pro 97.6 0.0037 8.1E-08 73.0 19.8 183 803-1000 350-560 (591)
367 COG3391 Uncharacterized conser 97.6 0.2 4.3E-06 56.1 32.7 251 398-661 32-292 (381)
368 COG3490 Uncharacterized protei 97.5 0.064 1.4E-06 53.7 23.2 256 580-914 69-346 (366)
369 PF08553 VID27: VID27 cytoplas 97.4 0.0083 1.8E-07 70.9 19.6 147 855-1008 492-647 (794)
370 PF00780 CNH: CNH domain; Int 97.4 0.13 2.8E-06 55.0 27.7 231 406-662 5-265 (275)
371 KOG1008 Uncharacterized conser 97.4 0.00012 2.5E-09 80.3 3.7 203 487-716 58-275 (783)
372 PF00780 CNH: CNH domain; Int 97.4 0.15 3.2E-06 54.6 27.7 228 345-619 6-266 (275)
373 TIGR03074 PQQ_membr_DH membran 97.3 0.69 1.5E-05 56.0 39.5 205 457-661 196-486 (764)
374 COG3386 Gluconolactonase [Carb 97.3 0.071 1.5E-06 56.8 23.8 199 808-1020 30-254 (307)
375 COG3386 Gluconolactonase [Carb 97.3 0.061 1.3E-06 57.3 23.1 223 340-597 30-274 (307)
376 KOG1008 Uncharacterized conser 97.3 9.1E-05 2E-09 81.0 1.8 203 334-563 56-275 (783)
377 PF03178 CPSF_A: CPSF A subuni 97.2 0.025 5.5E-07 62.0 19.0 214 781-1005 5-262 (321)
378 PF03178 CPSF_A: CPSF A subuni 97.1 0.17 3.6E-06 55.6 24.7 175 357-563 2-202 (321)
379 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.19 4.1E-06 55.5 24.2 83 801-883 306-407 (415)
380 PF10647 Gmad1: Lipoprotein Lp 97.1 0.21 4.6E-06 52.1 23.8 147 845-1001 25-188 (253)
381 PRK10115 protease 2; Provision 97.1 0.83 1.8E-05 55.4 32.1 246 397-655 127-397 (686)
382 KOG2817 Predicted E3 ubiquitin 97.1 0.0035 7.7E-08 65.6 10.1 106 6-113 117-235 (394)
383 KOG4640 Anaphase-promoting com 97.0 0.0027 5.8E-08 70.2 9.3 93 336-451 22-115 (665)
384 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.18 3.8E-06 55.8 23.0 84 530-619 308-409 (415)
385 PF14870 PSII_BNR: Photosynthe 97.0 0.7 1.5E-05 49.0 27.0 158 840-1005 141-301 (302)
386 smart00320 WD40 WD40 repeats. 96.9 0.0022 4.9E-08 43.8 5.3 39 876-914 2-40 (40)
387 KOG4640 Anaphase-promoting com 96.9 0.0049 1.1E-07 68.2 9.6 93 844-945 21-114 (665)
388 KOG2395 Protein involved in va 96.8 0.044 9.4E-07 59.6 16.2 146 858-1008 348-500 (644)
389 PRK10115 protease 2; Provision 96.8 2 4.4E-05 52.1 33.4 244 336-611 128-397 (686)
390 PHA02713 hypothetical protein; 96.8 0.065 1.4E-06 63.2 19.3 199 855-1077 303-547 (557)
391 KOG2395 Protein involved in va 96.8 0.031 6.7E-07 60.7 14.5 144 407-562 344-499 (644)
392 PF10647 Gmad1: Lipoprotein Lp 96.7 0.23 5E-06 51.8 20.9 147 803-954 24-183 (253)
393 smart00320 WD40 WD40 repeats. 96.7 0.0032 7E-08 43.0 4.8 37 326-363 4-40 (40)
394 PF15390 DUF4613: Domain of un 96.7 0.057 1.2E-06 59.8 15.8 160 844-1011 20-189 (671)
395 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.087 1.9E-06 45.4 13.3 101 889-1004 2-110 (111)
396 KOG4441 Proteins containing BT 96.6 0.19 4.2E-06 59.0 20.8 235 407-655 284-549 (571)
397 PF14727 PHTB1_N: PTHB1 N-term 96.5 0.99 2.1E-05 50.2 24.8 284 590-917 37-361 (418)
398 PHA02713 hypothetical protein; 96.5 0.12 2.6E-06 61.0 18.7 203 452-665 303-546 (557)
399 PF07995 GSDH: Glucose / Sorbo 96.5 1.2 2.6E-05 48.7 25.3 113 336-465 3-135 (331)
400 PF08553 VID27: VID27 cytoplas 96.5 0.06 1.3E-06 64.0 15.8 146 453-607 492-646 (794)
401 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.098 2.1E-06 45.1 12.7 102 337-468 2-109 (111)
402 PF07995 GSDH: Glucose / Sorbo 96.5 0.75 1.6E-05 50.3 23.4 241 804-1056 3-330 (331)
403 PF05096 Glu_cyclase_2: Glutam 96.4 1.4 3.1E-05 45.0 22.7 185 804-997 46-249 (264)
404 PF14727 PHTB1_N: PTHB1 N-term 96.2 2.9 6.3E-05 46.6 32.0 277 745-1062 36-361 (418)
405 KOG2079 Vacuolar assembly/sort 96.2 0.054 1.2E-06 64.1 12.9 104 407-516 98-202 (1206)
406 KOG3630 Nuclear pore complex, 96.1 0.13 2.8E-06 61.3 15.1 249 802-1088 100-364 (1405)
407 PRK13684 Ycf48-like protein; P 96.0 3.2 6.9E-05 45.5 29.8 157 886-1061 172-331 (334)
408 PF14870 PSII_BNR: Photosynthe 96.0 2.8 6E-05 44.6 30.0 230 804-1058 63-301 (302)
409 COG3204 Uncharacterized protei 95.9 2.5 5.5E-05 43.3 21.3 204 732-961 83-308 (316)
410 KOG4441 Proteins containing BT 95.8 0.68 1.5E-05 54.5 20.1 234 812-1072 283-555 (571)
411 COG3204 Uncharacterized protei 95.7 3 6.6E-05 42.8 23.6 171 839-1010 81-265 (316)
412 KOG4499 Ca2+-binding protein R 95.6 2.5 5.4E-05 41.5 19.4 47 807-853 216-263 (310)
413 KOG4499 Ca2+-binding protein R 95.5 2.7 5.9E-05 41.3 19.0 136 441-589 108-264 (310)
414 KOG2444 WD40 repeat protein [G 95.5 0.039 8.4E-07 53.7 6.8 102 816-917 72-178 (238)
415 KOG1898 Splicing factor 3b, su 95.5 8.5 0.00018 46.5 31.2 106 808-917 939-1049(1205)
416 PF12894 Apc4_WD40: Anaphase-p 95.4 0.04 8.6E-07 39.5 5.1 33 335-369 12-44 (47)
417 PF12894 Apc4_WD40: Anaphase-p 95.3 0.073 1.6E-06 38.1 6.2 31 396-426 11-41 (47)
418 TIGR03074 PQQ_membr_DH membran 95.2 5.3 0.00012 48.6 24.8 204 813-1017 194-486 (764)
419 PF05096 Glu_cyclase_2: Glutam 95.0 4.9 0.00011 41.2 22.9 192 735-954 45-248 (264)
420 PF05694 SBP56: 56kDa selenium 95.0 2.5 5.5E-05 46.2 19.1 188 809-997 136-392 (461)
421 KOG2079 Vacuolar assembly/sort 95.0 0.077 1.7E-06 62.9 8.4 102 500-607 100-202 (1206)
422 KOG1898 Splicing factor 3b, su 94.8 13 0.00028 45.1 39.9 122 942-1075 939-1062(1205)
423 TIGR02604 Piru_Ver_Nterm putat 94.8 7 0.00015 43.6 23.3 139 803-953 14-200 (367)
424 PF10168 Nup88: Nuclear pore c 94.7 12 0.00025 45.3 25.9 94 801-917 83-180 (717)
425 PF12234 Rav1p_C: RAVE protein 94.5 0.88 1.9E-05 52.9 15.4 113 443-563 31-156 (631)
426 KOG1916 Nuclear protein, conta 94.4 0.061 1.3E-06 62.1 5.7 131 329-485 127-282 (1283)
427 PHA03098 kelch-like protein; P 94.2 1.9 4E-05 51.3 18.2 154 498-656 342-515 (534)
428 PF10168 Nup88: Nuclear pore c 94.0 1.1 2.4E-05 53.8 15.5 92 978-1072 84-190 (717)
429 KOG2444 WD40 repeat protein [G 93.9 0.19 4.1E-06 49.0 7.2 106 407-518 69-178 (238)
430 PF12234 Rav1p_C: RAVE protein 93.9 1.3 2.9E-05 51.5 15.2 122 839-964 25-155 (631)
431 PF15390 DUF4613: Domain of un 93.6 16 0.00035 41.5 26.4 59 940-998 342-404 (671)
432 COG4257 Vgb Streptogramin lyas 93.5 8.3 0.00018 39.1 17.6 192 845-1063 63-264 (353)
433 PF14761 HPS3_N: Hermansky-Pud 93.5 3.2 7E-05 40.8 14.6 150 899-1060 29-213 (215)
434 PHA03098 kelch-like protein; P 93.3 2.4 5.3E-05 50.3 17.0 196 406-613 293-516 (534)
435 KOG4460 Nuclear pore complex, 93.3 1.3 2.7E-05 48.7 12.5 111 978-1089 103-226 (741)
436 PRK13684 Ycf48-like protein; P 93.0 17 0.00036 39.9 31.4 153 802-964 172-330 (334)
437 KOG2280 Vacuolar assembly/sort 93.0 5.5 0.00012 46.2 17.6 185 824-1020 65-258 (829)
438 KOG2377 Uncharacterized conser 92.9 3.4 7.3E-05 44.7 14.8 145 846-997 25-172 (657)
439 PF05694 SBP56: 56kDa selenium 92.8 18 0.00039 39.9 28.6 228 407-641 86-392 (461)
440 TIGR03118 PEPCTERM_chp_1 conse 92.8 14 0.0003 38.5 24.0 214 443-662 24-289 (336)
441 PHA02790 Kelch-like protein; P 92.3 5.6 0.00012 46.2 17.7 184 813-1012 271-474 (480)
442 PF03022 MRJP: Major royal jel 92.3 14 0.0003 39.4 19.0 170 824-997 35-254 (287)
443 COG1520 FOG: WD40-like repeat 92.2 21 0.00045 40.0 21.7 201 810-1018 65-278 (370)
444 TIGR02604 Piru_Ver_Nterm putat 92.0 4.6 9.9E-05 45.1 16.0 103 887-997 14-142 (367)
445 COG3823 Glutamine cyclotransfe 91.5 7.8 0.00017 37.6 14.0 100 813-917 55-159 (262)
446 PLN00033 photosystem II stabil 91.2 29 0.00063 38.8 28.1 150 846-1005 241-396 (398)
447 KOG1916 Nuclear protein, conta 91.2 0.31 6.7E-06 56.7 5.5 179 823-1008 153-374 (1283)
448 PF11725 AvrE: Pathogenicity f 91.2 36 0.00079 43.9 23.0 150 332-518 360-517 (1774)
449 PF08728 CRT10: CRT10; InterP 91.1 6.5 0.00014 46.5 16.0 176 814-1008 49-246 (717)
450 PHA02790 Kelch-like protein; P 91.1 9.5 0.00021 44.4 17.8 149 498-655 318-473 (480)
451 TIGR03118 PEPCTERM_chp_1 conse 91.0 22 0.00048 37.1 22.1 205 805-1017 25-288 (336)
452 TIGR03548 mutarot_permut cycli 90.8 29 0.00062 38.0 21.0 71 498-568 123-199 (323)
453 PF14781 BBS2_N: Ciliary BBSom 90.4 12 0.00026 33.8 13.3 118 340-480 4-132 (136)
454 PLN00033 photosystem II stabil 90.4 34 0.00074 38.3 32.5 150 889-1058 241-396 (398)
455 COG1520 FOG: WD40-like repeat 90.2 35 0.00077 38.1 23.2 199 411-619 71-279 (370)
456 TIGR03606 non_repeat_PQQ dehyd 90.2 38 0.00082 38.4 28.2 67 329-408 24-90 (454)
457 KOG2280 Vacuolar assembly/sort 90.1 20 0.00044 41.9 18.2 164 398-572 85-255 (829)
458 PF03022 MRJP: Major royal jel 90.1 28 0.00062 37.1 18.8 167 466-640 35-253 (287)
459 KOG1900 Nuclear pore complex, 90.0 17 0.00036 45.5 18.4 154 863-1016 96-281 (1311)
460 PF10313 DUF2415: Uncharacteri 89.8 0.91 2E-05 31.5 4.6 33 335-367 1-35 (43)
461 PF10214 Rrn6: RNA polymerase 89.7 62 0.0014 40.2 27.9 174 801-1010 78-278 (765)
462 PRK14131 N-acetylneuraminic ac 89.6 33 0.00072 38.4 20.1 39 602-642 314-352 (376)
463 KOG3630 Nuclear pore complex, 89.6 3.3 7.2E-05 50.1 12.0 147 443-595 102-260 (1405)
464 COG5167 VID27 Protein involved 89.4 13 0.00029 41.0 15.3 150 446-607 471-631 (776)
465 KOG2377 Uncharacterized conser 89.3 2.1 4.6E-05 46.2 9.2 122 334-475 66-187 (657)
466 COG3292 Predicted periplasmic 89.1 46 0.00099 37.9 23.8 72 395-474 163-234 (671)
467 PF10313 DUF2415: Uncharacteri 89.1 1.4 3.1E-05 30.6 5.2 32 397-428 1-35 (43)
468 COG3823 Glutamine cyclotransfe 88.9 24 0.00053 34.4 16.2 175 457-640 58-246 (262)
469 KOG1900 Nuclear pore complex, 88.8 5 0.00011 49.8 13.0 172 318-518 63-273 (1311)
470 PF14761 HPS3_N: Hermansky-Pud 88.5 26 0.00056 34.8 15.3 146 857-1008 29-214 (215)
471 COG3292 Predicted periplasmic 88.4 51 0.0011 37.5 23.0 272 336-648 166-443 (671)
472 PF13449 Phytase-like: Esteras 88.4 36 0.00077 37.2 18.6 151 801-953 18-231 (326)
473 PF13449 Phytase-like: Esteras 87.7 47 0.001 36.3 23.3 164 843-1008 19-249 (326)
474 PF11725 AvrE: Pathogenicity f 87.6 41 0.00088 43.5 19.8 134 862-1004 619-768 (1774)
475 TIGR03548 mutarot_permut cycli 87.6 48 0.001 36.2 20.3 111 897-1012 72-198 (323)
476 PF07676 PD40: WD40-like Beta 87.3 1.9 4.1E-05 29.5 5.2 31 332-362 6-38 (39)
477 PF07250 Glyoxal_oxid_N: Glyox 87.2 12 0.00027 38.2 13.0 148 512-662 49-207 (243)
478 KOG4659 Uncharacterized conser 87.1 94 0.002 39.2 32.7 25 733-757 660-684 (1899)
479 KOG1983 Tomosyn and related SN 86.9 9.4 0.0002 48.2 14.4 68 939-1012 201-268 (993)
480 KOG2247 WD40 repeat-containing 86.8 0.13 2.9E-06 55.5 -1.2 242 739-1017 39-289 (615)
481 COG5167 VID27 Protein involved 86.7 16 0.00035 40.4 13.9 142 812-965 477-632 (776)
482 PF10433 MMS1_N: Mono-function 86.6 74 0.0016 37.4 36.8 105 496-606 219-340 (504)
483 COG5290 IkappaB kinase complex 86.5 46 0.00099 39.2 17.8 476 328-916 10-536 (1243)
484 PF05935 Arylsulfotrans: Aryls 86.3 42 0.0009 39.0 18.5 147 864-1020 126-313 (477)
485 PRK13614 lipoprotein LpqB; Pro 86.3 48 0.001 39.0 18.6 158 845-1010 344-520 (573)
486 TIGR03547 muta_rot_YjhT mutatr 86.1 60 0.0013 35.9 19.8 43 957-999 168-210 (346)
487 PF07569 Hira: TUP1-like enhan 86.1 4.9 0.00011 40.7 9.6 72 942-1014 16-101 (219)
488 PF07569 Hira: TUP1-like enhan 86.0 2.9 6.4E-05 42.3 7.9 74 894-967 18-97 (219)
489 PF05935 Arylsulfotrans: Aryls 85.9 75 0.0016 36.9 24.6 193 456-655 116-370 (477)
490 PF12657 TFIIIC_delta: Transcr 85.6 3.9 8.5E-05 39.8 8.4 32 397-428 86-123 (173)
491 COG4590 ABC-type uncharacteriz 84.9 3.3 7.2E-05 44.7 7.7 159 801-969 219-390 (733)
492 COG4590 ABC-type uncharacteriz 84.6 26 0.00057 38.2 14.1 162 733-918 219-388 (733)
493 PRK13613 lipoprotein LpqB; Pro 84.5 93 0.002 37.0 20.2 190 804-1002 364-576 (599)
494 PF10433 MMS1_N: Mono-function 84.2 94 0.002 36.5 40.7 80 814-896 418-503 (504)
495 COG5276 Uncharacterized conser 84.0 57 0.0012 33.8 26.0 276 579-916 87-369 (370)
496 PF02333 Phytase: Phytase; In 83.9 73 0.0016 35.1 23.7 188 457-654 70-292 (381)
497 TIGR03606 non_repeat_PQQ dehyd 83.3 29 0.00062 39.4 14.7 112 885-999 28-166 (454)
498 PF12657 TFIIIC_delta: Transcr 83.1 7.1 0.00015 38.0 8.9 31 887-917 86-122 (173)
499 PRK13613 lipoprotein LpqB; Pro 82.7 1.1E+02 0.0024 36.3 22.1 152 845-1008 364-537 (599)
500 smart00036 CNH Domain found in 82.2 78 0.0017 34.1 30.4 210 395-618 41-280 (302)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-72 Score=555.26 Aligned_cols=493 Identities=21% Similarity=0.315 Sum_probs=416.8
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhh
Q 001363 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1092)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1092)
+-|++|+++|+|+.+||.+|+.+||.|||+.+. ++.|.++++.|+|+.++..+..+. +++.....++.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999775 899999999999999999998874 3334445669999999999
Q ss_pred hhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCcccccc
Q 001363 82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK 161 (1092)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 161 (1092)
||++..|....|+.+||+...++. ++.++|++|+.-+..++.....+... .......|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999988887 57788999988777655433333222 122356899999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCCc
Q 001363 162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT 241 (1092)
Q Consensus 162 ~~~~~~p~~rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 241 (1092)
+|++||++||+||++||+++|.||| +.+..|||.||.|.+ .| +|+++
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~q------ip~qt--------------- 216 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQ------IPSQT--------------- 216 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------cc------CCchh---------------
Confidence 9999999999999999999999999 455589999999988 44 34433
Q ss_pred CcccccccccCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCCccccC
Q 001363 242 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321 (1092)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~~~~~~ 321 (1092)
T Consensus 217 -------------------------------------------------------------------------------- 216 (519)
T KOG0293|consen 217 -------------------------------------------------------------------------------- 216 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEE
Q 001363 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1092)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~ 401 (1092)
.++|..|+++||.+.||++|+ +||+++.|.+..||++.....+.. ...+.+|..+|..
T Consensus 217 -----~qil~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~y 274 (519)
T KOG0293|consen 217 -----WQILQDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSY 274 (519)
T ss_pred -----hhhHhhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEE
Confidence 366889999999999999999 699999999999999876654321 1238899999999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001363 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 481 (1092)
+.||||.+||++|+.+..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..||++ |..+..+
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecCC-cchhhcc
Confidence 9999999999999999999999999998766332 24668899999999999 79999999999999954 5556666
Q ss_pred ecCC-cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001363 482 EGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 482 ~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
++-. ..|.++++ +.||+++++.+.|..|++++..+...+.. .....+|+++++|.||+++++.-. +..+.+|
T Consensus 350 ~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~----~qei~LW 422 (519)
T KOG0293|consen 350 EGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQ----DQEIHLW 422 (519)
T ss_pred cccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcc----cCeeEEe
Confidence 6544 45888888 55889999999999999999887655543 334568999999999999988765 4459999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAV 639 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~ 639 (1092)
|+.....++.+.||.+....|.++.-..+..++++||+|+.|+||+..+|+++..+.+|.. .|++|+|+| +..++|+
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFAS 500 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhc
Confidence 9999999999999996666677765566678999999999999999999999999998754 699999999 6678999
Q ss_pred EeCCCeEEEEECCC
Q 001363 640 IANENRIKILETPE 653 (1092)
Q Consensus 640 ~~~dg~i~iw~~~~ 653 (1092)
+++||+|+||-...
T Consensus 501 asDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 501 ASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCeEEEecCCc
Confidence 99999999997653
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.3e-62 Score=468.46 Aligned_cols=493 Identities=18% Similarity=0.285 Sum_probs=405.1
Q ss_pred chhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHH
Q 001363 3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRK 78 (1092)
Q Consensus 3 ~~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 78 (1092)
+-+.||||||.|||+|+.+++++++||+|+++++| ++.|-+.|.+|+||.++..+++| +++.+.+..+||
T Consensus 5 iessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYE 78 (508)
T KOG0275|consen 5 IESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYE 78 (508)
T ss_pred eecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHH
Confidence 34679999999999999999999999999999998 89999999999999999999998 666667899999
Q ss_pred hhhhhhccCCCHHHHHHHHHhh--ccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCc
Q 001363 79 QNFFEALDGHDIAKALNILKKD--LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANP 156 (1092)
Q Consensus 79 q~~~Ell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~ 156 (1092)
|..+||+|.++...|..+||+- ..-|.+.+|++|-+|..||..+.++..+++. +..++.|+. .|.+.+..++
T Consensus 79 qivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrRa---~IAQ~ls~EV 152 (508)
T KOG0275|consen 79 QIVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRRA---VIAQALSGEV 152 (508)
T ss_pred HHHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHHH---HHHHHhcCce
Confidence 9999999999999999999973 3335667899999999999999998877733 255777764 3444444433
Q ss_pred ccccccCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccC
Q 001363 157 ILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFS 236 (1092)
Q Consensus 157 ~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 236 (1092)
- .+||+||..||+||++||.++.+.|..+ ...||. .+
T Consensus 153 ~--------VVppSRLlaLlGQaLKWQqHQGLLPPGt--~iDLFR------------------------Gk--------- 189 (508)
T KOG0275|consen 153 H--------VVPPSRLLALLGQALKWQQHQGLLPPGT--TIDLFR------------------------GK--------- 189 (508)
T ss_pred E--------EcChHHHHHHHHHHhhhHhhcCCCCCCc--eeeecc------------------------ch---------
Confidence 2 3899999999999999999987766411 012221 10
Q ss_pred CCCCcCcccccccccCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCC
Q 001363 237 SSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316 (1092)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~ 316 (1092)
. .+| ...|..||.+..
T Consensus 190 A-----------------------A~K-------------------~~~Ee~~Pt~l~---------------------- 205 (508)
T KOG0275|consen 190 A-----------------------AMK-------------------DQEEERYPTQLA---------------------- 205 (508)
T ss_pred h-----------------------hhh-------------------hhHhhhchHHhh----------------------
Confidence 0 000 001223444432
Q ss_pred ccccCCCcceeeec-ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC
Q 001363 317 TSFSDFPKTVAQTL-IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1092)
Q Consensus 317 ~~~~~~p~~~~~~l-~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h 395 (1092)
+.+ -|.+..+.|..|||||+ +|++|+.||.|.|||..+|+..+...++.-| -+--+
T Consensus 206 -----------r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----------~fMMm 262 (508)
T KOG0275|consen 206 -----------RSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----------NFMMM 262 (508)
T ss_pred -----------hheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhc-----------ceeec
Confidence 222 24566889999999999 6999999999999999999988765554322 14447
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
..+|.|+.||.|...||+|+.||.|++|.+.+|.+++.+. ++|+..|+|+.||.|+. .+++++.|.+++|.-+++|
T Consensus 263 d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 263 DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSG 338 (508)
T ss_pred ccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccc
Confidence 8999999999999999999999999999999999988532 38999999999999999 6999999999999999999
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CceEEEEEccCC-CEEEEEecCCC
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSANG-RRLFSCGTSKE 552 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~dg-~~l~~~~~~~~ 552 (1092)
++++.|+||...|+...| .+||..+++++.||+|++|+..+.++..++...+ .+|.++..-|.+ ..+++|..
T Consensus 339 K~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr--- 413 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR--- 413 (508)
T ss_pred hhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC---
Confidence 999999999999999998 5688999999999999999999999888776543 467888777754 56777754
Q ss_pred CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
.+++++.++ .|+.++.+.......+...+++.+|.|.++++.++|+.++.|...+|.+-.++..|.. .+..++-+|
T Consensus 414 -sntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHP 489 (508)
T KOG0275|consen 414 -SNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHP 489 (508)
T ss_pred -CCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCc
Confidence 566999886 4778888876655567788889999999999999999999999999999999988754 578899999
Q ss_pred CCCEEEEEeCCCeEEEEE
Q 001363 633 NGTLLAVIANENRIKILE 650 (1092)
Q Consensus 633 ~~~~l~~~~~dg~i~iw~ 650 (1092)
..+++|+-+.||.+++|.
T Consensus 490 HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 490 HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccchhhhhcccchhhhcC
Confidence 999999999999999995
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-59 Score=500.25 Aligned_cols=576 Identities=18% Similarity=0.249 Sum_probs=494.8
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCee-EEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCC
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~ 418 (1092)
++|+++|+ +|++... ..|.+-|+.++... ... -......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s~------------------~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPSG------------------SNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceecccC------------------CccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 6777654 45899999999873 211 223567899999999999999999999
Q ss_pred EEEEEEccCCCcccceEEEcc-cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccC
Q 001363 419 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1092)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 497 (1092)
.+++|++.+|+.++ .++. |++||.-++|+|.|. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 5566 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc
Q 001363 498 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576 (1092)
Q Consensus 498 ~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 576 (1092)
+-..|++|..|+++++||+..... ...+..|...|++++|++|+..+++++. +..+.+||..+-+..++++..+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999996555 6788889999999999999999999987 6679999998877777776644
Q ss_pred cCCceEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 577 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 577 ~~~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
.+.++.+-++ +.++++++.+|.+++||.+++++........ ...+..+...+....++..+.|..+.++|.
T Consensus 235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEc
Confidence 6777778777 6799999999999999999998877665443 233666666666667778888999999999
Q ss_pred CCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCc
Q 001363 652 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 731 (1092)
Q Consensus 652 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~ 731 (1092)
++.+....+-|..+.|..+.+- .|+.+.++.++..+.+|+++... ..|..+ .
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~~---~~c~ii----~ 362 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLPT---SYCQII----P 362 (775)
T ss_pred cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecCC---CceEEE----e
Confidence 9999999999999999988886 57889999999999999997552 334322 4
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001363 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s 811 (1092)
+|...|.++....+|-.+++++.|..+++|.++.+.. .....-...+|.+.|.+++++
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~----------------------~~~~~a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS----------------------KSLCVAQANGHTNSVGAVAGS 420 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcc----------------------hhhhhhhhcccccccceeeec
Confidence 6999999999888899999999999999999843211 000001122599999999998
Q ss_pred cCC-CEEEEEe-CCeEEEEEcCCcee---------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeE
Q 001363 812 KND-AYLFSAS-GGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 880 (1092)
Q Consensus 812 ~dg-~~l~~~s-dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 880 (1092)
..+ .++++++ |+++++|++...+. ..+...|...|++++++| +++++|||+.|++.+||+++......
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence 766 5777777 89999999976221 112356899999999999 89999999999999999999999999
Q ss_pred eeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcE
Q 001363 881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 959 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i 959 (1092)
+|.||...|.++.|+|..+.+||+|.|++|+||.+++. .++++++||.. .|..+.|-.+|+.|++ +.||-+
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-----SClkT~eGH~~---aVlra~F~~~~~qliS~~adGli 571 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-----SCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLI 571 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-----eeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcE
Confidence 99999999999999999999999999999999999994 48999999987 8999999999999998 799999
Q ss_pred EEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001363 960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
++|++.+++|... +.+|..+|++++-++++.+++||+.||.|.+|.=.+
T Consensus 572 KlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 572 KLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999999998 779999999999999999999999999999996444
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-56 Score=476.93 Aligned_cols=586 Identities=13% Similarity=0.182 Sum_probs=478.0
Q ss_pred CCcCCCCCCCchhhhcccccCCccccCCCcce-e-eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEE
Q 001363 295 KNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV-A-QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI 372 (1092)
Q Consensus 295 ~~~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~-~-~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~ 372 (1092)
|.-..|+|++..+...+.... ..++.-+... + ..-.+-.+.+++++.+||++ .|++++...-+++|++.+|+.++.
T Consensus 22 GG~~~~s~nG~~L~t~~~d~V-i~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs 99 (775)
T KOG0319|consen 22 GGPVAWSSNGQHLYTACGDRV-IIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS 99 (775)
T ss_pred CCceeECCCCCEEEEecCceE-EEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh
Confidence 345778888888776665310 0111112222 1 12234567999999999998 688889999999999999988764
Q ss_pred eeeeeeecccccceeeEeeecC-CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec
Q 001363 373 RNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451 (1092)
Q Consensus 373 ~~~~~~d~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 451 (1092)
++. |++||.-++|+|.|.+||+|+.|+.++|||+..+.+.. .|+||.+.|.++.|.|
T Consensus 100 -------------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~ 157 (775)
T KOG0319|consen 100 -------------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHP 157 (775)
T ss_pred -------------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCC
Confidence 444 99999999999999999999999999999999986555 7999999999999999
Q ss_pred CCCcEEEEEEeCCCcEEEEECCCCce-eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC
Q 001363 452 PCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL 530 (1092)
Q Consensus 452 d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 530 (1092)
+-.+.+|++|+.|+++++||+.+... +..+..|...|+++++.+ |+..+++++.|..+.+||+...+........ .
T Consensus 158 ~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e 234 (775)
T KOG0319|consen 158 HWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-E 234 (775)
T ss_pred ccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-h
Confidence 98876899999999999999996554 888999999999999955 6789999999999999999655554444332 2
Q ss_pred ceEEEEEccC-----CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001363 531 GCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 531 ~i~~~~~s~d-----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1092)
.+.++.+-++ |.+++++|. ++.+++||..++++........ ...+..+...+....++..+.|..+.++
T Consensus 235 ~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQnl~l~ 308 (775)
T KOG0319|consen 235 SLESVVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQNLFLY 308 (775)
T ss_pred heeeEEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccceEEEE
Confidence 4566667666 668888875 7779999999998876665443 2336666677777788888899999999
Q ss_pred ECCCCceEEEEeCCCCCCCCceEEEc-cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccccccc
Q 001363 606 DMNKVQLLTTIDAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684 (1092)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 684 (1092)
|.++.+....+-+.. ..|..|+|- |+.+++|++++.+.+++|+..+..+. .+.+|.+.|.++...
T Consensus 309 d~~~l~i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~----------- 374 (775)
T KOG0319|consen 309 DEDELTIVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW----------- 374 (775)
T ss_pred EccccEEehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec-----------
Confidence 999999888887543 468888875 68899999999999999998887666 889999999988843
Q ss_pred CCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCc-EEEEeecCCeeEEEee
Q 001363 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRW 763 (1092)
Q Consensus 685 ~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~~w~~ 763 (1092)
..|-++++++.|.++++|.++.+.. .........+|.+.|.+++++..+. .+++++.|+++++|++
T Consensus 375 -----------~~g~llat~sKD~svilWr~~~~~~--~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 375 -----------SSGDLLATGSKDKSVILWRLNNNCS--KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred -----------ccCcEEEEecCCceEEEEEecCCcc--hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence 4567899999999999999842221 1112223367999999999987664 5678889999999999
Q ss_pred cCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCC
Q 001363 764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP 842 (1092)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~ 842 (1092)
+..+.... +. ..........|...|.|++++|+.+++|+|+ |.+.+||+++.+....++.+|
T Consensus 442 ~~s~~~~~--------~~---------~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH 504 (775)
T KOG0319|consen 442 PKSKETAF--------PI---------VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH 504 (775)
T ss_pred CCcccccc--------cc---------eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC
Confidence 87321100 11 1111122335999999999999999999999 899999999999999999999
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001363 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 922 (1092)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~ 922 (1092)
...|.++.|+| ..+.+||+|.|++|+||.+.+..++++|.||+..|..+.|-.+|+.|+|++.||.|++|++++++
T Consensus 505 ~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e--- 580 (775)
T KOG0319|consen 505 TRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE--- 580 (775)
T ss_pred ccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh---
Confidence 99999999999 88999999999999999999999999999999999999999999999999999999999999966
Q ss_pred eeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCC
Q 001363 923 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 966 (1092)
Q Consensus 923 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~ 966 (1092)
+..+++.|.. .|.+++.++.+.++++ +.|+.|.+|.-.+
T Consensus 581 --C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 581 --CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred --hhhhhhhccc---eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 7888888886 8999999999999998 6899999996443
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-52 Score=427.07 Aligned_cols=575 Identities=15% Similarity=0.189 Sum_probs=462.6
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d 417 (1092)
.-+.-.|.|+.++.+.+ ..|.+-++++...... +++|...++-..|||.|-|+|+|...
T Consensus 22 ~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~s 80 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVS 80 (603)
T ss_pred eEeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCc
Confidence 34555788887777755 6788888887765433 77899999999999999999999999
Q ss_pred CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEE--eCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001363 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
|+|+|||....+.+. ..++..-.++|..++|++|+++ ++.. +.++..+++-+++|..+..+.||...|+++.|-|
T Consensus 81 G~vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kp 157 (603)
T KOG0318|consen 81 GKVRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKP 157 (603)
T ss_pred CcEEEEeccCcceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccC
Confidence 999999998743322 2256678899999999999995 4433 3444455555568889999999999999999987
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
+.. -++++|+.|++|.+|+=...+-...+..|..-|.++.|+|||.++++++. ++.+++||-.+|+.+..+....
T Consensus 158 sRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~ 232 (603)
T KOG0318|consen 158 SRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSD 232 (603)
T ss_pred CCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCC
Confidence 654 57999999999999987777777778888889999999999999999987 6679999999999999999655
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC-CCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP-ENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.|.+.|.+++|+||+.++++++.|.+++|||+.+.+++.++....... ....+.|. ...|++.+.+|.|.+++....
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 566999999999999999999999999999999999999998765421 12234444 678999999999999999999
Q ss_pred ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCcccc
Q 001363 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 734 (1092)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~ 734 (1092)
..+..+.+|...|++++.+ +|++++.+++.||.|.-|+...+... .+....|.
T Consensus 311 ~~~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~-----~~~g~~h~ 363 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSD-----RLAGKGHT 363 (603)
T ss_pred ChhheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCcccc-----cccccccc
Confidence 9999999999999999996 78899999999999999998754433 23334599
Q ss_pred ccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001363 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
..|.+++.+..+. +++.+.|.++++.++..+...... . .+ -.....+++..+++
T Consensus 364 nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 364 NQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSDG 417 (603)
T ss_pred ceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCCC
Confidence 9999999988776 788888889988776543221110 0 11 12233488999998
Q ss_pred CEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee--eEeeccccCCeEEE
Q 001363 815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGL 892 (1092)
Q Consensus 815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l 892 (1092)
.+++.+.++.|.+..-.++ +.... ..-...++|++| ++..+|+|+.||.|+||.+..+.. ...+..|.++|+++
T Consensus 418 ~~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV 493 (603)
T ss_pred CEEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE
Confidence 8888888766666552222 12222 344678999999 999999999999999999987653 34566799999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeee
Q 001363 893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLK 971 (1092)
Q Consensus 893 ~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~ 971 (1092)
++|||+.+||++...+.+.+||+.+++.... ... -|. ..|.+++|||++.++|+ +-|..|.||++.......
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~---FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i 566 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWA---FHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHI 566 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCceecc-eee---eee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhhe
Confidence 9999999999999999999999999764221 111 122 37999999999999999 578999999998877666
Q ss_pred eeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 972 QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 972 ~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
....+|...|+.+.|-. ...|++.+.|..|++|++.
T Consensus 567 ~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 567 IIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EeccccccCceeEEEec-CceEEeccCcceeEEeccc
Confidence 66788988899999974 5678999999999999875
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7e-51 Score=433.55 Aligned_cols=612 Identities=17% Similarity=0.283 Sum_probs=460.0
Q ss_pred cCCCCCCCchhhhcccccCCccccCCCcceeeecc-cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeee
Q 001363 297 IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF 375 (1092)
Q Consensus 297 ~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~ 375 (1092)
-+.|+|++..+...- .+...+.++.+....+|. .+...|++++.||+|. +|++....|...+-++.....++.+++
T Consensus 19 nl~ft~dG~sviSPv--GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~f 95 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPV--GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNF 95 (893)
T ss_pred cEEECCCCCEEEecc--CCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEee
Confidence 466776644332211 123344555555555554 4556999999999998 666667889999999888777765443
Q ss_pred eeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc-----ccceEEEcccccceeEEEEe
Q 001363 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFS 450 (1092)
Q Consensus 376 ~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s 450 (1092)
+.+|.|+.|||||+++|+|..+ .+.||....... .....++.+|...|.++.|+
T Consensus 96 --------------------k~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws 154 (893)
T KOG0291|consen 96 --------------------KRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWS 154 (893)
T ss_pred --------------------cCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEec
Confidence 3789999999999999998654 699998764322 22344677899999999999
Q ss_pred cCCCcEEEEEEeCCCcEEEEECCCCce--eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001363 451 APCKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 528 (1092)
Q Consensus 451 ~d~~~l~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 528 (1092)
.|.+ +|++|+.|.++++|+++..+- .+.+.+|.+.|.++-|. .|...+++.+.||.+.+|..+..-.... ...
T Consensus 155 ~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~-~~~ 229 (893)
T KOG0291|consen 155 DDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELD-KAE 229 (893)
T ss_pred cCCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccc-ccc
Confidence 9999 899999999999999887665 57788999999988874 4567899999999999998764311110 000
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001363 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1092)
.. .+|.--.-.-.+++....-..|-. ..+.+-.. ....|++.+|++..+.+++|-..|...+|.+.
T Consensus 230 kd--------~eg~~d~~~~~~~Eek~~~~~~~k----~~k~~ln~--~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP 295 (893)
T KOG0291|consen 230 KD--------EEGSDDEEMDEDGEEKTHKIFWYK----TKKHYLNQ--NSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP 295 (893)
T ss_pred cc--------ccccccccccccchhhhcceEEEE----EEeeeecc--cccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence 00 011000000000000000111211 00111111 12579999999999999999999999999999
Q ss_pred CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-CeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCc
Q 001363 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1092)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 687 (1092)
...+++.+..... .|..++|+..|.++|.|+.. |.+.||+......+
T Consensus 296 ~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV------------------------------ 343 (893)
T KOG0291|consen 296 DFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV------------------------------ 343 (893)
T ss_pred CceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeecccee------------------------------
Confidence 9999999986643 58999999999999999875 78889987754322
Q ss_pred eeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCC
Q 001363 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1092)
Q Consensus 688 ~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~ 767 (1092)
+...+|...+.+++++|||+++++|+.||.|++|+
T Consensus 344 ----------------------------------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn----- 378 (893)
T KOG0291|consen 344 ----------------------------------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN----- 378 (893)
T ss_pred ----------------------------------------eeccccccceeeEEECCCCcEEEeccCCCcEEEEe-----
Confidence 23345788899999999999999999999888866
Q ss_pred cCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCC-C
Q 001363 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP-T 845 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~-~ 845 (1092)
..+|.|+.+++ +|...|+.+.|+..|+.+++.+ ||+|+.||+..++..+++..+.. .
T Consensus 379 -----------------~~SgfC~vTFt----eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q 437 (893)
T KOG0291|consen 379 -----------------TQSGFCFVTFT----EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ 437 (893)
T ss_pred -----------------ccCceEEEEec----cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCcee
Confidence 45677777766 3999999999999999999999 99999999999999999986653 5
Q ss_pred eEEEEEcCCCCCEEEEEeCCC-cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001363 846 ATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 924 (1092)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~ 924 (1092)
..|++..| .|.++..|+.|. .|++|++++|+.+..+.||.++|.+++|+|++..|||+|.|++|++||+-...... .
T Consensus 438 fscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v-E 515 (893)
T KOG0291|consen 438 FSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV-E 515 (893)
T ss_pred eeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee-e
Confidence 68999999 899999999887 89999999999999999999999999999999999999999999999997642111 1
Q ss_pred eeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeecc-------------------CCCCCEEEE
Q 001363 925 SLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP-------------------ISSVPISQA 984 (1092)
Q Consensus 925 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~-------------------~h~~~v~~l 984 (1092)
.++.. ..+..++|+|||+.||+ .-||.|.+||+..+..+..+-. ......+.+
T Consensus 516 tl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti 588 (893)
T KOG0291|consen 516 TLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTI 588 (893)
T ss_pred eEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEE
Confidence 22222 14889999999999999 6899999999987655532110 125788999
Q ss_pred EEecCCCEEEEEECCCcEEEEEcCCCceEEeecccccc--------------------------------------CCC-
Q 001363 985 TFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL--------------------------------------RPT- 1025 (1092)
Q Consensus 985 ~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------------~~~- 1025 (1092)
++|+||.+|++||....|++|++.++.++.+|...... |..
T Consensus 589 ~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~ 668 (893)
T KOG0291|consen 589 CYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQ 668 (893)
T ss_pred EEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccc
Confidence 99999999999999999999999999998887621111 110
Q ss_pred ---Cccc----cccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1026 ---TSCL----HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1026 ---~~~~----~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
.... .|....+.|+| .++-+|++++.|. .||.+
T Consensus 669 ~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEGl-~IYsl 708 (893)
T KOG0291|consen 669 RGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEGL-LIYSL 708 (893)
T ss_pred cCCccccccCceEEEEEEEECC-CcCeeeeecccce-EEEec
Confidence 0111 46678899999 4888999999885 33443
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-49 Score=407.61 Aligned_cols=542 Identities=12% Similarity=0.201 Sum_probs=435.7
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
....+.+|...++-..|||.|- ++|+|...|+|||||....+.+...+|++ -.++|..++|+
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~v-----------------~aG~I~Di~Wd 112 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQV-----------------LAGPIKDISWD 112 (603)
T ss_pred ceeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeeee-----------------cccccccceeC
Confidence 3567789999999999999996 79999999999999998866666555442 45799999999
Q ss_pred CCCCEEEEEeC--CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001363 406 PDGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 406 pdg~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
+|+++|++.+. ++..+++-+++|..+. ++.||...|++++|-|.... .++||+.|++|.+|+-.--+...++..
T Consensus 113 ~ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~ 188 (603)
T KOG0318|consen 113 FDSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFRE 188 (603)
T ss_pred CCCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccc
Confidence 99999988754 3334444444554445 78899999999999997665 899999999999998666677778889
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
|...|+++.|+| ||.++++++.||++.+||=.+++....+. .|.+.|.+++|+||++.+++++. +.++++|
T Consensus 189 HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIW 262 (603)
T KOG0318|consen 189 HSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIW 262 (603)
T ss_pred cccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEE
Confidence 999999999955 78999999999999999999999888887 78899999999999999999987 6679999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1092)
|..+.++++++.....-.+....+.|. +..|++.+.+|+|.+++...+..+..+.+|. ..|+++..+|++++|++|
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSG 338 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEee
Confidence 999999999887654222344455565 5689999999999999999999888888764 469999999999999999
Q ss_pred eCCCeEEEEECCCCceeeec-ccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc
Q 001363 641 ANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 641 ~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~ 719 (1092)
+.||.|.-|+...+..-... ++|...|.+++.+ +...+++.+.|.++++.++....
T Consensus 339 syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred ccCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCc
Confidence 99999999999988665544 6788888888776 23567888999999998764332
Q ss_pred CccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCC
Q 001363 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 799 (1092)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 799 (1092)
......+.+ .....+++..+++..++.+...+.+.+-+... +...
T Consensus 396 ~t~~~~~~l-----g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~----- 440 (603)
T KOG0318|consen 396 YTKSEVVKL-----GSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSI----- 440 (603)
T ss_pred ccccceeec-----CCCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceee-----
Confidence 222221111 12233788888887666666555444422211 1111
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 800 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
.-.....+++++|++..+++|+ |+.++||.+..+.. ...+..|.++|++++||| |+.+||+|...+.|.+||+.+.
T Consensus 441 ~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 441 PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASR 519 (603)
T ss_pred ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccC
Confidence 1345678999999999999998 79999999987553 334667999999999999 9999999999999999999998
Q ss_pred eeeEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe
Q 001363 877 EVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 877 ~~~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
+.... +.-|+..|.+++|||+.+++||||-|-.|.||+++.... .+.....|.. .|..++|-.+...+-+|.
T Consensus 520 ~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~----~i~iknAH~~---gVn~v~wlde~tvvSsG~ 592 (603)
T KOG0318|consen 520 EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK----HIIIKNAHLG---GVNSVAWLDESTVVSSGQ 592 (603)
T ss_pred ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh----heEecccccc---CceeEEEecCceEEeccC
Confidence 76433 334999999999999999999999999999999997432 2444455554 599999999998888899
Q ss_pred CCcEEEEEcC
Q 001363 956 ETHLAIYEAE 965 (1092)
Q Consensus 956 d~~i~lwd~~ 965 (1092)
|..|++|++.
T Consensus 593 Da~iK~W~v~ 602 (603)
T KOG0318|consen 593 DANIKVWNVT 602 (603)
T ss_pred cceeEEeccc
Confidence 9999999874
No 8
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-48 Score=416.49 Aligned_cols=575 Identities=15% Similarity=0.180 Sum_probs=446.4
Q ss_pred CceEEee-cCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 336 SPMSMDF-HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~-spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
.+..+.. +..|+++.+ +....|.+||+.+|+...... .......|+|++-+||.-+||+|
T Consensus 23 N~~~~~~~~~~Gr~va~--~a~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRAVAV--SALEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcEEEE--eccccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEE
Confidence 3443333 345874333 333689999999996553211 22344689999999999999999
Q ss_pred eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeec
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 494 (1092)
..||.|+||+..++.... ++.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..+.||...|+..-|.
T Consensus 84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 999999999999875443 7889999999999999999 89999999999999999988999999999999988875
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC---------
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--------- 565 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--------- 565 (1092)
. +..++++.+.|+.|++||+.+..+..+...|.+.+..+++.+ +.+++++. +..+.+|++...
T Consensus 159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY 230 (888)
T ss_pred C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence 4 457999999999999999999999999999999999999988 67777765 445999988211
Q ss_pred ---eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--------------E-EeC---------
Q 001363 566 ---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--------------T-IDA--------- 618 (1092)
Q Consensus 566 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--------------~-~~~--------- 618 (1092)
+...++... ..+....+...++++++++-+.|..+.+|.+.+.+.+. . -..
T Consensus 231 ~s~~~~G~~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~ 308 (888)
T KOG0306|consen 231 ISTKLRGTFIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS 308 (888)
T ss_pred ceeeccceeeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence 111122221 13455566677888889998999999999886532110 0 000
Q ss_pred --------CCCCCCCceEEEccCCC---EEEEEeCCCeEEEEECCCCcee---------eecccccCceeeeeecCCCcc
Q 001363 619 --------GGGLPENPRICFNKNGT---LLAVIANENRIKILETPESNSV---------DAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 619 --------~~~~~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
-.....+.++.+-|.++ .|+. -.++++.+|.++..... ..+.+|...|.+++++.
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~---- 383 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS---- 383 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec----
Confidence 00112356677766443 3333 56778888887753222 35668888999888873
Q ss_pred ccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCee
Q 001363 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 758 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 758 (1092)
|...++++ ..+.+++|+..+... .... ..+.+.+..|-|.+++++.|..+|.+
T Consensus 384 ------------------d~~~~~Sg-a~~SikiWn~~t~kc---iRTi-----~~~y~l~~~Fvpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 384 ------------------DSILLASG-AGESIKIWNRDTLKC---IRTI-----TCGYILASKFVPGDRYIVLGTKNGEL 436 (888)
T ss_pred ------------------Cceeeeec-CCCcEEEEEccCcce---eEEe-----ccccEEEEEecCCCceEEEeccCCce
Confidence 33334444 447899999774322 2111 33478888999999999999999999
Q ss_pred EEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC-----
Q 001363 759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----- 832 (1092)
Q Consensus 759 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~----- 832 (1092)
.+|++..... +-+ .+ .|.+.+.+++.+||++.+++++ |.+|++||..-
T Consensus 437 ~vfdlaS~~l----------------------~Et--i~--AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 437 QVFDLASASL----------------------VET--IR--AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred EEEEeehhhh----------------------hhh--hh--ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 9999865421 111 11 4999999999999999999998 89999999752
Q ss_pred ceeeEEec-------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001363 833 FKTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905 (1092)
Q Consensus 833 ~~~~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 905 (1092)
+...+.+. .-...|.|+.+|| |+++||++--|.+|+||-+++-+..-.+.||.-||.||..|||+++++|||
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS 569 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS 569 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc
Confidence 21111111 2456899999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEE
Q 001363 906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQA 984 (1092)
Q Consensus 906 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l 984 (1092)
.|+.|+||-++-|. |.+.+-+|.. .|.++.|-|+..++.+ |.|+.|+-||....+++.. +.+|...|+++
T Consensus 570 ADKnVKiWGLdFGD-----CHKS~fAHdD---Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~-L~~H~~ev~cL 640 (888)
T KOG0306|consen 570 ADKNVKIWGLDFGD-----CHKSFFAHDD---SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK-LDGHHSEVWCL 640 (888)
T ss_pred CCCceEEeccccch-----hhhhhhcccC---ceeEEEEcccceeEEEecCcceEEeechhhhhhhee-eccchheeeee
Confidence 99999999998866 5666666665 7999999999888777 7999999999999999988 67899999999
Q ss_pred EEecCCCEEEEEECCCcEEEEEcCCCce
Q 001363 985 TFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 985 ~fs~dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
+.+|+|.+++++|.|.+|++|.-....+
T Consensus 641 av~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred EEcCCCCeEEeccCCceeEeeeccCcce
Confidence 9999999999999999999999776443
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-48 Score=416.61 Aligned_cols=504 Identities=14% Similarity=0.231 Sum_probs=398.1
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
+.+|+|+.-+||.- +||+|-.||.|+||+..++..+.+ +.||...|+++.|...|..||+
T Consensus 65 k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rlaS 124 (888)
T KOG0306|consen 65 KAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLAS 124 (888)
T ss_pred cceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEee
Confidence 45899999999986 899999999999999998876654 7899999999999999999999
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
||.|+.|.+||+-....+. .+.||...|+.+-|..+.+ ++++.+.|+.|++||+++..|..+.-.|.+.+..+++
T Consensus 125 GskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~ 199 (888)
T KOG0306|consen 125 GSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVL 199 (888)
T ss_pred cCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEEE
Confidence 9999999999998754443 6889999999999998777 8999999999999999999999999999999999999
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCce------E-------EecCCCCceEEEEEccCCCEEEEEecCC---------
Q 001363 494 HAKENIHFIFSISVDGKIKAWLYDSLGAR------V-------DYDAPGLGCTRMAYSANGRRLFSCGTSK--------- 551 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~-------~~~~~~~~i~~~~~s~dg~~l~~~~~~~--------- 551 (1092)
.+ ..+++++.|+.+++|++....-. . ......+....++..++++++++-+.+.
T Consensus 200 ~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s 275 (888)
T KOG0306|consen 200 DE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRS 275 (888)
T ss_pred ec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecC
Confidence 54 58999999999999998211000 0 0000111122233333444333332211
Q ss_pred -----------------------------------------------------------------CCceeEEEEeCCC-C
Q 001363 552 -----------------------------------------------------------------EGESFLVEWNESE-G 565 (1092)
Q Consensus 552 -----------------------------------------------------------------~~~~~i~iwd~~~-~ 565 (1092)
-.++.+..+.+.. +
T Consensus 276 ~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~ 355 (888)
T KOG0306|consen 276 KEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSG 355 (888)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCC
Confidence 0022233333332 1
Q ss_pred eE--------EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE
Q 001363 566 AI--------KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1092)
Q Consensus 566 ~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1092)
.. ...+.||. ..|.+++++.+...+++| ..+.+.+|+..+.+++.++... .+.+..|-|.++++
T Consensus 356 ~~~p~~~~~~~i~~~GHR---~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 356 KTSPEADRTSNIEIGGHR---SDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYI 427 (888)
T ss_pred CCCccccccceeeeccch---hheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc----cEEEEEecCCCceE
Confidence 11 12344555 899999999887655555 4578999999999999999754 57889999999999
Q ss_pred EEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001363 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~ 717 (1092)
++|...|.+.+||+.....+...+.|.+.+++++.. ||++..++++.|.+|++|+...
T Consensus 428 v~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~----------------------pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS----------------------PDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred EEeccCCceEEEEeehhhhhhhhhccccceeeeeec----------------------CCCCceEEecCCcEEEEEeEEE
Confidence 999999999999999988888888777777766664 5666677777777777776441
Q ss_pred ccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCC
Q 001363 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797 (1092)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 797 (1092)
.... ....+.++..-. ..+.
T Consensus 486 ~~~~---------------------~gt~~k~lsl~~------------------------------------~rtL--- 505 (888)
T KOG0306|consen 486 VVSV---------------------PGTQKKVLSLKH------------------------------------TRTL--- 505 (888)
T ss_pred Eecc---------------------Ccccceeeeecc------------------------------------ceEE---
Confidence 1000 000000000000 1111
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 798 DSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 798 ~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
.-...|.|+.+||||++||++- |++++||-+.+.+....+.+|.-+|.|+.+|| |+++++||+.|++|+||-++-|
T Consensus 506 --el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 506 --ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred --eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccc
Confidence 1467899999999999999997 99999999999999999999999999999999 9999999999999999999999
Q ss_pred eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-Ee
Q 001363 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 955 (1092)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~ 955 (1092)
.|.+.+-+|.+.|.++.|-|+...+.++|.|+.|+-||-+. ...++.+.+|.. .|.+++.+|+|.++++ +.
T Consensus 583 DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k-----Fe~iq~L~~H~~---ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 583 DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-----FEEIQKLDGHHS---EVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh-----hhhheeeccchh---eeeeeEEcCCCCeEEeccC
Confidence 99999999999999999999999999999999999999887 447888888886 8999999999999999 68
Q ss_pred CCcEEEEEcCCc
Q 001363 956 ETHLAIYEAEEL 967 (1092)
Q Consensus 956 d~~i~lwd~~~~ 967 (1092)
|.+|++|.-..-
T Consensus 655 D~sIRlwE~tde 666 (888)
T KOG0306|consen 655 DKSIRLWERTDE 666 (888)
T ss_pred CceeEeeeccCc
Confidence 899999987653
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-50 Score=397.64 Aligned_cols=333 Identities=20% Similarity=0.316 Sum_probs=305.1
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
..|...+.||.+.|.|++|+|+|+ .||+|+.|.++++||+.+..+.++ .++|...|.|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA 164 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence 467789999999999999999998 599999999999999999988876 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec-----CCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-----d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||+|+|||+..+.++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence 999999999999999999999999987764 5889999999999965 556 7999999999999999999999
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-----------CC------
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-----------NG------ 541 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-----------dg------ 541 (1092)
..+.+|+.+|+|++|- + ..++++|+.|++|++|+...+.....+.+|.+.|+.++.+. .+
T Consensus 241 ~~lsgHT~~VTCvrwG--G-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWG--G-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEeccCccceEEEEEc--C-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 9999999999999983 2 35999999999999999999889999999999999988872 23
Q ss_pred -------------------CEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001363 542 -------------------RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1092)
Q Consensus 542 -------------------~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1092)
.+|++++. +.++++|+... .+++....+|. ..|+.+.|+||++++++++.|..
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence 34888875 67799999864 45788889998 89999999999999999999999
Q ss_pred EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccc
Q 001363 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1092)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (1092)
|++||..+|+.+.++.+| ...|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++
T Consensus 391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws-------- 460 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS-------- 460 (480)
T ss_pred eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence 999999999999999866 5679999999999999999999999999999999999999999999999996
Q ss_pred cccCCceeecCCCCCCCccceeeccccccceec
Q 001363 682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1092)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~ 714 (1092)
|||..+++|+.|..+++|.
T Consensus 461 --------------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 --------------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------CCCceeecCCCceEEEeec
Confidence 8899999999999999995
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-49 Score=391.30 Aligned_cols=367 Identities=20% Similarity=0.297 Sum_probs=296.5
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.||.++|.|++|+|+|++||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 77999999999999999999999999999999999976555 8899999999999999999 899999999999999
Q ss_pred CCCCcee-EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 472 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 472 ~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.++|+++ ..+.+|..+|++++|.|- ...|..++|++++.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk- 225 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK- 225 (480)
T ss_pred CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence 9999876 678999999999998552 23466667777765
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
++.++|||...+.++..+.+|. .+|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+ .|+.++.
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 5558888888899999999999 999999998764 899999999999999999999999998866 5888888
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc
Q 001363 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1092)
+-|- .|-+|..|.+ +....... .....+......
T Consensus 297 sTdy-~LRtgaf~~t--------~~~~~~~s----e~~~~Al~rY~~--------------------------------- 330 (480)
T KOG0271|consen 297 STDY-VLRTGAFDHT--------GRKPKSFS----EEQKKALERYEA--------------------------------- 330 (480)
T ss_pred cchh-hhhccccccc--------cccCCChH----HHHHHHHHHHHH---------------------------------
Confidence 7542 2223332221 11100000 000000100000
Q ss_pred ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCc
Q 001363 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790 (1092)
Q Consensus 711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 790 (1092)
..-..+.++++++.|.++.+|+-.... ++
T Consensus 331 ------------------------------~~~~~~erlVSgsDd~tlflW~p~~~k---------------------kp 359 (480)
T KOG0271|consen 331 ------------------------------VLKDSGERLVSGSDDFTLFLWNPFKSK---------------------KP 359 (480)
T ss_pred ------------------------------hhccCcceeEEecCCceEEEecccccc---------------------cc
Confidence 001123456777777777776532211 00
Q ss_pred eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 001363 791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 869 (1092)
Q Consensus 791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~ 869 (1092)
+. .+. +|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.+++
T Consensus 360 i~--rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 360 IT--RMT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK 434 (480)
T ss_pred hh--hhh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence 11 111 4899999999999999999999 99999999999999999999999999999999 999999999999999
Q ss_pred EEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 870 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 870 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd 914 (1092)
+|++.+.++...|.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999995
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.4e-45 Score=388.21 Aligned_cols=539 Identities=13% Similarity=0.169 Sum_probs=430.7
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
.+.|++||..+++-..+ .|.++|+...+.... .-.+...|.+++.||+|. ++++...+|...+-++.....++.
T Consensus 19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~Tl---~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYTL---PLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred cEEECCCCCEEEeccCC-EEEEEEccCCcceeE---EeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence 48899999999987555 599999998754432 224677899999999999 889999999999999888888888
Q ss_pred EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--------eEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001363 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
+. ...+|.++.|+| ||.+++.+ ..+.+.+|....... ..++.+|-..|.++.|+.|.+++++++.
T Consensus 93 f~-fk~~v~~i~fSP--ng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr--- 165 (893)
T KOG0291|consen 93 FN-FKRGVGAIKFSP--NGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR--- 165 (893)
T ss_pred Ee-ecCccceEEECC--CCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence 75 678899999955 66666554 456899997654332 2356677789999999999999999986
Q ss_pred CceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---------------------
Q 001363 553 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--------------------- 609 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--------------------- 609 (1092)
+..+++|+++..+- ...+.+|. +.|.++.|..+...+++.+.||.+.+|....
T Consensus 166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 66799999876655 56677777 9999999999999999999999999997761
Q ss_pred --Cce-----EE----EEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcc
Q 001363 610 --VQL-----LT----TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 610 --~~~-----~~----~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
++. .. ..-.......+++.+|++..+.|+++-..|.+.+|+++.-..+..+..
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi---------------- 305 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI---------------- 305 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec----------------
Confidence 111 00 001111124578888888888888888888888888876655543331
Q ss_pred ccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-Ce
Q 001363 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GV 757 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~ 757 (1092)
...+|..++|+..|..++.++.. |.
T Consensus 306 ------------------------------------------------------s~~~I~t~~~N~tGDWiA~g~~klgQ 331 (893)
T KOG0291|consen 306 ------------------------------------------------------SDQKILTVSFNSTGDWIAFGCSKLGQ 331 (893)
T ss_pred ------------------------------------------------------ccceeeEEEecccCCEEEEcCCccce
Confidence 34567888999999999888876 99
Q ss_pred eEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee
Q 001363 758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 836 (1092)
Q Consensus 758 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~ 836 (1092)
+.+|+++...+ . +..++|...+.++++||||+++|+|+ ||+|+|||..++-|+
T Consensus 332 LlVweWqsEsY------------------------V--lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 332 LLVWEWQSESY------------------------V--LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred EEEEEeeccce------------------------e--eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 99999987643 1 22346999999999999999999998 799999999999999
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccc-cCCeEEEEEcCCCCEEEEEeCCC-cEEEEE
Q 001363 837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDA-QIFVWD 914 (1092)
Q Consensus 837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~s~Dg-~I~iwd 914 (1092)
.+|..|...|+.+.|+. .++.+++.+-||+|+.||+..++..+++... .-...|++..|.|..++.|+.|. .|+||+
T Consensus 386 vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred EEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence 99999999999999999 8999999999999999999999999888753 23456788888899999888876 599999
Q ss_pred cCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEE
Q 001363 915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 993 (1092)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l 993 (1092)
+++|+ .+..+.||.. +|.+++|+|+|..||+ +.|.+|++||+-........+ .+...+..++|+|||+-|
T Consensus 465 ~qTGq-----llDiLsGHEg---PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 465 VQTGQ-----LLDILSGHEG---PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKEL 535 (893)
T ss_pred eecCe-----eeehhcCCCC---cceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeE
Confidence 99965 6778888876 8999999999999999 699999999986543222212 357789999999999999
Q ss_pred EEEECCCcEEEEEcCCCceEEeeccccccCCCCc----------cccccceEEEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001363 994 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS----------CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 994 ~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
++++.||.|.+||...+.....+.....+..+.. ...-+-..+++++ ||..+++|+....|+++++++.
T Consensus 536 aVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 536 AVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred EEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchh
Confidence 9999999999999999988866654443333310 1111225678888 6899999999999999999764
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-41 Score=358.72 Aligned_cols=624 Identities=14% Similarity=0.145 Sum_probs=415.3
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe--
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-- 415 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-- 415 (1092)
..++.+|-.. ++|. -....|.+||+.....-+ ++..|..+++|+|||++|+|+|+|-
T Consensus 41 ~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred Cccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccC
Confidence 4566667665 3332 123689999988765443 2667889999999999999999983
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC--CCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
....+++|++..-..+. ++..|...|+|++|+|.++ ++++.+. |-.|.+||++.......-+ -...|..++|
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~f 173 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVAF 173 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEEE
Confidence 66679999999876555 6788999999999999999 6777664 4567889887654433222 3456778888
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCC--ceEEEEEccCCCEEEEEecCC-CC--------ceeEEEEe
Q 001363 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSK-EG--------ESFLVEWN 561 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~--~i~~~~~s~dg~~l~~~~~~~-~~--------~~~i~iwd 561 (1092)
+.||.++++.+ ...|++|.++....... +...+. -.-.+. +..+++.+..-+ .. .+.+.-+.
T Consensus 174 --sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr---~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 174 --SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLR---FNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred --ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccc---cchhhhhhhcCcccccceEEEecccceeeec
Confidence 66888888876 56899999887652211 111110 000000 111111111000 00 11121111
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC----------------------C
Q 001363 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA----------------------G 619 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~----------------------~ 619 (1092)
+.+++.....-. .....|++.+ .+++++|+.+|.|++|+..+-....+++. +
T Consensus 248 --sRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 248 --SRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred --hhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 111111111111 1234555554 57899999999999999877544433321 1
Q ss_pred CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee---eecccccCceeeeeecCCCccccccccCCceeecCCCCC
Q 001363 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV---DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKE 696 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 696 (1092)
...+...++.|++....|.+...|..++|||+.+-..+ ..+--|...|+.+..-|...... .... -|
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~-----~~ac-----lp 391 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSP-----TAAC-----LP 391 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCc-----cccc-----CC
Confidence 12233456889999999999999999999999876443 33445777777766554211100 0000 12
Q ss_pred CCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCccccc
Q 001363 697 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776 (1092)
Q Consensus 697 d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 776 (1092)
.+ -+++++.|++||+|++........... =.++.+-..++..... ..+..
T Consensus 392 ~~-cF~TCSsD~TIRlW~l~~ctnn~vyrR-------------Nils~~l~ki~y~d~~--~q~~~-------------- 441 (1080)
T KOG1408|consen 392 RG-CFTTCSSDGTIRLWDLAFCTNNQVYRR-------------NILSANLSKIPYEDST--QQIMH-------------- 441 (1080)
T ss_pred cc-ceeEecCCCcEEEeecccccccceeec-------------ccchhhhhcCccccCc--hhhhh--------------
Confidence 22 378999999999999875322211100 0011111101111110 00000
Q ss_pred ccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC-
Q 001363 777 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH- 854 (1092)
Q Consensus 777 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~- 854 (1092)
....-++|-.... . .+....++++++||+|++||+|. .|.++||++...+....+..|..+|.|+.||-.
T Consensus 442 d~~~~~fdka~~s------~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~ 513 (1080)
T KOG1408|consen 442 DASAGIFDKALVS------T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV 513 (1080)
T ss_pred hccCCcccccchh------h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch
Confidence 0001111111100 0 02567899999999999999998 599999999999999999999999999999852
Q ss_pred -CCCEEEEEeCCCcEEEEEcCC-ceeeEeeccccCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001363 855 -DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930 (1092)
Q Consensus 855 -d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg--~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 930 (1092)
..++||+++.|..|+|||+.. ..++.++.+|+..|+++.|.-.| ..++++|.|+.|.+--..... .. .+-.-.
T Consensus 514 ~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~--~g-~~f~r~ 590 (1080)
T KOG1408|consen 514 LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS--SG-RLFPRH 590 (1080)
T ss_pred hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc--Cc-eecccc
Confidence 357999999999999999965 46789999999999999998887 789999999976543322100 00 111111
Q ss_pred CCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccC--CCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 931 GVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 931 ~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
.+......+..++..|..+++++ +.|..|+|||+.+|+..+.+... |.+..-.+...|.|-||++...|.++.++|.
T Consensus 591 t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 591 TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred ccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence 11111246889999999999999 78999999999999999886654 4677778889999999999999999999999
Q ss_pred CCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001363 1008 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
.+|++++++. .|+..|. .+.|.+ |...|++.+.||.|.+|.++.
T Consensus 671 ~sgEcvA~m~--------GHsE~VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 671 VSGECVAQMT--------GHSEAVT--GVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhhhhhc--------Ccchhee--eeeecc-cchhheeecCCceEEEEECch
Confidence 9999998887 3555555 567888 689999999999999999864
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-40 Score=351.70 Aligned_cols=509 Identities=15% Similarity=0.184 Sum_probs=379.7
Q ss_pred eecccCCCCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
+.+..|...++|+|||++|+ ++|+|- ....++||++..-..+.. +..|+-.|+|++|+
T Consensus 72 hlvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs 131 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS 131 (1080)
T ss_pred heecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence 44556777999999999998 689986 456799999998776654 66799999999999
Q ss_pred CCCCEEEEEeC--CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE----
Q 001363 406 PDGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY---- 479 (1092)
Q Consensus 406 pdg~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~---- 479 (1092)
|.++|+++.+. |-.|.+||+.-..... -..-...|.+++|+.||. +++|.+ ...|++|.++.++...
T Consensus 132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP 204 (1080)
T KOG1408|consen 132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP 204 (1080)
T ss_pred CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence 99999998764 5578899887543222 123456799999999999 788888 5689999987665210
Q ss_pred ---------EE------------------------ecC-----------------CcCeEEEeecccCCccEEEEEecCC
Q 001363 480 ---------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDG 509 (1092)
Q Consensus 480 ---------~~------------------------~~~-----------------~~~v~~i~~~~~~~~~~l~s~~~dg 509 (1092)
.+ .|| +..-+|++. +.++|+.|+.+|
T Consensus 205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g 280 (1080)
T KOG1408|consen 205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG 280 (1080)
T ss_pred ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence 00 000 011123333 346899999999
Q ss_pred eEEEEEcCCCCceEEecC--------------------C----CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 510 KIKAWLYDSLGARVDYDA--------------------P----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 510 ~i~vwd~~~~~~~~~~~~--------------------~----~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.|++++..+..-..++.. . -.....+.|++....|.+... +..+++||++.-
T Consensus 281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV 356 (1080)
T ss_pred eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence 999998765432222110 0 012356788888888888875 667999999876
Q ss_pred eEEEEEeeccccCCceEEEEEcCC-----------CCEEEEEeCCCcEEEEECCCCceEEEE-------------e----
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTI-------------D---- 617 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~s~dg~i~iwd~~~~~~~~~~-------------~---- 617 (1092)
+.+......-.|...|+.+.--|. ...+++++.|++||+|++..+..-..+ .
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~ 436 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST 436 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence 554333222222356666554441 235889999999999999763211100 0
Q ss_pred ------------------CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccc
Q 001363 618 ------------------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1092)
Q Consensus 618 ------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1092)
.-+....+.+++.+|+|++||+|..-|.++||++.+.+....+..|...|.|+.++-..
T Consensus 437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~--- 513 (1080)
T KOG1408|consen 437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV--- 513 (1080)
T ss_pred hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch---
Confidence 00122458899999999999999999999999999999999999999999999998221
Q ss_pred cccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCC--cEEEEeecCCe
Q 001363 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGV 757 (1092)
Q Consensus 680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~ 757 (1092)
-..++|++++.|.-|.++|... .+.+.....+|...|+++.|.-+| ..+++++.|..
T Consensus 514 ----------------~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HSssITsvKFa~~gln~~MiscGADks 572 (1080)
T KOG1408|consen 514 ----------------LTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS 572 (1080)
T ss_pred ----------------hhhHhhhhccCCceEEEEeccc-----ccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence 1357899999999999999652 233333346799999999999888 77899999977
Q ss_pred eEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee
Q 001363 758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 836 (1092)
Q Consensus 758 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~ 836 (1092)
+.+-..+.. .+|.......-+ -....+..+++.|..++++++. |..|+||++++++..
T Consensus 573 imFr~~qk~-------------------~~g~~f~r~t~t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 573 IMFRVNQKA-------------------SSGRLFPRHTQT--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred hheehhccc-------------------cCceeccccccc--cccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 765322211 011101110000 1345678999999999999998 799999999999999
Q ss_pred EEecC---CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001363 837 LTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913 (1092)
Q Consensus 837 ~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iw 913 (1092)
+.|++ |.+....+...| .+.|||+.+.|+++.++|..+|+++.+..||+..|+.+.|++|-+.|++++.||.|.||
T Consensus 632 k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence 99975 556788999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCC
Q 001363 914 DVDG 917 (1092)
Q Consensus 914 d~~~ 917 (1092)
.+..
T Consensus 711 ~lp~ 714 (1080)
T KOG1408|consen 711 KLPL 714 (1080)
T ss_pred ECch
Confidence 9864
No 15
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.9e-39 Score=341.48 Aligned_cols=643 Identities=15% Similarity=0.167 Sum_probs=436.1
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC---EEEEEeC
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAYS 416 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~---~las~~~ 416 (1092)
.+|.|.+ ++|.|. ...|.+||........ .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456666 466654 3789999987653333 3889999999999999888 8999999
Q ss_pred CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc--eeEEEecCCcCeE--EEe
Q 001363 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVY--SLC 492 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~--~i~ 492 (1092)
|+.|.+|.++. +.+.....+.+|...+.|+. .... ...+...|+++.+||.+..+ ++..+.-....+. +++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999993 44555667777766655544 3222 22223789999999985555 3333333333333 334
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEccCCC---EEEEEecCCCCceeEEEEeCCCCe-
Q 001363 493 PHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA- 566 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~dg~---~l~~~~~~~~~~~~i~iwd~~~~~- 566 (1092)
+.+.++.-+++.|+.+..|.++.-... .....+.+|...|.+++|...+. +|++++. |..|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecCC
Confidence 444334345666777778888855433 34557899999999999987655 4555543 7889999764322
Q ss_pred --------------------EEEE----------EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEE
Q 001363 567 --------------------IKRT----------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLT 614 (1092)
Q Consensus 567 --------------------~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~ 614 (1092)
.... +.||. +.|+++.|+|.+..|++++.|.++.+|...+. -.+.
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~ 305 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD 305 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence 1111 23566 99999999999999999999999999987654 3333
Q ss_pred EEeC---CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC---ceeeecccccCceeeeeecCCCccccccccCCce
Q 001363 615 TIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1092)
Q Consensus 615 ~~~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 688 (1092)
.... .+........-|+|+++.+++-+..|..++|...+. .....+.||...|..++|.
T Consensus 306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~--------------- 370 (764)
T KOG1063|consen 306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD--------------- 370 (764)
T ss_pred EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec---------------
Confidence 3321 122234678999999999999999999999994443 3444677999999999997
Q ss_pred eecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCc
Q 001363 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 768 (1092)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~ 768 (1092)
|.|.++++.+.|.+-|+|-.- +.......+..|+ .|...+.++++-+..-.+++++....+++|+.+..-.
T Consensus 371 -------psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQ-iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 371 -------PSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQ-IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred -------CCCCEEEEeccccceeeeccc-ccccceeeecccc-cccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence 678899999999999998755 2222234444443 5899999999999666688999999999999765321
Q ss_pred CcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE-EEEeCCeEEEE-------------Ec----
Q 001363 769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL-FSASGGVISLY-------------IV---- 830 (1092)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l-~~~sdg~i~iw-------------d~---- 830 (1092)
+......|.+....+. ......|..+-.|...-+. .+-+.+.-..| ..
T Consensus 442 ------------~~l~~i~g~~~~~~~~--~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed 507 (764)
T KOG1063|consen 442 ------------KSLMAICGKCFKGSDE--LPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED 507 (764)
T ss_pred ------------HHHHHHhCccccCchh--cccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence 0000000100000000 0012223333333221111 00000100000 00
Q ss_pred -----CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCE
Q 001363 831 -----MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNI 900 (1092)
Q Consensus 831 -----~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~ 900 (1092)
.....++.+.+|..+|.+++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.|+|||||++
T Consensus 508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~ 586 (764)
T KOG1063|consen 508 QLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRY 586 (764)
T ss_pred HHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcE
Confidence 01223456789999999999999 899999988654 7899999999989999999999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCc--eeeee-eccC
Q 001363 901 LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPI 976 (1092)
Q Consensus 901 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~--~~~~~-~~~~ 976 (1092)
|+++|+|+++.+|.......... .+...+.|.. -|.++.|+||+.++|+ +.|.+|++|..... +.+.. -...
T Consensus 587 LLsvsRDRt~sl~~~~~~~~~e~-~fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~ 662 (764)
T KOG1063|consen 587 LLSVSRDRTVSLYEVQEDIKDEF-RFACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK 662 (764)
T ss_pred EEEeecCceEEeeeeecccchhh-hhccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhc
Confidence 99999999999999865432221 2233444443 6899999999999999 68999999999877 55544 2345
Q ss_pred CCCCEEEEEEecC-----CCEEEEEECCCcEEEEEcCCCce---EEeecc-ccccCCCCccccccceEEEECCC------
Q 001363 977 SSVPISQATFSCD-----CRMVFTSFVDGTLSIHEASNLEV---QCRILS-TAYLRPTTSCLHVYPHAIAAHPL------ 1041 (1092)
Q Consensus 977 h~~~v~~l~fs~d-----g~~l~t~~~Dg~i~vwd~~~~~~---~~~~~~-~~~~~~~~~~~~v~~~~~~~~p~------ 1041 (1092)
++..|+.+++.|- +..+++|-..|.|.+|....-.. ...+.. ..--+...|.+.|. .++|.|.
T Consensus 663 ~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~--rl~w~p~~~~~~~ 740 (764)
T KOG1063|consen 663 FSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN--RLLWRPTCSDDWV 740 (764)
T ss_pred cCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhh--eeEeccccccccc
Confidence 7899999999872 23677888999999999662111 111111 11111222344555 4566653
Q ss_pred ---CCCEEEEEeCCCcEEEEecC
Q 001363 1042 ---KPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1042 ---d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
+...|++|++|..++++++.
T Consensus 741 ~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 741 EDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccceeEEeeecccceeEEeecc
Confidence 22357999999999999874
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.2e-40 Score=334.42 Aligned_cols=345 Identities=19% Similarity=0.268 Sum_probs=288.8
Q ss_pred CCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCC--CCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001363 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
+|....+.+. |+.+|.+.+|+|-..-++|+|+.|-+.++|++.. +.......+ ..|...--. -...+..|
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l-----rh~~~~~~~--s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL-----RHCIREGGK--SVPSNKDV 238 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh-----hhhhhhhcc--cCCccCCc
Confidence 5666667777 9999999999997765799999999999999874 111110000 001000000 01134689
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
++++|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|...+
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999998743 22 6888999999999999999 89999999999999999999999
Q ss_pred EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+.-|..+-..+.|-. ...+++++.||.|+|+.+....+..++.+|.++|.++.|.|.|.+|++++. |+++++
T Consensus 313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 9999998866666642 257999999999999999999999999999999999999999999999986 778999
Q ss_pred EeCCCCeEEEEEeeccccCCceEEEEEcCCC---------CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
|+.........+..|. ..|+.+.|+|.+ ..+++++.|++|++||+..+.++..+..| ..+|.+++|
T Consensus 386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvaf 460 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAF 460 (524)
T ss_pred eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEe
Confidence 9999999999999988 899999999974 46899999999999999999999998755 457999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc
Q 001363 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1092)
+|+|+++|+|+.||.|.+|+.++++.++...
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~------------------------------------------------- 491 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ------------------------------------------------- 491 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence 9999999999999999999999987776554
Q ss_pred ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001363 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~ 763 (1092)
..+.|..+.|+.+|..+.++.+||.+++-|+
T Consensus 492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 2344677888888888888888888887665
No 17
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.1e-39 Score=342.25 Aligned_cols=623 Identities=13% Similarity=0.115 Sum_probs=418.2
Q ss_pred eeeecccCCCCceEEeecCCCc--eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~--~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...+|.||..+|+|+.|-|+.+ -++++|+.|+.|++|.++......... +.+|...+. +
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~-----------------~~g~~~~~~--c 106 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT-----------------IQGHCKECV--C 106 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe-----------------ecCcceeEE--E
Confidence 4578999999999999998876 147899999999999998444333222 445555554 4
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcc-cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC--ceeEE
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRTYS 480 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~--~~~~~ 480 (1092)
++.......+...|+++.+||.+..+.. .....+.....--.|+++.++.+.++++.|+.+..|.++.-.++ +.+..
T Consensus 107 v~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e 186 (764)
T KOG1063|consen 107 VVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAE 186 (764)
T ss_pred EEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEE
Confidence 4433333333378999999999554411 11111222222345777788666667888888888988875544 45678
Q ss_pred EecCCcCeEEEeecccCC-ccEEEEEecCCeEEEEEcCCCC-----------------ce--------------EEecCC
Q 001363 481 FEGHGAPVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLG-----------------AR--------------VDYDAP 528 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~-----------------~~--------------~~~~~~ 528 (1092)
+.||.+.|.+++|..... .-+|+++|.|..||+|.+.... .. ..+.+|
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 899999999999976544 5689999999999999764322 00 012478
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eEEEEEeecccc--CCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001363 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQ--HNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
...|.++.|+|.+..|++++. |.++.+|.+.+. --+....--... ........|+|+++.+++-+..|..++
T Consensus 267 eDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 267 EDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred ccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 889999999999999998876 566999987654 333332211111 245888999999999999999999999
Q ss_pred EEC-CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC----ceeeecccccCceeeeeecCCCccc
Q 001363 605 WDM-NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVT 679 (1092)
Q Consensus 605 wd~-~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1092)
|.. +........-..++...|..++|+|.|.+|++.+.|.+-|+|..-.. ..+...+.|...++|+++-+
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn----- 417 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN----- 417 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-----
Confidence 983 33344444445567788999999999999999999999999865421 33445566777777777752
Q ss_pred cccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccC------CccccccEEEEEEecCCcEEEEee
Q 001363 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP------SKVKANKISRLTYNNGGQAIFALA 753 (1092)
Q Consensus 680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~------~~~~~~~i~~l~~s~~g~~l~~~~ 753 (1092)
....+++|..+..+|+|+....-...+..+.-+ .......|..+-.|.+.-..= -.
T Consensus 418 -----------------~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~-e~ 479 (764)
T KOG1063|consen 418 -----------------EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG-ET 479 (764)
T ss_pred -----------------CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc-cc
Confidence 244567788888889998542211111111000 001122233333333221100 00
Q ss_pred cCCee-EEEeecCCCcCcCcccccccCCccccCCCCCceeeecC-----CCCCCCCCeeEEEEecCCCEEEEEeC-----
Q 001363 754 SNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT-----TDSNSQEAVPCFALSKNDAYLFSASG----- 822 (1092)
Q Consensus 754 ~dg~i-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l-----~~~~~~~~v~~~~~s~dg~~l~~~sd----- 822 (1092)
.+|.. ..|. + ...+.....+..+.....+....+ +-.+|..+|.+++.+|+|+++|++..
T Consensus 480 ~~G~~~~~~~-e--------t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~e 550 (764)
T KOG1063|consen 480 NTGGEAAVCA-E--------TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKE 550 (764)
T ss_pred ccccccceee-e--------cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCcc
Confidence 11110 0000 0 000011111122222222222211 12369999999999999999999961
Q ss_pred -CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce----eeEeeccccCCeEEEEEcCC
Q 001363 823 -GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDA 897 (1092)
Q Consensus 823 -g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~~~V~~l~~spd 897 (1092)
..|++|+..+...++.+.+|.-.|+.++||| |+++|++.+.|.++.+|...... .....+.|+.-|+++.|+||
T Consensus 551 hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 551 HAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD 629 (764)
T ss_pred ceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc
Confidence 3499999999999999999999999999999 99999999999999999986542 13446789999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC-----CEEEEE-eCCcEEEEEcCC-----
Q 001363 898 LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-----TRFLLV-HETHLAIYEAEE----- 966 (1092)
Q Consensus 898 g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-----~~la~~-~d~~i~lwd~~~----- 966 (1092)
++++||+|+|++|+||........ .+... ........|+.+++.|-. ..+++| ..|.|.+|....
T Consensus 630 e~~FaTaSRDK~VkVW~~~~~~d~---~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~ 705 (764)
T KOG1063|consen 630 EKYFATASRDKKVKVWEEPDLRDK---YISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQV 705 (764)
T ss_pred cceeEEecCCceEEEEeccCchhh---hhhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccc
Confidence 999999999999999999875311 11111 112223478899987632 245566 568999998541
Q ss_pred --cee----eeeeccCCCCCEEEEEEecC----------CCEEEEEECCCcEEEEEcC
Q 001363 967 --LTC----LKQWFPISSVPISQATFSCD----------CRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 967 --~~~----~~~~~~~h~~~v~~l~fs~d----------g~~l~t~~~Dg~i~vwd~~ 1008 (1092)
+.. ...-..+|...|..+.|+|- ...|++|+.|.+++++++.
T Consensus 706 ~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 706 TVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 110 01112357889999999974 2357999999999999875
No 18
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-41 Score=338.33 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=266.7
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC--C
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--G 408 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd--g 408 (1092)
.|.+.+|..+.||+|++ +||||+.+|.++||+..++..+.+ +.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 36678999999999998 799999999999999999877665 8899999999999996 6
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
..+|+|+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999877666 7889999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
.+++|.+ ||.+++||+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+. |++++|||++....+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999955 7789999999999999999999999999999999999999999999999986 778999999999999
Q ss_pred EEEeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 569 RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
.++.+|. +-|..+.|+| .|.+|++++.|++++||...+..+++.+.+|.. .|.++..++|+..+++++.|.+++
T Consensus 381 y~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 381 YTIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred eeccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceee
Confidence 9999998 9999999999 688899999999999999999999999997755 599999999999999999999999
Q ss_pred EEE
Q 001363 648 ILE 650 (1092)
Q Consensus 648 iw~ 650 (1092)
+|.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 995
No 19
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=7.6e-37 Score=330.79 Aligned_cols=580 Identities=16% Similarity=0.171 Sum_probs=420.4
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
..+..-|..++++.+.+.+..+||.+.-..+.. -..+...|+|++-..+ +..+++.. .
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g~-~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASGN-K 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecCc-E
Confidence 455555556788888899999999988776653 2347788998887655 44444333 3
Q ss_pred EEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-cee----EEEecCCcCeEEEeec
Q 001363 420 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 420 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~----~~~~~~~~~v~~i~~~ 494 (1092)
|.+|.. |+.+. ..+.+|.+.|.-+. +-|. .++++..++.+.||+..++ ..+ .-++...+.|+++. +
T Consensus 97 i~~~~r--gk~i~--~~~~~~~a~v~~l~--~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIR--HTTLLHGAKVHLLL--PFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEE--EEeccccceEEEEe--eecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666654 33233 24567777777664 3456 6899999999999998874 221 12233333377764 4
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|.|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 4433457899999999999999999999999999999999999998888888876 677999999999999999976
Q ss_pred cccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 575 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
. +.|+.++|..||+.+++ |+..|.+.+||++..+.+..+... +...+....|-|....+++++.|+++++|-.++
T Consensus 244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na-h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA-HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc-ccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 6 89999999999977655 667799999999998888776522 234688899999999999999999999986653
Q ss_pred C----ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccC
Q 001363 654 S----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 729 (1092)
Q Consensus 654 ~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~ 729 (1092)
+ +.++.-.|
T Consensus 320 ~dg~pR~LR~R~G------------------------------------------------------------------- 332 (910)
T KOG1539|consen 320 GDGVPRLLRSRGG------------------------------------------------------------------- 332 (910)
T ss_pred CCCcchheeeccC-------------------------------------------------------------------
Confidence 3 33333334
Q ss_pred CccccccEEEEEEe-cCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001363 730 SKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808 (1092)
Q Consensus 730 ~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~ 808 (1092)
|..+..++.|. .+|..+..++.|++++.+++-...+...-.. ..+...++...... +..-.-.+|..+
T Consensus 333 ---Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~-~~~~k~p~i~~f 401 (910)
T KOG1539|consen 333 ---HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFS-TEKLKLPPIVEF 401 (910)
T ss_pred ---CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccc-hhhhcCCcceee
Confidence 44444455544 4555555555555555554433222110000 00111100000000 000022345555
Q ss_pred EEecC-----CCEEEEE-eCCeEEEEEcCCcee-eEEec-----CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 809 ALSKN-----DAYLFSA-SGGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 809 ~~s~d-----g~~l~~~-sdg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
++... .+.++.. ++...+.|++..... ...+. .....+++++.++ .|++.+.|+..|.|.+|++++|
T Consensus 402 a~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 402 AFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred ecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC
Confidence 55432 1233333 257799999986554 23332 2336889999999 9999999999999999999999
Q ss_pred eeeEee---ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 877 EVISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 877 ~~~~~l---~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
-....+ ..|.++|++++...-++.++|++.+|.+++||++.... +....- ...+..+..+.....+|+
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~l----~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-----KKSLRL----GSSITGIVYHRVSDLLAI 551 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce-----eeeecc----CCCcceeeeeehhhhhhh
Confidence 999888 58999999999988889999999999999999998542 222221 125788888888888888
Q ss_pred -EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCcccccc
Q 001363 954 -VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1032 (1092)
Q Consensus 954 -~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1032 (1092)
..|-.|.++|+.+.+.++. +.+|+..|++++|||||+||++++.|++|++||+.++.++..+... ..
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~ 619 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SP 619 (910)
T ss_pred hcCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------Cc
Confidence 5677899999999988887 6789999999999999999999999999999999999999777611 12
Q ss_pred ceEEEECCCCCCEEEEEeCC-CcEEEEe
Q 001363 1033 PHAIAAHPLKPTQFAVGLTN-GEVYVIE 1059 (1092)
Q Consensus 1033 ~~~~~~~p~d~~~l~~~~~d-g~v~~w~ 1059 (1092)
+..+.|+| .+++|||+..| ..|++|-
T Consensus 620 ~~sls~SP-ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 620 CTSLSFSP-NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ceeeEECC-CCCEEEEEEecCceEEEEE
Confidence 45789999 58999999999 6899997
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-38 Score=330.11 Aligned_cols=479 Identities=17% Similarity=0.274 Sum_probs=360.2
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+.+..|++.|-+|.|+|...+ +.++-..|.|.|||.++...++.+++ ..-+|.+..|-+-
T Consensus 7 rk~~~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVksfeV-------------------~~~PvRa~kfiaR 66 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKSFEV-------------------SEVPVRAAKFIAR 66 (794)
T ss_pred hHhhccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeeeeee-------------------cccchhhheeeec
Confidence 556678999999999999985 55667789999999999988876332 5679999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCc
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGA 486 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~ 486 (1092)
-+++++|+.|..|+||+..+++.+. .+.+|...|.+++.+|... +++|+|.|-+|++||++.+ .+.++|.||..
T Consensus 67 knWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H 141 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEH 141 (794)
T ss_pred cceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence 9999999999999999999997666 7899999999999999988 8999999999999999876 77899999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC--CEEEEEecCCCCceeEEEEeCCC
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
.|.+++|+|. |...+++++-|++|++|.+....+..++.+|...|.++.+-+-| .+|++++. +..+.+||.++
T Consensus 142 yVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQt 216 (794)
T KOG0276|consen 142 YVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQT 216 (794)
T ss_pred EEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecch
Confidence 9999999987 55799999999999999999999999999999999999998755 58999875 77899999999
Q ss_pred CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
..+++++.||. ..|..+.|+|.-..+++|++||+++||+..+.++..++... ...+.+++-.+.++.+++|.+.|
T Consensus 217 k~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg 291 (794)
T KOG0276|consen 217 KSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEG 291 (794)
T ss_pred HHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCC
Confidence 99999999999 89999999999999999999999999999998888887654 34689999999888999999888
Q ss_pred eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001363 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~ 724 (1092)
.+.+ .+....+...+. +.|+. +|...
T Consensus 292 ~i~v-~lgreeP~vsMd----------------------------------~~gKI-----------iwa~~-------- 317 (794)
T KOG0276|consen 292 SVTV-KLGREEPAVSMD----------------------------------SNGKI-----------IWAVH-------- 317 (794)
T ss_pred cEEE-EccCCCCceeec----------------------------------CCccE-----------EEEcC--------
Confidence 7755 222221111111 11111 12110
Q ss_pred ccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCce--eeecCCCCCCC
Q 001363 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF--MVNDTTDSNSQ 802 (1092)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~l~~~~~~ 802 (1092)
+.|..+-.- +.+..+ ++..|+.+ ...++. .-.
T Consensus 318 ----------~ei~~~~~k-------s~~~~~---------------------------ev~DgErL~LsvKeLg--s~e 351 (794)
T KOG0276|consen 318 ----------SEIQAVNLK-------SVGAQK---------------------------EVTDGERLPLSVKELG--SVE 351 (794)
T ss_pred ----------ceeeeeece-------eccCcc---------------------------cccCCccccchhhhcc--ccc
Confidence 111111100 000000 11111111 000110 011
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee
Q 001363 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
-....++-+|+|+++++++||.-.||..-..+. ...+......|++ |....|+-..++.|+++ ++.+....+
T Consensus 352 iyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi 423 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSI 423 (794)
T ss_pred cchHHhccCCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCceEEE--ecceecccc
Confidence 123457889999999999999999987543322 2445667889999 77778888888999998 666666655
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEE
Q 001363 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 962 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lw 962 (1092)
...-. +..--.|.+|...+ ++.+++||.++++. ++..+-. ...+.|+.+|.+++.+.|...+++
T Consensus 424 ~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~l-----VrrI~v~------~k~v~w~d~g~lVai~~d~Sfyil 487 (794)
T KOG0276|consen 424 RPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGEL-----VRRIEVT------SKHVYWSDNGELVAIAGDDSFYIL 487 (794)
T ss_pred ccccc----eeeecCCceEEEEe-CCeEEEEEcccceE-----EEEEeec------cceeEEecCCCEEEEEecCceeEE
Confidence 42111 11112345555555 55599999998663 3333322 347999999999999888876666
Q ss_pred EcC
Q 001363 963 EAE 965 (1092)
Q Consensus 963 d~~ 965 (1092)
...
T Consensus 488 ~~n 490 (794)
T KOG0276|consen 488 KFN 490 (794)
T ss_pred Eec
Confidence 553
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-39 Score=306.95 Aligned_cols=299 Identities=20% Similarity=0.281 Sum_probs=256.3
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+..+|++|++.|+.++..+.+..++.+++.|.++.+|++......+- .+ ...++||+..|..++.
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G------------~~--~r~~~GHsH~v~dv~~ 71 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG------------VP--VRRLTGHSHFVSDVVL 71 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC------------ce--eeeeeccceEecceEE
Confidence 345789999999999999999877999999999999999876532221 11 1128899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
++||++.++++.|+++++||+.+|+..+ .|.+|...|.+++|++|.+ .+++|+.|++|++||.. |.+..++..+
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~ 145 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHED 145 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecC
Confidence 9999999999999999999999996554 6889999999999999999 69999999999999955 4555555444
Q ss_pred --CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 485 --GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 485 --~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
.+.|++++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+. ++.+.+||+
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL 221 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDL 221 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEc
Confidence 78999999999988899999999999999999999999999999999999999999999999876 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC-------CCCCceEEEccCCC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGT 635 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~ 635 (1092)
+.++.+..+... ..|.+++|+|+...|+.+. +..|+|||++++..+..+..... .+...+++|++||.
T Consensus 222 ~~~k~lysl~a~----~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~ 296 (315)
T KOG0279|consen 222 NEGKNLYSLEAF----DIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ 296 (315)
T ss_pred cCCceeEeccCC----CeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc
Confidence 999998887764 5899999999865555544 45699999999998877754322 23355789999999
Q ss_pred EEEEEeCCCeEEEEECC
Q 001363 636 LLAVIANENRIKILETP 652 (1092)
Q Consensus 636 ~l~~~~~dg~i~iw~~~ 652 (1092)
.|++|..|+.|++|.+.
T Consensus 297 tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEeeecCCcEEEEEee
Confidence 99999999999999864
No 22
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.7e-41 Score=333.90 Aligned_cols=285 Identities=17% Similarity=0.258 Sum_probs=266.2
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 473 (1092)
|.+.+|..+.||+|++.||+|+.+|.+++|+..+...+. ++.+|...|.++.|+|......++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456799999999999999999999999999999875444 89999999999999998422379999999999999999
Q ss_pred CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001363 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
+..++..+.+|...|..++|+| +|++|.|++.|.+-++||+.++.......+|..+|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 9999999999999999999976 6689999999999999999999999999999999999999999999999987
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 632 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 632 (1092)
|..-++||+++|.++..+.+|. .+|..+.|+|+|..+++||.|++++|||++..+.+.++..|.. .|..|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence 6668999999999999999988 9999999999999999999999999999999999999887754 699999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001363 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 633 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l 712 (1092)
.|.+|++++.|++++||...+..+++.+.||.+.|.++.++ +|+..+++++.|.++++
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence 78999999999999999999999999999999999999996 78999999999999999
Q ss_pred ec
Q 001363 713 EK 714 (1092)
Q Consensus 713 w~ 714 (1092)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=303.29 Aligned_cols=294 Identities=17% Similarity=0.250 Sum_probs=268.0
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
..++|+||.+.|.++.|++|.+ .++++|.||.+.|||.-|....+. ++-....|..+||+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~s 106 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYS 106 (343)
T ss_pred eEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEEC
Confidence 4489999999999999999998 589999999999999998877664 44467899999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCC--C-cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 406 PDGSLLGVAYSKHIVQLYAYHGG--S-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~--~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
|.|+++|+|+-|+...||++.+. + ..+...++.+|++.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|.
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEec
Confidence 99999999999999999999865 2 2234446889999999999999886 9999999999999999999999999
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|.+++|.|+|..+++|+. +++.++||+
T Consensus 184 GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDl 258 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDL 258 (343)
T ss_pred CCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEee
Confidence 99999999999876 7789999999999999999999999999999999999999999999999986 777999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
+..+.+..+.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|. ..|.++..+|||.-+++|+.
T Consensus 259 RaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe--NRvScl~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 259 RADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE--NRVSCLGVSPDGMAVATGSW 335 (343)
T ss_pred cCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccC--CeeEEEEECCCCcEEEecch
Confidence 9999998887433 45789999999999999999999999999999999999998775 47999999999999999999
Q ss_pred CCeEEEEE
Q 001363 643 ENRIKILE 650 (1092)
Q Consensus 643 dg~i~iw~ 650 (1092)
|..++||.
T Consensus 336 Ds~lriW~ 343 (343)
T KOG0286|consen 336 DSTLRIWA 343 (343)
T ss_pred hHheeecC
Confidence 99999994
No 24
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=9e-36 Score=322.52 Aligned_cols=546 Identities=13% Similarity=0.153 Sum_probs=404.8
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
..+.+.|+|++-..+-- ++|.| ..|.+|. .|+.+.. +..+|.+.|.-+.. =|.+
T Consensus 73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~~------------------~~~~~~a~v~~l~~--fGe~ 126 (910)
T KOG1539|consen 73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIRH------------------TTLLHGAKVHLLLP--FGEH 126 (910)
T ss_pred CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEEE------------------EeccccceEEEEee--ecce
Confidence 46778999999887754 34443 4566665 3433321 25567777776643 4889
Q ss_pred EEEEeCCCEEEEEEccCC-CcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001363 411 LGVAYSKHIVQLYAYHGG-SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~-~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
++++..++.+.||+..++ +......++. ...+.|+++. +|..---.++.|+.+|.+++|++++++.+++++++...|
T Consensus 127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I 205 (910)
T KOG1539|consen 127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI 205 (910)
T ss_pred EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence 999999999999999884 2211111222 2222377664 554321148889999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
+++.-+|.- ..++.|..+|+|.++++...+.+..+....+.|++++|..||..+.+.+. ..|.+.+||++..+.+
T Consensus 206 T~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 206 TAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLI 280 (910)
T ss_pred eEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeee
Confidence 999876544 58999999999999999999999999988889999999999998776653 2567999999998888
Q ss_pred EEEe-eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--Cc--eEEEEeCCCCCCCCceEEEc-cCCCEEEEEeC
Q 001363 569 RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQ--LLTTIDAGGGLPENPRICFN-KNGTLLAVIAN 642 (1092)
Q Consensus 569 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~--~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~ 642 (1092)
.... .|. +.+....|.|....+++++.|+.+++|=.++ |. .+.... +|..+..++.|. .+|..+.+++.
T Consensus 281 ~v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 281 NVTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred eeeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEeccc
Confidence 7776 444 8899999999999999999999999885553 42 233333 445567889887 68999999999
Q ss_pred CCeEEEEECCCCceeeeccc------------------ccCceeeeeecCCCccccccccCCceeecCCC-CCCCcccee
Q 001363 643 ENRIKILETPESNSVDAAGV------------------LSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-KEDVKPEIS 703 (1092)
Q Consensus 643 dg~i~iw~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~s 703 (1092)
|++++.+++.....-+.+.. .-.+|..+++. ... ....+.+..
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~------------------~~RE~~W~Nv~~~ 417 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE------------------NAREKEWDNVITA 417 (910)
T ss_pred CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc------------------cchhhhhcceeEE
Confidence 99999988763311111110 01112112211 110 122334444
Q ss_pred eccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccc
Q 001363 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1092)
Q Consensus 704 ~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 783 (1092)
.-.+...+.|+......++...-.-+.......+.+++.++-|++.+.|.+.|.|.+|+++.+-.
T Consensus 418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~--------------- 482 (910)
T KOG1539|consen 418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH--------------- 482 (910)
T ss_pred ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee---------------
Confidence 45556788899876555443322222223456789999999999999999999999999876521
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEE
Q 001363 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 862 (1092)
Q Consensus 784 ~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg 862 (1092)
...+- ..+.|..+|+.++...-++.+++++ +|.+.+||..+...+..+. -...++++..+. ...++|.+
T Consensus 483 -------r~sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~ 552 (910)
T KOG1539|consen 483 -------RKSFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIA 552 (910)
T ss_pred -------ecccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhh
Confidence 11110 1124899999999998888888887 8999999999888777776 446778888888 78899999
Q ss_pred eCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEE
Q 001363 863 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 942 (1092)
Q Consensus 863 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l 942 (1092)
..|-.|+++|..+.+.++.+.||++.|++++|||||++|++++.|++|++||+.++.......+. .+..++
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sl 623 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSL 623 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------Ccceee
Confidence 99999999999999999999999999999999999999999999999999999997754432222 257899
Q ss_pred EEccCCCEEEEEe-C-CcEEEEEcC
Q 001363 943 QFHKDQTRFLLVH-E-THLAIYEAE 965 (1092)
Q Consensus 943 ~~s~dg~~la~~~-d-~~i~lwd~~ 965 (1092)
.|||+|.+||+.. | ..|++|.-.
T Consensus 624 s~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 624 SFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EECCCCCEEEEEEecCceEEEEEch
Confidence 9999999999953 3 569999743
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.3e-37 Score=292.52 Aligned_cols=287 Identities=15% Similarity=0.179 Sum_probs=265.4
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
+|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ ++++|+.|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 388999999999999999999999999999999998865333 4556778899999999999 89999999999999
Q ss_pred ECCCC------ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCE
Q 001363 471 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 543 (1092)
Q Consensus 471 d~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~ 543 (1092)
++.+. +..+.+.+|.+.+.++.|.. | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99865 34577899999999999964 3 5799999999999999999999999999999999999999 9999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
+++|+- +...++||++.+.++++|.+|. ..|+++.|.|+|.-+++|++|++.|+||++..+.+..+.......
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 999987 6669999999999999999999 999999999999999999999999999999999999998877778
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
+|++++||..|++|++|..|..+.+||.-.++.+..+.+|.+.|.++..+ |||..+++
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T 332 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT 332 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence 89999999999999999999999999999999999999999999999996 77888999
Q ss_pred eccccccceec
Q 001363 704 VEAENKSEVEK 714 (1092)
Q Consensus 704 ~~~d~~i~lw~ 714 (1092)
|+.|.++|||.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.4e-37 Score=284.17 Aligned_cols=293 Identities=17% Similarity=0.276 Sum_probs=251.4
Q ss_pred ceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc
Q 001363 347 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 426 (1092)
Q Consensus 347 ~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~ 426 (1092)
.-+|++++.|.+|++|...+|.+.++ +....+.|+.+...||+++||+++... |++||+.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~ 69 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLN 69 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEcc
Confidence 35899999999999999999999876 334678999999999999999997665 9999999
Q ss_pred CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe
Q 001363 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506 (1092)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~ 506 (1092)
++..- ...++.+|+..|+++.|..||+ +++|||.||+++|||++...+.+.++ |..+|+++.++| +..-|++|.
T Consensus 70 S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp--nQteLis~d 143 (311)
T KOG0315|consen 70 SNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP--NQTELISGD 143 (311)
T ss_pred CCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC--CcceEEeec
Confidence 98754 5668999999999999999999 89999999999999999977777775 779999999976 446899999
Q ss_pred cCCeEEEEEcCCCCceEEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe------EEEEEeeccccCC
Q 001363 507 VDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQHN 579 (1092)
Q Consensus 507 ~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~~~ 579 (1092)
.+|.|++||+........+ ......|.+++..|||.+++.+.. .|..++|++-++. ++..++.|. +
T Consensus 144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~---~ 216 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN---G 216 (311)
T ss_pred CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---c
Confidence 9999999999988665544 344568999999999999999865 6679999987653 344566666 8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeee
Q 001363 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA 659 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 659 (1092)
.+..+.++|++++|+++|.|.+++||+.++. ....+...++...+..++||.||++|++++.|+..++|++..++.+..
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence 8999999999999999999999999999988 333333344456799999999999999999999999999999999999
Q ss_pred cccccCceeeeeec
Q 001363 660 AGVLSDNLRKLSVN 673 (1092)
Q Consensus 660 ~~~~~~~v~~~~~~ 673 (1092)
..+|.....|++..
T Consensus 296 y~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 296 YQGHHKAAVCVALN 309 (311)
T ss_pred cCCcccccEEEEee
Confidence 99998887777654
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.7e-36 Score=328.67 Aligned_cols=278 Identities=18% Similarity=0.259 Sum_probs=242.1
Q ss_pred ccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeE--------Eeeeeee----ecccccce
Q 001363 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF--------IRNFKVW----DIGACSML 386 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~--------~~~~~~~----d~~~~~~~ 386 (1092)
...+|.-|..++..-...++|..||+|+. +||.|-.|..|++|.+...+... ......- |+..-...
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 56778888888887777999999999998 89999999999999998533111 0000000 11111122
Q ss_pred eeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc
Q 001363 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1092)
Q Consensus 387 ~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~ 466 (1092)
.....+.||+++|..+.|+|+.++|++++.|++|++|.+.+..++- ..+||..+|+++.|+|-|- +++|+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 2334489999999999999999999999999999999999976554 6789999999999999998 8999999999
Q ss_pred EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001363 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
.++|......+++.+.+|-..|.|+.|+| +..++++||.|.++|+||..++..+..+.+|.++|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 99999999999999999999999999977 5579999999999999999999999999999999999999999999999
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
++. ++.|.+||+.+++.+..+.+|. +.|.++.|+.+|..|++|+.|.+|++||+..-.
T Consensus 595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 976 7779999999999999999997 999999999999999999999999999987543
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8e-36 Score=282.97 Aligned_cols=296 Identities=17% Similarity=0.185 Sum_probs=250.1
Q ss_pred ccccccEEEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001363 731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 809 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~ 809 (1092)
.+|.+.|..++..+. ...++.++.|..+.+|++... |...|..... +. +|...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence 459999999999887 556778888999999998764 2334443333 33 4999999999
Q ss_pred EecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc-ccC
Q 001363 810 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSK 887 (1092)
Q Consensus 810 ~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~ 887 (1092)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|++|++|+...........+ |++
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 999999999998 89999999999999999999999999999999 899999999999999999986544444333 388
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEc
Q 001363 888 RVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA 964 (1092)
Q Consensus 888 ~V~~l~~spd--g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~ 964 (1092)
-|.|+.|+|+ ..+++++|.|++|++||+.+ .+..+.+.+|.. .++.+++||||.+.+. +.||.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 9999999998 78999999999999999998 446666777765 8999999999999999 68999999999
Q ss_pred CCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCC
Q 001363 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1044 (1092)
+.++.+.. .+|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+.+...-+ ....+.+.+++++|++ ||.
T Consensus 222 ~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG~ 296 (315)
T KOG0279|consen 222 NEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DGQ 296 (315)
T ss_pred cCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CCc
Confidence 99999765 3588999999999998777655 56679999999999988877544333 2234567778999998 699
Q ss_pred EEEEEeCCCcEEEEecC
Q 001363 1045 QFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1045 ~l~~~~~dg~v~~w~~~ 1061 (1092)
.|++|..|+.|++|.+.
T Consensus 297 tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEeeecCCcEEEEEee
Confidence 99999999999999984
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-34 Score=302.76 Aligned_cols=465 Identities=15% Similarity=0.205 Sum_probs=345.0
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|+..|.++.|+|....++++-.+|.|.|||.++...++ .+.-..-+|.++.|-+--+ ++++|+.|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 34488999999999999999999999999999999987776 5666778999999998877 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~ 549 (1092)
..+++.++.|..|.+.|.+++.+|.. .+++++|.|-+|++||++.. .+..++.+|.+-|..++|.| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999998754 79999999999999999875 45678999999999999999 5678888887
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+++|.+|.+.+..+..++.+|. ..|+++.+-+- ..++++|+.|.+++|||..+..+++++.+|.+ .|..
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~ 232 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF 232 (794)
T ss_pred ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence 6679999999999999999999 89999999764 47999999999999999999999999997755 6999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++|+|.-..+++|+.||+++||+..+-+....+.-.-+.
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleR----------------------------------------- 271 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLER----------------------------------------- 271 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCce-----------------------------------------
Confidence 999999999999999999999998876555444433333
Q ss_pred cccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCC
Q 001363 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 787 (1092)
Q Consensus 708 ~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1092)
+.+++..+.+..++.|..+|.+.+=
T Consensus 272 -----------------------------vW~I~~~k~~~~i~vG~Deg~i~v~-------------------------- 296 (794)
T KOG0276|consen 272 -----------------------------VWCIAAHKGDGKIAVGFDEGSVTVK-------------------------- 296 (794)
T ss_pred -----------------------------EEEEeecCCCCeEEEeccCCcEEEE--------------------------
Confidence 4444444444445555555544430
Q ss_pred CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC--CeEEEE------EcCCceeeE----EecCCCCCeEEEEEcCCC
Q 001363 788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHD 855 (1092)
Q Consensus 788 g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd--g~i~iw------d~~~~~~~~----~~~~~~~~i~~l~~s~~d 855 (1092)
-......+..++.|+.+-+... -.+.+- ++..|+.+. .+....-....++.+| +
T Consensus 297 -------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-N 362 (794)
T KOG0276|consen 297 -------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-N 362 (794)
T ss_pred -------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-C
Confidence 0111122333344433322211 011111 233333221 1111111234678899 8
Q ss_pred CCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001363 856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
|+++++++ ||.-.||..-.-+ ..+-+.-....|++|.+..|.--.++.|+++ +..+. .+....
T Consensus 363 GrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke-----~ksi~~---- 425 (794)
T KOG0276|consen 363 GRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKE-----HKSIRP---- 425 (794)
T ss_pred CcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--eccee-----cccccc----
Confidence 98877655 8988898643211 1244556778999998888888888889988 33221 111111
Q ss_pred CCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
-..+.+--.|.+|.+..++.+++||..+++.++.+-. ....+.|+.+|.+++.++.| +.++..+
T Consensus 426 ---~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~-Sfyil~~ 489 (794)
T KOG0276|consen 426 ---DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDD-SFYILKF 489 (794)
T ss_pred ---ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecC-ceeEEEe
Confidence 1113334456777778899999999999999987542 35678999999988888755 4455543
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-34 Score=311.92 Aligned_cols=584 Identities=16% Similarity=0.231 Sum_probs=404.9
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
...+..|-.++|+|... .+.++-..|.|.+||..-+.++.. +.+|.++|..++|+|++.+
T Consensus 6 EskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qpl 65 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPL 65 (1202)
T ss_pred hcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCe
Confidence 34466899999999998 577778889999999999988875 6789999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1092)
+++|+.|..|+||+..+.+++. ++.||-..|..+.|++.-. +++|+|.|.+|+||++.+++++..+.||...|.|
T Consensus 66 FVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMc 140 (1202)
T KOG0292|consen 66 FVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMC 140 (1202)
T ss_pred EEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEe
Confidence 9999999999999999987666 7889999999999999877 8999999999999999999999999999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001363 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1092)
..|+|+.| .++|+|-|.+||+||+...+....-.+ ++.-...+..+. .-++-...--....
T Consensus 141 AqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 141 AQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKHV 201 (1202)
T ss_pred eccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeeee
Confidence 99988764 899999999999999976554332221 010001111110 00111111223456
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 650 (1092)
+.||. ..|+.++|+|.-..+++|++|..|++|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||
T Consensus 202 LEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 202 LEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred ecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 78888 899999999999999999999999999987655544444456677899999999999999999999999999
Q ss_pred CCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCC-----CCCCccceeeccccccceeccccccCccccc
Q 001363 651 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1092)
Q Consensus 651 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~ 725 (1092)
+...+.++.++...+..+.++..|.....+.|-..|-+.|.-+. .-.++.+.-.- |..|+-+|+.+........
T Consensus 279 m~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVAS 357 (1202)
T ss_pred cccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeEe
Confidence 99999999999999999999999999999999999988884332 22344444333 7788888887755555554
Q ss_pred cccCCccccccEEEEEEecCCcEEEEee--cCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCC
Q 001363 726 LLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 803 (1092)
Q Consensus 726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~ 803 (1092)
+..+.. ...++.++.++|....++.++ .+|...++.++......... ... . ...
T Consensus 358 lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~------------~~~-------~----k~t 413 (1202)
T KOG0292|consen 358 LRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG------------KDV-------K----KGT 413 (1202)
T ss_pred ccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc------------hhh-------h----cCC
Confidence 443332 235678899999776555553 34777777766542110000 000 0 111
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec
Q 001363 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 883 (1092)
....+-.+.++-.+..-++..+.+-++.. +..+.+... ..+..+-+.- .|.+|+. ....|.+||++..+.+..+.
T Consensus 414 G~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 414 GEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK 488 (1202)
T ss_pred CCceEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe
Confidence 22233333332222222234444444432 222222211 2333444444 5655553 34579999999888777776
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEE
Q 001363 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 963 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd 963 (1092)
...|.-+.||+|..++|--+. .+|.|.+.+-. .+....... .|.+-+|..+|-+|.+..+.- + |-
T Consensus 489 --~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL~------l~~sihEti----riksgawde~gVfiYtT~nHi-k-Ya 553 (1202)
T KOG0292|consen 489 --VSKVKYVVWSNDMSRVALLSK-HTITIADKKLE------LLCSIHETI----RIKSGAWDEDGVFIYTTLNHI-K-YA 553 (1202)
T ss_pred --cCceeEEEEcCccchhhhccc-ceEEEEecchh------heecchhee----EeeeceeccCceEEEEehhhh-h-hh
Confidence 467899999999988887664 45888876541 222222222 477888888888877643211 0 11
Q ss_pred cCCce--eeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCce
Q 001363 964 AEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 964 ~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
+.+|. .+++ + ..++.- +--.|..++.-..|+.++..+++.-+.
T Consensus 554 l~~GD~GIikT-L---d~~iyi--tkv~gn~V~cl~rd~~~~~~~IDptEy 598 (1202)
T KOG0292|consen 554 LENGDSGIIKT-L---DKPIYI--TKVKGNKVFCLNRDGEIECLTIDPTEY 598 (1202)
T ss_pred hccCCcceEEe-c---ccceEE--EEeeCCEEEEEecCCCeEEEeechHHH
Confidence 11111 1111 0 112221 223577777777888888888776443
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-36 Score=296.54 Aligned_cols=292 Identities=22% Similarity=0.337 Sum_probs=268.2
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
+..+.|.||...|+.+-|+|+-. ++++++.|++|++||..+|+.... +.||...|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 56688899999999999999997 899999999999999999998765 8899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
+..|++||+++.|-.+++||.++- .++...+.+|...|.+++|-|.|. ++++++.|.+|+.|+..+|.++++|.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999863 233336779999999999999998 8999999999999999999999999999
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC---------------CCEEEEEec
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN---------------GRRLFSCGT 549 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d---------------g~~l~~~~~ 549 (1092)
...|..+.. ..||.++++++.|.++++|-+.+..+...+..|+.+|.+++|.|. +.++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999998887 668899999999999999999999999999999999999999773 246666654
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
|++|++||+.+|.++.++.+|. +.|..++|+|.|++|+++.+|+++++||+.+++++..+..|.+ .++++.
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD 383 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD 383 (406)
T ss_pred ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence 7789999999999999999999 9999999999999999999999999999999999999997766 489999
Q ss_pred EccCCCEEEEEeCCCeEEEEEC
Q 001363 630 FNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
|..+..++++|+-|.++++|..
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999974
No 32
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=8.7e-33 Score=282.30 Aligned_cols=538 Identities=12% Similarity=0.156 Sum_probs=383.9
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.+-..-++|+. -=..+-+-|.|..+...+ +.+.+++++...... +.+|+..|.|++
T Consensus 56 LewvygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~ 111 (626)
T KOG2106|consen 56 LEWVYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMA 111 (626)
T ss_pred eEEEEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEe
Confidence 34455666764 333466778887443333 456777776533222 678999999999
Q ss_pred ECCCCCEEEEEeCCC--------EEEEEEccCCCcccceEEEcccccceeEEEEecCC--CcEEEEEEeCCCcEEEEECC
Q 001363 404 WSPDGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC--KQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 404 ~spdg~~las~~~d~--------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~--~~l~l~s~~~d~~i~vwd~~ 473 (1092)
.+||.-.+|+|-..| .++|||..+-. .+..+......|.|++||+-. ..+..+--+.+..+.|||+.
T Consensus 112 vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~---TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWq 188 (626)
T KOG2106|consen 112 VHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS---TLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQ 188 (626)
T ss_pred ecCCceeeccCcccccCCCcCCCeeeecccccce---eeeeeccccccceeeeecccCCCceEEEecCCCccccchhhch
Confidence 999999999874333 59999987643 333566667789999999853 32233334566789999999
Q ss_pred CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE---ecC-CCCceEEEEEccCCCEEEEEec
Q 001363 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDA-PGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~-~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
.+......+.....|....|+|... -++.....|.+.+|+++.+..... +.. ...-|.+++|.++|..+ ++
T Consensus 189 k~~~~~~vk~sne~v~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-Tg-- 263 (626)
T KOG2106|consen 189 KKAKLGPVKTSNEVVFLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TG-- 263 (626)
T ss_pred hhhccCcceeccceEEEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE-ee--
Confidence 9998888888888899999998753 344455568999999987765443 222 22579999999999865 33
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
+.++.|.+|+..+.+..+....|. +.|.+++...+|. |++|+.|..|..|| ..-+.++..+.+.....+..++
T Consensus 264 --DS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 264 --DSGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred --cCCceEEEEeCCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEe
Confidence 447889999998888777766666 9999999999886 55699999999999 5555566555555555566555
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccc
Q 001363 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 709 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 709 (1092)
=...+ +++|+..+.|..=.+.++-.+.
T Consensus 337 e~~~d--i~vGTtrN~iL~Gt~~~~f~~~--------------------------------------------------- 363 (626)
T KOG2106|consen 337 EGKGD--ILVGTTRNFILQGTLENGFTLT--------------------------------------------------- 363 (626)
T ss_pred cCCCc--EEEeeccceEEEeeecCCceEE---------------------------------------------------
Confidence 33222 6666665555433333221110
Q ss_pred cceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCC
Q 001363 710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 789 (1092)
Q Consensus 710 i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 789 (1092)
..+|......++..|+...+++++.|+.+++|+ . .+ .+|...
T Consensus 364 --------------------v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k-------------~~wt~~--- 405 (626)
T KOG2106|consen 364 --------------------VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HK-------------LEWTKI--- 405 (626)
T ss_pred --------------------EEecccceeeEEcCCChhheeeccCcceEEEcc-C-Cc-------------eeEEEE---
Confidence 123666777788888888899999999999987 1 11 112211
Q ss_pred ceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 001363 790 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 868 (1092)
Q Consensus 790 ~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v 868 (1092)
-..+..|+.|+|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||+|+.|+.|
T Consensus 406 -----------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 406 -----------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHI 471 (626)
T ss_pred -----------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeE
Confidence 35678899999999 888887 69999999999665554444 78999999999 99999999999999
Q ss_pred EEEEcCCce-eeEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeee---------ee---eecCCCCcC
Q 001363 869 LIYNARSSE-VISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC---------RS---LQTPDGVMT 934 (1092)
Q Consensus 869 ~iwd~~~~~-~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~---------~~---~~~~~~~~~ 934 (1092)
+||.+.... ...+.. .|..+|+.+.||+|+++|.+.+.|-.|..|.-..-+.... .+ .....+.
T Consensus 472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s-- 549 (626)
T KOG2106|consen 472 YIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGS-- 549 (626)
T ss_pred EEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEeccc--
Confidence 999987643 332222 2448999999999999999999999999994332111110 00 1111111
Q ss_pred CCCCceEEEEccCCCEEEEEeC-CcEEEEEcCCce--eeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 935 LAPSETHIQFHKDQTRFLLVHE-THLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 935 ~~~~v~~l~~s~dg~~la~~~d-~~i~lwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
....|..++-+...+++|++.| |+|++|...-.+ .....+.+|++-|++++|+.+..++++.+.|.+|..|++
T Consensus 550 ~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 550 DGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 1235677788888899999754 899999886333 233346789999999999999999999889999999986
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5e-35 Score=287.82 Aligned_cols=335 Identities=15% Similarity=0.190 Sum_probs=290.5
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...+.++..|++.|.+++.+|+.+ ++|||+.|....||++.+|+.... +.+|+..|+++.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~ 113 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCS 113 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEE
Confidence 345688999999999999999776 899999999999999999997765 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
||.||.+||+|+.+|.|+||+..++.... .+...-+.|.-+.|+|-+. +|+.|+.||.+-+|.+.++...+.+.|
T Consensus 114 FshdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 114 FSHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred EccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecC
Confidence 99999999999999999999999987554 4545666788999999988 899999999999999999888999999
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-CCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
|..++++=.|.| +|+.++++..||+|++|+..+..+....... .....++.++.++..++.|.. ++.+++.+.
T Consensus 189 h~~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~ 262 (399)
T KOG0296|consen 189 HNSPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNN 262 (399)
T ss_pred CCCCcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcc
Confidence 999999999955 6899999999999999999999988877643 346678899999999988875 566888888
Q ss_pred CCCeEEEEEee--------ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 563 SEGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 563 ~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
.+|+.+....+ +......|.++.++..-+..++|+.||+|.|||+...++....... ..|..+.|-+ .
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he---~~V~~l~w~~-t 338 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE---DGVTKLKWLN-T 338 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC---CceEEEEEcC-c
Confidence 88888877663 2312234555566666778899999999999999988777776554 3489999998 7
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceec
Q 001363 635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~ 714 (1092)
.+|++++.+|.|+.||.++++......+|...|.+++++ |+++++++++.|++.++|+
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred chheeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEe
Confidence 899999999999999999999999999999999999996 7899999999999999987
Q ss_pred c
Q 001363 715 P 715 (1092)
Q Consensus 715 ~ 715 (1092)
.
T Consensus 397 v 397 (399)
T KOG0296|consen 397 V 397 (399)
T ss_pred c
Confidence 5
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2e-34 Score=283.62 Aligned_cols=339 Identities=18% Similarity=0.230 Sum_probs=286.8
Q ss_pred EEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEE
Q 001363 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1092)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd 515 (1092)
+|..|+..|.+++.+|+.+ +++||+.|....+|++.+|..+..+.+|...|+++.|+ .+|.+|++|+.+|.|+||+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc--cCceEEEecCCCccEEEEE
Confidence 6889999999999999777 89999999999999999999999999999999999995 5789999999999999999
Q ss_pred cCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE
Q 001363 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1092)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1092)
..++.....+......+.-+.|+|.+..|++|+. ++.+.+|.+.++...+.+.||. .++++-.|.|+|+.+++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence 9999999988877888999999999999999976 6669999999988889999988 89999999999999999
Q ss_pred EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCC
Q 001363 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
+..||+|++|++.+++++..+....+ ....++.++..+..++.|..++.+.+-+..+++.+....+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence 99999999999999999998875543 3567899999999999999988888766555432221110
Q ss_pred CccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC
Q 001363 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755 (1092)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 755 (1092)
.+..+....
T Consensus 274 ---------------------------------------------------------------------~~~~l~~~~-- 282 (399)
T KOG0296|consen 274 ---------------------------------------------------------------------TVPELKPSQ-- 282 (399)
T ss_pred ---------------------------------------------------------------------CCccccccc--
Confidence 000000000
Q ss_pred CeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCce
Q 001363 756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK 834 (1092)
Q Consensus 756 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~ 834 (1092)
......|..+.++..-.+.|+|+ ||+|.|||+...+
T Consensus 283 -------------------------------------------e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 283 -------------------------------------------EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred -------------------------------------------hhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 00122334445555666778888 8999999998877
Q ss_pred eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 835 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 835 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd 914 (1092)
....+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.||..+|.+++++|+.++++|+|.|++.+|++
T Consensus 320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 666555 888899999987 56899999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 001363 915 VD 916 (1092)
Q Consensus 915 ~~ 916 (1092)
+.
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 75
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=288.73 Aligned_cols=299 Identities=18% Similarity=0.255 Sum_probs=269.1
Q ss_pred cCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001363 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
+..|-.+.+.+.||-+.|.|+++.|-.. ++++|+.|++|+|||+.+|+...+ +.||-..|
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~v 196 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETV 196 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhhee
Confidence 4556678899999999999999999987 799999999999999999998876 88999999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
..+++|+--.||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.+++|||+++...+.
T Consensus 197 r~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~ 271 (460)
T KOG0285|consen 197 RGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVH 271 (460)
T ss_pred eeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEE
Confidence 999999999999999999999999999998887 5779999999999999988 89999999999999999999999
Q ss_pred EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+.||..+|.++.+.+. ...+++|+.|++|++||+..++....+..|...+.+++.+|....+++++.+ .|..
T Consensus 272 ~l~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----nik~ 344 (460)
T KOG0285|consen 272 VLSGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NIKQ 344 (460)
T ss_pred EecCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----ccee
Confidence 99999999999988654 3579999999999999999999999999999999999999999999998753 4999
Q ss_pred EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe---CCC---CCCCCceEEEccC
Q 001363 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFNKN 633 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~ 633 (1092)
|++..|..+..+.+|. ..+.+++.+.|+ ++++|+++|.+.+||.++|-..+... .++ ....|.+.+|...
T Consensus 345 w~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt 420 (460)
T KOG0285|consen 345 WKLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT 420 (460)
T ss_pred ccCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc
Confidence 9999999999998888 889999998875 88999999999999999986655442 221 2245889999999
Q ss_pred CCEEEEEeCCCeEEEEECCCC
Q 001363 634 GTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 634 ~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
|..|++|..|.+|++|.-...
T Consensus 421 g~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 421 GSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred CceEEeccCCcceEEEecccc
Confidence 999999999999999986643
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.5e-34 Score=266.78 Aligned_cols=295 Identities=17% Similarity=0.261 Sum_probs=252.1
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeecccc
Q 001363 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ 577 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 577 (1092)
-+|++++.|.+||+|...++.+..++......|..+.+.||++.|++++ ...|++||+++++ ++.++.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~-- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT-- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence 4899999999999999999999999999999999999999999999987 4459999999775 588899988
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee
Q 001363 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
..|.++.|..+|+++++||+||+++|||++...+.+.+... ..|+++..+|+...|+++..+|.|++||+.+....
T Consensus 84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 89999999999999999999999999999996666666543 56999999999999999999999999999865332
Q ss_pred eecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccE
Q 001363 658 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 737 (1092)
Q Consensus 658 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i 737 (1092)
..+- |. ....|
T Consensus 160 ~~li-------------------------------------------------------------------Pe--~~~~i 170 (311)
T KOG0315|consen 160 HELI-------------------------------------------------------------------PE--DDTSI 170 (311)
T ss_pred cccC-------------------------------------------------------------------CC--CCcce
Confidence 2111 11 33568
Q ss_pred EEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE
Q 001363 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL 817 (1092)
Q Consensus 738 ~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l 817 (1092)
.++++.|||.+++++...|..++|++...... .... ....+ +.|...+..+.+|||+++|
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-----------s~l~-------P~~k~--~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-----------SELE-------PVHKF--QAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------ccce-------Ehhhe--ecccceEEEEEECCCCcEE
Confidence 89999999999999999999999998653210 0000 00111 2489999999999999999
Q ss_pred EEEe-CCeEEEEEcCCc-eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEc
Q 001363 818 FSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 895 (1092)
Q Consensus 818 ~~~s-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 895 (1092)
|+++ |.+++||+.++. +....+.+|...+..++||. |++||++|+.|+.+++|++..++.+....+|..+..|++..
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9998 899999999988 66778899999999999999 99999999999999999999999999999999988888764
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=266.82 Aligned_cols=292 Identities=22% Similarity=0.338 Sum_probs=241.1
Q ss_pred eeeecccCCCCceEEeecCC-CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 326 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spd-g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..+.+++|++.|+.+||+|- |. +||+|+.|+.|+||+...+.-... +..+-.+|+..|.++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 45889999999999999999 76 899999999999999986433221 22234579999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC---ceeEEE
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF 481 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~ 481 (1092)
+|.|++||+++.|.++.||.-..++ .....++.||...|.|++||++|. +|++|+.|++|-||.+..+ +++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 9999999999999999999988654 455668999999999999999999 8999999999999998754 567888
Q ss_pred ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC---CCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
+.|...|..+.|+|+. .+|++++.|.+|++|+-.. -.+..++.++...|.+++|++.|..|++++. +++++
T Consensus 147 ~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 9999999999999876 4999999999999997663 2357788899999999999999999999976 67799
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------eEEEEeCCCCCCCCceEEEcc
Q 001363 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
+|-..+. +.+ .+...++.+.|. ...|++++.|+.|++|.-...- ++... .+.+...|+++.|+|
T Consensus 221 Iw~~~~~-----~~~--~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 221 IWRLYTD-----LSG--MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNP 290 (312)
T ss_pred eeeeccC-----cch--hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcC
Confidence 9975421 222 124788999998 4679999999999999765421 11111 123345799999999
Q ss_pred C-CCEEEEEeCCCeEEEEECC
Q 001363 633 N-GTLLAVIANENRIKILETP 652 (1092)
Q Consensus 633 ~-~~~l~~~~~dg~i~iw~~~ 652 (1092)
. .++|+++++||.+++|.+.
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 4 7899999999999999864
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-32 Score=295.09 Aligned_cols=500 Identities=17% Similarity=0.197 Sum_probs=356.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+...+..|..++|+|...+++++-..|.|++||..-+.++. .+.+|.++|..++|+|++. +++|||.|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44567889999999999999999999999999999998777 6889999999999999999 999999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
..+.+++.++.||.+.|..+.|++.- .+++|+|.|.+|+||++.+.+++..+++|.+-|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999997644 69999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE---EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
+.+|++||+..-+....-.+.- ...+ .+... +-|+.|- -....+.+| ...|+-+
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~--e~~~-------~~~~~~~dLfg~~Da----------VVK~VLEGH--DRGVNwa 212 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSL--EDQM-------RGQQGNSDLFGQTDA----------VVKHVLEGH--DRGVNWA 212 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCc--hhhh-------hccccchhhcCCcCe----------eeeeeeccc--ccccceE
Confidence 5679999986543322211100 0011 11111 1122222 222344544 4579999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCc--eeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecc
Q 001363 629 CFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1092)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 706 (1092)
+|+|.-.++++|++|..|++|.....+ .+.+.++|.+.|.++.|+ |...++++.+.
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsE 270 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSE 270 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCC
Confidence 999999999999999999999988664 456789999999999997 56788999999
Q ss_pred ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCC
Q 001363 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 786 (1092)
Q Consensus 707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1092)
|+++|+||+......+++.. ...+...++..|..+.++++...| +.+|.++.
T Consensus 271 DksirVwDm~kRt~v~tfrr------endRFW~laahP~lNLfAAgHDsG-m~VFkleR--------------------- 322 (1202)
T KOG0292|consen 271 DKSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELNLFAAGHDSG-MIVFKLER--------------------- 322 (1202)
T ss_pred CccEEEEecccccceeeeec------cCCeEEEEEecCCcceeeeecCCc-eEEEEEcc---------------------
Confidence 99999999987766655532 567788999999999665555544 45555432
Q ss_pred CCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--eEEecCC---CCCeEEEEEcCCCCCEEEE
Q 001363 787 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIMPP---SPTATSLAFNPHDNNVIAI 861 (1092)
Q Consensus 787 ~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--~~~~~~~---~~~i~~l~~s~~d~~~las 861 (1092)
+.+ +.++ ++..|....|..|+-+|+.+.+. +..++.. ..+..++.++|..+..|++
T Consensus 323 ---------------Erp--a~~v--~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 323 ---------------ERP--AYAV--NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred ---------------cCc--eEEE--cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence 222 2333 34445555688999999987553 3344433 3678999999955555555
Q ss_pred EeCC-CcEEEEEcCCceee-Ee-ecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCC
Q 001363 862 GMDD-STILIYNARSSEVI-SK-LEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 937 (1092)
Q Consensus 862 g~~d-g~v~iwd~~~~~~~-~~-l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 937 (1092)
...| |...++.+...... .. -.. ......++ |-..+++.+---.+..+.+-++.....+ -+..+.
T Consensus 384 s~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~-fvarNrfavl~k~~~~v~ik~l~N~vtk---kl~~~~------- 452 (1202)
T KOG0292|consen 384 SNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGAL-FVARNRFAVLDKSNEQVVIKNLKNKVTK---KLLLPE------- 452 (1202)
T ss_pred eccCCCeEEEEEecCcccccCCchhhhcCCCCceE-EEEecceEEEEecCcceEEecccchhhh---cccCcc-------
Confidence 4433 45555655432110 00 000 11112222 2222233332233555666666553211 122221
Q ss_pred CceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 938 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 938 ~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
.+..+-+..+|.+|+. +...|.+||++..+.+..+. -..|..+.||+|..+++--+. .+|.|.+..
T Consensus 453 ~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~K-h~i~i~~kk 518 (1202)
T KOG0292|consen 453 STDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLSK-HTITIADKK 518 (1202)
T ss_pred cccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhccc-ceEEEEecc
Confidence 2445666677776655 45679999999888877754 457889999999888776653 466666643
No 39
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=3.4e-31 Score=270.75 Aligned_cols=523 Identities=14% Similarity=0.194 Sum_probs=375.5
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--------cEEEEEC
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDA 472 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--------~i~vwd~ 472 (1092)
.+-+-|.|..+.... +.+.+++++...+. .+.+|...|.|++.+||-- .+++|-.-| .+++||.
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 356778887776543 34566777653211 3669999999999999865 566554333 5999999
Q ss_pred CCCceeEEEecCCcCeEEEeecccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCE-EEEEec
Q 001363 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR-LFSCGT 549 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~-l~~~~~ 549 (1092)
.+-..++.+......|.+++|++...|.++.... .+..+.+||+..+............+....|.|.+.. +++++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 9988899888888899999999888777776653 4556899999988877777777778889999996655 45554
Q ss_pred CCCCceeEEEEeCCCCeEEEE---EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001363 550 SKEGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
.+.++.|+.+.+...+. +..+. ...|.+++|.++|. +++|..+|.|.||+..+.+..+....| ...|.
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~ 291 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH--DGGVF 291 (626)
T ss_pred ----CceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec--CCceE
Confidence 67799999998876654 44444 36799999999875 889999999999999887777766644 45689
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecc
Q 001363 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 706 (1092)
+++.-.+|.+|- |+.|..|..||-. -+..+...
T Consensus 292 ~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~e--------------------------------------------- 324 (626)
T KOG2106|consen 292 SLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETE--------------------------------------------- 324 (626)
T ss_pred EEEEecCccEee-cCccceEEecccc-cccccccc---------------------------------------------
Confidence 999999998766 9999999999922 21111111
Q ss_pred ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCC
Q 001363 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 786 (1092)
Q Consensus 707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1092)
+|. ..+.|..++-...+ ++.+...+.|..=.++.
T Consensus 325 ---------------------lPe--~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~--------------------- 358 (626)
T KOG2106|consen 325 ---------------------LPE--QFGPIRTVAEGKGD--ILVGTTRNFILQGTLEN--------------------- 358 (626)
T ss_pred ---------------------Cch--hcCCeeEEecCCCc--EEEeeccceEEEeeecC---------------------
Confidence 111 22333333322212 45554444443322211
Q ss_pred CCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001363 787 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 787 ~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
+..+. ..+|......++.+|+...+++++ |+.+++|+ ..+...+.. ...++.|+.|+| .+ .+|.|+..
T Consensus 359 -~f~~~-----v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~ 427 (626)
T KOG2106|consen 359 -GFTLT-----VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTAT 427 (626)
T ss_pred -CceEE-----EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeecc
Confidence 11111 124888899999999999888887 79999999 444444333 456889999999 77 99999999
Q ss_pred CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEc
Q 001363 866 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 945 (1092)
Q Consensus 866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 945 (1092)
|...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|+||.++.+..... .+....+ ..|+.+.||
T Consensus 428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~g-----s~ithLDwS 500 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSG-----SPITHLDWS 500 (626)
T ss_pred ceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE-EeeeecC-----ceeEEeeec
Confidence 9999999999665555444 88999999999999999999999999999987553322 2222233 369999999
Q ss_pred cCCCEEEE-EeCCcEEEEEcCCceeee-----------------eeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 946 KDQTRFLL-VHETHLAIYEAEELTCLK-----------------QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 946 ~dg~~la~-~~d~~i~lwd~~~~~~~~-----------------~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
+|+++|.+ +.|-.|..|.....+.+. .....|+..|..++-|.+.+++++|...|.|++|..
T Consensus 501 ~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 99999999 778889999443222111 112335777788888889999999999999999988
Q ss_pred CCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1008 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
+--...+.+ .....|++.|. +++|.-.| ..|++.+.|..|..|++
T Consensus 581 Pc~s~rA~~-----he~~ghs~~vt--~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 581 PCSSPRAPS-----HEYGGHSSHVT--NVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccCCCcccc-----eeeccccceeE--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence 754443222 22234667677 55666544 55666669999999987
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-33 Score=286.35 Aligned_cols=279 Identities=19% Similarity=0.300 Sum_probs=252.3
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|++++|+.+|. +||+|+.||.++||+...+ .+.+ +..|+++|.++.|+.+|.||+++
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~t-------------------l~~HkgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIST-------------------LGQHKGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhhh-------------------hhccCCceEEEEEcCCCCEEEec
Confidence 5899999999998 8999999999999997644 4433 66799999999999999999999
Q ss_pred eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeec
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 494 (1092)
+.|+++.+||..+|+..+ .+.-|..+-..+.|-.+.. +++++.|+.|+|+-+...+++.++.+|.++|.++.|.
T Consensus 295 ~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred cCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 999999999999987665 4556888777889987776 9999999999999999999999999999999999996
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC---------CEEEEEecCCCCceeEEEEeCCCC
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------RRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg---------~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
+ .+.+|++++.|+++++|..........+..|...|..+.|+|+| ..+++++. +++|++||...+
T Consensus 369 ~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~g 442 (524)
T KOG0273|consen 369 P--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESG 442 (524)
T ss_pred C--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCC
Confidence 5 56899999999999999998888889999999999999999965 35777765 778999999999
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1092)
.++..|..|. .+|++++|+|++.++++|+.||.|.+|+..+++..+.....+ .|..++|+.+|..+.++..|+.
T Consensus 443 v~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 443 VPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred ceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999988 999999999999999999999999999999999999987654 4899999999999999999999
Q ss_pred EEEEECC
Q 001363 646 IKILETP 652 (1092)
Q Consensus 646 i~iw~~~ 652 (1092)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998864
No 41
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.2e-30 Score=273.13 Aligned_cols=550 Identities=12% Similarity=0.114 Sum_probs=387.6
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
..+|.++|||.+.+.||.+-.+|.|.||++..+-.... .+.++. ..|.+++|++.++ |.+.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 46899999999999999999999999999998654433 455554 5799999997665 99999999999999999
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEEEEccCCCEEEEEecCCC
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
++.++.+....+.|.+++.++.. ..++.|+.||.+..++......... +....+.+.+++|+|++..++.|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 99999999999999999997755 6899999999777777666555443 3334578999999999999999986
Q ss_pred CceeEEEEeCCCCeEEEEEeec----cc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 553 GESFLVEWNESEGAIKRTYQGL----QL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~----~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
++.|++||..++..+...... .. ..--|+++.|-.+ ..+++|...|+|.+||...+.+++....+. ..|.+
T Consensus 175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~--adVl~ 250 (691)
T KOG2048|consen 175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHD--ADVLA 250 (691)
T ss_pred -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhh--cceeE
Confidence 778999999999877632211 10 1234778888755 579999999999999999999999888774 46999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++..+++.++++++.|+.|.-|...++..-
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------------------------------------------- 280 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------------------------------------------- 280 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc--------------------------------------------------
Confidence 999999999999999999988877654210
Q ss_pred cccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCC
Q 001363 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 787 (1092)
Q Consensus 708 ~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1092)
|-.. .+...|...|.++++.++ .+++++.|.++.+-.....+. .+
T Consensus 281 -----wv~~-----------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~--- 325 (691)
T KOG2048|consen 281 -----WVIN-----------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD--- 325 (691)
T ss_pred -----eeee-----------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---
Confidence 1100 011237778888888887 688888888777632211000 00
Q ss_pred CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce---------eeEEecCCCCCeEEEEEcCCCCCE
Q 001363 788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---------TILTIMPPSPTATSLAFNPHDNNV 858 (1092)
Q Consensus 788 g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~---------~~~~~~~~~~~i~~l~~s~~d~~~ 858 (1092)
. .+.... .. -.-+...|..++++.-.+..+.+|.+.+.- +.+-.......|.+.+.|| +|++
T Consensus 326 h--~~~~~~----p~--~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~ 396 (691)
T KOG2048|consen 326 H--RQKNLF----PA--SDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNL 396 (691)
T ss_pred h--hccccc----cc--cceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCE
Confidence 0 000000 00 112345566666766677888889876541 1222233456899999999 9999
Q ss_pred EEEEeCCCcEEEEEcCCceee-----EeeccccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCC
Q 001363 859 IAIGMDDSTILIYNARSSEVI-----SKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGV 932 (1092)
Q Consensus 859 lasg~~dg~v~iwd~~~~~~~-----~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 932 (1092)
++.+. -..++||.+.....+ .....-.-....+.|+-|++.++.++ .+..+.+.++++...+....++.. ..
T Consensus 397 Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~ 474 (691)
T KOG2048|consen 397 IAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AK 474 (691)
T ss_pred EEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cC
Confidence 99876 456888888753222 12222344677899999998888888 777888888887654333233222 12
Q ss_pred cCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCC
Q 001363 933 MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 933 ~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
. +.|..++.||||++||+ +..+.|.+|++++++.-... ..-...|+.++|+| +-..|+.+..++.+.-||++..
T Consensus 475 ~---~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~-~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 475 C---PSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK-VRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred C---CcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch-hccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence 2 37999999999999999 78899999999988765432 22358899999995 5567888889999999999544
Q ss_pred ceEEeeccc--cccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1011 EVQCRILST--AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1011 ~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.+ .++... ..+|..+..-.-....+.|+|.+ ...+...+.+-+++.|+.
T Consensus 551 ~l-~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n-~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 551 NL-TRWSKNNTRNLPKEPKTLIPGIPGISFDPKN-SSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred hh-hhhhhccccccccChhhcCCCCceEEeCCCC-ccEEEEEcCcEEEEEecC
Confidence 42 222100 11111111111112346677753 444445556667777763
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=269.39 Aligned_cols=290 Identities=18% Similarity=0.234 Sum_probs=252.2
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
..|.||+++|..+.|+|+|. ++|+|+.|..|.+|++.....-. -.+++|.++|..+.|.+|
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRD 101 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccC
Confidence 55789999999999999998 79999999999999976433221 127799999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
+..|++++.|.+|+.||+++|++.+ .+++|..-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++. ....
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence 9999999999999999999998777 67899999999996666665 78899999999999999999888875 4567
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC----
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES---- 563 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~---- 563 (1092)
++++.|.. ++..+++|+-|+.|++||++.......+.+|..+|+.+..+++|.++.+-+. +..+++||.+
T Consensus 177 ltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 177 LTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence 88999854 5568999999999999999999999999999999999999999999998875 7789999987
Q ss_pred CCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 564 EGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
...++..+.++... ......++|+|++..+-+|+.|..+++||......+..+++|. ..|+++.|+|....+.+++.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEecc
Confidence 34557888887511 1345678999999999999999999999999989998888764 46999999999999999999
Q ss_pred CCeEEEE
Q 001363 643 ENRIKIL 649 (1092)
Q Consensus 643 dg~i~iw 649 (1092)
|.+|++=
T Consensus 329 dk~i~lg 335 (338)
T KOG0265|consen 329 DKTIYLG 335 (338)
T ss_pred CceeEee
Confidence 9998874
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.7e-33 Score=267.64 Aligned_cols=286 Identities=18% Similarity=0.296 Sum_probs=249.6
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|.+.|..+.|.+|+. .+++++.|++|+.||
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGWD 118 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEEe
Confidence 78999999999999999999999999999999986543 33447889999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+++|++++.+++|...|+++... ..+-.++.+++.||++++||++......++. ....++++.|..++..+++++-
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI-- 194 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI-- 194 (338)
T ss_pred cccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc--
Confidence 99999999999999999999843 2344688899999999999999877766654 3447899999999999999987
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeCCCCCCC--C
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPE--N 625 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~--v 625 (1092)
++.|.+||++.+.....+.||. ++|+.+..+|+|.++++-+.|.++++||++.. +++..+..+.+.-. .
T Consensus 195 --dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 --DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred --cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 4459999999999999999999 99999999999999999999999999998753 44666666544332 4
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001363 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
..++|+|+++.+.+|+.|..+++||......+..+.+|...|.++.|.| ....+.+++
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~~ 327 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSCS 327 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEec
Confidence 5789999999999999999999999999999999999999999999985 455667777
Q ss_pred cccccce
Q 001363 706 AENKSEV 712 (1092)
Q Consensus 706 ~d~~i~l 712 (1092)
.|.++.+
T Consensus 328 sdk~i~l 334 (338)
T KOG0265|consen 328 SDKTIYL 334 (338)
T ss_pred cCceeEe
Confidence 7776654
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-33 Score=259.14 Aligned_cols=292 Identities=15% Similarity=0.215 Sum_probs=253.4
Q ss_pred CCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001363 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
.+|...+.+|..|.+.|.++.|+-||+| ..+++.|.+|++|+...|.++++ ..+|...|.
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVl 63 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVL 63 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceee
Confidence 4577778899999999999999999995 67778899999999999999987 779999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC--Ccee
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSRT 478 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~--~~~~ 478 (1092)
.++.+.|...+++|+.|..|.+||+++|+.++ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||-++ -+++
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence 99999999999999999999999999998777 7899999999999999999 899999999999999875 4678
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
+.+......|.++.+ .+..+++|+.||++|.||++.+.....+ .+.+|++++|++|++..++++. ++.++
T Consensus 139 Qildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlr 208 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLR 208 (307)
T ss_pred chhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceee
Confidence 888888899999987 4468999999999999999987654443 4568999999999999988876 67799
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001363 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
+.|-.+|+++..+.||......+ .++++.....+++|++||.|++||+.....+..+..+.. ..+..++++|....++
T Consensus 209 LlDk~tGklL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFI 286 (307)
T ss_pred ecccchhHHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCcccee
Confidence 99999999999999998333333 456777778999999999999999999999999887754 4578999999877777
Q ss_pred EEeCCCeEEEEE
Q 001363 639 VIANENRIKILE 650 (1092)
Q Consensus 639 ~~~~dg~i~iw~ 650 (1092)
++... .+..|.
T Consensus 287 ~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 287 TATGH-GDLFWY 297 (307)
T ss_pred EecCC-ceecee
Confidence 77654 455554
No 45
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-33 Score=275.93 Aligned_cols=285 Identities=20% Similarity=0.286 Sum_probs=264.3
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|..+|+.+-|+|+-...++++.|++|++||..+|+..+ .++||+..|..++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 77899999999999999999999999999999999998755 7899999999999999999 899999999999999
Q ss_pred CCC-CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 472 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.++ .++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|+++++-++.++.+|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 67888999999999999998764 69999999999999999999999999999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCceEEE
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT 615 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1092)
+.+|++|-..++++...+..|+ .+|.+++|.|. ++++.+++.|++|++||+.++.++.+
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 6679999999999999999998 89999999763 25889999999999999999999999
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCC
Q 001363 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (1092)
+.+|. ..|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-++++.|.
T Consensus 330 L~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh---------------------- 385 (406)
T KOG0295|consen 330 LVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH---------------------- 385 (406)
T ss_pred Eeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence 98775 479999999999999999999999999999999999999999999999886
Q ss_pred CCCccceeeccccccceec
Q 001363 696 EDVKPEISVEAENKSEVEK 714 (1092)
Q Consensus 696 ~d~~~l~s~~~d~~i~lw~ 714 (1092)
.+..++++|+-|.++++|.
T Consensus 386 ~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCceEEeccccceeeeee
Confidence 3455899999999999996
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=312.20 Aligned_cols=294 Identities=21% Similarity=0.350 Sum_probs=256.5
Q ss_pred eeecccC-CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC--eeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 327 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 327 ~~~l~~h-~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.+.+.+| ...|.|+.|||||+ .+++++.|+.+++|+..+++ .... +.+|...|..++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA 210 (456)
T ss_pred eeeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence 5666665 78999999999999 59999999999999997776 3332 578999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEc-cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~-~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
|+|||+++++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence 9999999999999999999999 4444444 7889999999999999997 89999999999999999999999999
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCC--ceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~--~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
+|.+.|++++| .+++.+|++++.||.|++||+.++. ....+..+.. +++++.|+|++.++++++. ++.+.
T Consensus 286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~ 359 (456)
T KOG0266|consen 286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK 359 (456)
T ss_pred ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence 99999999999 4577899999999999999999988 3455554444 5999999999999999986 66799
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001363 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
+||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..+. ...+..++++|..++++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA 438 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence 99999999999999998321245556667889999999999999999999999999988775 45688999999999999
Q ss_pred EEe--CCCeEEEEECC
Q 001363 639 VIA--NENRIKILETP 652 (1092)
Q Consensus 639 ~~~--~dg~i~iw~~~ 652 (1092)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 68999999754
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.8e-34 Score=283.92 Aligned_cols=286 Identities=21% Similarity=0.306 Sum_probs=249.3
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
..-+..|..|.|.|+|++ |++|+..|.+.+|+..+- .| ..++..|..+|+++.||++|.+
T Consensus 93 NKvkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nF-------------EtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NF-------------ETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred cccccceeeEEEcCCCce-eEeecccccEEEecCcee------eH-------------HHHhhhhcccceeEEEccCCCE
Confidence 334568999999999996 789999999999997331 11 1237789999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcc-cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1092)
+++|+.+|.|++|+..-.... .+.+ |...|++++|||+.. .+++|+.||+|+|||....+.-..+.||.-.|.
T Consensus 153 miSgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred EEEcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 999999999999998764322 2334 558999999999888 799999999999999999988888999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001363 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
++.|+|.. .+|++++.|..|++||.+++.++.++..|...|..+.|++++++|++++. |..++++|+++.+.+.
T Consensus 227 svdWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~ 300 (464)
T KOG0284|consen 227 SVDWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELF 300 (464)
T ss_pred eeccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHH
Confidence 99998865 59999999999999999999999999999999999999999999999986 6679999999999999
Q ss_pred EEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001363 570 TYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
.+++|. ..|.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|=|..|++|+.|.++++
T Consensus 301 ~~r~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 301 TYRGHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred Hhhcch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceee
Confidence 999998 899999999975 4556689999999999986666655543 34467999999999999999999999999
Q ss_pred EECC
Q 001363 649 LETP 652 (1092)
Q Consensus 649 w~~~ 652 (1092)
|...
T Consensus 377 w~r~ 380 (464)
T KOG0284|consen 377 WTRN 380 (464)
T ss_pred eccC
Confidence 9755
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=269.17 Aligned_cols=294 Identities=14% Similarity=0.233 Sum_probs=258.4
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
++.+|.+.|.|+++-|..+++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 477899999999999999999999999999999999996554 7889999999999999888 89999999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++...+..+.+|..+|.++.+.|-...+++|+.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999998765 58999999999999999999999999999999999999998889999976
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
+.+|++||+..|+...++..|. ..|.+++.+|....+++++.|. |+-|++..|..+..+..+. ..+++++.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~--~iintl~~ 368 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHN--AIINTLSV 368 (460)
T ss_pred ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccccc--ceeeeeee
Confidence 7779999999999999998888 8999999999998889888765 8999999999999877664 45888888
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc
Q 001363 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1092)
+.|+ ++++|+++|.+.+||.+++..++.......+ |+
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-------------------------------------GS----- 405 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-------------------------------------GS----- 405 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCcccccccccccC-------------------------------------Cc-----
Confidence 8776 7889999999999999988665544211000 00
Q ss_pred ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeec
Q 001363 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 764 (1092)
Q Consensus 711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~ 764 (1092)
......|.+.+|...|.+|+++..|.+|++|.-+
T Consensus 406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred --------------------cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 0134568888999999999999999999999743
No 49
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-33 Score=277.11 Aligned_cols=292 Identities=16% Similarity=0.200 Sum_probs=251.5
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
++..|.+.|..+.||++|+|||+++.|.+..||++.....++...++.+|..+|..+.||||.+ +|++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 3778999999999999999999999999999999987766777778999999999999999999 79999999999999
Q ss_pred ECCCCceeEEEe-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCceEEEEEccCCCEEEEEe
Q 001363 471 DAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 471 d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
|+.+|.+.+.+. +|...+.+++|.| ||..+++|+.|+++..||++.... ..+.+ ....|.+++.++||+++++..
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEe
Confidence 999999988774 3568899999955 778999999999999999876542 22222 234689999999999999987
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
. +..|++++..+.........+ .+|++.+.+.+++++++--.+..+++||++....+....++.....+..-
T Consensus 374 ~----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 374 V----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred c----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe
Confidence 6 556999998877665544443 58999999999999999999999999999988888888777655556666
Q ss_pred EEcc-CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 629 CFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 629 ~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
||.- +..++++|++|+.|+||+..+++++..+.||...|.+++++| .+..++|+++.|
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP---------------------~~p~m~ASasDD 504 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP---------------------ADPEMFASASDD 504 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC---------------------CCHHHhhccCCC
Confidence 7765 568999999999999999999999999999999999999996 466779999999
Q ss_pred cccceeccc
Q 001363 708 NKSEVEKPL 716 (1092)
Q Consensus 708 ~~i~lw~~~ 716 (1092)
|+||+|-..
T Consensus 505 gtIRIWg~~ 513 (519)
T KOG0293|consen 505 GTIRIWGPS 513 (519)
T ss_pred CeEEEecCC
Confidence 999999864
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=287.90 Aligned_cols=295 Identities=16% Similarity=0.257 Sum_probs=253.1
Q ss_pred CCcceeeecccCCCCceEEeecC-CCceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001363 322 FPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~sp-dg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
+|+..+.++.||+..|+++.|.| .+. ||++|+.|+.|+||++-. +.++++ +.+|..+|
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~V 261 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPV 261 (503)
T ss_pred ccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhhh
Confidence 68899999999999999999999 665 999999999999999977 777765 77899999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
..++|+++|..+++++.|+.|++||+++|+++.. +. ....++|+.|.||+.. .+++|+.|+.|+.||+++++.++
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence 9999999999999999999999999999987763 22 2346889999999955 78899999999999999999999
Q ss_pred EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
++..|-+.|..+.|.+ ++.++++.+.|+.+++|+.+..-.... .........++..+|++.++++-+. ++.|.
T Consensus 337 eYd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ 410 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIA 410 (503)
T ss_pred HHHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEE
Confidence 9999999999999954 778999999999999999987766543 3334456778999999999988765 66788
Q ss_pred EEeCCC---CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CC
Q 001363 559 EWNESE---GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NG 634 (1092)
Q Consensus 559 iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~ 634 (1092)
++.... ....+.+.||... +--..+.|+|||.+|++|+.||.+.+||.++-+++..+..|. ..+..+.|+| ..
T Consensus 411 ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 411 IFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEP 487 (503)
T ss_pred EEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCc
Confidence 887543 2344567787632 445678999999999999999999999999999999998774 4588999999 46
Q ss_pred CEEEEEeCCCeEEEEE
Q 001363 635 TLLAVIANENRIKILE 650 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~ 650 (1092)
..+|+++.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 6899999999999996
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.6e-31 Score=250.31 Aligned_cols=293 Identities=16% Similarity=0.241 Sum_probs=238.2
Q ss_pred ccccccEEEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001363 731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 809 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~ 809 (1092)
.+|.+++..++|+|- |..|++++.|..|++|+..... -|. .......+|...|++++
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~--------ck~vld~~hkrsVRsvA 68 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWT--------CKTVLDDGHKRSVRSVA 68 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEE--------EEEeccccchheeeeee
Confidence 348889999999999 8999999999999999865310 011 11111225999999999
Q ss_pred EecCCCEEEEEe-CCeEEEEEcC--CceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc---eeeEeec
Q 001363 810 LSKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLE 883 (1092)
Q Consensus 810 ~s~dg~~l~~~s-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~ 883 (1092)
|+|.|++||+++ |.++.||.-. +.+++.++.+|.++|.|++|++ +|++||+++.|+.|-||.+..+ ++...|+
T Consensus 69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 999999999999 8999999876 4578999999999999999999 9999999999999999999854 5789999
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEE
Q 001363 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIY 962 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lw 962 (1092)
+|+..|..+.|+|...+|+|+|.|.+|++|+-..+ ....+.+.+.++.. .|.+++|.+.|..|++ +.|++++||
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEee
Confidence 99999999999999999999999999999988731 12567888888876 7999999999998888 578999999
Q ss_pred EcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCC
Q 001363 963 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus 963 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1042 (1092)
...+ .+..-|++.+..+.|. + ..|++++.|+.|+++.-..+-.-..+... ....+.|...|+ ++.+.|..
T Consensus 223 ~~~~-----~~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVN--sV~w~p~~ 292 (312)
T KOG0645|consen 223 RLYT-----DLSGMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVN--SVQWNPKV 292 (312)
T ss_pred eecc-----CcchhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHH-Hhhhcccccccc--eEEEcCCC
Confidence 9652 2334578899999998 4 47999999999999987754222223211 222233566666 67899965
Q ss_pred CCEEEEEeCCCcEEEEecC
Q 001363 1043 PTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1043 ~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.++|++|++||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7899999999999999874
No 52
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-28 Score=262.07 Aligned_cols=504 Identities=15% Similarity=0.185 Sum_probs=351.6
Q ss_pred cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecC-CcCeEEEeecccCCccEEEEEecCCeEEEEEcC
Q 001363 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517 (1092)
Q Consensus 440 h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~ 517 (1092)
...+|.++||+.+++ .|+.+-.||.|.+|++..+=.. ..+.++ ...|.+++|. ++..|++.+.+|.|..||+.
T Consensus 24 ~Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEecc
Confidence 456799999999999 6999999999999999876433 455554 4579999996 45689999999999999999
Q ss_pred CCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe
Q 001363 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1092)
Q Consensus 518 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 597 (1092)
+.+....+...++.|.+++.+|.+..++.++. ++.++.++...+.......-.. +.+.+.++.|+|++..+++|+
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~r-q~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMR-QKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeeccc-ccceEEEEEecCCccEEEecc
Confidence 99999999999999999999999999999875 5578888887776654332222 237899999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEeC-----CC-CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeee
Q 001363 598 DDHVIKIWDMNKVQLLTTIDA-----GG-GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1092)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 671 (1092)
.||.|++||..++..+..... .. ...-|.++.|-.+ ..+++|...|+|.+||...+..++.+..
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~--------- 243 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSC--------- 243 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhh---------
Confidence 999999999999988773321 11 1122455555543 4678888888888888887766665543
Q ss_pred ecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEE
Q 001363 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 751 (1092)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 751 (1092)
|...|.+++..+++.++++
T Consensus 244 -------------------------------------------------------------h~adVl~Lav~~~~d~vfs 262 (691)
T KOG2048|consen 244 -------------------------------------------------------------HDADVLALAVADNEDRVFS 262 (691)
T ss_pred -------------------------------------------------------------hhcceeEEEEcCCCCeEEE
Confidence 5556667777777777777
Q ss_pred eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEc
Q 001363 752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV 830 (1092)
Q Consensus 752 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~ 830 (1092)
++.|+.+..|....... -|-.. .....|...|.+++..++ .+++|+ |..+.+-..
T Consensus 263 aGvd~~ii~~~~~~~~~-------------~wv~~---------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 263 AGVDPKIIQYSLTTNKS-------------EWVIN---------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred ccCCCceEEEEecCCcc-------------ceeee---------ccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 77777777666543311 02111 111248889999999888 555555 666666554
Q ss_pred CCceeeEEecCCCCCeEE-EEEcCCCCCEEEEEeCCCcEEEEEcCCce---------eeEeeccccCCeEEEEEcCCCCE
Q 001363 831 MTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNI 900 (1092)
Q Consensus 831 ~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg~v~iwd~~~~~---------~~~~l~~h~~~V~~l~~spdg~~ 900 (1092)
...+...........-.+ +...| .++|..--.+..+.+|.+.+.. +.+-...-...|.+.+.||||++
T Consensus 319 ~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~ 396 (691)
T KOG2048|consen 319 REFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNL 396 (691)
T ss_pred cccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCE
Confidence 432211111100111112 22333 4566666667788899887651 11222223456999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-E-eCCcEEEEEcCCcee--eeeec-c
Q 001363 901 LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTC--LKQWF-P 975 (1092)
Q Consensus 901 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~i~lwd~~~~~~--~~~~~-~ 975 (1092)
++.+.- ..++||.++.........+....... .....+.|+-|+..++. + ....+.+++..+... +.... .
T Consensus 397 Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~ 472 (691)
T KOG2048|consen 397 IAISTV-SRTKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ 472 (691)
T ss_pred EEEeec-cceEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc
Confidence 997654 45889988764322222222211111 25778999999988777 4 556788887765432 22211 1
Q ss_pred CCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcE
Q 001363 976 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1055 (1092)
Q Consensus 976 ~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v 1055 (1092)
+--..|..+..|+||.||++.+.+|.|.+|++.+++...... .+ .....+++++|.+...++.+..+++|
T Consensus 473 ~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~---rl-------n~~vTa~~~~~~~~~~lvvats~nQv 542 (691)
T KOG2048|consen 473 AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV---RL-------NIDVTAAAFSPFVRNRLVVATSNNQV 542 (691)
T ss_pred cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh---cc-------CcceeeeeccccccCcEEEEecCCeE
Confidence 245789999999999999999999999999999997764332 01 12345778887777899999999999
Q ss_pred EEEecCCCC
Q 001363 1056 YVIEPNEPG 1064 (1092)
Q Consensus 1056 ~~w~~~~~~ 1064 (1092)
.-+|+...+
T Consensus 543 ~efdi~~~~ 551 (691)
T KOG2048|consen 543 FEFDIEARN 551 (691)
T ss_pred EEEecchhh
Confidence 999995443
No 53
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-32 Score=297.11 Aligned_cols=264 Identities=14% Similarity=0.197 Sum_probs=230.2
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcC---------cCcccccccCCccccCCCCCceeeecCCCCCCCC
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT---------LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 803 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~ 803 (1092)
....+.|..|++|+..++.+-.|..|++|.+...+.. ......+.....+.|...+..... +. +|.+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L~--GH~G 452 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--LY--GHSG 452 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--ee--cCCC
Confidence 4556899999999999999999999999999854321 111112222344555554442332 32 5999
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee
Q 001363 804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
+|....|+|+.++|++++ |+++|+|.+.+..++..+++|..+|..+.|+| -|.++|||+.|++.++|......+++.+
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhh
Confidence 999999999999999999 69999999999999999999999999999999 8999999999999999999999999999
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEE
Q 001363 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI 961 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~l 961 (1092)
.||.+.|.|+.|+|+..++|+||.|.+|++||+.+|. .++.+.||.. +|.+++|||+|++|++ +.|+.|.+
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF~GH~~---~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIFTGHKG---PVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEecCCCC---ceEEEEEcCCCceEeecccCCcEEE
Confidence 9999999999999999999999999999999999976 5667788776 8999999999999999 58899999
Q ss_pred EEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001363 962 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 962 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
||+.++..+.. +.+|.+.|.++.||.||..||+||.|++|++||+..-
T Consensus 604 WDl~~~~~v~~-l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQ-LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhh-hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999987 5689999999999999999999999999999998754
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.6e-30 Score=283.46 Aligned_cols=287 Identities=25% Similarity=0.412 Sum_probs=254.8
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+++.+|.+.|++++|+|+++ ++++|+.||.|.+|++.+++.... +..|...+..+.|+|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD 62 (289)
T ss_pred hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence 56789999999999999998 688899999999999998875543 5678899999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
+++|++++.++.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 9999999999999999999875444 5678988999999999987 7888888999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
+.++++++. +.++++++.||.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+++||..+++.
T Consensus 138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~ 211 (289)
T cd00200 138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence 999999764 578888888999999999988888888888889999999999999998875 56699999999998
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
+..+..+. ..+.++.|+|++.++++++.+|.+++|++.+++....+..+ ...+.+++|+|+++++++++.||.++
T Consensus 212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEE
Confidence 88887766 79999999999888888888999999999998888888744 34689999999999999999999999
Q ss_pred EEE
Q 001363 648 ILE 650 (1092)
Q Consensus 648 iw~ 650 (1092)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 995
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.7e-33 Score=270.21 Aligned_cols=276 Identities=21% Similarity=0.305 Sum_probs=234.6
Q ss_pred CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001363 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
..+.|.|+.+..+ .+++|..|++|+|||.++-.+++. +.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeecc--ceEEE
Confidence 4568999999643 479999999999999999888765 88999999999995 66999
Q ss_pred EEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce---eEEEecCCcCeE
Q 001363 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVY 489 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~ 489 (1092)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. ++++++.|.+|.|||+..... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999888 67789999999999853 799999999999999987653 356789999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001363 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
.+.| +.+++++++.|.+|++|+..+.+.+.++.+|...|.|+.+ .|+++++|+. +.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9988 4579999999999999999999999999999999977764 5788888876 7789999999999999
Q ss_pred EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-------eCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.++||+ .-|.++.|. .+.+++|+.||+|++||+..+...... ..-.+...|..+.| |...+++++.
T Consensus 395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssH 467 (499)
T KOG0281|consen 395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSH 467 (499)
T ss_pred HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccC
Confidence 999999 899999995 578999999999999999876433111 11122334666666 4677899999
Q ss_pred CCeEEEEECCCCce
Q 001363 643 ENRIKILETPESNS 656 (1092)
Q Consensus 643 dg~i~iw~~~~~~~ 656 (1092)
|.+|.|||..++..
T Consensus 468 ddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 468 DDTILIWDFLNGPP 481 (499)
T ss_pred CCeEEEEEcCCCCc
Confidence 99999999987744
No 56
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.3e-32 Score=271.47 Aligned_cols=280 Identities=16% Similarity=0.218 Sum_probs=242.3
Q ss_pred CCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccce
Q 001363 623 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1092)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 702 (1092)
..|..+.|.|+|+.|++|+..|.+.+|+...- .
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f----------------------------------n------------- 129 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF----------------------------------N------------- 129 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCcee----------------------------------e-------------
Confidence 45889999999999999999999999986311 0
Q ss_pred eeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCcc
Q 001363 703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 782 (1092)
Q Consensus 703 s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 782 (1092)
+.+-...|.+.|.++.|+++|.+++++..+|.|++|+...+. ++.
T Consensus 130 -----------------------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn------------Vk~ 174 (464)
T KOG0284|consen 130 -----------------------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN------------VKI 174 (464)
T ss_pred -----------------------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh------------hHH
Confidence 000112388999999999999999999999999999865431 111
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE
Q 001363 783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 861 (1092)
Q Consensus 783 ~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las 861 (1092)
. ...|...|++++|||+...+++++ ||+|+|||....+..+.+.+|.-.|.+++|+| ...+||+
T Consensus 175 ~--------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLias 239 (464)
T KOG0284|consen 175 I--------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIAS 239 (464)
T ss_pred h--------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEE
Confidence 1 012568999999999999999998 69999999999999899999999999999999 7889999
Q ss_pred EeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceE
Q 001363 862 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 941 (1092)
Q Consensus 862 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 941 (1092)
|+.|..|++||.++|.++.++.+|...|..+.|+|++++|+|+|.|..++++|+.+ .+-+....+|.. .+.+
T Consensus 240 gskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-----mkEl~~~r~Hkk---dv~~ 311 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-----MKELFTYRGHKK---DVTS 311 (464)
T ss_pred ccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-----hHHHHHhhcchh---hhee
Confidence 99999999999999999999999999999999999999999999999999999995 235666777766 7999
Q ss_pred EEEccCCCEEEE--EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 942 IQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 942 l~~s~dg~~la~--~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
++|+|-..-|.+ |.||.|..|.+..-+.+..+..+|...|++++|.|=|..|++|+.|.++++|.-
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 999998766555 699999999998778888888899999999999999999999999999999964
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=3e-30 Score=292.89 Aligned_cols=291 Identities=21% Similarity=0.304 Sum_probs=254.5
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC-
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA- 472 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~- 472 (1092)
.|...|.++.|+|||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++ ++++++.|++|+|||+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence 3588999999999999999999999999999977662 12225679999999999999999 8999999999999999
Q ss_pred CCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001363 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
..+..++++.+|...|++++|++ +++++++|+.|++|++||+++++....+..|...|.+++|+++|+++++++.
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--- 308 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--- 308 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence 56689999999999999999976 4589999999999999999999999999999999999999999999999965
Q ss_pred CceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCC-CCCceEE
Q 001363 553 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC 629 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~ 629 (1092)
++.|++||..++. +...+.++.... ++..+.|+|++.++++++.|+.+++||+..+........+... ..+.+..
T Consensus 309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 7789999999999 567888877333 7999999999999999999999999999999999888877553 1334455
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCceeeecccc-cCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec--c
Q 001363 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A 706 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~ 706 (1092)
.++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++ +...++++++ .
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~----------------------~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH----------------------PTENLIASSSFEG 444 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC----------------------CCcCeeeecCcCC
Confidence 5789999999999999999999999999999999 7777777776 5566677776 6
Q ss_pred ccccceeccc
Q 001363 707 ENKSEVEKPL 716 (1092)
Q Consensus 707 d~~i~lw~~~ 716 (1092)
|+.+++|..+
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 8889999754
No 58
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.98 E-value=9.5e-30 Score=266.20 Aligned_cols=697 Identities=15% Similarity=0.142 Sum_probs=371.5
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..+-.|.+|.+.|+.+.|||-...|||+||.|..|+||.+..|-...- .-....+.+..-.|-++.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence 345678899999999999997777999999999999999985432210 0011224555668889999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC-CceeEEEec
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~~~~~ 483 (1092)
+|...-|...+..|+++|||+.+++.+. ++.+|...|.++.|+.||+ +|++++.|+.|+|||.+. ++.++..++
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9977666666788899999999986554 7889999999999999999 899999999999999874 678888888
Q ss_pred CCcCe-EEEeecccCCccEEEEEecC----CeEEEEEcCCCCc-eEEecCC-CCceEEEEEccCCCEEEEEecCCCCcee
Q 001363 484 HGAPV-YSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA-RVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1092)
Q Consensus 484 ~~~~v-~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~-~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1092)
|.+.- ..+.| .++-..|++.+.+ ..|++||.+.... ..++... ...|.---|.||.++|+.++ .|+..
T Consensus 212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~ 286 (1012)
T KOG1445|consen 212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNK 286 (1012)
T ss_pred cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcce
Confidence 87642 12334 3454566666654 4589999876543 2233222 23566667899999998876 45778
Q ss_pred EEEEeCCCCeEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE-EEc--
Q 001363 557 LVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFN-- 631 (1092)
Q Consensus 557 i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s-- 631 (1092)
++.+.+...+..- .+...- .......++-|....-+..++ ..+++.+.+...+...- + .+. ... .|+
T Consensus 287 l~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y-~--VPR-ksyrdFH~D 358 (1012)
T KOG1445|consen 287 LFMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPY-I--VPR-KSYRDFHSD 358 (1012)
T ss_pred EEEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeeccc-c--cch-hhhhhhhhh
Confidence 8888876554321 111100 011233334443222222221 12233333222221110 0 000 000 111
Q ss_pred --cCCCEEEEEeCCCeEEEEECCCCceeeec------ccccC----ceeee------eecCCCcc-ccccccCCceeecC
Q 001363 632 --KNGTLLAVIANENRIKILETPESNSVDAA------GVLSD----NLRKL------SVNPISTV-TGAGIANGSVSVNE 692 (1092)
Q Consensus 632 --~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~----~v~~~------~~~~~~~~-~~~~~~~~~~~~~~ 692 (1092)
|+..-...+..-| -|-..+++.++.+ +.|.. .+... +|.+.... ++.++....... +
T Consensus 359 LfPeT~G~~p~~~ag---eWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~-~ 434 (1012)
T KOG1445|consen 359 LFPETRGAEPGCTAG---EWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSS-S 434 (1012)
T ss_pred hCccccCCccCcCcc---ceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCcccccccc-c
Confidence 1110000000000 0111111111110 00100 00000 00000000 000000000000 0
Q ss_pred CCCCCCc-cceeeccccccceeccccccCcccccc----ccCCccccccEEEEE------EecCCcEEEEeecCCeeEEE
Q 001363 693 DPKEDVK-PEISVEAENKSEVEKPLFARPSECQSL----LLPSKVKANKISRLT------YNNGGQAIFALASNGVHLMW 761 (1092)
Q Consensus 693 ~~s~d~~-~l~s~~~d~~i~lw~~~~~~~~~~~~~----~~~~~~~~~~i~~l~------~s~~g~~l~~~~~dg~i~~w 761 (1092)
+.-||-. .-+.. ....+|-.+....+....... .-...+..+++..+. .-|...-+ ..+-....+.
T Consensus 435 ~~~Pd~~~qpaV~-~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~pl--t~~~s~~s~~ 511 (1012)
T KOG1445|consen 435 NNVPDVQEQPAVP-KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPL--TDSVSTPSVV 511 (1012)
T ss_pred cCCCccccCCCcC-cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCccc--cccccccccc
Confidence 0001100 00000 001111111000000000000 000000000000000 00000000 0000000000
Q ss_pred ------eecCCCcCcCccc---c----cc----------cCCccccCCCCCcee----eecCCCCCCCCCeeEEEEecCC
Q 001363 762 ------RWPRNDLTLSTEA---T----TK----------VPPRLYQPRHGPQFM----VNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 762 ------~~~~~~~~~~~~~---~----~~----------~~~~~~~~~~g~~~~----~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
..+......-|.. + .. ..+.-|.-..|.... ...+......-+-.|--|..+.
T Consensus 512 ~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~ 591 (1012)
T KOG1445|consen 512 GPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANN 591 (1012)
T ss_pred CccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeecc
Confidence 0000000000000 0 00 000001111111000 0000000011111222345566
Q ss_pred CEEEEE---eCCeEEEEEcCCc-eeeEE-ecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc-------eeeE
Q 001363 815 AYLFSA---SGGVISLYIVMTF-KTILT-IMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVIS 880 (1092)
Q Consensus 815 ~~l~~~---sdg~i~iwd~~~~-~~~~~-~~~--~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-------~~~~ 880 (1092)
+.+|+- +.|.|.||++... ++... +.+ ....|+.+.|.|.|...||++++||.|++|.+..+ .+-.
T Consensus 592 ~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~ 671 (1012)
T KOG1445|consen 592 KRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEK 671 (1012)
T ss_pred ceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcce
Confidence 677654 4689999999743 32211 111 34578999999999999999999999999999764 3457
Q ss_pred eeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCc
Q 001363 881 KLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH 958 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~ 958 (1092)
.+.+|...|+++.|+|= ...|++++.|-+|++||+.+.. ....+.+|.. .|..++|||||+.+|+ +.||+
T Consensus 672 ~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 672 ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEECCCCcceeeeecCce
Confidence 78899999999999994 5789999999999999999854 3344556665 8999999999999999 89999
Q ss_pred EEEEEcCCceeeeeeccC-CCCCEEEEEEecCCCEEEEEECCC----cEEEEEcCCCceEEeeccccccCCCCccccccc
Q 001363 959 LAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDG----TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1033 (1092)
Q Consensus 959 i~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1033 (1092)
|++|+..+++....-..+ -..+-..+.|.-||+++++.+.|. .|.+||..+.....-........+. +
T Consensus 744 ~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-------~ 816 (1012)
T KOG1445|consen 744 LRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-------P 816 (1012)
T ss_pred EEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc-------c
Confidence 999999877643221222 144556788999999999888774 4888988765532111100101110 0
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEecCCCCCccccCCCCC
Q 001363 1034 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus 1034 ~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
+-=.++++.+.+|++|-.|..|.+|++..+.|..-.+.|+.
T Consensus 817 LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~ 857 (1012)
T KOG1445|consen 817 LVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFM 857 (1012)
T ss_pred ccccccCCCceEEEecCCCceEEEEEecCCCceeeeccccc
Confidence 11125565677899999999999999999998766655554
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.7e-31 Score=272.80 Aligned_cols=290 Identities=15% Similarity=0.192 Sum_probs=253.9
Q ss_pred eecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccC-CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001363 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .++|++.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 3789999999999999 899999999999999999987 65565 7889999999999999999 799999999999
Q ss_pred EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
+||+++|+++..|. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999986 55678899998875 57999999999999999999999999999999999999999999999998
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEEeCCCCCCCC
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---LLTTIDAGGGLPEN 625 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~v 625 (1092)
. +..+++|+...+-.+....... .....++..+|+++++++-+.|+.|.++.+...- ....+.+|.....-
T Consensus 362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 6 5579999999887776655544 3567889999999999999999999999865432 22344444433445
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001363 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
..+.|||||.+|++|..||.+.+||..+.+.+..++.|...+..+.|.|. ....+++++
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~---------------------e~Skvat~~ 494 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV---------------------EPSKVATCG 494 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC---------------------CcceeEecc
Confidence 67999999999999999999999999999999999999999999999964 345689999
Q ss_pred cccccceec
Q 001363 706 AENKSEVEK 714 (1092)
Q Consensus 706 ~d~~i~lw~ 714 (1092)
.+|.|++|+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999996
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-30 Score=238.64 Aligned_cols=270 Identities=20% Similarity=0.308 Sum_probs=239.8
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++ +..+|...|..++.+.|+. .+++|+.|+.+.+|
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQVW 86 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEEE
Confidence 477899999999999999999999999999999999998777 7889999999999999998 69999999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
|+++|+.++.|.+|.+.|+.+.|+ .+...+++|+.|..+++||-++.. +++.+......|.++..+ +..+++++
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred EcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence 999999999999999999999995 456799999999999999988654 456666667778777764 56677777
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
. +++++.||++.|+...-+-+ .+|+++.|+++++..++++.|+++++.|-.+|+++....+|.....-..+
T Consensus 163 ~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 163 V----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred c----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 6 77799999999998777766 56999999999999999999999999999999999999988776656678
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCc-eeeeeecCCCcc
Q 001363 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTV 678 (1092)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~ 678 (1092)
+++....++++|++||.+++||+.+...+..++.+... +..+++.|....
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence 88888999999999999999999999999998888877 788888865443
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.5e-31 Score=245.35 Aligned_cols=291 Identities=16% Similarity=0.220 Sum_probs=255.3
Q ss_pred eecccCCCCceEEeec---CCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 328 QTLIEGSSSPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~s---pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+-.||+.+|..++|| |+| ++|++++.|+.-.+-+-++|.-+.+ +.||.+.|.+..+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence 4558999999999998 577 6899999999999999999988876 7799999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEec
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~ 483 (1092)
..+..+-|+++.|-+-+|||.-+|..+. .+ .|...|.+++|+.|.+ +|++|+.++.++|+|++..+ +...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 9999999999999999999999998776 33 5889999999999999 79999999999999998764 4678899
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
|.+.|..+.|... .+.+++.+.|++||+||.+++.....+... .+|+++.+++||++|..+. .+.|..||..
T Consensus 142 htg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEeccc
Confidence 9999999998653 367888899999999999999988877654 4889999999999988775 3349999999
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001363 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
+-..++.+.... .|.+..++|+...+++|++|..++.||..+|..+.... .++..+|.|+.|+|+|...++|+.|
T Consensus 214 sf~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 214 SFGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred cccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCceeeccCCC
Confidence 999988887644 78999999999999999999999999999999988852 2345679999999999999999999
Q ss_pred CeEEEEECCCCcee
Q 001363 644 NRIKILETPESNSV 657 (1092)
Q Consensus 644 g~i~iw~~~~~~~~ 657 (1092)
|+|++|....++..
T Consensus 289 GTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 289 GTIRLWQTTPGKTY 302 (334)
T ss_pred ceEEEEEecCCCch
Confidence 99999998866443
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.9e-31 Score=259.55 Aligned_cols=277 Identities=16% Similarity=0.247 Sum_probs=234.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
....|.|+.+ |...+++|..|.+|+|||.++-.+++ .+.||++.|.|+.|. .+ .+++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3457889888 57789999999999999999987766 688999999999985 45 899999999999999999
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
|+++.++-+|...|..+.|+ ..++++++.|.++.+||+...... ..+.+|...|..+.|+ .+++++++.
T Consensus 267 ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC--
Confidence 99999999999999999983 359999999999999999877643 3567888888888875 458988875
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
+.+|++|+..+++.++++.+|. ..|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD 409 (499)
T ss_pred --CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence 7789999999999999999998 78887776 578999999999999999999999999987754 58899996
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCce---------eeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccce
Q 001363 632 KNGTLLAVIANENRIKILETPESNS---------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 702 (1092)
.+.+++|..||+|++||+..+.. +..+..|.+.|..+.|. ...++
T Consensus 410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD------------------------~fqIv 463 (499)
T KOG0281|consen 410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD------------------------EFQII 463 (499)
T ss_pred --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec------------------------ceEEE
Confidence 67899999999999999987632 33444566677666664 66789
Q ss_pred eeccccccceeccccccCccc
Q 001363 703 SVEAENKSEVEKPLFARPSEC 723 (1092)
Q Consensus 703 s~~~d~~i~lw~~~~~~~~~~ 723 (1092)
+++.|.+|.+||+..+.+...
T Consensus 464 sssHddtILiWdFl~~~~~~~ 484 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGPPSAA 484 (499)
T ss_pred eccCCCeEEEEEcCCCCcccc
Confidence 999999999999876555433
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=8.1e-29 Score=304.22 Aligned_cols=294 Identities=14% Similarity=0.172 Sum_probs=238.4
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CC
Q 001363 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg 408 (1092)
+..|.+.|++++|+|+|+ ++|+|+.|++|+|||..+...... . .......+. +...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCC
Confidence 456999999999999998 699999999999999864211000 0 000000122 356899999988 58
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
.+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999876544 6789999999999997 677 8999999999999999999999888754 57
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 565 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~- 565 (1092)
|.++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. ++.|++||+..+
T Consensus 620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~ 693 (793)
T PLN00181 620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI 693 (793)
T ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence 88888853 467899999999999999998765 455677888899999997 7888988876 667999998743
Q ss_pred -----eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC-----------CCCCCCCceEE
Q 001363 566 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC 629 (1092)
Q Consensus 566 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~ 629 (1092)
..+..+.+|. ..+..++|+|++.++++|+.|+.|++|+......+..... ..+...|.+++
T Consensus 694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 5677888877 8899999999999999999999999999876654433221 12234589999
Q ss_pred EccCCCEEEEEeCCCeEEEEEC
Q 001363 630 FNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
|+|++..|++++.||.|+||++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999986
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.8e-28 Score=265.68 Aligned_cols=285 Identities=23% Similarity=0.342 Sum_probs=253.4
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|..+|.+++|+|++++|++++.++.|++|++.+++... .+..|...+..+.|+|+++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876433 5678999999999999998 799999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.+++.+..+..|...+.++.|.+. +.++++++.+|.+++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9999899999999999999999664 578888888999999999988888788888889999999999988888763
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++.|++||..+++.+..+..+. ..+.++.|+|+++.+++++.++.+++||+.+++.+..+..+. ..+.+++|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~ 228 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFS 228 (289)
T ss_pred --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEc
Confidence 5569999999999888888766 789999999999999999999999999999988888775443 368999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001363 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1092)
|++.++++++.+|.+++|+..++.....+..+...+.++.++ ++++.+++++.|+.++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR 286 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence 998888888889999999999988888888888889888886 6788899999999999
Q ss_pred eec
Q 001363 712 VEK 714 (1092)
Q Consensus 712 lw~ 714 (1092)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.8e-30 Score=248.06 Aligned_cols=290 Identities=17% Similarity=0.219 Sum_probs=239.8
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
..+.+.+..|||||+++++++-||.|.+|++..++...+-+..+.. . ++ -+..+|.|+.||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd---------~--fM-------Mmd~aVlci~FSR 273 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD---------N--FM-------MMDDAVLCISFSR 273 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc---------c--ee-------ecccceEEEeecc
Confidence 4567889999999999999999999999998876553333322211 1 11 1678999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeE
Q 001363 813 NDAYLFSAS-GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 890 (1092)
|...+|+|+ ||.|++|.+.+|.+++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+.+|++++.++||++-|+
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999998 8999999999999999997 7999999999999 889999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC--EEEEEeCCcEEEEEcCCce
Q 001363 891 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT--RFLLVHETHLAIYEAEELT 968 (1092)
Q Consensus 891 ~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~--~la~~~d~~i~lwd~~~~~ 968 (1092)
...|++||.++++++.||+|++|+.++.++ +.++.... ...+|.++-.-|.+. ++++...++++|.++. |+
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC-----~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQ 425 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTEC-----LSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQ 425 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhh-----hhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ce
Confidence 999999999999999999999999999663 33332211 113578888877653 4444567889999985 77
Q ss_pred eeeeeccCC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEE
Q 001363 969 CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1046 (1092)
Q Consensus 969 ~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1046 (1092)
.++.+..|. .+.-.+.+.||.|.++...+.|+.++-+.+.+|++...+....-. ++.++-|| ..+.+
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd----------vIGl~HHP-HqNll 494 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD----------VIGLTHHP-HQNLL 494 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc----------ccccccCc-ccchh
Confidence 887766554 556667889999999999999999999999999999887733322 33477888 57899
Q ss_pred EEEeCCCcEEEEe
Q 001363 1047 AVGLTNGEVYVIE 1059 (1092)
Q Consensus 1047 ~~~~~dg~v~~w~ 1059 (1092)
|+=+.||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999995
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.5e-30 Score=256.80 Aligned_cols=297 Identities=16% Similarity=0.228 Sum_probs=258.6
Q ss_pred cCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001363 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
+.+|..+...|..|.++|..+.|-++.. .|++|+.|..|++|++..++.-.. ..|.|..++|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 6688899999999999999999999966 489999999999999987763221 1277888999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
+++.|.++++++++++.|+.+++|++...+... ++.||++.|+++.|..... .+++|+.|.+|+.||+..+.|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999976555 7889999999999998776 59999999999999999999988
Q ss_pred EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
++- ....+..|+.. ...+++|-.|++|++||.++.........++ .|+++..+++|..+.+++. +.++.+
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 33445555553 3578999999999999999999888887766 9999999999999999976 667999
Q ss_pred EeCCCCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001363 560 WNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
.|.++.+....+...... ....+.+.|+|++.|+++||.||.|+||++.++++...+......+.|.+++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 999999998887754321 1347889999999999999999999999999999999998777666799999999999999
Q ss_pred EEeCCCeEEEE
Q 001363 639 VIANENRIKIL 649 (1092)
Q Consensus 639 ~~~~dg~i~iw 649 (1092)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999998
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.2e-29 Score=254.25 Aligned_cols=287 Identities=19% Similarity=0.234 Sum_probs=243.4
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
..+.|. .|++++|||...+=+|+.+. -.+.||+..+...+++ +..-...|.++.|-.||
T Consensus 22 ~~ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG 80 (487)
T KOG0310|consen 22 VHKEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDG 80 (487)
T ss_pred cccccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCC
Confidence 334554 99999999966544454433 6799999888776653 23355789999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
++||+|+..|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.+ .+++|++|+.+++||+.+......+.+|++.|
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV 156 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV 156 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence 999999999999999977654455 57899999999999999887 89999999999999999999877999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-E
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-I 567 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~ 567 (1092)
.+.+++|. ++++++||+.||.|++||.+.......--.|+.+|..+.+-|.|..+++++. +.|++||+.+|. .
T Consensus 157 R~g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 157 RCGDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQL 230 (487)
T ss_pred EeeccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCcee
Confidence 99999876 4579999999999999999998766666668899999999999999999874 459999999554 4
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
+..+..|. ..|+|+.+..++..|++|+-|+.|++||+.+.+.+..+...+ +|.+++.+|+++.+++|..||.+.
T Consensus 231 l~~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 231 LTSMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred hhhhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceee
Confidence 44444466 899999999999999999999999999999999999987764 489999999999999999999888
Q ss_pred EEECC
Q 001363 648 ILETP 652 (1092)
Q Consensus 648 iw~~~ 652 (1092)
+-+..
T Consensus 305 ~rr~~ 309 (487)
T KOG0310|consen 305 IRRRE 309 (487)
T ss_pred eehhh
Confidence 76433
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.1e-28 Score=233.96 Aligned_cols=316 Identities=17% Similarity=0.206 Sum_probs=244.3
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeE-EeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~-~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
......|..|+..+.+.+|||||. |+|+|+.|.+|+|.|++.--... ..++..=+.......+ ..+..|.++|+++
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvI--RTlYDH~devn~l 178 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVI--RTLYDHVDEVNDL 178 (430)
T ss_pred ccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceE--eehhhccCcccce
Confidence 344567889999999999999998 89999999999999997210000 0000000111111112 2377899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-
Q 001363 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 481 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~- 481 (1092)
.|+|....|++|+.|++|+++|...-...+....+ ....+|.++.|+|.|. +|+.|....++++||+++-++...-
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecC
Confidence 99999999999999999999999765443333222 3456899999999999 7899999999999999998886543
Q ss_pred --ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CC-CceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 482 --EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PG-LGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 482 --~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
..|.+.|+++.+++ .+.+.++++.||.|++||--+.+++.++.. |+ ..|.+..|..+|+++++.+. +..+
T Consensus 256 Pd~qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~v 329 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTV 329 (430)
T ss_pred cccccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----ccee
Confidence 46899999999854 668999999999999999888888776543 33 47899999999999999875 7789
Q ss_pred EEEeCCCCeEEEEEeeccccCC--ceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 558 VEWNESEGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
++|.+.+++.+..+.|...... --+...|+....+++.-. ..+.++-||.+++..+..+.. ++...+..+.-||.+
T Consensus 330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~ 408 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVE 408 (430)
T ss_pred eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCC
Confidence 9999999999999987631111 123345777777777644 457799999999887766654 345678999999999
Q ss_pred CEEEEEeCCCeEEEEECC
Q 001363 635 TLLAVIANENRIKILETP 652 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~ 652 (1092)
.-+++++.|..+++|-..
T Consensus 409 p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 409 PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred Cceeeecccceeeeeeec
Confidence 999999999999999643
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.7e-27 Score=292.65 Aligned_cols=322 Identities=14% Similarity=0.176 Sum_probs=247.5
Q ss_pred CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC----Ccc
Q 001363 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA 431 (1092)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~ 431 (1092)
+|-+++|+..+....... +..-+..|.+.|.+++|+|+|++||+|+.|+.|+||+..+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 567888887765433211 11114569999999999999999999999999999998642 111
Q ss_pred c-ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCe
Q 001363 432 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 510 (1092)
Q Consensus 432 ~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~ 510 (1092)
. ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|...|++++|++. ++.+|++|+.||+
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 3467999999986433 7999999999999999999999999999999999999753 5579999999999
Q ss_pred EEEEEcCCCCceEEecCCCCceEEEEEc-cCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEEEEcC
Q 001363 511 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 511 i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
|++||+.+......+..+ ..+.++.|+ ++|.++++++. ++.|++||+.++. .+..+.+|. ..|.++.|.
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~- 670 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV- 670 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence 999999988777766644 578899995 57899999876 6679999998765 456677776 889999997
Q ss_pred CCCEEEEEeCCCcEEEEECCCC------ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccc
Q 001363 589 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
++.++++++.|++|++||+..+ ..+..+..|. ..+..++|+|++.+|++|+.|+.+++|+............
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 6789999999999999999743 4566666553 4578899999999999999999999999765432221110
Q ss_pred c-cCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEE
Q 001363 663 L-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 741 (1092)
Q Consensus 663 ~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 741 (1092)
. ...+ .. .....+...|.+++
T Consensus 749 ~~~~~~--------------------------------------------------------~~--~~~~~~~~~V~~v~ 770 (793)
T PLN00181 749 KTIDPV--------------------------------------------------------SG--LEVDDASQFISSVC 770 (793)
T ss_pred ccCCcc--------------------------------------------------------cc--cccCCCCcEEEEEE
Confidence 0 0000 00 00012556799999
Q ss_pred EecCCcEEEEeecCCeeEEEee
Q 001363 742 YNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 742 ~s~~g~~l~~~~~dg~i~~w~~ 763 (1092)
|++++..+++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999985
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.7e-28 Score=276.34 Aligned_cols=307 Identities=19% Similarity=0.250 Sum_probs=250.8
Q ss_pred cCCCCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
.+...|..++.+|||. .+|+|+ .|+.++||+.+.--. +.+.+|.. .+-....+..|.+.|+|+.|||||+
T Consensus 11 H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred cCCeeEEEEEecCCce-eEecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCC
Confidence 3356789999999998 589999 899999999764210 00111111 1111223678999999999999999
Q ss_pred EEEEEeCCCEEEEEEccC---C------------CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 410 LLGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~---~------------~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
|||+|+.|+.|.||.... + +..+....+.+|.+.|..++|+|++. +|++++.|++|.|||..+
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence 999999999999999883 1 11234557889999999999999999 899999999999999999
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC------CceEEEEEccCCCEEEEEe
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~i~~~~~s~dg~~l~~~~ 548 (1092)
.+.+..+.+|...|..+.|. |-|++|++-+.|++|++|+...-.....+..+- .-+..+.|||||.+|++..
T Consensus 161 F~~~~vl~~H~s~VKGvs~D--P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWD--PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEEC--CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 99999999999999999995 467999999999999999977655555544432 2478899999999999988
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-----CC------------EEEEEeCCCcEEEEECCCCc
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~s~dg~i~iwd~~~~~ 611 (1092)
.-+.+..++.|.+..+.+.-..+.||. .++.++.|+|. .+ .+++|+.|++|.||.....+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 877778889999998888889999999 89999999983 11 46779999999999998887
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++.....-.. ..|..++|+|||..|++++.||+|.++.+...
T Consensus 316 Pl~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 7765543222 46899999999999999999999999998754
No 71
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=8.9e-28 Score=226.00 Aligned_cols=279 Identities=16% Similarity=0.240 Sum_probs=242.7
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp- 406 (1092)
+.+++|...|.+|+|+.+|. -||+|+.|+++.+|+++..+.+... ...+|.+.|..++|+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~ 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPK 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCC
Confidence 66789999999999999998 5899999999999999988555432 2678999999999998
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001363 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
...++++++.|.+|++||...+++.... .. .+.=..+.|+|+|+ +++.++.|..|...|.++.+.+...+ ...
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i---~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~ 148 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARI---ET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF 148 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEe---ec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence 6789999999999999999999876633 22 23334578999999 79999999999999999888776654 455
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
.++.++|+. ++.+++.....|+|.|..+...+++..+..|...+.++.|+|+|+++++|+. +..+.+||+..--
T Consensus 149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi 222 (313)
T KOG1407|consen 149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI 222 (313)
T ss_pred eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence 677788873 4457777778899999999999999999999999999999999999999987 6679999999999
Q ss_pred EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001363 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
+++.+..+. -+|..+.|+-+|++|++||+|..|-|=++++|..+..++..+. ...|+|+|...+||.+.+|
T Consensus 223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence 999999888 8999999999999999999999999999999999999987654 6899999999999988775
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.1e-29 Score=232.30 Aligned_cols=287 Identities=14% Similarity=0.180 Sum_probs=254.3
Q ss_pred eecCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 391 LVRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
+..||+.+|..++||| +|-+|++++.|+.=.+-+-++|.-+. ++.||.+.|+....+.+.. ..++++.|-+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence 3779999999999996 89999999999988887878886665 8899999999999998887 78999999999
Q ss_pred EEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEE
Q 001363 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
+|||.-+|..+++|. |...|.+++| +.|..+|++|+.++.+|++|++..+. ...+.+|.+.|..+.|....+.+++
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence 999999999999996 8999999999 45678999999999999999987664 5578899999999999999999998
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
.+. ++.|++||.+++..++++... .+|.++.++++|.++.+ ...+.|.+||..+..+++....+.. |.
T Consensus 161 Sad----d~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~n---V~ 228 (334)
T KOG0278|consen 161 SAD----DKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCN---VE 228 (334)
T ss_pred ecc----CCceEEEEeccCcEEEEEecC----CCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccc---cc
Confidence 754 667999999999999998864 48999999999875544 4567899999999999998877644 78
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCCceeeec-ccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001363 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
+..++|+...+++|++|..++.||..++..+... ++|.++|-|+.|+ |||...++|+
T Consensus 229 SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGS 286 (334)
T KOG0278|consen 229 SASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGS 286 (334)
T ss_pred cccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccC
Confidence 8999999999999999999999999999998885 9999999999996 7899999999
Q ss_pred cccccceecccccc
Q 001363 706 AENKSEVEKPLFAR 719 (1092)
Q Consensus 706 ~d~~i~lw~~~~~~ 719 (1092)
.||+||+|.....+
T Consensus 287 EDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 287 EDGTIRLWQTTPGK 300 (334)
T ss_pred CCceEEEEEecCCC
Confidence 99999999976443
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.3e-27 Score=223.88 Aligned_cols=287 Identities=10% Similarity=0.094 Sum_probs=238.8
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
.|+||..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||++.|.|+....+.
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS 64 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence 4789999999999999999 899999999999999999999987 78999999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-----CCCcEEEEECC-------CCc
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS 476 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~-------~~~ 476 (1092)
+++++|+.|.++++||+++|+++.. + ....+|..+.|+++|. +++.+. ..+.|.++|++ ..+
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 9999999999999999999987763 3 2456899999999999 344332 34679999988 455
Q ss_pred eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001363 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
+...+..+...++.+.|.+. +++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++. +.
T Consensus 139 p~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt 212 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT 212 (327)
T ss_pred ceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence 67888888899999999664 4799999999999999999976655 44678889999999999999999986 56
Q ss_pred eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEE--EECCCC------------ceEEEEeCCCC
Q 001363 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI--WDMNKV------------QLLTTIDAGGG 621 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i--wd~~~~------------~~~~~~~~~~~ 621 (1092)
+-.+||..+-+.++++.... +|++.+++|....++.|+.....-+ =+.+.| +.+..+.. +
T Consensus 213 takl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--H 286 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--H 286 (327)
T ss_pred cceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--c
Confidence 68999999999999998754 9999999999888888764322211 122222 33344443 4
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 622 LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
..+|++++|+|+|+..++|+.||.|++.....
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 56799999999999999999999999986553
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-26 Score=224.13 Aligned_cols=287 Identities=16% Similarity=0.240 Sum_probs=237.9
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001363 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
+..-.+.|.++.|+++|. ++++++.|.+++|||..+|+.+++ +..+.-.|..+.|.....
T Consensus 10 f~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~ 69 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSN 69 (311)
T ss_pred cccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCc
Confidence 344466999999999998 577788899999999999998876 555777889999988888
Q ss_pred EEEEEeC--CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 410 LLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 410 ~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
.++.++. |.+|+.-++.+.+.++ -+.||...|++++.+|-+. .+++++.|++|++||++..++...+.....+
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p 144 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP 144 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc
Confidence 7777766 7899999999997776 7899999999999999998 8999999999999999999888877655555
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEec---CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+. +| ++.|-++|++...+.|++||++... +-.++. ......+.+.|||||++++.+.. .+.+++.|.
T Consensus 145 i~--Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDA 216 (311)
T KOG1446|consen 145 IA--AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDA 216 (311)
T ss_pred ce--eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEc
Confidence 54 45 5577888888888899999998753 223332 33557899999999999998865 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
-+|..+.++.++......-...+|+||++++++|+.||+|.+|++++|..+..+... ....+.++.|+|.-.++++++
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~- 294 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS- 294 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC-
Confidence 999999999998744444467889999999999999999999999999999999875 335688999999877777665
Q ss_pred CCeEEEEECC
Q 001363 643 ENRIKILETP 652 (1092)
Q Consensus 643 dg~i~iw~~~ 652 (1092)
..+.+|-..
T Consensus 295 -s~l~fw~p~ 303 (311)
T KOG1446|consen 295 -SNLVFWLPD 303 (311)
T ss_pred -ceEEEEecc
Confidence 467777544
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=3.7e-27 Score=222.50 Aligned_cols=286 Identities=13% Similarity=0.158 Sum_probs=240.1
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
.+.||+.+++.+.++.+|.+|.+++.|.+..+|--..|+.+. ++.||++.|+|++..-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999998887666 8899999999999999999 89999999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEec-----CCeEEEEEcC-------CCCceEEecCCCCceEEEEEc
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS 538 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~i~~~~~s 538 (1092)
|+++|+++..++ ...+|..+.|++ +|.+++.... .+.|.++|++ ..++...+..+...++.+-|+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999997 667899999966 4455555543 3569999988 445567778888899999999
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCCeE-EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001363 539 ANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
|-+++|++|.. ++.|.+||.++|.. +..-..|. ..|+.++++++..++++++.|.+-++||..+-+.++++.
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99999999986 56699999999854 44445555 799999999999999999999999999999999999987
Q ss_pred CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC--------------CCCceeeecccccCceeeeeecCCCccccccc
Q 001363 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILET--------------PESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (1092)
.. .+|++.+++|-..+++.|+.....-+=.. -..+.+...++|-++|++++++
T Consensus 230 te---~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh---------- 296 (327)
T KOG0643|consen 230 TE---RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH---------- 296 (327)
T ss_pred ec---ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC----------
Confidence 65 35899999998888877765433222211 1224566778999999999997
Q ss_pred cCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
|+|+..++|+.||.||+..++
T Consensus 297 ------------PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 ------------PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ------------CCCcccccCCCCceEEEEEec
Confidence 789999999999999986544
No 76
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.7e-27 Score=235.95 Aligned_cols=282 Identities=20% Similarity=0.365 Sum_probs=233.6
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC---
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG--- 408 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg--- 408 (1092)
-|.+.|.++... ++ .+.+|+.||.++|||.. |+.... +.||.++|.+++|--..
T Consensus 103 ~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~ 159 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSS 159 (423)
T ss_pred cchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCcc
Confidence 477899999998 45 58999999999999975 555543 78999999988886433
Q ss_pred CEEEEEeCCCEEEEEEccCCCccc-ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC--------------
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-------------- 473 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-------------- 473 (1092)
..+++++.|.++++|.++.++... ......||...|.+++..++|. .+++|+.|.+|.||+.+
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhh
Confidence 369999999999999998776532 2223459999999999999999 89999999999999932
Q ss_pred -----------CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC
Q 001363 474 -----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 474 -----------~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~ 542 (1092)
++.++-++.||.++|.++.|.+ ...+++++.|.+|+.||+.+++....+... ....++.++|..+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSK 313 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccc
Confidence 1224567889999999999965 358999999999999999999887776644 4788999999999
Q ss_pred EEEEEecCCCCceeEEEEeCCCCe---EEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc-eEEEEe
Q 001363 543 RLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ-LLTTID 617 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~-~~~~~~ 617 (1092)
+|++++. +..+++||++++. ....+.+|. +.|.++.|+|... +|++|+.|+++++||+++.+ ++..+.
T Consensus 314 Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 314 LLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred eeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 9999987 6679999999764 356778887 8999999999865 46779999999999999877 888888
Q ss_pred CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.|. ..|.++.|+. +.++++|+.|.+|+|+...
T Consensus 387 ~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 387 GHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 774 4588888875 7789999999999998654
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.4e-28 Score=264.96 Aligned_cols=310 Identities=15% Similarity=0.198 Sum_probs=224.6
Q ss_pred ceeeecc-cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 325 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~-~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...+.+. .|.+.||++.||+||+ |||+|+.||.|+||.+...+....... +.. |... . +.. .+.+..+.
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~---~~~-~~~~-~---~~~-~s~~~p~~ 326 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEG---DSS-CMYF-E---YNA-NSQIEPST 326 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhccccc---ccc-hhhh-h---hhh-ccccCccc
Confidence 4456667 9999999999999999 699999999999999977544221000 000 0000 0 000 00011111
Q ss_pred ECC---CCC--EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 404 WSP---DGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 404 ~sp---dg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
-++ .++ ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|++++.|++|++|++....|+
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL 403 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL 403 (712)
T ss_pred cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence 111 011 11112222222222211111123344788999999999999876 6999999999999999999999
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
..|. |...|+|++|+|.. .+++++|+-||.+|+|++...+...- .....-|++++|.|||++.+.|+. +|.++
T Consensus 404 ~~F~-HndfVTcVaFnPvD-DryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~----~G~C~ 476 (712)
T KOG0283|consen 404 KVFS-HNDFVTCVAFNPVD-DRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTF----NGYCR 476 (712)
T ss_pred eEEe-cCCeeEEEEecccC-CCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEe----ccEEE
Confidence 9996 99999999999984 48999999999999999876554443 334468999999999999999987 66799
Q ss_pred EEeCCCCeEEEEEeeccc-----cCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 559 EWNESEGAIKRTYQGLQL-----QHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
+|+....+......-+.. ....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+.+......-....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 999988777665543321 12379999999754 358899999999999999999998888765555556789999
Q ss_pred CCCEEEEEeCCCeEEEEECCCC
Q 001363 633 NGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 633 ~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
||++++++++|..|++|+....
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCC
Confidence 9999999999999999998654
No 78
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.3e-26 Score=209.95 Aligned_cols=308 Identities=18% Similarity=0.227 Sum_probs=237.7
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEE-eeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.++.+|... ..|.+|+|+|.|. |.|+|+..++++|-....-..++. .+-.. ......++ .-+.|.+.|.|.+
T Consensus 24 ~~i~~l~ds-qairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~---~pp~v~~k--r~khhkgsiyc~~ 96 (350)
T KOG0641|consen 24 EAINILEDS-QAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAK---QPPSVLCK--RNKHHKGSIYCTA 96 (350)
T ss_pred EEEEEecch-hheeeEEecCCCc-eEEeccCCceEEEEccccccCccccccccc---CCCeEEee--eccccCccEEEEE
Confidence 466677664 4999999999998 799999999998875432211110 00000 00001111 1456899999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccC--CCcccceEEEcccccceeEEEEecC---CCcEEEEEEe-CCCcEEEEECCCCce
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSR 477 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~-~d~~i~vwd~~~~~~ 477 (1092)
|||+|++||+|+.|.+|++.-.+. ......-.++.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence 999999999999999999876653 3333344467789999999999754 222 566654 578889999999999
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEccCCCEEEEEecC
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.+.+.+|.+.|.++-- =++..+++|+.|.+|++||++-..++..+... ...|.+++..|.|++|+++..
T Consensus 176 ~~a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~- 251 (350)
T KOG0641|consen 176 FHALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA- 251 (350)
T ss_pred ceeecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence 9999999999988742 15679999999999999999988777655332 246899999999999999876
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeCCCCCCCCc
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENP 626 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~ 626 (1092)
+....+||++.++.++.+..|. ..|.++.|+|...++++++.|..|++-|+... -.+.....| ...+.
T Consensus 252 ---dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i 323 (350)
T KOG0641|consen 252 ---DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAI 323 (350)
T ss_pred ---CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceE
Confidence 5568999999999999999988 89999999999999999999999999998642 122233333 34467
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 627 RICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.+.|+|..--+++.+.|.++.+|.+.
T Consensus 324 ~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 324 QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEecCccceeeeccCcceEEEeccC
Confidence 88999999899999999999999764
No 79
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=7.6e-28 Score=231.28 Aligned_cols=306 Identities=13% Similarity=0.196 Sum_probs=237.5
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001363 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
...+.+.+|++||.++|+|+.|.+|+|+|++..-.... +.+ +
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~---~~e-----------------------------------m 153 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK---PKE-----------------------------------M 153 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc---hhh-----------------------------------h
Confidence 45688999999999999999999999999873211000 000 0
Q ss_pred eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001363 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 781 (1092)
..+ ++.+..++....-.|...|+.+.|.|....|++++.|+++++||+....... ..+
T Consensus 154 ~~~--------------~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--------A~K 211 (430)
T KOG0640|consen 154 ISG--------------DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--------AFK 211 (430)
T ss_pred ccC--------------CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH--------HHH
Confidence 000 0011111111112388999999999999999999999999999987643200 011
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEe---cCCCCCeEEEEEcCCCCC
Q 001363 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTI---MPPSPTATSLAFNPHDNN 857 (1092)
Q Consensus 782 ~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~d~~ 857 (1092)
++ ....+|.++.|+|.|.+|++|.| .++++||+++.++...- ..|.+.|+++.+|+ .++
T Consensus 212 ~~----------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~ 274 (430)
T KOG0640|consen 212 VF----------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS 274 (430)
T ss_pred Hh----------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence 11 15678999999999999999997 78999999999887654 35788999999999 899
Q ss_pred EEEEEeCCCcEEEEEcCCceeeEeec-cccC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001363 858 VIAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~-~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
+.++|+.||.|+|||--+++|+.++. +|.+ .|.+..|..+|+++++.|.|..+++|.+.++.......=....+..
T Consensus 275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq-- 352 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ-- 352 (430)
T ss_pred EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch--
Confidence 99999999999999999999998885 4654 7899999999999999999999999999997633322111111211
Q ss_pred CCCceEEEEccCCCEEEEE--eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 936 APSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
.--+...|+....+++.- ..+.+.-||..++..+..+..+|.+.+..+.-||.+.-++||+.|..+|+|--
T Consensus 353 -~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 353 -KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred -hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 124567788888888874 44679999999999999989999999999999999999999999999999964
No 80
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.7e-26 Score=257.16 Aligned_cols=289 Identities=12% Similarity=0.122 Sum_probs=224.0
Q ss_pred CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CCCEE
Q 001363 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l 411 (1092)
|-..|.....++|+.. +++++.+..+..|+...|..+. +........-....+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4457778888899763 5677777888899877664331 11111111112234789999999999999 89999
Q ss_pred EEEeCCCEEEEEEccCCCc----ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 412 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+++++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1234468899999999999998643 7999999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
|.+++|++ ++.+|++++.||+|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|.+||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999965 6789999999999999999998888777777654 45678999988888887665567889999998754
Q ss_pred -EEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 567 -IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 567 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
.......+. ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.-
T Consensus 249 ~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk~ 315 (493)
T PTZ00421 249 SPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPKW 315 (493)
T ss_pred CceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEecccc
Confidence 333333222 24566678999999999887 59999999999998877665432 2356788888843
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=9.1e-27 Score=261.58 Aligned_cols=284 Identities=17% Similarity=0.284 Sum_probs=248.5
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.|...+.|..|. ++ .+++|+.|++|++||..++..+.. -+.||.+.|.+++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 356689999999 44 489999999999999999987753 177999999999999889999
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
++|+.|.++++||..+|++.. .+.+|.+.|.++...+. .+++|+.|.+|++|++.++.+++.+.+|.++|+++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999998777 78899999999987653 68899999999999999999999999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-eEEEE
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT 570 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 570 (1092)
..+ +.++++|+.||+|++||+.+.+....+.+|...|.++.+.+. ..+++++. +..|++||+.++ +++.+
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 873 579999999999999999999999999999999999987766 88999987 567999999999 99999
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 650 (1092)
+.+|. ..+..+. ..++++++++.|++|++||..+++++..+..+ +...|..+++. ...+++++.||++++||
T Consensus 409 l~~h~---~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 409 LQGHT---SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred hcCCc---ccccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99988 6665444 45689999999999999999999999999874 23446666655 57899999999999999
Q ss_pred CCCCceeeec
Q 001363 651 TPESNSVDAA 660 (1092)
Q Consensus 651 ~~~~~~~~~~ 660 (1092)
++++.....+
T Consensus 481 l~~~~~~~~l 490 (537)
T KOG0274|consen 481 LRSGTLIRTL 490 (537)
T ss_pred cccCchhhhh
Confidence 9998777655
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=4.2e-27 Score=241.57 Aligned_cols=309 Identities=18% Similarity=0.233 Sum_probs=242.5
Q ss_pred ccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCc
Q 001363 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~ 398 (1092)
+..+|..+-..|.+|+..|+++++.|.|.+ +++|+.|.+|++||...-..... .|+ .+.......
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~ 216 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQ 216 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCcccccc
Confidence 345677788889999999999999999996 89999999999999986543321 111 224446678
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCc---------ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
|.+++||+.|..|++.+.....+|+|-...+. +.-...-+||...++|.+|+|+.+. .++|++.||+++|
T Consensus 217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRI 295 (641)
T ss_pred cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEE
Confidence 99999999999999998888899999875433 2223345799999999999999887 7999999999999
Q ss_pred EECCCCce-eEEEe-----cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCC--ceEEEEEc
Q 001363 470 WDAVTGSR-TYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL--GCTRMAYS 538 (1092)
Q Consensus 470 wd~~~~~~-~~~~~-----~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~--~i~~~~~s 538 (1092)
||+...+. ++.++ +..-++++++| ++|+.+|++|+.||.|.+|+........ .-..|.. .|++++||
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 99986543 33332 23446788888 5577899999999999999976543322 2334444 89999999
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCCEEEEEe------CCCcEEEEECCCCc
Q 001363 539 ANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQ 611 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s------~dg~i~iwd~~~~~ 611 (1092)
+||++|++-+. +..+++||++.. +++....+.. ...+-+.++|+|+.+.|++|+ ..|++.+||..+..
T Consensus 374 ~dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 374 YDGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred cccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99999999876 667999999865 4444444433 234567789999999999975 45789999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.+..+... ...|..+.|+|.-+.+++++.||.+++|--.
T Consensus 449 ~v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 449 TVYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eEEEecCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence 99998866 3468899999999999999999999997544
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.5e-26 Score=260.64 Aligned_cols=305 Identities=17% Similarity=0.236 Sum_probs=237.5
Q ss_pred ccccEEEEEEecCCcEEEEee--cCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001363 733 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
+...|.++..+|+|..+++++ .||.+++|+.+.-.. ....++..-...+.+ . ..|.+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~--m--~~h~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCT--M--DDHDGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhee--e--ccccCceeEEEE
Confidence 445689999999999999999 899999998654211 111122211111111 1 149999999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEcCC------------------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001363 811 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1092)
Q Consensus 811 s~dg~~l~~~sd-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1092)
+|||++||+|+| +.|.||+... ++.+..+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 999999999995 6789998762 346778999999999999999 89999999999999999
Q ss_pred EcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEE
Q 001363 872 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 872 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 951 (1092)
+..+.+.+.++++|.+.|..+.|.|-|++|||-+.|++|+||++.+.... +.+..+..+.........+.|||||.+|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~--k~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE--KSITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee--EeeccchhhCCCcceeeecccCCCcCee
Confidence 99999999999999999999999999999999999999999997763322 2444444444434568899999999999
Q ss_pred EE--EeC---CcEEEEEcCCceeeeeeccCCCCCEEEEEEec--------CC-----C----EEEEEECCCcEEEEEcCC
Q 001363 952 LL--VHE---THLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 952 a~--~~d---~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg-----~----~l~t~~~Dg~i~vwd~~~ 1009 (1092)
++ +.+ ..+.|.+-.+.+.-.. +.||.+++.+++|+| +| . .+|+||.|++|.||....
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 98 322 3588888766655554 668999999999998 11 1 578999999999999876
Q ss_pred CceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001363 1010 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
.+.+..+. ...+. ..++++|+| ||..|.+.+.||+|.+..+.+.+.
T Consensus 314 ~RPl~vi~-------~lf~~--SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 314 PRPLFVIH-------NLFNK--SIVDMSWSP-DGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred CCchhhhh-------hhhcC--ceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHh
Confidence 66653322 11122 235889999 689999999999999999977553
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=236.92 Aligned_cols=282 Identities=15% Similarity=0.211 Sum_probs=230.3
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
..+.|.+++|+|...+=++.+..-.+.+|+...... ...+. .....+.++.|-.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~----------------------~k~~s----rFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV----------------------RKTFS----RFKDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhh----------------------hhhHH----hhccceeEEEeec
Confidence 457899999999777655666665677776433210 11000 1456789999999
Q ss_pred CCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEE
Q 001363 813 NDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 813 dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1092)
||+++|+|++ |.|+|||+++...++.+.+|..++..+.|+|+++..+++|++|+.+++||+.+......+.+|++.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 9999999985 999999988777788999999999999999999999999999999999999999887789999999999
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceee
Q 001363 892 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 970 (1092)
Q Consensus 892 l~~spd-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~ 970 (1092)
.+|+|- +.+++|||.||.|++||+.... .+......+ .+|..+.|-|.|.++|++..+.|++||+.+|...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999995 5689999999999999998743 122222222 2699999999999999999999999999966555
Q ss_pred eeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEe
Q 001363 971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1050 (1092)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1050 (1092)
......|...|+|+++..|++.|+++|-|+.|++||+.+.+.+..+.. | ++| ++++.+| |+..+++|.
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~-----~pv--Lsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY----P-----GPV--LSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec----c-----cce--eeEEecC-CCceEEEec
Confidence 444555999999999999999999999999999999999999987761 1 123 5677788 568999999
Q ss_pred CCCcEEEEec
Q 001363 1051 TNGEVYVIEP 1060 (1092)
Q Consensus 1051 ~dg~v~~w~~ 1060 (1092)
.||.+-+-+.
T Consensus 299 snGlv~~rr~ 308 (487)
T KOG0310|consen 299 SNGLVSIRRR 308 (487)
T ss_pred ccceeeeehh
Confidence 9999877643
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.6e-26 Score=245.56 Aligned_cols=279 Identities=18% Similarity=0.267 Sum_probs=240.7
Q ss_pred ceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001363 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~ 416 (1092)
..-+.||..+ ++|+|.. ..|.+|+..++..... ..-++..|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 4457888655 5777653 6899999999986653 2224789999999999999999999
Q ss_pred CCEEEEEEccCCCcccceEEEcc-cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcCeEEEeec
Q 001363 417 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPH 494 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~i~~~ 494 (1092)
+|.|.|||..+.+.++ .+.+ |...|.+++|+ +. .+.+|+.|+.|..+|+...+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999877666 5667 99999999998 34 799999999999999998877655 88999999999995
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1092)
+|+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|+. ..|++|++||..+|..+..+..
T Consensus 311 --~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 --PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred --CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 4778999999999999999999999999999999999999999 5567777765 5588999999999999888765
Q ss_pred ccccCCceEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 574 LQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
. ..|..+.|++..+.+++ |..++.|.||+..+.+.+..+.+|. ..|..++++|||..+++|+.|.++++|++
T Consensus 387 g----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 387 G----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred C----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 3 58999999999887877 5577899999999999999888774 46999999999999999999999999998
Q ss_pred CCC
Q 001363 652 PES 654 (1092)
Q Consensus 652 ~~~ 654 (1092)
-+.
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 764
No 86
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=3.2e-26 Score=227.02 Aligned_cols=280 Identities=16% Similarity=0.196 Sum_probs=234.2
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCC-cEEEEEEeCCCcEEEEEC
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~ 472 (1092)
-|.+.|.++... ++.|++|+.||.+++||..... ...+.||.++|.+++|.-... .-.+++++.|.++++|-+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~----~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS----IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCce----EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 388899999888 8899999999999999998742 336789999999888754322 115999999999999998
Q ss_pred CCCce----eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-------------------------CCCceE
Q 001363 473 VTGSR----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------------------------SLGARV 523 (1092)
Q Consensus 473 ~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-------------------------~~~~~~ 523 (1092)
+.++. ++...||...|.++.. .+++..+++|+.|.+|.+|+.. ...+..
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 87754 3444699999999987 4577899999999999999831 122445
Q ss_pred EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001363 524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1092)
.+.+|..+|.++.|++ ...+++++. +.+|+.||+.++..+..+.+. ..+.++..+|..+.|++|+.|..++
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~----ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTTN----KSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeecC----cceeEeecccccceeeecCCCCcee
Confidence 6788999999999988 667778876 788999999999999888874 4899999999999999999999999
Q ss_pred EEECCCCce---EEEEeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEEEECCCCc-eeeecccccCceeeeeecCCCcc
Q 001363 604 IWDMNKVQL---LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 604 iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
+||.+++.- ..++.+| ...|.++.|+| +..+|++++.|+++++||+++.. ++..+.+|.+.|.++.|+
T Consensus 326 l~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~----- 398 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN----- 398 (423)
T ss_pred ecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-----
Confidence 999987642 3444444 55899999999 55678999999999999999886 899999999999999997
Q ss_pred ccccccCCceeecCCCCCCCccceeeccccccceecc
Q 001363 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~ 715 (1092)
++.++++|+.|.+++++..
T Consensus 399 ------------------~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 399 ------------------EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ------------------CCceEEeccCcceEEEecc
Confidence 6788999999999999874
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.3e-25 Score=214.09 Aligned_cols=273 Identities=16% Similarity=0.187 Sum_probs=229.5
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC--CCcEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 469 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~v 469 (1092)
+..-.+.|.++.|+++|.+|++++.|.+++|||..+|++++ ++..+...|..++|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 44467899999999999999999999999999999998776 5666777899999988887 4665655 889999
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
-++.+.+.++-|.||...|++++.+|.+ ..+++++.|++|++||++..++...+.....++ ++|.|.|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence 9999999999999999999999997765 689999999999999999888877776665555 789999999998864
Q ss_pred CCCCceeEEEEeCCCC--eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCC-c
Q 001363 550 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P 626 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~ 626 (1092)
...|.+||+++- .+..++.-..........+.|+|||++++.++..+.+++.|.-+|..+.++..+.....+ .
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 337999999853 334444433222367899999999999999999999999999999999988876543322 4
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccc-ccCceeeeeecCCCc
Q 001363 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPIST 677 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 677 (1092)
..+|+||++++++|+.||+|.+|+++++..+..+++ +...+.++.|+|...
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~ 288 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYA 288 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCcee
Confidence 788999999999999999999999999999999988 578888888876433
No 88
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.3e-26 Score=217.08 Aligned_cols=276 Identities=18% Similarity=0.238 Sum_probs=220.0
Q ss_pred CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC-CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
..+.|.+++|||....+++.||.||+||+|+++.. .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 36799999999966668889999999999999873 3332 1255699999999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
++|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+..|+||+.|++|+.||.+...++.++. ..+.++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998533 46789999999999887766689999999999999999999998886 55667777
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eE
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AI 567 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~ 567 (1092)
.. --.+++.+..++.|.+|+++....... ... -.-.+++++...|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 54 225899999999999999976554332 221 2336889999898888788876 455666666554 44
Q ss_pred EEEEeecccc------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001363 568 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 568 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
-.+|+.|... ...|++++|+|....|++++.||++.+||-.....+.+.+.+ ...|.+++|+.+|.++|-+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence 5566777621 235788999999999999999999999998887777766544 34699999999999887664
No 89
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.9e-26 Score=251.00 Aligned_cols=277 Identities=14% Similarity=0.195 Sum_probs=212.1
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCc------C------------------cCc-ccccc---------
Q 001363 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LST-EATTK--------- 777 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~------~------------------~~~-~~~~~--------- 777 (1092)
.|.+.|.++.||+||++|++++.||.|+||.+..... . ... .....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4899999999999999999999999999999876111 0 000 00000
Q ss_pred cCCccccCCCCCceeee-cCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCC
Q 001363 778 VPPRLYQPRHGPQFMVN-DTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 856 (1092)
Q Consensus 778 ~~~~~~~~~~g~~~~~~-~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~ 856 (1092)
..-.+....... +... -....+|...|..+.||.++-+|-+.-|.+|++|++...++++.|. |.+.|+|++|+|-|.
T Consensus 345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCcccc-ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000011110000 0000 0012369999999999988754444449999999999999999998 999999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001363 857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1092)
+++++|+-||.|+||++...+++.-..-+ .-|++++|+|||+..+.|+.+|.+++|+....+......+....+.....
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999987776655544 78999999999999999999999999999987766655555554443333
Q ss_pred CCceEEEEccCCC--EEEEEeCCcEEEEEcCCceeeeeeccCC-CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001363 937 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 937 ~~v~~l~~s~dg~--~la~~~d~~i~lwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
..|+.+.|.|... .|+++.|..|+|||..+...+..+...| ...-....|+.||++|++++.|..|++|++....
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 4799999987654 7888999999999998888777754334 3445678899999999999999999999985443
No 90
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.4e-26 Score=217.99 Aligned_cols=313 Identities=13% Similarity=0.155 Sum_probs=235.3
Q ss_pred eeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCcccccc
Q 001363 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 736 (1092)
Q Consensus 657 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 736 (1092)
+..+++|...|++++|+ .||+.+++++.|++|++|++..-....-+.+... ...+.
T Consensus 79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dh 134 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDH 134 (420)
T ss_pred hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCC
Confidence 34678999999999996 7899999999999999999764322222222111 12346
Q ss_pred EEEEEEecCCcEEEEeec-CCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 737 ISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 737 i~~l~~s~~g~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
.+.++|+||-+.++.... ...+++|.+..... |.... ...-||-.. ++ .-|...+..+-...+++
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~~--------f~-~kh~v~~i~iGiA~~~k 200 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDNLE--------FE-RKHQVDIINIGIAGNAK 200 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccccccccc--------cc-hhcccceEEEeecCCce
Confidence 788999999887766554 46899998765432 21110 111122000 10 12667778888889999
Q ss_pred EEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC---c-----eeeEeecccc
Q 001363 816 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---S-----EVISKLEGHS 886 (1092)
Q Consensus 816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~ 886 (1092)
++++++ |..|.+|++. |+.+..+......-+..+.|| +|+++|+++.--.|++|.+-- | +.+..|+||.
T Consensus 201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~ 278 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ 278 (420)
T ss_pred EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence 999998 6789999998 888888887777778899999 999999999999999998732 2 2356789999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee--eeeeeecCCCC-cCCCCCceEEEEccCCCEEEEEeCCcEEEEE
Q 001363 887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--TCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLLVHETHLAIYE 963 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~--~~~~~~~~~~~-~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd 963 (1092)
..|..++||++...++|+|.||+++|||.+-.... ..+.++..... ....+....++++|.|+.||++....+++|.
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA 358 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence 99999999999999999999999999998743211 11223222111 1111344589999999999999999999999
Q ss_pred cCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001363 964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
.++|+....+...|...|+++.|++||++++|+| |..+++..-..|
T Consensus 359 se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 359 SEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred cccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 9999988888888999999999999999999996 788998764333
No 91
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=6.8e-25 Score=247.18 Aligned_cols=237 Identities=10% Similarity=0.095 Sum_probs=185.4
Q ss_pred ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCc-c----cceEEEcccccceeEEEEecCCCcEEEEEEeCCC
Q 001363 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~-~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. . .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence 7899999999999996 89999999999999999986432 1 123357799999999999999874 567999999
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE-----EEEccC
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN 540 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-----~~~s~d 540 (1092)
+|+|||+.+++.+..+. |...|.+++|++ +|.+|++++.|+.|++||++++.....+..|.+.+.. ..|+++
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999999888776 667899999965 6789999999999999999999888888888765432 345689
Q ss_pred CCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 541 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
+.++++++.++..++.|++||+++ ++.+..+..+. +.+.+......+++.++++|+.|++|++|++..+. +..+...
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~ 303 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY 303 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence 999999887655557899999985 55555544332 12333334345568888899999999999998774 3444433
Q ss_pred CCCCCCceEEEccCC
Q 001363 620 GGLPENPRICFNKNG 634 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~~ 634 (1092)
....++.+++|.|..
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 344567889999864
No 92
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=221.00 Aligned_cols=297 Identities=14% Similarity=0.185 Sum_probs=243.9
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+.+.|.||++.||.++...... ++.+++.|.+.+||.+++|.++.. +.||.+.|++++|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKF 198 (481)
T ss_pred eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEe
Confidence 45678899999999999988776 899999999999999999999986 7899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEcc------C--------CC----------------------c-ccceEEEcccccceeEE
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYH------G--------GS----------------------D-ARQQLEIDAHVGNVNDL 447 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~------~--------~~----------------------~-~~~~~~~~~h~~~v~~~ 447 (1092)
++.+.++++++.|++.+||... . ++ . ..+...+.+|.+.|.++
T Consensus 199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 9999999999999999999821 1 00 0 11244688999999999
Q ss_pred EEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEec
Q 001363 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYD 526 (1092)
Q Consensus 448 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~ 526 (1092)
.|...|+ .+++++.|.+..+||+++|+.+..+.||....+.++-+| ..+++++.+.|.+.++||++..- ....+.
T Consensus 279 dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 279 DWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred hhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhhcceeeeec
Confidence 9999999 699999999999999999999999999999999998866 55799999999999999998543 345789
Q ss_pred CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001363 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1092)
+|...|+++.|..|.+ +++++. +.+|.+||+++.. .+.++... .+++.++.+..++.++.--.+..|++|
T Consensus 355 GHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd----S~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD----SPANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred ccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC----CccceeEeecCCceEEeccCCceEEEE
Confidence 9999999999988765 556654 7789999998754 45555543 588899999888888888888999999
Q ss_pred ECCCCceEEEE--eCCCCCCCCceEEEccCC--CEEEEEeCCCeEEEEECCCC
Q 001363 606 DMNKVQLLTTI--DAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPES 654 (1092)
Q Consensus 606 d~~~~~~~~~~--~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~ 654 (1092)
|+...++.... ...++...|.|++|..+. .-|++++.|..+.-|.+...
T Consensus 426 DlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 426 DLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99765433221 223444568899998643 35788889999999987653
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2e-25 Score=210.21 Aligned_cols=253 Identities=16% Similarity=0.246 Sum_probs=212.3
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|...|.+++|+.+|.+||+|+.|+++.+|+++..+.... ....+|.+.|..++|.|.... .+++++.|.+|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 567999999999999999999999999999999998754433 256789999999999998766 799999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.++++........+.++ ++| +++|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 999999998875555554 455 45778999999999999999987766554332 23566788887777766553
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
|.|+|.|.....-+.+..++.|. ....++.|+|+|+++++|+.|..+.+||++.--+...+.... -+|..+.||
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld--wpVRTlSFS 240 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD--WPVRTLSFS 240 (313)
T ss_pred -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc--CceEEEEec
Confidence 36789999988999999999988 888999999999999999999999999999888887776543 369999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceeee
Q 001363 632 KNGTLLAVIANENRIKILETPESNSVDA 659 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 659 (1092)
.||++||++++|..|-|=++++|..+..
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEE
Confidence 9999999999999999988887754443
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.8e-26 Score=230.12 Aligned_cols=293 Identities=14% Similarity=0.191 Sum_probs=235.6
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeee----cccccceeeEeeecCCCCcEEEE
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWD----IGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d----~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
.+.+..|.-.|.||+++||++ +..+++.+++|.=|++.+|+.... +|. ++....+++..- ++|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 366778888999999999999 589999999999999999985521 111 111223333322 4899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+.||||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|.+|++|+++....+.++.
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999988776 6889999999999987666 69999999999999999999999999
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+|...|.++.... -+..+.+|+.|+++++|++ ..+....+.++.+.+.+++|-.+. .+++|+. ++.|.+|++
T Consensus 284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSL 355 (479)
T ss_pred CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeee
Confidence 9999999987643 3345556669999999999 455666778888899999997654 5667765 677999999
Q ss_pred CCCeEEEEEeec-cccC--------CceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeCCCCCCCCceEE
Q 001363 563 SEGAIKRTYQGL-QLQH--------NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 563 ~~~~~~~~~~~~-~~~~--------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~ 629 (1092)
...+++.+.... .... ..|++++..|..+.+++|+.+|.|++|-+..+ .++..+... ..|++++
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~ 432 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLA 432 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEE
Confidence 998887765432 1111 27899999999999999999999999999887 344444433 4589999
Q ss_pred EccCCCEEEEEe
Q 001363 630 FNKNGTLLAVIA 641 (1092)
Q Consensus 630 ~s~~~~~l~~~~ 641 (1092)
|+++|+.+++|.
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999776663
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-24 Score=199.52 Aligned_cols=308 Identities=14% Similarity=0.135 Sum_probs=226.6
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
....|.+++|.|.|...++++...++++-.++.-.....+...+...+.+. -...+.|.+.|.|.+|||
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~-----------~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVL-----------CKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEE-----------eeeccccCccEEEEEecC
Confidence 567899999999999999999999999877654322112222111111111 011224899999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCcee-----eEEecCCCCCeEEEEEcCC---CCCEEEEEe-CCCcEEEEEcCCceeeEee
Q 001363 813 NDAYLFSAS-GGVISLYIVMTFKT-----ILTIMPPSPTATSLAFNPH---DNNVIAIGM-DDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---d~~~lasg~-~dg~v~iwd~~~~~~~~~l 882 (1092)
+|+++++|+ |.+|++..++...+ -..+.-|.+.|..++|-.+ .+.+|++++ .|..|++-|...|+....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999998 68888876653322 2346678999999999642 466788765 4668888899999999999
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEE
Q 001363 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAI 961 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~l 961 (1092)
.||++.|.++ ++-+|-++++|+.|.+|++||+.-.......- ....+.--.+..|.+++..|.|++|+++ .|....+
T Consensus 180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~-~~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD-NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeecc-CcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 9999999886 34578999999999999999998644222110 1111111112479999999999999996 6788999
Q ss_pred EEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCC
Q 001363 962 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL 1041 (1092)
Q Consensus 962 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~ 1041 (1092)
||+..+..++. +-.|+..|.++.|||...|+++++.|..|++=|+... +...+.....-. | .-..+.+.|+|+
T Consensus 258 ydirg~r~iq~-f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv~e---h--kdk~i~~rwh~~ 330 (350)
T KOG0641|consen 258 YDIRGGRMIQR-FHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVVAE---H--KDKAIQCRWHPQ 330 (350)
T ss_pred EEeeCCceeee-eCCCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEEEe---c--cCceEEEEecCc
Confidence 99999999988 4479999999999999999999999999999999754 222222111111 1 123456889997
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 001363 1042 KPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1042 d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
| --|++.+.|.++.+|-++
T Consensus 331 d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 D-FSFISSSADKTATLWALN 349 (350)
T ss_pred c-ceeeeccCcceEEEeccC
Confidence 4 678899999999999874
No 96
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.6e-26 Score=213.01 Aligned_cols=285 Identities=17% Similarity=0.247 Sum_probs=226.5
Q ss_pred ceEEeecCC--CceEEEEEc-----CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC-C
Q 001363 337 PMSMDFHPV--QHTLLLVGT-----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 408 (1092)
Q Consensus 337 V~~v~~spd--g~~llasg~-----~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd-g 408 (1092)
=.++.|||- ++..+|+++ ..|++.|-++..+..+.. +.-+| -.+.+..++||+. .
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHE 73 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCc
Confidence 357889984 442333332 247899999875444432 11111 4578899999994 5
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
..+++++.||+++|||+... -.++..++.|...|.++.|++-.++ .+++++.|++|++|+...++.++++.||...|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI 150 (311)
T ss_pred ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence 67888999999999996533 2455578899999999999998776 67778999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEEEEecCCCCceeEEEEeCCCC-e
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESEG-A 566 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~~-~ 566 (1092)
....|+|. ...++++++.||++++||++.......+..|...+.++.|+.-.. .+++++. ++.|+.||+++- .
T Consensus 151 y~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 151 YQAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRT 225 (311)
T ss_pred EEEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhccc
Confidence 99999987 457999999999999999999888888999999999999998554 5556554 778999999864 4
Q ss_pred EEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCCCceEEEcc-CCCEEEEEeCC
Q 001363 567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLLAVIANE 643 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~d 643 (1092)
.+..+.+|. -.|..+.|+|.. ..|++++.|-++||||...+ ..+.+...| ...+..+.|++ ++.++|..+.|
T Consensus 226 pl~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 226 PLFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred cceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccc
Confidence 566777777 899999999975 56788999999999999854 344455444 34577888887 67899999999
Q ss_pred CeEEEEEC
Q 001363 644 NRIKILET 651 (1092)
Q Consensus 644 g~i~iw~~ 651 (1092)
+.++||+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 99999984
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=8.3e-26 Score=232.14 Aligned_cols=297 Identities=17% Similarity=0.236 Sum_probs=224.3
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001363 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s 811 (1092)
+|...|.++++.|.|.++++|+-|..+++||++.-..+ .+- +..-.+.....|.++.||
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------~~~-----------fr~l~P~E~h~i~sl~ys 223 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------MRS-----------FRQLQPCETHQINSLQYS 223 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------chh-----------hhccCcccccccceeeec
Confidence 47888999999999999999999999999998753210 000 001111356688999999
Q ss_pred cCCCEEEEEeC-CeEEEEEcCCceeeE------------EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce-
Q 001363 812 KNDAYLFSASG-GVISLYIVMTFKTIL------------TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE- 877 (1092)
Q Consensus 812 ~dg~~l~~~sd-g~i~iwd~~~~~~~~------------~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~- 877 (1092)
+.|..+++.+. ...+|+|-...+... .-++|...++|.+|+|.....+++++.||+++|||+...+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 99988888874 779999976544332 2357888999999999888899999999999999998753
Q ss_pred eeEeec-----cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEE
Q 001363 878 VISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1092)
Q Consensus 878 ~~~~l~-----~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 952 (1092)
.+..++ +..-+++.++|++||+++|.|..||.|.+|+..+..... .+.....|.. ...|++++||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence 233332 344578999999999999999999999999986533222 2222222321 23699999999999999
Q ss_pred E-EeCCcEEEEEcCCcee-eeeeccC--CCCCEEEEEEecCCCEEEEEEC------CCcEEEEEcCCCceEEeecccccc
Q 001363 953 L-VHETHLAIYEAEELTC-LKQWFPI--SSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYL 1022 (1092)
Q Consensus 953 ~-~~d~~i~lwd~~~~~~-~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~------Dg~i~vwd~~~~~~~~~~~~~~~~ 1022 (1092)
+ +.|+++++||+.+.+. +.. ..+ ...+-+.++||||.++|+||+. .|.+.+||..+...+.++...
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~-~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--- 456 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNV-RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--- 456 (641)
T ss_pred hccCCCceeeeeccccccchhh-hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC---
Confidence 9 9999999999986553 333 222 2456678999999999999875 367999999999998887622
Q ss_pred CCCCccccccceEEEECCCCCCEEEEEeCCCcEEE-EecCCCC
Q 001363 1023 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV-IEPNEPG 1064 (1092)
Q Consensus 1023 ~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~-w~~~~~~ 1064 (1092)
......+.||| .-+++.+|+.||++++ ||...+.
T Consensus 457 -------~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 457 -------TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred -------CceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence 12345688999 4678999999999986 5655544
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.6e-25 Score=238.88 Aligned_cols=284 Identities=18% Similarity=0.296 Sum_probs=241.8
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEE-EE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~-l~ 403 (1092)
.+.+.|.||+..|..+++.+.. .++++|.||++++|+-..++.+.+. .+.+|.+-|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccce
Confidence 4568899999999999998887 4789999999999998777666432 25568888877 88
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+-+ |+-.|++|+.|.+|.+|...+...+. .+.+|...|.+++...++. ++|||.|.++++|- .+++...+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~ 137 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ 137 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence 886 66679999999999999999987766 7899999999999887775 99999999999995 567778899
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+|...|.+++..+.. .++||+.|++|++|. .++...++.+|..-|+.+++-+++.+ ++|+. ++.|+.|++
T Consensus 138 gH~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsN----Dg~Ir~w~~ 207 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSN----DGSIRLWDL 207 (745)
T ss_pred CcchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecC----CceEEEEec
Confidence 999999999886543 899999999999994 46778889999999999999888664 46654 778999998
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
+|+.+..+.+|. .-++++....++..++++++|++++||+.. .+.+.+..++. .+.++.+-++|. +++|+.
T Consensus 208 -~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 208 -DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred -cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEecc
Confidence 899999999998 899999988888999999999999999976 77788776643 578888888886 778889
Q ss_pred CCeEEEEECCCC
Q 001363 643 ENRIKILETPES 654 (1092)
Q Consensus 643 dg~i~iw~~~~~ 654 (1092)
||.|+||.....
T Consensus 279 DG~VrVfT~~k~ 290 (745)
T KOG0301|consen 279 DGRVRVFTVDKD 290 (745)
T ss_pred CceEEEEEeccc
Confidence 999999987744
No 99
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=232.58 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=240.5
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 56799999999999999999999999999999998776 333446788889999999999999 789999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+...+...++.||.+.|+++.|.... ..+++|+.|.+|+.||+....+..+.. ....+..++.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999986543 349999999999999999866655433 22334444444 455666665
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC--CCCCceEE
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC 629 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 629 (1092)
+..|+.||.++..+......+ +.|+++..++++..+++++.|.++.+.|+.+.+....+...+. ....+.+.
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLG----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred --ccceEEEeccCCceeeEeecC----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 556999999999999888874 4899999999999999999999999999999998888865532 23478899
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCceeeecccccCc--eeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
|||++.|+++|+.||.|+||++.+++....+...... |++++|+ |.|..+++++.+
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~ 452 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ 452 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence 9999999999999999999999999888877765554 9999997 567788899998
Q ss_pred cccceec
Q 001363 708 NKSEVEK 714 (1092)
Q Consensus 708 ~~i~lw~ 714 (1092)
+.+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 9888884
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.5e-26 Score=241.79 Aligned_cols=353 Identities=18% Similarity=0.216 Sum_probs=262.9
Q ss_pred cCCCCce---EEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 332 EGSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 332 ~h~~~V~---~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
.|...|. .+..++.+.++|.+|+.||.|++|++........ .+ ....+..|.+.|+.++...+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~ 85 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNG 85 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCC
Confidence 3444555 5556655545799999999999999875432210 00 011266799999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEE-ecCCCcEEEEEEeCCCcEEEEECCCC--ceeEE-----
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTG--SRTYS----- 480 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~-s~d~~~l~l~s~~~d~~i~vwd~~~~--~~~~~----- 480 (1092)
+.|+++|.|.+|++|+...+. -....+++.|...|.|+++ -++.. .++|||-|+.|.+||+.+| +.+.+
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred CceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 999999999999999998873 1222267889999999999 66666 8999999999999999988 33332
Q ss_pred ---Ee-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001363 481 ---FE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1092)
Q Consensus 481 ---~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1092)
+. |+..+|++++.++ +|..+++|+..+.+++||.++.+.+..+.+|...|..+..++||+++++++. +++
T Consensus 163 ~~sl~sG~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----Dgt 236 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGT 236 (735)
T ss_pred cccCCCCCccceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----Cce
Confidence 23 7888999998844 5679999999999999999999999999999999999999999999999986 778
Q ss_pred EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE
Q 001363 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1092)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1092)
|++||+...+++.++..|. ..|+++..+|+-..+++|+.||.|+.=|+.+......+-... .+|..+..+...+-
T Consensus 237 IrlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~ 311 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNS 311 (735)
T ss_pred EEeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCC
Confidence 9999999999999999988 779999999999999999999999999998853333322221 24677777765566
Q ss_pred EEEEeCCCeEEEEECCCCceeeecccc-------cCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccc
Q 001363 637 LAVIANENRIKILETPESNSVDAAGVL-------SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 709 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 709 (1092)
+-+++.|+.|+-|.....-.+...... ...+.+....|+...-+..+-... + .-.|.+.+++-...|.
T Consensus 312 ~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~-~----mL~dkRhVlTkDa~gn 386 (735)
T KOG0308|consen 312 VWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKH-A----MLNDKRHVLTKDAKGN 386 (735)
T ss_pred ceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhh-h----hhcCcceEeeecCCCC
Confidence 688889999999987643222111111 111111111111111110000001 1 1467889999999999
Q ss_pred cceeccc
Q 001363 710 SEVEKPL 716 (1092)
Q Consensus 710 i~lw~~~ 716 (1092)
+.+||+-
T Consensus 387 v~lwDIl 393 (735)
T KOG0308|consen 387 VALWDIL 393 (735)
T ss_pred EEEEEee
Confidence 9999965
No 101
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-23 Score=230.49 Aligned_cols=567 Identities=12% Similarity=0.109 Sum_probs=351.6
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCc-EEEEEEeCCCcEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW 470 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-l~l~s~~~d~~i~vw 470 (1092)
+.|-...-..-.||+|+++++....+ .|.||...+|+++. .+.+|..++..+.+.|.... .++++++.||.|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 44444444456799999999888655 59999999999887 78899999999999987663 478899999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeeccc-CCccEEE-EEecC------------CeEEEEEcCCCCceE--EecCCCCceEE
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAK-ENIHFIF-SISVD------------GKIKAWLYDSLGARV--DYDAPGLGCTR 534 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~l~-s~~~d------------g~i~vwd~~~~~~~~--~~~~~~~~i~~ 534 (1092)
|...+..++++..+.. +..+.+.+. -+...++ .+..| +.++-+.+.+..... ....+. .-.+
T Consensus 88 d~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~ 165 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKS 165 (792)
T ss_pred cCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCcc
Confidence 9999999988864432 322222110 0000111 11111 111111111110000 011111 1356
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--Cc
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQ 611 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~ 611 (1092)
+.+++.|.+...+. +..+.+|+..++.... ....+..|...+++.+++|+++++++|..||.|.+|.--. +.
T Consensus 166 I~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~ 240 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD 240 (792)
T ss_pred EEEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc
Confidence 78888888777665 3348888887755111 1111222335579999999999999999999999996433 22
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeec
Q 001363 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1092)
....-..|-|...|.+++|+++|.+|.+|+..+.+.+|.+.+++... +.
T Consensus 241 ~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf-LP------------------------------ 289 (792)
T KOG1963|consen 241 SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF-LP------------------------------ 289 (792)
T ss_pred cccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc-cc------------------------------
Confidence 22222223334579999999999999999999999999998875211 11
Q ss_pred CCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcC
Q 001363 692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 771 (1092)
Q Consensus 692 ~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~ 771 (1092)
. -.+.|..+.+|||+...+....|..|.+-..+.-..
T Consensus 290 --------------------------------------R--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~--- 326 (792)
T KOG1963|consen 290 --------------------------------------R--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI--- 326 (792)
T ss_pred --------------------------------------c--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh---
Confidence 1 345688889999999888888898888876533211
Q ss_pred cccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC-CCEEEEEeCCeEEEEEcCCceeeEEec-----CCC--
Q 001363 772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSASGGVISLYIVMTFKTILTIM-----PPS-- 843 (1092)
Q Consensus 772 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d-g~~l~~~sdg~i~iwd~~~~~~~~~~~-----~~~-- 843 (1092)
..++.-..+.+.. . ......-.+.++++|- +..+..+-.|.|.+||+.+.+.+..+. .+.
T Consensus 327 -----k~tIsgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~ 394 (792)
T KOG1963|consen 327 -----KSTISGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD 394 (792)
T ss_pred -----hhhccCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCc
Confidence 0011111111000 0 0013444567888884 444444457999999998877665543 122
Q ss_pred ----CCeEEEEEcCCCCCEEEEEe--------CCC--cEEEEEcCCcee----eE-eeccccCCeEEEEEcCC-C-CEEE
Q 001363 844 ----PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEV----IS-KLEGHSKRVTGLVFSDA-L-NILV 902 (1092)
Q Consensus 844 ----~~i~~l~~s~~d~~~lasg~--------~dg--~v~iwd~~~~~~----~~-~l~~h~~~V~~l~~spd-g-~~l~ 902 (1092)
-.+++++.+. .|.+++|+- .|| .+++|-...... .. ....|...+...+|.+. . ..++
T Consensus 395 ~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~v 473 (792)
T KOG1963|consen 395 VNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCV 473 (792)
T ss_pred ceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeE
Confidence 2468888888 699999864 333 567887654332 22 22458887777666542 2 3899
Q ss_pred EEeCCCcEEEEEcCCCceee-----eeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCC
Q 001363 903 SSGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS 977 (1092)
Q Consensus 903 s~s~Dg~I~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h 977 (1092)
|+|.||.++||-+.+.+... ..+.....-+. ..+++++||.||..|+++.+++|.+||..+...+......-
T Consensus 474 ta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~ 550 (792)
T KOG1963|consen 474 TASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSR 550 (792)
T ss_pred EeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccc
Confidence 99999999999984432111 11222211122 36899999999999999999999999998843322222222
Q ss_pred CCCEEEEEEec----CCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCC------CccccccceE---EEECCCCCC
Q 001363 978 SVPISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT------TSCLHVYPHA---IAAHPLKPT 1044 (1092)
Q Consensus 978 ~~~v~~l~fs~----dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~---~~~~p~d~~ 1044 (1092)
..++..+.|.. ++. +.......+.+|++-+..+...+......... .....+-+.. +++.| .
T Consensus 551 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p---~ 625 (792)
T KOG1963|consen 551 NWPIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLP---E 625 (792)
T ss_pred ccchHhHhhhcccccccc--eeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecc---c
Confidence 34444444433 333 23335678999999999888743322222220 0011122222 23333 2
Q ss_pred EEE--------EEeCCCcEEEEecCCCC
Q 001363 1045 QFA--------VGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1045 ~l~--------~~~~dg~v~~w~~~~~~ 1064 (1092)
.+. +.+.++.|.+|+...++
T Consensus 626 ~~~~~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 626 LLLVVKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred chhhhhhhhhhcccccceEEEecCCCch
Confidence 333 77788888888886655
No 102
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.5e-24 Score=244.25 Aligned_cols=270 Identities=17% Similarity=0.198 Sum_probs=211.0
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc----------cceEEEcccccceeEEEEec-CCCcEEEEEEeC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD 463 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~ 463 (1092)
|-..|.....++|+..+++++.+.....|+...+..+ .....+.+|.+.|.+++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 4456667777888777788777777777876544321 11224779999999999999 777 8999999
Q ss_pred CCcEEEEECCCC-------ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001363 464 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1092)
Q Consensus 464 d~~i~vwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 536 (1092)
|++|++||+.++ +.+..+.+|...|.+++|+|.. +.+|++++.|++|++||+.+......+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999998753 35899999999999999999888888888999999999
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCc-
Q 001363 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ- 611 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~- 611 (1092)
|+|+|.+|++++. ++.|++||+++++.+..+.+|. ...+..+.|.+++..+++++ .|+.|++||+++..
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999976 6779999999999998888876 23345678899888888754 47899999998754
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCceeeeccc-ccCceeeeeecC
Q 001363 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP 674 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~ 674 (1092)
.+.....+. ...+....|+++++++++++ .|+.|++|++.++..+..... ....+..+++.|
T Consensus 250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 333333222 23455677899999999887 499999999998876654432 233455555554
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-24 Score=210.12 Aligned_cols=241 Identities=19% Similarity=0.278 Sum_probs=205.2
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC--EEEEEeCCCcEEEEEcCC
Q 001363 799 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~ 875 (1092)
..|...++++|+ ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ ... .|++|+.||.|.+|+...
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 359999999998 679999998 89999999999999999999999999999998 554 899999999999999999
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe
Q 001363 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
.+++..+++|.+.|+.++.+|.|++.++.+.|+.++.||+-.|+......+.. ..+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999877443222222 234599999999999998
Q ss_pred CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceE
Q 001363 956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus 956 d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
.+.|-+|.+.+......... ..++.++.|- ++..|++|+.|+.|.+||.+++...+.+. .|...|..+.
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~ 256 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIA 256 (362)
T ss_pred ccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee--------cchhheeeeE
Confidence 89999999988777665432 3567777775 56789999999999999999988887776 3566777665
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001363 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1036 ~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
.--.| ++.+|++++.||.|++||+...
T Consensus 257 ~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 257 SYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEecC-CceEEEEeccCceEEEEEcccc
Confidence 54555 5789999999999999999644
No 104
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=1.3e-23 Score=220.63 Aligned_cols=216 Identities=16% Similarity=0.184 Sum_probs=162.4
Q ss_pred eecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCccc---ceEEEcccccceeEEEEecCCCcEEEEEEeCCCc
Q 001363 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~ 466 (1092)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|.... .-..+.+..-.|.++.|+|.... +++ .+..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~-s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILA-SGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEE-eccCce
Confidence 4889999999999999 77899999999999999998543221 11223344457899999998774 344 455889
Q ss_pred EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCC-ceEEEEEccCCCEE
Q 001363 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRRL 544 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~-~i~~~~~s~dg~~l 544 (1092)
++|||+.+++.+.++.+|...|.++.| +.||.+|++++.|+.|+|||.+.... +.....|++ .-..+.|..+-.+|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 999999999999999999999999999 66889999999999999999886543 445555554 33456777776678
Q ss_pred EEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCce
Q 001363 545 FSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~ 612 (1092)
++.+.+......|++||.+.. ..+.++.-.. ...+.---|.||.+.++.+ -.+.++..+.+...+.
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP 297 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP 297 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence 887776666677999998753 3444444333 2345556788998877654 4677888888776543
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.4e-25 Score=223.50 Aligned_cols=250 Identities=21% Similarity=0.280 Sum_probs=212.9
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceE--------------EE-cccccceeEEEEecCCCcE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--------------EI-DAHVGNVNDLAFSAPCKQI 456 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--------------~~-~~h~~~v~~~~~s~d~~~l 456 (1092)
...|.-+|.+++++||+++..+++.+++|.=|++.+|...+... .- ++|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 55699999999999999999999999999999999887431110 11 37888999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 536 (1092)
+|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|.... ..+++++.|+.|++|+++....+.++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 89999999999999999999999999999999999996443 5799999999999999999988889999999999998
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001363 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1092)
...-++.+-+++. |.++++|++. .+....+.++. +.+.|++|-.+ .++++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccc----cceeEEEecc-ccceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 8888877777765 6779999994 33445666766 78999999765 68999999999999999999988766
Q ss_pred eCCCC----------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 617 DAGGG----------LPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 617 ~~~~~----------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
....+ ...|++++..|...++|+|+.+|.+++|...++
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 43211 125788999999999999999999999998876
No 106
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=4.5e-25 Score=247.96 Aligned_cols=279 Identities=17% Similarity=0.240 Sum_probs=242.2
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. .+++|+.|.+++|||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56788888888 67899999999999999999875552 3889999999999987555 799999999999999999
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
|++.+.+.+|...|.++.. ....+++|+.|.+|++|+++++..+..+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 9999999999999999976 34578899999999999999999999999999999999987 889999987 5
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCCCCceEEEccC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
+.|.+||+.+++++..+.+|. ..|.++.+.+. +.+++|+.|++|++||+.++ +++.++..|... +.. ....
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~--l~~~ 422 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSS--LLLR 422 (537)
T ss_pred ceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--ccc--cccc
Confidence 679999999999999999988 99999988776 89999999999999999999 899999877542 333 3345
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeccc-ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001363 634 GTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 634 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l 712 (1092)
+++|++++.|++|++||..++..+..+.+ +...+..+... ...+++++.++++++
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVKL 478 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeEE
Confidence 88999999999999999999999999988 55666655543 356788999999999
Q ss_pred eccccccCc
Q 001363 713 EKPLFARPS 721 (1092)
Q Consensus 713 w~~~~~~~~ 721 (1092)
||+......
T Consensus 479 ~dl~~~~~~ 487 (537)
T KOG0274|consen 479 WDLRSGTLI 487 (537)
T ss_pred EecccCchh
Confidence 998755443
No 107
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.6e-26 Score=225.92 Aligned_cols=293 Identities=11% Similarity=0.157 Sum_probs=233.4
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
++-+..|.||.+.|.|+|=+|..-..+|+|+.||.|+|||+.+.+++.+ +..|.+.|..++
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGIC 116 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEE
Confidence 4556778999999999999998844689999999999999999888765 667999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
+.. ..+++++.|.+|+.|.++.. .++ ++.+ ...+..+.-+..+. .++|||.+ |.|||.....++..+.-
T Consensus 117 v~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smsw 185 (433)
T KOG0268|consen 117 VTQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSW 185 (433)
T ss_pred ecc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCce--eeecccccCCccceeec
Confidence 987 77888999999999998873 222 3333 23456666665566 68898865 99999999999999988
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
....|.++.|+|... .+|++++.|+.|.+||++...++...... -.-..++|+|.+-.++++.. +..++.+|++
T Consensus 186 G~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR 259 (433)
T KOG0268|consen 186 GADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMR 259 (433)
T ss_pred CCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhh
Confidence 888999999988754 58889999999999999988876644322 13456899996655656543 7779999987
Q ss_pred CC-eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 564 EG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 564 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.- ..+..+.+|. ..|..+.|+|.|+-+++||.|.+|+||....+..-..... .....|.++.||.|.+++++|++
T Consensus 260 ~l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 260 NLSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred hhcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCC
Confidence 53 3455556655 8999999999999999999999999999987654332211 12245899999999999999999
Q ss_pred CCeEEEEECCCCce
Q 001363 643 ENRIKILETPESNS 656 (1092)
Q Consensus 643 dg~i~iw~~~~~~~ 656 (1092)
|+.|++|.....+.
T Consensus 336 d~nvRlWka~Asek 349 (433)
T KOG0268|consen 336 DGNVRLWKAKASEK 349 (433)
T ss_pred Ccceeeeecchhhh
Confidence 99999998775433
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=238.05 Aligned_cols=248 Identities=21% Similarity=0.253 Sum_probs=210.6
Q ss_pred CCCcEE---EEEEC-CCCCEEEEEeCCCEEEEEEccCCCcc---cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 395 PGVSVN---RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 395 h~~~V~---~l~~s-pdg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
|...|. ++..+ |.++||.+||.||.|++|++...... .....+..|...|+.++...+|+ .|+++|.|-+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceE
Confidence 444444 44444 46788999999999999998754331 12346788999999999999998 79999999999
Q ss_pred EEEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--eE--------Eec-CCCCceEE
Q 001363 468 KVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTR 534 (1092)
Q Consensus 468 ~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~--------~~~-~~~~~i~~ 534 (1092)
++|+...+ -++.++..|.+.|.++++. ..+...+++|+-|+.|.+||++++.. .. .+. ++..+|++
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 99999887 6788889999999999984 34567999999999999999997633 11 122 56678999
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 614 (1092)
++.++.|..+++|+. ++.+++||.++++.+..+.||. ..|..+..++||..++++|.||+|++||+...+++.
T Consensus 177 LA~N~t~t~ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 177 LAMNQTGTIIVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred eecCCcceEEEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence 999999988888876 4559999999999999999999 999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++..|.. .|.++..+|+-.++.+|+.||.|..=|+.+.
T Consensus 250 T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 250 TYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9988755 4899999999999999999999998888764
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=3.4e-24 Score=216.02 Aligned_cols=285 Identities=16% Similarity=0.185 Sum_probs=244.2
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
...+.++...|... .+.+|+.|.++.++|..+++.+.. ++||.-.|+.+.|+|+...+++
T Consensus 219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~ 278 (506)
T KOG0289|consen 219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVIT 278 (506)
T ss_pred CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheee
Confidence 34788888888744 689999999999999999988875 8899999999999999999999
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC--CcCeEEE
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH--GAPVYSL 491 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~i 491 (1092)
++.|..|+||......... ....|.++|+.+..+|.|. +|++++.|++..+.|+++|+.+...... .-.+++.
T Consensus 279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~ 353 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA 353 (506)
T ss_pred cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence 9999999999998766443 5678999999999999999 8999999999999999999988766542 2347888
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
+|+| ||.+|.+|..||.+++||+..+.....+.+|.++|..++|+.+|-+|+++.. ++.|.+||++.-+...++
T Consensus 354 ~fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 354 AFHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred eEcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhccccee
Confidence 8865 7789999999999999999999999999999999999999999999999986 555999999988888888
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
.... ...+.++.|.+.|.++++++.|=.|++++-.+.+.......+.+......+.|....+++++++.|..++++.+
T Consensus 428 ~l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 7766 45799999999999999998887777777555544433333333345789999999999999999999888754
No 110
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.1e-24 Score=207.78 Aligned_cols=274 Identities=16% Similarity=0.161 Sum_probs=215.2
Q ss_pred ecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 392 VRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 392 l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
-...++.|.+++||| ...+++++|.|++|++|+++....+.. .....|.++|.+++|+.||. .+++|+-|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 335778999999999 556667889999999999987322221 24557999999999999998 79999999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
|+.+++ +..+..|.++|.++.|.+..+-..|++||.|++|++||.+...+...+..++ .+.++.. -..+++++..
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata- 174 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA- 174 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec-
Confidence 999994 5677789999999999877777799999999999999999888887776655 3333322 2334555544
Q ss_pred CCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeCCCC------
Q 001363 551 KEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------ 621 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~------ 621 (1092)
+..|.+|+++++.... .....- ...+++++..++....+.|+-+|.+.|..+..+ +.-.++..|..
T Consensus 175 ---~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 175 ---ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred ---CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 4559999997664332 222221 356889999999888899999999999988876 33334444432
Q ss_pred -CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcc
Q 001363 622 -LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 622 -~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
.-.|++++|+|.-..|++++.||++.+||-.....+.....+..+|++..|+..+..
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSI 307 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCE
Confidence 235788999999999999999999999999988888888999999999999855444
No 111
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9.7e-25 Score=204.75 Aligned_cols=200 Identities=18% Similarity=0.234 Sum_probs=165.4
Q ss_pred CCCCeeEEEEecC-CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001363 801 SQEAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 801 ~~~~v~~~~~s~d-g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
|..+|.++.+.+- ++.+++++ |++|++|+..-.+.++++.+|...|...+|+|...+++++++.|+++++||++....
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK 182 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence 6666666666653 33444455 899999999999999999999999999999999999999999999999999987544
Q ss_pred eEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEE-E-Ee
Q 001363 879 ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-L-VH 955 (1092)
Q Consensus 879 ~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la-~-~~ 955 (1092)
...+..|...|.++.|+. +.+.|+|++.|+.|++||+..-+ .++..+.+|.- .|..+.|||...-|+ + +.
T Consensus 183 ~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~---AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 183 FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGL---AVRKVKFSPHHASLLASASY 255 (311)
T ss_pred eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCce---EEEEEecCcchhhHhhhccc
Confidence 444889999999999997 66889999999999999998743 23444566654 799999999876554 4 68
Q ss_pred CCcEEEEEcCCceeeeeeccCCCCCEEEEEEec-CCCEEEEEECCCcEEEEEc
Q 001363 956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 956 d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
|=+++|||...+.........|+.-|..+.||+ ++.++|+++.|+.++||+.
T Consensus 256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 899999999866655555778999999999998 7789999999999999984
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=4.6e-24 Score=215.14 Aligned_cols=281 Identities=17% Similarity=0.238 Sum_probs=241.2
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
..+.++...|....+++|+.|.++.++|..+++.+. .++||...|+.+.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 467788888887899999999999999999987766 7899999999999999998 79999999999999998888
Q ss_pred eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCceEEEEEccCCCEEEEEecCCCCc
Q 001363 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
.......|..+|+.+..++ +|.||++++.||+..+.|++++......... .-.+++.+|+|||..+.++.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 8888899999999999866 5579999999999999999998887665543 346899999999999988875 7
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
+.|.+||+.++..+..|.+|. ++|..++|+.+|-+++++++|+.|++||++.-+...++...... .+.++.|.+.|
T Consensus 369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG 444 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG 444 (506)
T ss_pred ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence 789999999999999999988 99999999999999999999999999999999988888877654 68999999999
Q ss_pred CEEEEEeCCCeEEEEECCCC--ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001363 635 TLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l 712 (1092)
.+|+.++.+=.|++++-.+. +.+..+..|.+..+++.|. ...+++++++.|..+++
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL 502 (506)
T ss_pred CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence 99999988766766664443 4555566666666666665 45677888888877766
Q ss_pred ec
Q 001363 713 EK 714 (1092)
Q Consensus 713 w~ 714 (1092)
+.
T Consensus 503 ~a 504 (506)
T KOG0289|consen 503 YA 504 (506)
T ss_pred ee
Confidence 54
No 113
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.5e-24 Score=231.42 Aligned_cols=275 Identities=20% Similarity=0.253 Sum_probs=237.9
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
.-+.|| ....||+|... .|++|+..++.... . ...+...|+++.|+++|. +|+.|..+|.|.|||..+.+.+.
T Consensus 181 nlldWs-s~n~laValg~-~vylW~~~s~~v~~-l--~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALGQ-SVYLWSASSGSVTE-L--CSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred hHhhcc-cCCeEEEEecc-eEEEEecCCCceEE-e--EecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhccccc
Confidence 347788 45577777544 59999999987433 2 223378999999999999 89999999999999999999999
Q ss_pred EEec-CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 480 SFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 480 ~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
.+.+ |...|.+++|. +..+.+|+.||.|..+|++..+.... +..|...|..+.|++|++++++++. |+.+
T Consensus 254 ~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~ 325 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVV 325 (484)
T ss_pred cccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccce
Confidence 9998 99999999994 46899999999999999998877665 7889999999999999999999987 6779
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEEE--eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
.|||....+.+..+..|. ..|.+++|+|-. ..|++| +.|+.|++||..++..+..+... ..|..+.|++..
T Consensus 326 ~Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 326 FIWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKY 399 (484)
T ss_pred EeccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCC
Confidence 999998889999999988 999999999975 456664 48999999999999999888654 458999999988
Q ss_pred CEEEEE--eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001363 635 TLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 635 ~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l 712 (1092)
+-++++ ..++.|.||+..+...+..+.+|...|..++++ |||..+++++.|.++++
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS----------------------PDGETIVTGAADETLRF 457 (484)
T ss_pred CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC----------------------CCCCEEEEecccCcEEe
Confidence 766664 457899999999999999999999999999996 78999999999999999
Q ss_pred ecccc
Q 001363 713 EKPLF 717 (1092)
Q Consensus 713 w~~~~ 717 (1092)
|++-.
T Consensus 458 w~~f~ 462 (484)
T KOG0305|consen 458 WNLFD 462 (484)
T ss_pred ccccC
Confidence 99653
No 114
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.6e-23 Score=202.99 Aligned_cols=272 Identities=20% Similarity=0.292 Sum_probs=215.6
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
++.|+.|.|+|.+.. |++++.||++++||+...+.... -.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence 679999999999985 55567999999999988755532 23899999999997 567889
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
|+.||.|+.+|+.++... .+..|..+|.|+.+++-.. .+++||.|++|++||.........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998654 3678999999999998766 79999999999999988765555554 3347888865
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeEEE
Q 001363 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR 569 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~~ 569 (1092)
.+..|+.|+.|..+.+||+++......... -.-.++++++-|++.-.++++-+ |...+..+|.. ..+...
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie--GRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE--GRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec--ceEEEEccCCchHHhhhce
Confidence 556899999999999999998776653322 23478999999988877777762 23334444443 113344
Q ss_pred EEeecccc------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 570 TYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 570 ~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.|+.|... ..+|++++|+|-...+++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||+++.
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 56666522 247899999999999999999999999999999988887644 235899999999999999976
No 115
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4e-25 Score=217.67 Aligned_cols=284 Identities=14% Similarity=0.225 Sum_probs=233.5
Q ss_pred EEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEE
Q 001363 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1092)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd 515 (1092)
.+.||...|.|++=+|..-. .++||+.||.|++||+.+..++.+++.|.+.|..+++.. ..+++++.|++|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998622 699999999999999999999999999999999999854 5799999999999998
Q ss_pred cCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEE-
Q 001363 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL- 594 (1092)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 594 (1092)
++.. ...++.+ ...+..+.-+..+..+++||. .|.|||.....++..+.-.. +.+.++.|+|....++
T Consensus 136 ~~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTILG-KSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeeec-cccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence 7763 3333322 234555666666777888865 39999999888888887665 7899999999876555
Q ss_pred EEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-ceeeecccccCceeeeeec
Q 001363 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 673 (1092)
Q Consensus 595 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~ 673 (1092)
+++.|+.|.+||++.+.++..+...-. -+.++|+|++-.++++.+|..++.+|+... +++....+|...|.++.|+
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 566999999999999999887765433 478999999889999999999999999865 6677888899999888886
Q ss_pred CCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEee
Q 001363 674 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 753 (1092)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 753 (1092)
|-|+-+++|+.|.+||||....+......-.. .-..|.++.||-|.+++++|+
T Consensus 282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ----------------------CCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecC
Confidence 67888999999999999998755443333221 345688999999999999999
Q ss_pred cCCeeEEEeecC
Q 001363 754 SNGVHLMWRWPR 765 (1092)
Q Consensus 754 ~dg~i~~w~~~~ 765 (1092)
.|+.|++|.-..
T Consensus 335 dd~nvRlWka~A 346 (433)
T KOG0268|consen 335 DDGNVRLWKAKA 346 (433)
T ss_pred CCcceeeeecch
Confidence 999999998654
No 116
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.9e-21 Score=209.92 Aligned_cols=279 Identities=16% Similarity=0.218 Sum_probs=226.2
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC-eeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
..|+..-+.++|.|+|. ++.+++.||.|++|+..+.. .... +.-++..|.+++.. +.
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~~--s~ 67 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIACY--SN 67 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEeec--cc
Confidence 37888999999999999 78899999999999987652 2211 22266777777664 55
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeE
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1092)
+|++|+.+++|.+|...+++.-. .+...+-++.+++|+.+|+ +++.||.|-.|++-+..+......+++|.++|.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence 99999999999999999886543 2445667899999999999 899999999999999999999999999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--------CCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001363 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
++.|+| ++.+|++.+-||.|++||++++.....+..- ...+..++|+|+|..+++.+. ++.|.+|+
T Consensus 143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~ 216 (933)
T KOG1274|consen 143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYS 216 (933)
T ss_pred eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEc
Confidence 999965 6689999999999999999988776654332 235678999999766666654 66799999
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001363 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
..+.+....+.....+ ..+..++|+|+|.||++++.||.|.|||.++-.. |.....|.+++|.|+.+.+-.-.
T Consensus 217 r~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 217 RKGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred cCCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEe
Confidence 9999998888775522 3489999999999999999999999999998222 33345689999999988776665
Q ss_pred CCCeEEEE
Q 001363 642 NENRIKIL 649 (1092)
Q Consensus 642 ~dg~i~iw 649 (1092)
..|...+|
T Consensus 290 ~~g~~~~~ 297 (933)
T KOG1274|consen 290 ALGTLGVS 297 (933)
T ss_pred eccccccC
Confidence 55555554
No 117
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.6e-23 Score=201.53 Aligned_cols=243 Identities=17% Similarity=0.246 Sum_probs=203.3
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|.++|+++|.+ |.|+|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|+
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 67899999999996 8999999999999999999886665 566799999999999987433599999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
...-.++.++++|.+.|+.++++|+ +++-++.+.|+.++.|++-.++.-....... ..+.+.|+|.|.+++..+.
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~-- 188 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGR-- 188 (362)
T ss_pred cCCeEEeeeecccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEec--
Confidence 9999999999999999999999875 4789999999999999998887766554433 2344899999998888764
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE-
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF- 630 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~- 630 (1092)
..|-+|.+.+......+... ..+.++.|. ++..+++|++|+.|.+||..+..+...+..|. ..|..+.+
T Consensus 189 ---~~i~i~q~d~A~v~~~i~~~----~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~~ 258 (362)
T KOG0294|consen 189 ---NKIDIYQLDNASVFREIENP----KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIASY 258 (362)
T ss_pred ---cEEEEEecccHhHhhhhhcc----ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch--hheeeeEEE
Confidence 45889988877666555442 246666665 46789999999999999999988888888664 46888774
Q ss_pred -ccCCCEEEEEeCCCeEEEEECCCC
Q 001363 631 -NKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 631 -s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.|++.+|++++.||.|++||+...
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccc
Confidence 467899999999999999999865
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.1e-24 Score=204.98 Aligned_cols=323 Identities=11% Similarity=0.150 Sum_probs=238.5
Q ss_pred CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCc
Q 001363 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 699 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 699 (1092)
++...|..++.......+.+++.|.+.+||.++++.++....+|.+.|.+++|+ +.+.
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh----------------------~s~~ 203 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH----------------------NSGL 203 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec----------------------cccc
Confidence 344568888888777889999999999999999999999999999999888887 4567
Q ss_pred cceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccC
Q 001363 700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 779 (1092)
Q Consensus 700 ~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 779 (1092)
++++++.|++-.||....+ ...|.......+ +.... + -. .|....- .++..
T Consensus 204 L~lTaSGD~taHIW~~av~-------~~vP~~~a~~~h-----SsEeE-~-e~-sDe~~~d---------~d~~~----- 254 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVN-------WEVPSNNAPSDH-----SSEEE-E-EH-SDEHNRD---------TDSSE----- 254 (481)
T ss_pred eEEEccCCcchHHHHHhhc-------CcCCCCCCCCCC-----Cchhh-h-hc-ccccccc---------ccccc-----
Confidence 7788888888888875421 111110000000 00000 0 00 0000000 00000
Q ss_pred CccccCCCCCcee--eecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCC
Q 001363 780 PRLYQPRHGPQFM--VNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 856 (1092)
Q Consensus 780 ~~~~~~~~g~~~~--~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~ 856 (1092)
...|..+. ...++ +|...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|..+.+.++-+| ..
T Consensus 255 -----~sD~~tiRvPl~~lt--gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQ 326 (481)
T KOG0300|consen 255 -----KSDGHTIRVPLMRLT--GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQ 326 (481)
T ss_pred -----ccCCceeeeeeeeee--ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cc
Confidence 01111111 12233 5999999999999999999999 89999999999999999999999999999999 89
Q ss_pred CEEEEEeCCCcEEEEEcCCc-eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001363 857 NVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
+++++.+.|.+.++||+... ..+..|.||++.|+++.|.-| ..+++++.|.+|+|||+..-. .++.+....
T Consensus 327 rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR----splATIRtd--- 398 (481)
T KOG0300|consen 327 RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR----SPLATIRTD--- 398 (481)
T ss_pred eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeecccc----CcceeeecC---
Confidence 99999999999999999853 457889999999999999866 578899999999999998732 123333222
Q ss_pred CCCceEEEEccCCCEEEEE-eCCcEEEEEcCCceeee---eeccCCCCCEEEEEEecCC--CEEEEEECCCcEEEEEcCC
Q 001363 936 APSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLK---QWFPISSVPISQATFSCDC--RMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~---~~~~~h~~~v~~l~fs~dg--~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
.++..++.+..+..||.- .+..|++||+......+ .-..+|..-|+|++|+.+- .-|+++|.|..+.=|++..
T Consensus 399 -S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 399 -SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred -CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 358899999999999995 55679999997544332 2246799999999998764 4589999999999999875
Q ss_pred C
Q 001363 1010 L 1010 (1092)
Q Consensus 1010 ~ 1010 (1092)
.
T Consensus 478 p 478 (481)
T KOG0300|consen 478 P 478 (481)
T ss_pred c
Confidence 4
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-24 Score=202.51 Aligned_cols=252 Identities=20% Similarity=0.334 Sum_probs=209.6
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec--CCCcEEEEEEeCCCcEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIK 468 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~ 468 (1092)
+.+.|++.|..+...--|++||+++.|++|+|+.+..+.....+.+|.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 3667999999999888999999999999999999998877677789999999999999977 677 899999999999
Q ss_pred EEECCCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC---ceEEecCCCCceEEEEEccC---
Q 001363 469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN--- 540 (1092)
Q Consensus 469 vwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~d--- 540 (1092)
||.-++|+ ..+....|...|++++|.|..-|-.|++++.||.|.+.+++... .......|.-.|++++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99988774 34566789999999999999999999999999999999988762 23345667788999999986
Q ss_pred C-----------CEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCC----CEEEEEeCCCcEE
Q 001363 541 G-----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIK 603 (1092)
Q Consensus 541 g-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~dg~i~ 603 (1092)
| +.|++++. ++.|.+|+..+++ ..+++.+|. +.|+.++|.|.- .++++++.||++.
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 5 56888876 6779999988763 344577877 999999999974 5789999999999
Q ss_pred EEECCCC--ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 604 IWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 604 iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
||..... ....++. +.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 237 Iwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 9976632 1122221 1123458899999999999999999999999755
No 120
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.1e-22 Score=229.27 Aligned_cols=248 Identities=12% Similarity=0.172 Sum_probs=189.9
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC-CCcEEEEEEeCCCcEEEEECCCCc--------eeEEEecC
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH 484 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~--------~~~~~~~~ 484 (1092)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|+|||+.++. .+..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5667889999987653 34478899999999999997 56 89999999999999998642 34567899
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
...|.+++|+|.. ..++++++.|++|++||+++......+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 9999999998753 2356899999999999999888766665 4568999999999999998875 56799999999
Q ss_pred CeEEEEEeeccccCCce-----EEEEEcCCCCEEEEEeCCC----cEEEEECCC-CceEEEEeCCCCCCCCceEEEccCC
Q 001363 565 GAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
++.+..+.+|. +.+ ....|++++.++++++.|+ .|++||+++ ++++..+..+.....+......++|
T Consensus 199 g~~i~tl~gH~---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 199 QEIASSFHIHD---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CcEEEEEeccc---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 99999999887 433 2334568999999988764 799999985 6666666555443323333334568
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecc-cccCceeeeeecCC
Q 001363 635 TLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPI 675 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~ 675 (1092)
.++++|+.|+.|++|++..+.....-. .+..++.++++.|.
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 899999999999999998763222111 23445566666654
No 121
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.2e-23 Score=200.61 Aligned_cols=298 Identities=13% Similarity=0.163 Sum_probs=217.1
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
.+.+|+||+++|++++||.||+ .||+++.|++|+||++..-.....+.++ ..-.-+..+.++|+
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R---------------~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIR---------------QNVEYDHPTRVVFA 141 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhh---------------ccccCCCceEEEEC
Confidence 4578899999999999999999 5899999999999999864322211111 11122357789999
Q ss_pred CCCCEEEEEeC-CCEEEEEEccCCCc---ccce------EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 406 PDGSLLGVAYS-KHIVQLYAYHGGSD---ARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 406 pdg~~las~~~-d~~i~iwd~~~~~~---~~~~------~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
||-+-+++... ..++++|.+...+. .... .--+.|.-.|..+-...+++ ++.+++.|..|.+|++. |
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k--~imsas~dt~i~lw~lk-G 218 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK--YIMSASLDTKICLWDLK-G 218 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce--EEEEecCCCcEEEEecC-C
Confidence 99887766544 45799998754322 1110 01124666777788777788 89999999999999988 9
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC--------CCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--------SLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~--------~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
+.+..+......-+..+. +|+|+++++++.--.|++|..- .-.....+.+|...|..++|+++.+++++.
T Consensus 219 q~L~~idtnq~~n~~aav--SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAV--SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred ceeeeeccccccccceee--CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 999888765555555566 5688999999999999999753 222455788999999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCC-------eEEEEE--eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 548 GTSKEGESFLVEWNESEG-------AIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~-------~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
+. ++.+++||..-. +.++.. .-+.. ......+.++|+++.|+... ...+.++..++|+....++.
T Consensus 297 Sk----DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 297 SK----DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELED 370 (420)
T ss_pred ec----CCcEEEeeccceEecCCCchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHH
Confidence 86 667999997522 222222 11111 23344899999998776644 46799999999888776653
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 619 GGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
- +...|.+++|+++|++++++++ ..++++...
T Consensus 371 ~-h~~~Is~is~~~~g~~~atcGd-r~vrv~~nt 402 (420)
T KOG2096|consen 371 I-HSTTISSISYSSDGKYIATCGD-RYVRVIRNT 402 (420)
T ss_pred h-hcCceeeEEecCCCcEEeeecc-eeeeeecCC
Confidence 2 2245899999999999999875 677776533
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.6e-23 Score=223.71 Aligned_cols=275 Identities=15% Similarity=0.211 Sum_probs=221.8
Q ss_pred ccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeE-EE
Q 001363 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FA 809 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~-~~ 809 (1092)
.+|...|..+++.+.. .+++++.||++++|+-..... +-.. ...++.+-|.+ ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~----------------------l~~~--~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY----------------------LETH--AFEGPKGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc----------------------ccce--ecccCcceeeccce
Confidence 4588889888877665 588999999999997432211 1001 11135555555 67
Q ss_pred Eec-CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC
Q 001363 810 LSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 887 (1092)
Q Consensus 810 ~s~-dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 887 (1092)
+.+ ++-.+++|+ |.++.+|......++..+.+|...|.+++... ++. +++|+.|.++++|.. +++...+.+|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 664 444466666 89999999999999999999999999999887 665 999999999999976 566777999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCc
Q 001363 888 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 967 (1092)
Q Consensus 888 ~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~ 967 (1092)
.|+++++-|++ .++|||.|++|++|.-.+ .++++.+|.. .|+.+++-+++.+|-++.||.|++|++ +|
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence 99999999998 899999999999998755 7888899887 899999999999999999999999999 78
Q ss_pred eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEE
Q 001363 968 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1047 (1092)
Q Consensus 968 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~ 1047 (1092)
+++.. ..+|+.-|.++....++..++++|+|+++++|+.. ++.+.+. +|.. .+++ +.+-+ +.-++
T Consensus 210 e~l~~-~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPtt----siWs--a~~L~--NgDIv 274 (745)
T KOG0301|consen 210 EVLLE-MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPTT----SIWS--AKVLL--NGDIV 274 (745)
T ss_pred ceeee-eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCcc----ceEE--EEEee--CCCEE
Confidence 88887 66899999999998999999999999999999987 5555554 2322 3443 33332 45699
Q ss_pred EEeCCCcEEEEecC
Q 001363 1048 VGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1048 ~~~~dg~v~~w~~~ 1061 (1092)
+|+.||.||||-..
T Consensus 275 vg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVD 288 (745)
T ss_pred EeccCceEEEEEec
Confidence 99999999999875
No 123
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4e-21 Score=212.31 Aligned_cols=516 Identities=15% Similarity=0.180 Sum_probs=327.0
Q ss_pred EcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCc-cEEEEEecCCeEEEEE
Q 001363 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWL 515 (1092)
Q Consensus 437 ~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd 515 (1092)
+.|-...-....||+|+++ ++.+. +..|.||...||.++..+.+|..++.++.+.+.... .++++++.||.|++||
T Consensus 12 lgg~n~~~~~avfSnD~k~--l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKF--LFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred eccccceecccccccCCcE--EEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEec
Confidence 3344444445689999994 44333 568999999999999999999999999999887664 6788999999999999
Q ss_pred cCCCCceEEecCCCCceEEEEEcc---CCCEEEEEecCCCCceeEEEEeCCCCeEE-----EEEeecc----ccCCceEE
Q 001363 516 YDSLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIK-----RTYQGLQ----LQHNSVSV 583 (1092)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~---dg~~l~~~~~~~~~~~~i~iwd~~~~~~~-----~~~~~~~----~~~~~v~~ 583 (1092)
+.......++.... ++..+.+.| +-...+..+.. ....+........... .++..+. .....-..
T Consensus 89 ~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~--~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~ 165 (792)
T KOG1963|consen 89 WSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVE--DYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS 165 (792)
T ss_pred CCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecc--cceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence 99888777665543 233333322 11112211110 0111111111111111 1111111 00011355
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-e-CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001363 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-D-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 584 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
+.+++.+.+....- +..+.+|...++...... . .-.+...+++.+++|+++++|++..||.|.+|.--.. .
T Consensus 166 I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~ 238 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------S 238 (792)
T ss_pred EEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------c
Confidence 67777776665554 455888888775511111 0 1112233789999999999999999999999974421 0
Q ss_pred cccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEE
Q 001363 662 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 741 (1092)
Q Consensus 662 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 741 (1092)
. .+-+.++|.- |...|.+++
T Consensus 239 ~-------------------------------------------~~~t~t~lHW-----------------H~~~V~~L~ 258 (792)
T KOG1963|consen 239 D-------------------------------------------DSETCTLLHW-----------------HHDEVNSLS 258 (792)
T ss_pred c-------------------------------------------ccccceEEEe-----------------cccccceeE
Confidence 0 0011111110 667899999
Q ss_pred EecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe
Q 001363 742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 821 (1092)
Q Consensus 742 ~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s 821 (1092)
|+++|.+|++|+..|.+.+|.+..++. .. ++ .-..+|..+.+|||+.+.+...
T Consensus 259 fS~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LP--RLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 259 FSSDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LP--RLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred EecCCceEeecccceEEEEEeecCCCc----------------------cc---cc--ccCCeeEEEEEcCCCCeEEEEe
Confidence 999999999999999999998765421 11 11 2577899999999999887775
Q ss_pred -CCeEEEEEcCCceeeEEecCC-----------CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec------
Q 001363 822 -GGVISLYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------ 883 (1092)
Q Consensus 822 -dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~------ 883 (1092)
|+.|.+....+.....++.+. .+-.+.++++| ..+.++..+..|.|.+||+.+.+.+..+.
T Consensus 312 ~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~ 390 (792)
T KOG1963|consen 312 EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY 390 (792)
T ss_pred cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecc
Confidence 899999887666554444332 23457889999 67788888999999999998876554442
Q ss_pred -----cccCCeEEEEEcCCCCEEEEEe--------CCC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC
Q 001363 884 -----GHSKRVTGLVFSDALNILVSSG--------GDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 884 -----~h~~~V~~l~~spdg~~l~s~s--------~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
.+.-.+++++.+-.|.+++|.- .|| .+++|-...........-.....|.. ..+..+.+++..
T Consensus 391 ~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~r 468 (792)
T KOG1963|consen 391 SDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTR 468 (792)
T ss_pred cCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcc
Confidence 1334588889999999999873 233 47889887654332221122222221 123333444433
Q ss_pred C-EEEE-EeCCcEEEEEcCCce----------eeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC-CceEEe
Q 001363 949 T-RFLL-VHETHLAIYEAEELT----------CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCR 1015 (1092)
Q Consensus 949 ~-~la~-~~d~~i~lwd~~~~~----------~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~-~~~~~~ 1015 (1092)
. ..++ +.||.+++|-....+ |... -.-|..++++++||.||+.|+ ++.|++|.+||..+ .++.+.
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~ 546 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-GSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCT 546 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcCccceEEeee-eccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhcc
Confidence 3 5555 689999999884322 2111 123689999999999997666 55788999999999 555555
Q ss_pred eccccccCCCCccccccceEE-EECCCCCCEEEEEeCCCcEEEEecCCCCCcc
Q 001363 1016 ILSTAYLRPTTSCLHVYPHAI-AAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus 1016 ~~~~~~~~~~~~~~~v~~~~~-~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
.....+. +...+. +-.+ ....+.....+.+.+|++......|
T Consensus 547 ~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 547 EGSRNWP--------IAELLFTAQTQ--NDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ccccccc--------hHhHhhhcccc--cccceeeccCceEehHhhhhhheec
Confidence 5422211 111111 1122 2345555677899999999888888
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.1e-20 Score=203.03 Aligned_cols=276 Identities=12% Similarity=0.165 Sum_probs=231.6
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC-CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..|...-+.++|.|+|++|++++.||.|++|+.... +... .+..+...|.+++... . .|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~s--~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACYS--N--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeecc--c--ceEEeeccceEEEee
Confidence 368899999999999999999999999999998876 3222 3333777788877643 4 699999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
...++.-..+....-+++.+++ +.+|.+++.|+.|-.|++-+.........+.+|..+|.++.|+|++++|++...
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 9988876666667788999999 557789999999999999999999999999999999999999999999999876
Q ss_pred CCceeEEEEeCCCCeEEEEEeecccc-----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
+|.|++||+.++.+..++.+.... ...+..++|+|++..++..+.|+.|.+|+..+......+........+.
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 777999999999888777654311 2346778999999999999999999999999999988887665555588
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccC
Q 001363 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 685 (1092)
.+.|+|+|+|||+++.+|.|.|||.++.. .......|.+++|.|+...+..-...
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITLITAL 291 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEEEeec
Confidence 99999999999999999999999999721 14456678999999887776543333
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.2e-23 Score=213.27 Aligned_cols=287 Identities=13% Similarity=0.175 Sum_probs=228.9
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.|.+-|.++++|...+ .+.+|+. |-|+|||+....... +....-......-|.++.++|||+.|
T Consensus 417 ~HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred ccCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEecCCCceE
Confidence 5776888999998887 4788876 789999997542111 00000022345789999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
++|+.-.++.|||+.....- ...++..-.-...+++.+||.+ +.++|..||.|.|||+.+...++.|+||.+.+.||
T Consensus 481 ivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred EeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence 99999999999999875422 1113333344678899999999 88999999999999999999999999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
.+ +.||..|.+|+-|.+||.||++.+........ ...|.++.++|.+.++++|-. ++.+.+.... +.....+
T Consensus 558 di--s~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp~kyql 629 (705)
T KOG0639|consen 558 DI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KPEKYQL 629 (705)
T ss_pred Ee--cCCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecC-Cccceee
Confidence 98 55889999999999999999998776655443 347889999999999999876 4446665543 3333444
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
.-|. ..|.++.|.+.|+++++.+.|+.+..|...-|..+...... +.|.++..|.|.+++++|+.|....+|.+
T Consensus 630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4444 89999999999999999999999999999988877766543 46899999999999999999988888864
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=4.4e-23 Score=211.16 Aligned_cols=283 Identities=12% Similarity=0.171 Sum_probs=224.1
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001363 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s 811 (1092)
.|..-|.++++|...+.+++++. |.|+|||+..... ...+...+. ....+-|+++.+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-------------------k~PvsqLdc--l~rdnyiRSckL~ 474 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-------------------KSPVSQLDC--LNRDNYIRSCKLL 474 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-------------------CCccccccc--cCcccceeeeEec
Confidence 37888899999999998877765 5899999865311 011111111 1256778999999
Q ss_pred cCCCEEEEEeC-CeEEEEEcCCceee--EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCC
Q 001363 812 KNDAYLFSASG-GVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 888 (1092)
Q Consensus 812 ~dg~~l~~~sd-g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 888 (1092)
|||+.|++|+. .++.|||+...... ..+........+++.+| |.++.++++.||.|.|||+.+...+..|+||.+.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG 553 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 553 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence 99999999986 78999999765432 33443445678899999 8999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCc
Q 001363 889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEEL 967 (1092)
Q Consensus 889 V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~ 967 (1092)
+.||.+++||..|.||+-|.+||-||+..+.... ... +...|.++..+|.+.+|++| .++.+.|......
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlq-----qhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp 624 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-----QHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP 624 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhh-----hhh----hhhhheecccCCCccceeeecccCcEEEEecCCc
Confidence 9999999999999999999999999999865222 111 11368999999999999997 5567888877654
Q ss_pred eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEE
Q 001363 968 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1047 (1092)
Q Consensus 968 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~ 1047 (1092)
+.-. +.-|...|.++.|++.|+++++.+.|.-+-.|...-|..+.... -.+.|.++.++++ ..+++
T Consensus 625 ~kyq--lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVlsCDIS~d---dkyIV 690 (705)
T KOG0639|consen 625 EKYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVLSCDISFD---DKYIV 690 (705)
T ss_pred ccee--ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcceeeeeccC---ceEEE
Confidence 4433 44589999999999999999999999999999999987764433 1455676666665 58999
Q ss_pred EEeCCCcEEEEec
Q 001363 1048 VGLTNGEVYVIEP 1060 (1092)
Q Consensus 1048 ~~~~dg~v~~w~~ 1060 (1092)
||+.|..-.||.+
T Consensus 691 TGSGdkkATVYeV 703 (705)
T KOG0639|consen 691 TGSGDKKATVYEV 703 (705)
T ss_pred ecCCCcceEEEEE
Confidence 9999998888876
No 127
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.1e-23 Score=192.78 Aligned_cols=256 Identities=16% Similarity=0.219 Sum_probs=205.7
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp- 406 (1092)
..-.+|.+-|..+...--|++ |||++.|++|+|+.+.++..... ...|.||+++|..++|..
T Consensus 5 ~idt~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahP 67 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHP 67 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeeccc
Confidence 344689999999999999984 89999999999999987654211 112899999999999987
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-c--eeEEEe
Q 001363 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S--RTYSFE 482 (1092)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~--~~~~~~ 482 (1092)
-|.+||+++.||.|.||.-++| ...+..+...|...|++++|.|.+-.+.|++++.||.|.|.+.++. . ......
T Consensus 68 k~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~ 146 (299)
T KOG1332|consen 68 KFGTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF 146 (299)
T ss_pred ccCcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence 8999999999999999999988 4445556788999999999999988889999999999999987654 1 224456
Q ss_pred cCCcCeEEEeecccCC-c-----------cEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEccCC----CEE
Q 001363 483 GHGAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANG----RRL 544 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~-~-----------~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~dg----~~l 544 (1092)
.|.-.|++++|.|..- | +.|++|+.|..|+||+.+..+-. ..+..|...|+.++|.|.- .++
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceee
Confidence 7999999999987521 1 57999999999999999876432 3478899999999999964 468
Q ss_pred EEEecCCCCceeEEEEeCCCC--eEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001363 545 FSCGTSKEGESFLVEWNESEG--AIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~--~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++|+. ++.+.||-.... .... .+.... ..+..+.|++.|+.|++++.|+.|.+|.-.
T Consensus 227 AS~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 227 ASCSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 88876 667999976521 1111 222222 689999999999999999999999999754
No 128
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=5.1e-23 Score=210.31 Aligned_cols=263 Identities=17% Similarity=0.256 Sum_probs=210.1
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CCC
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS 409 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~ 409 (1092)
--|.++|+.+.+-|....++|+++..+.|.|||..+-.-..... +.| .....|.||...=..++|++ ..-
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------~~~---~Pdl~L~gH~~eg~glsWn~~~~g 191 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------GEC---RPDLRLKGHEKEGYGLSWNRQQEG 191 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------ccC---CCceEEEeecccccccccccccce
Confidence 46888999999999998899999999999999987643222100 000 11224889998888899999 456
Q ss_pred EEEEEeCCCEEEEEEccCCCc----ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC--CCceeEEEec
Q 001363 410 LLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFEG 483 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--~~~~~~~~~~ 483 (1092)
+|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.+...+
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 889999999999999985433 5556678899999999999998776 79999999999999999 5666778899
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEE-EEEecCCCCceeEEEEe
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l-~~~~~~~~~~~~i~iwd 561 (1092)
|.++|++++|+|.. +.+||+|+.|++|.+||+++... ...+..|...|..+.|+|....+ ++++. ++.+.+||
T Consensus 271 h~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl~vWD 345 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRLNVWD 345 (422)
T ss_pred cCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcEEEEe
Confidence 99999999999874 68999999999999999998664 56889999999999999977654 44443 77799999
Q ss_pred CCCCeEE-----------EEEeeccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECC
Q 001363 562 ESEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN 608 (1092)
Q Consensus 562 ~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~ 608 (1092)
+..-... ..+-.|..|...|..+.|+|+..++++ .++|+.+.||.+.
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 8642221 122233444589999999999887655 7899999999975
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=5.3e-21 Score=209.93 Aligned_cols=289 Identities=11% Similarity=0.054 Sum_probs=212.3
Q ss_pred EEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEccC
Q 001363 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG 427 (1092)
Q Consensus 349 llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~~ 427 (1092)
++++++.|+.|++||+.+++.+.. +..+ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788999999999999999887654 3333 346789999999987 5667889999999998
Q ss_pred CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEec
Q 001363 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507 (1092)
Q Consensus 428 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~ 507 (1092)
++... .+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++++ +++.++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEec
Confidence 86544 3433433 567899999984 345566789999999999888877753 3345677785 47788888887
Q ss_pred CC-eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceE
Q 001363 508 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS 582 (1092)
Q Consensus 508 dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~ 582 (1092)
++ .+.+||..+......... ......++|+|+|+++++++. .++.|++||..+++.+..+..+.. ......
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 467789877655443322 234567899999998876542 256799999999988776653210 011235
Q ss_pred EEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCceeeec
Q 001363 583 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 583 ~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~ 660 (1092)
.+.|+|+++++++ .+.++.+.+||..+++....+... ..+.+++|+|+|++|+++ ..++.|.+||..+++.+..+
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 6889999998655 455678999999998887665432 247899999999999886 45899999999999888877
Q ss_pred ccccCceeeeeec
Q 001363 661 GVLSDNLRKLSVN 673 (1092)
Q Consensus 661 ~~~~~~v~~~~~~ 673 (1092)
... ...+.++++
T Consensus 288 ~~~-~~~~~~~~~ 299 (300)
T TIGR03866 288 KVG-RLPWGVVVR 299 (300)
T ss_pred Ecc-cccceeEeC
Confidence 653 333555544
No 130
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=9.3e-21 Score=207.96 Aligned_cols=279 Identities=18% Similarity=0.237 Sum_probs=202.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCceeeecccccCceee
Q 001363 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1092)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 669 (1092)
..+++++.|+.+++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||..+++....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence 467888999999999999999888887543 35789999999876 556678899999877542211110
Q ss_pred eeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEE
Q 001363 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1092)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 749 (1092)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEE
Q 001363 750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL 827 (1092)
Q Consensus 750 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~i 827 (1092)
....+..++++|+++.+++++ ++.+++
T Consensus 71 ---------------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 71 ---------------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ---------------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence 001123456777777665543 578999
Q ss_pred EEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE-e
Q 001363 828 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G 905 (1092)
Q Consensus 828 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~-s 905 (1092)
||+.+.+.+..+.. ...+.+++|+| ++.+++++..++ .+.+||..+++....+.. ...+.+++|+|++++|+.+ .
T Consensus 100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence 99988877776653 33467899999 899999888775 567789998877665542 3346789999999988544 4
Q ss_pred CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE--EeCCcEEEEEcCCceeeeeeccCCCCCEEE
Q 001363 906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ 983 (1092)
Q Consensus 906 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~ 983 (1092)
.++.|++||+.+++............+.. ......++|+|+++++++ +.++.+.+||..+++.+.... +...+.+
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~ 253 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ 253 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence 69999999999876433211111110100 112457899999998655 456789999999888776543 3457899
Q ss_pred EEEecCCCEEEEE-ECCCcEEEEEcCCCceEEeec
Q 001363 984 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 984 l~fs~dg~~l~t~-~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
++|+|||++|+++ +.+|.|.+||+.+++.+.++.
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9999999999876 468999999999999988886
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.2e-22 Score=203.73 Aligned_cols=289 Identities=15% Similarity=0.227 Sum_probs=224.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC
Q 001363 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 654 (1092)
.+.|+++.|+|....+++++.|++++||.+... ..++.+... ..+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 368999999999999999999999999987643 344554443 34688999999998 8888888888888988754
Q ss_pred ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCcccc
Q 001363 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 734 (1092)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~ 734 (1092)
+.....+
T Consensus 291 k~~k~~~------------------------------------------------------------------------- 297 (514)
T KOG2055|consen 291 KVTKLKP------------------------------------------------------------------------- 297 (514)
T ss_pred ccccccC-------------------------------------------------------------------------
Confidence 2211100
Q ss_pred ccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001363 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
..|. ....+....+||++
T Consensus 298 ---------------------------------------------------~~g~-----------e~~~~e~FeVShd~ 315 (514)
T KOG2055|consen 298 ---------------------------------------------------PYGV-----------EEKSMERFEVSHDS 315 (514)
T ss_pred ---------------------------------------------------CCCc-----------ccchhheeEecCCC
Confidence 0000 12344566778888
Q ss_pred CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC-CeEEE
Q 001363 815 AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGL 892 (1092)
Q Consensus 815 ~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l 892 (1092)
++|+..+ .|.|.+....+++.+..++ -.+.|..++|+. |++.|++.+.+|.|.+||+....++.++....+ .-+++
T Consensus 316 ~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~ 393 (514)
T KOG2055|consen 316 NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSL 393 (514)
T ss_pred CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeee
Confidence 8888877 5888888888888888887 567899999998 889999999999999999999999988874222 23568
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCce-eeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE---eCCcEEEEEcCCce
Q 001363 893 VFSDALNILVSSGGDAQIFVWDVDGWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELT 968 (1092)
Q Consensus 893 ~~spdg~~l~s~s~Dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~---~d~~i~lwd~~~~~ 968 (1092)
+.|++|.+||+||..|.|-|||.++--. ...+++.....-. ..|+++.|++|+.+||.+ ..+.+++-.+.+..
T Consensus 394 ~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 394 CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 8889999999999999999999765211 1123344433333 379999999999999984 56789999999888
Q ss_pred eeeeeccCC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 969 CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 969 ~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
....|.... -+.|+|++|||.|.+|+.|..+|.|.+|.+.
T Consensus 471 VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 471 VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 877765443 5789999999999999999999999999874
No 132
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.5e-22 Score=204.55 Aligned_cols=288 Identities=14% Similarity=0.215 Sum_probs=233.2
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC-EEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLG 412 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~la 412 (1092)
.+.|++|.|+|.-. +|.+|+.|++++||.++........+ +.-...+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence 35999999999998 89999999999999987543222111 222457999999999999 889
Q ss_pred EEeCCCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
+++....++.||+.+.+..+ +..+.++. ..+.....|++++ +|+..|..|.|.+-...+++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999876543 22344554 3577888999999 89999999999999999999999987 56789999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC------
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------ 564 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~------ 564 (1092)
+|+ .+++.|++++.+|.|.+||++...+...+...+. .-+++|.+++|.++++|+. .|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 995 5778999999999999999999988887765554 4578899999999999976 67799999653
Q ss_pred CeEEEEEeeccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEeCC-CCCCCCceEEEccCCCEEEEEe
Q 001363 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
.+++..+.... ..|..+.|+++.+.|+.+| .+..+++-++.+......++.. .....|+|++|+|.+.++|+|.
T Consensus 425 PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 425 PKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred CCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 34455555444 6899999999999988877 5678999998887666655443 3345689999999999999999
Q ss_pred CCCeEEEEECC
Q 001363 642 NENRIKILETP 652 (1092)
Q Consensus 642 ~dg~i~iw~~~ 652 (1092)
.+|.+.+|.+.
T Consensus 502 e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 EAGRVHLFKLH 512 (514)
T ss_pred CCCceeeEeec
Confidence 99999999864
No 133
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3e-22 Score=204.74 Aligned_cols=293 Identities=15% Similarity=0.207 Sum_probs=230.7
Q ss_pred EEEEEcCCC-cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC-CCcEEEEEECCCCCEEEEEe-CCCEEEEEEc
Q 001363 349 LLLVGTNVG-DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 425 (1092)
Q Consensus 349 llasg~~dg-~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h-~~~V~~l~~spdg~~las~~-~d~~i~iwd~ 425 (1092)
++.+++.|. ++.+||+.+|....++ ++. ...-.++..- .+.|++++. ....+.+|.+
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~y-------------------kg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i 68 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQY-------------------KGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEI 68 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEe-------------------cCcccccchhhhhh-chhheeeecccCcccccccc
Confidence 344555554 5999999999876542 111 0010111110 246777774 3457999999
Q ss_pred cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEE
Q 001363 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505 (1092)
Q Consensus 426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~ 505 (1092)
.......+.. --.++|.+++-+|+|. +|+.|+..+.|++|.+.+|..+..+.+|-..|+++.| +.||.+|++|
T Consensus 69 ~k~~~~~q~~---v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTg 141 (476)
T KOG0646|consen 69 LKKDQVVQYI---VLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITG 141 (476)
T ss_pred Cchhhhhhhc---ccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEec
Confidence 8655444221 2456899999999998 7888879999999999999999999999999999999 5688999999
Q ss_pred ecCCeEEEEEcC---------CCCceEEecCCCCceEEEEEccC--CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001363 506 SVDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 506 ~~dg~i~vwd~~---------~~~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
+.||.|.+|++. +..+...+..|.-+|+.+...+. ..++++++. |.++++||+..|.++.++...
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp 217 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFP 217 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecC
Confidence 999999999763 33456678888889999888765 457888876 778999999999999888764
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------ceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001363 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----------------QLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
..+.+++.+|.+..+++|+.+|.|.+.++..- ..+..+.+|.....|+|++.+-||.+|+
T Consensus 218 ----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 218 ----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred ----CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 48999999999999999999999998876542 2334455555545899999999999999
Q ss_pred EEeCCCeEEEEECCCCceeeecccccCceeeeeecCCC
Q 001363 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 676 (1092)
+|+.||.+.|||..+.+.++++....++|+.+.+.|..
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 99999999999999999999988888999999987653
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=7.6e-22 Score=189.02 Aligned_cols=320 Identities=13% Similarity=0.198 Sum_probs=233.1
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CC
Q 001363 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg 408 (1092)
.+.|.+.|+.+...|...+++.+|+.||.|.|||++........-+ +-+ ..| .....--.+|.-.|..+.|-| |.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c--~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKC--IVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eee--eccccCCccceeeeeeeEEeeecC
Confidence 3568899999999997766899999999999999986542110000 000 001 112223567899999999999 77
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCC-cEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
-.+.+++-|.+++|||..+-+... .+ ...+.|.+-++||-.. .-++++|..|-.|++-|+.+|..-+++.||.+.
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG 190 (397)
T ss_pred ceeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence 788899999999999999864332 33 2456788888888543 326788888899999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
|.++.|+|..+ -.|++|+.||.|++||++.. .+..++.|..+++.
T Consensus 191 vlaV~Wsp~~e-~vLatgsaDg~irlWDiRra----------------------------------sgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 191 VLAVEWSPSSE-WVLATGSADGAIRLWDIRRA----------------------------------SGCFRVLDQHNTKR 235 (397)
T ss_pred eEEEEeccCce-eEEEecCCCceEEEEEeecc----------------------------------cceeEEeecccCcc
Confidence 99999998754 68999999999999998742 11234444444333
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC----CCCCCCceEEEccCCCEEEEEeCC
Q 001363 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----GGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
...++....|.+.|..++|+.++.++++++.|..+++|+..+|+....-..+ .....-..+. +.+...++.--.+
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~ 314 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPND 314 (397)
T ss_pred CccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecC
Confidence 3333333334589999999999999999999999999999988654322111 0000001122 3344556656667
Q ss_pred CeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecc
Q 001363 644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 644 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~ 715 (1092)
+.+.++++-.+..+..+.+|...+.|.++. |+-+...++..|+.+..|-.
T Consensus 315 ~~lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 315 GSLALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CeEEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCccccccc
Confidence 999999999999999999998888888775 56667788888888888874
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.8e-22 Score=192.31 Aligned_cols=300 Identities=15% Similarity=0.191 Sum_probs=223.0
Q ss_pred CCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001363 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
..|..+..+|.... -.|+.||+.|. +||+|..||.|.|||..|-..-+. +.+|..+|+
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~ 69 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT 69 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence 45666667776443 78999999998 799999999999999998765443 889999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+++||+||+.|+++|.|..|.+||+..|.+++++ ....+|+.+.|.|-.....+++ -.+..-.+-++..++....
T Consensus 70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h~~L 144 (405)
T KOG1273|consen 70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKHSVL 144 (405)
T ss_pred EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEE-EecCCcEEEEecCCceeec
Confidence 9999999999999999999999999999877643 2567899999999877634443 3344455555544322111
Q ss_pred EecCCcCeEEE--eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 481 FEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 481 ~~~~~~~v~~i--~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
-....+..+.. +-..++.|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|++++..+. +..|
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvI 220 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVI 220 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceE
Confidence 11111111111 11235577899999999999999999998888776665 68999999999999999876 7789
Q ss_pred EEEeCCCC-------eE--EEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 558 VEWNESEG-------AI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 558 ~iwd~~~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+.|+++.- +. .+.++..- ..-.-.+++|+.+|.++++++ ....++||....|.+++.+.+..+ .....
T Consensus 221 R~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~D 298 (405)
T KOG1273|consen 221 RTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLD 298 (405)
T ss_pred EEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheee
Confidence 99987621 11 11111111 123446789999999998876 456799999999999999987654 35678
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
+.|+|-...+++. ..|.+++|.....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeecc
Confidence 8999988777777 6799999987643
No 136
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.3e-21 Score=188.16 Aligned_cols=270 Identities=14% Similarity=0.110 Sum_probs=211.1
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
....|+++.|+|.+..|++++.||.+++||+...+... . -.|..++.+++|.++.+ +++|+.||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~---~-~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL---K-FKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh---h-eecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 57899999999999999999999999999999875443 2 25899999999998765 99999999999999999
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
+.... +..|..+|.++...+.. ..+++|+.|++|++||.+.......+...+ .|.++.. .|..|++++. +
T Consensus 85 ~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----D 154 (323)
T ss_pred Cccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----C
Confidence 87654 44699999999987544 479999999999999998754444444333 6665554 5677888765 5
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeCCCC-------CC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP 623 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 623 (1092)
..+.+||+++........... -...+.++++.|++.-+++++-||.|.+=.++.. +....+..|.. .-
T Consensus 155 r~v~iyDLRn~~~~~q~reS~-lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESS-LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhcccc-ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 669999998766543222111 1357899999999888999999999988655544 23333443321 12
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccccc
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 682 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (1092)
+|++++|+|-...|++|+.||.|.+||..+.+.+..+......|..++|+.++..++++
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 58899999999999999999999999999999999998888889999998665555443
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.3e-22 Score=191.08 Aligned_cols=282 Identities=15% Similarity=0.211 Sum_probs=215.1
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|++.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999875443 5789999999999999999 8999999999999999999999
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC----ceEEEEEccCCCEEEEEecCCCCc
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
+.+. ...+|..+.|+|......+++--. ..-.+-++........-....+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~-~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIME-ESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEec-CCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9987 788999999999877655555433 3344455554222221111111 1223468899999999975 7
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE---------EEEeCCCCCCCC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL---------TTIDAGGGLPEN 625 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v 625 (1092)
|.+.++|..+-+++..++-.. ...|..+.++..|..++.-+.|..||.|+...-... +.+..--....-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 779999999999998887654 467899999999999999999999999987631110 111100011234
Q ss_pred ceEEEccCCCEEEEEeC-CCeEEEEECCCCceeeeccccc-CceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001363 626 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
.+++|+.+|.+++.++. ...++||....|..++.+.|.. .....+.+.|.... +++
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~----------------------i~s 310 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI----------------------IAS 310 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee----------------------eee
Confidence 68999999999988875 5789999999999999999887 56667777754433 222
Q ss_pred eccccccceeccc
Q 001363 704 VEAENKSEVEKPL 716 (1092)
Q Consensus 704 ~~~d~~i~lw~~~ 716 (1092)
- ..|.+.+|...
T Consensus 311 i-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 311 I-ASGVVYIWAVV 322 (405)
T ss_pred c-cCCceEEEEee
Confidence 2 55889999844
No 138
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.8e-21 Score=198.28 Aligned_cols=305 Identities=17% Similarity=0.195 Sum_probs=229.1
Q ss_pred ceeeecccCCCCceEEeecCCCc-eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
......+-|.++|++++|+|... .++|+|+..|.|-+||+.+.+...... .++..|..+|.++.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~ 241 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLK 241 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceE
Confidence 33455667888999999999876 799999999999999996544333211 12778999999999
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-eEEE
Q 001363 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSF 481 (1092)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~ 481 (1092)
|+| +-..+++.|.||+|++-|++++.. .....+..-...+..+.|+.+.. .++.+..=|...+||.+++.. ...+
T Consensus 242 F~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~ 318 (498)
T KOG4328|consen 242 FSPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENL 318 (498)
T ss_pred ecCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhh
Confidence 999 567888999999999999997642 22223333445678889998888 677788778999999998765 5667
Q ss_pred ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce----EEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
.-|...|.+++++|-.. .++++++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. +..|
T Consensus 319 ~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~I 393 (498)
T KOG4328|consen 319 RLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEI 393 (498)
T ss_pred hhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCce
Confidence 77999999999998754 79999999999999999865433 345567889999999998888888765 6679
Q ss_pred EEEeCC----CCeEEEEEeeccccCC--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 558 VEWNES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 558 ~iwd~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++||.. .-....++.....+.. ......|.|+..++++|-.-..|-|+|-..++.+..+..+.......-..|+
T Consensus 394 Rv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H 473 (498)
T KOG4328|consen 394 RVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH 473 (498)
T ss_pred EEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence 999983 2233333332221112 2344679999999999999999999999999988776554332222345799
Q ss_pred cCCC-EEEEEeCCCeEEEEECC
Q 001363 632 KNGT-LLAVIANENRIKILETP 652 (1092)
Q Consensus 632 ~~~~-~l~~~~~dg~i~iw~~~ 652 (1092)
|-+. +++.++..|.|+||..+
T Consensus 474 P~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 474 PMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccceeccCCccceEEEEecC
Confidence 9877 44445557889988654
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=4.2e-21 Score=183.97 Aligned_cols=305 Identities=15% Similarity=0.181 Sum_probs=217.4
Q ss_pred cccccEEEEEEec-CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001363 732 VKANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 732 ~~~~~i~~l~~s~-~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
.|.+.|+++.+.+ .|+++++++.||.+.+||++............ ...|+... -...+|...|..+.|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~----------k~~c~v~~-~h~~~Hky~iss~~W 109 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA----------KHKCIVAK-QHENGHKYAISSAIW 109 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee----------heeeeccc-cCCccceeeeeeeEE
Confidence 3889999999877 68999999999999999998654211111110 01111111 112258899999999
Q ss_pred ecCC-CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC--CCCEEEEEeCCCcEEEEEcCCceeeEeecccc
Q 001363 811 SKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHS 886 (1092)
Q Consensus 811 s~dg-~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 886 (1092)
-|-. ..+.+++ |.++++||..+.+....|. -.+.|.+-++||- ...++|+|..|-.|++.|+.+|.....+.||.
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 8844 4455555 8999999999998888876 5567777777772 13488999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCc--eee-----eeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCC
Q 001363 887 KRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWG--IQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 957 (1092)
Q Consensus 887 ~~V~~l~~spdg~~-l~s~s~Dg~I~iwd~~~~~--~~~-----~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~ 957 (1092)
+.|.++.|||...+ |+||+.||.|++||+..-. ... .+..+..+....+.+.+..++|+.||.++++ +.|.
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 99999999998765 7899999999999997531 000 0111111112223358999999999999998 8999
Q ss_pred cEEEEEcCCceeeeeecc--CCCC---CEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCcccccc
Q 001363 958 HLAIYEAEELTCLKQWFP--ISSV---PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1032 (1092)
Q Consensus 958 ~i~lwd~~~~~~~~~~~~--~h~~---~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1032 (1092)
.+++|+..+|+....-+. .|+. .-..+. +.+...++---.|+++.++++-.|..+.++. .|...+
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~--------~h~k~i- 338 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS--------THLKRI- 338 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee--------ccccee-
Confidence 999999988764322111 1211 111122 4444455555567899999999999988887 222222
Q ss_pred ceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1033 PHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1033 ~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
.|.++.| +=+...+|..|+.+..|-.
T Consensus 339 -~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 339 -NCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred -eEEeecC-chhhhhccccCCccccccc
Confidence 3667777 4577999999999999987
No 140
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=9.2e-21 Score=200.44 Aligned_cols=450 Identities=14% Similarity=0.140 Sum_probs=289.9
Q ss_pred ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce
Q 001363 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 522 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 522 (1092)
.|..++|-|||.+++++. +..+.+||...|..++++++|.+.|+++++ +.||+.+++|+.|+.|.+|.-.....
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEecccccce-
Confidence 799999999999744443 347999999999999999999999999999 55889999999999999996543222
Q ss_pred EEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcE
Q 001363 523 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1092)
Q Consensus 523 ~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 602 (1092)
.--.|...|.++.|+|-...|++|+-+. .-+|........+ .+. ...+.+++|..||++++.|-.+|+|
T Consensus 88 -LkYSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K-~ks----s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 88 -LKYSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSK-HKS----SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred -eeeccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHh-hhh----heeEEEeeecCCCcEEEEeccCceE
Confidence 2234777999999999999999998542 5678765443322 111 2468899999999999999999999
Q ss_pred EEEECCCCceEEEEeCCCCCCCCceEEEccCC-----CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCc
Q 001363 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677 (1092)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 677 (1092)
.+-+......+..-...+...+|.+++|+|.. ..+++.....++.++.+.. +.+..-+...-.-.|+.+
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisY----- 230 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISY----- 230 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhhee-----
Confidence 99875444444433444556789999999953 4677777777777777653 233222222222223333
Q ss_pred cccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCe
Q 001363 678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 757 (1092)
Q Consensus 678 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 757 (1092)
-++|.+++.|+.|+.+.+|..+.-..+ . . ......|..++..|+++.++.|..||+
T Consensus 231 -----------------f~NGEy~LiGGsdk~L~~fTR~GvrLG---T--v--g~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 231 -----------------FTNGEYILLGGSDKQLSLFTRDGVRLG---T--V--GEQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred -----------------ccCCcEEEEccCCCceEEEeecCeEEe---e--c--cccceeEEEEEEccCCceEEEEEccCe
Confidence 378999999999999999874421111 0 0 114568999999999999999999999
Q ss_pred eEEEeecCCCcCcC---------------------cc---------------------cccccCCccccCCCCCceeeec
Q 001363 758 HLMWRWPRNDLTLS---------------------TE---------------------ATTKVPPRLYQPRHGPQFMVND 795 (1092)
Q Consensus 758 i~~w~~~~~~~~~~---------------------~~---------------------~~~~~~~~~~~~~~g~~~~~~~ 795 (1092)
+-.|++-....+.- +. .+....+.+|...++. .....
T Consensus 287 iACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~-~~~mh 365 (1081)
T KOG1538|consen 287 IACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSED-LSDMH 365 (1081)
T ss_pred eehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccc-cccch
Confidence 99998765432000 00 0000112222222211 00000
Q ss_pred CCCCC-CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001363 796 TTDSN-SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 866 (1092)
Q Consensus 796 l~~~~-~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg 866 (1092)
.+.+. -.....|--+--.++.++.+.+..+..+|...-+. ++-++... .|.+..-|+.|..||
T Consensus 366 Y~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~G--------GP~gREgL~vGlknG 437 (1081)
T KOG1538|consen 366 YRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIG--------GPPGREGLLVGLKNG 437 (1081)
T ss_pred hHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhc--------CCCCcceeEEEecCC
Confidence 00000 00000111111134455555566777777653211 11111111 122566788899998
Q ss_pred cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEcc
Q 001363 867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 946 (1092)
Q Consensus 867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 946 (1092)
.|.-.=+++.-++-... ....|.|+..+...+.||+..+.++..++|+.+++. .++.+ .+.+++|+.
T Consensus 438 qV~kiF~dN~~PiLl~~-~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~wNT 504 (1081)
T KOG1538|consen 438 QVLKIFVDNLFPILLLK-QATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVAWNT 504 (1081)
T ss_pred cEEEEEecCCchhheec-ccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEEeec
Confidence 77544455443333333 456799999999999999999999999999999763 22332 477899988
Q ss_pred CCCEEEE-EeCCcEEE
Q 001363 947 DQTRFLL-VHETHLAI 961 (1092)
Q Consensus 947 dg~~la~-~~d~~i~l 961 (1092)
...-+.+ +..|.+.|
T Consensus 505 ~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 505 QCEDMLCFTGGGYLNV 520 (1081)
T ss_pred cccceEEEecCCceEE
Confidence 7655544 55565544
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=199.89 Aligned_cols=225 Identities=16% Similarity=0.177 Sum_probs=190.8
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC--
Q 001363 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-- 473 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-- 473 (1092)
.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+. .+.+|-..|+|+.|+.||. +++|||.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 3689999999999999999999999999999998877 5679999999999999999 89999999999999753
Q ss_pred -------CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001363 474 -------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 474 -------~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
+-++++.|..|.-+|+++...+.+-..+++|+|.|.++++||+..+.....+..+ ..+.+++.+|-++.+++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence 3467889999999999999877766689999999999999999998777766544 47899999999999999
Q ss_pred EecCCCCceeEEEEeCCC----------------CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001363 547 CGTSKEGESFLVEWNESE----------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
|+. ++.|.+.++.. +..+..+.||. ....|+|++++-||..|++|+.||.|+|||+.+.
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~-~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE-NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeecccc-CCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 976 55677665432 23456677777 1138999999999999999999999999999999
Q ss_pred ceEEEEeCCCCCCCCceEEEccC
Q 001363 611 QLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
++++++... ..+|+.+.+.|-
T Consensus 310 Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 310 QCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHHhhh--ccccceeEeecc
Confidence 999888732 345888888663
No 142
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=2.2e-21 Score=198.39 Aligned_cols=253 Identities=19% Similarity=0.311 Sum_probs=202.5
Q ss_pred ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCccc-------ceEEEcccccceeEEEEecCCCcEEEEEEeC
Q 001363 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDAR-------QQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~~-------~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~ 463 (1092)
...|.+.|+.+.+-|. ...+|+.+..+.|.|||...-.... .-..+.+|...-..++|++.... .|++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 4459999999999995 4566777888999999997543222 23368899998888999998766 7999999
Q ss_pred CCcEEEEECCCCc-------eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC--CCCceEEecCCCCceEE
Q 001363 464 DKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTR 534 (1092)
Q Consensus 464 d~~i~vwd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~ 534 (1092)
|++|++||+.... ....+.+|...|..++|++... .++.+++.|+.+.|||.+ +.+.......|..++.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999987543 2467789999999999998754 689999999999999999 55566678889999999
Q ss_pred EEEccCCCE-EEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Q 001363 535 MAYSANGRR-LFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 535 ~~~s~dg~~-l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
++|+|-+.+ ||+++. +++|.+||+++. +.+.++.+|. ..|..+.|+|.. ..+++++.|+.+.+||+..-.
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 999996655 555554 777999999865 4567788877 999999999986 556778899999999987522
Q ss_pred eE------------EEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCC
Q 001363 612 LL------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE 653 (1092)
Q Consensus 612 ~~------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~ 653 (1092)
.. ..+...++...|..+.|+|+.. .++++++|+.+.||....
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 21 2244556677899999999766 567788999999999774
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.3e-21 Score=203.29 Aligned_cols=322 Identities=12% Similarity=0.166 Sum_probs=245.1
Q ss_pred cccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001363 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
....+|..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++++..+ .+
T Consensus 384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~--------------------d~ 442 (733)
T KOG0650|consen 384 DLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQF--------------------DS 442 (733)
T ss_pred hcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEee--------------------cc
Confidence 345567788899999999999999999998 699999999999999999999986432 35
Q ss_pred cEEEEEECCCCC--EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEE----EeCCCcEEEEE
Q 001363 398 SVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT----CGDDKTIKVWD 471 (1092)
Q Consensus 398 ~V~~l~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s----~~~d~~i~vwd 471 (1092)
.|.|++|+|.+. .||++-... +.|-+..-|..+... .+ .. .|++ ...|+.+..|.
T Consensus 443 ~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~-----~t-----------~e--ll~~~~~~~~p~~~~~~W~ 503 (733)
T KOG0650|consen 443 EIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVG-----PT-----------KE--LLASAPNESEPDAAVVTWS 503 (733)
T ss_pred eeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhc-----ch-----------hh--hhhcCCCccCCcccceeec
Confidence 899999999664 455554444 666666555322210 00 00 1221 12355778886
Q ss_pred CCCC----ceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001363 472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 472 ~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1092)
-... .-++..-.|...|..+.|+. .|.+|++...+ ..|.|.++........+....+.+.++.|+|...+|
T Consensus 504 ~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~l 581 (733)
T KOG0650|consen 504 RASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYL 581 (733)
T ss_pred hhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceE
Confidence 4421 12344556999999999965 56799988664 458899998877777777777889999999999999
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeCCCCCC
Q 001363 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLP 623 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~ 623 (1092)
++++ ...|++||+..+++++.+.... ..|..++.+|.|..|+.|+.|+.+..+|+.-. ++.+++..|. .
T Consensus 582 fVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~--~ 651 (733)
T KOG0650|consen 582 FVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE--K 651 (733)
T ss_pred EEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--h
Confidence 8887 4569999999988887776655 68999999999999999999999999999854 4556666554 4
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECC------CC---ceeeecccccCc----eeeeeecCCCccccccccCCceee
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGSVSV 690 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~------~~---~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~ 690 (1092)
.+++|+|++.-.++++|+.||++.|+... .+ -++..+++|... |....|+
T Consensus 652 avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH----------------- 714 (733)
T KOG0650|consen 652 AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH----------------- 714 (733)
T ss_pred hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc-----------------
Confidence 68999999999999999999999998532 11 345566777655 5555565
Q ss_pred cCCCCCCCccceeecccccccee
Q 001363 691 NEDPKEDVKPEISVEAENKSEVE 713 (1092)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~lw 713 (1092)
|...++++++.||+|++|
T Consensus 715 -----P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 -----PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred -----CCCceEEecCCCceEEee
Confidence 667889999999999998
No 144
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=7e-20 Score=193.86 Aligned_cols=273 Identities=13% Similarity=0.147 Sum_probs=203.0
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.|..++|-|||..++..++ ..+.|||++.|..+.+ +++|.+.|.|+|||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 8999999999987666544 6899999999998876 889999999999999999999999
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
.|..|.+|+..-...++ ..|...|.|+.|+|-.. .|+||+-. ..-+|..+..... .|...+..++.+.
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R~~~CsW 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSRIICCSW 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhheeEEEeee
Confidence 99999999976533232 26999999999999988 68888754 5678986554322 2333333333344
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCceEEEEEccCCC-----EEEEEecCCCCceeEEEEeCCCCeE
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~dg~-----~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
..||++++.|-.+|+|.+-+-. +++...+.. ...+|.+++|+|... .+++.-. ..++..+.+ +|+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence 7799999999999999987533 333333333 556899999999642 2333321 223443333 3444
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
+..-.... -...|+.+.++|.+++.|+.|+.+.+|-. .|-.+.++... ...|..++..|++++++.|+.||+|.
T Consensus 215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeee
Confidence 43322222 34678889999999999999999999975 45666666543 34699999999999999999999999
Q ss_pred EEECCC
Q 001363 648 ILETPE 653 (1092)
Q Consensus 648 iw~~~~ 653 (1092)
.|++..
T Consensus 289 CyNl~f 294 (1081)
T KOG1538|consen 289 CYNLIF 294 (1081)
T ss_pred hhhhHH
Confidence 998763
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7.6e-23 Score=219.25 Aligned_cols=236 Identities=17% Similarity=0.287 Sum_probs=212.9
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
...|...|.++..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 44588999999987789999999999999999987654444 5889999999999999988 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
++.++.++++.+|...+.++.|+| -+.+.++|+.|+.+++||.+...+...+.+|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 999999999999999999999976 4579999999999999999999999999999989999999999999999875
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
+..+.+||...|+....|.+|. +.+..+.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn 247 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN 247 (825)
T ss_pred --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence 6789999999999999999998 89999999999888889999999999999998888776654 4569999999
Q ss_pred cCCCEEEEEeCC
Q 001363 632 KNGTLLAVIANE 643 (1092)
Q Consensus 632 ~~~~~l~~~~~d 643 (1092)
|++..+++|...
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 999998888654
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.4e-21 Score=206.94 Aligned_cols=244 Identities=16% Similarity=0.233 Sum_probs=197.0
Q ss_pred EEEEec-CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC-CE
Q 001363 739 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AY 816 (1092)
Q Consensus 739 ~l~~s~-~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg-~~ 816 (1092)
.+.|.. +.++|++++.+|.|.+||+..... . .....+ .+|...+.++.|++.. .+
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------------------n--k~l~~f--~EH~Rs~~~ldfh~tep~i 148 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------------------N--KLLTVF--NEHERSANKLDFHSTEPNI 148 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCcccc-------------------c--hhhhHh--hhhccceeeeeeccCCccE
Confidence 344443 456688888899999999865210 0 000011 1499999999999864 67
Q ss_pred EEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc-eeeEeeccccCCeEEEEE
Q 001363 817 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVF 894 (1092)
Q Consensus 817 l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~ 894 (1092)
|++|+ ||.|++||+...+...++.+....|+.+.|+|..+..++++.+.|.+++||++.. ++...+.+|.++|.|+.|
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 77787 8999999999999999999988999999999988999999999999999999864 577888999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE----EeCCcEEEEEcCCceee
Q 001363 895 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCL 970 (1092)
Q Consensus 895 spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~----~~d~~i~lwd~~~~~~~ 970 (1092)
+|++.+|||||+|++|+|||..+++.....++.+. .++..+.|-|+..+.++ +.|..|+|||+...-..
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCccceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 99999999999999999999998775554455443 25899999999876554 36788999999987777
Q ss_pred eeeccCCCCCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCce
Q 001363 971 KQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~-dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
...+..|...++.++|.. |-..+.+++.||+|..-.++++..
T Consensus 302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 777888999999999965 556888999999987666655543
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.5e-20 Score=197.33 Aligned_cols=321 Identities=15% Similarity=0.231 Sum_probs=236.8
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC--EEEEEeCCCe
Q 001363 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIANENR 645 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~ 645 (1092)
-..+.||. +.|.++...|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.+++|+|.+. .||++..+.
T Consensus 393 ~lvyrGHt---g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 393 ALVYRGHT---GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eeeEeccC---CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecCc-
Confidence 34567777 999999999999999999999999999999999999998764 489999999665 455554443
Q ss_pred EEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceee----ccccccceeccccccCc
Q 001363 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV----EAENKSEVEKPLFARPS 721 (1092)
Q Consensus 646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~----~~d~~i~lw~~~~~~~~ 721 (1092)
+.|.+..-|..+..- +....++++ ..+..+-.|.-...+..
T Consensus 466 ~~ivnp~~G~~~e~~-----------------------------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~ 510 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVG-----------------------------------PTKELLASAPNESEPDAAVVTWSRASLDEL 510 (733)
T ss_pred eEEeCccccchhhhc-----------------------------------chhhhhhcCCCccCCcccceeechhhhhhh
Confidence 555554433111110 000111111 12234556654322211
Q ss_pred c---ccccccCCccccccEEEEEEecCCcEEEEeecC---CeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeec
Q 001363 722 E---CQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 795 (1092)
Q Consensus 722 ~---~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 795 (1092)
+ |..+ .|...|..+.|...|.+|++...+ ..+.|+++..... ...+.
T Consensus 511 ~~~v~~~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----------------------Q~PF~ 563 (733)
T KOG0650|consen 511 EKGVCIVI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----------------------QSPFR 563 (733)
T ss_pred ccceEEEE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc----------------------cCchh
Confidence 1 2222 278899999999999999988764 4566666544321 11111
Q ss_pred CCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC
Q 001363 796 TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 796 l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
-..+.|.++.|+|...++++++...|+|||+...+.+..+......|..++++| .|.-|+.|+.|+.+..+|+.-
T Consensus 564 ----kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 564 ----KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred ----hcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEccc
Confidence 156778999999999999999999999999999888888888888999999999 888889999999999999985
Q ss_pred c-eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCc--eeeeeeeecCCCCcCC-CCCceEEEEccCCC
Q 001363 876 S-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD--GWG--IQTCRSLQTPDGVMTL-APSETHIQFHKDQT 949 (1092)
Q Consensus 876 ~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~--~~~--~~~~~~~~~~~~~~~~-~~~v~~l~~s~dg~ 949 (1092)
+ ++.+++.-|...|++++|++.-.++++|+.||++.|+--. +.- -....+++.+.+|... ...|..+.|+|..-
T Consensus 639 sskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp 718 (733)
T KOG0650|consen 639 SSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP 718 (733)
T ss_pred CcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc
Confidence 4 6778899999999999999999999999999999988421 100 0112355666666542 13588889999999
Q ss_pred EEEE-EeCCcEEEE
Q 001363 950 RFLL-VHETHLAIY 962 (1092)
Q Consensus 950 ~la~-~~d~~i~lw 962 (1092)
+|.+ |.||+|++|
T Consensus 719 WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 719 WLFSAGADGTIRLF 732 (733)
T ss_pred eEEecCCCceEEee
Confidence 9998 789999998
No 148
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=6.7e-20 Score=184.29 Aligned_cols=308 Identities=15% Similarity=0.154 Sum_probs=219.0
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
.+..|+ +|..+.|.+++...+|||+.|..|+||.++.+..-.. .....-...|..|...|+++.|+|+|
T Consensus 9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 9 SWHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred EecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCc
Confidence 344565 9999999998865799999999999999976543321 00111223488999999999999999
Q ss_pred CEEEEEeCCCEEEEEEcc--------C-----CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 409 SLLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
..||+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|.++++||+..|
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence 999999999999999887 3 122233446789999999999999999 8999999999999999999
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-------------------CCC----Cce
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------------APG----LGC 532 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------------~~~----~~i 532 (1092)
..+..+..|...|..++|.|. ++++++-+.|...+.+.+.......... .|. .-.
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl--~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPL--NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eeEeeccccccccceeecchh--hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 999999999999999999654 4788888888766666554332211100 011 124
Q ss_pred EEEEEccCCCEEEEEecCCC-----CceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcC------------------
Q 001363 533 TRMAYSANGRRLFSCGTSKE-----GESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDT------------------ 588 (1092)
Q Consensus 533 ~~~~~s~dg~~l~~~~~~~~-----~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~------------------ 588 (1092)
..++|+|||..+++...--+ ..+..++++-.. .+....+.+.. .+...+.|+|
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccc
Confidence 56889999999886543111 023345554331 12222233322 3444444443
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCce
Q 001363 589 AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1092)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 656 (1092)
-+-.+++++ ...|++||.++..++.....- +...++.++|++||..+++.+.||...+...+..+.
T Consensus 311 yrlvfaiAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 311 YRLVFAIAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cceEEEEee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 222344444 467999999998887766432 345799999999999999999999988877765543
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.5e-20 Score=203.54 Aligned_cols=284 Identities=16% Similarity=0.259 Sum_probs=217.5
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCccc-ceEEEccc---ccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAH---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~-~~~~~~~h---~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
....+|+..++-..|+.++.. .++||.+....... .....+.. ...+..+.|..-..+ +|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence 456677888998889888665 47888776432211 11111111 123556778754444 8999999999999999
Q ss_pred CC---CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC-CCEEEEEe
Q 001363 473 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-GRRLFSCG 548 (1092)
Q Consensus 473 ~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~~~ 548 (1092)
.. .+.+..|..|...++++.|++... .+|++|+.||+|++||++......++......|+.+.|+|. +..++++.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 87 677788999999999999997643 69999999999999999999999988888889999999994 55666665
Q ss_pred cCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 549 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
. .|.+++||++.. ++...+..|. ++|.++.|+|++.+|++||.|++|+|||..+.+.......+. ..++.+
T Consensus 197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r 268 (839)
T KOG0269|consen 197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR 268 (839)
T ss_pred C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence 3 678999999854 4556677777 999999999999999999999999999998765443333332 356899
Q ss_pred EEEccCCC-EEEEEe--CCCeEEEEECCCC-ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001363 628 ICFNKNGT-LLAVIA--NENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 628 v~~s~~~~-~l~~~~--~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
|.|-|+.. +||+++ .|..|+|||+... -+...+..|...++.++|. +.|...+.+
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~---------------------~~d~~~l~s 327 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD---------------------SGDRINLWS 327 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc---------------------CCCceeeEe
Confidence 99999655 566554 3889999999866 4556777888888888887 345666778
Q ss_pred eccccccce
Q 001363 704 VEAENKSEV 712 (1092)
Q Consensus 704 ~~~d~~i~l 712 (1092)
++.|+++..
T Consensus 328 ~sKD~tv~q 336 (839)
T KOG0269|consen 328 CSKDGTVLQ 336 (839)
T ss_pred ecCccHHHH
Confidence 888887654
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=9.8e-20 Score=192.96 Aligned_cols=286 Identities=17% Similarity=0.152 Sum_probs=198.1
Q ss_pred cEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeE
Q 001363 747 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI 825 (1092)
Q Consensus 747 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i 825 (1092)
..|+.+..+|.|.+++.....+. ++... +.. ...|.+.|..+.+.|....|++++ |.++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~-lk~----~~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------LEERQ-LKK----PLAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------hhhhh-hcc----cccccceeEeeccCCCceeEEEccCCcee
Confidence 34666777899999986543221 11100 111 114999999999999767778776 7889
Q ss_pred EEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce--------------------e-----
Q 001363 826 SLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------V----- 878 (1092)
Q Consensus 826 ~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------~----- 878 (1092)
++||+++.+++.. +.+|.+.+.+++|.|.+...+++|+.||.|.|||+.-.. .
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999998877 889999999999999889999999999999999985321 0
Q ss_pred --eEeeccccCCeEE---EEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeee-eee--cCCCCcCCCCCceEEEEccCCC
Q 001363 879 --ISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCR-SLQ--TPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 879 --~~~l~~h~~~V~~---l~~spdg~~l~s~s~-Dg~I~iwd~~~~~~~~~~-~~~--~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
+....+|...|.+ +.+.-|...||++|. |+.|+|||+......... ... ....+..-.-.+.++.....|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 1222345566666 666678899999998 999999999875422211 111 1111111112466777777788
Q ss_pred EEEE-EeCCcEEEEEcCCceeeee-eccCC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCC
Q 001363 950 RFLL-VHETHLAIYEAEELTCLKQ-WFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus 950 ~la~-~~d~~i~lwd~~~~~~~~~-~~~~h--~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
+|.+ +.|+.|++|++.+...-.. .+.++ ...-..-..||||.+|++|+.|..+++|.+...+.--... ..
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~G-- 358 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----LG-- 358 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----hC--
Confidence 8877 7999999999975432211 12222 1111223468999999999999999999999876642222 11
Q ss_pred CccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1026 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
|.-+|. +++|.|.+-.-++++++|.++++|++.
T Consensus 359 -ht~eVt--~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 359 -HTREVT--TVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred -cceEEE--EEeeccccCCCceeeccCcceEEEecc
Confidence 334444 555555445678888999999999994
No 151
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2e-21 Score=208.47 Aligned_cols=239 Identities=11% Similarity=0.205 Sum_probs=213.3
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+....|+..|.|+..-..++ .+++|+.|..+-+|.+..-..+.. +.+|+.+|.++.|+++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS 81 (825)
T ss_pred hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence 44567888999998866666 899999999999999876544432 7899999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
..+|++|+.+|+|++||++.++.++ ++.+|...+.++.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence 9999999999999999999988777 7889999999999999999 7899999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
|..+.| +++|.++++++.|.++++||+..++....+..|...+..+.|+|..-.++.|+. +..+++||+++.+.
T Consensus 157 v~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 157 VDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV 230 (825)
T ss_pred eEEEee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence 999999 458899999999999999999999999999999999999999999888888876 67799999999888
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCC
Q 001363 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 600 (1092)
+....... ..|.+..|+|++..+++|....
T Consensus 231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence 87777665 8899999999999888876543
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.4e-19 Score=171.79 Aligned_cols=268 Identities=13% Similarity=0.200 Sum_probs=195.7
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CC
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 408 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg 408 (1092)
.+|.+-|.|+.|.+-|++ +|+|+.|++|+|||...+.-....+ ...+.|.+.|..+.|.+ -|
T Consensus 10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~T---------------s~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCT---------------SSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEe---------------eeEEecCCcEEEEEecCcccc
Confidence 589999999999999996 8999999999999975543222111 11556999999999986 59
Q ss_pred CEEEEEeCCCEEEEEEccC------CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-----
Q 001363 409 SLLGVAYSKHIVQLYAYHG------GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR----- 477 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~------~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~----- 477 (1092)
+.+|+++.|+++.||.-.. +.......++......|+.+.|.|....+.+++++.||.+|||+.-..--
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 9999999999999998631 11222334566777899999999988777999999999999998654322
Q ss_pred -eEEEe-------cCCcCeEEEeecccCCc-cEEEEEecC-----CeEEEEEcCCCCc----eEEecCCCCceEEEEEcc
Q 001363 478 -TYSFE-------GHGAPVYSLCPHAKENI-HFIFSISVD-----GKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSA 539 (1092)
Q Consensus 478 -~~~~~-------~~~~~v~~i~~~~~~~~-~~l~s~~~d-----g~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~ 539 (1092)
.++++ .+..+..|+.|+++.-. ++|+.|+.+ +.+.||....... ..++..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 23333 36667778888765432 467777665 4789998776553 235678888999999999
Q ss_pred CC----CEEEEEecCCCCceeEEEEeCCCCe-----------------EEEEEeeccccCCceEEEEEcCCCCEEEEEeC
Q 001363 540 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 540 dg----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
+- ..|++++. +| |+||.+.... .+..+..+..|++.|..+.|+-.|..|.+.+.
T Consensus 234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 53 34666654 44 9999876311 12333333444599999999999999999999
Q ss_pred CCcEEEEECCC---CceEEEEeCC
Q 001363 599 DHVIKIWDMNK---VQLLTTIDAG 619 (1092)
Q Consensus 599 dg~i~iwd~~~---~~~~~~~~~~ 619 (1092)
||.||+|...- .++...+...
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred CceeeehhhhhhhhheeeeEEecc
Confidence 99999997542 3344445444
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=5.5e-19 Score=171.10 Aligned_cols=256 Identities=13% Similarity=0.176 Sum_probs=190.6
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC-CcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~ 468 (1092)
-.+|.+-|.++.|.+.|+++|+|+.|++|+|||.+.+ .........+.|.+.|..+.|.+- |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 5579999999999999999999999999999996543 234445568899999999999764 66 899999999999
Q ss_pred EEECCC------C---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE------Eec-------
Q 001363 469 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD------- 526 (1092)
Q Consensus 469 vwd~~~------~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~------- 526 (1092)
||.-.. + ....++......|+.++|.|..-|-.+++++.||.+|||+....-... ++.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 1 123556677889999999999999999999999999999865432221 111
Q ss_pred CCCCceEEEEEccC---CCEEEEEecCC-CCceeEEEEeCCCC--e--EEEEEeeccccCCceEEEEEcCCC----CEEE
Q 001363 527 APGLGCTRMAYSAN---GRRLFSCGTSK-EGESFLVEWNESEG--A--IKRTYQGLQLQHNSVSVVHFDTAK----DQIL 594 (1092)
Q Consensus 527 ~~~~~i~~~~~s~d---g~~l~~~~~~~-~~~~~i~iwd~~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~ 594 (1092)
.+..+..|+.|+|. ..++++++.+. ...+.++||....+ + .+..+.+|. .+|+.++|.|+- ..++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence 23446788899874 34677666431 11234666655433 2 344566666 999999999973 5688
Q ss_pred EEeCCCcEEEEECCCCc-----------------eEEEEe-CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 595 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 595 ~~s~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
+++.|| |+||.+.... .+..+. ..+|...|..+.|+-.|..|++.+.||.+++|...-
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 899999 9999987311 112222 334556799999999999999999999999998653
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.2e-19 Score=192.21 Aligned_cols=287 Identities=18% Similarity=0.222 Sum_probs=206.0
Q ss_pred CCCceEEEEEcCCCcEEEEecCCCCee-EEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEE
Q 001363 344 PVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 422 (1092)
Q Consensus 344 pdg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~i 422 (1092)
|+.+.+||.+..||.|.++|...-.-. ....+ . ....|...|..++|-|....|++++.|.++++
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~l------------k--~~~aH~nAifDl~wapge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQL------------K--KPLAHKNAIFDLKWAPGESLLVSASGDSTIRP 126 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhh------------c--ccccccceeEeeccCCCceeEEEccCCceeee
Confidence 344568999999999999998764322 11111 1 14569999999999997778899999999999
Q ss_pred EEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc--------------------------
Q 001363 423 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-------------------------- 476 (1092)
Q Consensus 423 wd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-------------------------- 476 (1092)
||+++++..... .+.||.+.|.+++|.|+... .+++|+.||.|.|||+.-..
T Consensus 127 Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 127 WDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 999998876643 46799999999999999886 89999999999999975321
Q ss_pred -eeEEEecCCcCeEE---EeecccCCccEEEEEec-CCeEEEEEcCCCCceEE--------ecCC---CCceEEEEEccC
Q 001363 477 -RTYSFEGHGAPVYS---LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVD--------YDAP---GLGCTRMAYSAN 540 (1092)
Q Consensus 477 -~~~~~~~~~~~v~~---i~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~--------~~~~---~~~i~~~~~s~d 540 (1092)
.+.....+...|.+ +.+ ..|...|++++. |+.|+|||++....... +..+ ...+.++.....
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~--fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVL--FKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred ccccccccccCceeeeeEEEE--EeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 01112234444433 222 235678898887 99999999987654332 2222 236778888888
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 541 GRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
|.+|++... |+.|+.|++.+-. .+..+.++......+ .-..+|++.++++|+.|...++|.+.+.+.-..+.
T Consensus 283 Gt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l- 356 (720)
T KOG0321|consen 283 GTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL- 356 (720)
T ss_pred CCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCChhhh-
Confidence 888877765 6679999987543 344455544111122 23478999999999999999999998765433222
Q ss_pred CCCCCCCceEEEccC-CCEEEEEeCCCeEEEEECCCC
Q 001363 619 GGGLPENPRICFNKN-GTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.++...|.+++|.|. -.-++++++|..+++|++..+
T Consensus 357 ~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 357 LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 133456899999873 334667799999999999654
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=5.8e-19 Score=172.48 Aligned_cols=299 Identities=15% Similarity=0.205 Sum_probs=207.2
Q ss_pred ccccEEEEEEec----CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001363 733 KANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808 (1092)
Q Consensus 733 ~~~~i~~l~~s~----~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~ 808 (1092)
|..+|..++|.+ +...+++......+.+|+.+... +.++..... ...+......+
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~-D~d~~Esfytc 95 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYA-DEDHDESFYTC 95 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeecc-CCCCCcceEEE
Confidence 677888888874 33345555556688888876431 111222222 22466677778
Q ss_pred EEecCC----CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec
Q 001363 809 ALSKND----AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883 (1092)
Q Consensus 809 ~~s~dg----~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 883 (1092)
+|+-|- -++|.++ -|.|+|.|..++++...+.+|...|..+.+.|++.++|++++.|..|++|++++..++..+-
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 887653 3566665 59999999999999999999999999999999878899999999999999999999998874
Q ss_pred ---cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee-------------eeeeecCCCCcC-------CCCCce
Q 001363 884 ---GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-------------CRSLQTPDGVMT-------LAPSET 940 (1092)
Q Consensus 884 ---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~-------------~~~~~~~~~~~~-------~~~~v~ 940 (1092)
||.+.|.++.|+++|.+++|+|.|.+|++|++...+... ...+.++..+.+ +...|.
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 699999999999999999999999999999998533111 001111111111 001222
Q ss_pred EEEEccCCCEEEE-EeCCcEEEEEc-CCceeeeee------------ccCCCCCEEEEEEe--cCCCEEEEEECCCcEEE
Q 001363 941 HIQFHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFS--CDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 941 ~l~~s~dg~~la~-~~d~~i~lwd~-~~~~~~~~~------------~~~h~~~v~~l~fs--~dg~~l~t~~~Dg~i~v 1004 (1092)
++.|- |.++++ +.++.|..|.. +-.+.+... +.-....|+-+.|+ |-+++||.|...|.|.+
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 22222 577777 78899999987 212221111 11125566666655 55789999999999999
Q ss_pred EEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1005 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1005 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
||++..+... .. .+.....+..|+ ..+|+. |+..|+..++|++|.-||..
T Consensus 334 wdL~~~ep~~-~t---tl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 334 WDLDNNEPPK-CT---TLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EECCCCCCcc-Cc---eEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 9999876641 11 111111234455 456776 58999999999999999863
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=4.2e-19 Score=173.48 Aligned_cols=298 Identities=15% Similarity=0.260 Sum_probs=214.4
Q ss_pred eecccCCCCceEEeecC----CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 328 QTLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~sp----dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
+.+.+|+.+|..++|++ +...++|+.+. ..+.+|+.....-+.. ++.-.-..|......++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCS 96 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee--------------eeeccCCCCCcceEEEE
Confidence 45668888999999984 33335666554 6788998765442221 11111234778888899
Q ss_pred ECCCC----CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 404 WSPDG----SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 404 ~spdg----~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
|+-|. -+||+|+.-|.|+|.|+.+++... .+.+|.+.|+.+.|.|+..+ ++++++.|.+|++|++++..++.
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~ 172 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVA 172 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEE
Confidence 98753 478999999999999999987766 67899999999999999877 89999999999999999999998
Q ss_pred EE---ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE------Ee----------------------cCC
Q 001363 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DY----------------------DAP 528 (1092)
Q Consensus 480 ~~---~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~----------------------~~~ 528 (1092)
.| .||.+.|.++.|+. +|.+|++++.|..+++|++...+-.. .+ ..|
T Consensus 173 VfGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 173 VFGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred EecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 87 56999999999965 66799999999999999997432111 00 111
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeC-CCCeEE----------EEEeeccccCCceEEE--EEcCCCCEEEE
Q 001363 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIK----------RTYQGLQLQHNSVSVV--HFDTAKDQILA 595 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~-~~~~~~----------~~~~~~~~~~~~v~~~--~~~~~~~~l~~ 595 (1092)
...|.|+.|- |.++++-+- ++.|..|.+ +-++.+ ..+.........+.-+ +|.|-++.|+.
T Consensus 251 rnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 251 RNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 1122222222 456666543 557999987 222211 1111111112444444 55667889999
Q ss_pred EeCCCcEEEEECCCCce--EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 596 AGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 596 ~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
|...|.|++||++.... ..++..+.....|...+|+.||..|+...+|++|.-||..
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999987655 3444444455678999999999999999999999999864
No 157
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=8.5e-20 Score=185.68 Aligned_cols=252 Identities=15% Similarity=0.182 Sum_probs=193.2
Q ss_pred EEEEEECC-------CCCEEEEEeCCCEEEEEEccCCCcccceEEE------------------cccccceeEEEEecCC
Q 001363 399 VNRVVWSP-------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEI------------------DAHVGNVNDLAFSAPC 453 (1092)
Q Consensus 399 V~~l~~sp-------dg~~las~~~d~~i~iwd~~~~~~~~~~~~~------------------~~h~~~v~~~~~s~d~ 453 (1092)
..|++|.. -|+|+|.|+.|..|.|||+.-...+.+...| .+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 34566643 3689999999999999998643322222222 2799999999999887
Q ss_pred CcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceE
Q 001363 454 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCT 533 (1092)
Q Consensus 454 ~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 533 (1092)
+. +|+|||.|.+|++||+.+|++..++..|...|.++.|++. ...+|++|+.|++|.+.|.+........-...+.|.
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 77 8999999999999999999999999999999999999986 457999999999999999985433322222345788
Q ss_pred EEEEccCCCEEEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 001363 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 611 (1092)
.++|.|.....+.++. .+|+|+-+|++.. +++.++..|. ++|.++++++... .+++++.|+.|.+|++..-.
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 8999998877666664 2788999999865 8899999988 8999999998754 56779999999999987644
Q ss_pred eEEEEeCCCCCCCCceEEEccCC-CEEEEEeCCCeEEEEECCCCceee
Q 001363 612 LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1092)
........-......|.++.|+- -.++.|+..+.++|||+.+...+.
T Consensus 408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 42222211112234566777754 467788888899999998775443
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=6.8e-17 Score=188.09 Aligned_cols=371 Identities=23% Similarity=0.348 Sum_probs=275.1
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC-eeEEeeeeeeecccccceeeEeeecCCC-CcEEEEEE-C
Q 001363 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S 405 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~-s 405 (1092)
.+.+|...|.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 5678899999999999998 67888889999999999886 3322 23322 46777777 8
Q ss_pred CCCC-EEEEEeC-CCEEEEEEccC-CCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-CCcEEEEECCCCceeEEE
Q 001363 406 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 406 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~ 481 (1092)
+++. +++..+. |+.+.+|+... ... ...+..|...|..++|+|++. .+++++. |+.+++|+..++..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKL---IRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeE---EEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999987 432 336778999999999999999 6777775 999999999999999999
Q ss_pred ecCCcCeEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+|...|.++++. +++. ++++++.|+.|++||........ .+..+.... ...|++++..+++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 9999999999997 4555 55666999999999888666655 466666654 3389999988886655 667999
Q ss_pred EeCCCCeE-EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001363 560 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 560 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++
T Consensus 268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344 (466)
T ss_pred eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEE
Confidence 99987665 44444444 889999999988899888888999999998887776665112222578888843435666
Q ss_pred EE-eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee-eccccccceeccc
Q 001363 639 VI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS-VEAENKSEVEKPL 716 (1092)
Q Consensus 639 ~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-~~~d~~i~lw~~~ 716 (1092)
.+ ..|+.+.+|+............... +..+.+. ++ ..... +..++.+.+|+..
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~-~~~~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 345 SGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS----------------------PD-GRVVSSGSTDGTVRLWDLS 400 (466)
T ss_pred EeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC----------------------CC-CCEEEEecCCCceEEEecc
Confidence 65 6789999999988762222222211 4555554 22 22333 5778899999976
Q ss_pred cccCccccccccCCcccc-ccEEEEEEecCCcEEEEeecCCeeEEEeecC
Q 001363 717 FARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1092)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~ 765 (1092)
......... .. ..+....+++++..++.++.++.+++|+...
T Consensus 401 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 401 TGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 433222111 11 6788899999999999988899999998643
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=2e-16 Score=184.10 Aligned_cols=372 Identities=23% Similarity=0.395 Sum_probs=285.3
Q ss_pred EcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEecCCc-CeEEEeecccCCcc-EEEEEec-CCeEE
Q 001363 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKIK 512 (1092)
Q Consensus 437 ~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~-~v~~i~~~~~~~~~-~l~s~~~-dg~i~ 512 (1092)
+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. +++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 557999999999999999 78888899999999998887 6777776443 77777775 55555 5555444 99999
Q ss_pred EEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001363 513 AWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 513 vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1092)
+|+... ......+..+...+..++|+|+++.+++++. .++.+.+|+...+..+..+.+|. ..+.+++|+|++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~ 211 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDGG 211 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCcc
Confidence 999998 6777788889999999999999998777753 36779999999988888888866 8999999999998
Q ss_pred -EEEEEeCCCcEEEEECCCCceEE-EEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCce-eeecccccCcee
Q 001363 592 -QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNLR 668 (1092)
Q Consensus 592 -~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~v~ 668 (1092)
.+++++.|+.+++||...+.... .+..+... . ...|++++.++++++.|+.+++|+...... +...
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------- 280 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-------- 280 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------
Confidence 44555899999999988777777 46555332 2 228999998999999999999999886532 1110
Q ss_pred eeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcE
Q 001363 669 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 748 (1092)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 748 (1092)
..|...+.++.+.|++..
T Consensus 281 --------------------------------------------------------------~~~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 281 --------------------------------------------------------------SGHSSSVLSVAFSPDGKL 298 (466)
T ss_pred --------------------------------------------------------------ecCCccEEEEEECCCCCE
Confidence 114567788888888888
Q ss_pred EEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE--eCCeEE
Q 001363 749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVIS 826 (1092)
Q Consensus 749 l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~--sdg~i~ 826 (1092)
+++++.++.+.+|+...... ..... ...|...+..+.+.+++..++.+ .++.+.
T Consensus 299 ~~~~~~d~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 299 LASGSSDGTVRLWDLETGKL----------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred EEEeeCCCcEEEEEcCCCce----------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 88888887788886543321 11111 11255678888884333555555 368899
Q ss_pred EEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE-EeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001363 827 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905 (1092)
Q Consensus 827 iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 905 (1092)
+|+............. ..+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..+++++
T Consensus 355 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
T COG2319 355 LWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431 (466)
T ss_pred eeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEec
Confidence 9999887733333322 2288999998 7 55555 88999999999999887777765547899999999999999999
Q ss_pred CCCcEEEEEcCC
Q 001363 906 GDAQIFVWDVDG 917 (1092)
Q Consensus 906 ~Dg~I~iwd~~~ 917 (1092)
.++.+++|+...
T Consensus 432 ~~~~~~~~~~~~ 443 (466)
T COG2319 432 SDNTIRLWDLKT 443 (466)
T ss_pred CCCcEEEEeccC
Confidence 999999999987
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.3e-20 Score=211.96 Aligned_cols=296 Identities=16% Similarity=0.263 Sum_probs=226.5
Q ss_pred ceEEeecCCCceEEEEEcC----------CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 337 PMSMDFHPVQHTLLLVGTN----------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~----------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
-..+||||++..++|+|.. +.++.||.+.-..... | ++..---.-......++|++
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~-------d-------lk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS-------D-------LKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc-------c-------ccccccccccccceeeeecc
Confidence 3468999999767887743 2344455443211110 0 00000011245678899999
Q ss_pred CCCE----EEEEeCCCEEEEEEccC---CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 407 DGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 407 dg~~----las~~~d~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
.|.. ||.|..||.|.+||... +.....+.+...|++.|..+.|++.... +|++|+.||.|.|||+..-+.-.
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 7766 88889999999999876 4444445567789999999999998876 89999999999999998866555
Q ss_pred EEe--cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--ceEEEEEccCCCE-EEEEecCCCCc
Q 001363 480 SFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRR-LFSCGTSKEGE 554 (1092)
Q Consensus 480 ~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~dg~~-l~~~~~~~~~~ 554 (1092)
... .....|.+++|+.. ..++|++++.+|++.|||++..+.+..+..+.. .+..++|+|++.. +++++ +.+..
T Consensus 154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As-~dd~~ 231 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS-GDDSA 231 (1049)
T ss_pred CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeec-CCCCC
Confidence 442 24567999999743 557899999999999999999988887766655 4778999998764 44444 45668
Q ss_pred eeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 555 SFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 555 ~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
-.|.+||++. ...++.+++|. ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+ ..+..+.|+|
T Consensus 232 PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~p 306 (1049)
T KOG0307|consen 232 PVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCP 306 (1049)
T ss_pred ceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecC
Confidence 8999999874 45677788888 899999999987 788899999999999999999999998643 4688999999
Q ss_pred CCC-EEEEEeCCCeEEEEECCCC
Q 001363 633 NGT-LLAVIANENRIKILETPES 654 (1092)
Q Consensus 633 ~~~-~l~~~~~dg~i~iw~~~~~ 654 (1092)
... .+++++-||.|.|+.+...
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCcchhhhheeccceeeeeeecC
Confidence 554 8899999999999998765
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=7.4e-19 Score=180.33 Aligned_cols=293 Identities=16% Similarity=0.203 Sum_probs=214.7
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE--eCCCeEEEEECCCCceeeecccccCceeeee
Q 001363 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1092)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 671 (1092)
..++....+++||.........+..+...+.+.+++|+.... |+++ +.|..+++|.-.....
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~--------------- 69 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP--------------- 69 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC---------------
Confidence 334444579999998877776666666666789999987654 4443 4577788886442200
Q ss_pred ecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEE
Q 001363 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 751 (1092)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 751 (1092)
+|-+-... ....-.|++......++++
T Consensus 70 -------------------------------------~Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~s 96 (673)
T KOG4378|consen 70 -------------------------------------EVPRVRKL----------------TGDNAFCVACASQSLYEIS 96 (673)
T ss_pred -------------------------------------ccceeecc----------------ccchHHHHhhhhcceeeec
Confidence 00000000 1112223344444578999
Q ss_pred eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEc
Q 001363 752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 830 (1092)
Q Consensus 752 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~ 830 (1092)
++..+.++|||++... .-..+. +|...|+++.+.-...|||++++ |.|.|..+
T Consensus 97 gG~~~~Vkiwdl~~kl------------------------~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAKL------------------------IHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred cCcCceeeehhhHHHH------------------------Hhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 9999999999986421 111122 48899999999999999999995 88999999
Q ss_pred CCceeeEEecCCCC-CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee-ccccCCeEEEEEcCCC-CEEEEEeCC
Q 001363 831 MTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDAL-NILVSSGGD 907 (1092)
Q Consensus 831 ~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~spdg-~~l~s~s~D 907 (1092)
.++.....|....+ .|+-+.|+|....+|.+++.+|.|.+||+....+...+ +.|..+...++|+|.. .+|++.|.|
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence 99988888876544 56689999966678888999999999999987766554 5699999999999954 778999999
Q ss_pred CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCCCEEEEEE
Q 001363 908 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATF 986 (1092)
Q Consensus 908 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~f 986 (1092)
+.|.+||........ ++.. ..+..+++|+++|.+|++| ..|.|..||++..+..-..+..|...|++++|
T Consensus 231 kki~~yD~~s~~s~~--~l~y-------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 231 KKINIYDIRSQASTD--RLTY-------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred ceEEEeecccccccc--eeee-------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 999999998743222 1111 1257899999999999995 77999999998766555557789999999999
Q ss_pred ecCC
Q 001363 987 SCDC 990 (1092)
Q Consensus 987 s~dg 990 (1092)
-+..
T Consensus 302 q~s~ 305 (673)
T KOG4378|consen 302 QPSP 305 (673)
T ss_pred eecc
Confidence 8765
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=7.3e-19 Score=179.39 Aligned_cols=306 Identities=13% Similarity=0.118 Sum_probs=222.4
Q ss_pred CceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccc
Q 001363 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 733 (1092)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~ 733 (1092)
-......+.+...|++++|.|. ...+++++|+.-|.|-+|++...++.....+.+ ..|
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt--------------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f--~~h 233 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPT--------------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF--TPH 233 (498)
T ss_pred ceecceeEecccceEEEEeccc--------------------CcceEEEEccCCCcEEEEecCCCCCccCceEEe--ccC
Confidence 3444556667788999999874 345788999999999999996444443333333 348
Q ss_pred cccEEEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 734 ANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 734 ~~~i~~l~~s~~-g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
..+|.++.|+|. -..+++.+.||+|++-|+...... . ++..+ .....+..+.|+.
T Consensus 234 s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-----------~---------v~s~~----~d~~~fs~~d~~~ 289 (498)
T KOG4328|consen 234 SGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-----------E---------VLSLD----TDNIWFSSLDFSA 289 (498)
T ss_pred CccccceEecCCChhheeeeccCceeeeeeecchhhH-----------H---------HhhcC----ccceeeeeccccC
Confidence 999999999995 456888999999999887654210 0 11100 1345667788888
Q ss_pred CCCEEEEEeC-CeEEEEEcCCcee-eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee----eEeecccc
Q 001363 813 NDAYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHS 886 (1092)
Q Consensus 813 dg~~l~~~sd-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~----~~~l~~h~ 886 (1092)
+...++.+.+ |.+.+||..+... ...+.-|...|+.++++|....+|||++.|++++|||++.-.. .-....|.
T Consensus 290 e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr 369 (498)
T KOG4328|consen 290 ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR 369 (498)
T ss_pred CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence 8888888875 8999999987654 5666778889999999998888999999999999999976322 23334599
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC---CCceeeeeeeecC--CCCcCCCCCceEEEEccCCCEEEEE-eCCcEE
Q 001363 887 KRVTGLVFSDALNILVSSGGDAQIFVWDVD---GWGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 960 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~---~~~~~~~~~~~~~--~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~ 960 (1092)
..|.++.|||++..|+|.+.|..|+|||.. ..-... ..+... .+.. -.....+|.||..+++++ .-..|-
T Consensus 370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~-~~I~Hn~~t~Rw---lT~fKA~W~P~~~li~vg~~~r~ID 445 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL-GTIPHNNRTGRW---LTPFKAAWDPDYNLIVVGRYPRPID 445 (498)
T ss_pred ceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc-ceeeccCccccc---ccchhheeCCCccEEEEeccCccee
Confidence 999999999999889999999999999985 211111 111111 1111 135667999999999996 567799
Q ss_pred EEEcCCceeeeeeccCCCCCEEE-EEEecCCCEEEEEE-CCCcEEEEEcCC
Q 001363 961 IYEAEELTCLKQWFPISSVPISQ-ATFSCDCRMVFTSF-VDGTLSIHEASN 1009 (1092)
Q Consensus 961 lwd~~~~~~~~~~~~~h~~~v~~-l~fs~dg~~l~t~~-~Dg~i~vwd~~~ 1009 (1092)
|+|...++.+..+.......|.+ ..|.|-+..+++|+ ..|.|+||--+.
T Consensus 446 v~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 446 VFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred EEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 99999999888765555555655 46888777455544 567888886543
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.4e-18 Score=178.32 Aligned_cols=293 Identities=14% Similarity=0.171 Sum_probs=220.1
Q ss_pred EEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE--EeCCCEEEEEEccC
Q 001363 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV--AYSKHIVQLYAYHG 427 (1092)
Q Consensus 350 lasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las--~~~d~~i~iwd~~~ 427 (1092)
+|+++ .+++|||+..-+....+. -......+.++.|+.... |++ .+.|..|++|.-..
T Consensus 7 ~aS~g--d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g 66 (673)
T KOG4378|consen 7 VASTG--DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDG 66 (673)
T ss_pred eeccC--CceEEeecccccCccccc-----------------cCCCCCcceeeeccccce-EEEeecCCceeEEEecccC
Confidence 44443 579999997654432210 001123488999998664 444 45678899997654
Q ss_pred CCc-ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe
Q 001363 428 GSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506 (1092)
Q Consensus 428 ~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~ 506 (1092)
... +.......+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|...|+++.++. ...+|++++
T Consensus 67 ~~~~Vp~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs 140 (673)
T KOG4378|consen 67 KTPEVPRVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVS 140 (673)
T ss_pred CCCccceeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEec
Confidence 311 1111122222 233333333334 899999999999999998888889999999999999865 447999999
Q ss_pred cCCeEEEEEcCCCCceEEecCC-CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001363 507 VDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1092)
Q Consensus 507 ~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1092)
..|.|.+..+.++.....+... +..+.-+.|+|..+.+++...+ ++.|.+||......+..+.. .|..+...++
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gic 215 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGIC 215 (673)
T ss_pred cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcce
Confidence 9999999999988877777766 4456789999998887765542 77899999988777655433 2358899999
Q ss_pred EcCCCC-EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-ceeeecccc
Q 001363 586 FDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVL 663 (1092)
Q Consensus 586 ~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~ 663 (1092)
|+|.+. .+++.+.|..|.+||....+....+.... +...++|+++|.+|++|...|.|..||++.. .++..+..|
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred ecCCccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence 999765 45668999999999999887777776543 4689999999999999999999999999854 678889999
Q ss_pred cCceeeeeecCCC
Q 001363 664 SDNLRKLSVNPIS 676 (1092)
Q Consensus 664 ~~~v~~~~~~~~~ 676 (1092)
...|++++|.+..
T Consensus 293 ~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 293 DASVTRVAFQPSP 305 (673)
T ss_pred ccceeEEEeeecc
Confidence 9999999998765
No 164
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.4e-17 Score=175.64 Aligned_cols=604 Identities=12% Similarity=0.099 Sum_probs=358.1
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC------
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG------ 408 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg------ 408 (1092)
..-.++.|+|.| ++|-|+. ..|.|-|..+-+.+.. +.-|...|+.+.|.|-.
T Consensus 16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ll 73 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLL 73 (1062)
T ss_pred ccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhcc
Confidence 357789999999 6888875 6789999988887765 55699999999998731
Q ss_pred ------CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec---CCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 409 ------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 409 ------~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
-+||++...|.|.+||...+..+. .+..|..++..++|-+ +++. +|+.-....++.+|+..+|+...
T Consensus 74 S~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 74 SPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred CccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceee
Confidence 267888888999999999886555 5677888999999865 3434 55556667799999999999998
Q ss_pred EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC-------ceEEecCCCC----------------------
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-------ARVDYDAPGL---------------------- 530 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~---------------------- 530 (1092)
..........++.+.|-... .+..-+..|.+.+.+.-... ..+....+..
T Consensus 150 k~~ys~~iLs~f~~DPfd~r-h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 150 KYDYSHEILSCFRVDPFDSR-HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred ccccCCcceeeeeeCCCCcc-eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 87766667777887766443 44444455555555432111 1111111100
Q ss_pred ---ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC--CEEEEEeCCCcEEEE
Q 001363 531 ---GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIW 605 (1092)
Q Consensus 531 ---~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iw 605 (1092)
-...++|+|.-+.++.... ...+.++|++-..++....-.. +.+.-+.+-|++ ..+++.-.||.+.+|
T Consensus 229 fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0123566776554444433 2339999999888887777655 666667777764 568999999999999
Q ss_pred ECCCC----------------ceEEEEeCCCCCCCCceEEEccC-CCEEEEEeCCCeEEEEECCCCceeeecc-------
Q 001363 606 DMNKV----------------QLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAG------- 661 (1092)
Q Consensus 606 d~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~------- 661 (1092)
-.+.. .....+..-.. ..+...+..|. ...+++.-.+|...+|.+.+++......
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~-~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEE-FRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechh-cccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 76542 11111111111 11222333343 4556666677888889888653221111
Q ss_pred ------------------------cccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001363 662 ------------------------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 662 ------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~ 717 (1092)
+|.....+....|.....-+.... +......--.+++.|...|+|.++|+.+
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p----~~n~~~~~~pLvAvGT~sGTV~vvdvst 456 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDP----GGNTPAGTVPLVAVGTNSGTVDVVDVST 456 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCC----CCCccceeeeeEEeecCCceEEEEEecc
Confidence 112222222222211111000000 0000011124578899999999999876
Q ss_pred ccCccccccccCCccccccEEEEEEecCCcEEEEeecC--CeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeec
Q 001363 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 795 (1092)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 795 (1092)
+.......+ |...|.++.|....+.+-.+.+. ..-.+ -.+.+.+-++.+|.......
T Consensus 457 ~~v~~~fsv------ht~~VkgleW~g~sslvSfsys~~n~~sg~---------------vrN~l~vtdLrtGlsk~fR~ 515 (1062)
T KOG1912|consen 457 NAVAASFSV------HTSLVKGLEWLGNSSLVSFSYSHVNSASGG---------------VRNDLVVTDLRTGLSKRFRG 515 (1062)
T ss_pred hhhhhhhcc------cccceeeeeeccceeEEEeeeccccccccc---------------eeeeEEEEEccccccccccc
Confidence 554444433 88999999998887754433321 00000 01234455666666444433
Q ss_pred CCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEc-CC---------------CCCE
Q 001363 796 TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNNV 858 (1092)
Q Consensus 796 l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d~~~ 858 (1092)
+++ ..+.+|+.+..|.-|+|++..- +.-+.+||+++..+++...-.-.-++.++|+ |. ..+.
T Consensus 516 l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~ 594 (1062)
T KOG1912|consen 516 LQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENL 594 (1062)
T ss_pred CCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhce
Confidence 333 5788999999999999999997 6779999998877766554344458888887 31 1123
Q ss_pred EEEEeCCCcEEEEEcCC-------cee-eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001363 859 IAIGMDDSTILIYNARS-------SEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930 (1092)
Q Consensus 859 lasg~~dg~v~iwd~~~-------~~~-~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 930 (1092)
++..+ +..+++.+.- +.. ....+.....+..++| .+..|+.|..+|.+.+||+....... .... .
T Consensus 595 vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg--~~d~-p 667 (1062)
T KOG1912|consen 595 VVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG--VRDS-P 667 (1062)
T ss_pred eeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC--ccCC-C
Confidence 33333 2333333321 111 1111111223344666 46699999999999999987632111 1111 1
Q ss_pred CCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCC--CCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 931 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 931 ~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
.+. .......+-|.....++-...-+-+||.+....+..+ .+. +..+..+.+......++ ..|.++|+-.+.
T Consensus 668 ~~r---a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~ 741 (1062)
T KOG1912|consen 668 DPR---AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMP 741 (1062)
T ss_pred Cch---hhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEEecc
Confidence 111 1233344445433444445566889999887777764 333 33444455544443333 345577776665
Q ss_pred CCce
Q 001363 1009 NLEV 1012 (1092)
Q Consensus 1009 ~~~~ 1012 (1092)
....
T Consensus 742 mks~ 745 (1062)
T KOG1912|consen 742 MKSP 745 (1062)
T ss_pred ccCC
Confidence 5443
No 165
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.81 E-value=2.9e-18 Score=167.19 Aligned_cols=409 Identities=11% Similarity=0.111 Sum_probs=260.6
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
-+.|||+|+|+|+++.- .+.|=|.++-+..+.. .--..|..+.|..|... .+.....|+.|.+|++...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999776 6888888875443311 12346888999999885 566778899999999999988888
Q ss_pred EecCCcCeEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 481 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
+.....++.+++|+| || ++|.+...|-+|.+|.+.+..... +......+..++|+|||++.+.++.. +-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 988889999999966 55 677788889999999998866544 33344566889999999999988642 22223333
Q ss_pred EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001363 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
..-.....++.+.... ...+.+.|+|||+.+++ ||.--.-.+..... .-.+..++|+|.++++++
T Consensus 163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~---~lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeee---ccceeEEEeccccceEEe
Confidence 3333344455555544 56788999999987765 43221111111111 124788999999999999
Q ss_pred EeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc
Q 001363 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 640 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~ 719 (1092)
|+.|+.+++.+--+-+.+..+-. -. +-.|.+..+-..+..+
T Consensus 228 GsyD~~lrvlnh~tWk~f~eflh-l~--------------------------------------s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFLH-LC--------------------------------------SYHDPTLHLLEKETFS 268 (447)
T ss_pred eccchhhhhhceeeeeehhhhcc-ch--------------------------------------hccCchhhhhhhhhcc
Confidence 99999999977554433322210 00 0001110000000000
Q ss_pred CccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCC
Q 001363 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 799 (1092)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 799 (1092)
. -.-...++.|.|..- ...+|......+. .......+....+.+ +. +
T Consensus 269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE---~~~~pv~~~~lkp~t-------D~--p 315 (447)
T KOG4497|consen 269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIYE---QQMTPVKVHKLKPPT-------DF--P 315 (447)
T ss_pred h------------hhhcccccccCCCcc---------ccCccccchhhhh---hhhcceeeecccCCC-------CC--C
Confidence 0 001122344444321 1111111100000 000000000001111 11 1
Q ss_pred CCCCCeeEEEEecCCCEEEEEeC---CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 800 NSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~~l~~~sd---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
+..-.+.-++||+|..++++-.| +.+.+||++..+....+. ...+|.+..|.| ....|+.......+++|.....
T Consensus 316 nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 316 NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCc
Confidence 23456778999999999999986 569999998776654443 556899999999 7778888877788999988765
Q ss_pred eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCc
Q 001363 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 909 (1092)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~ 909 (1092)
.++..- +..-.|..+.|.-+|..++-.+.|.-
T Consensus 394 ~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 394 RVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 555433 33467999999999999999998873
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=2.6e-18 Score=170.93 Aligned_cols=264 Identities=16% Similarity=0.208 Sum_probs=185.8
Q ss_pred ecccCCCCceEEeecCCCc-eEEEEEcCCCcEEEEecCCCC-eeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 329 TLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
...+|.+.+..+.-++-|+ .+.|+=+..|.|.|||+..-- .+..-.+.+-+ ...+++ ..+.+|...=..++|||
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~--s~~~Pl--~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD--SEFRPL--FTFNGHKGEGYGLDWSP 221 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc--cccCce--EEecccCccceeeeccc
Confidence 3456777888888887653 366777778999999985321 11110111111 001111 23778999999999999
Q ss_pred C-CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC---ceeEEEe
Q 001363 407 D-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFE 482 (1092)
Q Consensus 407 d-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~ 482 (1092)
- -..|++|.-.+.|++|...+|.-..-...+.+|+..|-.++|||..+. .|+|||-||+|+|||++.+ .++. .+
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~-~k 299 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVS-TK 299 (440)
T ss_pred ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeE-ee
Confidence 2 234778877778999999987644333357789999999999998877 8999999999999999988 3333 38
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.|...|+.+.|+... .+|++|+.||+++|||++.. +++..++.|..+|+++.|+|...-.+.++. .+.+|.+
T Consensus 300 Ah~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~Qiti 374 (440)
T KOG0302|consen 300 AHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITI 374 (440)
T ss_pred ccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEEE
Confidence 899999999996543 49999999999999999864 456788999999999999996654444332 2778999
Q ss_pred EeCCCCeE----------------EEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEE
Q 001363 560 WNESEGAI----------------KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIW 605 (1092)
Q Consensus 560 wd~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iw 605 (1092)
||+..-.- .+.+-.|. ....+..+.|++.- .++++.+.|| +.||
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 99863211 01112222 12467778888874 4566666776 4444
No 167
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=3.9e-18 Score=169.72 Aligned_cols=250 Identities=15% Similarity=0.171 Sum_probs=185.0
Q ss_pred CCCCCeeEEEEecCCCEEEEE--eC-CeEEEEEcCC----------------ceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001363 800 NSQEAVPCFALSKNDAYLFSA--SG-GVISLYIVMT----------------FKTILTIMPPSPTATSLAFNPHDNNVIA 860 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~~l~~~--sd-g~i~iwd~~~----------------~~~~~~~~~~~~~i~~l~~s~~d~~~la 860 (1092)
+|.+.+..+..++-++-.+++ ++ |.|.||++.. .+.+.++.+|...-.+++|||...-.|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 477778888777766444444 44 9999999742 3456778899999999999995555688
Q ss_pred EEeCCCcEEEEEcCCcee---eEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001363 861 IGMDDSTILIYNARSSEV---ISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1092)
Q Consensus 861 sg~~dg~v~iwd~~~~~~---~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1092)
+|.--+.|++|...+|.- ...+.+|+..|..|+|||. ...|||||.||+|+|||+..+........ ..|..
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~s-- 303 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHNS-- 303 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---eccCC--
Confidence 888889999999988752 3556789999999999995 57899999999999999998755443333 23332
Q ss_pred CCceEEEEccCCCEEEEE-eCCcEEEEEcCC---ceeeeeeccCCCCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCc
Q 001363 937 PSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 937 ~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~---~~~~~~~~~~h~~~v~~l~fs~d-g~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
.|..+.|+.+-.+||+| .||+++|||+++ ++.+.. +.-|..+|+++.|+|. ...|+++|.|..|.+||+....
T Consensus 304 -DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~-fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 304 -DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT-FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred -ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee-EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 69999999999999984 779999999974 445555 5679999999999984 5678888899999999987543
Q ss_pred e---EEee--ccccccCCCC---ccccccceEEEECCCCCCEEEEEeCCCcEE
Q 001363 1012 V---QCRI--LSTAYLRPTT---SCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus 1012 ~---~~~~--~~~~~~~~~~---~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~ 1056 (1092)
- .... .....+|++. |.+.-..-.+.||++-+.++++.+.||.-.
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnV 434 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNV 434 (440)
T ss_pred ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeE
Confidence 2 0000 0011233321 222212225679999899999999999633
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=4.8e-18 Score=170.01 Aligned_cols=237 Identities=16% Similarity=0.272 Sum_probs=187.6
Q ss_pred eecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCc----ccceEEEcccccceeEEEEecCCCcEEEEEEeCCC
Q 001363 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
+..||+++|..++|+| +...||+||.|.+|.||.+-.+.. ......|.+|...|--++|+|.... .|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4789999999999999 778999999999999999875533 2345578999999999999998877 789999999
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-ceEEEEEccCCCEE
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL 544 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l 544 (1092)
+|.+||+.+|+.+.++. |.+.|.+++|+ .||.+|++.+.|+.|||||.++++....-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999987 99999999995 4788999999999999999999988887766654 455677888998 7
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce-EEEEeCCCCC
Q 001363 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL-LTTIDAGGGL 622 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~-~~~~~~~~~~ 622 (1092)
++.+.++-.+.++-+||..+-+.-..+.... ..+.|.--.+.++.+.++.++ .|+.||.|.+....+ +.-+..-...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 7777777779999999987654433332222 135677778899988886654 899999999987653 3333322223
Q ss_pred CCCceEEEccC
Q 001363 623 PENPRICFNKN 633 (1092)
Q Consensus 623 ~~v~~v~~s~~ 633 (1092)
..-..+.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 34466777764
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.1e-17 Score=162.96 Aligned_cols=289 Identities=14% Similarity=0.192 Sum_probs=206.7
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC-------CCCCE
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-------PDGSL 410 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s-------pdg~~ 410 (1092)
..+.|||||.. +.+-+.|..+.+|++...-.-.....+ ........+-......|...+|- |+..+
T Consensus 53 kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 53 KGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred ccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence 35689999984 667788999999998532111100000 00000001111134566777765 67889
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEccccc---ceeEEEEecCCCcEEEEEEeCCCcEEEEEC-CCCcee--EEE---
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF--- 481 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~---~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-~~~~~~--~~~--- 481 (1092)
+|+.+.+.-|++||.-+|+...... .-.|.. ...+++|+|||. .|++ +....|+++|+ +.|+.- +..
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred eeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhhhc
Confidence 9999999999999999998654322 223444 345899999999 4654 55789999998 455432 211
Q ss_pred --ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 482 --EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 482 --~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+..+.+.+++|+|. +...++.|+...++-++.....++...+.+|++.|+.+.|.+||+.|++++. .+..|..
T Consensus 202 ~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl~ 277 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKILC 277 (406)
T ss_pred ccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEEE
Confidence 233677888899886 4468999999999999999999999999999999999999999999999875 3556999
Q ss_pred EeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEE
Q 001363 560 WNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1092)
Q Consensus 560 wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1092)
||++. +..+..+..|....+.-......|++++|++|+.||.|++||+.+ |..+..+..+. ..++.++++|--.++
T Consensus 278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mpil 355 (406)
T KOG2919|consen 278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMPIL 355 (406)
T ss_pred EeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCccccee
Confidence 99974 556666666662122223345678899999999999999999998 66566665443 358899999998888
Q ss_pred EEEeCC
Q 001363 638 AVIANE 643 (1092)
Q Consensus 638 ~~~~~d 643 (1092)
|+++..
T Consensus 356 atssGq 361 (406)
T KOG2919|consen 356 ATSSGQ 361 (406)
T ss_pred eeccCc
Confidence 887764
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=3.4e-17 Score=165.05 Aligned_cols=300 Identities=14% Similarity=0.187 Sum_probs=213.8
Q ss_pred cccEEEEEEecCCc-EEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 734 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 734 ~~~i~~l~~s~~g~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
..++..+.|.+++. .+++++.|..|++|.+........+ ......-.+. .|...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence 45788899988877 8999999999999998765321110 0112222333 3999999999999
Q ss_pred CCCEEEEEeC-CeEEEEEcC--------C--------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC
Q 001363 813 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 813 dg~~l~~~sd-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
+|.+||+|+| |.+.+|-.. + +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 9999999985 889999765 2 344567888999999999999 999999999999999999999
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee---eecCCCCcC------------CCCCce
Q 001363 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMT------------LAPSET 940 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~---~~~~~~~~~------------~~~~v~ 940 (1092)
|+....+.+|...|..++|.|-++++++-+.|...+++.+.........- +....+... ...-..
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999877777665432211100 000000000 002356
Q ss_pred EEEEccCCCEEEEE-----eCC-----cEEEEEcCCceeeeeeccCCCCCEEEEEEec--------CC---------CEE
Q 001363 941 HIQFHKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC---------RMV 993 (1092)
Q Consensus 941 ~l~~s~dg~~la~~-----~d~-----~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg---------~~l 993 (1092)
.++|+|||.+|++. ..+ ..++|+-...+.....+++-..++..+.|+| +. +++
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 78999999999982 222 3456654433322222444466666777766 11 233
Q ss_pred EEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 994 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 994 ~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
+.......|+|||.++...++.....-| ..+. .++|++ |+..++..+.||-..+--+.
T Consensus 315 faiAt~~svyvydtq~~~P~~~v~nihy-------~~iT--Diaws~-dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 315 FAIATKNSVYVYDTQTLEPLAVVDNIHY-------SAIT--DIAWSD-DGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred EEEeecceEEEeccccccceEEEeeeee-------eeec--ceeecC-CCcEEEEeccCCceEEEEEc
Confidence 3333456899999999888877663332 2333 788998 68999999999977665553
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1.2e-17 Score=162.75 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=150.0
Q ss_pred eeEEEEecCCCEEEEEeCCeEEEEEc-CCceeeE---Ee----cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 805 VPCFALSKNDAYLFSASGGVISLYIV-MTFKTIL---TI----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~sdg~i~iwd~-~~~~~~~---~~----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
..+++|+|||..|..|....|+++|+ ..|+.-. ++ .+..+-+.+++|+|.+...+|+|+....+-||.-..+
T Consensus 161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 45899999999999999999999999 4443221 11 1235678999999988889999999999999999999
Q ss_pred eeeEeeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-
Q 001363 877 EVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 954 (1092)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~- 954 (1092)
.++..+-+|.+.|+.+.|.+||+.|.+|++ |-.|..||+.... .++-.+..|......-......|+|++|++|
T Consensus 241 ~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~ 316 (406)
T KOG2919|consen 241 RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASGD 316 (406)
T ss_pred CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeeccC
Confidence 999999999999999999999999999885 6679999998633 2333333333211122345558999999996
Q ss_pred eCCcEEEEEcCC-ceeeeeeccCCCCCEEEEEEecCCCEEEEEECC
Q 001363 955 HETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 999 (1092)
Q Consensus 955 ~d~~i~lwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D 999 (1092)
.||.|++||+.+ |..+.. ...|+..+..+++.|-=.+++|++..
T Consensus 317 tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 317 TDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc
Confidence 899999999987 665554 55689999999999987778877654
No 172
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=2e-16 Score=164.27 Aligned_cols=498 Identities=14% Similarity=0.120 Sum_probs=298.0
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEccccccee-EEEEe-----cCCCcEEEEEEeCCCcE
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFS-----APCKQISVITCGDDKTI 467 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s-----~d~~~l~l~s~~~d~~i 467 (1092)
.|...|.|+.|+.....+.+++++..+.-||+.+.+. ... .+ ...-|. .+..- ..+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 3677788999998887777776665555556554321 111 11 111111 11110 01111157888889999
Q ss_pred EEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
.+-+ +.++.-..+..|.+.+.+-.|++ ||.-|++++.||.|++|.- ++-...++.....+|.|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 88888889999999999999955 6678999999999999963 333333455566789999999999888877
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
. .+.+++=.+.....+-..+.|. +-|.++.|++..+.+++|++|-..+|||... ..+..-..|. .+|++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~e--y~ITS 232 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEE--YAITS 232 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeecccC-cccccCChhc--cceee
Confidence 5 3347777777676677777877 9999999999999999999999999999754 4444444443 46999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++|+|+ +.+++++.+ ++++ .
T Consensus 233 va~npd-~~~~v~S~n-t~R~---~------------------------------------------------------- 252 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSYN-TARF---S------------------------------------------------------- 252 (737)
T ss_pred eeeccc-cceeeeeee-eeee---c-------------------------------------------------------
Confidence 999999 667766653 3331 0
Q ss_pred cccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee-cCCCcCcCcccccccCCccccCC
Q 001363 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW-PRNDLTLSTEATTKVPPRLYQPR 786 (1092)
Q Consensus 708 ~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~-~~~~~~~~~~~~~~~~~~~~~~~ 786 (1092)
....+.|..++||+||..++++...|.+.+=-. +..
T Consensus 253 -----------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~-------------------- 289 (737)
T KOG1524|consen 253 -----------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ-------------------- 289 (737)
T ss_pred -----------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhh--------------------
Confidence 013456788899999999988888887654110 000
Q ss_pred CCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001363 787 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 787 ~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
+ + -+.+=++. ....|.+-|+.++.+ ..-.....+...+++- + +|+++. .
T Consensus 290 ---------l--------~-------~~n~~~t~~~r~~I~vrdV~~~v~--d~LE~p~rv~k~sL~Y--~-hLvvaT-s 339 (737)
T KOG1524|consen 290 ---------L--------V-------SGNLKATSKSRKSITVRDVATGVQ--DILEFPQRVVKFSLGY--G-HLVVAT-S 339 (737)
T ss_pred ---------h--------h-------hccceeEeeccceEEeehhhhhHH--HHhhCccceeeeeece--e-EEEEEe-c
Confidence 0 0 00111111 234566667665543 2222445666666654 3 333333 3
Q ss_pred CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEc
Q 001363 866 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 945 (1092)
Q Consensus 866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 945 (1092)
..|++|.-........+.+....+.-+.-+ ...+++ ....+|.++..+...... ..+++... .....=..|
T Consensus 340 ~qvyiys~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtls 410 (737)
T KOG1524|consen 340 LQVYIYSEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLS 410 (737)
T ss_pred cEEEEEecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeee
Confidence 468888766554444444444333222211 112222 233456666665422111 11111111 011112233
Q ss_pred cCCCEEEE--EeC-CcEEEEEc-CCceeeeeec-cCCCCCEEEEEEe----cCCCEEEEEECCCcEEEEEcCCCceEEee
Q 001363 946 KDQTRFLL--VHE-THLAIYEA-EELTCLKQWF-PISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 946 ~dg~~la~--~~d-~~i~lwd~-~~~~~~~~~~-~~h~~~v~~l~fs----~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
-....|+. ..| ..+.+||. .+|+....-. -.|...|..++.. ++++.++.-...+.+.|=.+.+.....++
T Consensus 411 LandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I 490 (737)
T KOG1524|consen 411 LANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEI 490 (737)
T ss_pred cccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhh
Confidence 33444555 233 45889998 6666543211 2345556555553 35567777766677776665543332222
Q ss_pred ccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1017 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
.-... ....++|+ |...+++|-.|+.+.+|=.+...
T Consensus 491 ~KiGT----------mVhtLawn--dttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 491 YKIGT----------MVHTLAWN--DTTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hhhhh----------hhhhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence 21111 12346677 56789999999999999987644
No 173
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.9e-16 Score=170.05 Aligned_cols=563 Identities=15% Similarity=0.157 Sum_probs=327.8
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC----------CCcEEEEEEeCCC
Q 001363 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDK 465 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d----------~~~l~l~s~~~d~ 465 (1092)
...-.++.|+|.| +||.|+.. .|.+-|..+-+.++ .+.-|...|+.+.|.|- ...++++++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3446778899876 77777665 48888988765555 67789999999999763 2456889999999
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCc--cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCC
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGR 542 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~ 542 (1092)
.|.+||...+..+..+..|..++..++|.+..+. ..|+......++.+|+..+++....+........++.+.| |.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 9999999999999999999999999999876554 4778888889999999999999888877776777788888 444
Q ss_pred EEEEEecCCCCceeEEEEeCC-------CCeEEEEEeeccc----------------cCCc------eEEEEEcCCCCEE
Q 001363 543 RLFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL----------------QHNS------VSVVHFDTAKDQI 593 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~----------------~~~~------v~~~~~~~~~~~l 593 (1092)
.+...+. .+.+.+-+.- .|+..+.-..|.. .... ...++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 4444332 3334443321 1222222222110 0000 1124667876666
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC--CEEEEEeCCCeEEEEECCCCceeeec-----c-cccC
Q 001363 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAA-----G-VLSD 665 (1092)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~-----~-~~~~ 665 (1092)
+-......+.++|++-..++.....+.+. +.-+.+-|++ ..|++...||.+.+|-.+.-...... . ....
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~ 323 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGE 323 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcccccc
Confidence 66667788999999999999888776553 4556666654 57899999999999987642111111 0 0011
Q ss_pred ceeeeeecCCCccccccccCCceeecCCCCCC-CccceeeccccccceeccccccCccccccccCCccccccEEEEEEec
Q 001363 666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 744 (1092)
Q Consensus 666 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 744 (1092)
.+.++. +..... .+.+...|. ...++.--.+|...+|++..+......... ...-+..+.|..
T Consensus 324 Q~~~vr--~m~~~r---------p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-----~iel~~pf~f~~ 387 (1062)
T KOG1912|consen 324 QVHVVR--PMEEFR---------PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-----SIELVLPFDFNL 387 (1062)
T ss_pred ceEEEe--echhcc---------cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc-----cccccccccccC
Confidence 111111 111000 000000122 333444445677778887632211110000 000000111111
Q ss_pred CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCe
Q 001363 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGV 824 (1092)
Q Consensus 745 ~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~ 824 (1092)
... .+.. .. +......+ +|.....+....|-.++-
T Consensus 388 ~~~-----------~v~k-----------------~~---------l~~LS~dg-~h~sGs~~~~~~p~p~~t------- 422 (1062)
T KOG1912|consen 388 STK-----------LVGK-----------------TS---------LISLSDDG-SHSSGSTCVRMRPMPELT------- 422 (1062)
T ss_pred cee-----------ehhh-----------------cc---------ccchhhcC-CCCCCceeeecccCcccc-------
Confidence 000 0000 00 00000000 133333333332211110
Q ss_pred EEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE
Q 001363 825 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 904 (1092)
Q Consensus 825 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~ 904 (1092)
.+...+.+. +....-| ++|.|...|+|.++|+.++..-+.+..|+..|.++.|-.... |++.
T Consensus 423 ------------~~~~~p~~n-~~~~~~p----LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSf 484 (1062)
T KOG1912|consen 423 ------------KVENDPGGN-TPAGTVP----LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSF 484 (1062)
T ss_pred ------------eeecCCCCC-ccceeee----eEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEe
Confidence 011111111 1122233 899999999999999999999999999999999999976544 3333
Q ss_pred e----------CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCceeeeee
Q 001363 905 G----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQW 973 (1092)
Q Consensus 905 s----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~ 973 (1092)
+ .-+.+.|-|+.+|..+..+-++.++. .+|..+..|.-|++|++. .+.-+.+||+.+..+++..
T Consensus 485 sys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de-----spI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~m 559 (1062)
T KOG1912|consen 485 SYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE-----SPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLM 559 (1062)
T ss_pred eeccccccccceeeeEEEEEcccccccccccCCCCCc-----CcceeeeecccCceEEEEecccchHHHhhccchHHHHH
Confidence 2 23457788998876444333333322 479999999999999994 7788999999887776542
Q ss_pred ccCCCCC-EEEEEEe-cC----------------CCEEEEEECCCcEEEEEcCCCceEEe-ecc-ccccCCCCccccccc
Q 001363 974 FPISSVP-ISQATFS-CD----------------CRMVFTSFVDGTLSIHEASNLEVQCR-ILS-TAYLRPTTSCLHVYP 1033 (1092)
Q Consensus 974 ~~~h~~~-v~~l~fs-~d----------------g~~l~t~~~Dg~i~vwd~~~~~~~~~-~~~-~~~~~~~~~~~~v~~ 1033 (1092)
- -.-+ ++.+.|+ |. .+..++.+.|. +++.+.......+ ... ..... .....-
T Consensus 560 S--~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es--~~~~~~~~a~~~sdgsq~~~a~e----sfafal 631 (1062)
T KOG1912|consen 560 S--LALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVES--RIYHITLSALVVSDGSQVNTAWE----SFAFAL 631 (1062)
T ss_pred h--hcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccc--hheehhhhhhhhccccchhhHHH----HHHHHH
Confidence 2 2334 8889998 32 12334333232 3333222111100 000 00000 000112
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1034 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1034 ~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
++++|- +..++.|..+|.+.+||+.-.+
T Consensus 632 ~~mAwk---~d~lv~GD~~GNl~~WDlg~R~ 659 (1062)
T KOG1912|consen 632 CAMAWK---DDILVVGDVEGNLVVWDLGRRQ 659 (1062)
T ss_pred Hhhhcc---CCeeEeecccCceeEEeccccc
Confidence 346666 4799999999999999975443
No 174
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=9.7e-18 Score=170.87 Aligned_cols=254 Identities=13% Similarity=0.179 Sum_probs=185.3
Q ss_pred CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeeccccc------ceeeEeeecCCCCcEEEEEECCC-CCEEEEEeCCC
Q 001363 346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS------MLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKH 418 (1092)
Q Consensus 346 g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~------~~~~~~~l~~h~~~V~~l~~spd-g~~las~~~d~ 418 (1092)
|+ ++|.|+.|..|.|||+.--..+. +..-+.... ..-+.....+|+..|.+++|+.+ ...||+||.|.
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred cc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 55 79999999999999986432221 000000000 00012235589999999999985 56789999999
Q ss_pred EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCC
Q 001363 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 498 (1092)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 498 (1092)
+|++||+.+|++.. ++..|.+.|.+++|+|.... +|++|+.|++|.+.|.+........-...+.|-.++|.+...
T Consensus 267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE 342 (463)
T ss_pred eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc
Confidence 99999999998776 67789999999999998776 899999999999999885333322223567788899987643
Q ss_pred ccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc
Q 001363 499 IHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1092)
Q Consensus 499 ~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1092)
..++++..||+++-+|++.. ++..++..|..+|.++++++.-..+++.+ ..++.|.+|+....... ....|...
T Consensus 343 -~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~---s~d~~Vklw~~~~~~~~-~v~~~~~~ 417 (463)
T KOG0270|consen 343 -NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA---STDKVVKLWKFDVDSPK-SVKEHSFK 417 (463)
T ss_pred -eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec---cccceEEEEeecCCCCc-cccccccc
Confidence 57888899999999999987 67889999999999999998776554443 23778999998644331 12222222
Q ss_pred CCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceE
Q 001363 578 HNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLL 613 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~ 613 (1092)
-+...|.++.|+-..+ +.|+..+.++|||+.+...+
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 3456777888886555 45777788999999876543
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=9.5e-18 Score=167.88 Aligned_cols=239 Identities=15% Similarity=0.182 Sum_probs=179.5
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC-
Q 001363 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD- 407 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd- 407 (1092)
...||+++|..++|+|-....+|+||.|.+|.||++..+....... -....|.||...|-.++|+|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------epvv~L~gH~rrVg~V~wHPtA 143 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------EPVVELYGHQRRVGLVQWHPTA 143 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------cceEEEeecceeEEEEeecccc
Confidence 4579999999999999888899999999999999998765554321 112338899999999999995
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
.+.|++++.|.+|.+||+.+|+.+. ++. |...|.++.|+.||. ++++.+.|+.|+|||..+++.+..-.+|.+.
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 5678899999999999999998665 455 999999999999999 8999999999999999999999888888764
Q ss_pred eE-EEeecccCCccEEEEEe---cCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001363 488 VY-SLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 488 v~-~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
-. .+.| -.++.++.+|. .+..+-+||....+....+. .....|.---|.+|...++.++ .||+.|+.|.
T Consensus 218 k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~G---KGD~~IRYyE 292 (472)
T KOG0303|consen 218 KPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCG---KGDSSIRYFE 292 (472)
T ss_pred CcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEe---cCCcceEEEE
Confidence 32 2223 33556555543 46789999987766543222 2334566667889999999887 4688899999
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCC
Q 001363 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1092)
+........+-..-....+-..+.|.|..
T Consensus 293 it~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 293 ITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred ecCCCceeEEecccccCCccccccccccc
Confidence 87665322211111112355666676653
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=8e-19 Score=191.03 Aligned_cols=284 Identities=19% Similarity=0.293 Sum_probs=220.2
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
+..|.||...|.|+.|...|. ++++|+.|..|+||..+++.++.. +.||.+.|+.++.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~ 242 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSS 242 (1113)
T ss_pred HHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccch
Confidence 466889999999999999998 689999999999999999999876 889999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE---Eec
Q 001363 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FEG 483 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~---~~~ 483 (1092)
+..++|+++.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||..-.-.+.. ++.
T Consensus 243 ~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~ 313 (1113)
T KOG0644|consen 243 NNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKF 313 (1113)
T ss_pred hhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCc
Confidence 99999999999999999999998776 67899999999999993 3688899999999871111111 011
Q ss_pred -CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEEEEecCCCCceeEEEEe
Q 001363 484 -HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 484 -~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd 561 (1092)
...-+.++.| ..++..++|++.|+.-..|.+.-.. .+...+.-+.++.|-. +.+++- .+..+.+|+
T Consensus 314 ~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwn 381 (1113)
T KOG0644|consen 314 TEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWN 381 (1113)
T ss_pred ccccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeee----eeeEeeeee
Confidence 1123344444 4466778999999988888554221 1111222222232322 222222 266788999
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001363 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1092)
+.+|.+.+.+.+|. ..+..+.++|-+..+ .+++.||...|||+-.|.+++..... + ..+....||+||..++..
T Consensus 382 l~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 382 LYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred cccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecC
Confidence 99999999999988 899999999987766 45899999999999999888776633 2 356788999999999999
Q ss_pred eCCCeEEEEECCCCce
Q 001363 641 ANENRIKILETPESNS 656 (1092)
Q Consensus 641 ~~dg~i~iw~~~~~~~ 656 (1092)
..-|.++|.....+..
T Consensus 457 d~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 457 DDHGQLYILGTGQSKS 472 (1113)
T ss_pred CCCCceEEeccCCCcc
Confidence 8889999988776543
No 177
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=5.1e-16 Score=161.26 Aligned_cols=498 Identities=12% Similarity=0.175 Sum_probs=286.3
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEE-ecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLW-DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iw-d~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
.|+.-|.|+.|+.+.. ++.+++ |..+.+| |+.+.+.. ....+ ..|.. ...|-.+- +..=-.....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~-~~~~p--------~df~p--t~~h~~~r-s~~~g~~~d~ 77 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVE-VAKLP--------DDFVP--TDMHLGGR-SSGGGKGSDT 77 (737)
T ss_pred ccceeEEeecccccce-EEEecc-CceEEEeecccchhhh-hhhCC--------cccCC--cccccccc-ccCCCCCcce
Confidence 5667788999999987 555544 4555555 44433221 11110 00000 00010000 0000012357
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1092)
++.++.||.+.|-+-... .-+ ...+|.+.|.+-.|+|||. -|++++.||.|++|. ++|-...++.....+|.|
T Consensus 78 ~~i~s~DGkf~il~k~~r-VE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSAR-VER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC 150 (737)
T ss_pred EEEEcCCceEEEecccch-hhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence 888889998888775442 122 4678999999999999999 799999999999999 788766666667889999
Q ss_pred EeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001363 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1092)
++|.|+.+ ..+++. .+.+.+=-+........+..|.+-|.++.|++..+.+++++. +-...+||.. |..+..
T Consensus 151 ~~W~p~S~-~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~ 222 (737)
T KOG1524|consen 151 ARWAPNSN-SIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFT 222 (737)
T ss_pred EEECCCCC-ceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Cccccc
Confidence 99987654 344443 355666666777778889999999999999999999999986 6779999965 455555
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 650 (1092)
-..|. .+|++++|+|+ +.++.++. +++| +..+ ....|..++||+||..+++|+..|.+.+=.
T Consensus 223 S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 223 SAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred CChhc---cceeeeeeccc-cceeeeee-eeee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEee
Confidence 55555 89999999999 55555554 3344 2211 234588999999999999999998876533
Q ss_pred CCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCC
Q 001363 651 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 730 (1092)
Q Consensus 651 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~ 730 (1092)
.-..+... +..-++......|.+-|+..+ .+..+.+|
T Consensus 285 ~ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~~---v~d~LE~p- 321 (737)
T KOG1524|consen 285 AIEQQLVS---------------------------------------GNLKATSKSRKSITVRDVATG---VQDILEFP- 321 (737)
T ss_pred eehhhhhh---------------------------------------ccceeEeeccceEEeehhhhh---HHHHhhCc-
Confidence 22221110 111112222222333332211 11222222
Q ss_pred ccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001363 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
..+..... .-..|+++.+. .+++|.-. -|++. ..++. .+..+.-+.
T Consensus 322 ----~rv~k~sL--~Y~hLvvaTs~-qvyiys~k-----------------nwntp-----iiidg----re~tr~lie- 367 (737)
T KOG1524|consen 322 ----QRVVKFSL--GYGHLVVATSL-QVYIYSEK-----------------NWNTP-----IIIDG----REDTRNLIE- 367 (737)
T ss_pred ----cceeeeee--ceeEEEEEecc-EEEEEecC-----------------CccCc-----EEEec----cccchhHhh-
Confidence 23333332 22334444333 45554311 12211 01000 000000000
Q ss_pred ecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCC-----eEEEEEcCCCCCEEEEE--eCCCcEEEEEc-CCceeeEe-
Q 001363 811 SKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVISK- 881 (1092)
Q Consensus 811 s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg--~~dg~v~iwd~-~~~~~~~~- 881 (1092)
...+++......++.+|..+ |+.....+.+... -..+.+. ...|+.- .....+.+||. .+|+....
T Consensus 368 -q~ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa---ndtLaird~ad~kvlhlFd~istgk~qgDg 442 (737)
T KOG1524|consen 368 -QGEKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA---NDTLAIRDNADPKVLHLFDLISTGKRQGDG 442 (737)
T ss_pred -hhhhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeecc---cceEEeecCCCCeeEEeccCCCCCcccCCc
Confidence 01123333333556676654 3222222211111 1233333 2244432 23346788998 77765422
Q ss_pred -eccccCCeEEEEEc----CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeC
Q 001363 882 -LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956 (1092)
Q Consensus 882 -l~~h~~~V~~l~~s----pdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d 956 (1092)
+-.|...|..++.. ++.+.++.....+.+.|=.+++-... +.....+..|..++|+..-+.|+--.|
T Consensus 443 k~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgke--------e~I~KiGTmVhtLawndttNiLcglqD 514 (737)
T KOG1524|consen 443 KSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKE--------EEIYKIGTMVHTLAWNDTTNILCGLQD 514 (737)
T ss_pred cccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCch--------hhhhhhhhhhhhhhhccccceeeeecc
Confidence 12366667666664 45577888888888888777652111 111112235889999999998888899
Q ss_pred CcEEEEEcCC
Q 001363 957 THLAIYEAEE 966 (1092)
Q Consensus 957 ~~i~lwd~~~ 966 (1092)
+.+.||-..+
T Consensus 515 t~fsVWy~pn 524 (737)
T KOG1524|consen 515 TCFSVWYYPN 524 (737)
T ss_pred ceEEEEEcCC
Confidence 9999998754
No 178
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.1e-18 Score=193.89 Aligned_cols=251 Identities=14% Similarity=0.160 Sum_probs=197.1
Q ss_pred CceEEeecCCCce---EEEEEcCCCcEEEEecCCC---CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001363 336 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 336 ~V~~v~~spdg~~---llasg~~dg~i~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
.-..++|.+.|.. ++|.|..||.|.+||...- ..... ......|++.|..+.|++.+.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~----------------la~~~~h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV----------------LATKSKHTGPVLGLDFNPFQG 129 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH----------------HhhhcccCCceeeeeccccCC
Confidence 6678999888775 6899999999999998752 11110 011556999999999999655
Q ss_pred -EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc--
Q 001363 410 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-- 486 (1092)
Q Consensus 410 -~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-- 486 (1092)
+||+|+.||.|.|||+..-+.-.... -....+.|.+++|+..-.. +|++++.+|.+.|||++..+.+-.+..+..
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999999999999998743222110 1124567999999987766 899999999999999999988877766554
Q ss_pred CeEEEeecccCCccEEEEEecCC--eEEEEEcCCCCc-eEEecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeC
Q 001363 487 PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
.+..+.|+|+...+++++...|+ .|.+||++.... ..++..|...|.++.|++.+ ++|++++. |+.|.+|+.
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~ 283 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNP 283 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecC
Confidence 46788999886654444444444 499999986554 45678999999999999977 77888875 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 611 (1092)
++++.+..+.... +.+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 284 ~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 284 NTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999998755 8899999999887 66778999999999987654
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=2.1e-17 Score=156.73 Aligned_cols=289 Identities=17% Similarity=0.227 Sum_probs=200.6
Q ss_pred CcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeec-CCCCcEEE
Q 001363 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR 401 (1092)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~-~h~~~V~~ 401 (1092)
|......|++|...|+++.|-.+++ |.+|..-|.|++|++.+...+.. +. .|...|+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~ 61 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN 61 (323)
T ss_pred CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence 4455678889999999999999986 68899999999999998776543 33 36788999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC-cEEEEEC--------
Q 001363 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-TIKVWDA-------- 472 (1092)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~-~i~vwd~-------- 472 (1092)
+.--|+ ..|.+-+.|..+.+|++..+..+ ..|.-.++++-|.+-. ++..+... ..-.++-
T Consensus 62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfS----l~~~~k~~eqll~yp~rgsde~h~ 130 (323)
T KOG0322|consen 62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFS----LVKKPKNSEQLLEYPSRGSDETHK 130 (323)
T ss_pred eeecCC-cchhhcCCCceEEEEEccCcceE------EEeeeeccccccccce----eccCCCcchhheecCCcccchhhh
Confidence 998887 56777889999999999875432 2455566666665531 22221111 1111111
Q ss_pred -CCCceeEEE------ecCCcCeEEEeecccC-CccEEEEEecCCeEEEEEcCCCCceE----------EecCCCCceEE
Q 001363 473 -VTGSRTYSF------EGHGAPVYSLCPHAKE-NIHFIFSISVDGKIKAWLYDSLGARV----------DYDAPGLGCTR 534 (1092)
Q Consensus 473 -~~~~~~~~~------~~~~~~v~~i~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~----------~~~~~~~~i~~ 534 (1092)
+-+...+.. .+..+.+.+..+.... ..-++++|..+|.+.+||+.++.... ....|..++.+
T Consensus 131 ~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls 210 (323)
T KOG0322|consen 131 QDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS 210 (323)
T ss_pred hccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCccee
Confidence 111111111 1123445544432221 22357788899999999999874333 34556778999
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCC--CeEE-EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESE--GAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~--~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
+.+.+.-..=++++. ...+..|+++. +.+. +... ...+..|..+.+-||++.+++++.|+.||||+.++.+
T Consensus 211 ldyas~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~--~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~ 284 (323)
T KOG0322|consen 211 LDYASSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEI--TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN 284 (323)
T ss_pred eeechhhcCCcCCCc----cccceeeeeccccCcccccceE--EecCCCccceEEccCCcEEeecccCCcEEEEEeccCC
Confidence 998876555555554 33466666643 3321 1111 1123568889999999999999999999999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
++..+..|. ..|++++|+|+..++|.++.|+.|.+|++
T Consensus 285 pLAVLkyHs--agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 PLAVLKYHS--AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred chhhhhhhh--cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999886 46999999999999999999999999986
No 180
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.6e-18 Score=173.28 Aligned_cols=302 Identities=16% Similarity=0.235 Sum_probs=234.9
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+...|.+|.+.|..|.|...|. +|++|+.|..|.+||+.++..... +..||...|..-.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKF 193 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKF 193 (559)
T ss_pred hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhc
Confidence 44567899999999999999998 799999999999999999887653 25679999988889
Q ss_pred CC--CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-
Q 001363 405 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 481 (1092)
Q Consensus 405 sp--dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~- 481 (1092)
-| +.+.|++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|+.++.....+
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence 88 5678999999999998877544444434467789999999999999887 7999999999999999887654433
Q ss_pred --ecCCc---CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce------EEe------cCCCCceEEEEEccCCCEE
Q 001363 482 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 482 --~~~~~---~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~------~~~~~~i~~~~~s~dg~~l 544 (1092)
..+.. ...+++..|.. ...+++++.|..+++||.+..... ..+ ......|++++|+.++.-|
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeccCCccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 22333 45677776653 358999999999999998653322 111 1223479999999877766
Q ss_pred EEEecCCCCceeEEEEeCCCCe------------E-EEEEeeccccCCceEEEE-EcCCCCEEEEEeCCCcEEEEECCCC
Q 001363 545 FSCGTSKEGESFLVEWNESEGA------------I-KRTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~------------~-~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
++... +..|+++....+. . .+.++||... ..|..+. |.|...++++|+.-|.|.||+-.++
T Consensus 352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence 66554 4458888554322 2 2347888722 3477764 5788899999999999999999999
Q ss_pred ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
+.+..+.+..+ .|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99999887766 5899999999999999999999999987544
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.5e-17 Score=174.58 Aligned_cols=262 Identities=15% Similarity=0.196 Sum_probs=196.5
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc-----CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
.+..|...|++++|.|-...|++++.||++++|+++ ....+.++.++.+|.++|.|+++.++++ .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477799999999999999999999999999999993 3344667889999999999999999999 799999999
Q ss_pred cEEEEECC------CC----ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--ceE
Q 001363 466 TIKVWDAV------TG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCT 533 (1092)
Q Consensus 466 ~i~vwd~~------~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~ 533 (1092)
+|+.|++. .. .....+.||.+.|+.++++..+ ..|++++.||+++.|+...... .++..... -..
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999543 11 2345778999999999998766 4799999999999998766555 33322222 223
Q ss_pred EEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001363 534 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 534 ~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++.+.... ...++... .+.-.+.+...+..+..+..... ....+..+..+|.+...+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44443322 11222111 11223344444444444432221 12457778899999999999999999999999
Q ss_pred CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccc
Q 001363 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 663 (1092)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 663 (1092)
++..+.....+ ...+.++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 520 ~~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 520 TGKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ccccchheeec--cceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999888766 446899999999999999999999999999877666554433
No 182
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=8.1e-17 Score=160.41 Aligned_cols=302 Identities=12% Similarity=0.110 Sum_probs=214.8
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEE-eeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
+..-+.+|.+.|.++.||.+|+ +||+|+.|..++||+++.--..++ +.+. ..-..|...|.|++|
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~-------------~~~~~H~SNIF~L~F 113 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIG-------------VMEHPHRSNIFSLEF 113 (609)
T ss_pred hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCce-------------eccCccccceEEEEE
Confidence 4466889999999999999997 799999999999999875322221 1111 012346789999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-ee--EEE
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RT--YSF 481 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~--~~~ 481 (1092)
....++|.+|..+++|..-|+++.+.+... .-....+.|..+..+|... .+++.+.++.|.+||..... .. ..+
T Consensus 114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~ 190 (609)
T KOG4227|consen 114 DLENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLP 190 (609)
T ss_pred ccCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeee
Confidence 999999999999999999999997655421 1112334899999999987 79999999999999987654 22 222
Q ss_pred ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-------ecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
........++.|+|.. -.+|++.+..+-+-+||.+....... +........++.|+|.|+.+.+.-. .
T Consensus 191 AN~~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~ 265 (609)
T KOG4227|consen 191 ANSGKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----G 265 (609)
T ss_pred cCCCccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----c
Confidence 2233456677787753 36888999999999999987654321 1111223467889999999887643 2
Q ss_pred eeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------------------
Q 001363 555 SFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------------------- 610 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-------------------- 610 (1092)
..-.+||..+..+...-..|.. ....+.+++|..+. .+++|+.+-.|++|.+...
T Consensus 266 ~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 266 KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 2345677766554332222221 11346778887664 4899999999999987531
Q ss_pred ---ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 611 ---QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 611 ---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
..+..+.+| ...++.+.|+|...+|++.+-...++||.-.
T Consensus 345 ~i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 FIEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 122334444 4457899999999999999999999999754
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=1.3e-16 Score=153.17 Aligned_cols=260 Identities=17% Similarity=0.223 Sum_probs=186.4
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCC-------CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~d-------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
.+|..|.++|+.++-+|-.+++|+++..+ ..+.||.+........ .. .......+-+.+-+.|.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~-------tlE~v~~Ldteavg~i~ 127 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SS-------TLECVASLDTEAVGKIN 127 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cc-------hhhHhhcCCHHHhCcee
Confidence 55678899999999999988899987653 2367887754321100 00 00000111224566999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceE---EEcccccceeEEEEec--CCCcEEEEEEeCCCcEEEEECCCC
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
|+.|.|++..||+-. |..|.+|++..+..+.... .-.+|....++-+|+| ||. .+++.+ |+++..||+++.
T Consensus 128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTM 203 (370)
T ss_pred eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccch
Confidence 999999999999875 7779999999876521110 1123566788999999 666 455544 899999999998
Q ss_pred ceeEEE-ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEccCCCEEE-EEecCCC
Q 001363 476 SRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLF-SCGTSKE 552 (1092)
Q Consensus 476 ~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~-~~~~~~~ 552 (1092)
++...+ ..|...|..+.|+|.. ..+|++++.||.|++||.+..+ ++..+..|.+.+.++.|+|.-..|+ +++.
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S--- 279 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS--- 279 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC---
Confidence 887777 5688899999998864 3689999999999999998755 4668899999999999999765554 4443
Q ss_pred CceeEEEEeCCCCe-----------------------------EEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCcE
Q 001363 553 GESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVI 602 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i 602 (1092)
+..|.+|...+-. .+.++..|. +.|++++|+....++++ -+.||.+
T Consensus 280 -Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 280 -DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred -CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceE
Confidence 5557777432211 123444555 89999999988887654 7899998
Q ss_pred EEEECC
Q 001363 603 KIWDMN 608 (1092)
Q Consensus 603 ~iwd~~ 608 (1092)
.|=.+.
T Consensus 356 iIs~V~ 361 (370)
T KOG1007|consen 356 IISSVP 361 (370)
T ss_pred EeecCC
Confidence 876554
No 184
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=7.2e-16 Score=150.71 Aligned_cols=327 Identities=14% Similarity=0.208 Sum_probs=223.8
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceE
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL 613 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~ 613 (1092)
.+|||+|+++++++ +..+.+-|..+-+..+.+... +.|..+.|..|..++++ ...++.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 68999999999997 345888888887776666553 36778889999888877 568889999999988887
Q ss_pred EEEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecC
Q 001363 614 TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1092)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1092)
..+... ..++..++|||||+.+... ..+-.|.+|.+.+..... +.-....+..++|+|+
T Consensus 85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~d----------------- 144 (447)
T KOG4497|consen 85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPD----------------- 144 (447)
T ss_pred EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCC-----------------
Confidence 777644 4568999999999766554 458899999998875443 3333444566777654
Q ss_pred CCCCCCccceeeccccc---cc-----eeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC--CeeEEEe
Q 001363 693 DPKEDVKPEISVEAENK---SE-----VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWR 762 (1092)
Q Consensus 693 ~~s~d~~~l~s~~~d~~---i~-----lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~~w~ 762 (1092)
|++.+..+.... +. -|.+-. ......-..+.+.|+|||..+++-..- -.+..|+
T Consensus 145 -----g~f~ai~sRrDCkdyv~i~~c~~W~ll~-----------~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe 208 (447)
T KOG4497|consen 145 -----GQFCAILSRRDCKDYVQISSCKAWILLK-----------EFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE 208 (447)
T ss_pred -----CceeeeeecccHHHHHHHHhhHHHHHHH-----------hcCCCcccccCceECCCCcEEEEecchhhheeeeee
Confidence 444444333211 11 122110 001123445678899998866544332 1111111
Q ss_pred ecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee-----
Q 001363 763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI----- 836 (1092)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~----- 836 (1092)
-.-.+..++++|.++++++|+ |+.+|+.+--+.+..
T Consensus 209 --------------------------------------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflh 250 (447)
T KOG4497|consen 209 --------------------------------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLH 250 (447)
T ss_pred --------------------------------------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhcc
Confidence 234577888999999999887 777777653222111
Q ss_pred -------------------------------------------------------EEec------CCCCCeEEEEEcCCC
Q 001363 837 -------------------------------------------------------LTIM------PPSPTATSLAFNPHD 855 (1092)
Q Consensus 837 -------------------------------------------------------~~~~------~~~~~i~~l~~s~~d 855 (1092)
..++ .+...+.-++||+ |
T Consensus 251 l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-D 329 (447)
T KOG4497|consen 251 LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-D 329 (447)
T ss_pred chhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-C
Confidence 1111 1223567789999 8
Q ss_pred CCEEEEEeCC--CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc
Q 001363 856 NNVIAIGMDD--STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 933 (1092)
Q Consensus 856 ~~~lasg~~d--g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 933 (1092)
..++|+-.+. ..+.+||++.-+....+. ...+|....|.|....|+.+.....+++|.... ..++..+....
T Consensus 330 s~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg-----~~~V~vP~~GF 403 (447)
T KOG4497|consen 330 STYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG-----PRVVGVPKKGF 403 (447)
T ss_pred ceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC-----ceEEecCCCCc
Confidence 9888876543 489999999877666665 567899999999999999888878899999887 34555554444
Q ss_pred CCCCCceEEEEccCCCEEEEEe
Q 001363 934 TLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 934 ~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
.|..+.|.-+|..++..+
T Consensus 404 ----~i~~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 404 ----NIQKLQWLQPGEFIVLCG 421 (447)
T ss_pred ----eeeeEEecCCCcEEEEEc
Confidence 499999999999988843
No 185
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.1e-16 Score=166.56 Aligned_cols=246 Identities=17% Similarity=0.160 Sum_probs=163.3
Q ss_pred EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcCeEEEeecccCCccEEEEEecCCeEEE
Q 001363 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 513 (1092)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~v 513 (1092)
.++.||++.|+|++|+.||. +|++|+.|-.+.|||.-..+.++.+ .||.+.|.++.|.|..+..++++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 36889999999999999999 8999999999999999988888887 68999999999999999999999999999999
Q ss_pred EEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CE
Q 001363 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQ 592 (1092)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 592 (1092)
+|+...+.... +.. ..+....+..|. ..|..++..|++ +.
T Consensus 122 fdl~~~~~~~~-------------------------d~~-----------~~~~~~~~~cht---~rVKria~~p~~Pht 162 (758)
T KOG1310|consen 122 FDLDSSKEGGM-------------------------DHG-----------MEETTRCWSCHT---DRVKRIATAPNGPHT 162 (758)
T ss_pred Eeccccccccc-------------------------ccC-----------ccchhhhhhhhh---hhhhheecCCCCCce
Confidence 99875332110 000 011122233344 677788888888 77
Q ss_pred EEEEeCCCcEEEEECCCCceEE-E-------EeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEEEECCCC-ceeeecc-
Q 001363 593 ILAAGDDHVIKIWDMNKVQLLT-T-------IDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAAG- 661 (1092)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~-~-------~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~- 661 (1092)
+.++++||+++-+|++....-. . .......-...++..+| +..+|++|+.|-..++||.... +.+..-.
T Consensus 163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~ 242 (758)
T KOG1310|consen 163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT 242 (758)
T ss_pred EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence 8899999999999998632110 0 01111122456889998 5678999999999999994321 1111100
Q ss_pred ---cccCceeeee-ecCCCccccccccC------CceeecCCCCCCCccceeeccccccceeccccccCccccc
Q 001363 662 ---VLSDNLRKLS-VNPISTVTGAGIAN------GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1092)
Q Consensus 662 ---~~~~~v~~~~-~~~~~~~~~~~~~~------~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~ 725 (1092)
.......|+. |+|......-+... ..+.| +|+|.-++..-....|.++++...+......
T Consensus 243 ~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 243 MNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred ccCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 0011111222 22222211111111 12334 6778777777666778888877655443333
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.9e-15 Score=141.63 Aligned_cols=286 Identities=13% Similarity=0.140 Sum_probs=197.5
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
.|.+-+++|.+++++++..+|.|-+..+..-.. +... +.....+. +.++|..++..++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa~---------~~gk~~iv----~eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSAE---------PPGKLKIV----PEQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---cccC---------CCCCccee----eccccCCCeeeeeee--hh
Confidence 345567899999999999999999998764321 1110 01111111 123599999999998 46
Q ss_pred EEEEEeCCeEEEEEcCCcee------eEEe-------cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee
Q 001363 816 YLFSASGGVISLYIVMTFKT------ILTI-------MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 816 ~l~~~sdg~i~iwd~~~~~~------~~~~-------~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
+|++++||.|+-|....... +... ...-.+|+++-+.|..+ -++.++.|+.++-||+++|+....+
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEEE
Confidence 88889999999998754322 1111 11235789999999444 4455558999999999999999999
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC----CCCCceEEEEccCCCEEEEEeCCc
Q 001363 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT----LAPSETHIQFHKDQTRFLLVHETH 958 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~l~~s~dg~~la~~~d~~ 958 (1092)
+||++.|.+++--.....+.||++||+++|||.++++... .+...+.... ...+| .+..-+..+|++|....
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~ 228 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK 228 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence 9999999999986666788999999999999999976444 2222222111 11223 45556778999988889
Q ss_pred EEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEE
Q 001363 959 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1038 (1092)
Q Consensus 959 i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1038 (1092)
+.+|.+.+.++...+. -..+|..+.|-.| .+++++..++|.-|.+. |.+..... .. +...++.+...
T Consensus 229 lslwhLrsse~t~vfp--ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~--s~~c~s~s~~~ 295 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFP--IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP------VE--STACYSASWQT 295 (325)
T ss_pred eeEEeccCCCceEEEe--cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc------CC--ccceeeecccC
Confidence 9999999988887643 3567888888644 67788888899999876 33332222 11 22234444555
Q ss_pred CCCCCCEEEEEeCCCcEEEEe
Q 001363 1039 HPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1039 ~p~d~~~l~~~~~dg~v~~w~ 1059 (1092)
+| -..+-.++..+.+.++.
T Consensus 296 ~p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 296 SP--IKFISIAGFSNKLHILK 314 (325)
T ss_pred Cc--eEEEEecccceeeeeee
Confidence 66 35666677777777653
No 187
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.4e-17 Score=172.07 Aligned_cols=271 Identities=14% Similarity=0.194 Sum_probs=192.8
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
...+|.-|.+.|..++|+|-.. .|++++.||++.+|+++....-....+ -+...+.+|.++|.|++++
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~-----------epi~tfraH~gPVl~v~v~ 353 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDV-----------EPILTFRAHEGPVLCVVVP 353 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccce-----------eeeEEEecccCceEEEEec
Confidence 3458889999999999999987 799999999999999943211111010 1112378999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCC-------cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 406 PDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
++++.+.+|+.||+|+.|++.... .......+.||++.|+.+++|+... .|++|+.||+++.|+......
T Consensus 354 ~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~- 430 (577)
T KOG0642|consen 354 SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP- 430 (577)
T ss_pred CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-
Confidence 999999999999999999664211 1112235779999999999999888 699999999999999766655
Q ss_pred EEEecCC--cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEccCCCEEEEEec
Q 001363 479 YSFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 479 ~~~~~~~--~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
.+|.... +.-.++.+..+.- ...++...-+.-.+.++........+... ...+..+...|.+...+++..
T Consensus 431 ~~f~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he 509 (577)
T KOG0642|consen 431 CTFGEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE 509 (577)
T ss_pred cccCCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc
Confidence 3332221 2223343321110 11222222222233333333333332221 124667788888888888875
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
+..|+++|..++..+.....|. ..++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus 510 ----d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 ----DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ----CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 6679999999999999998888 89999999999999999999999999999877776655443
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=8e-17 Score=158.76 Aligned_cols=292 Identities=13% Similarity=0.172 Sum_probs=203.6
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCC-CceE
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APG-LGCT 533 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~-~~i~ 533 (1092)
.++++-..|.|++||..+++.+..|+++...++.+.|......+.+.+++.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 6788888999999999999999999999999999999875566789999999999999999877655433 333 3566
Q ss_pred EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE-EEEEe-eccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 001363 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQ-GLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~ 610 (1092)
+++..-.++.++++..-...+..|.+||.+..+. ++.+. .|. +.|+++.|+|.. +.|++||.||-|.+||++..
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 6666667888888776666678899999998776 55443 344 899999999975 67889999999999999764
Q ss_pred c----eEEEEeCCCCCCCCceEEEccCC-CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccC
Q 001363 611 Q----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1092)
Q Consensus 611 ~----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 685 (1092)
. ++.++. ....|..+.|..++ +.+.+.+..++..+|++..+.....+....-..... .. -..
T Consensus 199 ~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~-r~---------~~~ 265 (376)
T KOG1188|consen 199 NEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL-RK---------EDN 265 (376)
T ss_pred cchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH-Hh---------hhh
Confidence 2 223332 23458899999876 458888999999999999886444333211100000 00 000
Q ss_pred CceeecCCCCCCCccceeecc-ccccceeccccccCc-cccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001363 686 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 686 ~~~~~~~~~s~d~~~l~s~~~-d~~i~lw~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~ 763 (1092)
....++.....++...+.++. .++..++-+....+. ..........+|..-|.++.|...+..+.+++.||.+.+|..
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 011112221234444444444 566666654422121 122233344557777888899989999999999999999985
Q ss_pred c
Q 001363 764 P 764 (1092)
Q Consensus 764 ~ 764 (1092)
+
T Consensus 346 ~ 346 (376)
T KOG1188|consen 346 E 346 (376)
T ss_pred C
Confidence 3
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.9e-16 Score=154.92 Aligned_cols=294 Identities=11% Similarity=0.073 Sum_probs=209.4
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC---cccceEEE-cccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~---~~~~~~~~-~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
+.+|.+.|.++.||.++++||+|+.|..+++|+++.-- ..+.+... ..|...|.|++|....+ .+.+|+.+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCccee
Confidence 67899999999999999999999999999999986321 11112111 23567899999998887 89999999999
Q ss_pred EEEECCCCceeEEEec--CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccCCC
Q 001363 468 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~dg~ 542 (1092)
...|+++.+.+..+.. ..+.|+.+..+|. ...|++.+.+|.|.+||.+.... ............++.|+|-..
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999999988752 2348999988876 36899999999999999986552 333444455778899999887
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEE-E---EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 543 RLFSCGTSKEGESFLVEWNESEGAIK-R---TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
.|+....... -+-+||.+..... . .+.+.......-..+.|+|+|+++++.-....-.+||+.+.++......
T Consensus 208 ~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 208 ALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred eeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 7666554333 3788998754321 1 1222221112335678999999999877666667788877544322222
Q ss_pred CC-----CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-----------------------ceeeecccccCceeee
Q 001363 619 GG-----GLPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLRKL 670 (1092)
Q Consensus 619 ~~-----~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-----------------------~~~~~~~~~~~~v~~~ 670 (1092)
|. ....+.+++|-.|- .+++|+++-.|++|.+... ..+..+++|..-+..+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 21 12235677886554 4999999999999998732 1234455565555555
Q ss_pred eecCCCccccccccCCceeecCCCCCCCccceeeccccccceecc
Q 001363 671 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~ 715 (1092)
.|+ |...++++.+-++.+++|.-
T Consensus 364 RF~----------------------~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 364 RFS----------------------QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eec----------------------CCcceEeccchhhheecccc
Confidence 554 55677888888899999973
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=1.4e-14 Score=160.03 Aligned_cols=198 Identities=12% Similarity=0.140 Sum_probs=127.8
Q ss_pred eEEEEecCCCEEEEEe--CCeEEEEEcCC-c---eeeEEecCCCCCeEEEEEcCCCCCEEE-EEeCCCcEEEEEcCCcee
Q 001363 806 PCFALSKNDAYLFSAS--GGVISLYIVMT-F---KTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~---~~~~~~~~~~~~i~~l~~s~~d~~~la-sg~~dg~v~iwd~~~~~~ 878 (1092)
..++++|+++++++++ ++.|.+|++.+ + +.+..+. +.....+++++| ++++++ +...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence 4566777777766665 46677777753 2 1222222 223466788999 777775 455669999999986332
Q ss_pred eE-------eeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEccCC
Q 001363 879 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 879 ~~-------~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
+. .... ......++|+|||++++++.. +++|.+|+++. ++......+...............+.|+|||
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 1111 234678999999999988876 89999999984 3322222222211111111134468999999
Q ss_pred CEEEEE--eCCcEEEEEcCCce----eeeeeccCCCCCEEEEEEecCCCEEEEEEC-CCcEEEEEcC
Q 001363 949 TRFLLV--HETHLAIYEAEELT----CLKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS 1008 (1092)
Q Consensus 949 ~~la~~--~d~~i~lwd~~~~~----~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~-Dg~i~vwd~~ 1008 (1092)
++++++ .++.|.+|++.... .+..... ......+.|+|||++|+++.. +++|.+|+++
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999986 45789999986432 2222111 124557899999999998775 8999999875
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.2e-15 Score=141.19 Aligned_cols=281 Identities=16% Similarity=0.198 Sum_probs=192.7
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.|.+-+++|.++ +|+.|..+|+|.+..+.+-..-.. ......+.....+|.++|..++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 567778999998 689999999999998864211000 000011111246899999999998 55777775
Q ss_pred CCCEEEEEEccCCCc---ccceEE--Ecccc-----cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001363 416 SKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~---~~~~~~--~~~h~-----~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
||.|+=|.+..... .+...+ ...|. -.|+++...|... -++.++.|+.++.||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 49999998864332 111111 11222 2588999998777 46666689999999999999999999999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC----------ceEEEEEccCCCEEEEEecCCCCce
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----------GCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
+.|.++.-.. ....+++|+.||++|+||.++.+....+..... .| .+..-+..++++++. .
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgG-----p 227 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGG-----P 227 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCC-----C
Confidence 9999987632 224789999999999999999988776543221 34 344556778988863 3
Q ss_pred eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC-C
Q 001363 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-G 634 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~ 634 (1092)
.+.+|++++.+....+.-. ..+..+.|.. ..++++++.+.|.-|.+. |.+....+...+ ...+..++.. -
T Consensus 228 ~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPI 298 (325)
T ss_pred ceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCce
Confidence 4899999999988888763 4777888864 568888888889989874 444444443322 2344444432 2
Q ss_pred CEEEEEeCCCeEEEE
Q 001363 635 TLLAVIANENRIKIL 649 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw 649 (1092)
+++-.++....+.|+
T Consensus 299 k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 299 KFISIAGFSNKLHIL 313 (325)
T ss_pred EEEEecccceeeeee
Confidence 344455555666554
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=1.8e-15 Score=145.72 Aligned_cols=292 Identities=18% Similarity=0.251 Sum_probs=206.7
Q ss_pred eeecccCCCCceEEeec--CCCceEEEEEcC----CCcEEEEec--CCCCeeEEeeeeeeecccccceeeEeeecCCCCc
Q 001363 327 AQTLIEGSSSPMSMDFH--PVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~s--pdg~~llasg~~----dg~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~ 398 (1092)
+..+..+- .+.++.|| |+.+..||.|+. .+.|.|-.+ ++++.+...+ ..|.-+
T Consensus 38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP 98 (364)
T KOG0290|consen 38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP 98 (364)
T ss_pred EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence 55566665 78889998 666677899985 245555444 4455444322 248899
Q ss_pred EEEEEECCCCC-----EEEEEeCCCEEEEEEccCCCc-ccceEE-----EcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 399 VNRVVWSPDGS-----LLGVAYSKHIVQLYAYHGGSD-ARQQLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 399 V~~l~~spdg~-----~las~~~d~~i~iwd~~~~~~-~~~~~~-----~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
++.+-|.||.+ +||+++ | .+++|.+...+. +..... -..+..++++..|+.-... ++.+++-|-+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 99999999873 566653 3 499999984221 111111 1246678999999886655 89999999999
Q ss_pred EEEECCCCce---eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCC--CCceEEEEEccCC
Q 001363 468 KVWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAP--GLGCTRMAYSANG 541 (1092)
Q Consensus 468 ~vwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~--~~~i~~~~~s~dg 541 (1092)
.|||+++|.. ...+-.|...|..++|.. +.-+.+++.+.||.+|++|++..+.-. .++.+ ..+...++|++..
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999999733 456778999999999975 344799999999999999999866433 33333 3477888888854
Q ss_pred -CEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceE---EE
Q 001363 542 -RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLL---TT 615 (1092)
Q Consensus 542 -~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~---~~ 615 (1092)
+++++...+ ...|.+.|++. ...+..+++|. ..|+.++|.|.. ..+.+++.|..+.+||+...-.. ..
T Consensus 255 pnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 255 PNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred chHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 566665543 34588999885 45678888888 999999999974 67888999999999999753220 00
Q ss_pred EeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEE
Q 001363 616 IDAGGGLPENPRICFNK-NGTLLAVIANENRIKI 648 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 648 (1092)
+-.-.....|+.+.|++ .+..++++.. +.+.+
T Consensus 329 ilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 329 ILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 00111234689999996 6778887765 34444
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=2e-14 Score=143.73 Aligned_cols=242 Identities=11% Similarity=0.147 Sum_probs=187.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
...+..+.|..|...|..|+.|| -++|..+...... ........|.-+-|+.. .+.+|+...-..+++.+.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence 34677788999999999999999 7888887643211 11122335666667654 213344433345999999988
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC---CCceEEEEEccCCCEEEEEecCCC
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
..+..+. ...+|.++.++. ++|+++-.+. |.|||+++.+...++... ...+.++++++.+.+++.-+...
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t- 151 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT- 151 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-
Confidence 8887775 566788888743 4676666555 999999999888766543 33566666777777888765422
Q ss_pred CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
.+.|++||..+-+.+..+..|. +.+.+++|+++|.+++++|+.|+ |||+.+.+|+.+..+........|.+++|+
T Consensus 152 -~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 152 -SGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 5669999999999999999888 99999999999999999999887 799999999999999866555678999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCC
Q 001363 632 KNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
|++++|++.++.++|.+|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998854
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.8e-16 Score=154.06 Aligned_cols=276 Identities=15% Similarity=0.173 Sum_probs=193.1
Q ss_pred EEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEEcc
Q 001363 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH 426 (1092)
Q Consensus 349 llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~las~~~d~~i~iwd~~ 426 (1092)
.+|++-..|+|++||..+|+.+.. +++|...++.++|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 578888889999999999988875 667888888999987 46788999999999999999
Q ss_pred CCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEe----CCCcEEEEECCCCce-eEEE-ecCCcCeEEEeecccCCc
Q 001363 427 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI 499 (1092)
Q Consensus 427 ~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~----~d~~i~vwd~~~~~~-~~~~-~~~~~~v~~i~~~~~~~~ 499 (1092)
+......+ .+.+|. .+..+++.+-.++ ++++|. .|-.|.+||++..+. +..+ ..|...|++++|+|+ +.
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DP 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CC
Confidence 87655443 455666 4667777665666 566664 466799999998766 5444 679999999999997 45
Q ss_pred cEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 500 HFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
.+|++||.||.|.++|+...... ...-.+...|..+.|..++ +.+.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 79999999999999998765332 2233455678999999888 34555443 4458999998887655443321
Q ss_pred cc---------CCceEEEEEcCCCCEEEE-EeCCCcEEEEECC---CCce---EEEEeCCCCCCCCceEEEccCCCEEEE
Q 001363 576 LQ---------HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN---KVQL---LTTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 576 ~~---------~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~---~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
.. ...+.......++...+. |+.-+...++-+. ++.. +..+.. ++...|+++.|...+.++.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 00 011111111123334444 4435666665443 3333 233332 23455788999999999999
Q ss_pred EeCCCeEEEEECC
Q 001363 640 IANENRIKILETP 652 (1092)
Q Consensus 640 ~~~dg~i~iw~~~ 652 (1092)
|+.||.+.+|..+
T Consensus 334 GGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 334 GGEDGLLQAWKVE 346 (376)
T ss_pred cCCCceEEEEecC
Confidence 9999999999864
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=2.4e-14 Score=158.07 Aligned_cols=275 Identities=14% Similarity=0.194 Sum_probs=178.1
Q ss_pred eEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-CCCEEEEEEc
Q 001363 348 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 425 (1092)
Q Consensus 348 ~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~ 425 (1092)
+++++...++.|.+||+.+ |+...... + .+.+.+..++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3455667789999999974 33222111 1 1345677899999999997764 4778999999
Q ss_pred cCCCcccceEEEcccccceeEEEEecCCCcEEEEEE-eCCCcEEEEECCC-Cc---eeEEEecCCcCeEEEeecccCCcc
Q 001363 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH 500 (1092)
Q Consensus 426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-~~d~~i~vwd~~~-~~---~~~~~~~~~~~v~~i~~~~~~~~~ 500 (1092)
.....+...... ...+....++|+|+++. ++++ ..++.|.+|++++ +. .+..+.+ ......++++ ++++
T Consensus 65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~--p~g~ 138 (330)
T PRK11028 65 ADDGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANID--PDNR 138 (330)
T ss_pred CCCCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeC--CCCC
Confidence 732222221122 12335678999999994 4444 4588999999874 32 2333332 2334556674 4666
Q ss_pred EEE-EEecCCeEEEEEcCCCCceEE-----e-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--Ce--EEE
Q 001363 501 FIF-SISVDGKIKAWLYDSLGARVD-----Y-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR 569 (1092)
Q Consensus 501 ~l~-s~~~dg~i~vwd~~~~~~~~~-----~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~ 569 (1092)
+++ +...++.|.+||+++...... . ...+.....++|+|||++++++.. .++.|.+|++.. ++ .+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 664 555679999999986432211 1 112345678999999999988763 366799999873 33 333
Q ss_pred EEeeccc---cCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001363 570 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 570 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
.+..... +......+.++|++++++++. .++.|.+|++.... .+...... .....++++|+|++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3332210 112234688999999999985 47899999986433 22222221 2356899999999999887
Q ss_pred C-CCeEEEEECC
Q 001363 642 N-ENRIKILETP 652 (1092)
Q Consensus 642 ~-dg~i~iw~~~ 652 (1092)
. +++|.+|++.
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8999999875
No 196
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=4.8e-17 Score=177.42 Aligned_cols=287 Identities=14% Similarity=0.219 Sum_probs=224.8
Q ss_pred EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE
Q 001363 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1092)
.++.+.+|. +.|+|+.|...|.++++|+.|..++||..+++.++....+|. ..++.++.+.+..++++++.|..|
T Consensus 182 ~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs--~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 182 NIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS--GDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc--cccchhccchhhhhhhhcccCceE
Confidence 345566776 899999999999999999999999999999999999988765 469999999999999999999999
Q ss_pred EEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc-Cccccc
Q 001363 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR-PSECQS 725 (1092)
Q Consensus 647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~-~~~~~~ 725 (1092)
++|.+.++.++..+++|.+.|++++|+|.. +.+.||++++||..... ......
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------------sss~dgt~~~wd~r~~~~~y~prp 310 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------------SSSDDGTCRIWDARLEPRIYVPRP 310 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCccc--------------------------cCCCCCceEeccccccccccCCCC
Confidence 999999999999999999999999999742 55678999999966110 000001
Q ss_pred cccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001363 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805 (1092)
Q Consensus 726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v 805 (1092)
. .......+..+.|..++..+++++.++....|.++.- .| +...+
T Consensus 311 ~---~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---------------~~-----------------~~~~l 355 (1113)
T KOG0644|consen 311 L---KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL---------------AW-----------------RSNLL 355 (1113)
T ss_pred C---CcccccceeeeeccccccccccccCCcccccchhhHh---------------hh-----------------hccce
Confidence 1 1113355677888888999999999988887775431 11 12222
Q ss_pred eEEEEecCC-CEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec
Q 001363 806 PCFALSKND-AYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883 (1092)
Q Consensus 806 ~~~~~s~dg-~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 883 (1092)
.-+.++.|- .+.+++ .+..+++|++.+|...+.+.+|...+..+.++|.+.+...+++.||...|||+-.|.+++...
T Consensus 356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence 222222222 333444 367899999999999999999999999999999888888899999999999999987766554
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001363 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 919 (1092)
.-.+.+..-+||+||..++....-|.+.|.....++
T Consensus 436 ~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 436 IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 334557778999999999988888999998765543
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=1e-14 Score=145.79 Aligned_cols=241 Identities=11% Similarity=0.176 Sum_probs=183.8
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEEcCCceee
Q 001363 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 879 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~ 879 (1092)
...+..+.|..|...|..|+....++|.................|..+-|+. .++|..+.+. .+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 3456677788888899999877788888876554333333344677777876 3666666544 5999999988888
Q ss_pred EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-E--eC
Q 001363 880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE 956 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~--~d 956 (1092)
..+. ...+|.++.+. .++|+.+=.+. |+|||+++ .+.+.+..........+.++++++.+.+||. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~-----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKD-----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccc-----ceeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7776 55679899885 45666665544 99999998 4456655544332235667777777889998 3 45
Q ss_pred CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCc-EEEEEcCCCceEEeeccccccCCCCccccccceE
Q 001363 957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus 957 ~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
|.|.|||+.+.+.+.. ...|.+.+.+++|++||.+|||+|..|+ |||+.+.+|..+..|+...+ ++...+
T Consensus 153 GdV~l~d~~nl~~v~~-I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~IyS 223 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNT-INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSIYS 223 (391)
T ss_pred ceEEEEEcccceeeeE-EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEEEE
Confidence 8899999999988887 5589999999999999999999999998 89999999999999983332 233457
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1036 ~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
++|+| |+.+|++.+..++|++|.+....
T Consensus 224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 89999 68999999999999999996544
No 198
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=8.3e-16 Score=147.73 Aligned_cols=229 Identities=14% Similarity=0.175 Sum_probs=176.4
Q ss_pred CCeEEEEEcCCce--e-eEEecCCCCCeEEEEEcCCCCCEEEEEeCC-------CcEEEEEcCCc---------eeeEee
Q 001363 822 GGVISLYIVMTFK--T-ILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------STILIYNARSS---------EVISKL 882 (1092)
Q Consensus 822 dg~i~iwd~~~~~--~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-------g~v~iwd~~~~---------~~~~~l 882 (1092)
++.|.+.++.... . -..|..|.++|..++-+|.+.++|++...+ ..+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 5778877776443 2 245677889999999999888899988764 25789988642 345555
Q ss_pred c-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEcc--CCCEEEEEeCCcE
Q 001363 883 E-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFLLVHETHL 959 (1092)
Q Consensus 883 ~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~la~~~d~~i 959 (1092)
. .+-+.|.|+.|.|++..+++-. |..|.+|+++.+......+....... .....++-+||| ||..+++..|+++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e--~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE--MRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc--ccceecccccCCCCccceEEEeCCCcE
Confidence 5 4667999999999999999876 77899999998765332222221111 113577889998 8999999999999
Q ss_pred EEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEECCCcEEEEEcCCCceE-EeeccccccCCCCccccccceEEE
Q 001363 960 AIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEASNLEVQ-CRILSTAYLRPTTSCLHVYPHAIA 1037 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~Dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 1037 (1092)
..||+++..+...+..+|...|..+.|.|+.+ +|+||+.||.|++||.+.-+.. ..+. .|..-|+ ++.
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~--------~HsHWvW--~VR 265 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP--------GHSHWVW--AVR 265 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC--------CCceEEE--EEE
Confidence 99999999998888899999999999999876 5789999999999999865443 2221 3455555 788
Q ss_pred ECCCCCCEEEEEeCCCcEEEEecCCC
Q 001363 1038 AHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1038 ~~p~d~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
|+|-..+++++|+.|..|.+|.....
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred ecCccceEEEecCCCceeEEEecccc
Confidence 99877799999999999999986543
No 199
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=5e-16 Score=147.50 Aligned_cols=287 Identities=16% Similarity=0.130 Sum_probs=198.8
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
++.+|.+.|+++.|-.+++ |.+|...|.|++|++.+...+. .++ .|...|+.+.-.|++. +.+-+.|+.+.+
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~l 81 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLIL 81 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEEE
Confidence 3778999999999988776 8899999999999999976554 455 5677899999999865 899999999999
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccC-------CccEEEEEecCCe-EEEEEcCCCCceEEec----CCCCceEEEEE
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKE-------NIHFIFSISVDGK-IKAWLYDSLGARVDYD----APGLGCTRMAY 537 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~-------~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~----~~~~~i~~~~~ 537 (1092)
|++.-+..+. .|.-.++++.|.+.. ..+.++.-+.... +++-|......+.... ...+.+.+..+
T Consensus 82 w~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 82 WTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 9988765432 244445555443211 0011121111100 1122221111122111 12234555443
Q ss_pred c-cCCCE-EEEEecCCCCceeEEEEeCCCCeEEE----------EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001363 538 S-ANGRR-LFSCGTSKEGESFLVEWNESEGAIKR----------TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 538 s-~dg~~-l~~~~~~~~~~~~i~iwd~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1092)
. .++.+ ++.++ .+.+.+.+||+.++..+- ....|. ++|.++.+.+.-..=++|+.+..+..|
T Consensus 159 ~~~c~s~~lllaG---yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 159 DHACGSTFLLLAG---YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMY 232 (323)
T ss_pred cccccceEEEEEe---ccCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceee
Confidence 2 23444 33333 236779999999984432 233444 899999998877777888888889999
Q ss_pred ECCC--CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccc
Q 001363 606 DMNK--VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1092)
Q Consensus 606 d~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (1092)
+++. +.+.......-..+.+..+..-||++.+|+++.|+.||||+..+.+++..++-|...|.+++|+
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs---------- 302 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS---------- 302 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC----------
Confidence 8764 3332221111223568899999999999999999999999999999999999999999999997
Q ss_pred cCCceeecCCCCCCCccceeeccccccceecc
Q 001363 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~ 715 (1092)
|+...++.++.|+.|.+|++
T Consensus 303 ------------pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 ------------PDCELMAAASKDARISLWKL 322 (323)
T ss_pred ------------CCCchhhhccCCceEEeeec
Confidence 66778899999999999985
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=3.5e-16 Score=159.39 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=164.5
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc
Q 001363 806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
.+++|+.+|..++++. ||++|||+..+...+.....|..+|.++.||| |+++|++-+.| ..+||+..+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 89999999988888888888999999999999 99999999999 899999999977776653
Q ss_pred --ccCCeEEEEEcCCC-----CEEEEEeCCCcEEEEEcCCCceeee-eeeecCCCCcCCCCCceEEEEccCCCEEEE-Ee
Q 001363 885 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 955 (1092)
Q Consensus 885 --h~~~V~~l~~spdg-----~~l~s~s~Dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~ 955 (1092)
-......+.|+.|+ ..++....-+.|+.|++........ +..+....+. .|++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~----siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK----SISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC----cceeEEEcCCCcEEEEecc
Confidence 23356678898887 4444555667788888765443111 1112222222 5999999999999999 58
Q ss_pred CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001363 956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 956 d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
||.|-|++..+.+++......|...|+.+.|+||.+++++.+.|..+.|..+.-.
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 9999999999999999888899999999999999999999999999999887763
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=8.8e-15 Score=164.15 Aligned_cols=303 Identities=17% Similarity=0.205 Sum_probs=208.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-CCCCCceEEEcc--CCCEEEEEeCCCeEEEEECCCCc
Q 001363 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNK--NGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
.+...+.|+|-...++++.+.-.|+|||.+.++.+..+.... ....|..+.+-. |..++.+++.||.|+||+--...
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 345677889988999999988899999999999988876542 223467777654 56678888888888888643210
Q ss_pred eeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccc
Q 001363 656 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 735 (1092)
Q Consensus 656 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~ 735 (1092)
. +...++++
T Consensus 1145 ~----------------------------------------~~~eLVTa------------------------------- 1153 (1387)
T KOG1517|consen 1145 W----------------------------------------KKPELVTA------------------------------- 1153 (1387)
T ss_pred c----------------------------------------CCceeEEe-------------------------------
Confidence 0 00001111
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
|++=...+.+...-| .-+.|-....
T Consensus 1154 ------w~~Ls~~~~~~r~~~-------------------------------------------------~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1154 ------WSSLSDQLPGARGTG-------------------------------------------------LVVDWQQQSG 1178 (1387)
T ss_pred ------eccccccCccCCCCC-------------------------------------------------eeeehhhhCC
Confidence 110000000011111 1123333333
Q ss_pred EEEEEe-CCeEEEEEcCCceeeEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc---eeeEeeccccCC--
Q 001363 816 YLFSAS-GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR-- 888 (1092)
Q Consensus 816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~-- 888 (1092)
+|++++ -..|+|||.........+.. ....++++.-+...|+++++|..||.|++||.+.. ..+...+.|+..
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 444444 47899999988777776654 34567888776656799999999999999998764 356778889988
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCc
Q 001363 889 VTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 967 (1092)
Q Consensus 889 V~~l~~spdg~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~ 967 (1092)
|..+.+-+.|- .|++|+.||.|++||+..........+ ..+...++..+++..+++...+|+|+.+.|+||++..
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---v~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G- 1334 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---VAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG- 1334 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---eeccccCccceeeeeccCCCeeeecCcceEEEEecCh-
Confidence 99999988764 499999999999999987432221111 1222222358999999999999998779999999863
Q ss_pred eeeeee------ccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001363 968 TCLKQW------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 968 ~~~~~~------~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
+.+..+ .....+.+.+++|.|---+||+|+.|.+|.||....+.
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 333221 11236778999999999999999999999999877654
No 202
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=1.8e-14 Score=138.81 Aligned_cols=242 Identities=13% Similarity=0.141 Sum_probs=174.4
Q ss_pred CCCCCeeEEEEecCCC----EEEEEeCCeEEEEEcCCce--e--eEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001363 800 NSQEAVPCFALSKNDA----YLFSASGGVISLYIVMTFK--T--ILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDS 866 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~----~l~~~sdg~i~iwd~~~~~--~--~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg 866 (1092)
.|..+++.+.|.|+.+ -++..++..+|+|.+...+ . ...+ ..+..++++..|+.-+.+++.+.+-|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 4899999999999874 2333456789999987322 1 1112 235568999999987889999999999
Q ss_pred cEEEEEcCCce---eeEeeccccCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEE
Q 001363 867 TILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 942 (1092)
Q Consensus 867 ~v~iwd~~~~~---~~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l 942 (1092)
+..|||++++. +..+|-+|..+|..++|+.++ +.+||+|.||.||++|+...+-. ..+...... ..+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~p~~---~~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYEDPSP---STPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecCCCC---CCcceee
Confidence 99999999863 467888999999999999865 68999999999999999874422 233222221 1357889
Q ss_pred EEccCC-CEEEE-EeC-CcEEEEEcCCceeeeeeccCCCCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 943 QFHKDQ-TRFLL-VHE-THLAIYEAEELTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 943 ~~s~dg-~~la~-~~d-~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
+|++.. +++|+ +.| ..|.|.|++.....-.-+.+|.+.|..++|.|. +..|.|+|.|..+.+||+...-......+
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 998755 56777 444 579999998655444447789999999999995 46899999999999999987543211121
Q ss_pred ccccCCCCccccccceEEEECCCCCCEEEEEeC
Q 001363 1019 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1051 (1092)
Q Consensus 1019 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~ 1051 (1092)
..... .++.|. .+.|+|..++.++.+..
T Consensus 329 ilay~---a~~EVN--qi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 329 ILAYT---AGGEVN--QIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhhhh---ccceee--eeeecccCCCEEEEEec
Confidence 11111 134565 45677655677776654
No 203
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=5.5e-14 Score=160.64 Aligned_cols=256 Identities=13% Similarity=0.107 Sum_probs=181.6
Q ss_pred ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCC----CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc
Q 001363 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~ 466 (1092)
+..|...|..++.+++ +.++++||.||+|++|+...- ...+...++..-..++.++.+.+.+. .++.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 6679999999998875 499999999999999998632 22233333333466899999999999 6888899999
Q ss_pred EEEEECCC--Cce-----eEEEec-CCcCeEEEe-ecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEE
Q 001363 467 IKVWDAVT--GSR-----TYSFEG-HGAPVYSLC-PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRM 535 (1092)
Q Consensus 467 i~vwd~~~--~~~-----~~~~~~-~~~~v~~i~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~ 535 (1092)
|++.+++. .+. .+.... ..+.+.++. +........++.+..-+.|..||.+....... .....+-|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 99999876 221 111111 223444443 33222224788899999999999988766554 34456689999
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC---CCEEEEEe--CCCcEEEEECCCC
Q 001363 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV 610 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s--~dg~i~iwd~~~~ 610 (1092)
+.+|-+.+++.|.. .|.+.+||++=+..+....... ..++..+..+|- ....++++ ..+.|.+|++.+|
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999976 6679999999888887766443 356766666654 34555544 5788999999999
Q ss_pred ceEEEEeCCCCC-----------------CCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001363 611 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 611 ~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
.....+...... ......++...+..+.+|+.|..|+.||.....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 877766543110 011223344456788999999999999988653
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.1e-14 Score=165.48 Aligned_cols=235 Identities=12% Similarity=0.114 Sum_probs=162.6
Q ss_pred CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCccc
Q 001363 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR 432 (1092)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~ 432 (1092)
+..|.|||........ +..|...+.+++|||||++||+++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 4689999987654321 56688899999999999999988643 479999998875322
Q ss_pred ceEEEcccccceeEEEEecCCCcEEEEE-EeCCCcEEEE--ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe-cC
Q 001363 433 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD 508 (1092)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s-~~~d~~i~vw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~d 508 (1092)
...+.+| ...++|+|||+ .|+. .+.+|.+.|| |+.+++ +..+..+...+....|++ ||+.|+..+ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence 2223333 44789999999 4554 4467765555 666665 455666777777788855 667666544 67
Q ss_pred CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 509 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
|...+|+++..........+.. ....|+|||++++..+. ..+.+||+.+++........ ....+.|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP 381 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISP 381 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence 8889998765433222222222 45789999999988764 23777999988765333222 234578999
Q ss_pred CCCEEEEEeCCCcEEEEEC--CCCceEEEEeCCCCCCCCceEEEccC
Q 001363 589 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
++++++.++.++...+|.+ .+|.....+..+. ..+...+|+|-
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 9999999999998888875 3577777776543 34778889874
No 205
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=1.2e-12 Score=143.25 Aligned_cols=332 Identities=15% Similarity=0.161 Sum_probs=208.2
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001363 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 534 (1092)
Q Consensus 455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 534 (1092)
.+++++-..++.|.|.|..+.+.+.++......-..+.+ ++|++++++++.||.|.++|+.+.+....+.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 346677788999999999999999999865544344555 5688899999999999999999999777776544 5678
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK 609 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~ 609 (1092)
+++|+||++++++... .+.+.++|..+.+.++.+..... ....+.++..+|....++..- +.+.|.+-|...
T Consensus 83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999999999987642 56799999999999988765431 124577888888888666554 458888888877
Q ss_pred CceEE--EEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCC
Q 001363 610 VQLLT--TIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1092)
Q Consensus 610 ~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 686 (1092)
.+.+. .+... .......|+|++++++++ ..+..|.++|..+++....+.....
T Consensus 160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~--------------------- 215 (369)
T PF02239_consen 160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKK--------------------- 215 (369)
T ss_dssp SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS---------------------
T ss_pred ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeecccc---------------------
Confidence 65443 33322 235689999999988775 4467888999887654432221000
Q ss_pred ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCC
Q 001363 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1092)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~ 766 (1092)
.|..+...+ ..|..- .+|.
T Consensus 216 ---------------------------------------------p~~~~~~~~-php~~g-----------~vw~---- 234 (369)
T PF02239_consen 216 ---------------------------------------------PHPGPGANF-PHPGFG-----------PVWA---- 234 (369)
T ss_dssp ---------------------------------------------BEETTEEEE-EETTTE-----------EEEE----
T ss_pred ---------------------------------------------ccccccccc-cCCCcc-----------eEEe----
Confidence 011122111 111111 0111
Q ss_pred CcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE-EEeCCeEEEEEcCCceeeEEecCCCCC
Q 001363 767 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SASGGVISLYIVMTFKTILTIMPPSPT 845 (1092)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~-~~sdg~i~iwd~~~~~~~~~~~~~~~~ 845 (1092)
.+..+...+ ..+.+.+.+||..+++.++++......
T Consensus 235 -------------------------------------------~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g 271 (369)
T PF02239_consen 235 -------------------------------------------TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG 271 (369)
T ss_dssp -------------------------------------------EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred -------------------------------------------eccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence 111122221 122345567888889999998876666
Q ss_pred eEEEEEcCCCCCEEEEE----eCCCcEEEEEcCCceeeEeecccc-CCeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCC
Q 001363 846 ATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSSGGD--AQIFVWDVDGW 918 (1092)
Q Consensus 846 i~~l~~s~~d~~~lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~s~s~D--g~I~iwd~~~~ 918 (1092)
.-+..+| +++++.+. ...++|.++|.++.+.+..+.... ..+..+.|++||+.+..+..+ +.|.|||..+.
T Consensus 272 -lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 272 -LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp ---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred -ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 7788899 88899887 455799999999998888876433 358999999999977655443 36999999997
Q ss_pred ceee
Q 001363 919 GIQT 922 (1092)
Q Consensus 919 ~~~~ 922 (1092)
+...
T Consensus 350 ~~~~ 353 (369)
T PF02239_consen 350 KEKK 353 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7554
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=3e-13 Score=147.87 Aligned_cols=318 Identities=10% Similarity=0.130 Sum_probs=201.8
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
++.|.+.|..+.+.+..+.... ..-..+.++||++++++++.||.|.++|+.+++.+.++..... ...+++++|
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---~~~i~~s~D 88 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---PRGIAVSPD 88 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---EEEEEE--T
T ss_pred CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---cceEEEcCC
Confidence 6679999999999999998644 3345578999999999999999999999999999999976533 578999999
Q ss_pred CCEEEEEe-CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001363 634 GTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 634 ~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l 712 (1092)
|++++++. ..+.+.++|..+.+.+..+.......
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~--------------------------------------------- 123 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV--------------------------------------------- 123 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---------------------------------------------
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccc---------------------------------------------
Confidence 99998775 58999999999887776654211100
Q ss_pred eccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-CeeEEEeecCCCcCcCcccccccCCccccCCCCCce
Q 001363 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791 (1092)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 791 (1092)
.....++.++..++....++..-.+ +.+.+-|+.... .+
T Consensus 124 ------------------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~----------------------~~ 163 (369)
T PF02239_consen 124 ------------------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK----------------------NL 163 (369)
T ss_dssp ------------------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS----------------------CE
T ss_pred ------------------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc----------------------cc
Confidence 0023456777778888766655554 666555543321 01
Q ss_pred eeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC----CCCCeEEEEEcCC---------CC
Q 001363 792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----PSPTATSLAFNPH---------DN 856 (1092)
Q Consensus 792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~---------d~ 856 (1092)
....+ ..........|+|++++++++. .+.|.++|.++++.+..+.. |..+...+- +|. .+
T Consensus 164 ~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~~~ 239 (369)
T PF02239_consen 164 KVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP-HPGFGPVWATSGLG 239 (369)
T ss_dssp EEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE-ETTTEEEEEEEBSS
T ss_pred ceeee---cccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccccccc-CCCcceEEeecccc
Confidence 11111 1234556789999999988875 57899999999988766532 333333221 221 22
Q ss_pred CEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE----eCCCcEEEEEcCCCceeeeeeeecCCCC
Q 001363 857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS----GGDAQIFVWDVDGWGIQTCRSLQTPDGV 932 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 932 (1092)
...++.-....+.+|+..+.+.++++....++ .-+.-+||++++... ...++|.++|.++.+... .+....+
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~- 315 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPG- 315 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT-
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCC-
Confidence 33323333345667899999999999977666 778889999999987 455889999999854221 1211111
Q ss_pred cCCCCCceEEEEccCCCEEEEE---eCCcEEEEEcCCceeeeeec
Q 001363 933 MTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWF 974 (1092)
Q Consensus 933 ~~~~~~v~~l~~s~dg~~la~~---~d~~i~lwd~~~~~~~~~~~ 974 (1092)
..+..+.|++||+.+-++ .++.|.+||..+.+.+..+.
T Consensus 316 ----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 316 ----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp ------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 137899999999987763 34489999999999888743
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.3e-15 Score=153.56 Aligned_cols=197 Identities=21% Similarity=0.208 Sum_probs=151.0
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001363 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 926 (1092)
Q Consensus 847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 926 (1092)
.+++|+. ++..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||++.++-... -
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~ 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---R 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---h
Confidence 7899999 89999999999999999999888888888899999999999999999999999 79999999973221 1
Q ss_pred ecCCCCcCCCCCceEEEEccCC---CE-EEEE--eCCcEEEEEcCCcee-----eeeeccCCCCCEEEEEEecCCCEEEE
Q 001363 927 QTPDGVMTLAPSETHIQFHKDQ---TR-FLLV--HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT 995 (1092)
Q Consensus 927 ~~~~~~~~~~~~v~~l~~s~dg---~~-la~~--~d~~i~lwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~t 995 (1092)
.++.+.. .....+.|+.|+ .+ +++. .-+.|..|++..... .++.. .....|++++.|+||++++.
T Consensus 223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence 1111211 247789999888 33 3332 335677766643222 11111 12457999999999999999
Q ss_pred EECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001363 996 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 996 ~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
|+.||.|.|++..+.+...-+. ..|..-| ..+.|+| |.+++++.+.|.+..+..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk-------~aH~~~V--T~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK-------EAHLGFV--TGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh-------hhheeee--eeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999998887663332 2245544 4789999 689999999999999998865
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=3.9e-14 Score=159.05 Aligned_cols=297 Identities=14% Similarity=0.177 Sum_probs=207.0
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CCC
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGS 409 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~ 409 (1092)
+....-..+.|+|-.. .++++...-.|+|||.+.++.+..+.- -......|+.+.+-. |..
T Consensus 1062 ~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n----------------~~~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDN----------------GAFPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred cCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccC----------------CCCCCCccceeeeecccchh
Confidence 4344567788999887 567777667899999999988754211 112346788888876 677
Q ss_pred EEEEEeCCCEEEEEEccCC--C---cccceEEEccc----ccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 410 LLGVAYSKHIVQLYAYHGG--S---DARQQLEIDAH----VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~--~---~~~~~~~~~~h----~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
++++|+.||.|+||+--.. + .+.....+.++ .+.=.-+.|-.... .|+++|.-..|+|||.....+++.
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEee
Confidence 9999999999999975322 1 11111112221 11113356766665 566666688999999999888877
Q ss_pred Eec-CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCc--eEEEEEccCCCE-EEEEecCCCC
Q 001363 481 FEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKEG 553 (1092)
Q Consensus 481 ~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~--i~~~~~s~dg~~-l~~~~~~~~~ 553 (1092)
+.. ....|+++.-... .|..+++|..||.|++||.+.... +..+..|... |..+.+.+.|-. |++++.
T Consensus 1203 iP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---- 1277 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---- 1277 (1387)
T ss_pred cccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----
Confidence 743 4456777765433 368999999999999999876543 4456666665 999999887765 888876
Q ss_pred ceeEEEEeCCCCeEEEEEe--eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----CCCCCCc
Q 001363 554 ESFLVEWNESEGAIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENP 626 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~ 626 (1092)
+|.|++||++.......+. .|..-.+..+++..++....+++|+. +.|.||++... .+..+..+ .....+.
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~s 1355 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVS 1355 (1387)
T ss_pred CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCCcc
Confidence 5559999998752222221 11101124899999999999999988 99999998643 33333221 1234578
Q ss_pred eEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 627 RICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
+++|+|..-++|+|+.|..|.||.....
T Consensus 1356 cL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1356 CLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeeecchhHhhhhccCCceEEEeecCCc
Confidence 9999999999999999999999987654
No 209
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.63 E-value=5.8e-14 Score=156.94 Aligned_cols=252 Identities=17% Similarity=0.157 Sum_probs=181.7
Q ss_pred CCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCcc--cc-eEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 395 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 395 h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~--~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
-...|.|++|+| +..++|.|..+|.|.+||+..+... .. ......|..+++.+.|..+-...-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567999999999 6778888899999999999877651 11 1123468899999999776442249999999999999
Q ss_pred ECCCCce------eEEEe------cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--------eEEecCCCC
Q 001363 471 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL 530 (1092)
Q Consensus 471 d~~~~~~------~~~~~------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~~~~ 530 (1092)
+++.-.. ..... .-...++++.|.+. +-..++.|+.+|.|.--.....+. ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 12345778888765 446799999999988733322221 225566778
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCE-EEEEeCCCcEEEEECC
Q 001363 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~s~dg~i~iwd~~ 608 (1092)
+|.++.++|-+..++..+. +-++++|... ....+..+..+. ..+.+++|+|.... ++++..||.+.+||+.
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999999998876665543 6679999987 555655565555 66999999998755 4557789999999997
Q ss_pred CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
....-......-.....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 473 ~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 473 QDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 5443332222222345678888999999999999999999998744
No 210
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.62 E-value=6.4e-12 Score=142.66 Aligned_cols=199 Identities=16% Similarity=0.161 Sum_probs=156.5
Q ss_pred ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe--EEEeecccCCccEEEEEecCCeEEEEEcCCCC
Q 001363 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 520 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 520 (1092)
.|....+..+.+ .++.+..++.+.+||...+..+..+....... .++.+-.+.+.-++++|+.-+.|.+|++....
T Consensus 89 wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 89 WIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344455666666 57777778899999998887776665332221 11222234455789999999999999998555
Q ss_pred ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCC
Q 001363 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1092)
Q Consensus 521 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 599 (1092)
....+.+|.+.|.++.++.||+++++++. +..+++|++.+++... ..-+|. ..+..++|.|+ .++++++|
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~~fgHs---aRvw~~~~~~n--~i~t~ged 237 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCTGFGHS---ARVWACCFLPN--RIITVGED 237 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCccccccc---ceeEEEEeccc--eeEEeccc
Confidence 55578999999999999999999999987 6669999999998877 556666 89999999998 89999999
Q ss_pred CcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 600 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
-+.++|+.+ +..+..+..|.. ..+..++..++...+++++.|+.+++|++...
T Consensus 238 ctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 238 CTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 999999765 444446666544 45899999999999999999999999998753
No 211
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.62 E-value=1e-10 Score=120.64 Aligned_cols=103 Identities=11% Similarity=0.069 Sum_probs=81.6
Q ss_pred CCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC----cEEEEEcCCc
Q 001363 802 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSS 876 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~ 876 (1092)
-+.|.++..++||++++++.+ ..+.+.|+.++.....-+...+-|+.++|+| +++++|.+--+| .|++||+.++
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCC
Confidence 456778888999998888876 7789999999887666666778899999999 999999988777 7899999998
Q ss_pred eeeEeeccccCCeEEEEEcCCCCEEEEEeC
Q 001363 877 EVISKLEGHSKRVTGLVFSDALNILVSSGG 906 (1092)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 906 (1092)
+....-. ..+.=.+-+|.||+++|..-+.
T Consensus 480 Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 480 KIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 8665443 2333456789999999876553
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.9e-14 Score=162.12 Aligned_cols=232 Identities=18% Similarity=0.195 Sum_probs=152.5
Q ss_pred ccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCC---CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC
Q 001363 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h 395 (1092)
+.+......+.+..|...+..++|||||++ ||..+.+ ..|.+||+.+++...... +.+|
T Consensus 188 i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~ 249 (429)
T PRK01742 188 VADYDGFNQFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH 249 (429)
T ss_pred EECCCCCCceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc
Confidence 344444456778888889999999999996 4554432 469999999886433111 2233
Q ss_pred CCcEEEEEECCCCCEEEEEe-CCCEEEEE--EccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001363 396 GVSVNRVVWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~-~d~~i~iw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
...++|||||++|++++ .+|.+.|| |+.++.. . .+..+...+...+|+|||+. +++++..++...||++
T Consensus 250 ---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 250 ---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRM 321 (429)
T ss_pred ---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEE
Confidence 34689999999998875 57765555 6655542 2 45567777889999999995 3334456788888876
Q ss_pred CCC-ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 473 VTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 473 ~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
... .....+ .+.. ....| ++||+.|+..+.++ +.+||+.++........ .....+.|+|||++++.++.++
T Consensus 322 ~~~~~~~~~l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g 393 (429)
T PRK01742 322 SASGGGASLV-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQG 393 (429)
T ss_pred ECCCCCeEEe-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCC
Confidence 532 222333 3433 34455 55778888887765 45589887765433222 2335678999999999987633
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
. ...+.+++ .+|..++.+..+. +.+...+|+|-
T Consensus 394 ~-~~~l~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 394 L-GKVLQLVS-ADGRFKARLPGSD---GQVKFPAWSPY 426 (429)
T ss_pred C-ceEEEEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence 2 22333444 3577777787666 67788888874
No 213
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.61 E-value=1.6e-09 Score=131.77 Aligned_cols=510 Identities=12% Similarity=0.131 Sum_probs=287.5
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEE----EccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
...+.|.++.|-+|...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 355789999999999999999999999999 444422 11 2334566899999999999 5666666788877
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEc----------CCCCc----eEEecCCCCceEEE
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY----------DSLGA----RVDYDAPGLGCTRM 535 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~----------~~~~~----~~~~~~~~~~i~~~ 535 (1092)
-+ .+-..+....-+..... ....++.+..+.=.-+.= +.... ...+. ....-..+
T Consensus 147 mt-~~fd~i~E~~l~~~~~~---------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~I 215 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFG---------ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRI 215 (928)
T ss_pred Ee-ccceEEEEeecCccccC---------CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEE
Confidence 65 55555554443321110 012222221111000000 00000 00111 22345679
Q ss_pred EEccCCCEEEEEecCCC-C-ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCC
Q 001363 536 AYSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKV 610 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~ 610 (1092)
+|-.||.++++.+.+.. + ...+++|+.. |.+..+..... +--.+++|-|.|+.+++... ...|.+|.. +|
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NG 290 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NG 290 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CC
Confidence 99999999998876333 2 5889999965 76655554333 45567899999999888653 445667764 44
Q ss_pred ceEEEEeCC--CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCce
Q 001363 611 QLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1092)
Q Consensus 611 ~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 688 (1092)
-.-..+... .....|..+.|++|+..||+...|. |.+|...+-...-...- .+.
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei--------~~~--------------- 346 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI--------RFS--------------- 346 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE--------Ecc---------------
Confidence 444444433 2334689999999999999988765 99998876643322110 000
Q ss_pred eecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCC-cEEEEeecCCeeEEEeecCCC
Q 001363 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRND 767 (1092)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~~w~~~~~~ 767 (1092)
....+..+.|+|.. ..|...+.+|.+..+++..
T Consensus 347 --------------------------------------------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~-- 380 (928)
T PF04762_consen 347 --------------------------------------------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW-- 380 (928)
T ss_pred --------------------------------------------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE--
Confidence 01112225555533 3355555556666555421
Q ss_pred cCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-CCCEEEEEeCCeEEEEEcCCceee-----EEecC
Q 001363 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTI-----LTIMP 841 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~-dg~~l~~~sdg~i~iwd~~~~~~~-----~~~~~ 841 (1092)
++..+. ..+| |...+++..+.++.+-.+...-.. ..+.
T Consensus 381 ----------------~v~~s~-------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~- 424 (928)
T PF04762_consen 381 ----------------DVSRSP-------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE- 424 (928)
T ss_pred ----------------EEEecC-------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-
Confidence 111110 0111 222344444556777666543221 2222
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee--------eEeec----------cccCCeEEEEEcCCCCEEEE
Q 001363 842 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------ISKLE----------GHSKRVTGLVFSDALNILVS 903 (1092)
Q Consensus 842 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------~~~l~----------~h~~~V~~l~~spdg~~l~s 903 (1092)
....|.+++|++ ++..+|+-..||.+.+|....... ...+. .-...+..++|..+...++.
T Consensus 425 ~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (928)
T PF04762_consen 425 LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVL 503 (928)
T ss_pred CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEE
Confidence 346899999999 677799999999999998644321 11111 12345788899888777776
Q ss_pred EeCC---CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCC
Q 001363 904 SGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSV 979 (1092)
Q Consensus 904 ~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~ 979 (1092)
...+ ..+.++++...+... ......... ..+..+...++...++. ..+|.+..++..........++. .-
T Consensus 504 ~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c 577 (928)
T PF04762_consen 504 SDSDSNQSKIVLVDIDDSENSA--SVESSTEVD---GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PC 577 (928)
T ss_pred EecCcccceEEEEEeccCCCce--eEEEEeccC---ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CC
Confidence 6654 578888885432111 111111111 13455555666553444 67888887766543322211211 22
Q ss_pred CEEEEEEecCCC---EEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEE
Q 001363 980 PISQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus 980 ~v~~l~fs~dg~---~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~ 1056 (1092)
....++...+.. .++.-+..|.+++ ++..++ ..+. +++.+ +.+|+.......++
T Consensus 578 ~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la--------------~~~t--SF~v~---~~~Ll~TT~~h~l~ 634 (928)
T PF04762_consen 578 PWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA--------------SNCT--SFAVT---DSFLLFTTTQHTLK 634 (928)
T ss_pred cEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe--------------cCCc--eEEEE---cCEEEEEecCceEE
Confidence 223333333333 3443334444443 344431 1233 44455 36788888889999
Q ss_pred EEecC
Q 001363 1057 VIEPN 1061 (1092)
Q Consensus 1057 ~w~~~ 1061 (1092)
+.++.
T Consensus 635 fv~L~ 639 (928)
T PF04762_consen 635 FVHLN 639 (928)
T ss_pred EEECc
Confidence 99997
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=8.9e-14 Score=145.33 Aligned_cols=169 Identities=11% Similarity=0.154 Sum_probs=126.8
Q ss_pred ecCCCEEEEEe-CCeEEEEEcCCceeeEEec----CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC----------
Q 001363 811 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 875 (1092)
Q Consensus 811 s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---------- 875 (1092)
.+.+--+.++- -|.+.+.|....+..+.+. -....++|+.|-|.+...++++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45665666665 4888888866522211111 12368999999997777888889999999997531
Q ss_pred ----ce--------------eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCC
Q 001363 876 ----SE--------------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 937 (1092)
Q Consensus 876 ----~~--------------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 937 (1092)
+. ++..+.--.+.|...+|||||++||+.|.||.+||+|+.+.+ ++....... +
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence 11 122222234578889999999999999999999999999844 333333333 3
Q ss_pred CceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEec
Q 001363 938 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC 988 (1092)
Q Consensus 938 ~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~ 988 (1092)
...+++|||||++|++ |.|.-|.||....++.+.. -.+|...|+.++|.|
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence 7899999999999999 6889999999999998886 678999999999987
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=6.8e-13 Score=132.12 Aligned_cols=288 Identities=16% Similarity=0.170 Sum_probs=190.3
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CCCEEEEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~ 414 (1092)
.+..++|++.-. -+|++..|-.|++||-.....-.. -......|+|++|-| .++-|++|
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~L-------------------ks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTKL-------------------KSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCCCCCcee-------------------cchhhcceeEEEeccCCcceeeee
Confidence 677888888543 478888999999999776322211 112456899999999 46778888
Q ss_pred eCCCEEEEEEccCCCcc-----------cceEEEcccccceeEEEEecCCCcEEEEEEeC-CCcEEEEECCCCceeEEEe
Q 001363 415 YSKHIVQLYAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~-----------~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~~ 482 (1092)
+..| |.||....-... .+...-.+| .+|+++.|.+||. .+++++. |..|.|||..+|..+....
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence 8877 999987532111 111223455 5899999999999 6787774 6689999999998876554
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE--
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW-- 560 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw-- 560 (1092)
...+.+.-+.|+| |+.+|+.+.-|+..++|+....-.........+.|...+|+|+|++|+..... ...++-.
T Consensus 236 ~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence 4556787888855 77899999999999999655443333344444589999999999987765531 2223221
Q ss_pred eCCCCeE-----------E------EEEeeccccCCceEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCceEEE
Q 001363 561 NESEGAI-----------K------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------VIKIWDMNKVQLLTT 615 (1092)
Q Consensus 561 d~~~~~~-----------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--------~i~iwd~~~~~~~~~ 615 (1092)
+-+.+.. + ....+...-.+.+.+++|.|.|.++++.-..+ .|.+||...--.+..
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 1111110 0 11112122246789999999999999865333 366788765444433
Q ss_pred EeC-CCCCCCCceEEEcc---CCCEEEEEeCCCeEEEEECC
Q 001363 616 IDA-GGGLPENPRICFNK---NGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 616 ~~~-~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~ 652 (1092)
... .........++|+| ++.+|.++-..|.+.-|.+.
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 311 11112245677776 67888888888888777654
No 216
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.60 E-value=1.8e-11 Score=139.06 Aligned_cols=200 Identities=15% Similarity=0.153 Sum_probs=151.3
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.|....+.-+.+ .++.+..++.+.+||...+....... .+.+.. -....-+.++++.-++++|+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~-------~~er~~--------l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ-------SDERCT--------LYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC-------CCceEE--------EEeEEEEeccCcEEEEEecc
Confidence 344445555555 57778888999999998876664210 000000 01223355778888999999
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE-EEecCCcCeEEEeec
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPH 494 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~i~~~ 494 (1092)
.-+.|.+|+......- ..+.||.+.|.++.|+.||+ ++++.|.|.++++|++++++.+. ..-+|+..|..++|.
T Consensus 153 v~~~iivW~~~~dn~p---~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKP---IRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccccEEEEeccccCCc---ceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence 9999999999833211 14789999999999999999 89999999999999999998876 667899999999996
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
+. .+++++.|-+.++|+.+..... .+..|. ..+..++..++...+++++. ++.+++|+....
T Consensus 228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 53 8999999999999976544333 555554 47899999998888888886 666999987643
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=3.3e-12 Score=125.58 Aligned_cols=239 Identities=14% Similarity=0.203 Sum_probs=169.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEccccc--ceeEEEEecCCCcEEEEEEeC-----CCcEEEE
Q 001363 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NVNDLAFSAPCKQISVITCGD-----DKTIKVW 470 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~s~d~~~l~l~s~~~-----d~~i~vw 470 (1092)
...+++|+.|..-+++|..+| .+||+.+--+... .-..+.+ .+..+-| -.+.+.|+-|+. -..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 445599999999999998888 9999987522211 1111222 2222333 234334444443 2479999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCC--CceEEEEEccCCCEEEEE
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPG--LGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~--~~i~~~~~s~dg~~l~~~ 547 (1092)
|=...+++.++. ...+|.++.+... .|++. ..+.|.||.+. ..+....+.... ....+++-..+...|+.-
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 977788888886 7789999998542 34443 56789999987 444444443322 233333333333444443
Q ss_pred ecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceEEEEeCCCCCCC
Q 001363 548 GTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPE 624 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~ 624 (1092)
+ ...|.|++-|+...+. ...+..|. ..|.+++.+.+|..++++|..|+ |||||..+|..+..+........
T Consensus 155 g---~k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 155 G---FKTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD 228 (346)
T ss_pred C---CccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence 3 2357799999876655 46677777 99999999999999999999988 79999999999999987666678
Q ss_pred CceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 625 NPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
|.+++|||+..+||++++.|++.|+.+...
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999999999999999999999999998764
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-13 Score=157.88 Aligned_cols=362 Identities=12% Similarity=0.078 Sum_probs=223.8
Q ss_pred CceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCc---cccccccCC
Q 001363 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS---ECQSLLLPS 730 (1092)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~---~~~~~~~~~ 730 (1092)
|..+..+..|...+..++.+ ++++.++++|+.||+|++|+...-... ....+.+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s---------------------~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-- 1094 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVS---------------------SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-- 1094 (1431)
T ss_pred ceEeehhhhccccccceeec---------------------CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE--
Confidence 34555666677777666666 577899999999999999996532222 1111111
Q ss_pred ccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001363 731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
....+++.++...+.+..+++++.||.|++.++..... ... .+.+.....+. ....-+..-+|
T Consensus 1095 s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~----~~~-----------~~~~~ri~n~~--~~g~vv~m~a~ 1157 (1431)
T KOG1240|consen 1095 SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV----SKR-----------VATQVRIPNLK--KDGVVVSMHAF 1157 (1431)
T ss_pred eccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc----ccc-----------eeeeeeccccc--CCCceEEeecc
Confidence 11467889999999999999999999999998865311 000 00111111111 11222333333
Q ss_pred ecC-CC-EEEEEeC-CeEEEEEcCCceeeEEec--CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec-c
Q 001363 811 SKN-DA-YLFSASG-GVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-G 884 (1092)
Q Consensus 811 s~d-g~-~l~~~sd-g~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~ 884 (1092)
... +. .++.+.+ +.|..||+.......+++ ...+.|++++.+| .+.++++|+..|.+.+||++-+.++..+. +
T Consensus 1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHP 1236 (1431)
T ss_pred cccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCc
Confidence 332 23 5555554 889999998776665554 3457899999999 89999999999999999999988887775 3
Q ss_pred ccCCeEEEEEcCCC---CEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCCc-----------CCCCCceEEEEccCC
Q 001363 885 HSKRVTGLVFSDAL---NILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVM-----------TLAPSETHIQFHKDQ 948 (1092)
Q Consensus 885 h~~~V~~l~~spdg---~~l~s~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~l~~s~dg 948 (1092)
+..+|..+...|-. ...++++ ..+.|.+|++.+|............... +........++...+
T Consensus 1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence 55788888877643 4555554 4678999999998655432222000000 000122334444445
Q ss_pred CEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcE-EEEEcC-----CCceEEeeccccc
Q 001363 949 TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEAS-----NLEVQCRILSTAY 1021 (1092)
Q Consensus 949 ~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i-~vwd~~-----~~~~~~~~~~~~~ 1021 (1092)
.++.+ ++|..|+.||....+...-...+.+.......++.+ .-++.++.--.. ...... .+...........
T Consensus 1317 ~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred ceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence 55666 789999999998665442222332333333333332 223333221000 111111 1222344455566
Q ss_pred cCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001363 1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1022 ~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1059 (1092)
.++..|.++|..++....+ ..++++++.||.|.+|.
T Consensus 1396 ~ps~~H~d~Itdma~~~~~--q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPSTYHHDPITDMATLKSE--QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCcccccchhhhhhhhccC--ccEEEEecCCCeeeecC
Confidence 6777789999988888776 47999999999999994
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.7e-14 Score=150.46 Aligned_cols=245 Identities=13% Similarity=0.178 Sum_probs=170.5
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
..+.|.||++-|+|++|+.||. +|++||.|-.+.|||.-..+.+.. +-+||...|.++.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence 3477899999999999999998 899999999999999987766653 367899999999999
Q ss_pred C--CCCEEEEEeCCCEEEEEEccCCC-------cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001363 406 P--DGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 406 p--dg~~las~~~d~~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
| +.+.+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.. .+.+++.||+|+-+|++...
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence 9 57788999999999999998521 12223345679999999999999965 79999999999999987632
Q ss_pred -eeEE---------EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-----ecCCCCceEEEE-EccC
Q 001363 477 -RTYS---------FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMA-YSAN 540 (1092)
Q Consensus 477 -~~~~---------~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~i~~~~-~s~d 540 (1092)
+-.. +...--...++.++|.. ..+|+.|+.|-..++||.+....... ...+.....++. |+|.
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~ 260 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG 260 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence 1111 11111234567777764 47999999999999999643221110 011111122222 2222
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001363 541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1092)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1092)
+- .. ..|..... ...++.++|+|+|.-++..-....|+++|+..++.....
T Consensus 261 hl----kn--------------~~gn~~~~-------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 261 HL----KN--------------SQGNLDRY-------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cc----cC--------------cccccccc-------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 21 00 00100000 023667899999988888766678999999887765544
No 220
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.59 E-value=1.7e-13 Score=153.21 Aligned_cols=252 Identities=17% Similarity=0.201 Sum_probs=184.9
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCee--EEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC--C
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG--S 409 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~--~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg--~ 409 (1092)
..+|+|++|+|....++|.|..+|.|.+||+..+... ... ......|..+|+.+.|-.+- .
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l---------------s~~~~sh~~~v~~vvW~~~~~~~ 306 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL---------------SALEVSHSEPVTAVVWLQNEHNT 306 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc---------------ccccccCCcCeEEEEEeccCCCC
Confidence 3499999999998889999999999999999987652 211 11255699999999998754 4
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEE--c-------ccccceeEEEEecCCCcEEEEEEeCCCcEEEEE---CCCCc-
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEI--D-------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVTGS- 476 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~--~-------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd---~~~~~- 476 (1092)
-+++++.||.|..|++..-........+ . .-...+++++|.+.... .++.|+.+|.|..=+ ...+.
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCccccc
Confidence 4999999999999988643321111011 1 12236899999988776 788899999988733 22222
Q ss_pred ----eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 477 ----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 477 ----~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
.+..+..|.++|+++.++|-.. ..+.+++ |-++++|.-. ...+...+..+...+++++|||-...++++.
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~--- 460 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV--- 460 (555)
T ss_pred ccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE---
Confidence 1335567889999999877653 3444444 9999999887 5566667777777799999999887777665
Q ss_pred CCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001363 552 EGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
+++|.+.+||+..... +.+..... .....+.|+++++.+++|...|++.+|++..
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCCceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 4578899999875432 22322222 5677788999999999999999999999864
No 221
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.1e-14 Score=148.30 Aligned_cols=295 Identities=14% Similarity=0.144 Sum_probs=221.7
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
|.+|.+.|..|.|...|..|++|+.|..|.+||+.++...... ..||...|....|-|......+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 7789999999999999999999999999999999988755432 34899999888888865444799999999999876
Q ss_pred CC-CCce--eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCC---ceEEEEEccCCC
Q 001363 472 AV-TGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGL---GCTRMAYSANGR 542 (1092)
Q Consensus 472 ~~-~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~---~i~~~~~s~dg~ 542 (1092)
+. ++.+ ...+..|.++|.-++..|.. -.-|.+++.|+.+.-.|++.......+.. +.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 54 3433 24556799999999876643 35789999999999999987665433321 222 456788888776
Q ss_pred -EEEEEecCCCCceeEEEEeCCCCeE------EEEEeeccc---cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--C
Q 001363 543 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V 610 (1092)
Q Consensus 543 -~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~ 610 (1092)
.+++++. +..+++||.+.-.. +..+..+.. ..-.|++++|+.++.-+++...|-.|+++...- |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5556554 66788998764322 222222211 124589999998888888888899999995432 2
Q ss_pred ----------ceEEE-EeCCCCCCCCceEEE-ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcc
Q 001363 611 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 611 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
..+.. ..+|.....|..+-| -|...++++|++=|.|.||+-.+++.+..+.+-..-|.|+.-+|.
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~--- 447 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH--- 447 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC---
Confidence 11222 455655555777765 578999999999999999999999999999988888888877754
Q ss_pred ccccccCCceeecCCCCCCCccceeeccccccceecc
Q 001363 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~ 715 (1092)
-..|++++-|..|+||..
T Consensus 448 -------------------~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 448 -------------------LPVLASSGIDHDVKIWTP 465 (559)
T ss_pred -------------------CchhhccCCccceeeecC
Confidence 455788889999999985
No 222
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=4.1e-12 Score=136.88 Aligned_cols=510 Identities=12% Similarity=0.140 Sum_probs=302.3
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc------------ccceEEEcccccceeEEEEecCCCcEEEEEEe
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~------------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~ 462 (1092)
......|++|+....|+|+|+.||.+++-.+.+... +.--.++.||.+.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 456788999999999999999999999998875422 111235789999999999999888 699999
Q ss_pred CCCcEEEEECCCCceeEEEe--cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC
Q 001363 463 DDKTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 540 (1092)
Q Consensus 463 ~d~~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d 540 (1092)
.+|.|.||-+-.|.-...+. .....|.+++| ..||..+.....||.|.+=.++..+ +.--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence 99999999988876554332 24456788888 4577888888888888776554322 1111122223456889999
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCC-------eEEEEEeec-cccCCceEEEEEc--------CCCCEEEEEeCCCcEEE
Q 001363 541 GRRLFSCGTSKEGESFLVEWNESEG-------AIKRTYQGL-QLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 541 g~~l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~-~~~~~~v~~~~~~--------~~~~~l~~~s~dg~i~i 604 (1092)
.+.++.+-. ++.+.++|.... .+.....+. ......+..+.|. |+...++++-.+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 988877655 445888886532 111111111 1001224444443 57889999999999988
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe---------EEEEECCCCceeeecccccCceeeeeecCC
Q 001363 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR---------IKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~---------i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
-.-.+......+... ..+....|+++|..||+++.+.. |.+|. .-|..+..++.+..
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~---------- 309 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS---------- 309 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc----------
Confidence 765554433333322 34778899999999999987531 22221 11222333333333
Q ss_pred CccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC
Q 001363 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755 (1092)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 755 (1092)
.|+++.|-..|-+++. .-|
T Consensus 310 ------------------------------------------------------------~It~lsWEg~gLriA~-Avd 328 (1189)
T KOG2041|consen 310 ------------------------------------------------------------CITGLSWEGTGLRIAI-AVD 328 (1189)
T ss_pred ------------------------------------------------------------eeeeeEEcCCceEEEE-Eec
Confidence 3444444443332222 222
Q ss_pred CeeEEEeecCCCc----------CcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001363 756 GVHLMWRWPRNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 824 (1092)
Q Consensus 756 g~i~~w~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~ 824 (1092)
+.|.+=++...-. ...+.......+.+||..+.+.... .-....+++++.+--.|+.-. ++.
T Consensus 329 sfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~ 401 (1189)
T KOG2041|consen 329 SFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGV 401 (1189)
T ss_pred ceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCC
Confidence 2333322211100 0011111123455677666553322 223455677776655555544 355
Q ss_pred EEEEEc-CCceeeEEec----------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee---------------
Q 001363 825 ISLYIV-MTFKTILTIM----------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------------- 878 (1092)
Q Consensus 825 i~iwd~-~~~~~~~~~~----------~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------------- 878 (1092)
+.-++. ++...+..+. ..-..|.-.-..- ++..++.++.+ .+.+|.....+.
T Consensus 402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~ 479 (1189)
T KOG2041|consen 402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRF 479 (1189)
T ss_pred CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccc
Confidence 544422 1111111110 0001121111122 56677777765 477786532211
Q ss_pred -----------------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceE
Q 001363 879 -----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 941 (1092)
Q Consensus 879 -----------------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 941 (1092)
..++.|..++|.+++.| .++|..+-..|.|.-+.+...-. .....-. ..+.+
T Consensus 480 h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l-----~n~y~~n----~~~y~ 548 (1189)
T KOG2041|consen 480 HGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVL-----TNSYPVN----PSIYS 548 (1189)
T ss_pred cCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceee-----eeccccC----chhee
Confidence 13455667788888876 57888899999999999987432 2222221 35889
Q ss_pred EEEccCCCEEEE-EeCCcEEEEEcC---CceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 942 IQFHKDQTRFLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 942 l~~s~dg~~la~-~~d~~i~lwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
++.+.+...+|+ -.-|.+.+.|+. +|..+.-+.......|+.+.|..|...|+.--....++|++-.
T Consensus 549 ~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgn 619 (1189)
T KOG2041|consen 549 IKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGN 619 (1189)
T ss_pred EeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCc
Confidence 999999999888 455777777765 4555554555567789999998887666655444556666533
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.5e-12 Score=129.63 Aligned_cols=260 Identities=12% Similarity=0.114 Sum_probs=165.4
Q ss_pred cccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC
Q 001363 734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813 (1092)
Q Consensus 734 ~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d 813 (1092)
...|++++|-|.+..-++.+..+.|.+|........ ...++ ..+..+... +..++| ..|+++.+.+|
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~-------~r~~~---~~s~~~~qv--l~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA-------NRNIR---MMSTHHLQV--LQDPGH-NPVTSMQWNED 206 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCccccc-------ccccc---cccccchhh--eeCCCC-ceeeEEEEcCC
Confidence 346788888887776777777778899986543210 00001 011111112 222335 78999999999
Q ss_pred CCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEE
Q 001363 814 DAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 814 g~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1092)
|..+++++ +..|.|||..++..+.-.....+.++-+.||| |+.+|+.++-|+..++|+...........--.+.|+.
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence 99999998 57899999999887766555567889999999 8999999999999999965543333333334568999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCce----------eeeeeee------cCCCCcCCCCCceEEEEccCCCEEEEEe
Q 001363 892 LVFSDALNILVSSGGDAQIFVWDVDGWGI----------QTCRSLQ------TPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 892 l~~spdg~~l~s~s~Dg~I~iwd~~~~~~----------~~~~~~~------~~~~~~~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
.+|+|+|.+|..+.. |.=++|.+.-.+. .....+. ...+.....+.+.+++|.|.|.+||+..
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 999999988765543 2334555432110 0001111 1112111225789999999999999953
Q ss_pred C---------CcEEEEEcCCceeeeeeccCC--CCCEEEEEEec---CCCEEEEEECCCcEEEEEcC
Q 001363 956 E---------THLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 956 d---------~~i~lwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
. ..|.+||....-.+...+.+- ......++|.| +|.+|..+=+-|.+.-|++.
T Consensus 365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 2 236677776544333322221 22355567776 66777777677777777654
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=1.1e-12 Score=128.77 Aligned_cols=241 Identities=12% Similarity=0.168 Sum_probs=169.1
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCC--CeEEEEEcCCCCCEEE-EEeCC------CcEEEEEc
Q 001363 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIA-IGMDD------STILIYNA 873 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~la-sg~~d------g~v~iwd~ 873 (1092)
....+++|.-|...++++.+...+||+++..+.....+.+.+ .+..+-|- .++|| +|+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999999999999987554333222222 33334443 23444 44433 38999997
Q ss_pred CCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 874 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 874 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
...+++.++. ...+|.++.+++| .++.. -.+.|+||.+...-.. ...+.+..... ...+++=.....+||.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~-l~~~et~~NPk----GlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL-LHVIETRSNPK----GLCSLCPTSNKSLLAF 153 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh-eeeeecccCCC----ceEeecCCCCceEEEc
Confidence 6677888877 7788999999876 55544 3567999999853211 12222222111 1222222233344554
Q ss_pred -E-eCCcEEEEEcCCcee-eeeeccCCCCCEEEEEEecCCCEEEEEECCCc-EEEEEcCCCceEEeeccccccCCCCccc
Q 001363 954 -V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCL 1029 (1092)
Q Consensus 954 -~-~d~~i~lwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1092)
| .-|+|.|-|+...+. ......+|.+.|.+++.+-+|..+||+|..|+ |||||..+|+.++.++... . ..
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d-----~A 227 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-D-----RA 227 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-c-----hh
Confidence 4 448999999986665 23457789999999999999999999999998 8999999999999987222 1 22
Q ss_pred cccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1030 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1030 ~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
.|+ +++|+| +..+||++++-|+|++|.+.+..
T Consensus 228 ~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 228 DIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 345 889999 58999999999999999997755
No 225
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.56 E-value=7.6e-13 Score=129.91 Aligned_cols=232 Identities=15% Similarity=0.177 Sum_probs=175.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC-C
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-V 473 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-~ 473 (1092)
--.+|+|.||++|+..+|++-....|.||............++..|...|+.++|+|.+. .|++|+.|...+||.. .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346999999999999999999999999999998887777789999999999999999998 6999999999999997 3
Q ss_pred CC--ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE----EecCCCCceEEEEEccCCCEEEEE
Q 001363 474 TG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 474 ~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
.+ ++.-.+..+....+++.|+|.+ ..+++|+....|.||=++....-. .-......|.++.|+|++-+|+++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 33 3344556688999999997654 689999999999999777654432 233445678999999999999998
Q ss_pred ecCCCCceeEEEEeC-----CC-------------CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001363 548 GTSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
+. |+..+++.. +. |+++..+.. ..+.+..+.|+|+|+.|+-.+.|.++.+-|...
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~---~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS---SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc---CCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 86 344555532 11 222333332 247899999999999999999999999999877
Q ss_pred Cc-eEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001363 610 VQ-LLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 610 ~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
.. .+....... -+..++.|-.+...+++
T Consensus 238 p~~~v~~~~~~~--lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 238 PSERVQSVATAQ--LPLLSVSWISENSVVAA 266 (361)
T ss_pred Cchhccchhhcc--CCceeeEeecCCceeec
Confidence 65 233332221 23456666554443333
No 226
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=6.5e-15 Score=161.57 Aligned_cols=343 Identities=18% Similarity=0.202 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCCcCcccccccc
Q 001363 171 RLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVAL 250 (1092)
Q Consensus 171 rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1092)
-|..|+-|.+++|+.+|+.|.++.+++|||..|.|++ |.+..+++-++..+. +.....
T Consensus 1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPE---------------pk~~~~ap~N~t~Rl----~~rel~--- 1071 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPE---------------PKRLLEAPLNMTGRL----GTRELQ--- 1071 (1516)
T ss_pred cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCC---------------hHHHhhcchhhhhcc----cchhhc---
Confidence 4999999999999999999999999999999999998 333222221111111 000000
Q ss_pred cCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCCccccCCCcceeeec
Q 001363 251 SLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTL 330 (1092)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l 330 (1092)
.+=.-.|+. ....+.+|.++ ...+++
T Consensus 1072 -------------------------------------~~y~gV~g~-------~~dr~~IFSRF----------r~w~~f 1097 (1516)
T KOG1832|consen 1072 -------------------------------------SFYSGVHGN-------RRDRQFIFSRF----------RSWRSF 1097 (1516)
T ss_pred -------------------------------------CcccccccC-------cccchhhHhhc----------ccchhh
Confidence 000000110 00111123222 223677
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
+.|...-+|++||-+.+ .|++|+..|.|+++++.+|..... ...|..+|+.+.=|.||..
T Consensus 1098 rd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred hccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcce
Confidence 88999999999999988 699999999999999999988765 5679999999999999998
Q ss_pred EEEEeCC--CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ec---C
Q 001363 411 LGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG---H 484 (1092)
Q Consensus 411 las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~---~ 484 (1092)
+++.+.- ....+|++.+- ....+++. .-.++.|+..... .++ |..-..+.+||++|+..+.++ .+ .
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r~~-gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-RAL-GTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred eeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-HHh-cccccceEEEecccCcHHHHhcCcchhh
Confidence 8776443 35789998752 22222332 3457888877553 333 333346899999999887663 22 1
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
...-+...|+|. ..+++ .|| .+||.+..+.+..+.... ....-.|+|.|..++..+ .|||+++
T Consensus 1230 ~y~~n~a~FsP~--D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS---------EIwD~RT 1292 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPC--DTLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS---------EIWDMRT 1292 (1516)
T ss_pred hhhccccccCCC--cceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec---------hhhhhHH
Confidence 222245556554 33444 344 469998877666554333 112336999999998864 4799999
Q ss_pred CeEEEEEeeccccCCceEEEEEcCCCCEEEEEe--C---------------CCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--D---------------DHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
.+.++...... -..+.|+..|+.++..- . -...|-++..+.+.+.++.... .+..
T Consensus 1293 F~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R---~~~D 1364 (1516)
T KOG1832|consen 1293 FKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDR---CLLD 1364 (1516)
T ss_pred HHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeeccc---chhh
Confidence 98887766544 35677888877665432 0 0234556666666777776543 3566
Q ss_pred EEEccCCCEEEEEeC
Q 001363 628 ICFNKNGTLLAVIAN 642 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~ 642 (1092)
+|-+|...++++...
T Consensus 1365 lct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1365 LCTEPTDSFLGVIEM 1379 (1516)
T ss_pred hhcCCccceEEEEec
Confidence 777777777766543
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2e-12 Score=146.55 Aligned_cols=238 Identities=10% Similarity=0.112 Sum_probs=157.5
Q ss_pred CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe---CCCEEEEEEccCCCcccc
Q 001363 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---SKHIVQLYAYHGGSDARQ 433 (1092)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~---~d~~i~iwd~~~~~~~~~ 433 (1092)
..|.+||.+.+.... +..+...+.+.+|||||+.||..+ .+..|.+|++.+|+...
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 368888887665432 445677899999999999999764 24579999998875322
Q ss_pred eEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC-Ce
Q 001363 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK 510 (1092)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~ 510 (1092)
+....+.+...+|+|||+. ++++.+.++ .|.+||+++++..+ +..+...+....|+ +||+.|+..+.+ |.
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS--PDG~~I~f~s~~~g~ 310 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF--PDSQNLAYTSDQAGR 310 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC--CCCCEEEEEeCCCCC
Confidence 2223334557899999995 233334444 58999998887654 33344556677775 467777766654 55
Q ss_pred EEEE--EcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 511 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 511 i~vw--d~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
..+| |+.++.. ..+...........|+|||++++..+... +...|++||+.+++... +... .......|+|
T Consensus 311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~Sp 383 (429)
T PRK03629 311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDT----FLDETPSIAP 383 (429)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCC----CCCCCceECC
Confidence 5555 5554433 33333444556789999999998876432 35679999998887543 3321 1234578999
Q ss_pred CCCEEEEEeCCCc---EEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 589 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 589 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
||+.++.++.++. +.++++ +|.....+..+. ..+...+|+|
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence 9999999887764 677777 455555555432 3467788876
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=1.8e-14 Score=147.74 Aligned_cols=272 Identities=16% Similarity=0.174 Sum_probs=213.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
.......+.++.+|++|+.|+..|.|..+|+.++.... ++. -...|.++.|..+.+ +++ ....+.++||| ..
T Consensus 128 ~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~A-VAQK~y~yvYD-~~ 199 (545)
T KOG1272|consen 128 PEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFA-VAQKKYVYVYD-NN 199 (545)
T ss_pred cccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHH-hhhhceEEEec-CC
Confidence 34567789999999999999999999999999986554 332 345688999998887 444 45577899999 88
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
|..++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.|.. +
T Consensus 200 GtElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----n 272 (545)
T KOG1272|consen 200 GTELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----N 272 (545)
T ss_pred CcEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----C
Confidence 8889988755 467788886654 57888999999999999999998888888888999999998887777765 7
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
++|.+|.+.+.+.+..+..|. ++|.++++.++|.++++++.|..++|||++....+.+..... ....+++|..|
T Consensus 273 GtVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg 346 (545)
T KOG1272|consen 273 GTVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG 346 (545)
T ss_pred ceEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc
Confidence 789999999999999999988 999999999999999999999999999999888776665432 35778888766
Q ss_pred CEEEEEeCCCeEEEEECCCC-----ceeeecccccCceeeeeecCCCccccccccCCcee
Q 001363 635 TLLAVIANENRIKILETPES-----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 689 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 689 (1092)
. ||.+ ....+.||.-... .....-......|..+.|+|....+++|-..|-..
T Consensus 347 l-LA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 347 L-LALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred c-eeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCcee
Confidence 3 3433 3457889953321 11111112234889999999999988877665333
No 229
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=5e-11 Score=128.70 Aligned_cols=533 Identities=10% Similarity=0.090 Sum_probs=321.8
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
...|++|+.... ++|+|+.||.++|-.+.+...-.... .+...........+.||.+.|.-+.|+.+.+.|-+..
T Consensus 16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred eEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 678999999988 69999999999999987654322100 0112222333446899999999999999999999999
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecCCcCeEEEeec
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~i~~~ 494 (1092)
.+|.|.+|-+-.|.-..... -......|.+++|+.||. .++....||.|.|=.++..+.- +.+++. ....+.|
T Consensus 91 t~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~w- 164 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLW- 164 (1189)
T ss_pred CCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceee-
Confidence 99999999998876544321 123556799999999999 6777788888877665433221 122221 1223455
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCC-------ceE----EecCCCCceEEEEEc--------cCCCEEEEEecCCCCce
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAYS--------ANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~----~~~~~~~~i~~~~~s--------~dg~~l~~~~~~~~~~~ 555 (1092)
++|.+.++.+-.+|.++++|.+..- +.. .+......+..+.|. ||...++.|.. ++
T Consensus 165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG 239 (1189)
T KOG2041|consen 165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG 239 (1189)
T ss_pred -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence 4466677777788999999865321 111 111122234444442 57778888876 44
Q ss_pred eEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceEEEEeCCCCCCCC
Q 001363 556 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 556 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
.+.+..-.+ ..++..-.+ -.+....|+++|..+++++.+ +.|.+|.. -|..+.++..++. .|
T Consensus 240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CI 311 (1189)
T ss_pred eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--ee
Confidence 455543322 222222222 357788999999999998743 24555543 4677778877654 58
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCcee--------eecccccCceeeeeecCCCccccccccCCceeecCCCCCC
Q 001363 626 PRICFNKNGTLLAVIANENRIKILETPESNSV--------DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 697 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 697 (1092)
+.++|-..|-.+|.+- |+.|++=+++..-.. ........+.
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~------------------------------ 360 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQ------------------------------ 360 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcc------------------------------
Confidence 9999988777776654 567777665543111 1111111111
Q ss_pred CccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccc
Q 001363 698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 777 (1092)
Q Consensus 698 ~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 777 (1092)
-.|.+||..+.+.... ......++++..+.-.|+.-..+|.+.-++.-.+. ...
T Consensus 361 ----------y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~-------~~~ 414 (1189)
T KOG2041|consen 361 ----------YGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR-------SRV 414 (1189)
T ss_pred ----------eEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhhcc-------cce
Confidence 2355676543322111 11233455666665555555555554433100000 000
Q ss_pred cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee----------------------
Q 001363 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------------------- 835 (1092)
Q Consensus 778 ~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~---------------------- 835 (1092)
..+.+.+.- |. .+. ..-..|.-.-..-++.+++.++...+.+|.....+.
T Consensus 415 ~~l~LCNSI-GT-----~lD--~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ 486 (1189)
T KOG2041|consen 415 YFLQLCNSI-GT-----SLD--YKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPE 486 (1189)
T ss_pred EEEeeeccc-CC-----cCC--CCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCcc
Confidence 000000000 00 000 011122222333477788888888888887432110
Q ss_pred ----------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001363 836 ----------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905 (1092)
Q Consensus 836 ----------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 905 (1092)
..++.+..++|.+++.+ .++|.++-..|.|.-|.+.+........ -+..|.++++.-+...+|...
T Consensus 487 ga~d~~l~ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId 562 (1189)
T KOG2041|consen 487 GAQDRTLEYSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIID 562 (1189)
T ss_pred chhhceeeccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhh
Confidence 12345566788888886 4699999999999999999877666654 456688999988888999988
Q ss_pred CCCcEEEEEcCC-CceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCC
Q 001363 906 GDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 966 (1092)
Q Consensus 906 ~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~ 966 (1092)
.-|.+.+.|+.- ........+...+. ..|..+.|..|+..+++- ....++|++-.+
T Consensus 563 ~~gv~tf~dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgnd 620 (1189)
T KOG2041|consen 563 LVGVVTFQDLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGND 620 (1189)
T ss_pred hhceeeeeecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcC
Confidence 889999988872 22222222222222 258899999998877764 444577777543
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.1e-12 Score=146.17 Aligned_cols=237 Identities=13% Similarity=0.071 Sum_probs=161.0
Q ss_pred CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC---CCEEEEEEccCCCcccc
Q 001363 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1092)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 433 (1092)
..|.+||...+.... +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 478888886554332 5568889999999999999998763 468999999987532
Q ss_pred eEEEcccccceeEEEEecCCCcEEEEEEeCCCc--EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEec-CC-
Q 001363 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG- 509 (1092)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg- 509 (1092)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.+++. ..+..+........|+ +||+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence 34456677889999999995 3445665655 77789888765 4455566556667775 46777776653 34
Q ss_pred -eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 510 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 510 -~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
.|.++|+....... +......+....|+|||+.|+...... +...|.+||..++.. +.+.. . ..+....|+|
T Consensus 314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp 386 (435)
T PRK05137 314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP 386 (435)
T ss_pred CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence 57777876554433 333344566788999999998876432 346799999866543 33322 1 2456788999
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 589 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 589 ~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
||+.++..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 99998775532 3578888876554 3443221 255667766
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.7e-12 Score=136.87 Aligned_cols=283 Identities=13% Similarity=0.187 Sum_probs=204.8
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
+|...-+.+..||||+|++|+|..--.|++||+..-.....+.+ ....|.-.-+|-|-..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~ 109 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS 109 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence 46668889999999999999999999999999987654432111 23456666667676677
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
+.-..|.+|.+-.-.. ... .++ -...-..++++.-... |+.++....|+-.+++.|+.+..+....+.++++
T Consensus 110 v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred eEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence 7777787776644322 100 111 1112234555544443 4444445578999999999999998888999999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------C-----CceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------G-----LGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~-----~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
.+++.. .+|++|+.+|.|.+||.+.......+... . ..|+++.|+.+|-.+++|.. .|.+++|
T Consensus 182 ~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy 255 (703)
T KOG2321|consen 182 SINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY 255 (703)
T ss_pred eecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence 886543 68999999999999999887665543322 1 24899999999999999976 6679999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
|+++.+.+..-.... .-+|..+.|.+.+ +.+++. ....++|||-.+|+....+... ..++.+|+-|++.+++
T Consensus 256 DLRa~~pl~~kdh~~--e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGY--ELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFF 329 (703)
T ss_pred EcccCCceeecccCC--ccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc---CCcCceeeecCCceEE
Confidence 999888765433222 3678889997763 344443 4578999999999999888654 4589999999999999
Q ss_pred EEeCCCeEEEEECCC
Q 001363 639 VIANENRIKILETPE 653 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~ 653 (1092)
++-.++.+..|-++.
T Consensus 330 ~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 330 TANESSKMHTYYIPS 344 (703)
T ss_pred EecCCCcceeEEccc
Confidence 999988887776654
No 232
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.53 E-value=1.3e-12 Score=128.26 Aligned_cols=206 Identities=14% Similarity=0.133 Sum_probs=163.6
Q ss_pred CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCC---ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcC-C
Q 001363 801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMT---FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-S 875 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~ 875 (1092)
...+|+|.+|++|+..+|++.. ..+.||.... .+..+++..|...|+.+.|+| ..+.|++++.|..-++|... .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 3568999999999999999975 6899998764 457889999999999999999 88899999999999999994 3
Q ss_pred c--eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 876 S--EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 876 ~--~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
+ ++.-.+..|...++++.|+|.++.+|+||..+.|.||=++... ...+-+...... ...|.+++|.|++-+|++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN--dWWVsKhikkPi--rStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN--DWWVSKHIKKPI--RSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc--ceehhhhhCCcc--ccceeeeeccCCcceecc
Confidence 3 3455566699999999999999999999999999999887632 111111111111 136999999999999999
Q ss_pred -EeCCcEEEEEcC-----C-------------ceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCce
Q 001363 954 -VHETHLAIYEAE-----E-------------LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 954 -~~d~~i~lwd~~-----~-------------~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
+.|+..+|+..- . |+.+.++ ....+.|..+.|||+|..|+-.+.|+++.+=|......
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence 589998888641 1 1222221 13478899999999999999999999999999887753
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.3e-12 Score=148.22 Aligned_cols=234 Identities=14% Similarity=0.105 Sum_probs=153.2
Q ss_pred ccCCCcceeeecccCCCCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC
Q 001363 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~ 396 (1092)
+.+......+.+..+.+.+...+|||||++++.+.. .+..|.+||+.+|+.... ....
T Consensus 183 ~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l--------------------~~~~ 242 (429)
T PRK03629 183 VSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--------------------ASFP 242 (429)
T ss_pred EEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc--------------------cCCC
Confidence 344444444556667778999999999996544432 235799999998865432 2223
Q ss_pred CcEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-CCc--EEEE
Q 001363 397 VSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVW 470 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~--i~vw 470 (1092)
+.+..++|||||+.|+.. +.++ .|.+||+.+++.. .+..+...+....|+|||+ .|+..+. ++. |.++
T Consensus 243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKV 316 (429)
T ss_pred CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEE
Confidence 345568999999999876 3344 5899999887533 2444555678899999999 4544443 344 5555
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
|+.+++. ..+..+........|+ +||++|+..+.+ ..|.+||+.++.... +.. ........|+|||+.++..
T Consensus 317 d~~~g~~-~~lt~~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 317 NINGGAP-QRITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYS 391 (429)
T ss_pred ECCCCCe-EEeecCCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEE
Confidence 7776654 3443344445556664 577787776543 358888988765443 222 1233467899999999998
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
+.++. ...+++++. +|.....+.++. +.+...+|+|
T Consensus 392 s~~~~-~~~l~~~~~-~G~~~~~l~~~~---~~~~~p~Wsp 427 (429)
T PRK03629 392 SSQGM-GSVLNLVST-DGRFKARLPATD---GQVKFPAWSP 427 (429)
T ss_pred EcCCC-ceEEEEEEC-CCCCeEECccCC---CCcCCcccCC
Confidence 86543 556888887 455556666655 6677778876
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=4.1e-14 Score=145.22 Aligned_cols=273 Identities=18% Similarity=0.189 Sum_probs=211.7
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.-..+.|+.+|++ ++.|+..|.|..+|+.++....... -...|..+.|-.+.+++|++
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA- 188 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA- 188 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh-
Confidence 6678999999995 5667777999999999998876433 23578899999999999998
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
....++|||-.. ..+. .++.| ..|..+.|.|--- +|++++..|.++--|+.+|+.+..+....+.+..++-+|
T Consensus 189 QK~y~yvYD~~G-tElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 189 QKKYVYVYDNNG-TELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred hhceEEEecCCC-cEEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 455699999765 3333 34444 3589999999765 899999999999999999999999988888888888765
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
.+ ..+-+|...|+|.+|.....++...+..|.++|.++++.++|+++++.+. +..+.|||+++-..+.++.. .
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t-p 334 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT-P 334 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-C
Confidence 43 57889999999999999999999999999999999999999999999987 66699999998877666655 2
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCc--eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001363 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1092)
.+...+++|..| +++.+....|.||. .-.+. .-...-.|.-...|..+.|.|-...|-+|...|.-.|.
T Consensus 335 ---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 335 ---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred ---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 467778888765 55666667899994 33322 11111112222368899999988888887766544443
No 235
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.53 E-value=5.9e-09 Score=126.87 Aligned_cols=569 Identities=11% Similarity=0.127 Sum_probs=308.0
Q ss_pred CCCCceEEeecCCCceEEEEEcCCCcEEEE----ecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLW----DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~dg~i~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
..+.|.++.|-++.. -+..+..+|.|.+. +..+...... ..-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~V--------------------G~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEIV--------------------GSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEEE--------------------EEEcCcEEEEEECCCc
Confidence 346899999999997 46777788999999 5555443332 2245789999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-----------
Q 001363 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR----------- 477 (1092)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~----------- 477 (1092)
..||..+.++++.+-+-.- +.+. +..-+.. .|-. + ..++.|.-+.=.-+.-..|+.
T Consensus 133 Ella~vT~~~~l~~mt~~f-d~i~---E~~l~~~-----~~~~-~---~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDF-DPIS---EVPLDSD-----DFGE-S---KHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred CEEEEEeCCCEEEEEeccc-eEEE---EeecCcc-----ccCC-C---ceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 9999999999887765321 1111 1111110 1100 1 123322211111111011111
Q ss_pred ---eEEEecCCcCeEEEeecccCCccEEEEEec---C---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 478 ---TYSFEGHGAPVYSLCPHAKENIHFIFSISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 478 ---~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
...+. +...-..++| .+||.++++.+. . ..+|||+-+ +..........+--.+++|.|.|+++++..
T Consensus 200 ~~d~~~~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q 275 (928)
T PF04762_consen 200 KVDEGKLS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQ 275 (928)
T ss_pred ccccCccc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence 01122 3333445555 779999998875 3 469999754 332223333333345789999999999887
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeecc-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE--EEEeCCCCCCCC
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPEN 625 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v 625 (1092)
. ......|..|. ++|-.-..|.-.. .....|..+.|++++..|+..-.|. |.+|...+.... +.+..... ..+
T Consensus 276 ~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~ 351 (928)
T PF04762_consen 276 R-LPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESV 351 (928)
T ss_pred E-cCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCC
Confidence 5 23345666776 4555544444331 1236799999999999999877655 999998887643 33333322 234
Q ss_pred ceEEEcc-CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceee
Q 001363 626 PRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 704 (1092)
Q Consensus 626 ~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 704 (1092)
..+.|+| +...|.+.+.+|.+..++..-. +..++.. +|+..-.+..
T Consensus 352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~---------------v~~s~~~------------------~~~D~g~vaV 398 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTSNGQYEIYDFAWD---------------VSRSPGS------------------SPNDNGTVAV 398 (928)
T ss_pred CceEECCCCCCEEEEEecCCcEEEEEEEEE---------------EEecCCC------------------CccCceEEEE
Confidence 5699999 4556788887788776654311 0000000 0111111111
Q ss_pred ccccccceeccc---cccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001363 705 EAENKSEVEKPL---FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 705 ~~d~~i~lw~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 781 (1092)
-...++++-.+. .+.|.....+. -...|..++|++++..+++...||.+.+|.++...............+
T Consensus 399 IDG~~lllTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~- 472 (928)
T PF04762_consen 399 IDGNKLLLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSI- 472 (928)
T ss_pred EeCCeEEEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhc-
Confidence 111123332221 11222222332 346799999999999899999999999999766432210000000000
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC----CeEEEEEcCCce---eeEEecCCCCCeEEEEEcCC
Q 001363 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPH 854 (1092)
Q Consensus 782 ~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~ 854 (1092)
.. .. ...... ......+..++|..+..+++.... ..+.++++...+ .........+.+..+...+
T Consensus 473 --~~--~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 544 (928)
T PF04762_consen 473 --SL--DS-MDISDS--ELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP- 544 (928)
T ss_pred --cc--cc-cccccc--ccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-
Confidence 00 00 000000 013456778888888877776653 458888874332 2333333445555566665
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcee-eEeeccccCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC
Q 001363 855 DNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG 931 (1092)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg--~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 931 (1092)
+...++.-..+|.+...+...... +..|..-...+..+.+.... ..++.-+..|.+++ .+ . .+.
T Consensus 545 ~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la---- 611 (928)
T PF04762_consen 545 DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA---- 611 (928)
T ss_pred CCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe----
Confidence 444466677899988776654322 22333222222222332222 14444455554443 11 1 111
Q ss_pred CcCCCCCceEEEEccCCCEEE-EEeCCcEEEEEcC-CceeeeeeccCC----CCCEEEEEEecCCCEEEEEECCCcEEEE
Q 001363 932 VMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAE-ELTCLKQWFPIS----SVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 932 ~~~~~~~v~~l~~s~dg~~la-~~~d~~i~lwd~~-~~~~~~~~~~~h----~~~v~~l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
..++++++ .+.+|+ +.....+++.++. ....+......+ ...+.. -..|..|+++-....=.|-
T Consensus 612 -----~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~---VERGsriVt~vp~~~~vVL 681 (928)
T PF04762_consen 612 -----SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRR---VERGSRIVTAVPSDTSVVL 681 (928)
T ss_pred -----cCCceEEE--EcCEEEEEecCceEEEEECcCchhhcccccCcccccccccccc---CccCCEEEEEeCCCceEEE
Confidence 13666666 344444 4666778888887 111111111111 112222 2368888887765566677
Q ss_pred EcCCCceE
Q 001363 1006 EASNLEVQ 1013 (1092)
Q Consensus 1006 d~~~~~~~ 1013 (1092)
.++.|.+.
T Consensus 682 QmPRGNLE 689 (928)
T PF04762_consen 682 QMPRGNLE 689 (928)
T ss_pred EcCCCchh
Confidence 88888775
No 236
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.9e-11 Score=129.54 Aligned_cols=287 Identities=11% Similarity=0.115 Sum_probs=188.3
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
......++|++|+ ++|.+ .+..++|++..++..+.+ -....+.++.|||-|.+|.+-
T Consensus 35 ~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T~ 91 (566)
T KOG2315|consen 35 RPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLTW 91 (566)
T ss_pred CcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeecccccccccc
Confidence 3477889999998 67765 457899999998864432 122378899999999999873
Q ss_pred -----eCC-----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 415 -----YSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 415 -----~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
..+ ..+.+|+++++.... .+......-++..|+.|.. ++.=-..+.+.+|+...-+.+. -.-|
T Consensus 92 e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~ 164 (566)
T KOG2315|consen 92 EPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLS 164 (566)
T ss_pred cccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eeee
Confidence 122 347899999953322 1222222226899999987 4433345679999987743332 2236
Q ss_pred CcCeEEEeecccCCccEEEE-----EecCCeEEEEEcCCCCceEEec---CCCCceEEEEEccCCCEEEEE-ecCC----
Q 001363 485 GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSC-GTSK---- 551 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~~l~~~-~~~~---- 551 (1092)
...|+.+.+++.+.-..+++ .+.-+.+++|.+.......... .....-..+.|++-|.-|++. +.+-
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 77888888888765556654 3556679999876222211111 111122356788877654432 2211
Q ss_pred ---CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001363 552 ---EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 552 ---~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
-|+..+++.+.........+.. .++|.++.|+|+++.+++ |-.-..+.|||++ +..+..+.. ..-+
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN 315 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRN 315 (566)
T ss_pred ccccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCcc
Confidence 2456788888874444333332 489999999999987766 5577889999985 455555532 2347
Q ss_pred eEEEccCCCEEEEEeCC---CeEEEEECCCCceeeec
Q 001363 627 RICFNKNGTLLAVIANE---NRIKILETPESNSVDAA 660 (1092)
Q Consensus 627 ~v~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~ 660 (1092)
++-|+|.|++++.++.+ |.|.|||+.+.+.+..+
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 89999999999988874 88999999886655444
No 237
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.52 E-value=9e-12 Score=130.09 Aligned_cols=282 Identities=13% Similarity=0.102 Sum_probs=190.4
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
.-++..+.|||.|+ +|++... ..|.+|.-..+..+..+ ....|..+.|||.++||.+
T Consensus 32 ~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcch-heehhhc-cceEEccccchhheeee---------------------ecCCceecccCcccceeee
Confidence 44788999999998 5666544 56999998877654321 2357999999999999999
Q ss_pred EeCCC---------------EEEEEEccCCCcccceEEEcccccc--ee-EEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 414 AYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 414 ~~~d~---------------~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
-+..+ .+.+||..+|..+. .+.+...+ .+ -+.|+-|.+ +++-- ....+.|+++ ++
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~ 161 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TD 161 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CC
Confidence 75443 38999999987655 44444444 44 678999988 33332 2346999997 44
Q ss_pred cee-EEEecC-CcCeEEEeecccCCccEEEE-----EecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 476 SRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 476 ~~~-~~~~~~-~~~v~~i~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
... ..+..- ...|....++|..++..|+. ...++++++|.+.....+.........-..+.|.+.|++|++-.
T Consensus 162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence 322 122111 24567777877766666554 45678899999886665554443333344678889998876433
Q ss_pred c-------CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceEEEEeCC
Q 001363 549 T-------SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 549 ~-------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
. +.-++..++++++....+.... ... ++|...+|.|.++.+++. -.+..+.++|++.. ....+...
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~ 316 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERSIPVEK-DLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ 316 (561)
T ss_pred EEeeecccceeccceEEEEeecccccceec-ccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc
Confidence 2 1123466888888744332222 333 899999999999887664 47888999998765 44443322
Q ss_pred CCCCCCceEEEccCCCEEEEEeCC---CeEEEEECCCC
Q 001363 620 GGLPENPRICFNKNGTLLAVIANE---NRIKILETPES 654 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~ 654 (1092)
. -+.+.|+|.++++++++-| |.+.+|+....
T Consensus 317 ~----rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 317 K----RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred c----cccccccCcccEEEEecCCccccceEEeccCCc
Confidence 2 3678999999999998765 67888876643
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.9e-12 Score=147.67 Aligned_cols=233 Identities=15% Similarity=0.131 Sum_probs=152.8
Q ss_pred ccCCCcceeeecccCCCCceEEeecCCCceEEEEEcC---CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC
Q 001363 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1092)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h 395 (1092)
+.+......+.+..|...+.+.+|||||++ |+..+. +..|.+||+.+++... +..+
T Consensus 188 i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~ 246 (433)
T PRK04922 188 VADSDGYNPQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VASF 246 (433)
T ss_pred EECCCCCCceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------eccC
Confidence 344444555667777778999999999996 454442 3469999998887543 2233
Q ss_pred CCcEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-CCCc--EEE
Q 001363 396 GVSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKV 469 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~~--i~v 469 (1092)
.+...+++|||||+.|+.. +.++ .|++||+.+++.. .+..+.......+|+|||++ ++..+ .++. |.+
T Consensus 247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYR 320 (433)
T ss_pred CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEE
Confidence 4455678999999988754 4444 6999999987632 34456555678899999994 54444 4444 677
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
+|+.+++... +..+.......+|+ +||+.|+..+.++ .|.+||+.++... .+. +........|+|||++++.
T Consensus 321 ~dl~~g~~~~-lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~ 395 (433)
T PRK04922 321 VAASGGSAER-LTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLY 395 (433)
T ss_pred EECCCCCeEE-eecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEE
Confidence 7877776433 32233334456674 4677877665443 5899998776654 332 2223456799999999888
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
.+.. .+...|++++...+ ....+..+. +.+...+|+|
T Consensus 396 ~s~~-~g~~~L~~~~~~g~-~~~~l~~~~---g~~~~p~wsp 432 (433)
T PRK04922 396 ATRE-GGRGVLAAVSTDGR-VRQRLVSAD---GEVREPAWSP 432 (433)
T ss_pred EEec-CCceEEEEEECCCC-ceEEcccCC---CCCCCCccCC
Confidence 7754 34667999998544 444444333 4556666765
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.4e-12 Score=145.62 Aligned_cols=238 Identities=15% Similarity=0.120 Sum_probs=157.4
Q ss_pred CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC---CCEEEEEEccCCCcccc
Q 001363 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1092)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 433 (1092)
..|.+||...+.... +..|...+.+.+|+|||+.|+..+. +..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 468899986554332 4557788999999999999998864 347999999887532
Q ss_pred eEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe-cCCe
Q 001363 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGK 510 (1092)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~ 510 (1092)
.+..+.+...+.+|+|||+. ++++.+.++ .|++||+.+++.. .+..+.......+|+ +||+.|+..+ .+|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence 23344455668899999995 334555555 5999999888753 455555555667774 4677777665 4455
Q ss_pred --EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 511 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 511 --i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
|.++++.+++.. .+..........+|+|||++++....+ .+...|++||+.+++... +.. . .......|+|
T Consensus 316 ~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~-Lt~-~---~~~~~p~~sp 388 (433)
T PRK04922 316 PQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRT-LTP-G---SLDESPSFAP 388 (433)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEE-CCC-C---CCCCCceECC
Confidence 555566554432 222333344568999999999887642 234579999998887653 321 1 2334568999
Q ss_pred CCCEEEEEeCC---CcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 589 AKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 589 ~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
||++++..+.+ +.+.+++... .....+..+. ..+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 99998876643 4578888854 4444444322 2356667765
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=3.2e-10 Score=124.94 Aligned_cols=210 Identities=14% Similarity=0.202 Sum_probs=137.3
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEcCC-ceeeEE---e----------cCCCCCeEEEEEcCCCCCEEEEEeC-CC
Q 001363 804 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGMD-DS 866 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~d~~~lasg~~-dg 866 (1092)
....++++|++++|+++. +|.+.++++.. +..... + +.......++.|+| +++++++... ..
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345678888888888886 58888888875 333222 1 11234678999999 8887777543 34
Q ss_pred cEEEEEcCCce--ee--Eeec-cccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC--CCceeeeeeeecCCCCcCCCCC
Q 001363 867 TILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS 938 (1092)
Q Consensus 867 ~v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~spdg~~l~s~s-~Dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 938 (1092)
.|.+|++.... .. ..+. ........++|+||++++.... .+++|.++++. .+.......+............
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 21 2222 2445678999999999886654 57889999998 5544444444443222211125
Q ss_pred ceEEEEccCCCEEEEE--eCCcEEEEEcC--Ccee--eeeeccCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEEc--CC
Q 001363 939 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SN 1009 (1092)
Q Consensus 939 v~~l~~s~dg~~la~~--~d~~i~lwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~Dg~i~vwd~--~~ 1009 (1092)
...++++|||++|.++ ..+.|.+|++. +++. +.. ..........++|+|||++|+++. .++.|.+|++ .+
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~-~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT-VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE-EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE-EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 7899999999999986 45689999993 3332 222 222244588999999999999887 5578999976 46
Q ss_pred CceEEe
Q 001363 1010 LEVQCR 1015 (1092)
Q Consensus 1010 ~~~~~~ 1015 (1092)
|.+...
T Consensus 326 G~l~~~ 331 (345)
T PF10282_consen 326 GKLTPV 331 (345)
T ss_dssp TEEEEE
T ss_pred CcEEEe
Confidence 665533
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.7e-12 Score=144.73 Aligned_cols=223 Identities=14% Similarity=0.100 Sum_probs=145.8
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44577889999999999999987643 469999999886432 3334455678999999995 334667787766
Q ss_pred EEE--CCCCceeEEEecCCcCeEEEeecccCCccEEEEEec-CCeEEEEEcC--CCCceEEecCCCCceEEEEEccCCCE
Q 001363 469 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 469 vwd--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
||. +.++. ...+..+........|+ +||+.|+..+. +|...+|.++ .+.. ..+...........|+|||++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFS--PDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEc--CCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCE
Confidence 665 44444 45555555555666774 46777765554 5677777654 3322 222222333446789999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEEEeCCC
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~ 620 (1092)
++..+..+ +...|++||..+++......+ .......|+||++.|+.++.++ .+.+.+. ++.....+..+.
T Consensus 342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~ 414 (427)
T PRK02889 342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG 414 (427)
T ss_pred EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence 98776432 245799999988876543322 2235678999999998876444 3555566 455555554332
Q ss_pred CCCCCceEEEcc
Q 001363 621 GLPENPRICFNK 632 (1092)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1092)
..+...+|+|
T Consensus 415 --g~~~~p~wsp 424 (427)
T PRK02889 415 --GDVREPSWGP 424 (427)
T ss_pred --CCCCCCccCC
Confidence 2356677776
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.1e-12 Score=145.33 Aligned_cols=235 Identities=20% Similarity=0.197 Sum_probs=150.1
Q ss_pred cCCCcceeeecccCCCCceEEeecCCCceEEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001363 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
.+......+.+..+.+.+.+.+|||||++++.+...+ ..|.+||+.+|+... +....+
T Consensus 181 ~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g 240 (427)
T PRK02889 181 SDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKG 240 (427)
T ss_pred ECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCC
Confidence 3334444556667778999999999998644443222 459999999887543 222345
Q ss_pred cEEEEEECCCCCEEEE-EeCCCEEEEEEc--cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE--C
Q 001363 398 SVNRVVWSPDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD--A 472 (1092)
Q Consensus 398 ~V~~l~~spdg~~las-~~~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd--~ 472 (1092)
.+.+.+|||||+.|+. .+.++...||.+ .++. .+ .+..+.+.+....|+|||+.+ ++++..++...||. +
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~l-~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRSI-YFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCEE-EEEecCCCCcEEEEEEC
Confidence 5678999999999875 566776666654 4443 22 345566666788999999952 23333456666665 4
Q ss_pred CCCceeEEEecCCcCeEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001363 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
.+++. ..+..+........| ++||++|+..+.++ .|.+||+.+++...... ........|+|||+.|+..+.
T Consensus 316 ~~g~~-~~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 316 SGGAA-QRVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CCCce-EEEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEe
Confidence 45543 222222223334556 45778888776654 59999998776543322 223467899999999998876
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
.+ +...+++.+. +|.....+..+. +.+...+|+|-
T Consensus 391 ~~-g~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~ 425 (427)
T PRK02889 391 QG-GRSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGPF 425 (427)
T ss_pred cC-CCEEEEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence 43 3566777777 455555555443 55666677763
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=3.7e-12 Score=128.72 Aligned_cols=272 Identities=13% Similarity=0.125 Sum_probs=194.6
Q ss_pred CCCceEEeecCCCceEEEEE-cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVG-TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg-~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
.+.|+.++|.-|++.=+..+ +.|-.+............. .||+.. ......+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence 45788888887765433333 3566677776666554432 233221 23345666666665 33667
Q ss_pred EEeCCCEEEEEEccCCCcc-cceEEEcccccceeEEEEecCCCcEEEEEEeCC--CcEEEEECCCCceeEEEecC-----
Q 001363 413 VAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH----- 484 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~~~~~~~~~~----- 484 (1092)
+|-.+|.+.+|..+.+..- .....+..+ ..+..+.-++...+ ++++||.. ..+.|||+++.+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 7788999999999854311 111123333 34667777777665 67779988 88999999988665543321
Q ss_pred ----CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 485 ----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 485 ----~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.-+++++.|.+..+...|++++.-+.+++||.+.++. ...+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1245566776654578999999999999999997664 4577888889999999999999999865 556999
Q ss_pred EeCCCCeEEEE-EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 560 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 560 wd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
+|.+++..... +.+.. +.+.++..+|..+++++++-|..+||+|+.+.+++...-... ..+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 99999998877 77777 899999999999999999999999999999977765554332 245555544
No 244
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.48 E-value=1.2e-10 Score=121.73 Aligned_cols=358 Identities=12% Similarity=0.152 Sum_probs=227.2
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001363 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1092)
.+|...+......+....-++..+++||.|.+|++.... .|.+|+...+..+..+.. ..|..+.|+|.++
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-----~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~k 84 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-----GVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEK 84 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-----ceEEccccchhheeeeec-----CCceecccCcccc
Confidence 345444444444444456688899999999999987642 399999887776555554 4699999999999
Q ss_pred EEEEEeCCC---------------cEEEEECCCCceEEEEeCCCCCCCCc-eEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001363 592 QILAAGDDH---------------VIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 592 ~l~~~s~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
+|.+-+..+ .+.+||..+|..+..+.......... -+.|+.+.+++|-. ....+.|+++ ++.
T Consensus 85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n 162 (561)
T COG5354 85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN 162 (561)
T ss_pred eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCc
Confidence 999865333 49999999999999887664432233 68899888877655 3357889886 221
Q ss_pred eee-eccc-ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccc
Q 001363 656 SVD-AAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 733 (1092)
Q Consensus 656 ~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~ 733 (1092)
... .+.. ....
T Consensus 163 ~~~~p~~~lr~~g------------------------------------------------------------------- 175 (561)
T COG5354 163 IEEHPFKNLRPVG------------------------------------------------------------------- 175 (561)
T ss_pred cccCchhhccccc-------------------------------------------------------------------
Confidence 110 0000 0122
Q ss_pred cccEEEEEEecCCc--EEEE-----eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001363 734 ANKISRLTYNNGGQ--AIFA-----LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 734 ~~~i~~l~~s~~g~--~l~~-----~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~ 806 (1092)
|....++|.|. .|+. .+..+++++|.++.++. +.+..+ ....-.
T Consensus 176 ---i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~ 226 (561)
T COG5354 176 ---ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGV 226 (561)
T ss_pred ---eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe----------------------eeeeee----Eeeccc
Confidence 22333333211 1111 12345666666553321 111111 011112
Q ss_pred EEEEecCCCEEEEEe------------CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE--EeCCCcEEEEE
Q 001363 807 CFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYN 872 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las--g~~dg~v~iwd 872 (1092)
.+.|.+.|+++++-- ...+.|+++..... .....-.++|...+|.| .++.+++ |..+-.+-++|
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecc-cCCceeEEecccccceeecc
Confidence 345556666554321 24588888874333 33335678999999999 5555444 35778999999
Q ss_pred cCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC
Q 001363 873 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 873 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
++.. ++..+. ..+=..+.|||.+++++.++-| |.|-+||..+.- .++....+. ..+.+.|||||.
T Consensus 305 lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~q 372 (561)
T COG5354 305 LRGN-LRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQ 372 (561)
T ss_pred cccc-eEEecC--CcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCce
Confidence 9864 443333 3444568999999999998876 569999998743 233233332 356788999999
Q ss_pred EEEEE-------eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCC
Q 001363 950 RFLLV-------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 950 ~la~~-------~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg 1000 (1092)
++.+. .|..+.|||+...... ..+.+.|.|.|++..+.+.+.
T Consensus 373 F~~~~~ts~k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 373 FYDTDTTSEKLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred EEEecCCCcccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 99873 3678999998644332 356678889899888877765
No 245
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=5.3e-13 Score=139.62 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=115.3
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeE-----------EeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-----------IRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
..|+|+.|-|.++.++.++-.+|.+.++|.+--.... .+.+..|--....++... +.--++.|...+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~--w~~~~g~in~f~ 297 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR--WHIGEGSINEFA 297 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccce--eEecccccccee
Confidence 5999999999887777777888999999763211000 011111110111011111 111345899999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
|||||++||+.+.||.++|+|..+.+.+. .++.--+...|++|||||+ ++++|+.|--|.||.+..++.+..-++
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGqG 372 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQG 372 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEeccc
Confidence 99999999999999999999999876555 3344556899999999999 899999999999999999999999999
Q ss_pred CCcCeEEEeec
Q 001363 484 HGAPVYSLCPH 494 (1092)
Q Consensus 484 ~~~~v~~i~~~ 494 (1092)
|..+|..++|.
T Consensus 373 HkSWVs~VaFD 383 (636)
T KOG2394|consen 373 HKSWVSVVAFD 383 (636)
T ss_pred cccceeeEeec
Confidence 99999999997
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.2e-10 Score=123.65 Aligned_cols=336 Identities=14% Similarity=0.155 Sum_probs=209.8
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-----eC-----
Q 001363 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GD----- 598 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----s~----- 598 (1092)
..++...+++++|++++.+. +..+.|++..++..+.+... ..+..+.|+|.++++.+- ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~ 103 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS 103 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence 34567889999999999886 44588999888864333332 358899999999988762 12
Q ss_pred CCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcc
Q 001363 599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1092)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1092)
.-.+.+|+++++.....+...... -.+..|++|..+.+-. ..+.+.+|+..+-+.. ...-+...+..+.++|.+..
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~ 179 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAARL-VSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEP 179 (566)
T ss_pred CCceeeeeeccceehhheehhhhc--Ccccccccchhhhhhh-hcceEEEEecCCccce-eeeeeccceeeEEecCCCCC
Confidence 234779999996655555443222 2578888877654332 3478999998873222 23345667777777765322
Q ss_pred ccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCee
Q 001363 679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 758 (1092)
Q Consensus 679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 758 (1092)
. .+++ ...-..+.-..+|+|........... ....- -...=..+.|++-|.-|+.....
T Consensus 180 ~-------~vAv--------yvPe~kGaPa~vri~~~~~~~~~~~~--a~ksF-Fkadkvqm~WN~~gt~LLvLast--- 238 (566)
T KOG2315|consen 180 P-------FVAV--------YVPEKKGAPASVRIYKYPEEGQHQPV--ANKSF-FKADKVQMKWNKLGTALLVLAST--- 238 (566)
T ss_pred c-------eEEE--------EccCCCCCCcEEEEeccccccccchh--hhccc-cccceeEEEeccCCceEEEEEEE---
Confidence 1 1111 00112344467888886522211110 00000 11122345677766655433221
Q ss_pred EEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC---CeEEEEEcCCcee
Q 001363 759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKT 835 (1092)
Q Consensus 759 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd---g~i~iwd~~~~~~ 835 (1092)
+++....+.- ...++.+.+.. |. -....+. ..++|.++.|+|+|+-++++.+ .++.|||+. +..
T Consensus 239 ---dVDktn~SYY----GEq~Lyll~t~-g~-s~~V~L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~ 305 (566)
T KOG2315|consen 239 ---DVDKTNASYY----GEQTLYLLATQ-GE-SVSVPLL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKP 305 (566)
T ss_pred ---eecCCCcccc----ccceEEEEEec-Cc-eEEEecC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCE
Confidence 0111100111 11223333334 22 1222232 5789999999999998888763 779999986 555
Q ss_pred eEEecCCCCCeEEEEEcCCCCCEEEEEeCC---CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeC------
Q 001363 836 ILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG------ 906 (1092)
Q Consensus 836 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~------ 906 (1092)
+..+ ..++=.++-|+| .|++|+.++-+ |.+.|||+.+.+++..+..-.. +-..|+|||.+++|++.
T Consensus 306 v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 306 VFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred eEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEe
Confidence 5544 456678899999 78888887765 7999999999999988885443 45899999999999875
Q ss_pred CCcEEEEEcCC
Q 001363 907 DAQIFVWDVDG 917 (1092)
Q Consensus 907 Dg~I~iwd~~~ 917 (1092)
|+.++||+..+
T Consensus 381 dNg~KiwhytG 391 (566)
T KOG2315|consen 381 DNGIKIWHYTG 391 (566)
T ss_pred cCCeEEEEecC
Confidence 67799999987
No 247
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=9.7e-12 Score=142.17 Aligned_cols=233 Identities=15% Similarity=0.101 Sum_probs=153.7
Q ss_pred cCCCcceeeecccCCCCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001363 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
.+......+.+..|...+.+.+|||||++++.+.. .+..|.+||+.+|+... +..+.+
T Consensus 187 ~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g 246 (435)
T PRK05137 187 MDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPG 246 (435)
T ss_pred ECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCC
Confidence 34445555677788889999999999996444432 24689999999887543 344566
Q ss_pred cEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-CC--CcEEEEE
Q 001363 398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD--KTIKVWD 471 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d--~~i~vwd 471 (1092)
.+.+.+|||||+.|+.. +.++ .|.+||+.+++.. .+..+.+......|+|||++ ++..+ .+ ..|.+||
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMN 320 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEE
Confidence 77889999999988754 4444 4778898887532 35556666778999999995 44443 33 3688889
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
+.+++. +.+..+...+....|+ +||+.|+..+.+ ..|.+||+...... .+.. ...+..+.|+|||+.|+..+
T Consensus 321 ~~g~~~-~~lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 321 ADGSNP-RRISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred CCCCCe-EEeecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEE
Confidence 776654 3444344555566674 467788776543 35778887554432 2222 23467789999999998776
Q ss_pred cCCCCc--eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 549 TSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 549 ~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
...... ..++++|+..+.. ..+.. . +.+...+|+|
T Consensus 396 ~~~~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp 432 (435)
T PRK05137 396 QTPGSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP 432 (435)
T ss_pred ccCCCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence 533221 4688889876654 33332 2 3355556665
No 248
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.44 E-value=1.2e-09 Score=112.91 Aligned_cols=172 Identities=15% Similarity=0.172 Sum_probs=133.1
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-cEEEEEcCCceeeEeeccccCCeEE
Q 001363 813 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 813 dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1092)
+|.+++..+.|...|.+...+-.++. ++.+.|.-..+.. +++-++.|..|| .+-|||..+++ +.++...-+.|.+
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence 78999999999988888766554433 4667788888888 777889999999 99999999876 4556667788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eC----CcEEEEEcCC
Q 001363 892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE----THLAIYEAEE 966 (1092)
Q Consensus 892 l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d----~~i~lwd~~~ 966 (1092)
+..+|||+.++.+-....|.+.|++++..+. +...+ . +-|+.++|+|+++++|-+ -+ ..|++||+.+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~---idkS~--~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKSE--Y---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeE---ecccc--c---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 9999999999999888899999999976322 22111 1 368999999999999986 23 4699999998
Q ss_pred ceeeeeeccCCCCCEEEEEEecCCCEEEEEEC
Q 001363 967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 998 (1092)
++...... ..+.-.+-+|.|||++|..-+.
T Consensus 479 ~Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 479 GKIYDVTT--PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CeEEEecC--CcccccCcccCCCCcEEEEEec
Confidence 88766432 2333455689999998876553
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.1e-09 Score=111.10 Aligned_cols=281 Identities=11% Similarity=0.098 Sum_probs=185.5
Q ss_pred ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC---CeeEEEeecCCCcCcCcccccccCCccc
Q 001363 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1092)
Q Consensus 707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~ 783 (1092)
+..|.+|+++......... .........+-++++|+++.|.++..+ |.+.-|.++.
T Consensus 15 s~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~------------------ 73 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP------------------ 73 (346)
T ss_pred CCceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC------------------
Confidence 4668888887433221111 112356677889999999999888665 6666666543
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC-ceeeEE--ecCCCCC----------eEE
Q 001363 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS 848 (1092)
Q Consensus 784 ~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 848 (1092)
.+|.-........ ...+...++++++|++|+++. .|.|.++-+.. |..... ...|.+. +..
T Consensus 74 --~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 74 --DDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --CCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 3333222221111 233347899999999999997 58999999965 433221 1223333 788
Q ss_pred EEEcCCCCCEEEEEeCC-CcEEEEEcCCceeeEeec---cccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC--Ccee
Q 001363 849 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ 921 (1092)
Q Consensus 849 l~~s~~d~~~lasg~~d-g~v~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iwd~~~--~~~~ 921 (1092)
..+.| ++++|++.+-. -.|.+|++..|+....-. .-...-+.|+|+|++++.....+ +++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 89999 89888876532 279999999876432211 23445688999999999876665 89999999987 4544
Q ss_pred eeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeC--CcEEEEEcCC--ceee-eeeccCCCCCEEEEEEecCCCEEEEE
Q 001363 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAEE--LTCL-KQWFPISSVPISQATFSCDCRMVFTS 996 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d--~~i~lwd~~~--~~~~-~~~~~~h~~~v~~l~fs~dg~~l~t~ 996 (1092)
..+.+.++.....-..+...+.+++||++|.++.. +.|.+|.+.. ++.. ......+........|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 44455444443333346788999999999999744 4688887753 3321 12233345557889999999999998
Q ss_pred ECC-CcEEEEEcC--CCceE
Q 001363 997 FVD-GTLSIHEAS--NLEVQ 1013 (1092)
Q Consensus 997 ~~D-g~i~vwd~~--~~~~~ 1013 (1092)
..+ ..|.+|..+ +|++-
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 865 458888665 45544
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=2.9e-11 Score=127.81 Aligned_cols=284 Identities=16% Similarity=0.185 Sum_probs=191.2
Q ss_pred ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC-cCeEEEeecccCCccEEEEEecCCeEEEEEcC
Q 001363 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517 (1092)
Q Consensus 439 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~ 517 (1092)
+|...-+.|..+|||++ ++++|...-.|++||+..-... |..|. ..+..+.+. +.|-..++.-..|.+|.+..-
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak- 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAK- 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhh-
Confidence 46677889999999997 7889999999999998765543 33332 223222221 122233444455555554311
Q ss_pred CCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe
Q 001363 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1092)
Q Consensus 518 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 597 (1092)
......... ......++++.-..-|++++.. ..|+-+++..|..+..+.... +.++++..++....|++|+
T Consensus 124 -~G~hy~~RI-P~~GRDm~y~~~scDly~~gsg----~evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 124 -YGRHYRTRI-PKFGRDMKYHKPSCDLYLVGSG----SEVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACGT 194 (703)
T ss_pred -cCeeeeeec-CcCCccccccCCCccEEEeecC----cceEEEEcccccccccccccc---ccceeeeecCccceEEecc
Confidence 111111111 1122345555444444444432 239999999999999988876 8999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEeCCCC---------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc-cccCce
Q 001363 598 DDHVIKIWDMNKVQLLTTIDAGGG---------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNL 667 (1092)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v 667 (1092)
.+|.|..||.++...+.++..... .+.|+++.|+.+|-.+++|+.+|.+.|||+...+++.... +..-+|
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI 274 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence 999999999999887777654322 3458999999999999999999999999999887665433 344556
Q ss_pred eeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCc
Q 001363 668 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ 747 (1092)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 747 (1092)
..+.|.+. -+++.+++ .....++|||-..+.+..... ....++.+++-|++-
T Consensus 275 ~~l~~~~~--------------------~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiE-------pt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 275 KKLDWQDT--------------------DQQNKVVS-MDKRILKIWDECTGKPMASIE-------PTSDLNDFCFVPGSG 326 (703)
T ss_pred eeeccccc--------------------CCCceEEe-cchHHhhhcccccCCceeecc-------ccCCcCceeeecCCc
Confidence 66666532 11233333 344789999977665543322 345588899999999
Q ss_pred EEEEeecCCeeEEEeec
Q 001363 748 AIFALASNGVHLMWRWP 764 (1092)
Q Consensus 748 ~l~~~~~dg~i~~w~~~ 764 (1092)
.++++-.++.+..|=++
T Consensus 327 m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIP 343 (703)
T ss_pred eEEEecCCCcceeEEcc
Confidence 89888888776666554
No 251
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.8e-10 Score=121.48 Aligned_cols=326 Identities=13% Similarity=0.173 Sum_probs=200.2
Q ss_pred eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-----------CCC
Q 001363 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DDH 600 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----------~dg 600 (1092)
-+-+.|||.|.||++-...| |.+|--.+-..++.|.. ..|.-+.|||+.++|++-+ +..
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 45689999999999987533 89998777666666653 4688999999999999854 225
Q ss_pred cEEEEECCCCceEEEEeCCCC-CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccc
Q 001363 601 VIKIWDMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1092)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1092)
.++|||+.+|.....+..... ...-.-..||.|++++|.... .+|.||+...-.++....
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks------------------ 343 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS------------------ 343 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc------------------
Confidence 799999999999988876322 223346789999999998877 478888766422111100
Q ss_pred cccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeE
Q 001363 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 759 (1092)
Q Consensus 680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 759 (1092)
+ ....|..+.|+|.+..|+.-...
T Consensus 344 ---------------------l-------------------------------ki~gIr~FswsP~~~llAYwtpe---- 367 (698)
T KOG2314|consen 344 ---------------------L-------------------------------KISGIRDFSWSPTSNLLAYWTPE---- 367 (698)
T ss_pred ---------------------c-------------------------------CCccccCcccCCCcceEEEEccc----
Confidence 0 22335555666665433222111
Q ss_pred EEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe
Q 001363 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 839 (1092)
Q Consensus 760 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~ 839 (1092)
+.. .. ..+.+..+.+++.+++.
T Consensus 368 ---------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt~ 389 (698)
T KOG2314|consen 368 ---------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRTK 389 (698)
T ss_pred ---------------------------ccC-----------Cc--------------------ceEEEEecCccceeeec
Confidence 110 00 11223333333333332
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEE----------eCCCcEEEEEcCCcee-eEeeccccCCeEEEEEcCCCCEEEEEeC--
Q 001363 840 MPPSPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGG-- 906 (1092)
Q Consensus 840 ~~~~~~i~~l~~s~~d~~~lasg----------~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~l~s~s~-- 906 (1092)
.-+.-.=..+-|-. .|.+|+.- +.=..+.|+.+..... +..+ .-...|...+|-|.|..+++.+.
T Consensus 390 nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~ 467 (698)
T KOG2314|consen 390 NLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNT 467 (698)
T ss_pred cceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccc
Confidence 22221112233433 44444431 1122466666665432 2222 25577889999999998887654
Q ss_pred -CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE----eCCcEEEEEcCCceeeeeeccCCCCCE
Q 001363 907 -DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVPI 981 (1092)
Q Consensus 907 -Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~----~d~~i~lwd~~~~~~~~~~~~~h~~~v 981 (1092)
..++.+|.+++.. .....+..++.. ....+.|||.|++++++ ..|.+..||..-..+...-...| ...
T Consensus 468 ~k~tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~a 540 (698)
T KOG2314|consen 468 VKNTVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAA 540 (698)
T ss_pred cccceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-ccc
Confidence 3578999988522 222344444432 36789999999999873 46789999988544443323334 345
Q ss_pred EEEEEecCCCEEEEEECC------CcEEEEEcCC
Q 001363 982 SQATFSCDCRMVFTSFVD------GTLSIHEASN 1009 (1092)
Q Consensus 982 ~~l~fs~dg~~l~t~~~D------g~i~vwd~~~ 1009 (1092)
+.+.|.|.|+|++|+++- ..-++|+...
T Consensus 541 t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 541 TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 678999999999999864 3455666553
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=3.2e-09 Score=113.02 Aligned_cols=205 Identities=11% Similarity=0.087 Sum_probs=131.5
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceee-E
Q 001363 806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S 880 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~-~ 880 (1092)
..++++|||+++.+.. +..+.+.|+.+++.+..+.-.. ...-...+. +..+ +.+.||......+.+ |+.. .
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEe
Confidence 3578889999888775 5789999999999988877533 222233332 2222 233455444443332 2211 1
Q ss_pred ---eeccccCCe-EEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc---C-CCCCceEEEEccCCCEE
Q 001363 881 ---KLEGHSKRV-TGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---T-LAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 881 ---~l~~h~~~V-~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~---~-~~~~v~~l~~s~dg~~l 951 (1092)
.+.+-..++ ..-.|++ ||+++..... |+|.+-|+...+......+....... . ..+...-+++++|++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 111100000 0014456 8888776666 99999998765544433333321110 0 01345569999999988
Q ss_pred EEEe---C--------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceEEeec
Q 001363 952 LLVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 952 a~~~---d--------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
.+.. . +.|.++|..+++.+..+..+ ..+..++|||||+ +|++.. .++.|.+.|+.+++.+.++.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8731 1 57999999999999987765 4889999999999 777665 57889999999999998874
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.38 E-value=1.2e-09 Score=116.22 Aligned_cols=269 Identities=14% Similarity=0.133 Sum_probs=170.6
Q ss_pred CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC----------CCEEEEEEcc
Q 001363 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH 426 (1092)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~----------d~~i~iwd~~ 426 (1092)
++|.+.|..+++.+..... |.. ...+ +||||+.|+++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~------------------G~~--P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG------------------GFL--PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEc------------------cCC--Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 8899999999888764221 111 1224 9999999988755 6789999999
Q ss_pred CCCcccceEEEcc--c---ccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccE
Q 001363 427 GGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501 (1092)
Q Consensus 427 ~~~~~~~~~~~~~--h---~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 501 (1092)
+.+.+..+. +.. + ...-..++++|||+++++.--+.+..|.+.|+.+++.+.++....... -.. .++..
T Consensus 86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~---t~e~~- 159 (352)
T TIGR02658 86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFP---TANDT- 159 (352)
T ss_pred cCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEE---ecCCc-
Confidence 987765332 111 1 112347899999995333333458999999999999999887422111 111 11111
Q ss_pred EEEEecCCeEEEEEcCCCCceE-----EecCCCCce-EEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCC-----eEEE
Q 001363 502 IFSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKR 569 (1092)
Q Consensus 502 l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~i-~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~ 569 (1092)
...-+.||......++...... .+.....++ ..-.|++ +|++++... ++.|++.|+... ....
T Consensus 160 ~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~ 234 (352)
T TIGR02658 160 FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIE 234 (352)
T ss_pred cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceee
Confidence 2233455555544443322211 111100010 0114456 888887765 367999995433 3333
Q ss_pred EEeecc----ccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC
Q 001363 570 TYQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1092)
Q Consensus 570 ~~~~~~----~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1092)
.+.... ...+...-++++++++++++.. ..+.|.++|..+++.+..+.... .+..++++||++
T Consensus 235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgk 311 (352)
T TIGR02658 235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAK 311 (352)
T ss_pred eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCC
Confidence 322111 1123344599999999998843 22579999999999999988643 478999999999
Q ss_pred -EEEEEe-CCCeEEEEECCCCceeeec
Q 001363 636 -LLAVIA-NENRIKILETPESNSVDAA 660 (1092)
Q Consensus 636 -~l~~~~-~dg~i~iw~~~~~~~~~~~ 660 (1092)
+|++.. .++.|.++|..+++.+..+
T Consensus 312 p~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 312 PLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 777666 5788999999999888776
No 254
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=4.8e-11 Score=118.29 Aligned_cols=155 Identities=12% Similarity=0.185 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCEEEEEeC----------CCcEEEEEcCC-ceeeEeecc-ccCCeEEEEEcCCCCEEEEE--eCCCcEEE
Q 001363 847 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV 912 (1092)
Q Consensus 847 ~~l~~s~~d~~~lasg~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~l~s~--s~Dg~I~i 912 (1092)
..+.|+| .|.+|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577888 6666655433 13455555532 233444432 45679999999999987655 35679999
Q ss_pred EEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe----CCcEEEEEcCCceeeeeeccCCCCCEEEEEEec
Q 001363 913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC 988 (1092)
Q Consensus 913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~ 988 (1092)
||++.. .+..... ..+..+.|||+|++|+++. .|.+.+||+.+.+.+.... | ..++.++|||
T Consensus 88 yd~~~~------~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKGK------KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SDATDVEWSP 153 (194)
T ss_pred EcCccc------EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c-CcEEEEEEcC
Confidence 999732 2222222 1467899999999999842 4679999999888887632 3 3578999999
Q ss_pred CCCEEEEEEC------CCcEEEEEcCCCceEEeec
Q 001363 989 DCRMVFTSFV------DGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 989 dg~~l~t~~~------Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
||++|++++. |+.++||+.. |+++.+..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999999875 7889999985 66665543
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.38 E-value=6e-11 Score=117.81 Aligned_cols=340 Identities=14% Similarity=0.183 Sum_probs=203.0
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
..++.++|+. +.++....-|..+-+++.+.|.+++||-- +.++.-..+.... ...+.++.+.++...|++|-.+|
T Consensus 15 ~ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 15 ELLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hhhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecc
Confidence 3455677777 77888778888889999999999999954 4455444443322 24578999999999999999999
Q ss_pred eEEEEECCCC----ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccC
Q 001363 645 RIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 720 (1092)
Q Consensus 645 ~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~ 720 (1092)
++.-+.+... ...+....|...+..+-++ .....+++.+.|..+ .|.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~----------------------~~~e~V~s~~~dk~~-~~h------ 141 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS----------------------LTHEWVLSTGKDKQF-AWH------ 141 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEec----------------------CCceeEEEeccccce-EEE------
Confidence 9998876533 2333344555555555443 122233333332211 010
Q ss_pred ccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCC
Q 001363 721 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 800 (1092)
Q Consensus 721 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~ 800 (1092)
.+ ..|. .+--|.+..
T Consensus 142 --------------------c~-e~~~---------~lg~Y~~~~----------------------------------- 156 (404)
T KOG1409|consen 142 --------------------CT-ESGN---------RLGGYNFET----------------------------------- 156 (404)
T ss_pred --------------------ee-ccCC---------cccceEeec-----------------------------------
Confidence 00 0000 000000000
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEE--EcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce
Q 001363 801 SQEAVPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
...++.+.-. +...|. .|.+.+- .......+.++.+|.+.+++++|.+ ...+|.+|..|..+.+||+...+
T Consensus 157 ---~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 157 ---PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred ---cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCc
Confidence 0000000000 122222 2333322 2334567888999999999999999 88999999999999999998654
Q ss_pred -eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec-----CC--------------------C
Q 001363 878 -VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT-----PD--------------------G 931 (1092)
Q Consensus 878 -~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-----~~--------------------~ 931 (1092)
....+.+|.+.|..+...+--+.|++++.||.|.+|+.+........-+.. .. .
T Consensus 231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h 310 (404)
T KOG1409|consen 231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQH 310 (404)
T ss_pred ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhh
Confidence 346778999999999998888999999999999999987643222111000 00 0
Q ss_pred Cc-CCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCc-------eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEE
Q 001363 932 VM-TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL-------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1003 (1092)
Q Consensus 932 ~~-~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~-------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~ 1003 (1092)
+. ..+..+-..+-+....+...+.+-.+++-|.-.. ..+...-.. ...|+.+.+..+-.+|+|+|.|+.|+
T Consensus 311 ~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlqetlglLvTsG~~Rvi~ 389 (404)
T KOG1409|consen 311 HCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQETLGLLVTSGTDRVIK 389 (404)
T ss_pred hhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhhhhccceeecCCceEEE
Confidence 00 0000111111122222222244444555443211 112221111 45789999988888999999999999
Q ss_pred EEEcCCC
Q 001363 1004 IHEASNL 1010 (1092)
Q Consensus 1004 vwd~~~~ 1010 (1092)
|||+..-
T Consensus 390 iwd~~~v 396 (404)
T KOG1409|consen 390 IWDVRSV 396 (404)
T ss_pred EEechhh
Confidence 9998753
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.7e-10 Score=130.17 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=146.8
Q ss_pred cceeeecccCCCCceEEeecCCCce--EEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHT--LLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~--llasg~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
....+.|..+...+..-+|||||+. ++.+...+ ..|.+.++.+|+... +....+..
T Consensus 174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~ 233 (428)
T PRK01029 174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQ 233 (428)
T ss_pred CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCc
Confidence 3344556555567788899999975 33344444 358888888886554 22234455
Q ss_pred EEEEECCCCCEEEEEeC-----CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE--EC
Q 001363 400 NRVVWSPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DA 472 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~-----d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw--d~ 472 (1092)
...+|||||+.||..+. +-.+.+|++.++..-.......++.+.....+|+|||+. ++++...+|...+| ++
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEEC
Confidence 67899999999997653 223455777653211111112223334567899999995 23333356655555 44
Q ss_pred CC-CceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 473 VT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 473 ~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
.. +.....+..+...+....|+ +||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+...
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wS--PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWS--PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred cccccceEEeccCCCCccceeEC--CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEE
Confidence 32 33345555555566667774 467777766543 368999998876654332 234567789999999988765
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1092)
.. .+...|+++|+.+++......+ . +.+...+|+|-.
T Consensus 390 ~~-~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 390 GN-SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP 426 (428)
T ss_pred CC-CCCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence 43 3467799999988876554432 2 345667777643
No 257
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=4.3e-10 Score=118.64 Aligned_cols=334 Identities=13% Similarity=0.183 Sum_probs=202.2
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----------C
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----------K 465 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----------~ 465 (1092)
-.-+.+.|||-|.||++--..| |.+|--.+-..++ .+ .|.+ |..+.|||..+ +|+|-+.. .
T Consensus 211 WTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---RF-~Hp~-Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 211 WTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---RF-YHPG-VQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred ceeeeEEecCCceEEEEEeccc-eeeecCccHHHHH---hc-cCCC-ceeeecCCccc--eEEEecCCccccCcccCCCc
Confidence 3456799999999999998887 9999765544333 23 4665 89999999999 78886632 4
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
.++|||+.+|...+.|.... +..-.| .-+.||.|++++|
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~-----------------------~~~~~W------------------P~frWS~DdKy~A 321 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIK-----------------------SPYLKW------------------PIFRWSHDDKYFA 321 (698)
T ss_pred eEEEEEccccchhcceeccC-----------------------CCcccc------------------ceEEeccCCceeE
Confidence 57788888887776664211 111112 1257889999998
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceEEEEeCCC
Q 001363 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-----DHVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-----dg~i~iwd~~~~~~~~~~~~~~ 620 (1092)
.... ..|.+++..+..++. .....-..|....|+|.++.|+.-+. -..+.+-.+.+++.+.+.....
T Consensus 322 rm~~-----~sisIyEtpsf~lld---~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn 393 (698)
T KOG2314|consen 322 RMTG-----NSISIYETPSFMLLD---KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN 393 (698)
T ss_pred Eecc-----ceEEEEecCceeeec---ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee
Confidence 7763 348888876644332 22222367888899999877766432 1245666667777666655432
Q ss_pred CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcc
Q 001363 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1092)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 700 (1092)
- .-..+-|-.+|.+|++--.-. ...+ ..+..
T Consensus 394 V--sDckLhWQk~gdyLcvkvdR~-------tK~~-------~~g~f--------------------------------- 424 (698)
T KOG2314|consen 394 V--SDCKLHWQKSGDYLCVKVDRH-------TKSK-------VKGQF--------------------------------- 424 (698)
T ss_pred e--eccEEEeccCCcEEEEEEEee-------cccc-------ccceE---------------------------------
Confidence 1 123456777788887543210 0000 00000
Q ss_pred ceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC---CeeEEEeecCCCcCcCcccccc
Q 001363 701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTK 777 (1092)
Q Consensus 701 l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~ 777 (1092)
..+.|+.+...+ +......-...|-.++|-|.|..+++.+.+ .++.+|.+....
T Consensus 425 -------~n~eIfrireKd------Ipve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~---------- 481 (698)
T KOG2314|consen 425 -------SNLEIFRIREKD------IPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI---------- 481 (698)
T ss_pred -------eeEEEEEeeccC------CCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC----------
Confidence 112222221100 000001134567889999999988877654 456666554311
Q ss_pred cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001363 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 853 (1092)
Q Consensus 778 ~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 853 (1092)
+...+...+ .......+.|+|.|++++.+. .|.+.++|+.-..+..+-.......+.+.|.|
T Consensus 482 ----------~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP 547 (698)
T KOG2314|consen 482 ----------KKPSLVKEL----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP 547 (698)
T ss_pred ----------Cchhhhhhh----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC
Confidence 010111111 234556789999999999885 47899999875344333333345678899999
Q ss_pred CCCCEEEEEeCCC------cEEEEEcC
Q 001363 854 HDNNVIAIGMDDS------TILIYNAR 874 (1092)
Q Consensus 854 ~d~~~lasg~~dg------~v~iwd~~ 874 (1092)
.|+|+++++... --+||++.
T Consensus 548 -tGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 548 -TGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred -CCCEEEEeeehhhhccccceEEEEee
Confidence 899999988644 34555554
No 258
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=6.9e-09 Score=114.45 Aligned_cols=249 Identities=15% Similarity=0.220 Sum_probs=160.7
Q ss_pred CCcEEEEEECCCCCEEEEEeC----CCEEEEEEccCC-CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 396 GVSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~----d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
......++++|++++|.+... ++.|..|++... ..+...............++++|++++ ++++...+|+|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 356677999999999999866 578999998875 333333333323345568999999994 34444568999999
Q ss_pred ECCC-CceeEE---Ee--c--------CCcCeEEEeecccCCccEEEEEe-cCCeEEEEEcCCCCc-e---EEe-cCCCC
Q 001363 471 DAVT-GSRTYS---FE--G--------HGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA-R---VDY-DAPGL 530 (1092)
Q Consensus 471 d~~~-~~~~~~---~~--~--------~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~-~---~~~-~~~~~ 530 (1092)
++.. |..... +. + ......++.+ +++++++++.. ....|.+|+++.... . ..+ ...+.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9987 443322 21 1 1223456666 45667776654 345799999987662 1 122 23455
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeE--EEEEeecc---ccCCceEEEEEcCCCCEEEEEe-CCCcE
Q 001363 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG-DDHVI 602 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s-~dg~i 602 (1092)
..+.++|+|+++++++... ..+.|.+++.. ++.. +..+.... ........+.++||+++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 7889999999999988764 35567777776 5533 22222211 1112578899999999998865 66789
Q ss_pred EEEECC--CCce--EEEEeCCCCCCCCceEEEccCCCEEEEEeC-CCeEEEEECC
Q 001363 603 KIWDMN--KVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETP 652 (1092)
Q Consensus 603 ~iwd~~--~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~ 652 (1092)
.+|++. ++.+ +..+...+ .....++++|+|++|+++.. ++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G--~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGG--KFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESS--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCC--CCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999983 3443 33333322 23589999999999998874 6789999764
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=4e-10 Score=127.14 Aligned_cols=243 Identities=12% Similarity=0.077 Sum_probs=151.1
Q ss_pred CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE---EEeCC--CEEEEEEccCCCcc
Q 001363 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDA 431 (1092)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la---s~~~d--~~i~iwd~~~~~~~ 431 (1092)
..|.+.|.+.+.... ++.....+..-+|||||+.++ +...+ ..|.+.++.+|+..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 367777877665442 444556677889999998633 33333 36888899887643
Q ss_pred cceEEEcccccceeEEEEecCCCcEEEEEEeC----CCcEEEEECCCC---ceeEEEecCCcCeEEEeecccCCccEEEE
Q 001363 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFS 504 (1092)
Q Consensus 432 ~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d~~i~vwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s 504 (1092)
+ +....+.....+|||||+++ +++... |-.+.+|++.++ +......++.......+| ++||+.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEE
Confidence 2 33344455678999999953 333322 333455777653 333333233233455667 557777766
Q ss_pred Ee-cCCeEEEEEc--CC-CCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCc
Q 001363 505 IS-VDGKIKAWLY--DS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580 (1092)
Q Consensus 505 ~~-~dg~i~vwd~--~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 580 (1092)
.+ .+|...+|.+ +. ......+......+....|+|||+.|+..+.. .+...|++||+.+++......+ . ..
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~ 372 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---EN 372 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CC
Confidence 55 5676566644 32 22233344444566788999999999887653 2356799999998876544332 2 35
Q ss_pred eEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 581 VSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 581 v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
+....|+|||+.|+..+. ...|+++|+.+++........ ..+...+|+|-.
T Consensus 373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 373 KESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGS---GEKRFPSWGAFP 426 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC---CcccCceecCCC
Confidence 667899999998876442 356888999887765544322 235667887743
No 260
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=6e-11 Score=117.66 Aligned_cols=265 Identities=12% Similarity=0.182 Sum_probs=176.0
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeec-ccccceeeEeeecCCCCcEEEEEECCCCC--E
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI-GACSMLFKTALVRDPGVSVNRVVWSPDGS--L 410 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~-~~~~~~~~~~~l~~h~~~V~~l~~spdg~--~ 410 (1092)
.+-|.+|.|..+|. +||+|..+|.|.++.-+.... . ++.++-. ......|....--.-...|..+.|.+++. .
T Consensus 25 adiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-G--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred hcceeeEEeecccc-eEeecCCCCeEEEeecccccc-c--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence 56899999999999 699999999999997543221 0 1111100 00111111111112346789999999764 5
Q ss_pred EEEEeCCCEEEEEEccCCCccc------------------c--------------eEE-EcccccceeEEEEecCCCcEE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCKQIS 457 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~------------------~--------------~~~-~~~h~~~v~~~~~s~d~~~l~ 457 (1092)
++..+.|.+|++|.+....... . ... -.+|+.-|+++.++.|+. .
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t 178 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--T 178 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--e
Confidence 5666789999999986432111 0 001 136888899999999998 5
Q ss_pred EEEEeCCCcEEEEECCCCcee---EEEec-----CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc------eE
Q 001363 458 VITCGDDKTIKVWDAVTGSRT---YSFEG-----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA------RV 523 (1092)
Q Consensus 458 l~s~~~d~~i~vwd~~~~~~~---~~~~~-----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------~~ 523 (1092)
++++. |=.|.+|+++--..- ..++. .+..|++..|+|... ..++-.+..|+|++.|++.... ..
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 66655 788999998743222 22222 335678888988744 6888889999999999984321 11
Q ss_pred EecC----------CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC-CCCeEEEEEeecccc---------CCce--
Q 001363 524 DYDA----------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIKRTYQGLQLQ---------HNSV-- 581 (1092)
Q Consensus 524 ~~~~----------~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~~---------~~~v-- 581 (1092)
.... --..|..+.|+++|+++++-. -.+|.+||+ ...+.+.+++.|..- .+.|
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~Ifd 331 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFD 331 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhh
Confidence 1111 112578899999999999853 457999999 456677777666421 1222
Q ss_pred -EEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001363 582 -SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 582 -~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
..++|+.++.++++|+....+++++...|.
T Consensus 332 KFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 332 KFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 347899999999999999999999965543
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2.4e-10 Score=131.22 Aligned_cols=229 Identities=13% Similarity=0.093 Sum_probs=144.4
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
...+.+..+.+.+...+|||||++++.+...+ ..|.+||+.+|+... +....+.+...
T Consensus 189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~ 248 (430)
T PRK00178 189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAP 248 (430)
T ss_pred CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCe
Confidence 34455666777899999999999655554333 368999999887543 22233445578
Q ss_pred EECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCce
Q 001363 403 VWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSR 477 (1092)
Q Consensus 403 ~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~ 477 (1092)
+|||||++|+.. +.++ .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|.++|+.+++.
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCE
Confidence 999999999854 3344 6888899887532 34455566777899999995 233333333 577888888774
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecC-C--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
.. +...........|+ +|++.++..+.+ + .|.+||+.++........ .......|+|||+.++..... .+.
T Consensus 324 ~~-lt~~~~~~~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g~ 397 (430)
T PRK00178 324 ER-VTFVGNYNARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QGR 397 (430)
T ss_pred EE-eecCCCCccceEEC--CCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CCc
Confidence 33 22112222334554 466777766543 3 477888887654332221 222356899999999887653 335
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
..+++++...+ ..+.+.... +.+...+|+|
T Consensus 398 ~~l~~~~~~g~-~~~~l~~~~---g~~~~p~ws~ 427 (430)
T PRK00178 398 GVLMLVSINGR-VRLPLPTAQ---GEVREPSWSP 427 (430)
T ss_pred eEEEEEECCCC-ceEECcCCC---CCcCCCccCC
Confidence 66888887543 333444332 4455566665
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=6.7e-09 Score=105.42 Aligned_cols=252 Identities=13% Similarity=0.178 Sum_probs=172.3
Q ss_pred CCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCC--ceee--EEecCCCCCeEEEEEcCCCCCEEEEEeC-CCcEEEE
Q 001363 801 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMD-DSTILIY 871 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg~v~iw 871 (1092)
....++-++++|+++.|.++. +|.|..|.+.. |+.. ........+-+.+++++ ++++|+++.. -|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566778899999999888875 36788887764 4432 22222233448899999 8988888875 4799999
Q ss_pred EcCC-ceee--EeeccccCC----------eEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001363 872 NARS-SEVI--SKLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1092)
Q Consensus 872 d~~~-~~~~--~~l~~h~~~----------V~~l~~spdg~~l~s~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1092)
.+.. |.+. .....|.+. +....|.|++++|++.+ .|+ |.+|+++.+............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9965 4322 122236555 88899999999999875 465 9999999877555444444333
Q ss_pred CCceEEEEccCCCEEEEE--eCCcEEEEEcCCc-eeeeee------ccC--CCCCEEEEEEecCCCEEEEEEC-CCcEEE
Q 001363 937 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL-TCLKQW------FPI--SSVPISQATFSCDCRMVFTSFV-DGTLSI 1004 (1092)
Q Consensus 937 ~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~-~~~~~~------~~~--h~~~v~~l~fs~dg~~l~t~~~-Dg~i~v 1004 (1092)
...+.++|+|++++..+. -+++|.+|..... ..+..+ ... -......+..++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 357899999999988774 5689999998763 222111 111 1556778999999999998753 347888
Q ss_pred EEcCCCce-EEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCC-cEEEEecCCCCCcc
Q 001363 1005 HEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTW 1067 (1092)
Q Consensus 1005 wd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-~v~~w~~~~~~~~~ 1067 (1092)
+.+....- +.... +.+ .....|..+.++| ++++|+++..++ .|.+|.+....++.
T Consensus 271 f~V~~~~g~L~~~~---~~~----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 271 FSVDPDGGKLELVG---ITP----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred EEEcCCCCEEEEEE---Eec----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 88765422 22221 111 2235577788998 467777776655 79999998776654
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.9e-10 Score=131.07 Aligned_cols=228 Identities=14% Similarity=0.106 Sum_probs=141.2
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCC--cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
..+.+..+...+.+.+|||||++++.+...++ .|.+||+.+++.... ....+.....+
T Consensus 209 ~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~ 268 (448)
T PRK04792 209 NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPR 268 (448)
T ss_pred CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCee
Confidence 34556666778999999999996555443333 588899988875431 11222344689
Q ss_pred ECCCCCEEEEE-eCCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCcee
Q 001363 404 WSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT 478 (1092)
Q Consensus 404 ~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~ 478 (1092)
|||||+.|+.. +.++ .|.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++..
T Consensus 269 wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 269 FSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred ECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEE
Confidence 99999988764 4555 4788888876532 34455556778899999995 333343344 4667788777654
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEec-CCe--EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
. +..........+| ++||++|+..+. ++. |.++|+.++.... +... .......|+|||+.++..... .+..
T Consensus 344 ~-Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~ 417 (448)
T PRK04792 344 R-LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQ 417 (448)
T ss_pred E-EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCce
Confidence 3 2222222334466 446667766554 444 4556766655433 2221 122345899999999887653 3456
Q ss_pred eEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001363 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
.+++++. +|.....+.... +.+...+|+|
T Consensus 418 ~l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp 446 (448)
T PRK04792 418 VLAAVSI-DGRFKARLPAGQ---GEVKSPAWSP 446 (448)
T ss_pred EEEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence 6888887 455555555443 4566667776
No 264
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.8e-10 Score=116.70 Aligned_cols=116 Identities=13% Similarity=0.176 Sum_probs=102.9
Q ss_pred CCeeEEEEecC--CCEEEEEe-CCeEEEEEcCCce-eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001363 803 EAVPCFALSKN--DAYLFSAS-GGVISLYIVMTFK-TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 803 ~~v~~~~~s~d--g~~l~~~s-dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
-.++++.|-+. ...+|++. -+.+++||...++ ++..+.--..+++++...| +++++++|..-|.+..||+.+++.
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCcee
Confidence 34567778777 77888887 5999999998764 5677777788999999999 999999999999999999999998
Q ss_pred eEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001363 879 ISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 879 ~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 919 (1092)
... +.+-.+.|+++..+|.+++||++|-|+.|||+|+++..
T Consensus 282 ~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 282 LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 877 88999999999999999999999999999999999844
No 265
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.31 E-value=2.1e-10 Score=113.82 Aligned_cols=162 Identities=19% Similarity=0.336 Sum_probs=114.2
Q ss_pred EEEEECCCCCEEEEEeC----------CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 400 NRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~----------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
..+.|+|+|++|++-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.++.|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 45889999999887533 1245666664332222221222 345799999999999766666777889999
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
||++ ++.+..+. ...++.+.|+| +|++|++++.+ |.|.+||.+..+.+.... ...+..++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9986 66676664 56788899955 67899988754 679999999666655443 335789999999999998
Q ss_pred EecC--CCCceeEEEEeCCCCeEEEE
Q 001363 547 CGTS--KEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 547 ~~~~--~~~~~~i~iwd~~~~~~~~~ 570 (1092)
+... ...++.+.||+.. |+.+..
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEe
Confidence 8753 1235668899874 555444
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1e-09 Score=125.92 Aligned_cols=237 Identities=14% Similarity=0.102 Sum_probs=150.1
Q ss_pred cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccce
Q 001363 358 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQ 434 (1092)
Q Consensus 358 ~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~ 434 (1092)
.|.++|.+.+.... +..+...+...+|||||++|+..+.+ ..|.+||+.+++...
T Consensus 180 ~l~~~d~~g~~~~~--------------------l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-- 237 (430)
T PRK00178 180 TLQRSDYDGARAVT--------------------LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-- 237 (430)
T ss_pred EEEEECCCCCCceE--------------------EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--
Confidence 47778877654332 44577789999999999999887643 469999999875322
Q ss_pred EEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe-cCC--
Q 001363 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDG-- 509 (1092)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg-- 509 (1092)
+....+.+...+|+|||+. ++++.+.++ .|.+||+.+++.. .+..+........|+ +|++.++..+ .+|
T Consensus 238 --l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~ 311 (430)
T PRK00178 238 --ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKP 311 (430)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCc
Confidence 3333445567899999995 333454454 6888899887654 454455555556674 4666665554 344
Q ss_pred eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001363 510 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 510 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
.|.++++.+++.... ...........|+|||+.++...... +...|+++|+.+++....... . ......|+|+
T Consensus 312 ~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~~~~lt~~-~----~~~~p~~spd 384 (430)
T PRK00178 312 QIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGSVRILTDT-S----LDESPSVAPN 384 (430)
T ss_pred eEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCCEEEccCC-C----CCCCceECCC
Confidence 466667766554322 22223334578999999998876432 345699999998865433222 1 1224589999
Q ss_pred CCEEEEEeCC---CcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 590 KDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 590 ~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
|+.++..+.+ ..+.+++... .....+..+. ..+...+|+|
T Consensus 385 g~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~ 427 (430)
T PRK00178 385 GTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP 427 (430)
T ss_pred CCEEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence 9999876643 3466777753 3333443322 2355666765
No 267
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=6.7e-10 Score=110.38 Aligned_cols=357 Identities=14% Similarity=0.212 Sum_probs=211.9
Q ss_pred ccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-----eeEEEecCC------------cCeEEEeecccCCccEEE
Q 001363 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFIF 503 (1092)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~i~~~~~~~~~~l~ 503 (1092)
...|.++.|...|. +|++|..+|.|.++.-+... ....++.|. ..|+.+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 44688999999999 89999999999999643222 223344443 357788888888888899
Q ss_pred EEecCCeEEEEEcCCCCceEE-----ecCCCCceEEEEE---ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 504 SISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 504 s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~i~~~~~---s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
..+.|.+|++|.+........ .......++++.. .+....+. ..+.+.+..
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aN-- 161 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYAN-- 161 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccc--
Confidence 999999999998876544331 1111112222211 11111111 111222221
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eEEEEeCCCC-----CCCCceEEEcc-CCCEEEEEeCCCeEEE
Q 001363 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGG-----LPENPRICFNK-NGTLLAVIANENRIKI 648 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~-----~~~v~~v~~s~-~~~~l~~~~~dg~i~i 648 (1092)
.|...|.++.++.|...++++. |=.|.+|+++--. .......... ...|++..|+| ..++++-.+..|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 1247799999999998888764 6779999987432 2222221111 12367888999 4567788888899999
Q ss_pred EECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccccc
Q 001363 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1092)
Q Consensus 649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~ 728 (1092)
-|++....-.. .-+++..
T Consensus 241 cDmR~~aLCd~-------------------------------------------------hsKlfEe------------- 258 (433)
T KOG1354|consen 241 CDMRQSALCDA-------------------------------------------------HSKLFEE------------- 258 (433)
T ss_pred eechhhhhhcc-------------------------------------------------hhhhhcc-------------
Confidence 99874321110 0011110
Q ss_pred CCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001363 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808 (1092)
Q Consensus 729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~ 808 (1092)
|. .|..+. ... +--..|..+
T Consensus 259 pe------------dp~~rs------------------------------------------ffs------eiIsSISDv 278 (433)
T KOG1354|consen 259 PE------------DPSSRS------------------------------------------FFS------EIISSISDV 278 (433)
T ss_pred cc------------CCcchh------------------------------------------hHH------HHhhhhhce
Confidence 00 000000 000 123456778
Q ss_pred EEecCCCEEEEEeCCeEEEEEc-CCceeeEEecCCC------------CCe---EEEEEcCCCCCEEEEEeCCCcEEEEE
Q 001363 809 ALSKNDAYLFSASGGVISLYIV-MTFKTILTIMPPS------------PTA---TSLAFNPHDNNVIAIGMDDSTILIYN 872 (1092)
Q Consensus 809 ~~s~dg~~l~~~sdg~i~iwd~-~~~~~~~~~~~~~------------~~i---~~l~~s~~d~~~lasg~~dg~v~iwd 872 (1092)
.|+++|+|+++-+--+|++||+ ...+++.+++-|. ..| ..++|+- ++.+++||+....+++|+
T Consensus 279 KFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 279 KFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence 8999999998887788999998 4555666555443 122 4678988 788999999999999999
Q ss_pred cCCceee-EeeccccCC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC
Q 001363 873 ARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 873 ~~~~~~~-~~l~~h~~~--V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
+..|... .++...... ...+ ..-+.+.+++......+|-.. .+- ...+...+|+|..+
T Consensus 358 ~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~------------ldf----~kkilh~aWhp~en 418 (433)
T KOG1354|consen 358 LARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA------------LDF----RKKILHTAWHPKEN 418 (433)
T ss_pred CCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch------------hhh----hhHHHhhccCCccc
Confidence 7766432 333322221 1111 112334444443332222110 000 01467789999999
Q ss_pred EEEEEeCCcEEEEE
Q 001363 950 RFLLVHETHLAIYE 963 (1092)
Q Consensus 950 ~la~~~d~~i~lwd 963 (1092)
.+|++.-+.+++|.
T Consensus 419 ~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 419 SIAVAATNNLYIFQ 432 (433)
T ss_pred eeeeeecCceEEec
Confidence 99998777787763
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=3.3e-10 Score=130.12 Aligned_cols=215 Identities=19% Similarity=0.164 Sum_probs=140.5
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~ 401 (1092)
....+.+..+...+...+|||||++++.+...+ ..|.+||+.+++... +..+...+.+
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~ 238 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGA 238 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccc
Confidence 334456666777899999999999654443322 479999999886543 2235556778
Q ss_pred EEECCCCCEEEEE-eCC--CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-CCC--cEEEEECCCC
Q 001363 402 VVWSPDGSLLGVA-YSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTG 475 (1092)
Q Consensus 402 l~~spdg~~las~-~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~--~i~vwd~~~~ 475 (1092)
++|+|||+.|+.. +.+ ..|.+||+.++... .+..+........|+|||++ |+..+ .++ .|.++|+.++
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCC
Confidence 9999999988754 333 35888999876432 24445555667899999994 44433 333 5888888777
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
+. ..+..+...+....|+ +++.+++.++.++ .|.+||+.+..... +... .......|+|||++|+.....+
T Consensus 313 ~~-~~l~~~~~~~~~~~~s--pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~- 386 (417)
T TIGR02800 313 EV-RRLTFRGGYNASPSWS--PDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG- 386 (417)
T ss_pred CE-EEeecCCCCccCeEEC--CCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC-
Confidence 64 3444455556666774 4677888887775 78888887744332 2222 2334568999999998877643
Q ss_pred CceeEEEEeCCCCeEEEEE
Q 001363 553 GESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~ 571 (1092)
+...+++.+.. +.....+
T Consensus 387 ~~~~l~~~~~~-g~~~~~~ 404 (417)
T TIGR02800 387 GRGVLGLVSTD-GRFRARL 404 (417)
T ss_pred CcEEEEEEECC-CceeeEC
Confidence 34556666643 4443444
No 269
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=6.9e-10 Score=127.49 Aligned_cols=210 Identities=15% Similarity=0.075 Sum_probs=138.4
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--c
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 466 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~ 466 (1092)
+..+...+...+|||||++||.+..+ ..|++||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44567789999999999999988643 47999999987532 23345566778999999985 334444444 5
Q ss_pred EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEec-CC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001363 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
|++||+.++... .+..+........|+ +|++.|+..+. ++ .|.++|+.+.+. ..+...........|+|+|++
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 889998887643 344444444455664 46777766554 33 477777765543 333334455677899999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEEEe
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~ 617 (1092)
++.+.... +...|++||+.++.... +... .......|+|++++|+..+.++ .+++.+. ++.....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEE-ccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence 99887533 34579999998865432 2221 1234457999999998876544 3455554 344444443
No 270
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=7.7e-10 Score=126.03 Aligned_cols=223 Identities=15% Similarity=0.109 Sum_probs=140.9
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc--
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~-- 466 (1092)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44567789999999999999987543 368999998875322 2222334457899999995 3344556664
Q ss_pred EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe-cCCe--EEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001363 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
|.+||+.+++. ..+..+.......+|++ |++.|+..+ .+|. |.++|+.+++... +..........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCE
Confidence 77889887764 34444555556677754 666665554 3444 5555666554332 2222233345789999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceEEEEeCCC
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DH--VIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~ 620 (1092)
++..+.. .+...|.++|+.+++... +.... ......|+|+++.++..+. ++ .+++++. +|.....+..+.
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence 9887653 234568889998887543 22211 1123479999999877553 33 3677776 455555555432
Q ss_pred CCCCCceEEEcc
Q 001363 621 GLPENPRICFNK 632 (1092)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1092)
..+...+|+|
T Consensus 437 --g~~~~p~Wsp 446 (448)
T PRK04792 437 --GEVKSPAWSP 446 (448)
T ss_pred --CCcCCCccCC
Confidence 2356677776
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=7.7e-11 Score=117.09 Aligned_cols=358 Identities=14% Similarity=0.138 Sum_probs=227.7
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
..++.++||.+.|+.....+..+ -+++.+.|.++|+|--+...+.. .......+++++.+.++.+.|+++-.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---- 88 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---- 88 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----
Confidence 34567789999998887766554 59999999999999654433322 23334557899999999999998875
Q ss_pred ceeEEEEeC----CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 554 ESFLVEWNE----SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 554 ~~~i~iwd~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
++.+.-+.. +.....+.+..|. ..+..+-|+....++++.+.|..+.---.+.+..+........ ..++.
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~ 162 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQ 162 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCc
Confidence 445666544 3444556666666 8899999999889999999988776444455554433222111 11122
Q ss_pred EccCCCEEEEEeCCCeEEEEECC--CCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 630 FNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
+.-. +..+|...|.+.+..+. .-..+..+.+|...+.++++. +....+.++..|
T Consensus 163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d 218 (404)
T KOG1409|consen 163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASD 218 (404)
T ss_pred eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEecccc
Confidence 2211 55666667777766554 346788899999999999997 557788999999
Q ss_pred cccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccc-----cCCcc
Q 001363 708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK-----VPPRL 782 (1092)
Q Consensus 708 ~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~-----~~~~~ 782 (1092)
..+.+||+........ ...+|...|..+...+--+.+++++.||.|.+|+++.......+..... ..+..
T Consensus 219 ~~vi~wdigg~~g~~~-----el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpff 293 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAY-----ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFF 293 (404)
T ss_pred CceEEEeccCCcceee-----eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHH
Confidence 9999999875444333 2345888899999888899999999999999999987654333332221 22333
Q ss_pred ccCCCCCceeeecCCCC--CC-CCCeeEEEEecCCCEEEEEeCCeEEEEEcC-------CceeeEEecCCCCCeEEEEEc
Q 001363 783 YQPRHGPQFMVNDTTDS--NS-QEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFN 852 (1092)
Q Consensus 783 ~~~~~g~~~~~~~l~~~--~~-~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s 852 (1092)
|+...--.....-+... .+ ...+...+-+.-..+...+.+-.+|+-|.- +...+..+......|+++.+.
T Consensus 294 wn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlq 373 (404)
T KOG1409|consen 294 WNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQ 373 (404)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhh
Confidence 33221100000000000 01 112222222222222222323334444421 112233343344679999998
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCC
Q 001363 853 PHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 853 ~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
. .-.+|+|++.|..|+|||+..
T Consensus 374 e-tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 374 E-TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred h-hccceeecCCceEEEEEechh
Confidence 8 677999999999999999874
No 272
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.27 E-value=2.6e-11 Score=115.97 Aligned_cols=170 Identities=21% Similarity=0.264 Sum_probs=126.3
Q ss_pred chhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---------HHHHHHHhcCcCHHHHHHHhccCC--CcCCccccch
Q 001363 3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFT--KVDDNRYSTK 71 (1092)
Q Consensus 3 ~~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~ 71 (1092)
..++|+-|||+.||-..||.++|+.+.+|+||..+ -..+|.+|..|+-++|++.+.++- .++.+. .
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---E 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---h
Confidence 46789999999999999999999999999999761 477899999999999999999873 234332 3
Q ss_pred hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccc-cccCCChHHHHHHHHHHHh
Q 001363 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLS-KYYGDALSARKNMMLELKQ 150 (1092)
Q Consensus 72 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~r~~l~~~l~~ 150 (1092)
+.|-+.+|+++|++..+...+|++++|++|.|+...++..++.|...|....++....-. .| --....|.++..++..
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s~R~kvA~~vN~ 179 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQSLRQKVASEVNS 179 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999988877788777766654433111100 00 0123456666667666
Q ss_pred hcccCcccccccCCCCCccHHHHHHHHHHHHHHH
Q 001363 151 IIEANPILQGKLKFPSIKRQRLRRLINQSLNWQH 184 (1092)
Q Consensus 151 ~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~ 184 (1092)
.|-...- .. -..+|..|++.-+..|.
T Consensus 180 aiL~~~~---~~-----~~~~l~~llk~~~~~~~ 205 (228)
T KOG2659|consen 180 AILASQE---HE-----SEPKLPFLLKLISWAQE 205 (228)
T ss_pred HHHHHhc---cc-----ccchHHHHHHHHHHHHH
Confidence 5543211 11 24578888866666553
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=2e-09 Score=115.57 Aligned_cols=194 Identities=12% Similarity=0.179 Sum_probs=155.3
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEe------c------------CCCcEEEEEEeCCCc
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT 466 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~------------d~~~l~l~s~~~d~~ 466 (1092)
.|.+.|+|....||.++||+...++....+.....-++..++..|. | .+.+..++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3567899999999999999999987554333222233444455542 1 123347888999999
Q ss_pred EEEEECCCCceeEEEe--cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001363 467 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1092)
|.+|+...|+....+. .|.+.|+++.++. +-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999988885 6899999988743 44689999999999999999988888888888899999999999999
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-----CCEEEEE-eCCCcEEEEECCC
Q 001363 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILAA-GDDHVIKIWDMNK 609 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-s~dg~i~iwd~~~ 609 (1092)
++++. .|.+||+++++.+..|.||. ++|.++.|..+ |.+++++ ..+..+.+|-+..
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98853 59999999999999999999 99999999877 6777764 4556677886554
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=3.4e-09 Score=113.82 Aligned_cols=188 Identities=15% Similarity=0.231 Sum_probs=148.0
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCceeeEEecCC---CCCeEEEEE------cC-------------CCCCEEEEEeCCCcE
Q 001363 812 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPP---SPTATSLAF------NP-------------HDNNVIAIGMDDSTI 868 (1092)
Q Consensus 812 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~------s~-------------~d~~~lasg~~dg~v 868 (1092)
|.+.++|... ||.+++|+...++....+.+. .+..++..| +| .|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456777775 799999999999887777542 223333333 11 155688889999999
Q ss_pred EEEEcCCceeeEeec--cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEcc
Q 001363 869 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 946 (1092)
Q Consensus 869 ~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 946 (1092)
.+|+...|+....+. .|.+.|.++.++.+-..|-|++.|+.+..|+..... .+........ .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence 999999999888886 499999999999999999999999999999999844 3333333333 588999999
Q ss_pred CCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecC-----CCEEEEE-ECCCcEEEEEcCC
Q 001363 947 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVFTS-FVDGTLSIHEASN 1009 (1092)
Q Consensus 947 dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~d-----g~~l~t~-~~Dg~i~vwd~~~ 1009 (1092)
||..++++ .++|++||+++++.+.. +.||.++|.++.|-.+ |.+++++ ..+..+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988874 46899999999999987 7899999999999887 6776654 3556688887765
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.17 E-value=3.3e-08 Score=111.54 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=112.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 536 (1092)
.++.++.++.|..+|..+|+.+............... ++..++.++.+|.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5778888999999999999998776544332222222 446788889999999999998888776554332111111
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001363 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
+ .+..++.+.. ++.++.||..+|+.+-.+.... ... ...... +..++.+..++.+..+|..+|+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 2 2345555543 5679999999999877665432 111 111111 2467888889999999999998
Q ss_pred eEEEEeCCCCC--CCC---ceEEEcc--CCCEEEEEeCCCeEEEEECCCC
Q 001363 612 LLTTIDAGGGL--PEN---PRICFNK--NGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 612 ~~~~~~~~~~~--~~v---~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.+......... ..+ ..+.-+| .+..+++++.+|.+..||..++
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 77654322110 000 0000011 2445666666666666666544
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=1.1e-07 Score=107.39 Aligned_cols=210 Identities=9% Similarity=0.060 Sum_probs=125.7
Q ss_pred eCCeEEEEEcCCceeeEEecCCCCCe-----EEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC----C---
Q 001363 821 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----R--- 888 (1092)
Q Consensus 821 sdg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~----~--- 888 (1092)
.++.+..||.++|+.+..+....... .+..+. + ..++.+..+|.+..+|..+|+.+........ .
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 35677777777777666554322211 111222 3 3677788899999999999987755431100 0
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcC
Q 001363 889 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAE 965 (1092)
Q Consensus 889 V~~l~~sp--dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~ 965 (1092)
+..+.-+| .+..+..++.+|.+..||..+++..-... ... ....+ .++..+.+ ..++.+..+|..
T Consensus 230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~~-------~~~p~--~~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD---ASS-------YQGPA--VDDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec---cCC-------ccCce--EeCCEEEEECCCCeEEEEECC
Confidence 00010011 35577778889999999999886432111 111 11122 23444544 678999999999
Q ss_pred CceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCE
Q 001363 966 ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1045 (1092)
Q Consensus 966 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~ 1045 (1092)
+|+.+............+... .+..|++++.+|.|+++|..+|+.+.++.... ..+... -++. ++.
T Consensus 298 tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~--------~~~~~s-p~~~---~~~ 363 (377)
T TIGR03300 298 SGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG--------SGIASP-PVVV---GDG 363 (377)
T ss_pred CCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CccccC-CEEE---CCE
Confidence 998775431111112222222 46688899999999999999999998776222 111110 1122 356
Q ss_pred EEEEeCCCcEEEEe
Q 001363 1046 FAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1046 l~~~~~dg~v~~w~ 1059 (1092)
|++++.||.|+.|.
T Consensus 364 l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 364 LLVQTRDGDLYAFR 377 (377)
T ss_pred EEEEeCCceEEEeC
Confidence 88999999998763
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.06 E-value=1.3e-08 Score=99.36 Aligned_cols=251 Identities=15% Similarity=0.112 Sum_probs=161.2
Q ss_pred CceEEeec---CCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC---cEEEEEECCCCC
Q 001363 336 SPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGS 409 (1092)
Q Consensus 336 ~V~~v~~s---pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~ 409 (1092)
.+..+.|. .+|...++-+..+|.|.++.....+..... + + +..-.- .-.++.|++.|.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L--~---------~-----ls~~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL--R---------G-----LSSKKISVVEALSLDISTSGT 134 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee--c---------c-----cchhhhhheeeeEEEeeccCc
Confidence 56666664 244445666677788888876543322210 0 0 111111 234678999999
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC-CCceeEE-EecCCcC
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAP 487 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~~~~~-~~~~~~~ 487 (1092)
.++++..+|.+.+-+..... +....++++|....+-+.|+..... ++.+||.|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 99999999988855544332 3333468899999999999877665 89999999999999998 4455543 5678888
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC--CEEEEEecCCCCceeEEEEeCCC-
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESE- 564 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~~~~~~~~i~iwd~~~- 564 (1092)
|.++.-++. .+.++++|+.|-.|++||.++......-....+.|..+..+|.- +.|++|--++ ..+.+.+.
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence 998876654 66899999999999999999766655555566889999999853 3444443322 33444332
Q ss_pred -CeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEE-EEECCCC
Q 001363 565 -GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV 610 (1092)
Q Consensus 565 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~-iwd~~~~ 610 (1092)
.+....+..+..|..-.+.-.|......+++++ .|+.++ +|-..++
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 221122333332225555555544445577755 556544 6654443
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=1.6e-07 Score=117.10 Aligned_cols=260 Identities=12% Similarity=0.090 Sum_probs=162.1
Q ss_pred EEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCE
Q 001363 738 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 816 (1092)
Q Consensus 738 ~~l~~s~~-g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~ 816 (1092)
..++++++ +..+++-..++.|.+|+.........+.... .....|. +. ...-.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~------~G~~dG~------~~-~a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE------EGLRDGS------FE-DATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC------cCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence 45788764 5566666667888888754321100000000 0000010 00 012234578999999887
Q ss_pred EEEEe--CCeEEEEEcCCceeeEEecCC-----------------CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce
Q 001363 817 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 817 l~~~s--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
|.++. .+.|+++|..++. +.++.+. -.....++|+|+++.++++.+.++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77665 4779999987754 3333210 11336799999566677777788999999998775
Q ss_pred eeEeecc---------c------cCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeee--------eeecC---C
Q 001363 878 VISKLEG---------H------SKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCR--------SLQTP---D 930 (1092)
Q Consensus 878 ~~~~l~~---------h------~~~V~~l~~spdg~-~l~s~s~Dg~I~iwd~~~~~~~~~~--------~~~~~---~ 930 (1092)
.. .+.+ + -.....++++||++ ++++-+.++.|++||+.++...... .+... .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 42 1111 1 12356799999998 4555667789999999876532100 00000 0
Q ss_pred CC--cCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccC------------CCCCEEEEEEecCCCEEEE
Q 001363 931 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT 995 (1092)
Q Consensus 931 ~~--~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t 995 (1092)
+. .........++++++|.++++ ..+++|++||..++......-.+ .-.....+++++||+.+++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000113468999999997777 67889999999877655322111 1235778999999999998
Q ss_pred EECCCcEEEEEcCCCce
Q 001363 996 SFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 996 ~~~Dg~i~vwd~~~~~~ 1012 (1092)
-+.+++|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999999876
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=6.8e-08 Score=108.25 Aligned_cols=205 Identities=14% Similarity=0.029 Sum_probs=129.3
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcC---CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.+.+.... .+....|||||+++++..+. +..|.++|+.+|+... +....+.+...+
T Consensus 181 ~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~ 239 (419)
T PRK04043 181 QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSD 239 (419)
T ss_pred eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeE
Confidence 34343333 77889999999864453333 3569999999887654 223445667788
Q ss_pred ECCCCCEEEEEeC---CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCcee
Q 001363 404 WSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT 478 (1092)
Q Consensus 404 ~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~ 478 (1092)
|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++++ ...+ .|.+.|+.+|+..
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCCCeE
Confidence 9999998876532 35688888887752 2 2333443344568999999744443 2233 6888898888764
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecC---------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
+.... ... ...| ++||+.|+..+.. ..|.+.|++++.... +... .......|+|||+.++....
T Consensus 315 rlt~~-g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 315 QVVFH-GKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred eCccC-CCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEc
Confidence 43321 111 1255 5577777666543 257777877765433 3222 23335889999999988765
Q ss_pred CCCCceeEEEEeCCCC
Q 001363 550 SKEGESFLVEWNESEG 565 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~ 565 (1092)
. .+...+.+.++...
T Consensus 388 ~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 388 L-GNQSALGIIRLNYN 402 (419)
T ss_pred c-CCcEEEEEEecCCC
Confidence 4 33556778887544
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=2.1e-09 Score=112.90 Aligned_cols=244 Identities=14% Similarity=0.220 Sum_probs=170.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC-Cccc---ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~---~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
+.||+..|..++--.+.+-+++++.|++|++|.+... ..+. ...++..|+.+|.++.|..|-+ .++++ ||.|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCcc
Confidence 7899999999988888889999999999999998742 2222 4557789999999999999988 57665 8899
Q ss_pred EEEECCCCceeEEEec--CCcCeEEEeecccCCccEEEEE-ecCCeEEEEEcCCCCceEEec-----CCCCceEEEEEcc
Q 001363 468 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYD-----APGLGCTRMAYSA 539 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~-----~~~~~i~~~~~s~ 539 (1092)
.+||.--|+.+..+.. ..+.+..+...++-+..+++.| +...+|+++|.+..+-...+. ++..-+.+++..+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9999988887754421 1122222332234355566665 788999999998877555443 3445688999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEE-EECCCCceEEEEeC
Q 001363 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLTTIDA 618 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i-wd~~~~~~~~~~~~ 618 (1092)
.|+.++++-. +++|.+.|.++|+.+....... -....++ .|..+.++....|.++.+ |..-+|....+...
T Consensus 887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 887 KGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred CcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 9999998865 6779999999999887665443 2222222 244566777778888888 98877766555442
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 619 GGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
+.. ..--...-|.-++++.....+.+|.-
T Consensus 959 ppe----pahflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 959 PPE----PAHFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCc----chhhhhccCceeEEeccCcEEEEEec
Confidence 211 00011123556777777677777753
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.97 E-value=3.2e-07 Score=114.41 Aligned_cols=255 Identities=11% Similarity=0.093 Sum_probs=159.0
Q ss_pred eEEEEecCCC-EEEEEe-CCeEEEEEcCCceeeEEecC--C------------CCCeEEEEEcCCCCCEEEEEe-CCCcE
Q 001363 806 PCFALSKNDA-YLFSAS-GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI 868 (1092)
Q Consensus 806 ~~~~~s~dg~-~l~~~s-dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~d~~~lasg~-~dg~v 868 (1092)
..+++++++. ++++-. .+.|+++|.. +..+..+.+ . -.....+++++ ++..|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 4678887644 444433 5889999986 444444332 1 12357899998 666555554 45789
Q ss_pred EEEEcCCceeeEeeccc-----------------cCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeee---ee
Q 001363 869 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ 927 (1092)
Q Consensus 869 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~---~~ 927 (1092)
+++|..++.. .++.+- -.....++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999887653 333210 12346799999 56677777888999999998765322100 00
Q ss_pred cCCCCc---CCCCCceEEEEccCCCEEEE--EeCCcEEEEEcCCceeeeee------------ccC--------CCCCEE
Q 001363 928 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQW------------FPI--------SSVPIS 982 (1092)
Q Consensus 928 ~~~~~~---~~~~~v~~l~~s~dg~~la~--~~d~~i~lwd~~~~~~~~~~------------~~~--------h~~~v~ 982 (1092)
...+.. ........++|+|+|+.|.+ ..++.|++||+.++...... +.. .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000100 00124678999999986655 46689999999876532110 000 011346
Q ss_pred EEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccc-cCCCC--ccccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001363 983 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 983 ~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1059 (1092)
+++|++||..+++-+.+++|++||..++........... ...+. ...--.|..++++| +++.+++-+.++.|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 889999999888888899999999998876543321100 00000 00011456788988 578888888999999999
Q ss_pred cCCCC
Q 001363 1060 PNEPG 1064 (1092)
Q Consensus 1060 ~~~~~ 1064 (1092)
+....
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 96543
No 282
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.96 E-value=1.3e-07 Score=92.76 Aligned_cols=198 Identities=15% Similarity=0.121 Sum_probs=135.1
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcC-CceeeE
Q 001363 805 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS 880 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~ 880 (1092)
..++.|++.+..+++.. +|.+.+-+...... ++..++|.-++..+.|+..+.+++.+|+.|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45778888888877775 58888666554443 347889999999999998788899999999999999998 344444
Q ss_pred e-eccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC--CEEEEEeC
Q 001363 881 K-LEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHE 956 (1092)
Q Consensus 881 ~-l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg--~~la~~~d 956 (1092)
. .+-|...|.++.-|| ++.+++||+.|..|++||...-. +++. .....+.|..+..+|.- ++|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~----kPl~----~~~v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG----KPLF----KAKVGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc----Cccc----cCccccceEEEEecchhhhHHHHHHHh
Confidence 4 456899999998886 57899999999999999998521 1111 11112579999999864 34444444
Q ss_pred CcEEEEEcCCcee----eeeeccCCCCCEEEEEEecCCCEEEEEE-CCCcEE-EEEcCCC
Q 001363 957 THLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLS-IHEASNL 1010 (1092)
Q Consensus 957 ~~i~lwd~~~~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~Dg~i~-vwd~~~~ 1010 (1092)
+..+|-+...+.. .......|.+-...-.|..-..+|+||+ .|+.++ +|-..++
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 4455555543321 2222344555555555543345788866 577655 7765554
No 283
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=3.1e-08 Score=109.67 Aligned_cols=506 Identities=12% Similarity=0.108 Sum_probs=261.0
Q ss_pred ceEEeecCCCceEEEEEcC----CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001363 337 PMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
-+-..|+|... ++|+++. .|+|.||- ++|++-+..+++ -.+++++|+|..-.||
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--------------------~hatSLCWHpe~~vLa 75 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--------------------VHATSLCWHPEEFVLA 75 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccccc--------------------eehhhhccChHHHHHh
Confidence 34567889887 7787764 47888885 667655432221 2355699999999999
Q ss_pred EEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE--EecC--CcCe
Q 001363 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAPV 488 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~--~~~~--~~~v 488 (1092)
+|..-|.+.+|...+.+.-. ....|+.+|.-+.||++|. .++|+..-|.|.+|....-..++. +-.| ...+
T Consensus 76 ~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l 150 (1416)
T KOG3617|consen 76 QGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL 150 (1416)
T ss_pred hccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence 99999999999988754222 3446999999999999999 899999999999998763222221 1122 2334
Q ss_pred EEEeecccCCcc------EEEEEecCCeEE-EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001363 489 YSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 489 ~~i~~~~~~~~~------~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
+-++|.-+.++. ..+..+.+..+- .+++......... .-.-.|+|..++.++. +|+|+-.|
T Consensus 151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~--------~ksgv~~g~~F~~~~~----~GtVyyvd 218 (1416)
T KOG3617|consen 151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD--------EKSGVPKGTEFLFAGK----SGTVYYVD 218 (1416)
T ss_pred eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc--------cccCCCCCcEEEEEcC----CceEEEEc
Confidence 445554333321 122233333222 3333211110000 0112367777777765 55677766
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CC---------------ce-------------
Q 001363 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KV---------------QL------------- 612 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~-~~---------------~~------------- 612 (1092)
- .|.......... . ..+-|.+...-+++.-.+-.+.++-.. +| ..
T Consensus 219 q-~g~~~~V~k~dS----~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvL 292 (1416)
T KOG3617|consen 219 Q-NGRQRTVHKLDS----E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVL 292 (1416)
T ss_pred C-CCcEEEEEEccc----h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccc
Confidence 3 343333332211 1 111222222222222222222222110 00 00
Q ss_pred --EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCce----------eeecccccCceeeeeecCCCcccc
Q 001363 613 --LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS----------VDAAGVLSDNLRKLSVNPISTVTG 680 (1092)
Q Consensus 613 --~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1092)
...+... ....+.+++++..+..++.|...|.+.+|.-..... +...+...+.|..+.|+|..+.++
T Consensus 293 r~~eKyg~e-~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~a 371 (1416)
T KOG3617|consen 293 RKSEKYGLE-LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAA 371 (1416)
T ss_pred cCCcchhhh-cCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhh
Confidence 0000011 123588999999999999999999999996543311 122223344555666665444443
Q ss_pred ccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001363 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 760 (1092)
Q Consensus 681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~ 760 (1092)
+.+....+.+.... .+ ..|.....++.-+.++-.|..+.
T Consensus 372 vn~~~~v~ll~E~~-----l~-----------------------------~~h~~~~~A~q~ss~S~~L~hc~------- 410 (1416)
T KOG3617|consen 372 VNTEEDVVLLGENS-----LT-----------------------------VKHRGKMAAIQTSSNSFTLLHCT------- 410 (1416)
T ss_pred hhhhhheeeeccCc-----hH-----------------------------HHHhhhhHHhhhcCCceEEEeec-------
Confidence 33222211110000 00 00111111111111111111110
Q ss_pred EeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEE--
Q 001363 761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT-- 838 (1092)
Q Consensus 761 w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~-- 838 (1092)
+|... . + ...-++..++.+. ..++...+.+|..|++.+......
T Consensus 411 --------------------------sGv~~-~--l---~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG~la~~~ 456 (1416)
T KOG3617|consen 411 --------------------------SGVSQ-D--L---KLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSGSLATIQ 456 (1416)
T ss_pred --------------------------cchhh-h--h---hhccchhhheecc--ceEEEEcCceEEEEEecccchhHHHh
Confidence 11000 0 0 0122333444433 456666678889999864321111
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee--ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001363 839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~ 916 (1092)
........+++++.. .++...++.+ |.++.+. |.+.+.+ ..-.+.|.-+.+ .|.+++.....+.++-+|+.
T Consensus 457 ~~tF~cet~~la~~n--qN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi--~g~~l~v~t~~~~~k~~dvs 529 (1416)
T KOG3617|consen 457 CTTFSCETTSLAIVN--QNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDI--MGELLIVQTVSTVAKRLDVS 529 (1416)
T ss_pred hhhhccccchHhHhh--cceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhh--ccceeEEeehHHHHHHhhhh
Confidence 111223344555553 4455555544 5555544 3333222 223444544555 37889988888888888888
Q ss_pred CCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE---EeC----CcEEEEEcCCceee
Q 001363 917 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL 970 (1092)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~---~~d----~~i~lwd~~~~~~~ 970 (1092)
..+...........+.....+.+..+..+..|..+.+ ..+ .++..||.++++..
T Consensus 530 r~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~ 590 (1416)
T KOG3617|consen 530 RAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ 590 (1416)
T ss_pred hhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence 7665544444444444444456778888777766544 222 47999999877643
No 284
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.94 E-value=0.0003 Score=81.24 Aligned_cols=619 Identities=11% Similarity=0.068 Sum_probs=300.5
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-C---
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-D--- 407 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-d--- 407 (1092)
|..+-..|+.+-++| ++.+||.-|.=.+-.+.+......+. ..++. + ..-++|..++.-. |
T Consensus 304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~----------~ilet--~-~NLgPI~Dm~Vvd~d~q~ 368 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV----------VILET--F-VNLGPIVDMCVVDLDRQG 368 (1096)
T ss_pred CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh----------hhhhh--c-ccccceeeEEEEeccccC
Confidence 445456677777888 57888887766666665433221100 00000 0 1224677666543 2
Q ss_pred CCEEEEEe---CCCEEEEEEccCCCcccceEEEcccccceeEEE--EecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 408 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 408 g~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+..+++++ .||++++..-.-+-.......+.| -..++.+. +.+.-...++++-. + .-++..+...-......
T Consensus 369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~-eTrvl~i~~e~ee~~~~ 445 (1096)
T KOG1897|consen 369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-S-ETRVLNISEEVEETEDP 445 (1096)
T ss_pred CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec-c-ceEEEEEccceEEeccc
Confidence 34566553 578899887654422222224555 33466666 44332221333322 2 23344432221111122
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+.......+..+.- +++.|+-.. ...||+++-. .....+..+. .++....+.+...++.++. ...+...++
T Consensus 446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i 516 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEI 516 (1096)
T ss_pred cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEe
Confidence 22223333332221 112222221 1235555433 2222333333 3333344444445555543 333555565
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCC------CEEEEEeCCCcEEEE-ECCCCceEEEEeCCC--CCCCCceEEEccC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGG--GLPENPRICFNKN 633 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~s~dg~i~iw-d~~~~~~~~~~~~~~--~~~~v~~v~~s~~ 633 (1092)
..+.+....+. .-...|.|+.++|-+ ++++.|..+..+.+. -..+...+....... -...|...+|-.|
T Consensus 517 ~~~~l~e~~~~--~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 517 EDGGLREVSHK--EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred eccceeeeeeh--eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 55542222221 124679999998752 266777765554443 333444433332221 1122444555567
Q ss_pred CCEEEEEeCCCeEEEEECC--CCceeeecc--cccCceeeeee----------cCCCccccccccCCceeecCCC-----
Q 001363 634 GTLLAVIANENRIKILETP--ESNSVDAAG--VLSDNLRKLSV----------NPISTVTGAGIANGSVSVNEDP----- 694 (1092)
Q Consensus 634 ~~~l~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~----------~~~~~~~~~~~~~~~~~~~~~~----- 694 (1092)
..+|.++..||.+..+.+. ++..-...+ -...++.--.| ..+.+.+. =..++...|.+-.
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~vi-Y~~n~kLv~spls~kev~ 673 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVI-YSSNGKLVYSPLSLKEVN 673 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEE-EecCCcEEEeccchHHhh
Confidence 8899999999998876554 332111110 01111111111 11111111 1111111111000
Q ss_pred ------CCC-CccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCC
Q 001363 695 ------KED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1092)
Q Consensus 695 ------s~d-~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~ 767 (1092)
++. +..++++. .+.+++..++.-.....+.+ | -......+++.+....+.+.+.......=
T Consensus 674 ~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtv--p---l~~~prrI~~q~~sl~~~v~s~r~e~~~~------ 741 (1096)
T KOG1897|consen 674 HMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTV--P---LGESPRRICYQESSLTFGVLSNRIESSAE------ 741 (1096)
T ss_pred hhcccccccCCceEEEec-CCceEEEEecchhhcceeee--c---CCCChhheEecccceEEEEEecccccchh------
Confidence 111 12222222 24455554442222222221 1 12334455666544333333322111100
Q ss_pred cCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC-CCEEEEEe-----------CCeEEEEEcCCcee
Q 001363 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKT 835 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d-g~~l~~~s-----------dg~i~iwd~~~~~~ 835 (1092)
..+.......++++|..+-..+...++...+....+.++.|..| +.++++|. .|.|.++....++.
T Consensus 742 --~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 742 --YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred --hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 00111122345666666655455444433233344555568877 77888773 26788998877444
Q ss_pred eEEecCC--CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001363 836 ILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913 (1092)
Q Consensus 836 ~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iw 913 (1092)
++....+ .+.+.++..- +|++|| +-...|++|+..+.+.+..-..|..++..+...-.|..++.|.--+.+.+-
T Consensus 820 L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred eeeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 4444322 2344444332 577776 345689999999987777777899999999999999999999988888777
Q ss_pred EcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCc-------------------eeeeeec
Q 001363 914 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL-------------------TCLKQWF 974 (1092)
Q Consensus 914 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~-------------------~~~~~~~ 974 (1092)
.....+.......+...+ .+++++.+-.+..++.+-.+|.+++-..++. +.+..+
T Consensus 896 ~y~~~eg~f~evArD~~p-----~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f- 969 (1096)
T KOG1897|consen 896 QYKGDEGNFEEVARDYNP-----NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKF- 969 (1096)
T ss_pred EEeccCCceEEeehhhCc-----cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeee-
Confidence 666544222112222211 3788999999988888877777666644321 111111
Q ss_pred cCCCCCEEE--EEEecCCCEEEEEECCCcEEEE
Q 001363 975 PISSVPISQ--ATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 975 ~~h~~~v~~--l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
.|..-|.. -..+|-+..+..|+.+|+|-+-
T Consensus 970 -~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 970 -RHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred -eecceEeeccccccCCCCcEEEEEccceEEEE
Confidence 13333333 1223444457778889988764
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.94 E-value=4.9e-09 Score=125.20 Aligned_cols=202 Identities=15% Similarity=0.253 Sum_probs=161.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|-..|.++.=+|...+.++|+.||.|++|.+..+..+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3346678889999999999999999999999999998877655443 33 8899999999999 688888899999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEe---cCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEE
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
+. .+.....+.|........|.. ..+++++ .++.+.+||...... -.....|.+.++++++.|..+.+++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 65 666777788988888887754 3456553 467899998654332 22337788899999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
+. +|.|++||++..++++.++. +. ...++++|+..|.++||++.....+.++...
T Consensus 2355 gr----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred CC----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 87 55599999998877666543 33 4578999999999999999988887777543
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.94 E-value=4e-07 Score=89.95 Aligned_cols=208 Identities=18% Similarity=0.139 Sum_probs=139.3
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCc--eeeEE---ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee
Q 001363 808 FALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 808 ~~~s~dg~~l~~~sdg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
++.++||++||+.-|..|.|-..++. ..+.+ .+.....=+.++||| |+.+||.+...|+|++||+....+ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 67889999999999998888776542 12222 222334558899999 999999999999999999986443 333
Q ss_pred cc-------ccCCeEEEEEcCCC------CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC
Q 001363 883 EG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 883 ~~-------h~~~V~~l~~spdg------~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
.. -...|..|.|.+-. ..|.....+|.++=|-+..+..+.......+.-.......|.++.+.|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 22 23567777776432 246666788888877764332111111111111111123799999999999
Q ss_pred EEEEEe-----C-------CcEEEEEcCCceeeee--------------------ec--------cCCCCCEEEEEEecC
Q 001363 950 RFLLVH-----E-------THLAIYEAEELTCLKQ--------------------WF--------PISSVPISQATFSCD 989 (1092)
Q Consensus 950 ~la~~~-----d-------~~i~lwd~~~~~~~~~--------------------~~--------~~h~~~v~~l~fs~d 989 (1092)
+|+++. + --+.-|.+-++.+-.. +. ......|..|..|||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 988841 1 1366676543321100 00 113678899999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCceEEeec
Q 001363 990 CRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 990 g~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
|+.||+...+|.|.+|++.+.++...+.
T Consensus 241 g~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 9999999999999999999999988776
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=6e-09 Score=109.56 Aligned_cols=295 Identities=9% Similarity=0.105 Sum_probs=186.5
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC-CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
-.+..+.||+..|..++--.+.+ -+++++.|++|++|.+... ..+.+ ..|..+ +..|+.+|..+.
T Consensus 726 irL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~t--------saCQfT-----Y~aHkk~i~~ig 791 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGT--------SACQFT-----YQAHKKPIHDIG 791 (1034)
T ss_pred eeeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCcccc--------ceeeeE-----hhhccCccccee
Confidence 34567789999999998777766 4789999999999998752 22221 122222 567999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC-CCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
|-.|-++++++ ||-|++||.--|+.+.+...-..| +.+..+..-++ .+.++++.|+...+|+++|.+.++....++
T Consensus 792 fL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 792 FLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK 868 (1034)
T ss_pred eeeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence 99999999876 677999999887766543222222 22333333333 344355556889999999999988776664
Q ss_pred c-----CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 483 G-----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 483 ~-----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
. ...-+.+++..+ .|..++.+-.+|.|.+.|.+++..+..+.........++ .|..+.++.... +..+
T Consensus 869 Vcna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHsl 941 (1034)
T KOG4190|consen 869 VCNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSL 941 (1034)
T ss_pred eccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----ccee
Confidence 3 345577887754 557899999999999999998877665554443333332 244455554433 4456
Q ss_pred EE-EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceEEEEeCCCCCCCCceEEEcc
Q 001363 558 VE-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 558 ~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
.+ |....|.......... .+.. ....-|..++++.....+.+|--.. ...+..+....-....++++.-|
T Consensus 942 aVnWhaldgimh~q~kppp---epah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LP 1016 (1034)
T KOG4190|consen 942 AVNWHALDGIMHLQDKPPP---EPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLP 1016 (1034)
T ss_pred EeeehhcCCeeeeccCCCC---cchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecc
Confidence 66 8766665544433222 1111 1112355677777666777774221 12222332222223356677777
Q ss_pred CCCEEEEEeCCCeEEE
Q 001363 633 NGTLLAVIANENRIKI 648 (1092)
Q Consensus 633 ~~~~l~~~~~dg~i~i 648 (1092)
-..-+..|...|.|.+
T Consensus 1017 LN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1017 LNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ccchhhccCCCCceee
Confidence 6666677777787765
No 288
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.89 E-value=8.5e-09 Score=123.24 Aligned_cols=224 Identities=13% Similarity=0.182 Sum_probs=166.3
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCc
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGA 486 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~ 486 (1092)
++.......++...-|..+.+.. .++.+-..|.++.=+|... +.+||+.||.|++|....++.+..++. ...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred cccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 34444444455555565554321 2334556788888888877 799999999999999999998887743 336
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 565 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~- 565 (1092)
.|+.+.|+. .|..+..+..||.+.+|... .+.......|......+.|-. ..+++++.+.+ ++.+.+||..-.
T Consensus 2253 ~vtr~~f~~--qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFNH--QGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhhhhcc--cCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence 788888854 66788899999999999877 455556667777777777765 66777766555 677999996532
Q ss_pred --eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001363 566 --AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 566 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
.++. ..|. +.++++++.|..+.+++|+.+|.|++||++..++.++++. +. ...++++++..
T Consensus 2327 ~~s~v~--~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2327 MNSLVH--TCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSE 2389 (2439)
T ss_pred ccceee--eecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcc
Confidence 2222 4555 8999999999999999999999999999998887766643 33 46789999999
Q ss_pred CeEEEEECCCCceeeecc
Q 001363 644 NRIKILETPESNSVDAAG 661 (1092)
Q Consensus 644 g~i~iw~~~~~~~~~~~~ 661 (1092)
|.++||++..-..+..+.
T Consensus 2390 g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cceEEEEccccchhhcCc
Confidence 999999999776655544
No 289
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.88 E-value=3e-06 Score=95.88 Aligned_cols=220 Identities=10% Similarity=0.058 Sum_probs=127.5
Q ss_pred CCEEEEEeCCeEEEEEcCCceeeEEecCCCCC-----eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC-
Q 001363 814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK- 887 (1092)
Q Consensus 814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~- 887 (1092)
+..++...++.+..+|..+|+.+......... ..+.+.. ++ .++.++.+|.+..+|..+|+.+........
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence 33333334677777788777777665432111 0111222 23 566678899999999999987665431100
Q ss_pred ------CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcE
Q 001363 888 ------RVTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL 959 (1092)
Q Consensus 888 ------~V~~l~~sp--dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i 959 (1092)
....+.-+| .+..+..++.+|.+..+|..+++..-... .+. ...+.. .++...+...++.+
T Consensus 238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~~~------~~~~~~-~~~~vy~~~~~g~l 306 (394)
T PRK11138 238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----YGS------VNDFAV-DGGRIYLVDQNDRV 306 (394)
T ss_pred CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----CCC------ccCcEE-ECCEEEEEcCCCeE
Confidence 011111122 24566677789999999999886432111 111 111221 23444445778999
Q ss_pred EEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEEC
Q 001363 960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1039 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1039 (1092)
..+|..+|+.+-...........+... .+.+|+.++.||.+...|..+|+.+.+..... ..+.+.-+ ..
T Consensus 307 ~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--------~~~~s~P~-~~ 375 (394)
T PRK11138 307 YALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--------SGFLSEPV-VA 375 (394)
T ss_pred EEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CcceeCCE-EE
Confidence 999999987754321111111222222 24567788999999999999999988775311 11111001 11
Q ss_pred CCCCCEEEEEeCCCcEEEEecC
Q 001363 1040 PLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1040 p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
+..|++++.||.|+.++++
T Consensus 376 ---~~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 376 ---DDKLLIQARDGTVYAITRP 394 (394)
T ss_pred ---CCEEEEEeCCceEEEEeCC
Confidence 3589999999999998763
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.87 E-value=3.9e-06 Score=86.07 Aligned_cols=232 Identities=15% Similarity=0.133 Sum_probs=153.9
Q ss_pred eEEEEec-CCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCe--EEEEEcCCCCCEEEEEeC-----CCcEEEEEcC-
Q 001363 806 PCFALSK-NDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMD-----DSTILIYNAR- 874 (1092)
Q Consensus 806 ~~~~~s~-dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~-----dg~v~iwd~~- 874 (1092)
-.++.+| ++..++.+. .....+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 3678888 555666665 3458899999999988877655432 3578999 8999988644 4799999999
Q ss_pred CceeeEeeccccCCeEEEEEcCCCCEEEEEeC------------------CCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001363 875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGG------------------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936 (1092)
Q Consensus 875 ~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~------------------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 936 (1092)
+.+.+..+..|.-.-..+.+.|||+.|+.+-. +-.+..-|..+|+......+......
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~---- 162 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ---- 162 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc----
Confidence 66888889888777788999999988887521 22355556666664442222111111
Q ss_pred CCceEEEEccCCCEEEEE-eCC-------cEEEEEcCCceeeeeecc------CCCCCEEEEEEecCCCEEEEEE-CCCc
Q 001363 937 PSETHIQFHKDQTRFLLV-HET-------HLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDGT 1001 (1092)
Q Consensus 937 ~~v~~l~~s~dg~~la~~-~d~-------~i~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~-~Dg~ 1001 (1092)
.++..+++.++|..++.. ..+ -|.+++-. +.+..+.. .-...+-+|+++++|.++++++ .-++
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 269999999999987763 111 14444433 22221111 1267899999999998876554 6789
Q ss_pred EEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001363 1002 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1002 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1059 (1092)
+.+||..+|+++....... .+.++..+ +. |+..+..|.+....
T Consensus 241 ~~~~d~~tg~~~~~~~l~D------------~cGva~~~--~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPLPD------------ACGVAPTD--DG-FLVSSGQGQLIRLS 283 (305)
T ss_pred EEEEECCCCCEeeccccCc------------eeeeeecC--Cc-eEEeCCCccEEEcc
Confidence 9999999999986655211 23455554 23 56665666644333
No 291
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.86 E-value=0.00057 Score=79.02 Aligned_cols=581 Identities=11% Similarity=0.108 Sum_probs=290.3
Q ss_pred EECCCCCEEEEEeCCCEEEEEEcc-CCCcccc---eEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 403 VWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~-~~~~~~~---~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
...++|...+.+..+|.+...-+. +++.... ....-+...-..|+.+.++| .+..|+.-|.=++-.+.+..-.
T Consensus 264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~ 340 (1096)
T KOG1897|consen 264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV 340 (1096)
T ss_pred cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence 355678888888888887666555 4443322 11233555667788888887 4788887665555554432221
Q ss_pred -------EEEecCCcCeEEEeecccC--CccEEEEEe---cCCeEEEEEcCCCCceE---EecCCCCceEEEE-------
Q 001363 479 -------YSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGARV---DYDAPGLGCTRMA------- 536 (1092)
Q Consensus 479 -------~~~~~~~~~v~~i~~~~~~--~~~~l~s~~---~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~------- 536 (1092)
.++. .-+||..++..... .+..+++++ .||.+|+..-.-+-... .+.+ -..+..+.
T Consensus 341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~ 418 (1096)
T KOG1897|consen 341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENY 418 (1096)
T ss_pred Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccC
Confidence 2232 34578777765433 334455554 57888887432111111 1111 01112221
Q ss_pred ----------------------------EccCCCEEEEEecCCCC-----ceeEEEEeCCCCeEEEEEeeccccCCceEE
Q 001363 537 ----------------------------YSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVSV 583 (1092)
Q Consensus 537 ----------------------------~s~dg~~l~~~~~~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 583 (1092)
|+.+.+.+++....++. ...|++++-. ........ .+.++.
T Consensus 419 d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~----p~~~ti 492 (1096)
T KOG1897|consen 419 DNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRP----PGKITI 492 (1096)
T ss_pred CcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccC----CCceEE
Confidence 11122222222211110 0112333221 01111111 123344
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC--C----CEEEEEeCCCeEEEEE-CCCCce
Q 001363 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILE-TPESNS 656 (1092)
Q Consensus 584 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iw~-~~~~~~ 656 (1092)
...+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + +++++|..+..+.+.- .++...
T Consensus 493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 493 GVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred EEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 4444455677777777777777777665 332222223346888888873 2 3788887766555443 333322
Q ss_pred eeecccccCce-eeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc--CccccccccCCccc
Q 001363 657 VDAAGVLSDNL-RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR--PSECQSLLLPSKVK 733 (1092)
Q Consensus 657 ~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~--~~~~~~~~~~~~~~ 733 (1092)
+.........+ .++-+. .+ ..|..++.++..||.+.-|-++... ........ -.
T Consensus 572 ~~~~~l~~~~iPRSIl~~---------------~~----e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~----lG 628 (1096)
T KOG1897|consen 572 ITHEQLSGEIIPRSILLT---------------TF----EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVT----LG 628 (1096)
T ss_pred eeeeccCCCccchheeeE---------------Ee----eccceEEEEEcCCceEEEEEEEcccceEccccccc----cC
Confidence 22211111110 001110 11 2357888889999987766554322 11111111 13
Q ss_pred cccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-
Q 001363 734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK- 812 (1092)
Q Consensus 734 ~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~- 812 (1092)
..++.--.|+..++.-+.+.+|.-..+|..... .+.....++...| + ..|+.
T Consensus 629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k----------------------Lv~spls~kev~~---~--c~f~s~ 681 (1096)
T KOG1897|consen 629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK----------------------LVYSPLSLKEVNH---M--CPFNSD 681 (1096)
T ss_pred CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc----------------------EEEeccchHHhhh---h--cccccc
Confidence 344555566666555555555544444432111 0011111111001 1 11222
Q ss_pred -CCCEEEEEeCCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCC--------------CcEEEEEcCC
Q 001363 813 -NDAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD--------------STILIYNARS 875 (1092)
Q Consensus 813 -dg~~l~~~sdg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------------g~v~iwd~~~ 875 (1092)
-...++++..+.+++.-+..-+. +++.. -......+++.+ ....+++.+.- ..++++|-++
T Consensus 682 a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT 759 (1096)
T KOG1897|consen 682 AYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT 759 (1096)
T ss_pred cCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCc
Confidence 23467777777777776654332 23322 223455666665 34444443321 1466777666
Q ss_pred ceeeEeecc-cc---CCeEEEEEcCC-CCEEEEEeC----------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001363 876 SEVISKLEG-HS---KRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 876 ~~~~~~l~~-h~---~~V~~l~~spd-g~~l~s~s~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
-+.+...+- .. -.|.++.|..| +.+++.|.. .|.|.|+.+..+... +.+....-. +.+
T Consensus 760 f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L--~~v~e~~v~----Gav- 832 (1096)
T KOG1897|consen 760 FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL--ELVAETVVK----GAV- 832 (1096)
T ss_pred eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce--eeeeeeeec----cce-
Confidence 554433221 11 23445568877 677777642 466778877762211 111111000 112
Q ss_pred EEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001363 941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 941 ~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
.+.---+..++++-+..|++|++.+.+.++. ...|..++..+...-.|..+++|..-+++.+-.....+-........
T Consensus 833 -~aL~~fngkllA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD 910 (1096)
T KOG1897|consen 833 -YALVEFNGKLLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD 910 (1096)
T ss_pred -eehhhhCCeEEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh
Confidence 2222333445556677899999998876665 55688899999999999999999887877766555444211111122
Q ss_pred ccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001363 1021 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1021 ~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
+.|. +..++.+- |.+.++-+..+|.+.+-.......
T Consensus 911 ~~p~-------Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~~ 946 (1096)
T KOG1897|consen 911 YNPN-------WMTAVEIL--DDDTYLGAENSGNLFTVRKDSDAT 946 (1096)
T ss_pred hCcc-------ceeeEEEe--cCceEEeecccccEEEEEecCCCC
Confidence 2222 22333333 356788888889888877764443
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=2e-08 Score=109.61 Aligned_cols=211 Identities=17% Similarity=0.277 Sum_probs=146.7
Q ss_pred EeeecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 389 TALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 389 ~~~l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
..++.||+..|+.+.|.|. -..||+++.|..+..||+.+.. ..+..+..-...-..++|+.... .+...+..+.|
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--~p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i 182 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--RPFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDI 182 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC--cceeeeecccccCceeeecccCc--chhhhccCCce
Confidence 3458899999999999995 5688999999999999998764 22223334444567789987666 35556667789
Q ss_pred EEEECCCC-ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCceEEEEEccCCCEEE
Q 001363 468 KVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 468 ~vwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~ 545 (1092)
++||...| .++..+++|...|+.+.|..... ..+.+.+.||+|++||.+........ .....++..-++.|-|.-.+
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 99999876 56788999999999998864433 36889999999999999865544322 22334666666777555433
Q ss_pred EEecCCCCceeEEE---------EeCCC-CeEEEEEeeccccCCceEEEEEcCC----------CCEEEEEeCCCcEEEE
Q 001363 546 SCGTSKEGESFLVE---------WNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIW 605 (1092)
Q Consensus 546 ~~~~~~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~s~dg~i~iw 605 (1092)
.--.. |.+.+.+ |+..+ .+.+..|.||. +.|....|-.. .-+|++-+.|.++++|
T Consensus 262 ~mp~~--G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 262 IMPMV--GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred ecccc--CCeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 32221 1223333 33332 35688899988 66655444322 2368999999999999
Q ss_pred ECCC
Q 001363 606 DMNK 609 (1092)
Q Consensus 606 d~~~ 609 (1092)
-+.+
T Consensus 337 pI~~ 340 (1081)
T KOG0309|consen 337 PIDS 340 (1081)
T ss_pred eccH
Confidence 8754
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=3.6e-08 Score=101.14 Aligned_cols=165 Identities=21% Similarity=0.172 Sum_probs=115.1
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~- 414 (1092)
.++.+..+|.++ ++|++..+....++++...... .+.++. ... ...-+++.|-.+.....++
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~---------~~v---~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDV---------SCV---PKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeE---------eec---ccCcceeeeeeccceEEEEe
Confidence 556667788887 7888888777777776554331 111110 001 1223344454555555544
Q ss_pred --eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcCeEEE
Q 001363 415 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1092)
Q Consensus 415 --~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i 491 (1092)
+....+.+|....+.+. .+-||-..+..++|+||++ +++++..|..|+|-....-..+..| -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44556667776654433 3558999999999999999 8999999999999887766666555 5799999999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 526 (1092)
+.. ++..|++++.|+++++||+.+++....+.
T Consensus 201 sl~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLT---DNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eec---cCceeeecCCCCcEEEEecccCCcccccc
Confidence 974 33579999999999999999988775443
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=1.4e-06 Score=97.71 Aligned_cols=212 Identities=9% Similarity=0.005 Sum_probs=131.1
Q ss_pred eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-EEEEEeCC---CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCC
Q 001363 824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 899 (1092)
.|.+-|..... .+.+... +......|+| |++ .++..+.+ ..|+++|+.+++...... ..+......|||||+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 45555554333 3333333 3678899999 776 36654443 479999998887544333 455566788999998
Q ss_pred EEEEE-eCC--CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCC----cEEEEEcCCceeeee
Q 001363 900 ILVSS-GGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ 972 (1092)
Q Consensus 900 ~l~s~-s~D--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~----~i~lwd~~~~~~~~~ 972 (1092)
.|+.. +.+ ..|.++|+.+++.. .+....+ ......|+|||+.|+...+. .|+++|+.+++..+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 77643 333 46888888776522 2322222 12345799999998875432 689999988877554
Q ss_pred eccCCCCCEEEEEEecCCCEEEEEECC---------CcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCC
Q 001363 973 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1043 (1092)
Q Consensus 973 ~~~~h~~~v~~l~fs~dg~~l~t~~~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1043 (1092)
...+. ....|||||++|+..+.. ..|.+.|+.++... .+... . . ....+|+| |+
T Consensus 317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~---~~~p~~SP-DG 379 (419)
T PRK04043 317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V---NQFPRFSS-DG 379 (419)
T ss_pred ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C---cCCeEECC-CC
Confidence 33222 124899999999877654 26788898888653 22211 0 0 11357999 57
Q ss_pred CEEEEEeCC-CcEEEEecCCCCC
Q 001363 1044 TQFAVGLTN-GEVYVIEPNEPGD 1065 (1092)
Q Consensus 1044 ~~l~~~~~d-g~v~~w~~~~~~~ 1065 (1092)
..++..+.+ +.-.+|-+.-.+.
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CEEEEEEccCCcEEEEEEecCCC
Confidence 777666654 3444555544443
No 295
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=6.8e-07 Score=99.42 Aligned_cols=339 Identities=14% Similarity=0.110 Sum_probs=188.0
Q ss_pred EEEEEECCCCCEEEEEe----CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 399 VNRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 399 V~~l~~spdg~~las~~----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
-+-..|+|...++|+++ ..|.|.||- ++|+.-+.. +. .-.+++++|+|..- .|+.|-.-|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~---P~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TY---PVHATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-cc---ceehhhhccChHHH--HHhhccccceeEEEecCC
Confidence 34467999999999885 357788874 444433211 22 22366799999866 788888899999999877
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CC--Cc--eEEEEEccCCCEEE---
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PG--LG--CTRMAYSANGRRLF--- 545 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~--~~--i~~~~~s~dg~~l~--- 545 (1092)
.+.-.....|..+|..+.|++ +|..++++..-|.+.+|.++.......... |. .. ..+...++++.-++
T Consensus 91 ~e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 776666678999999999954 778999999999999998875444332221 11 12 23444566643221
Q ss_pred EEecCCCCce--eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC
Q 001363 546 SCGTSKEGES--FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 546 ~~~~~~~~~~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
-+.-.++... ...-|..++.. +... -.-.|+|..++.++.+|+|+--|- .|+..........
T Consensus 169 KaaVtgDe~alD~~fnwk~~~a~--rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~-- 232 (1416)
T KOG3617|consen 169 KAAVTGDESALDEPFNWKESLAE--RSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE-- 232 (1416)
T ss_pred hhhccCchhhhcccccCccchhh--cccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--
Confidence 1111111111 12222211111 0100 012468888999999999988774 4555555544322
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECC-CCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccce
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 702 (1092)
..+-|.+...-+++...+-++.++-.. +|.. ..+..+.++ +........++
T Consensus 233 --vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~--------ee~~~vk~s------------------gk~GgrqGgiA 284 (1416)
T KOG3617|consen 233 --VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTS--------EERCAVKVS------------------GKLGGRQGGIA 284 (1416)
T ss_pred --HHHHHhcccceEEEEeeeceeeEEEecCCCch--------HHhhhhhhc------------------cccCCccCccc
Confidence 335555555555555554444444332 2211 111111111 00000000123
Q ss_pred eeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCcc
Q 001363 703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 782 (1092)
Q Consensus 703 s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 782 (1092)
.+...|.++- ..... ......+.+++++..+..+.++...|.+.+|.-....+ ....++.+
T Consensus 285 ~sEssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f------~g~p~~d~ 345 (1416)
T KOG3617|consen 285 CSESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGF------QGDPTIDV 345 (1416)
T ss_pred cccccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeeecCccc------cCCCCcce
Confidence 3322231111 00111 11456789999999999999999999999997433222 11123445
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEE
Q 001363 783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 819 (1092)
Q Consensus 783 ~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~ 819 (1092)
|.+.+.. ...+.|+.+.|.|--..+++
T Consensus 346 w~l~~~~----------e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 346 WTLNGKR----------ESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred EEecCch----------hhccceEEEEeccccchhhh
Confidence 5544332 24567778888775444443
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.78 E-value=1e-05 Score=83.08 Aligned_cols=234 Identities=16% Similarity=0.156 Sum_probs=153.0
Q ss_pred ceEEeecCCCceEEEEEcCCCc-EEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001363 337 PMSMDFHPVQHTLLLVGTNVGD-TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~dg~-i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~- 414 (1092)
...++.+|+....++.+-.-|+ ..+||..+|+......- -....+.|| -+||+||++|++.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-----------~~gRHFyGH------g~fs~dG~~LytTE 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-----------PPGRHFYGH------GVFSPDGRLLYTTE 69 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-----------CCCCEEecC------EEEcCCCCEEEEec
Confidence 3458899966667888877655 78999999988764211 011124455 5899999999987
Q ss_pred ----eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEe----------------CCCcEEEEECCC
Q 001363 415 ----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------------DDKTIKVWDAVT 474 (1092)
Q Consensus 415 ----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~----------------~d~~i~vwd~~~ 474 (1092)
...|.|-|||...+ ++...++..|.-.-..+.+.|||+.|.++-|+ .+.++..-|..+
T Consensus 70 nd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 70 NDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred cccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 34578999999832 45555777776667788999999854444443 234566778888
Q ss_pred CceeEE--E--ecCCcCeEEEeecccCCccEEEEEecCCe-------EEEEEcCCCCceEEec-------CCCCceEEEE
Q 001363 475 GSRTYS--F--EGHGAPVYSLCPHAKENIHFIFSISVDGK-------IKAWLYDSLGARVDYD-------APGLGCTRMA 536 (1092)
Q Consensus 475 ~~~~~~--~--~~~~~~v~~i~~~~~~~~~~l~s~~~dg~-------i~vwd~~~~~~~~~~~-------~~~~~i~~~~ 536 (1092)
|+.+.. + ..|...|..+++.. +|..++..-..|. +-+++ ..+....+. .-.+-+-+++
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred CceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEE
Confidence 988766 4 33777888888844 4444443322222 23332 222222222 2234688999
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001363 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1092)
+++++..+++.+. ..+.+.+||..+++.+....-. .+..++..+++ ++..+..|.+.
T Consensus 224 ~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~--f~~ssG~G~~~ 280 (305)
T PF07433_consen 224 ADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG--FLVSSGQGQLI 280 (305)
T ss_pred EeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC-----ceeeeeecCCc--eEEeCCCccEE
Confidence 9999998877764 2567999999999998777653 36667776666 44444445543
No 297
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.76 E-value=1e-05 Score=91.54 Aligned_cols=153 Identities=19% Similarity=0.115 Sum_probs=93.6
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCc--CeE-----EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~v~-----~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 529 (1092)
.++.++.++.+..+|.++|+.+.+...... ... .+.-.+.-++..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 467777788999999999998876643220 000 0000011133567788899999999999998887766543
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC--CceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
....+..+ .++ .++.+.. ++.++.+|..+|+.+-.+....... ....+-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v-~~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVV-SDG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEE-ECC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 22111122 234 4444432 5679999999999887765432000 00001111 1345777888999999999
Q ss_pred CCCceEEEEe
Q 001363 608 NKVQLLTTID 617 (1092)
Q Consensus 608 ~~~~~~~~~~ 617 (1092)
.+|+.+....
T Consensus 223 ~~G~~~W~~~ 232 (394)
T PRK11138 223 EQGQLIWQQR 232 (394)
T ss_pred cCChhhheec
Confidence 9988766543
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.75 E-value=8.8e-08 Score=98.32 Aligned_cols=160 Identities=9% Similarity=0.083 Sum_probs=114.7
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEEcCCce----eeEeeccccCCeEEEEEcCCCCEEE---EEeCCCcEEEEEcCCCc
Q 001363 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDALNILV---SSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~l~---s~s~Dg~I~iwd~~~~~ 919 (1092)
..+..++ ++++||++..+....+++..... ++..... ...-+++.|..+..... .++....+.+|+...+.
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3445666 88899988888887777765433 2222221 12233444444443333 34555666777766422
Q ss_pred eeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEEC
Q 001363 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 998 (1092)
....-||.. .+..+++|||+++|+++ .|..|++-.+...-.+..+.-||..-|..++.-+ +..|+++|.
T Consensus 144 ------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sG 213 (390)
T KOG3914|consen 144 ------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSG 213 (390)
T ss_pred ------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCC
Confidence 233445655 79999999999999996 7889999999888888888899999999999865 456999999
Q ss_pred CCcEEEEEcCCCceEEeecc
Q 001363 999 DGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 999 Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
|+++++||+.+|+.+..+..
T Consensus 214 D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCcEEEEecccCCcccccch
Confidence 99999999999999877653
No 299
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.75 E-value=1.1e-06 Score=84.93 Aligned_cols=148 Identities=11% Similarity=-0.036 Sum_probs=108.2
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
+.++++|+|++++++.+....|..|.+...............+..=.+..|+.... .++++..||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999976544332223444455566889998887 7999999999999999865443
Q ss_pred EE-----EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--------CceEEEEEccCCCEEE
Q 001363 479 YS-----FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--------LGCTRMAYSANGRRLF 545 (1092)
Q Consensus 479 ~~-----~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--------~~i~~~~~s~dg~~l~ 545 (1092)
.. -..|.+.+..+.|++.+--.+|+..-.-+.+.+.|+++......+.... ..+..-.|+.++.-+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 32 2358899999999876555677777777899999999877655433222 2355666666666555
Q ss_pred EEe
Q 001363 546 SCG 548 (1092)
Q Consensus 546 ~~~ 548 (1092)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 544
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.71 E-value=1e-05 Score=80.15 Aligned_cols=249 Identities=10% Similarity=0.106 Sum_probs=134.2
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d 417 (1092)
|.++.++||+ +||.- .|..|.|=.....-.....++. +.+...-.=..++||||+.+||.+...
T Consensus 1 W~~~~~~~Gk-~lAi~-qd~~iEiRsa~Ddf~si~~kcq--------------VpkD~~PQWRkl~WSpD~tlLa~a~S~ 64 (282)
T PF15492_consen 1 WHLALSSDGK-LLAIL-QDQCIEIRSAKDDFSSIIGKCQ--------------VPKDPNPQWRKLAWSPDCTLLAYAEST 64 (282)
T ss_pred CceeecCCCc-EEEEE-eccEEEEEeccCCchheeEEEe--------------cCCCCCchheEEEECCCCcEEEEEcCC
Confidence 4578899998 66654 4566666655443211111111 122333445679999999999999999
Q ss_pred CEEEEEEccCCCcccc--eEEEc-ccccceeEEEEecCC-----CcEEEEEEeCCCcEEEEECC-----CCceeEEEec-
Q 001363 418 HIVQLYAYHGGSDARQ--QLEID-AHVGNVNDLAFSAPC-----KQISVITCGDDKTIKVWDAV-----TGSRTYSFEG- 483 (1092)
Q Consensus 418 ~~i~iwd~~~~~~~~~--~~~~~-~h~~~v~~~~~s~d~-----~~l~l~s~~~d~~i~vwd~~-----~~~~~~~~~~- 483 (1092)
|+|+++|+.+.+.... ...+. .-...|..+.|.+-. .. .|+.-..+|.++=|-+. ..+..++|..
T Consensus 65 G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~ 143 (282)
T PF15492_consen 65 GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS 143 (282)
T ss_pred CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEec
Confidence 9999999986443210 00011 123467777776532 11 34555567777766542 2234444432
Q ss_pred --CCcCeEEEeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE--EEecCCCC--cee
Q 001363 484 --HGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF--SCGTSKEG--ESF 556 (1092)
Q Consensus 484 --~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~--~~~~~~~~--~~~ 556 (1092)
+...|.++.+++.. ++|+.|+. ...-..+ ......+++-.+-.+..+.. ....+... ..+
T Consensus 144 ~~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~ 210 (282)
T PF15492_consen 144 SHYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKR 210 (282)
T ss_pred ccCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEccccCccccccccc
Confidence 46789999997754 45555543 2210000 00111111111111111111 11100000 001
Q ss_pred EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
..+|.+-+... +.........|..|..+|||..|++...+|.|.+|++.+-++......+
T Consensus 211 ~~~~~~~~~~~---fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 211 RGLLRIPSFKF---FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cceeeccceee---eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 22333222211 1111222478999999999999999999999999999987776665443
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.70 E-value=1.6e-07 Score=102.93 Aligned_cols=295 Identities=13% Similarity=0.158 Sum_probs=188.1
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC-cccceEEEcccc--cceeEEEEecCCCcE-EEEEEeCCCcEEEE
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHV--GNVNDLAFSAPCKQI-SVITCGDDKTIKVW 470 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~--~~v~~~~~s~d~~~l-~l~s~~~d~~i~vw 470 (1092)
-.+++.++..+|.|+-+|.++.-| +.+-|+...- ..+ +-.|. -.|-...|+|..... .+|+.+ .....+|
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr----~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiw 96 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR----WLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIW 96 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCce----eeeccCcchhcceecccCCCCceeEEecC-cchhhhh
Confidence 346788999999999999999888 6666776432 121 11232 246677888865433 455444 4556789
Q ss_pred ECCCC---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEE
Q 001363 471 DAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 471 d~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
++... ..-..+.+|...|+.+.|++.. ...+++++.|-.+..||+++..... ....-......+.|+.....+.+
T Consensus 97 nlA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla 175 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA 175 (1081)
T ss_pred hhhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh
Confidence 87643 3345668999999999998753 3689999999999999999876544 33333445567888874444443
Q ss_pred EecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCC
Q 001363 547 CGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 624 (1092)
.+. ...|.+||.+.| ..+..+++|. ..|+.+.|..- ...+.+.+.||+|+.||............... ..
T Consensus 176 ssh----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~-~p 247 (1081)
T KOG0309|consen 176 SSH----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN-FP 247 (1081)
T ss_pred hcc----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc-Cc
Confidence 332 334999999865 5566777766 77888887653 35678899999999999875433222211111 23
Q ss_pred CceEEEccCCCEEEE--EeCCCeEEE---------EECCC-CceeeecccccCceeeeeecCCCccccccccCCceeecC
Q 001363 625 NPRICFNKNGTLLAV--IANENRIKI---------LETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1092)
Q Consensus 625 v~~v~~s~~~~~l~~--~~~dg~i~i---------w~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1092)
+..-++-|-|.-.++ .-.+..+.+ |+..+ .+++..+.||.+.|....|-...... +
T Consensus 248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~------------~ 315 (1081)
T KOG0309|consen 248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD------------G 315 (1081)
T ss_pred ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc------------C
Confidence 555555553332222 111223333 33333 36788888998888766664332211 1
Q ss_pred CCCCCCccceeeccccccceeccc
Q 001363 693 DPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 693 ~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
+.....-.|++-+.|.++|+|.+.
T Consensus 316 d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 316 DYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred CCCccceeEEEeecCCceEeeecc
Confidence 112223458899999999999875
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.68 E-value=3.1e-07 Score=90.30 Aligned_cols=261 Identities=13% Similarity=0.197 Sum_probs=164.0
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCce-----eeEEecCCCC------------CeEEEEEcCC-CCCEEEE
Q 001363 801 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPSP------------TATSLAFNPH-DNNVIAI 861 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~-----~~~~~~~~~~------------~i~~l~~s~~-d~~~las 861 (1092)
....|+++.|...|.||++|. +|.|.+|.-+... ....+++|.. .|..+.|..+ +...+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 567789999999999999998 6889998765332 2234555543 3566666542 2335556
Q ss_pred EeCCCcEEEEEcCCcee-------------------------------------e----E-ee-ccccCCeEEEEEcCCC
Q 001363 862 GMDDSTILIYNARSSEV-------------------------------------I----S-KL-EGHSKRVTGLVFSDAL 898 (1092)
Q Consensus 862 g~~dg~v~iwd~~~~~~-------------------------------------~----~-~l-~~h~~~V~~l~~spdg 898 (1092)
.+.|++|++|.+..... + . .. .+|.-.|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 77899999998753200 0 1 11 3577778899999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE--EeCCcEEEEEcCCceee------
Q 001363 899 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCL------ 970 (1092)
Q Consensus 899 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~i~lwd~~~~~~~------ 970 (1092)
..++++ .|-.|-+|+++-.......+--.+........-|++..|+|....+.. ++.|.|++-|++.....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 888876 566799999875332111111111111111135788999998765554 67899999998732211
Q ss_pred -ee--------eccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc-eEEeeccccc----cCCCCccccccc-eE
Q 001363 971 -KQ--------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE-VQCRILSTAY----LRPTTSCLHVYP-HA 1035 (1092)
Q Consensus 971 -~~--------~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~-~~~~~~~~~~----~~~~~~~~~v~~-~~ 1035 (1092)
.. ++.+-...|..+.||++|+++++-.. -+|++||+...+ .+.++..... +..-+-+++|+. ..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 00 11222667889999999999997654 589999998653 3444421111 111112344544 56
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1036 ~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
+.|+. |...+.+|+..+...++-...++
T Consensus 343 isfSg-d~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 343 ISFSG-DDKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred EEecC-CcccccccccccceeeeccccCC
Confidence 77887 45778888887777776644333
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=1.3e-08 Score=113.10 Aligned_cols=217 Identities=15% Similarity=0.232 Sum_probs=157.0
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|....+|++||-+.+.|++|+..|.|+++++.+|.... ...+|..+|+.+.=+.||..++..+....--..+|+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 66789999999999999999999999999999999997665 567899999999999999952222233333578999
Q ss_pred CCC-CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC----CCceEEEEEccCCCEEEE
Q 001363 472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 472 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~~~~s~dg~~l~~ 546 (1092)
+.+ +...++|.+ -.++.|+.+ .+.-+.|+......+||+++.....++-.. ...-....|+|+.+.++-
T Consensus 1174 ~~s~~~~~Hsf~e----d~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE----DKAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred cccccCccccccc----cceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 764 555666653 234555433 233344555567889999998876653221 123366789999988875
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
-| .+||.+..+.++.|.... . -..-.|+|.|..++.-++ |||+++.+.+...+.-. -.
T Consensus 1248 dG---------vLWDvR~~~aIh~FD~ft---~-~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld----qc 1305 (1516)
T KOG1832|consen 1248 DG---------VLWDVRIPEAIHRFDQFT---D-YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD----QC 1305 (1516)
T ss_pred Cc---------eeeeeccHHHHhhhhhhe---e-cccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----ce
Confidence 32 579999888887776544 1 122359999999999775 99999999887765432 35
Q ss_pred eEEEccCCCEEEE
Q 001363 627 RICFNKNGTLLAV 639 (1092)
Q Consensus 627 ~v~~s~~~~~l~~ 639 (1092)
.+.|+..|..+..
T Consensus 1306 ~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYA 1318 (1516)
T ss_pred EEEeccCccchhh
Confidence 6888888876553
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.66 E-value=6.8e-06 Score=86.21 Aligned_cols=223 Identities=13% Similarity=0.123 Sum_probs=139.0
Q ss_pred CCeEEEEEcCCceeeEEecCC--CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCC
Q 001363 822 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 822 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 899 (1092)
+|.|..||..+|+.+...... .....+.++. ++..+++++.++.++.||..+|+.+.+... .+++.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999998887531 1222222332 345777778999999999999999877764 22222111 22455
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCC
Q 001363 900 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS 978 (1092)
Q Consensus 900 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h~ 978 (1092)
.++.++.|+.|..+|..+++..-.......+... .........++..++++ .++.|..+|..+|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 6676778889999999998754431111111110 12233333347777765 589999999999998776543221
Q ss_pred C---------CEEEEEEecCCCEEEEEECCCc-EEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEE
Q 001363 979 V---------PISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1048 (1092)
Q Consensus 979 ~---------~v~~l~fs~dg~~l~t~~~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~ 1048 (1092)
. .+..-....++ .++.++.++. +.+ |+.+|+.+.+.. ... ... ...+ ++..+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~~---~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IYS---LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------ECE---CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----ccC---Ccee-eCCEEEE
Confidence 1 12222233355 7777777885 555 999999663221 111 111 1222 3577888
Q ss_pred EeCCCcEEEEecCCCCCccc
Q 001363 1049 GLTNGEVYVIEPNEPGDTWA 1068 (1092)
Q Consensus 1049 ~~~dg~v~~w~~~~~~~~~~ 1068 (1092)
++.++.|..||+...+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999998887774
No 305
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.65 E-value=2.2e-05 Score=81.52 Aligned_cols=232 Identities=14% Similarity=0.150 Sum_probs=143.8
Q ss_pred CccccCCCCCceeeecCCCC---CCCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001363 780 PRLYQPRHGPQFMVNDTTDS---NSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 853 (1092)
Q Consensus 780 ~~~~~~~~g~~~~~~~l~~~---~~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 853 (1092)
+.+||+.+-.......++.. ........+++|.||+++.+.. .-.|.|.|+...+.+..+..+. ...- + |
T Consensus 69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~~i--y-P 144 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CWLI--Y-P 144 (342)
T ss_dssp EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EEEE--E-E
T ss_pred EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EEEE--E-e
Confidence 34455555444444444431 0112334578999999999886 4779999999999988876432 2111 2 2
Q ss_pred CCCCEEEEEeCCCcEEEEEcC-CceeeEe----eccccCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 001363 854 HDNNVIAIGMDDSTILIYNAR-SSEVISK----LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 927 (1092)
Q Consensus 854 ~d~~~lasg~~dg~v~iwd~~-~~~~~~~----l~~h~~~V-~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 927 (1092)
..++-+.+.|.||.+.-..+. .|+...+ |..-..++ ..-+++.++..++..+..|.|+--|+............
T Consensus 145 ~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 145 SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence 234567788999999999887 4554322 11112222 23455556666766889999999999887655544444
Q ss_pred cCCCCc---CC-CCCceEEEEccCCCEEEE----EeCC-------cEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-
Q 001363 928 TPDGVM---TL-APSETHIQFHKDQTRFLL----VHET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR- 991 (1092)
Q Consensus 928 ~~~~~~---~~-~~~v~~l~~s~dg~~la~----~~d~-------~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~- 991 (1092)
...... .. .+.-.-+++++....|.+ +.++ .|.+||+.+++.+.++... .++.++..|.|.+
T Consensus 225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKP 302 (342)
T ss_dssp SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-
T ss_pred ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCc
Confidence 321100 00 034567899887766655 2222 4889999999999886644 3577999999887
Q ss_pred EEEEE-ECCCcEEEEEcCCCceEEeec
Q 001363 992 MVFTS-FVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 992 ~l~t~-~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
+|++. ..++.+.+||..+|+.+.++.
T Consensus 303 ~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 45444 357899999999999998887
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.65 E-value=6.4e-05 Score=78.97 Aligned_cols=221 Identities=14% Similarity=0.145 Sum_probs=139.2
Q ss_pred EEEEec-CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe-cCCCE
Q 001363 739 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAY 816 (1092)
Q Consensus 739 ~l~~s~-~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s-~dg~~ 816 (1092)
+++|.+ ++..+++-...+.|..|+... +. .....+ .....+++. +++++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~----------------------~~-~~~~~~------~~~~G~~~~~~~g~l 54 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT----------------------GE-VEVIDL------PGPNGMAFDRPDGRL 54 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTT----------------------TE-EEEEES------SSEEEEEEECTTSEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCC----------------------Ce-EEEEec------CCCceEEEEccCCEE
Confidence 567777 566555555567777666433 22 211222 126677887 66555
Q ss_pred EEEEeCCeEEEEEcCCceeeEEecC-----CCCCeEEEEEcCCCCCEEEEEeCC--------CcEEEEEcCCceeeEeec
Q 001363 817 LFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLE 883 (1092)
Q Consensus 817 l~~~sdg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~lasg~~d--------g~v~iwd~~~~~~~~~l~ 883 (1092)
+ .+..+.+.++|..+++....... .....+.+++.| +|++.++.... |.|..++.. ++......
T Consensus 55 ~-v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 55 Y-VADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp E-EEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred E-EEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 4 45556666669988865443332 334678999999 88877776544 457777777 55433333
Q ss_pred cccCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCc--eeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcE
Q 001363 884 GHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 959 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~-s~s~Dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i 959 (1092)
.-.....|+|+||++.|. +-+..+.|..+++.... ......+....... +..-.+++..+|++.++ ...+.|
T Consensus 132 -~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 132 -GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp -EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred -CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEE
Confidence 445578899999998765 56677888888886432 22223333222221 13668999999998887 467899
Q ss_pred EEEEcCCceeeeeeccCCCCCEEEEEEe-cCCCEEEEEE
Q 001363 960 AIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSF 997 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~ 997 (1092)
.+++.. |+.+..+..+ ...+++++|. +|.+.|+..+
T Consensus 208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred EEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 999987 8877775554 4589999995 6666666543
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.64 E-value=6.7e-05 Score=78.81 Aligned_cols=219 Identities=16% Similarity=0.126 Sum_probs=142.9
Q ss_pred EEeecC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC-CCCCEEEEEeC
Q 001363 339 SMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-PDGSLLGVAYS 416 (1092)
Q Consensus 339 ~v~~sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s-pdg~~las~~~ 416 (1092)
+++|.+ +|. |+.+-...+.|..|+..++..... ... ....+++. ++|++ +++..
T Consensus 4 gp~~d~~~g~-l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~l-~v~~~ 59 (246)
T PF08450_consen 4 GPVWDPRDGR-LYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGRL-YVADS 59 (246)
T ss_dssp EEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSEE-EEEET
T ss_pred ceEEECCCCE-EEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCEE-EEEEc
Confidence 578898 554 788877889999999988765431 111 26677777 66554 44555
Q ss_pred CCEEEEEEccCCCcccceEEEc--c-cccceeEEEEecCCCcEEEEEEeCC--------CcEEEEECCCCceeEEEecCC
Q 001363 417 KHIVQLYAYHGGSDARQQLEID--A-HVGNVNDLAFSAPCKQISVITCGDD--------KTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~~~~s~d~~~l~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
.+ +.++|..+++.. ...... . .....+.+++.++|+ +.++.... |.|..++.. ++...... .-
T Consensus 60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL 133 (246)
T ss_dssp TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence 55 566699887533 222331 2 345788999999999 56665433 457777766 55433333 34
Q ss_pred cCeEEEeecccCCccEE-EEEecCCeEEEEEcCCCCc----eE-E--ecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 486 APVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGA----RV-D--YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~----~~-~--~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
...+.++|++ +++.| ++-+..+.|..++++.... .. . +....+....+++..+|+..++... .+.|
T Consensus 134 ~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I 207 (246)
T PF08450_consen 134 GFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRI 207 (246)
T ss_dssp SSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEE
T ss_pred ccccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEE
Confidence 5568889965 55555 5667788899999875443 11 1 2222234788999999987776553 5569
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEE-cCCCCEEEEEe
Q 001363 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAG 597 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s 597 (1092)
.++|.. |+.+..+.... ..+++++| .++.+.|++.+
T Consensus 208 ~~~~p~-G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELPV---PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETT-SCEEEEEE-SS---SSEEEEEEESTTSSEEEEEE
T ss_pred EEECCC-ccEEEEEcCCC---CCEEEEEEECCCCCEEEEEe
Confidence 999988 88888887764 57899999 46767776654
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.2e-06 Score=90.99 Aligned_cols=298 Identities=13% Similarity=0.140 Sum_probs=190.8
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
|...|+.+..+ -.+++++++-||.++.|.-..- .|..+.. ....|...+.+++.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i--------------------sGvEfVK---hFraHL~~I~sl~~S~ 63 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI--------------------SGVEFVK---HFRAHLGVILSLAVSY 63 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCc--------------------cceeehh---hhHHHHHHHHhhhccc
Confidence 66667666544 4567899999999999862210 1111111 1113777888999999
Q ss_pred CCCEEEEEe--CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCC--CEEEEEeCCCcEEEEEcCCce-eeEee-ccc
Q 001363 813 NDAYLFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDN--NVIAIGMDDSTILIYNARSSE-VISKL-EGH 885 (1092)
Q Consensus 813 dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~--~~lasg~~dg~v~iwd~~~~~-~~~~l-~~h 885 (1092)
+|.++.+.+ |..++++|+++...+..++-.. ....+...++.|. .+-++.-.+|.+.++|-.... ....+ .-|
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH 143 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH 143 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence 999999976 6889999998776653332211 1122333344111 233334467899999976543 33333 349
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee--eee------eecCCCCcCCCCCceEEEEccCCCEEEE-EeC
Q 001363 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT--CRS------LQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE 956 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~--~~~------~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d 956 (1092)
..+|.++.+++-+..++|....|.|.-|..+. ..+. ... -..+-+.........++.|+|+|..+++ +.|
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D 222 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD 222 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence 99999999999999999999999999999884 1000 000 0001111122245789999999999999 788
Q ss_pred CcEEEEEcCCceeeeeeccC-------------------------------C-CCCEEEEEEecCCCEEEEEECCCcEEE
Q 001363 957 THLAIYEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 957 ~~i~lwd~~~~~~~~~~~~~-------------------------------h-~~~v~~l~fs~dg~~l~t~~~Dg~i~v 1004 (1092)
..|++++..+|+.++.+-.. | ...-+.++|...|.+|+-++-=| |+|
T Consensus 223 rkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikv 301 (558)
T KOG0882|consen 223 RKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV 301 (558)
T ss_pred cEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE
Confidence 99999999998766542110 2 34446678989999999887654 899
Q ss_pred EEcCCCceEEeecccc---------ccCCC-Ccccc------ccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001363 1005 HEASNLEVQCRILSTA---------YLRPT-TSCLH------VYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 1005 wd~~~~~~~~~~~~~~---------~~~~~-~~~~~------v~~~~~~~~p~d~~~l~~~~~dg~v~~w 1058 (1092)
.++.++.+.+.+.... +.... .+... ..++ +.+.+ |+..++++-.-..+++|
T Consensus 302 in~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 302 INLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC-CCeEEEeeeecceEEEE
Confidence 9999998876543111 11000 00000 1111 22444 67888899888999998
No 309
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.60 E-value=9.6e-07 Score=86.97 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=109.4
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce---eeEEecCCC-----CCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001363 800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1092)
.|...+.++.|..|.+.++++.|=.|-+|+++--. .+..+++|. .-|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 47888999999999999999999999999986322 234445554 3578999999777888889999999999
Q ss_pred EcCCcee----------------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001363 872 NARSSEV----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 872 d~~~~~~----------------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
|++...+ +.-+.+-...|..+.|+++|+++++-+. -+|+|||+...+. ++.+..-|...
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~----pikTi~~h~~l 324 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN----PIKTIPMHCDL 324 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC----CceeechHHHH
Confidence 9973211 1112223456888999999999997654 5699999986431 22222111100
Q ss_pred ---------CCC---ceEEEEccCCCEEEEE-eCCcEEEEE
Q 001363 936 ---------APS---ETHIQFHKDQTRFLLV-HETHLAIYE 963 (1092)
Q Consensus 936 ---------~~~---v~~l~~s~dg~~la~~-~d~~i~lwd 963 (1092)
... -..+.||.|.+.+.+| ..+...+|-
T Consensus 325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 011 2457889888888874 455555555
No 310
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.58 E-value=1.4e-05 Score=77.61 Aligned_cols=201 Identities=14% Similarity=0.104 Sum_probs=134.4
Q ss_pred CEEEEEe-CCeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEE
Q 001363 815 AYLFSAS-GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892 (1092)
Q Consensus 815 ~~l~~~s-dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 892 (1092)
-+||.|+ .|...+|...+.+... ....+...|+-+.-.-+...-+..++.|.++++.+++.+.....+.-..-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 4666665 5899999998665433 3333444332211111122345567888888888887654333222111237889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceee-
Q 001363 893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCL- 970 (1092)
Q Consensus 893 ~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~- 970 (1092)
++|+|++++++.+....|..|.++.......+....... ..-.+..||.....+|+ ..||++.|||++.....
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-----CCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 999999999999999999999998754333221111111 23568899999999998 68999999999865432
Q ss_pred ---eeeccCCCCCEEEEEEecCCC--EEEEEECCCcEEEEEcCCCceEEeecccc
Q 001363 971 ---KQWFPISSVPISQATFSCDCR--MVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 971 ---~~~~~~h~~~v~~l~fs~dg~--~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
....+.|.+.+..+.||+-|. +|+..-.-+.+.|-|+++++-...+....
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence 223456899999999998663 45555566789999999998887776444
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.56 E-value=1.5e-05 Score=83.53 Aligned_cols=195 Identities=14% Similarity=0.112 Sum_probs=121.4
Q ss_pred CCCEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee-cccc---C
Q 001363 813 NDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHS---K 887 (1092)
Q Consensus 813 dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~---~ 887 (1092)
++..++++ .++.+..||..+|+.+..+............ .+..+++++.++.++.+|..+|+.+... .... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 45555555 5799999999999998887653221122222 3346666778899999999999998874 3221 1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC--CCCCceEEEEccCCCEEEEEeCCc-EEEEEc
Q 001363 888 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT--LAPSETHIQFHKDQTRFLLVHETH-LAIYEA 964 (1092)
Q Consensus 888 ~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~s~dg~~la~~~d~~-i~lwd~ 964 (1092)
.........++..++.+..++.|..+|.++|+..-............ ....+..-....++..+++..++. +.+ |+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~ 190 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DL 190 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ET
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-EC
Confidence 12223333347888888889999999999988654333322221110 000122333333554444456665 555 99
Q ss_pred CCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEe
Q 001363 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~ 1015 (1092)
.+++.+-. .. ...+.. ....++..|+.++.++.+..||+.+|+....
T Consensus 191 ~tg~~~w~-~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 191 ATGEKLWS-KP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEE-EC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEE-ec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 99986632 11 122222 2457788888888999999999999988743
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.56 E-value=1.4e-06 Score=83.90 Aligned_cols=209 Identities=14% Similarity=0.207 Sum_probs=126.4
Q ss_pred ceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001363 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~ 416 (1092)
|+.+.|+-+- .|+++..++.+.....-++.+.. .|.=.....+++. +..|.++-.+-+.+--++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCceee--eeccCCCCCcccccccCCceEecCC
Confidence 6667777654 57888888777776655544332 2221111122222 2235554444455556789999999
Q ss_pred CCEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEe-----CCCcEEEEECCCCceeEEEecCCcCeEE
Q 001363 417 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1092)
||.+.+.+.+.-..+.. .+. .|.+. .+.+....+. .+.+++ .-+..++|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~~~~~~--~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALMS--RIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhhh--hcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 99999999876222111 111 12221 1223333344 233322 2234566665544333222222334888
Q ss_pred EeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCC
Q 001363 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
++-+|... +.+++|+.||.+-+||++...... .+..|+.++..+.|+| ++..|+++++ ++.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 88887654 688999999999999999875443 5677888999999999 5678888886 55599999754
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.54 E-value=9.6e-05 Score=87.07 Aligned_cols=250 Identities=14% Similarity=0.164 Sum_probs=147.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceee
Q 001363 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1092)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1092)
+.|.++.|..+.+.++.+...|.|.+-|.++......-... ..|.+++|+||+.+++..+..+++.+-...- .++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~f-~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKDF-EPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEeccc-cchh
Confidence 57999999999999999999999999988876554333333 3489999999999999999988887754321 0110
Q ss_pred ecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEE
Q 001363 659 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS 738 (1092)
Q Consensus 659 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~ 738 (1092)
...-+. ...+.+....+|++.....|.+ +...
T Consensus 145 E~~L~~------d~~~~sk~v~VGwGrkeTqfrg------------------------------------------s~gr 176 (1265)
T KOG1920|consen 145 EKPLDA------DDERKSKFVNVGWGRKETQFRG------------------------------------------SEGR 176 (1265)
T ss_pred cccccc------ccccccccceecccccceeeec------------------------------------------chhh
Confidence 000000 0000011111111111111100 0000
Q ss_pred EEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeec-CCCCCCCCCeeEEEEecCCCEE
Q 001363 739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYL 817 (1092)
Q Consensus 739 ~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-l~~~~~~~~v~~~~~s~dg~~l 817 (1092)
..+.-+ ..... +........-..+.|.-||+++
T Consensus 177 ~~~~~~----------------------------------------------~~~ek~~~~~~~~~~~~~IsWRgDg~~f 210 (1265)
T KOG1920|consen 177 QAARQK----------------------------------------------IEKEKALEQIEQDDHKTSISWRGDGEYF 210 (1265)
T ss_pred hccccc----------------------------------------------ccccccccchhhccCCceEEEccCCcEE
Confidence 000000 00000 0000012223468999999999
Q ss_pred EEEe-----C-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe---CCCcEEEEEcCC---ceeeEeeccc
Q 001363 818 FSAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS---SEVISKLEGH 885 (1092)
Q Consensus 818 ~~~s-----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~---~~~~~~l~~h 885 (1092)
|+.. + ..|+|||-+ |.+-..-....+.-.+++|-| .|.++|+-. .|+.|.+|.-+. |+....+...
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d 288 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD 288 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCccc
Confidence 9853 4 679999987 554433333445557899999 888888753 455799987653 2223333434
Q ss_pred cCCeEEEEEcCCCCEEEE---EeCCCcEEEEEcCCCceeeeeeeec
Q 001363 886 SKRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGIQTCRSLQT 928 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s---~s~Dg~I~iwd~~~~~~~~~~~~~~ 928 (1092)
..+|..++|+.++..||+ ......|++|-+..........++.
T Consensus 289 e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~ 334 (1265)
T KOG1920|consen 289 EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQF 334 (1265)
T ss_pred ccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEec
Confidence 455999999999999998 4555569999998865444333333
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.51 E-value=2.4e-05 Score=87.99 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=90.9
Q ss_pred EEecCCCEEEEEeCCeEEEEEcCC----c-eeeEEecCCCCCeEEEEEcCCCCCEEEEE-eCCCcEEEEEcCCcee----
Q 001363 809 ALSKNDAYLFSASGGVISLYIVMT----F-KTILTIMPPSPTATSLAFNPHDNNVIAIG-MDDSTILIYNARSSEV---- 878 (1092)
Q Consensus 809 ~~s~dg~~l~~~sdg~i~iwd~~~----~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~~~~~---- 878 (1092)
++.++|++... .++.|.+.|..+ + +.+..+. -......++++| |+++++++ ..+.+|.|+|+.+.+.
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 34557887665 467899999988 3 4444443 455678899999 77766654 4588999999988552
Q ss_pred --------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------CceeeeeeeecCCCCcCCCCCceEEEE
Q 001363 879 --------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG------WGIQTCRSLQTPDGVMTLAPSETHIQF 944 (1092)
Q Consensus 879 --------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~l~~ 944 (1092)
+.+.+--.+ -...+|.++|+...|..-|..|..|++.. ++. ....+....-+.. +-.+.-
T Consensus 360 ~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~-~~~v~~k~dV~y~----pgh~~~ 433 (635)
T PRK02888 360 KIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEK-VDPIVQKLDVHYQ----PGHNHA 433 (635)
T ss_pred cCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhcccc-CCcceecccCCCc----cceeee
Confidence 334333223 34578999999999999999999999986 111 1123333333322 223333
Q ss_pred ------ccCCCEEEEE
Q 001363 945 ------HKDQTRFLLV 954 (1092)
Q Consensus 945 ------s~dg~~la~~ 954 (1092)
.|||++|++.
T Consensus 434 ~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 434 SMGETKEADGKWLVSL 449 (635)
T ss_pred cCCCcCCCCCCEEEEc
Confidence 7899999883
No 315
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.50 E-value=0.00077 Score=65.65 Aligned_cols=136 Identities=13% Similarity=-0.019 Sum_probs=88.6
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC
Q 001363 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 579 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1092)
.+++.|+..+.+.--|..++........ +..+.+-+.- -|++++.+.. .+.+++.+.++|.....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence 4677777777777777777665554332 2233333322 4666777776 4459999999998887777644 2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE
Q 001363 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1092)
--......+++..+.+|+.|++.+..|..+...+...+..+.. ..+-+..|-...|.++...|.+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceE
Confidence 2233456788999999999999999999999999887766553 2334445522233334343443
No 316
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.50 E-value=0.00011 Score=76.66 Aligned_cols=285 Identities=12% Similarity=0.128 Sum_probs=153.1
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeCCCC---
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG--- 621 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~--- 621 (1092)
+.++++|..+++.+..+..- -...+..+|+++.+++++ ..-.|.+||..+-.....+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 45999999999988888763 345577899999998754 334699999999988887765542
Q ss_pred --CCCCceEEEccCCCEEEEEeC--CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCC
Q 001363 622 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 697 (1092)
Q Consensus 622 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 697 (1092)
.......+++.||+++.+... ..+|.|.|+..++.+..+.... |.-+-|.+
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~--------------------- 146 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG--------------------- 146 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE---------------------
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC---------------------
Confidence 123456788888888877543 4678888888776655443211 00111100
Q ss_pred CccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccc
Q 001363 698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 777 (1092)
Q Consensus 698 ~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 777 (1092)
.+.+.+-+.||.+....++............-......-+..-++...+..++-.+-+|.++--++.......
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~------- 219 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF------- 219 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-------
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-------
Confidence 0112333334444333333111110000000000111122233444455555556667777766655432211
Q ss_pred cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CC-------eEEEEEcCCceeeEEecCCCCCe
Q 001363 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GG-------VISLYIVMTFKTILTIMPPSPTA 846 (1092)
Q Consensus 778 ~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg-------~i~iwd~~~~~~~~~~~~~~~~i 846 (1092)
..-|...+...... .. ..+.-.-+++++..+.|.+.- ++ .|.++|+.+++.+.++.. ...+
T Consensus 220 --~~~~~~~t~~e~~~-~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~ 291 (342)
T PF06433_consen 220 --GKPWSLLTDAEKAD-GW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPI 291 (342)
T ss_dssp --EEEEESS-HHHHHT-TE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEE
T ss_pred --cCcccccCcccccc-Cc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCcc
Confidence 01121111000000 00 012223466766554444431 11 388999999999998873 2457
Q ss_pred EEEEEcCCCCCEEEEEe-CCCcEEEEEcCCceeeEeecc
Q 001363 847 TSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 847 ~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
.+++++.++..+|++.+ .++.+.+||..+|+.+.++.+
T Consensus 292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 79999996666776554 578999999999999988874
No 317
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.49 E-value=4.3e-05 Score=85.99 Aligned_cols=182 Identities=12% Similarity=0.069 Sum_probs=117.5
Q ss_pred EecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC----cEEEEEcCCceeeEeec
Q 001363 810 LSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLE 883 (1092)
Q Consensus 810 ~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~ 883 (1092)
++|||+.+...+ .+.+.+.|.++.+...++.-. +....++++| +++++++.+.+. ++..-+..+...+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 567887765554 477889999988877776533 2456789999 888888776322 22222222211111111
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----CceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--eCC
Q 001363 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HET 957 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~ 957 (1092)
- ..+ -++.++|++... .++.|.+.|..+ +. .....+.... ....+++||||++++++ .+.
T Consensus 278 i--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVanklS~ 343 (635)
T PRK02888 278 I--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKLSP 343 (635)
T ss_pred h--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCCCC
Confidence 0 000 133457877665 367799999887 22 1122333332 35689999999999984 578
Q ss_pred cEEEEEcCCcee------------eeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001363 958 HLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 958 ~i~lwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
++.|+|+.+.+. ..+... .......+|.++|....|-.-|..|..|++..
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999999987553 222221 34455678999999888888999999999987
No 318
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.47 E-value=4.6e-07 Score=63.29 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=37.2
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd 914 (1092)
|+++.++.+|.+.|++|+|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.47 E-value=6.6e-05 Score=83.25 Aligned_cols=267 Identities=14% Similarity=0.189 Sum_probs=148.8
Q ss_pred cCCCceEEEEE--------cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 343 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 343 spdg~~llasg--------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
|||++++|..- +..+.+.|+|+++++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78998765522 123668889988876553 12225678889999999999998
Q ss_pred eCCCEEEEEEccCCCcccceEEEcc-------c---------ccceeEEEEecCCCcEEEEEEeCCCc------------
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKT------------ 466 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~~~~s~d~~~l~l~s~~~d~~------------ 466 (1092)
. ++.|.+++..++...+. +..| - -+.-..+.|||||+++.++... +..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d-~~~v~~~~~~~~~~~ 136 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD-EREVPEYPLPDYSPP 136 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE--TTS-EEEEEEESSS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC-CcCCceEEeeccCCc
Confidence 5 56799999887743321 2222 0 1123578899999963333222 111
Q ss_pred -----------------------EEEEECCCCceeE-EEe----cCCcCeEEEeecccCCccEEEEE--ecCC---eEEE
Q 001363 467 -----------------------IKVWDAVTGSRTY-SFE----GHGAPVYSLCPHAKENIHFIFSI--SVDG---KIKA 513 (1092)
Q Consensus 467 -----------------------i~vwd~~~~~~~~-~~~----~~~~~v~~i~~~~~~~~~~l~s~--~~dg---~i~v 513 (1092)
+.|+|+++++... ... .-...+..+.|.+ ++..|+.. ..+. .+.+
T Consensus 137 ~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 137 DSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp TESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEE
T ss_pred cccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEE
Confidence 3344554444321 111 1223345555543 33423222 2222 2556
Q ss_pred EEcCCCCceEEecC-CCCc---eEEEEEc-cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce-EEEEEc
Q 001363 514 WLYDSLGARVDYDA-PGLG---CTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-SVVHFD 587 (1092)
Q Consensus 514 wd~~~~~~~~~~~~-~~~~---i~~~~~s-~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-~~~~~~ 587 (1092)
+|..++........ .... .....+. +++..++..+. +++-..|++++..++.......+ . -.| ..+.++
T Consensus 215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G-~---~~V~~i~~~d 289 (353)
T PF00930_consen 215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSG-D---WEVTSILGWD 289 (353)
T ss_dssp EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-S-S---S-EEEEEEEE
T ss_pred EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccC-c---eeecccceEc
Confidence 67766555443322 1222 2345554 78887777765 67788999999988875433333 2 456 347788
Q ss_pred CCCCEEEE-EeC----CCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 588 TAKDQILA-AGD----DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 588 ~~~~~l~~-~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
++++.++. +.. ...++.-++..+..+..+...... ...+.|||+|++++....
T Consensus 290 ~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 290 EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 88777754 443 235666677634555666544332 148999999999886654
No 320
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=6.1e-07 Score=89.90 Aligned_cols=168 Identities=16% Similarity=0.103 Sum_probs=126.1
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d 417 (1092)
+.++||-+-.-+-++.+.+-.|-+-|+++|-... + ...+.|.++.|...+.++..|..+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccC
Confidence 4447764432223444556789999999885442 1 256789999999999999999999
Q ss_pred CEEEEEEccCCCc--ccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCce---eEEEecCCcCeEEE
Q 001363 418 HIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL 491 (1092)
Q Consensus 418 ~~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~i 491 (1092)
|.|...|+..+.. ...... -.|...|+++.... +++ .|.+.+.+|+|++||.+--++ ++.+.||-..-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 9999999986521 111112 25889999998877 455 788899999999999987666 88899997766666
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 529 (1092)
-++..+....+++++.|...|+|.++.+....++....
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 66666777799999999999999999888776665443
No 321
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.1e-06 Score=86.41 Aligned_cols=258 Identities=15% Similarity=0.086 Sum_probs=175.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-CCcEEEEECC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV 473 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~ 473 (1092)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|-+.|.+++.+-|+. ++.|.+. |..++++|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77788777655 467999999999999998765333333335678999999999999998 7888777 9999999988
Q ss_pred CCceeEEEecCCcCeEEEeecccC-Cc--cEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEccCCCEEEEEe
Q 001363 474 TGSRTYSFEGHGAPVYSLCPHAKE-NI--HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~-~~--~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
+-..+.-++--.-|= .+.|...+ +- .+-++.-.+|.+.++|-....+. ..-..|..+|..+.+++-+..+++.-
T Consensus 85 n~DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred ccchhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 755443222111111 11121111 11 23344456788999987655433 34455778999999999999888764
Q ss_pred cCCCCceeEEEEeCCC------CeEEEEE------eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001363 549 TSKEGESFLVEWNESE------GAIKRTY------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~------~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1092)
..+.|..|.... .+..-.+ -+.........++.|+|++..+.+-+.|..|++++..+|+.++.+
T Consensus 164 ----~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 164 ----ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ----ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 367899998763 1111111 111112356788999999999999999999999999998776544
Q ss_pred eCCC-------------------------------CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001363 617 DAGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 617 ~~~~-------------------------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
.... ....-..++|...|++|+-++-- -|++.++.+++..+.+.
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILG 314 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEec
Confidence 3110 11123457888889999888775 48899999887766554
No 322
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.42 E-value=2.9e-06 Score=81.90 Aligned_cols=208 Identities=15% Similarity=0.176 Sum_probs=124.4
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce-eeEeecc-ccCCeEEEEEcCCCCEEEEEeC-----CCc
Q 001363 837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGG-----DAQ 909 (1092)
Q Consensus 837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~~~V~~l~~spdg~~l~s~s~-----Dg~ 909 (1092)
..+..|..+-.+-+.+- -+.-++++..||.+.+++.+.-. ...+... |.+. .+......++.+.+++. -+.
T Consensus 83 ~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred eeeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccc
Confidence 33433443333334444 46688999999999999877521 1111111 2221 11222234444443321 123
Q ss_pred EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE--EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEe
Q 001363 910 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFS 987 (1092)
Q Consensus 910 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs 987 (1092)
.++|+++..+ ++.........|.+++-.|..+.+++ +.||.+.+||.+.......++..|..+++.+.|.
T Consensus 161 ~~a~~~~p~~--------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FH 232 (319)
T KOG4714|consen 161 FYANTLDPIK--------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFH 232 (319)
T ss_pred eeeecccccc--------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheecc
Confidence 5666666422 11111111124888999998776665 4778999999999988888888999999999999
Q ss_pred c-CCCEEEEEECCCcEEEEEcCCCceEEeec---cccccCCCCccccccc------------eEE-EECCCCCCEEEEEe
Q 001363 988 C-DCRMVFTSFVDGTLSIHEASNLEVQCRIL---STAYLRPTTSCLHVYP------------HAI-AAHPLKPTQFAVGL 1050 (1092)
Q Consensus 988 ~-dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~v~~------------~~~-~~~p~d~~~l~~~~ 1050 (1092)
| ++..|+++++||.+--||..+--+-.... ...|+.. +++++ +++ .|+- -+..|++|+
T Consensus 233 pk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsg----D~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgt 307 (319)
T KOG4714|consen 233 PKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSG----DPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGT 307 (319)
T ss_pred CCCchheeEecCCCcEEEEcCCCceEEecCccccccccccC----CcccceEeeeccccccceeeeeeec-cCceEEecc
Confidence 8 67899999999999999988633221111 1112222 22222 111 1222 256899999
Q ss_pred CCCcEEEEe
Q 001363 1051 TNGEVYVIE 1059 (1092)
Q Consensus 1051 ~dg~v~~w~ 1059 (1092)
+-+.|++.+
T Consensus 308 d~eaIyl~~ 316 (319)
T KOG4714|consen 308 DAEAIYLTR 316 (319)
T ss_pred ccceEEEec
Confidence 999999876
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=3e-05 Score=79.84 Aligned_cols=251 Identities=13% Similarity=0.156 Sum_probs=145.7
Q ss_pred eecCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
++.+|...|..++|||..+ +|..++.+..|+|.|+++...+. .+..| ..+++++|.-|... ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999877 78888999999999999976554 44456 68999999999876 8889999999999
Q ss_pred EECCCCce-eEEEec--CCcCeEEEeeccc----CCccEEEEEecCCeEEEEEcCCCCc--eEEec-CCCCceEEEEEcc
Q 001363 470 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA--RVDYD-APGLGCTRMAYSA 539 (1092)
Q Consensus 470 wd~~~~~~-~~~~~~--~~~~v~~i~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~-~~~~~i~~~~~s~ 539 (1092)
||++..+- +..+.+ ...+|..++..+. +.+.+++..+.+ +..|.+..... ..... ...+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 223322 2234444432211 122344443332 34454432221 12122 2234555666666
Q ss_pred CCCEEEEEecCCCCceeEE----EEeCCCCeEEEEEe----eccc-cCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCC
Q 001363 540 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQ----GLQL-QHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 609 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~ 609 (1092)
-.+.++.....+...-+++ --|-.+|..+..-+ |... ....-..+.-.+++++++. +...+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 5566655544321111111 11222232221111 1000 0001112222345566655 55678899999999
Q ss_pred CceEEEEeCCCCCCCCceEEEcc-C-CCEEEEEeCCCeEEEEECC
Q 001363 610 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP 652 (1092)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iw~~~ 652 (1092)
++.++++.... .|..++... + +.+|++-++ ..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLTD-DRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhheec-ceEEEEecC
Confidence 99999998763 355555443 3 446665554 578887654
No 324
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.41 E-value=7.3e-07 Score=84.45 Aligned_cols=133 Identities=22% Similarity=0.278 Sum_probs=96.9
Q ss_pred HHHHHHHhcCcCHHHHHHHhccCCC-cCCccccchhhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001363 38 MKFFEDMILDGKWEDVEQYLSSFTK-VDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA 116 (1092)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~-~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1092)
...++++|++|+++.|++.++.... +... ...+.|.|++|+|+|+|..++..+|+.+.|+.+.|......+.++.+.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~--~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR--NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc--CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6789999999999999999987522 2111 123889999999999999999999999999999766543456777888
Q ss_pred HhhcccCccc--ccccccccCCChHHHHHHHHHHHhhcccCcccccccCCCCCc-cHHHHHHHHHHHHHH
Q 001363 117 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ 183 (1092)
Q Consensus 117 ~~~~~~~~~~--~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~Ll~qa~~~q 183 (1092)
.+|...+..+ ...+..+.+ ...|+++.+.+.+.+-.... +| .+.|..++++....+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~~--~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELLS--PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHhC--hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 8887766544 222222212 36788888888887655332 44 466888888776554
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.40 E-value=5.5e-06 Score=93.71 Aligned_cols=180 Identities=16% Similarity=0.182 Sum_probs=131.8
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEE
Q 001363 813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1092)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 334455554 677888999988887777655555655555 6789999999999999999999999999999999977
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC--CCEEEEEeCCcEE
Q 001363 892 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD--QTRFLLVHETHLA 960 (1092)
Q Consensus 892 l~~spdg~~l~s~s~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d--g~~la~~~d~~i~ 960 (1092)
+.. .|+.|+++|. |.-|+|||+..-+... +++.+.+ ..-+.|.|. .+..+++..|+..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 655 6899999985 5568999998743222 3333333 234677775 3444457888999
Q ss_pred EEEcC---CceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001363 961 IYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus 961 lwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd 1006 (1092)
+-|.. +...-.......+..+..+++|++|..|+.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88843 22111111223356699999999999999999999999997
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.40 E-value=8.2e-05 Score=87.62 Aligned_cols=282 Identities=11% Similarity=0.161 Sum_probs=159.5
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
.+.|.++.|.-++.. +..+..+|.|.+-|.++..... ...-...|.+++||||++.++.
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 469999999999975 5667788999999988876553 2234578999999999999999
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcc---cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-eEEEecCCcCeE
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVY 489 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~ 489 (1092)
.+..+++.+-+-.- ..+... .+.. ..+....+-|-....+ +.|+ .|....-+...... +....-+ ..=+
T Consensus 127 iT~~~tll~mT~~f-~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~ 199 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKDF-EPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQD-DHKT 199 (1265)
T ss_pred EeCCcEEEEEeccc-cchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhc-cCCc
Confidence 98888776644321 111100 0100 0111222333222211 1111 11111111000000 0000111 1223
Q ss_pred EEeecccCCccEEEEE-----ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 490 SLCPHAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
+++| .+||+++++. ...+.|++||-+ +.....-....+--.+++|-|.|..+++.....+ +..|.++..+
T Consensus 200 ~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN- 274 (1265)
T KOG1920|consen 200 SISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN- 274 (1265)
T ss_pred eEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC-
Confidence 4566 6688888873 233789999876 3333333333344567999999999998776544 5568888754
Q ss_pred CeEEEEEeecc-ccCCceEEEEEcCCCCEEEE---EeCCCcEEEEECCCCceE--EEEeCCCCCCCCceEEEccC-CCEE
Q 001363 565 GAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILA---AGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN-GTLL 637 (1092)
Q Consensus 565 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~---~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~-~~~l 637 (1092)
|-.-..|.-.. .....+..++|+.++..|++ ......|++|-..+.... +.+..... .-+-|+|. ...+
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L 350 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTL 350 (1265)
T ss_pred CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeE
Confidence 33322222111 11134899999999998887 445556999998876543 33332222 22778883 2334
Q ss_pred EEEeCCCeEEEEECC
Q 001363 638 AVIANENRIKILETP 652 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~ 652 (1092)
.+-..+|...+++..
T Consensus 351 ~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 351 HVLRESGQRLVRDFA 365 (1265)
T ss_pred EEEecCCcEEEEEEE
Confidence 444466666665543
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=0.00074 Score=65.76 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=81.3
Q ss_pred ecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEE
Q 001363 342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 421 (1092)
Q Consensus 342 ~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~ 421 (1092)
.-+|.++++..|+..+.+.--|..+|+..-... -...|.+-+.- -|++++.|...|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 345556789999999999999999998775311 11222222221 477899999999999
Q ss_pred EEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 422 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 422 iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+-+.++|+.......+..- .+ .....+++. ++..|+.|++.+.-|..+..+++..+
T Consensus 77 fl~~~tGs~~w~f~~~~~v--k~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILETV--KV-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EEEecchhheeeeeehhhh--cc-ceEEcCCCc--eEEEecCCCcEEEecccccceEEecc
Confidence 9999999766543322211 11 234456777 89999999999999999988887754
No 328
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.39 E-value=6.8e-07 Score=62.40 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=35.3
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEe
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 363 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd 363 (1092)
++++++.+|++.|++++|+|++. ++++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46789999999999999999998 799999999999997
No 329
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=1.3e-06 Score=87.66 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=113.0
Q ss_pred EEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc-----eeeEeeccccCCeEE
Q 001363 817 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-----EVISKLEGHSKRVTG 891 (1092)
Q Consensus 817 l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-----~~~~~l~~h~~~V~~ 891 (1092)
+++|.+-.+-+-|+++|-. +.|. ..+.|.++.|.. .+.++..|+.+|.|..+|++.+ .+...+. |...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 4455577788889887743 3343 567888999987 7889999999999999999874 3555665 9999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCcee
Q 001363 892 LVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC 969 (1092)
Q Consensus 892 l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~ 969 (1092)
+..-. ++++|.+.+.+|+|++||+..-+... -+...+||......+ -+.+.+....+++ |.|-..+||.+..|..
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~V~qYeGHvN~~a~l-~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKK--SVMQYEGHVNLSAYL-PAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhccc--ceeeeeccccccccc-ccccccccceEEEccCeeEEEEEecccCce
Confidence 88776 78899999999999999998743222 477778876532222 2334555555655 7888999999999998
Q ss_pred eeeec
Q 001363 970 LKQWF 974 (1092)
Q Consensus 970 ~~~~~ 974 (1092)
+.+..
T Consensus 381 l~tip 385 (425)
T KOG2695|consen 381 LCTIP 385 (425)
T ss_pred eeccC
Confidence 88754
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.33 E-value=0.00011 Score=81.56 Aligned_cols=138 Identities=10% Similarity=0.071 Sum_probs=100.9
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|.--+++..++ +++.|+.-|.+.+|+-.+|+.+... ..+-.+.+..+..|++..++|.|
T Consensus 34 ~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAag 94 (726)
T KOG3621|consen 34 ARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAAG 94 (726)
T ss_pred ceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhhh
Confidence 3666667778888 6899999999999999888766421 22345567778899999999999
Q ss_pred eCCCEEEEEEccCCCcccceEE---EcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCCcC
Q 001363 415 YSKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHGAP 487 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~ 487 (1092)
+..|.|.++-+..+..-..... -..|...|++++|++|+. .+++|...|+|..-.+.+. ...+.+......
T Consensus 95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~ 172 (726)
T KOG3621|consen 95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE 172 (726)
T ss_pred cCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence 9999999999887433222111 123778999999999999 7999999999999887772 112333334556
Q ss_pred eEEEee
Q 001363 488 VYSLCP 493 (1092)
Q Consensus 488 v~~i~~ 493 (1092)
|..+..
T Consensus 173 IVQlD~ 178 (726)
T KOG3621|consen 173 IVQLDY 178 (726)
T ss_pred eEEeec
Confidence 666654
No 331
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=2.5e-06 Score=86.90 Aligned_cols=173 Identities=17% Similarity=0.266 Sum_probs=119.1
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCC--------hhHHHHHHHhcCcCHHHHHHHhccCC-CcCCccccchhhhH
Q 001363 5 NKDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFE 75 (1092)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~ 75 (1092)
++-+-|+|..||..+||..+|..|-++|.+. .++..++++|++|+...|+.....-+ .+. +..-.+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 3446799999999999999999999999975 23788899999999999988875421 111 112236699
Q ss_pred hHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccC
Q 001363 76 IRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEAN 155 (1092)
Q Consensus 76 i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~ 155 (1092)
++.|.|+||+..+++.+|+.+.++.|.|........++....++.+....+... +.+-....| ++.|+.++..+
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sk---y~~l~~~~r---w~~l~~lF~s~ 266 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSK---YLNLLTADR---WSVLADLFLSE 266 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccc---ccCcccHHH---HHHHHHHhhHH
Confidence 999999999999999999999999999998777788888888888865432221 111112222 23344333322
Q ss_pred cccccccCCCCCccHHHHHHHHHHHHHHHh-cCCC
Q 001363 156 PILQGKLKFPSIKRQRLRRLINQSLNWQHV-HCAN 189 (1092)
Q Consensus 156 ~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~-~c~~ 189 (1092)
.. .-..+|+-| +|.++|+--+..|.- .|..
T Consensus 267 a~--~l~~i~~~~--~L~~~l~~GLsalKTp~c~~ 297 (389)
T KOG0396|consen 267 AL--KLFGIPINP--ALTIYLQAGLSALKTPRCLN 297 (389)
T ss_pred HH--HHhCCCCCc--HHHHHHHhhhhhcccccccc
Confidence 21 112233223 488888877777743 3443
No 332
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.32 E-value=0.00048 Score=76.43 Aligned_cols=303 Identities=12% Similarity=0.100 Sum_probs=155.5
Q ss_pred ccCCCEEEEEecCC-----CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001363 538 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 538 s~dg~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1092)
|||+++++...... +..+.+.++|+.+++....... . ..+....|+|+|+.++... ++.|++++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 57888777643211 1245689999999877665554 2 5788899999999988876 57899999888744
Q ss_pred EEEEeCCCC----------------CCCCceEEEccCCCEEEEEeCC-CeEEEEECC---CCceeeecccccCceeeeee
Q 001363 613 LTTIDAGGG----------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSV 672 (1092)
Q Consensus 613 ~~~~~~~~~----------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~---~~~~~~~~~~~~~~v~~~~~ 672 (1092)
.+ +...+. ...-..+.||||+++|+....| ..+..+.+. .... ....+..+.+
T Consensus 76 ~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~Y 148 (353)
T PF00930_consen 76 TQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRY 148 (353)
T ss_dssp EE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE-
T ss_pred EE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCccccccc
Confidence 43 322220 1223578899999999887553 333333221 1110 0001111111
Q ss_pred cCCCccccccccCCceeecCCCCCCCccceeeccccc--cceeccccccCccccccccC--CccccccEEEEEEecCCcE
Q 001363 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK--SEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQA 748 (1092)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~--i~lw~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~ 748 (1092)
. ..|...-. +.++++..++.. .+..+ .......+..+.|.++++.
T Consensus 149 P----------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 149 P----------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp -----------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred C----------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcE
Confidence 1 11111112 233443322221 11111 0124566889999999984
Q ss_pred EEEeecC---CeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe-cCCCEEEEEe--C
Q 001363 749 IFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--G 822 (1092)
Q Consensus 749 l~~~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s-~dg~~l~~~s--d 822 (1092)
++..-.+ ..+.+.. +|+.++.+.........+--.......+. +++..++..+ +
T Consensus 198 l~~~~~nR~q~~~~l~~--------------------~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLVL--------------------CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp EEEEEEETTSTEEEEEE--------------------EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred EEEEEcccCCCEEEEEE--------------------EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 4444332 2233322 23333332222111111111222355555 7776666665 4
Q ss_pred C--eEEEEEcCCceeeEEecCCCCCeEE-EEEcCCCCCEEEEEeCCC----cEEEEEcCCceeeEeeccccCCeEEEEEc
Q 001363 823 G--VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFS 895 (1092)
Q Consensus 823 g--~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 895 (1092)
| .|.+++...+. ...+....-.|+. +.++++++.+.+++..++ .++.-++.++..+..+....+.-..+.||
T Consensus 258 G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S 336 (353)
T PF00930_consen 258 GYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS 336 (353)
T ss_dssp SSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred CCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence 4 47777777665 3455545556744 678884455555666533 56666666233455555433333689999
Q ss_pred CCCCEEEEE
Q 001363 896 DALNILVSS 904 (1092)
Q Consensus 896 pdg~~l~s~ 904 (1092)
|||++++-.
T Consensus 337 pdg~y~v~~ 345 (353)
T PF00930_consen 337 PDGKYYVDT 345 (353)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 999998754
No 333
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.31 E-value=0.0024 Score=68.12 Aligned_cols=279 Identities=14% Similarity=0.131 Sum_probs=139.2
Q ss_pred EeecCCCceEEEEEcCCCc--EEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-CcEEEEEECCCCCEEEEEeC
Q 001363 340 MDFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYS 416 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~~~ 416 (1092)
=+|.+||++||.++..||. +.+-|+.+++... |+... .......++|+++.++....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 3689999988888877765 6666888887664 33332 22224667899999877766
Q ss_pred CCEEEEEEccCCCcccceEEEcccccceeEEEEe--cCCCcEEEEEEe----------------------CCCcEEEEEC
Q 001363 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDA 472 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s--~d~~~l~l~s~~----------------------~d~~i~vwd~ 472 (1092)
...++--|+.+.+.. . .+......+-...|. .|+. .++..- ..+.|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 678888899887532 2 233344444445553 4555 333221 1234666688
Q ss_pred CCCceeEEEecCCcCeEEEeecccCCccEEEEEec---CCe-EEEEEcCCCCceE-EecC--CCCceEEEEEccCCCEEE
Q 001363 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGK-IKAWLYDSLGARV-DYDA--PGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~-i~vwd~~~~~~~~-~~~~--~~~~i~~~~~s~dg~~l~ 545 (1092)
.+|+....+. -...+..+.|+|... .+|+-|-. +.. -|+|-+++..... .+.. ....+..=-|.|||..+.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 8887654443 556777888877533 34444322 221 3667655433222 2221 222445556899999887
Q ss_pred EEec-CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----------------CcEEEEECC
Q 001363 546 SCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDMN 608 (1092)
Q Consensus 546 ~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~ 608 (1092)
..+. .+..+..|.-+|+.+++....... .......-++|+++++-=+.| ..|++++++
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 6544 334466788899998876543332 234455567888877653322 246778888
Q ss_pred CCceEEEEeCC--------CCCCCCceEEEccCCCEEEEEeC-CCeEEEEE
Q 001363 609 KVQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE 650 (1092)
Q Consensus 609 ~~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~ 650 (1092)
.+......... .....-....|+|||++++..++ .|...||-
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp TTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred cCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 76654322211 00112356899999999887765 56655553
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=7.5e-05 Score=77.03 Aligned_cols=250 Identities=12% Similarity=0.099 Sum_probs=140.7
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
.+.|.+|...|..++|||..+=|+..++.+..|+|.|+++...+.. +..| ..+.+++|.-
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL 245 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence 4577889999999999998875789999999999999999877754 3334 7899999998
Q ss_pred CC-CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEE------ecCCCcEEEEEEeCCCcEEEEECCC--Cce
Q 001363 407 DG-SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIKVWDAVT--GSR 477 (1092)
Q Consensus 407 dg-~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~------s~d~~~l~l~s~~~d~~i~vwd~~~--~~~ 477 (1092)
|. .+|..|...|.|.|||+...+.......-.-...+|..++. .+-|. +++....+ +..|++.- +..
T Consensus 246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence 65 56667778999999999865432211111112234444433 22343 34444333 45665432 111
Q ss_pred eEEEe-cCCcCeEEEeecccCCccEEEEEecCCe---EE---E-EEcCCCCceEE-ecCC-CC------ceEEEEEccCC
Q 001363 478 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK---IK---A-WLYDSLGARVD-YDAP-GL------GCTRMAYSANG 541 (1092)
Q Consensus 478 ~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~---i~---v-wd~~~~~~~~~-~~~~-~~------~i~~~~~s~dg 541 (1092)
...++ +..+...++...+..+ +.|++.-.+.+ ++ . -|...+..+.. -..+ +. .-..+.-.++.
T Consensus 322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 12111 1234445555544322 34444433211 00 0 01111111110 0000 00 01122224566
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 001363 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++++..+. ..+.+.+||+.+++.++++.-.. +|..++... ++.-++..-.|..++||..+
T Consensus 401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence 66665543 46779999999999999887643 666665432 33334444445668887654
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=4.3e-05 Score=85.91 Aligned_cols=188 Identities=12% Similarity=0.123 Sum_probs=129.9
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001363 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 923 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~ 923 (1092)
..++|++++ +++++-|+.+|.|++++... .. .+...|+.. ..+|.+++|||.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456788885 47999999999999999874 33 333446554 56899999999999999999888653332
Q ss_pred eeeecCCCCcCCCCCceEEEEccC-----CCEEEEEeCCcEEEEEcCCc-eeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001363 924 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~l~~s~d-----g~~la~~~d~~i~lwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
.-++ .++.+++++|| .+.+++|+...+.++.-.=. .........-.++|.++.| .|.++|=++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 2222 25889999998 45666654433777764311 1111123334789999998 477888887
Q ss_pred CCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 998 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 998 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.+| |+|||+.++..+..+.+....+. ....+..+.|.+ ...|+.| ...+|++..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 665 89999999999888775442222 234556678886 4566665 66788888887
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00021 Score=81.21 Aligned_cols=206 Identities=15% Similarity=0.170 Sum_probs=132.6
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCceee-
Q 001363 850 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQT- 922 (1092)
Q Consensus 850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s~s~Dg~-----I~iwd~~~~~~~~- 922 (1092)
++++ ++..+|.|+.+|.|.+.+-. -+.+..++++... |+.+-...+..+|++.+.|+. |+||+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 67799999999999887643 3445777777766 555554445579999988765 8999998653333
Q ss_pred eeee---ecCC-CCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcC----CceeeeeeccCCCCCEEEEEEecCCCEE
Q 001363 923 CRSL---QTPD-GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE----ELTCLKQWFPISSVPISQATFSCDCRMV 993 (1092)
Q Consensus 923 ~~~~---~~~~-~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~----~~~~~~~~~~~h~~~v~~l~fs~dg~~l 993 (1092)
..++ +... .......++.+++.|.+-+.+|+| .+|.|..+.-+ .|.... ....-..+|+.++|..|++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~-~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD-YSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee-eeccCCCCceeeEEecCCcee
Confidence 3333 2211 111112468999999999999997 77888888532 111111 111237899999999999874
Q ss_pred EEEECCCcEEEEEcCCCce-EEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCccccC
Q 001363 994 FTSFVDGTLSIHEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus 994 ~t~~~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 1070 (1092)
+.+..-..|.+|.+.+... .+... . ++ +..-|.++++.. ..|++++ +..|.+|+..+.++.|+..
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld------~--~G--~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLD------N--NG--ISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeec------c--CC--ccceeeecCCCC-ccEEEec-CceEEEEcCCCcceeeeec
Confidence 4344456799999984331 21122 1 12 333467787632 2355553 5578999999999888654
No 337
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.13 E-value=5e-05 Score=86.29 Aligned_cols=186 Identities=14% Similarity=0.117 Sum_probs=142.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 536 (1092)
.++.|+....+..+|+.+.+..+...-....|.-++. +++.+.+|...|+|.+-|.++.+.+.++..|.+.+. .
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--D 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--D 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeecccccee--e
Confidence 5788888888999999999888777655555776654 668999999999999999999999999999998885 4
Q ss_pred EccCCCEEEEEecCCC-----CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCC-
Q 001363 537 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK- 609 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~- 609 (1092)
|+-.|+.|++||.+.. .|..|.+||+++.+.+..+.-+. ++ .-+.|.|. ...+++++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence 5667999999987553 35678999999888776666544 22 45667776 35678888899999988432
Q ss_pred Cce-EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 610 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 610 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
+.+ ......+...+.+..++++++|+.++.|..+|.|.+|.-.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 111 1222222223458899999999999999999999999844
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.0004 Score=78.93 Aligned_cols=202 Identities=11% Similarity=0.114 Sum_probs=136.3
Q ss_pred EEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCC-----cEEEEEcCCc----
Q 001363 808 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS---- 876 (1092)
Q Consensus 808 ~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~---- 876 (1092)
-++++.+..++.|+ +|.|.+.+- ..+.++.++.+... |+.+-... +..+|++.+.|+ .++||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888888887 788888774 34555777777766 44444443 557888887776 4899998643
Q ss_pred --eee--Eeecc-----ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC
Q 001363 877 --EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 877 --~~~--~~l~~-----h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
.++ .++.+ ...++.+++.|.+-+.+|.|-.+|.|..+.-+--..+..+..-...+. .+|+.+++..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 223 12222 346788999999999999999999998885432221111222222232 36999999999
Q ss_pred CCE-EEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEee
Q 001363 948 QTR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 948 g~~-la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
++. +.++.-..|.+|.+....+.......|+....|..|++-...+++++ +..+.+|+.+.......|
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 988 44567788999999844433444666788999999887555355554 457999998855544334
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.09 E-value=0.0039 Score=72.41 Aligned_cols=138 Identities=12% Similarity=0.110 Sum_probs=80.2
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCC------ceE--EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGL------GCT--RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------~i~--~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
..++.++.++.+.-.|..+++.......... .+. .+++. ++..++.+.. ++.|+-+|..+|+.+-.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 3567777788888889888887766544322 000 11111 2245555543 567999999999998776
Q ss_pred eecccc--CCceE-EEEEcCCCCEEEEEe---------CCCcEEEEECCCCceEEEEeCCCCCC----------------
Q 001363 572 QGLQLQ--HNSVS-VVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLP---------------- 623 (1092)
Q Consensus 572 ~~~~~~--~~~v~-~~~~~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~---------------- 623 (1092)
...... ...+. ...+. +..++.++ .+|.+..+|..+|+.+..........
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 643300 00011 11122 24555554 36789999999999988775431100
Q ss_pred --CC-ceEEEccCCCEEEEEeCCC
Q 001363 624 --EN-PRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 624 --~v-~~v~~s~~~~~l~~~~~dg 644 (1092)
.+ ...++.+.+.++++++.++
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g 238 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNG 238 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCC
Confidence 01 1345555567777777665
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00032 Score=79.22 Aligned_cols=186 Identities=13% Similarity=0.142 Sum_probs=124.4
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
.+.+.+++ ++.++.|+.+|.+++++.+.... +. + .|... ..+|.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------------~~-~---~~s~~------~~~Ge 84 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------------TN-F---DHSSS------ILEGE 84 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCccc------------------------cc-c---ccccc------ccCCc
Confidence 34444443 46688888999999987654310 00 0 02211 55899
Q ss_pred EEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC----CCCEEEEEeCCCcEEEEEcCCc--eeeEeeccccCC
Q 001363 816 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKR 888 (1092)
Q Consensus 816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~ 888 (1092)
++++++ ||++.|-.+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-.=- +.-..+..-.++
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 999999 6999999998888777665 4578999999993 256888899888 777753321 111234556789
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcC
Q 001363 889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 965 (1092)
Q Consensus 889 V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~ 965 (1092)
|.++.|. |+++|-++.+| |+|||+..+.... .++.+............+.|.++.+ |+.|...+|+|..+.
T Consensus 163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred eEEEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 9999995 88999999888 9999999865433 2222222222112345677766655 566777788888877
No 341
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.09 E-value=0.0008 Score=78.47 Aligned_cols=222 Identities=14% Similarity=0.085 Sum_probs=121.5
Q ss_pred CCeEEEEEcCCCCCEEEEEe------CCC--cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC-CcEEEEE
Q 001363 844 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWD 914 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-g~I~iwd 914 (1092)
..+.+.++|| +++.+|... .|+ .+.+++.. +.......+. ..+.-.|+|||+.|++.+.. ..+++.+
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 777776655 244 45555542 3332223332 37889999999988887543 2233332
Q ss_pred cCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEE---EEcCCceeee----eeccCCCCCEEEEEEe
Q 001363 915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTCLK----QWFPISSVPISQATFS 987 (1092)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~l---wd~~~~~~~~----~~~~~h~~~v~~l~fs 987 (1092)
-..........+..........+.|..+.|||||..+|...+++|++ -....|+... .+..+-...+.++.|.
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 21111000000100000001123699999999999999966788887 4444554111 1122224446889999
Q ss_pred cCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCcc
Q 001363 988 CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus 988 ~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
.+++++ ++..++...+|.+.-.-..........+. .+ ..+++-.| ..+.++..+|.+.+=.-......|
T Consensus 506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~-----~~--v~~vaa~~---~~iyv~~~~g~~~l~~~~~~~~~W 574 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLS-----AP--VVAVAASP---STVYVTDARAVLQLPNSDSGDQYW 574 (591)
T ss_pred cCCEEE-EEecCCCCceEEEecCCccccccCCCCcc-----Cc--eEEEecCC---ceEEEEcCCceEEecCCCCCCCCc
Confidence 999855 55555555566654332221111111111 11 24566665 356677777765555444455678
Q ss_pred ccCCCCCcccCCC
Q 001363 1068 AVLPPDEIVGDQP 1080 (1092)
Q Consensus 1068 ~~~~~~~~~~~~~ 1080 (1092)
...|+..-.+..|
T Consensus 575 ~ev~~l~g~~~~p 587 (591)
T PRK13616 575 REVPGLMGPRAAP 587 (591)
T ss_pred eECccccCCCccc
Confidence 8887776555444
No 342
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.05 E-value=2.5e-06 Score=65.73 Aligned_cols=53 Identities=34% Similarity=0.595 Sum_probs=42.7
Q ss_pred hHHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCH
Q 001363 37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 90 (1092)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~ 90 (1092)
++..++++|+.|+|++|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 478899999999999999999887433222223 48999999999999988764
No 343
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.01 E-value=0.033 Score=64.86 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=43.3
Q ss_pred CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccc
Q 001363 823 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 823 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 885 (1092)
|.+.-+|+.+++..-+.............. .+.+++.++.+|.++.+|.++|+.+...+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 568889999998887765333222222222 3447777888999999999999999887643
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.93 E-value=0.014 Score=66.71 Aligned_cols=252 Identities=14% Similarity=0.084 Sum_probs=137.7
Q ss_pred CceEEeecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.+...++||||++++.+-+..| ++++.|+.+|+.+.. .+ .. ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEE
Confidence 3446789999997665555544 499999999976643 11 11 112239999999988
Q ss_pred EEEeCC-----------CEEEEEEccCCCcccceEEEcccccc--eeEEEEecCCCcEEEEEEeCC--CcEEEEECCCC-
Q 001363 412 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG- 475 (1092)
Q Consensus 412 as~~~d-----------~~i~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~- 475 (1092)
+....+ ..|+.|++.++..-. ...+.+.... ...+..++|++++++.+.+.. ..+.+-|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 776432 247777877654321 1234443333 567889999996333333322 35778888775
Q ss_pred ---ceeEEEecCCcCeE-EEeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccCCCEEE
Q 001363 476 ---SRTYSFEGHGAPVY-SLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 476 ---~~~~~~~~~~~~v~-~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
.....+......+. .+... ++.+++... ..+.|...++..... ...+..+...+.-..+...+.+|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 23344433333333 33321 223443332 235676777777653 224444444333333444566666
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE--Ee--CCCcEEEEECCCCceEE
Q 001363 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLLT 614 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s--~dg~i~iwd~~~~~~~~ 614 (1092)
.... .++...|++++...+.....+.... .+.|..+...++++.+.. .| .-++++.||+.+++...
T Consensus 341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 341 LSYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 5544 2457789999998445544444433 345666665666655543 22 34578888888877643
No 345
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.93 E-value=0.012 Score=62.88 Aligned_cols=229 Identities=12% Similarity=0.063 Sum_probs=112.1
Q ss_pred EEECCCCCEEEEEeC---CCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001363 402 VVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 402 l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
=+|.+||+.|+.++. ...+.+-|+.+++..+ |.... ........+++++ .++-......|+--|+++.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence 367889988887765 4468888888876443 33332 2233567788888 454444456888899999887
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEec----------------------CCeEEEEEcCCCCceEEecCCCCceEEE
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISV----------------------DGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~----------------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 535 (1092)
...+......+-...+....|+..++..-. ...|.-.|+.+++....+. ....+..+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 666666666666666665666666554321 1234445666655444333 44567788
Q ss_pred EEccCCCE-EEEEecCCCCcee-EEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-----CCCcEEEEEC
Q 001363 536 AYSANGRR-LFSCGTSKEGESF-LVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----DDHVIKIWDM 607 (1092)
Q Consensus 536 ~~s~dg~~-l~~~~~~~~~~~~-i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----~dg~i~iwd~ 607 (1092)
.|+|.... |..|.. +..+.. -++|-+. .|...+.+..+. ....+..=.|.|||..+.--+ .+..|.-+|+
T Consensus 194 ~fsP~dp~li~fCHE-Gpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHE-GPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEETTEEEEEEEEE--S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred ccCCCCCCEEEEecc-CCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 99996554 444443 332221 2445433 233333333322 123455567999998776522 3456777888
Q ss_pred CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001363 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
.+++.......+ .....-.++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 887665433322 22345556788877654444
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.93 E-value=0.0029 Score=69.97 Aligned_cols=244 Identities=13% Similarity=0.158 Sum_probs=131.6
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
.|..+.|+++...++++...|.+.+|.+..++........ .-..+.+.+-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~----------------------------~~~~~~~~~~-- 52 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQP----------------------------PDLDYNFRRF-- 52 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------------------------S---
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCC----------------------------cccCcccccc--
Confidence 4788999999889999999999999998775432100000 0000000000
Q ss_pred EEEEEeCCeEEEEEcCC---------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe--ecc
Q 001363 816 YLFSASGGVISLYIVMT---------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG 884 (1092)
Q Consensus 816 ~l~~~sdg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l~~ 884 (1092)
...++.-.+-|+.. ......+....+.|++++.|. =-++|+|..+|.+.|.|++....+.. +..
T Consensus 53 ---~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~ 127 (395)
T PF08596_consen 53 ---SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRE 127 (395)
T ss_dssp ----GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred ---cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccc
Confidence 00000111112111 122333444578999999984 45999999999999999987776544 222
Q ss_pred ------ccCCeEEEEEcC-----CC---CEEEEEeCCCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEE-EccC
Q 001363 885 ------HSKRVTGLVFSD-----AL---NILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQ-FHKD 947 (1092)
Q Consensus 885 ------h~~~V~~l~~sp-----dg---~~l~s~s~Dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~-~s~d 947 (1092)
....|+++.|+. |+ -.|+.|...|.+.+|.+-- +..-..........+. +.|..+. |+.+
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~ 204 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINAD 204 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETT
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECC
Confidence 334688888872 33 4688889999999998752 1111111111111111 2344443 4322
Q ss_pred ---------------------CCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEE-----ecCCCEEEEEECCCc
Q 001363 948 ---------------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATF-----SCDCRMVFTSFVDGT 1001 (1092)
Q Consensus 948 ---------------------g~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~f-----s~dg~~l~t~~~Dg~ 1001 (1092)
..+++++.+..++++...+.+...... ........+++ ...+..|++-..+|.
T Consensus 205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~ 283 (395)
T PF08596_consen 205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS 283 (395)
T ss_dssp T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc
Confidence 125666889999999999888776655 22223334455 236778888899999
Q ss_pred EEEEEcCCCceEEeecc
Q 001363 1002 LSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 1002 i~vwd~~~~~~~~~~~~ 1018 (1092)
|+++.+...+.+.....
T Consensus 284 i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 284 IRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp EEEEETTT--EEEEEE-
T ss_pred EEEEECCCchHhhcccC
Confidence 99999999999988874
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.92 E-value=0.0049 Score=62.99 Aligned_cols=197 Identities=9% Similarity=0.094 Sum_probs=112.5
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+.|.+-.++++.++|.|+.+.|+|+....+.|.-.+. +|+.++... +.+ -+..-.|++..+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~ 75 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGN 75 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-ST
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECC
Confidence 5677777789999999997778999988899988886 477776533 333 357788999988
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccce-----EEEc---ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC---Cc
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQ-----LEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GS 476 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~-----~~~~---~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---~~ 476 (1092)
+.++++--.++.+.++++......... ..+. .+...+-.++|.+.++. |+.+-...-..++.+.. +.
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS
T ss_pred CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCcc
Confidence 888887767899999998543211111 1111 24456899999999884 44444455555655443 22
Q ss_pred eeEEE--------ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CceEEEEEcc
Q 001363 477 RTYSF--------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSA 539 (1092)
Q Consensus 477 ~~~~~--------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~ 539 (1092)
.+... ......+.++++++. .+++++....+..|..+| ..++....+.... .....++|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred ceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 22111 113345778888765 567888888888899998 4444443332222 2467899999
Q ss_pred CCCEEEEE
Q 001363 540 NGRRLFSC 547 (1092)
Q Consensus 540 dg~~l~~~ 547 (1092)
+|+..++.
T Consensus 232 ~G~LYIvs 239 (248)
T PF06977_consen 232 DGNLYIVS 239 (248)
T ss_dssp T--EEEEE
T ss_pred CCCEEEEc
Confidence 99766664
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.92 E-value=0.005 Score=68.08 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=80.0
Q ss_pred ceEEEEccC-CCEEEEE-----eCCc----EEEEEcCCce--eeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001363 939 ETHIQFHKD-QTRFLLV-----HETH----LAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus 939 v~~l~~s~d-g~~la~~-----~d~~----i~lwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd 1006 (1092)
..++.||-. ...+.+. .+|. -.+|+....+ ++..........|.+++++|+...|+.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 467778763 3344331 2332 5677776553 33333345688999999999999999999999999999
Q ss_pred cCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1007 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
...+.....- ..+.|..++||| ++..+++|+..|.+.+||+.
T Consensus 288 ~~~~~t~~~k------------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 288 TTRGVTLLAK------------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCCeeeeee------------ecccceEEEEcC-CCcEEEEEcCCceEEEEEee
Confidence 9887444221 124566799999 58999999999999999974
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.00094 Score=74.55 Aligned_cols=198 Identities=18% Similarity=0.148 Sum_probs=118.4
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCC---CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d---g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
....+.+..-...+..-+|+|+++.+....-.. ..+.++|+++++.....+ -.+.-.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~ 241 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNG 241 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccC
Confidence 344455665566888899999998644442222 359999999988765432 223344
Q ss_pred EEEECCCCCEEEEEe-CCC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc--EEEEECCCC
Q 001363 401 RVVWSPDGSLLGVAY-SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTG 475 (1092)
Q Consensus 401 ~l~~spdg~~las~~-~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~ 475 (1092)
..+|||||++||.+. .|| .|.+.|+.++... .+..-.+.-+.-.|+|||++ ++.+.+..|. |.+.|++.+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~----~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP----RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcce----ecccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence 578999999998774 444 4777788776522 23333333446789999996 3444455554 556676665
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecC-Ce--EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.. ..+......-. ....++||.+++..+.. |. |.+.|+.+... ..............+.++|+.+...+..
T Consensus 317 ~~-~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 317 QV-TRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ce-eEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence 54 33322221111 23336688888777643 44 55556555543 2222222334456788899888876543
No 350
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.91 E-value=0.006 Score=70.83 Aligned_cols=248 Identities=13% Similarity=0.107 Sum_probs=139.9
Q ss_pred EEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CCCEEEEEe---------CCC
Q 001363 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAY---------SKH 418 (1092)
Q Consensus 350 lasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~las~~---------~d~ 418 (1092)
+..++.++.|.-+|.++|+.+-.+... .+...-..+.-+| .+..+++++ .++
T Consensus 113 V~v~~~~g~v~AlD~~TG~~~W~~~~~-----------------~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g 175 (488)
T cd00216 113 VFFGTFDGRLVALDAETGKQVWKFGNN-----------------DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRG 175 (488)
T ss_pred EEEecCCCeEEEEECCCCCEeeeecCC-----------------CCcCcceEecCCCEEECCEEEEeccccccccCCCCc
Confidence 566778899999999999987543221 1100000011111 123444443 357
Q ss_pred EEEEEEccCCCcccceEEEcc----------------cc-cce-eEEEEecCCCcEEEEEEeCCC---------------
Q 001363 419 IVQLYAYHGGSDARQQLEIDA----------------HV-GNV-NDLAFSAPCKQISVITCGDDK--------------- 465 (1092)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~----------------h~-~~v-~~~~~s~d~~~l~l~s~~~d~--------------- 465 (1092)
.+.-.|..+|+.+-....... +. ..| ...++.+.+. .++.++.++
T Consensus 176 ~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 176 ALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred EEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCCCC
Confidence 788889988875542211100 00 011 1234444455 456665454
Q ss_pred ---cEEEEECCCCceeEEEecCCcCeE------EEeecc--cCCc---cEEEEEecCCeEEEEEcCCCCceEEecCCCCc
Q 001363 466 ---TIKVWDAVTGSRTYSFEGHGAPVY------SLCPHA--KENI---HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG 531 (1092)
Q Consensus 466 ---~i~vwd~~~~~~~~~~~~~~~~v~------~i~~~~--~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 531 (1092)
.|.-.|.++|+.+..++.-..... ...+.. .-++ ..++.++.+|.+...|..+++.+.......
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-- 331 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-- 331 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence 799999999999987642111111 001100 0122 267888899999999999998877654321
Q ss_pred eEEEEEccCCCEEEEEecC--------------CCCceeEEEEeCCCCeEEEEEeeccccC-----CceEEEEEcCCCCE
Q 001363 532 CTRMAYSANGRRLFSCGTS--------------KEGESFLVEWNESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQ 592 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~ 592 (1092)
..++.+| ..++..... ...++.+.-.|..+|+.+-......... .+...-.....+..
T Consensus 332 -~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~ 408 (488)
T cd00216 332 -QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNL 408 (488)
T ss_pred -cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCe
Confidence 1123334 333332110 1235678889999998876665431000 01111111124578
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCC
Q 001363 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
+++++.||.++.+|..+|+.+...+....
T Consensus 409 v~~g~~dG~l~ald~~tG~~lW~~~~~~~ 437 (488)
T cd00216 409 VFAGAADGYFRAFDATTGKELWKFRTPSG 437 (488)
T ss_pred EEEECCCCeEEEEECCCCceeeEEECCCC
Confidence 89999999999999999999988876543
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.86 E-value=0.0057 Score=68.39 Aligned_cols=195 Identities=14% Similarity=0.082 Sum_probs=120.6
Q ss_pred EcccccceeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCeEEEeecccCCccE-EEEEecCCeEEE
Q 001363 437 IDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF-IFSISVDGKIKA 513 (1092)
Q Consensus 437 ~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-l~s~~~dg~i~v 513 (1092)
+..-...+..-+|+|+++.+..++-...+ .+.++|+++++....+. ..+.-..-.| ++||+. +++...||...+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~f--spDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAF--SPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccC--CCCCCEEEEEECCCCCccE
Confidence 33344567778999999975444444343 59999999887655443 1122222345 445555 455667777554
Q ss_pred --EEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001363 514 --WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 514 --wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1092)
.|+....... +....+.-..-.|+|||+.++..+ ++.+.-.|++.+...+...+...... .. ..-.|+|||+
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~---~~-~~p~~SpdG~ 338 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGG---GN-SNPVWSPDGD 338 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCC---CC-cCccCCCCCC
Confidence 5666555333 333333334678999999999886 55667789999988776633332222 12 2667999999
Q ss_pred EEEEEeC-CCc--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001363 592 QILAAGD-DHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 592 ~l~~~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
+++..+. +|. |.+.|+.++.....+.... ....-.+.++++.+...+..
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 9988664 344 6667776666544444322 23456777888877765543
No 352
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.86 E-value=2.3e-05 Score=48.19 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHhc
Q 001363 6 KDLVFLILQFLNEEGFTESAHMLERES 32 (1092)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es 32 (1092)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 578999999999999999999999997
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.85 E-value=0.00063 Score=74.90 Aligned_cols=115 Identities=15% Similarity=0.192 Sum_probs=83.3
Q ss_pred CCCeeEEEEecC-CCEEEEEe-----CCe----EEEEEcCCceeeEE---ecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 001363 802 QEAVPCFALSKN-DAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTI 868 (1092)
Q Consensus 802 ~~~v~~~~~s~d-g~~l~~~s-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v 868 (1092)
+....++.||.. ...+.+.. +|. -++|++...+..+. --.....+.+++++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 344567778763 34444332 232 56777765543221 123667899999999 88999999999999
Q ss_pred EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001363 869 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 869 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 919 (1092)
.+||...+... +..+.-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99999876322 22345567889999999999999999999999987643
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.85 E-value=0.0058 Score=62.46 Aligned_cols=216 Identities=12% Similarity=0.104 Sum_probs=116.0
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccc-cCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 001363 837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDV 915 (1092)
Q Consensus 837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~ 915 (1092)
+.+.+-...+..++|.|+++.++++....+.|..++.+ |+.+.++.-. .+..-.|++..++.++++.-.++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34555666799999999557788888888899888874 7877766532 356888999988887777667999999998
Q ss_pred CCCc--eeee--eeeecCCCCcCCCCCceEEEEccCCCEEEEEeC-CcEEEEEcCC---ceeeee-----e--ccCCCCC
Q 001363 916 DGWG--IQTC--RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAEE---LTCLKQ-----W--FPISSVP 980 (1092)
Q Consensus 916 ~~~~--~~~~--~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-~~i~lwd~~~---~~~~~~-----~--~~~h~~~ 980 (1092)
.... .... ..+..... ......+..++|.|.++.|.++.+ .-..||.+.. ...+.. + .......
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 4422 1111 11121111 111135899999998777777543 4466666653 111111 0 1113556
Q ss_pred EEEEEEecC-CCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001363 981 ISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 981 v~~l~fs~d-g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w 1058 (1092)
+++++|.|. |.+++.+.....|..+| ..|+.+..+....-... ....--.+--++++| +| .|...+.-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~g-l~~~~~QpEGIa~d~-~G-~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHG-LSKDIPQPEGIAFDP-DG-NLYIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG--SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccC-cccccCCccEEEECC-CC-CEEEEcCCceEEEe
Confidence 888999885 45666666778898999 66777766653331100 001111245688998 45 45555566666665
No 355
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.83 E-value=2.6e-05 Score=52.28 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001363 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1092)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~ 35 (1092)
.++++.++|+|||...||..|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.74 E-value=0.0067 Score=67.10 Aligned_cols=254 Identities=13% Similarity=0.117 Sum_probs=133.9
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeE------Ee------------eeeeeeccccc------ceeeEee
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------IR------------NFKVWDIGACS------MLFKTAL 391 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~------~~------------~~~~~d~~~~~------~~~~~~~ 391 (1092)
.|+++.|+++.. -||+|...|.|.||.....+.-. .. .-.+-|+.... ......+
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 588999999976 48889999999999875432221 00 12233443211 2233445
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcc------cccceeEEEEec-----CC-CcEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFSA-----PC-KQISVI 459 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s~-----d~-~~l~l~ 459 (1092)
+....++|++++.| |=-++|+|+.+|.+.|.|+.....+.. ..+.. ....|+++.|+- |+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66678999999998 666999999999999999976554432 22333 334688888862 22 224788
Q ss_pred EEeCCCcEEEEECC--C-Ccee----EEEecCCcCeEEEeecccCCc-------------------cEEEEEecCCeEEE
Q 001363 460 TCGDDKTIKVWDAV--T-GSRT----YSFEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA 513 (1092)
Q Consensus 460 s~~~d~~i~vwd~~--~-~~~~----~~~~~~~~~v~~i~~~~~~~~-------------------~~l~s~~~dg~i~v 513 (1092)
.|...|.+.+|.+. . +.-. .....+.++|..+......+| +-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999764 1 2221 112246677766653211111 22455566788999
Q ss_pred EEcCCCCceEEecCCCCceEEEEEc-----cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-cCCceEEEEEc
Q 001363 514 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFD 587 (1092)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s-----~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~ 587 (1092)
+...+.+..............+++- ..+..|++... ++.++++.+..-+.+..+.-... ....+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888777666554332334445553 24555666654 66799999988887776665320 01223344556
Q ss_pred CCCCEEEEE
Q 001363 588 TAKDQILAA 596 (1092)
Q Consensus 588 ~~~~~l~~~ 596 (1092)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666544443
No 357
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.73 E-value=0.023 Score=65.01 Aligned_cols=249 Identities=13% Similarity=0.127 Sum_probs=127.5
Q ss_pred cEEEEEECCCCCEEEEE-eCC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEE-eC--------
Q 001363 398 SVNRVVWSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GD-------- 463 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-~~-------- 463 (1092)
.+...++||||+++|.+ +.. ..++++|+++|+.+.. .+... ....+.|.+|++. ++.+. ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44568899999999977 333 3699999999864432 11111 1223999999985 33333 22
Q ss_pred -CCcEEEEECCCCcee--EEEecCCcCeEEEeecccCCccEEEEEecCC----eEEEEEcCCC----CceEEecCCCCce
Q 001363 464 -DKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSL----GARVDYDAPGLGC 532 (1092)
Q Consensus 464 -d~~i~vwd~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg----~i~vwd~~~~----~~~~~~~~~~~~i 532 (1092)
...|+.|.+.++..- ..+.........+....+.|+++++..+..+ .+.+.++... .....+......+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 224788888877443 4444444443222333356777766544332 3666677664 2223333233333
Q ss_pred EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE---EEEEeeccccCCceEEEEEcCCCCEEEEE-eCCC--cEEEEE
Q 001363 533 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDH--VIKIWD 606 (1092)
Q Consensus 533 ~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg--~i~iwd 606 (1092)
....-.. +..++..+..+...+.|...++..... ...+..+. ....+..+.. .+.+|+.. ..++ .|++++
T Consensus 280 ~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 280 EYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVSL--FKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEEE--ETTEEEEEEEETTEEEEEEEE
T ss_pred EEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEEE--ECCEEEEEEEECCccEEEEEE
Confidence 3322223 443333333444567788888877652 22344333 0113444443 44555553 3343 578899
Q ss_pred CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCce
Q 001363 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS 656 (1092)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~~ 656 (1092)
+..+.....+..... ..|..+...++++.+..... -+++..||+.+++.
T Consensus 356 ~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 356 LDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 984555555554432 22344444455554443322 26777888887754
No 358
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.71 E-value=0.0063 Score=68.24 Aligned_cols=223 Identities=10% Similarity=0.063 Sum_probs=118.3
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+......+..+.++|+|++++++ .+|.-.|+..... +. ...+.-...+|.+.++ +++-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 44455668899999999999995 5666777773321 21 1234556788999665 66666688899974
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
--+.+....+.. ...+..+-. |.+|...+. +.|.+||+.+++.+..+... +|..+.|+++|.+++..+.
T Consensus 96 n~~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-- 164 (443)
T PF04053_consen 96 NFKNEVVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-- 164 (443)
T ss_dssp TTEE-TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred cCccccceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC--
Confidence 223333233332 112333321 455555544 48999999999888877754 4889999999999998873
Q ss_pred CCceeEEEEeCCCC-----------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEeC
Q 001363 552 EGESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDA 618 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~ 618 (1092)
..+++++.... .....+.... ..|.+.+|..+ .++-.+.. .++.+ -.|+. +..+.
T Consensus 165 ---~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~i~~ld- 232 (443)
T PF04053_consen 165 ---DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGIIAHLD- 232 (443)
T ss_dssp ----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEEEEE-S-
T ss_pred ---CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcceEEEcC-
Confidence 23666654332 0222222212 57888888766 44444444 66653 33433 33332
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 619 GGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
..+.-+.+.++.+.+.....++.+..+.+..
T Consensus 233 ----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 ----KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ----S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ----CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2356677788778888888888888887763
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.014 Score=65.35 Aligned_cols=206 Identities=13% Similarity=0.159 Sum_probs=145.2
Q ss_pred eeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC---CCcEEEEEcCCceee
Q 001363 805 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEVI 879 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~---dg~v~iwd~~~~~~~ 879 (1092)
...+++++++..+.... ++.+.+.|..+.+......... ....+++++ +++.+.++.. ++++.+.|..+++..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45678888888555554 5889999988777766654322 667899999 6655555554 689999999999888
Q ss_pred EeeccccCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--eC
Q 001363 880 SKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE 956 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d 956 (1092)
.....-..+ ..++++|+|+.+..+ ..++.|.+.|........ ...............++++|+|.++.+. .+
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 775544344 889999999965554 478999999987744221 1111111111245789999999977763 22
Q ss_pred --CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-CcEEEEEcCCCceEEeec
Q 001363 957 --THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 957 --~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-g~i~vwd~~~~~~~~~~~ 1017 (1092)
+.+...|..++.........-......+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 5899999988887765222211145678999999998887544 889999999988876665
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.68 E-value=0.01 Score=66.56 Aligned_cols=218 Identities=17% Similarity=0.185 Sum_probs=119.2
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe
Q 001363 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 881 (1092)
...+..+.++|+|++++++++|...|+.....+.... +.....+|.+ +++ +|+-...++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 3446789999999999999999999999655554332 3345788988 554 66666688999963333333233
Q ss_pred eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEE
Q 001363 882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI 961 (1092)
Q Consensus 882 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~l 961 (1092)
+... ..+..+-. |.+|...+.+ .|.+||+++++ .++...-. .|..+.||++|.++|...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v~-----~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----LIRRIDVS-----AVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------EEEEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc-----eeeEEecC-----CCcEEEEECCCCEEEEEeCCeEEE
Confidence 3321 22444433 8888877665 79999999865 33333321 378999999999999988888888
Q ss_pred EEcCCc-----------eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceE--EeeccccccCCCCcc
Q 001363 962 YEAEEL-----------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ--CRILSTAYLRPTTSC 1028 (1092)
Q Consensus 962 wd~~~~-----------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~ 1028 (1092)
++.... ..+.. ...-...|.+.+|-.| -++.|. .. .++. +.+|+.- +.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~-~~E~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld----------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFEL-IHEISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAHLD----------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEE-EEEE-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S-----------
T ss_pred EEecchhcccccccCchhceEE-EEEecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcC-----------
Confidence 876533 01221 1111568889999877 444444 33 7776 4445432 2222
Q ss_pred ccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1029 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1029 ~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.+++. +.+.|. .+.+.....|+.|..+.+.
T Consensus 233 ~~~yl--lgy~~~-~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 233 KPLYL--LGYLPK-ENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp S--EE--EEEETT-TTEEEEE-TT--EEEEE--
T ss_pred CceEE--EEEEcc-CCEEEEEECCCCEEEEEEC
Confidence 22342 344442 4688888899988888764
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.66 E-value=0.03 Score=63.03 Aligned_cols=199 Identities=16% Similarity=0.156 Sum_probs=109.6
Q ss_pred EEEecCCCEEEEEeCC------------eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC
Q 001363 808 FALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 808 ~~~s~dg~~l~~~sdg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
++.+|.|..+|...+. .|+||+.. |+.+..+.-..+.+.++.|+. +. .|++...||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 4556666666666544 58899875 556665543348999999997 44 555677899999999873
Q ss_pred ce------eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee-eeeee-ecCCCCc--CCCCCceE-EEE
Q 001363 876 SE------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-TCRSL-QTPDGVM--TLAPSETH-IQF 944 (1092)
Q Consensus 876 ~~------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~-~~~~~-~~~~~~~--~~~~~v~~-l~~ 944 (1092)
.. .+....-....+....+..+|-.+.+ .++.+.+- ...... ..+.+ ..+.... ........ ..+
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccceEe
Confidence 22 11111112222333344445533333 34433333 221111 00111 1111000 00001111 335
Q ss_pred ccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 945 HKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 945 s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
+.+....+. ..++.+.+.+....+. . ...+++..++.||+|++||.-..+|.+.+.+.+-.+..+.+..
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 555554444 4555666454332211 1 1246899999999999999999999999998877777776663
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.65 E-value=0.015 Score=58.05 Aligned_cols=232 Identities=15% Similarity=0.082 Sum_probs=137.6
Q ss_pred EEEEecCCC-EEEEEe-CCe-EEEEEcCCceeeEEecCCCCC--eEEEEEcCCCCCEEEEEeCC-----CcEEEEEcCCc
Q 001363 807 CFALSKNDA-YLFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARSS 876 (1092)
Q Consensus 807 ~~~~s~dg~-~l~~~s-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~ 876 (1092)
.++++|.-. -++.+- -|+ ..++|..+.+.+.++....+. --.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 567777643 344444 355 778999888777665443321 22346999 89988865443 68999999864
Q ss_pred -eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEE--------------------EEcCCCceeeeeeeecCCCCcCC
Q 001363 877 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV--------------------WDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 877 -~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i--------------------wd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
+.+..+..|.-.-..+.+.+||+.|+.+. |-|.. -|-.++.......+.....+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~--- 225 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ--- 225 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh---
Confidence 56778888888888999999999998763 32333 33233322211111111111
Q ss_pred CCCceEEEEccCCCEEEEE-e-----CCcEEEEEcCCceeeeeecc------CCCCCEEEEEEecCCCEEEEEE-CCCcE
Q 001363 936 APSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDGTL 1002 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~-~-----d~~i~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~-~Dg~i 1002 (1092)
..|..++.-+||+.++.+ . |--..+=-...++.+.-+-. .-...|-+++..-+..+++..+ ..++.
T Consensus 226 -lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 -LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred -cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 258889999999887763 1 11111111122222221110 1144566777766555555444 55678
Q ss_pred EEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1003 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1003 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
.+||..+|.++....... . .-++.. ..-|++.+.+|.++++.-
T Consensus 305 vi~da~tG~vv~~a~l~d----a--------aGva~~---~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 305 VIWDAATGAVVSEAALPD----A--------AGVAAA---KGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEEEcCCCcEEecccccc----c--------ccceec---cCceEEecCCceEEeccc
Confidence 899999999884443111 1 112222 356888889999998854
No 363
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.65 E-value=0.09 Score=61.30 Aligned_cols=197 Identities=16% Similarity=0.085 Sum_probs=115.4
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEccccc--ce-------eEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NV-------NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v-------~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
+..|++++.++.|.-.|..+|+.+-+.. ...... .+ ..+++. ++ .++.++.|+.+...|.++|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~-~~~~~~~~~~~~~~~~~rg~av~-~~---~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYD-PKLPDDVIPVMCCDVVNRGVALY-DG---KVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEec-CCCCcccccccccccccccceEE-CC---EEEEEcCCCEEEEEECCCCCEE
Confidence 4566666677778888888886543221 111100 00 012222 23 3667788999999999999998
Q ss_pred EEEecC--Cc--CeEE-EeecccCCccEEEEEe------cCCeEEEEEcCCCCceEEecCCCC-----------------
Q 001363 479 YSFEGH--GA--PVYS-LCPHAKENIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGL----------------- 530 (1092)
Q Consensus 479 ~~~~~~--~~--~v~~-i~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~----------------- 530 (1092)
...... .. .+.+ -.+ . ++ .++.+. .+|.|..+|.++++.+..+.....
T Consensus 144 W~~~~~~~~~~~~~tssP~v--~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~ 219 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLV--V-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG 219 (527)
T ss_pred eecccccccccccccCCcEE--E-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence 766421 11 1111 011 1 33 444443 268899999988877665332110
Q ss_pred --------------ce-EEEEEccCCCEEEEEecC--------CCCc----eeEEEEeCCCCeEEEEEeeccc--c----
Q 001363 531 --------------GC-TRMAYSANGRRLFSCGTS--------KEGE----SFLVEWNESEGAIKRTYQGLQL--Q---- 577 (1092)
Q Consensus 531 --------------~i-~~~~~s~dg~~l~~~~~~--------~~~~----~~i~iwd~~~~~~~~~~~~~~~--~---- 577 (1092)
.+ ..+++.+...+++.+..+ +.++ ..|.-.|++||+..-.++.... .
T Consensus 220 ~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~ 299 (527)
T TIGR03075 220 AKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDG 299 (527)
T ss_pred cCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccC
Confidence 11 134666766677666532 1122 3688889999999877765330 0
Q ss_pred CCceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceE
Q 001363 578 HNSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQLL 613 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~---~l~~~s~dg~i~iwd~~~~~~~ 613 (1092)
.....-+.+..+|+ .++.++.+|.+++.|..+|+.+
T Consensus 300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 01122233334665 6778999999999999999886
No 364
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.0004 Score=77.32 Aligned_cols=208 Identities=16% Similarity=0.096 Sum_probs=127.3
Q ss_pred CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001363 801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
+...+.--+++..+++++.|++ |.+++|+-..++....-. +..+.+..+.+|+ +..++|.|+..|.|.++-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 4556666678889999999985 999999987776543332 3445566777888 888999999999999998876432
Q ss_pred -----eEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEE
Q 001363 879 -----ISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1092)
Q Consensus 879 -----~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 952 (1092)
+..+. .|...|++++|++|+..+.+|...|.|..-.++....... ..+.... ....|..+.... .+|+
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~-~~q~il~---~ds~IVQlD~~q--~~LL 184 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLS-KSQEILS---EDSEIVQLDYLQ--SYLL 184 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcc-ccceeec---cCcceEEeeccc--ceeh
Confidence 12222 3788999999999999999999999999988887211110 1111111 112355554433 3333
Q ss_pred EEeCCcEEEEEcCCce--eeeeeccCCCCCEEEEEEecC----CCEEEEEECCCcEEEEEcC-CCceEEeec
Q 001363 953 LVHETHLAIYEAEELT--CLKQWFPISSVPISQATFSCD----CRMVFTSFVDGTLSIHEAS-NLEVQCRIL 1017 (1092)
Q Consensus 953 ~~~d~~i~lwd~~~~~--~~~~~~~~h~~~v~~l~fs~d----g~~l~t~~~Dg~i~vwd~~-~~~~~~~~~ 1017 (1092)
++.--.-.+++++... .+.... ..+-.-...+|-|. .+-.+.++.-| .|+|.++ .|++..+..
T Consensus 185 VStl~r~~Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thq 254 (726)
T KOG3621|consen 185 VSTLTRCILCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQ 254 (726)
T ss_pred HhhhhhhheeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeee
Confidence 3322333444444332 121100 00111345566554 33445566665 6999876 456655443
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.60 E-value=0.056 Score=60.88 Aligned_cols=230 Identities=12% Similarity=0.079 Sum_probs=111.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc--c-cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE-C
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--A-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD-A 472 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd-~ 472 (1092)
+.|.++.|+.+.+ |++...||.++++|+..... + .......-....+.+..+..+|- .++++ ++.+.+-+ .
T Consensus 81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence 7999999998654 45566999999999874320 0 00001111122233334444453 33433 34444433 2
Q ss_pred CCCceeEEE---ecCCc------CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001363 473 VTGSRTYSF---EGHGA------PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 473 ~~~~~~~~~---~~~~~------~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
......+.+ ..... ....+ .....+....+....++.+.+.+-..... ....+++..+++||+|++
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~ 230 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKF 230 (410)
T ss_pred cccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCE
Confidence 211111111 11000 00000 01122334445555555555443222111 112458999999999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
++.... ++.+.+....-.+....+.... ......+.|..+...++.- ...+.+.....
T Consensus 231 iAl~t~----~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~-------------- 288 (410)
T PF04841_consen 231 IALFTD----SGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGNDAVVLSW--EDELLLVGPDG-------------- 288 (410)
T ss_pred EEEEEC----CCCEEEEECcccceeEEeecCc--CCCCcEEEEECCCcEEEEe--CCEEEEECCCC--------------
Confidence 998865 4557777765555555554432 2455666666543222221 22233332111
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
..+.|.-++..++..-.|| ++|.....-..++...
T Consensus 289 --~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 289 --DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP 323 (410)
T ss_pred --CceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence 2244444454444444455 7777666555555544
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.59 E-value=0.0037 Score=73.00 Aligned_cols=183 Identities=9% Similarity=0.067 Sum_probs=105.2
Q ss_pred CCeeEEEEecCCCEEEEEe-------CC--eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC--------
Q 001363 803 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------- 865 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-------- 865 (1092)
..+.+.++||||+.++... +. .+.+++.. +.. ..+.. ....+.-.|+| |+..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3567899999999988765 33 35555642 222 33322 22478899999 77777766432
Q ss_pred ----CcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEE---EEcCCCceeeeeeeecCCCCcCCCCC
Q 001363 866 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS 938 (1092)
Q Consensus 866 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1092)
+.+.+.++..++... ...+.|..+.|||||+.+|... ++.|.+ -....|+...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444443322 2356799999999999998876 477777 444444422211211211111 23
Q ss_pred ceEEEEccCCCEEEEEeCCc--EEEEEcCCceeeeeeccC--CCCCEEEEEEecCCCEEEEEECCC
Q 001363 939 ETHIQFHKDQTRFLLVHETH--LAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 939 v~~l~~s~dg~~la~~~d~~--i~lwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg 1000 (1092)
+.++.|..++.+++...++. +...++. |..... ..+ ...++..++-+++ .|+....+|
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecC-Cccccc-cCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 57899999999765544443 4444444 222221 122 2567777777653 355555566
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.2 Score=56.10 Aligned_cols=251 Identities=13% Similarity=0.119 Sum_probs=161.9
Q ss_pred cEEEEEECCCCCEEEEEeCCC-EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001363 398 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
....++..|+|..+....... .+..-+..... ... ....-...-..++.++++.. .++....++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~-~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT-VTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccce-eee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 556688889886665553222 34444444211 111 11111133456788888886 55666667899999988888
Q ss_pred eeEEEecCCcCeEEEeecccCCccEEEEEec---CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001363 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
..+....-. ....+++.+ ++..+..+.. ++++.+.|-.+............+ ..++++|+|..++.+. ..
T Consensus 108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~---~~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN---SD 180 (381)
T ss_pred eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe---cC
Confidence 777664333 444566644 5555555444 688888888877776664333334 8899999999888776 24
Q ss_pred ceeEEEEeCCCCeEEEEEeec--cccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001363 554 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
++.|.+.|..+....+ -... .........+.++|+++.+++.... +.+...|..++............ ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 7789999977766653 1100 1112345678899999987775433 58999999998877763222222 35678
Q ss_pred EEccCCCEEEEEeCC-CeEEEEECCCCceeeecc
Q 001363 629 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG 661 (1092)
Q Consensus 629 ~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~ 661 (1092)
.++|+|+.+.+.... +.+.+.|..+........
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 999999999888554 888888888776555443
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.48 E-value=0.064 Score=53.68 Aligned_cols=256 Identities=16% Similarity=0.169 Sum_probs=139.2
Q ss_pred ceEEEEEcCCCCE-EEEEeCCCc-EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECC
Q 001363 580 SVSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETP 652 (1092)
Q Consensus 580 ~v~~~~~~~~~~~-l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~ 652 (1092)
.-..++++|.... ++.+-.-|+ ..++|....+...++.........-.-+|||||.+|...-+| |.|-|||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 3445778887544 344555554 578999998887777654332223346799999999876544 677788776
Q ss_pred CC-ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCc
Q 001363 653 ES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 731 (1092)
Q Consensus 653 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~ 731 (1092)
.+ +.+..+..
T Consensus 149 ~~fqrvgE~~t--------------------------------------------------------------------- 159 (366)
T COG3490 149 EGFQRVGEFST--------------------------------------------------------------------- 159 (366)
T ss_pred cccceeccccc---------------------------------------------------------------------
Confidence 43 11111111
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEE-eecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001363 732 VKANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
|.-....+.+.+||+.++.+.. -|..- ++...+...+ .-...+.+.+..+|..+....++..-+...+..++.
T Consensus 160 -~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld---sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~ 233 (366)
T COG3490 160 -HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD---SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI 233 (366)
T ss_pred -CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh---hcCccEEEEeccccchhhhccCchhhhhcceeeeee
Confidence 2222334566677775554432 12221 1111110000 001123345556666565656654446778899999
Q ss_pred ecCCCEEEEEe-CC----e-EEEEEcCCceeeEEecCC-------CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce
Q 001363 811 SKNDAYLFSAS-GG----V-ISLYIVMTFKTILTIMPP-------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 811 s~dg~~l~~~s-dg----~-i~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
.+||..++.+- .| . --+=-...++.+.-+.-. ...|-+++.+.+++-..+|.-..+...+||..+|.
T Consensus 234 g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 234 GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 99998877663 11 1 111112234444333322 24677888887455555555555678899999998
Q ss_pred eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 878 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 878 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd 914 (1092)
++..-.-- ....++ +...-++..+.+|.+.++.
T Consensus 314 vv~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 314 VVSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEeccccc--ccccce--eccCceEEecCCceEEecc
Confidence 76543211 111122 2344455566778787773
No 369
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.43 E-value=0.0083 Score=70.93 Aligned_cols=147 Identities=12% Similarity=0.127 Sum_probs=102.9
Q ss_pred CCCEEEEE-eCCCcEEEEEcCCceeeEeeccccCC-eEEEEEcCCC-------CEEEEEeCCCcEEEEEcCCCceeeeee
Q 001363 855 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDAL-------NILVSSGGDAQIFVWDVDGWGIQTCRS 925 (1092)
Q Consensus 855 d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg-------~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 925 (1092)
+.++|+.- .....|+-.|+..|+.+..+..|... |..+ .|+. ..-+.|=.+..+..||..-.. .++
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 55555543 34578999999999999999987754 5544 4432 233446667779999987532 112
Q ss_pred eecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 001363 926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
+.............++++-+.+|.+.+.+.+|.|++||- .|+.-.+.+++-+.+|.+|..+.||+||++.+ +..+.++
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 221111112223578888888998877789999999995 45555666777789999999999999998665 6678888
Q ss_pred EcC
Q 001363 1006 EAS 1008 (1092)
Q Consensus 1006 d~~ 1008 (1092)
++.
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 863
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.41 E-value=0.13 Score=55.05 Aligned_cols=231 Identities=11% Similarity=0.125 Sum_probs=130.9
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE----
Q 001363 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---- 481 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---- 481 (1092)
..++.|+.|+.+| +.+++......... . .+...|..+...++-+ .++.-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3578999999999 89999933222221 1 2333499999999887 344443 599999998754433311
Q ss_pred ----------ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC-----CceEEecCCCCceEEEEEccCCCEEEE
Q 001363 482 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 482 ----------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
......+...+......+...+.....++|.+|.+... ....++... ..+..++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 11223344444112233344455555669998888763 222333333 567788888 556666
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccc---------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--E
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T 615 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~ 615 (1092)
+.. ....+.|+.++.....+..... ...++..+.. +++.++++- +..-.+.|. .|+... .
T Consensus 154 ~~~-----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTS-----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeC-----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 653 2378889887776554432210 0123333333 345555543 222233343 444332 3
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccc
Q 001363 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
+.-.. ....+++. ..++++.+. +.|.||++.+++.++.+..
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 33222 24556653 457776665 5699999999988887764
No 371
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.39 E-value=0.00012 Score=80.27 Aligned_cols=203 Identities=13% Similarity=0.103 Sum_probs=129.4
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCC
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
.+.+++.....+..+++.|..+|.|-+-.++..... .....+...+++++|++ |.+.|+++-..-+.+..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 344555444445567888999999998877654432 33445566889999988 566777776555567789999998
Q ss_pred CC--eEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCCCceEEEcc-CCCEE
Q 001363 564 EG--AIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK-NGTLL 637 (1092)
Q Consensus 564 ~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~l 637 (1092)
++ .+.. .+.+. ......+++|..+.+.+++|.....+.++|++- ......+. +..+..+..+| .++++
T Consensus 138 s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence 87 2221 22221 124556888988889999999988999999872 22222221 12356778888 77777
Q ss_pred EEEeCCCeEEEEECC-CC-ceeeeccccc----CceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001363 638 AVIANENRIKILETP-ES-NSVDAAGVLS----DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~-~~-~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1092)
++-. ||.|.+||.. .- .++..+.... ..+..++++|..+ |...+.....++|+
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------------glla~l~RdS~tIr 270 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------------GLLAVLSRDSITIR 270 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------------chhhhhccCcceEE
Confidence 7665 8999999943 21 2222222222 2478888887643 33333334456788
Q ss_pred eeccc
Q 001363 712 VEKPL 716 (1092)
Q Consensus 712 lw~~~ 716 (1092)
++++.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 88754
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.38 E-value=0.15 Score=54.60 Aligned_cols=228 Identities=14% Similarity=0.074 Sum_probs=128.6
Q ss_pred CCceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Q 001363 345 VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 423 (1092)
Q Consensus 345 dg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iw 423 (1092)
.++ .|+.|+.+| +.+++... ...... .+..+|..+...|+-+.|++-+ |+.+.++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i---------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRI---------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVY 61 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccceeE---------------------eecceEEEEEEecccCEEEEEc-CCccEEE
Confidence 345 477888877 99999832 222211 1334499999999888777764 4889999
Q ss_pred EccCCCcccceEE-----------EcccccceeEEE--EecCCCcEEEEEEeCCCcEEEEECCCC-----ceeEEEecCC
Q 001363 424 AYHGGSDARQQLE-----------IDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHG 485 (1092)
Q Consensus 424 d~~~~~~~~~~~~-----------~~~h~~~v~~~~--~s~d~~~l~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~ 485 (1092)
++..-........ -......+...+ -...+.. .|+.+ ..+.|.+|.+... +..+++. ..
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp 138 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LP 138 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEE-ECCEEEEEEEECCcccccceeEEEE-cC
Confidence 9876443321100 001222344444 1123332 44444 3558888877653 3455554 44
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC------------CceEEEEEccCCCEEEEEecCCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------------LGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
..+.+++|. +..++.|..+ ...+.|+.++.......... .++..+. -+++.+|++..
T Consensus 139 ~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~~----- 207 (275)
T PF00780_consen 139 DPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCYD----- 207 (275)
T ss_pred CCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEec-----
Confidence 778888885 2456666644 46778888665544332111 1222222 34456665532
Q ss_pred ceeEEEEeCCCCeEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 554 ESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
. +-++=-..|+..+ .+.- . ..+..+++. ..++++.+. +.|.||++.++++++.+..+
T Consensus 208 -~-~g~fv~~~G~~~r~~~i~W-~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 -N-IGVFVNKNGEPSRKSTIQW-S---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred -c-eEEEEcCCCCcCcccEEEc-C---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 1 3333233454443 2221 1 344555553 357777666 45999999999999998754
No 373
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.34 E-value=0.69 Score=55.99 Aligned_cols=205 Identities=13% Similarity=0.145 Sum_probs=120.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcC--------eEEEeeccc--------------CCccEEEEEecCCeEEEE
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHAK--------------ENIHFIFSISVDGKIKAW 514 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------v~~i~~~~~--------------~~~~~l~s~~~dg~i~vw 514 (1092)
.++.++.++.|.-.|.++|+.+.++...... ...+++... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666777888888899999888776532211 112222211 133478889999999999
Q ss_pred EcCCCCceEEecCCCC------------ceEEEEEcc--CCCEEEEEecCCC------CceeEEEEeCCCCeEEEEEeec
Q 001363 515 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 515 d~~~~~~~~~~~~~~~------------~i~~~~~s~--dg~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
|.++++....+..... ....+.-+| .+..++.++...+ ..+.|+-+|..+|+.+-.+..-
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9998888765532111 000111112 1334555543222 2678999999999988776531
Q ss_pred cc--------------cCCce-EEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceEEEEeCCCC
Q 001363 575 QL--------------QHNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 575 ~~--------------~~~~v-~~~~~~~~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
.. ....+ ...++.++...++.+. ..+.|.-.|.++|+....++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 10 00011 2345555555555422 224566778889988877754211
Q ss_pred C-------CCCceEEEcc-CCC---EEEEEeCCCeEEEEECCCCceeeecc
Q 001363 622 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 622 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
. ....-+.+.. +|+ .++.++.+|.+.++|..+++.+....
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 0 0111122322 553 78999999999999999998776544
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.071 Score=56.79 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=115.1
Q ss_pred EEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec--
Q 001363 808 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-- 883 (1092)
Q Consensus 808 ~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-- 883 (1092)
..|.++...|.... .+.|.-|+..+++. ..+..+......+.+.. ++ .|+++. . -+.+++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~-~g-~Lv~~~-~-g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDA-GG-RLIACE-H-GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecC-CC-eEEEEc-c-ccEEEeccCCceeEEeccc
Confidence 35667777666665 68899999876643 23332322233334443 34 444332 3 36677776655422221
Q ss_pred --c-ccCCeEEEEEcCCCCEEEEEeC-----C----CcEEEEEcC-CCceeeeeeeecCCCCcCCCCCceEEEEccCCCE
Q 001363 884 --G-HSKRVTGLVFSDALNILVSSGG-----D----AQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1092)
Q Consensus 884 --~-h~~~V~~l~~spdg~~l~s~s~-----D----g~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 950 (1092)
+ -......+...|+|.+.++... . ..=.||.+. .+. ..+....+.. .-..++||||++.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~~---~~NGla~SpDg~t 176 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDLT---IPNGLAFSPDGKT 176 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcEE---ecCceEECCCCCE
Confidence 1 1234556788899988876544 0 112455555 222 1122222111 2467999999988
Q ss_pred EEEE--eCCcEEEEEcCC--ce----eeeeeccCCCCCEEEEEEecCCCEEEEEECCC-cEEEEEcCCCceEEeecccc
Q 001363 951 FLLV--HETHLAIYEAEE--LT----CLKQWFPISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 951 la~~--~d~~i~lwd~~~--~~----~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg-~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
+..+ ..+.|.-|++.. +. ........+.+....++...+|.+.+++..+| .|.+|+.+ |+++..+....
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence 7774 447788887752 21 11122223457777888888998876554444 89999999 99998887443
No 375
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.061 Score=57.26 Aligned_cols=223 Identities=15% Similarity=0.090 Sum_probs=135.0
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
-.|.|+...++.+--..+.|.-|+..+|+... +. +...+.++..-.++..|+++. .+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~g- 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-HG- 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-cc-
Confidence 45778887777777778999999998775442 11 333445555444555555543 33
Q ss_pred EEEEEccCCCcccceEEEc-c-cccceeEEEEecCCCcEEEEEEeCC----------CcEEEEECC-CCceeEEEecCCc
Q 001363 420 VQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGDD----------KTIKVWDAV-TGSRTYSFEGHGA 486 (1092)
Q Consensus 420 i~iwd~~~~~~~~~~~~~~-~-h~~~v~~~~~s~d~~~l~l~s~~~d----------~~i~vwd~~-~~~~~~~~~~~~~ 486 (1092)
+.+++.+++.......... + -....+.+...|+|. +.+ +... ..-.+|-+. .+..++.+..+-.
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~ 163 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT 163 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence 6777876655422221111 1 124567888999998 333 3322 112344444 5666666666666
Q ss_pred CeEEEeecccCCccEEEEE-ecCCeEEEEEcCC-----CCc--eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 487 PVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDS-----LGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~-~~dg~i~vwd~~~-----~~~--~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
.-+.++|+| |++.++.+ +..+.|.-|++.. ... ........+..-.++...+|.+-+++... ...|.
T Consensus 164 ~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v~ 238 (307)
T COG3386 164 IPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRVV 238 (307)
T ss_pred ecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceEE
Confidence 678899965 55555555 4458888887763 111 12233334556678888888877644321 23699
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEe
Q 001363 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG 597 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s 597 (1092)
.|+.. |+.+..+.... ..+.+++|. |+.+.|++.+
T Consensus 239 ~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 239 RFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEe
Confidence 99998 99988888775 566777774 4556665554
No 376
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.31 E-value=9.1e-05 Score=81.03 Aligned_cols=203 Identities=12% Similarity=0.172 Sum_probs=127.6
Q ss_pred CCCceEEeecCCCc-eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CCCEE
Q 001363 334 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1092)
Q Consensus 334 ~~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l 411 (1092)
+..+.|++++-+.+ -++++|..+|.|.+-.+....-. ...+..+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 44788888765543 58999999999998876543211 0112557888999999999 77788
Q ss_pred EEEe----CCCEEEEEEccCC--CcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEec
Q 001363 412 GVAY----SKHIVQLYAYHGG--SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG 483 (1092)
Q Consensus 412 as~~----~d~~i~iwd~~~~--~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~ 483 (1092)
|.|- .|..+.|||+.++ ...... .+. +......+++|..|.+ ++.+|.....+.++|++..- ....+
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 8873 3567999999987 222111 122 2334566889988877 78888888899999976321 11111
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEE-cCCCCceEE-ecCC----CCceEEEEEccCCCE-EEEEecCCCCcee
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARVD-YDAP----GLGCTRMAYSANGRR-LFSCGTSKEGESF 556 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~-~~~~----~~~i~~~~~s~dg~~-l~~~~~~~~~~~~ 556 (1092)
.+..+..+.+.|- .+.++++-. ||.|-+|| ...-+.... +... ...+..++|.|-..- ++++.. ..++
T Consensus 194 nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~t 268 (783)
T KOG1008|consen 194 NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSIT 268 (783)
T ss_pred hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---Ccce
Confidence 2233444455442 224665554 99999999 433332221 1111 124788999996543 444432 2677
Q ss_pred EEEEeCC
Q 001363 557 LVEWNES 563 (1092)
Q Consensus 557 i~iwd~~ 563 (1092)
|+++|+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 8998875
No 377
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.16 E-value=0.025 Score=61.98 Aligned_cols=214 Identities=11% Similarity=0.118 Sum_probs=116.8
Q ss_pred ccccCCCCCceeeecCCCCCCCCCeeEEEEecC----CCEEEEEe----------C-CeEEEEEcCCc----eeeEEe--
Q 001363 781 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN----DAYLFSAS----------G-GVISLYIVMTF----KTILTI-- 839 (1092)
Q Consensus 781 ~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d----g~~l~~~s----------d-g~i~iwd~~~~----~~~~~~-- 839 (1092)
++.|+.+...+....+...++...+..+.+..+ ..++++|. . |.+.++++... ..+..+
T Consensus 5 ~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~ 84 (321)
T PF03178_consen 5 RLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS 84 (321)
T ss_dssp EEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE
T ss_pred EEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE
Confidence 344455555455555543222222333344432 56777774 1 77999999884 122211
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce-eeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
....++|++++--. ++ |+++. .+.|.+|++...+ ....-.- ....++++.. .+++++.|...+.+.++.++.
T Consensus 85 ~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 85 TEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEET
T ss_pred EeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEc
Confidence 22467888888763 44 44444 4789999998877 4333221 2224555554 466999999888899886664
Q ss_pred CceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCC-------ce-eeeeeccCC-CCCEEEE---
Q 001363 918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA--- 984 (1092)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~-------~~-~~~~~~~~h-~~~v~~l--- 984 (1092)
.... ...+..-... ..++++.|-+|++.++++ .+|.+.++.... +. .+.....-| ...|+++
T Consensus 159 ~~~~-l~~va~d~~~----~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 159 ENNK-LILVARDYQP----RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp TTE--EEEEEEESS-----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred cCCE-EEEEEecCCC----ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 2211 1122221111 258899998776655554 668899988762 11 222212222 6677777
Q ss_pred EEec--CCC------EEEEEECCCcEEEE
Q 001363 985 TFSC--DCR------MVFTSFVDGTLSIH 1005 (1092)
Q Consensus 985 ~fs~--dg~------~l~t~~~Dg~i~vw 1005 (1092)
.+.| .+. .++.++.+|.|.+.
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4445 222 47778899998844
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.10 E-value=0.17 Score=55.55 Aligned_cols=175 Identities=11% Similarity=0.042 Sum_probs=103.9
Q ss_pred CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE---EEEECCC----CCEEEEEeC---------C-CE
Q 001363 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN---RVVWSPD----GSLLGVAYS---------K-HI 419 (1092)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~---~l~~spd----g~~las~~~---------d-~~ 419 (1092)
..|+|.|..+.+.+..++++ ....+. .+.|..+ -.+|++|+. . |.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~------------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr 63 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE------------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR 63 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE------------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred cEEEEEeCCCCeEEEEEECC------------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence 35888998888877665543 223333 4445543 578888743 2 88
Q ss_pred EEEEEccCC----CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEe-cCCcCeEEEee
Q 001363 420 VQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFE-GHGAPVYSLCP 493 (1092)
Q Consensus 420 i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~-~~~~~v~~i~~ 493 (1092)
|.++++... ..++.... ....++|++++-- ++. |+.+. .+.|.+|++...+ ....-. .....+.++..
T Consensus 64 i~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~---lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 64 ILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR---LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE---EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred EEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE---EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 999999984 22333222 2457789988766 343 33333 4789999998887 433222 12235566654
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCc-eEE--ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 494 HAKENIHFIFSISVDGKIKAWLYDSLGA-RVD--YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~--~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
. +.+++.|.....+.++.++.... ... .......++++.|-++++.++.+-. .+.+.++...
T Consensus 138 ~----~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~ 202 (321)
T PF03178_consen 138 F----KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYN 202 (321)
T ss_dssp E----TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-
T ss_pred c----ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEEC
Confidence 2 34899999988888886655332 222 2233456888888877776665533 4556665543
No 379
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.08 E-value=0.19 Score=55.54 Aligned_cols=83 Identities=8% Similarity=0.065 Sum_probs=56.7
Q ss_pred CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEE-EEEcCCCC-----------------CEEEE
Q 001363 801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LAFNPHDN-----------------NVIAI 861 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~-----------------~~las 861 (1092)
....+.+++.+|++++.|+.++ |.|.++|+.++..++.+++..+.-.. +....... -+++.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4566889999999998888764 99999999999888877765442111 11100011 13444
Q ss_pred EeCCCcEEEEEcCCceeeEeec
Q 001363 862 GMDDSTILIYNARSSEVISKLE 883 (1092)
Q Consensus 862 g~~dg~v~iwd~~~~~~~~~l~ 883 (1092)
+-.-|.|.||.+.+|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6678899999999887666554
No 380
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.07 E-value=0.21 Score=52.14 Aligned_cols=147 Identities=17% Similarity=0.137 Sum_probs=89.8
Q ss_pred CeEEEEEcCCCCCEEEEEe-CCC--cEEEEEcCCceeeEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE-cCCCc
Q 001363 845 TATSLAFNPHDNNVIAIGM-DDS--TILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG 919 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~-~dg--~v~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd-~~~~~ 919 (1092)
.+.+.++++ +++.+|... .++ .++++.. +..... +.+ ..++...|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 677666555 233 4555543 333333 233 3688899999987777777677777774 23332
Q ss_pred eeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe----CCcEEEEEcC---Cc--eee---eeeccCCCCCEEEEEEe
Q 001363 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFS 987 (1092)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----d~~i~lwd~~---~~--~~~---~~~~~~h~~~v~~l~fs 987 (1092)
... ..+...... ..|..+.+||||..+|... ++.|.+--+. .+ ..+ ..........++.+.|.
T Consensus 100 ~~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GEP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred cee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 211 112221111 1599999999999999833 5677777553 23 111 11111235688999999
Q ss_pred cCCCEEEEEECCCc
Q 001363 988 CDCRMVFTSFVDGT 1001 (1092)
Q Consensus 988 ~dg~~l~t~~~Dg~ 1001 (1092)
+++++++.+...+.
T Consensus 175 ~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 175 DDSTLVVLGRSAGG 188 (253)
T ss_pred CCCEEEEEeCCCCC
Confidence 99998777665443
No 381
>PRK10115 protease 2; Provisional
Probab=97.07 E-value=0.83 Score=55.37 Aligned_cols=246 Identities=9% Similarity=0.041 Sum_probs=123.3
Q ss_pred CcEEEEEECCCCCEEEEEeCC-----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----Cc
Q 001363 397 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT 466 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~ 466 (1092)
-.+..+.|||||++||.+... ..|++-|+.+|+.+.. .+.+ . -..++|++|++.+ +++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~~-~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWTF-YYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCEE-EEEEecCCCCCCCE
Confidence 356678999999999987332 3589999998864331 1212 1 1458999999863 3333222 36
Q ss_pred EEEEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCC--CCceEEecCCCCceEEEEEcc
Q 001363 467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA 539 (1092)
Q Consensus 467 i~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~ 539 (1092)
|..+++.++ +....+........ +....+.++.+++..+.. +.+.+++... ................+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 888899888 33334443333333 222224355655544433 4688888532 222222222222222222 2
Q ss_pred CCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEe
Q 001363 540 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID 617 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~ 617 (1092)
.+..++..+..+.....|...++. .++. ..+..+. ....+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 234444444333334456556665 2322 2333331 123677777763 34555566677655554332 22334433
Q ss_pred CCCCCCCCceEEEc--cCCC-EEEEEeC---CCeEEEEECCCCc
Q 001363 618 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPESN 655 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iw~~~~~~ 655 (1092)
.... ..+..+.++ +++. ++++.+. -+.+..+|..+++
T Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 2111 112222334 3434 3333332 3677788877653
No 382
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0035 Score=65.60 Aligned_cols=106 Identities=14% Similarity=0.257 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHhcCCCh----------hHHHHHHHhcCcCHHHHHHHhccC-CCcCCccccchhhh
Q 001363 6 KDLVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYF 74 (1092)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~----------~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~ 74 (1092)
+.+...|..++...|+.+.+..|-+|+|... ++.++-++|.+||-.-|++.+..- ..+.+. ..++-|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~ 194 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHH
Confidence 3457899999999999999999999999864 278889999999999999998663 223322 123789
Q ss_pred HhHHhhhhhhccCCCHH--HHHHHHHhhccccCCCCHHHHH
Q 001363 75 EIRKQNFFEALDGHDIA--KALNILKKDLKDFAPGNEELFK 113 (1092)
Q Consensus 75 ~i~~q~~~Ell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~ 113 (1092)
.+..+.|++++..|... +|++..|+.++|+........+
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQ 235 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQ 235 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHH
Confidence 99999999999999887 9999999999999654433333
No 383
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0027 Score=70.16 Aligned_cols=93 Identities=22% Similarity=0.430 Sum_probs=72.4
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE-EEEECCCCCEEEEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~las~ 414 (1092)
.|.-+.|+|.-. ++|.+..+|.|.+..++ .+.+ |+ +.-|+..|+ +++|.|||+.||+|
T Consensus 22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGkllaVg 80 (665)
T KOG4640|consen 22 NIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLAVG 80 (665)
T ss_pred ceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEEEE
Confidence 788899999988 89999999999998887 4433 33 333666676 99999999999999
Q ss_pred eCCCEEEEEEccCCCcccceEEEcccccceeEEEEec
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 451 (1092)
-.||+|++-|+++|..+... ...-...|.++-|.+
T Consensus 81 ~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 81 FKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred ecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 99999999999998765531 122344567777763
No 384
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.98 E-value=0.18 Score=55.78 Aligned_cols=84 Identities=12% Similarity=0.248 Sum_probs=58.6
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-----------------CE
Q 001363 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQ 592 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~ 592 (1092)
..+.+++.+|++++.++. |.-+.|.++|..++..++..+|.. +..+.-+.....+ .+
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence 357889999998877664 346779999999999999988876 2222222221111 12
Q ss_pred E-EEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 593 I-LAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 593 l-~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
| +-+-.-|.|.||.++.|..+..+...
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 2 33667899999999999888877654
No 385
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.95 E-value=0.7 Score=48.97 Aligned_cols=158 Identities=11% Similarity=0.030 Sum_probs=82.8
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001363 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~ 919 (1092)
....+.+..+..++ |+++++++..-....-||--...-...-..-+..|.+|.|+||+.+.+.+ ..|.|+.=+.....
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34456788899999 89998877655555567654321122222346789999999998776644 88888887722211
Q ss_pred eeeeeeeecC-CCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeecc--CCCCCEEEEEEecCCCEEEEE
Q 001363 920 IQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTS 996 (1092)
Q Consensus 920 ~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~t~ 996 (1092)
..-.+.+... .... .+..++|.+++...|++..|.+. ...+.|+.-..... .-......+.|.++.+-++ .
T Consensus 219 ~~w~~~~~~~~~~~~----~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-l 292 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGY----GILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-L 292 (302)
T ss_dssp EEE---B-TTSS--S-----EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E
T ss_pred cccccccCCcccCce----eeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE-E
Confidence 1111111111 1111 37899999999999988887553 45555554443222 2255688899987765555 4
Q ss_pred ECCCcEEEE
Q 001363 997 FVDGTLSIH 1005 (1092)
Q Consensus 997 ~~Dg~i~vw 1005 (1092)
+.+|.+.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 578887655
No 386
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.91 E-value=0.0022 Score=43.81 Aligned_cols=39 Identities=36% Similarity=0.622 Sum_probs=34.6
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd 914 (1092)
+++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 387
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0049 Score=68.20 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001363 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 922 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~ 922 (1092)
..+.-+.|+| .-.++|++..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4677899999 88899999999999999998 777888887888888 99999999999999999999999999976443
Q ss_pred eeeeecCCCCcCCCCCceEEEEc
Q 001363 923 CRSLQTPDGVMTLAPSETHIQFH 945 (1092)
Q Consensus 923 ~~~~~~~~~~~~~~~~v~~l~~s 945 (1092)
...... . ..|..+-|+
T Consensus 99 ~~~~s~----e---~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSV----E---TDISKGIWD 114 (665)
T ss_pred cccccc----c---cchheeecc
Confidence 321111 1 246677776
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.044 Score=59.62 Aligned_cols=146 Identities=9% Similarity=0.114 Sum_probs=101.7
Q ss_pred EEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCE--E-----EEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001363 858 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930 (1092)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~--l-----~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 930 (1092)
+|.++.....++--|++.|+.+..+.-|.. |.-+.+.|+.+. | +.|=.|..|.-||..-.........+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 444555666788899999999999997777 888888887532 2 22445777899987642221111111111
Q ss_pred CCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 931 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 931 ~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
........|.+-..+|..++.+.+|.|++||- .+....+.+++-..+|..+..+.||++|+.. .+..+.+-++.
T Consensus 427 --y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 --YSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred --cccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 11112356677777777777789999999998 6766667788889999999999999999855 46677777654
No 389
>PRK10115 protease 2; Provisional
Probab=96.80 E-value=2 Score=52.07 Aligned_cols=244 Identities=9% Similarity=0.019 Sum_probs=121.2
Q ss_pred CceEEeecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.+..+.+||||++++.+.+.+| +|++-|+.+|..+.. . +.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~-----------------i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-L-----------------LDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-c-----------------ccC---cceEEEEeeCCCEE
Confidence 5777889999996555544444 488999988864421 0 111 11459999999988
Q ss_pred EEEeCC------CEEEEEEccCCCcccceEEEccccccee-EEEEecCCCcEEEEEEe-CCCcEEEEECC--CCceeEEE
Q 001363 412 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF 481 (1092)
Q Consensus 412 as~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~l~l~s~~-~d~~i~vwd~~--~~~~~~~~ 481 (1092)
+....+ ..|..+++.++..-... .+.+...... .+..+.|++++++-+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776442 35788888877311111 2222222233 33445588853322222 34578888843 34422222
Q ss_pred ecCCcCeEEEeecccCCccEEEEEecC-C--eEEEEEcCC-CCceEEecC-CCCceEEEEEccCCCEEEEEecCCCCcee
Q 001363 482 EGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDS-LGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~d-g--~i~vwd~~~-~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1092)
....+....+. + . .+.+++....+ . .|...++.. .+....+.. ....+..+.+. ++.|+..... .+...
T Consensus 266 ~~~~~~~~~~~-~-~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-H-Y-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS 339 (686)
T ss_pred ECCCCCEEEEE-e-C-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence 21222222222 1 1 12233332222 2 343344442 222223333 23367777776 4455544432 34666
Q ss_pred EEEEeCCCCeEEEEEe-eccccCCceEEEEEc--CCCC-EEEEEe---CCCcEEEEECCCCc
Q 001363 557 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ 611 (1092)
Q Consensus 557 i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~~-~l~~~s---~dg~i~iwd~~~~~ 611 (1092)
+++++..++.. ..+. ... ..+..+.++ +++. .+++.+ .-+.+..+|..+++
T Consensus 340 l~~~~~~~~~~-~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTREV-IGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCce-EEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 78888654433 3332 111 123333344 3434 333332 44678888888765
No 390
>PHA02713 hypothetical protein; Provisional
Probab=96.80 E-value=0.065 Score=63.16 Aligned_cols=199 Identities=10% Similarity=0.008 Sum_probs=108.1
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCcee--eEeeccccCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCcee
Q 001363 855 DNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ 921 (1092)
Q Consensus 855 d~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg-----~I~iwd~~~~~~~ 921 (1092)
++.+.+.|+.+ ..+..||..+..- +..+.........+ .-+|+..+.||.++ ++..||..+++..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 66788888754 3577888877542 22222111112222 23678888888764 4788998876533
Q ss_pred eeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eC-----------------------CcEEEEEcCCceeeeeeccCC
Q 001363 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----------------------THLAIYEAEELTCLKQWFPIS 977 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d-----------------------~~i~lwd~~~~~~~~~~~~~h 977 (1092)
....+..... ... +..-+|++.+.| .+ ..+..||..+.+-... .+-.
T Consensus 381 ~~~~mp~~r~------~~~--~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~ 451 (557)
T PHA02713 381 MLPDMPIALS------SYG--MCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFW 451 (557)
T ss_pred ECCCCCcccc------ccc--EEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CCCC
Confidence 3222221111 111 223367766664 22 2477888876654322 1111
Q ss_pred CCCEEEEEEecCCCEEEEEECCC------cEEEEEcCC-CceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEe
Q 001363 978 SVPISQATFSCDCRMVFTSFVDG------TLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1050 (1092)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~~~Dg------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1050 (1092)
.......+..-+|+..+.||.++ .+..||..+ .+... . ...+.. .....++.. ++...++|+
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~-~---~~m~~~-----r~~~~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL-I---TTTESR-----LSALHTILH--DNTIMMLHC 520 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE-c---cccCcc-----cccceeEEE--CCEEEEEee
Confidence 11222223345677777787542 467888887 44331 1 112211 112223333 478999999
Q ss_pred CCC--cEEEEecCCCCCccccCCCCCccc
Q 001363 1051 TNG--EVYVIEPNEPGDTWAVLPPDEIVG 1077 (1092)
Q Consensus 1051 ~dg--~v~~w~~~~~~~~~~~~~~~~~~~ 1077 (1092)
.|| ++..||+ ...+|...+|.-.+.
T Consensus 521 ~~~~~~~e~yd~--~~~~W~~~~~~~~~~ 547 (557)
T PHA02713 521 YESYMLQDTFNV--YTYEWNHICHQHSNS 547 (557)
T ss_pred ecceeehhhcCc--ccccccchhhhcCCc
Confidence 999 7788888 455699888876544
No 391
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.031 Score=60.72 Aligned_cols=144 Identities=13% Similarity=0.139 Sum_probs=95.6
Q ss_pred CCCEEE-EEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEE-----EEEeCCCcEEEEECCCC-c-ee
Q 001363 407 DGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV-----ITCGDDKTIKVWDAVTG-S-RT 478 (1092)
Q Consensus 407 dg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l-----~s~~~d~~i~vwd~~~~-~-~~ 478 (1092)
+..+|+ ++.....++--|++.|+.+. ++.-|.. |+-+.+.|+.+.-.+ +.|-.|..|.-||++-. . .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 444444 34444568888999998776 5555555 888888887652111 23556889999998732 2 23
Q ss_pred EEEecCC----cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 479 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 479 ~~~~~~~----~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
...++|. ....|.+ ...+ .+++.||.+|.||+||--.......+.+-+.+|..+..+.||+++++.+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~a--TT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFA--TTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceee--ecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 2233332 2233333 2444 4899999999999999744445556777888999999999999988765 4
Q ss_pred eeEEEEeC
Q 001363 555 SFLVEWNE 562 (1092)
Q Consensus 555 ~~i~iwd~ 562 (1092)
.++.+.+.
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 45666554
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.75 E-value=0.23 Score=51.83 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=91.4
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEE-cCCceee
Q 001363 803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI 879 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd-~~~~~~~ 879 (1092)
..+.+.++|+|++.+|... ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3678999999999888776 5444444444333333332 233788889999 677777777677777774 3333321
Q ss_pred -Eeec--cccCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCcee----eeeeeecCCCCcCCCCCceEEEEccCCC
Q 001363 880 -SKLE--GHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 880 -~~l~--~h~~~V~~l~~spdg~~l~s~s---~Dg~I~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
..+. .-.+.|+.+.+||||..+|... .++.|.+=-+...... ....+...... ...+..++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence 1111 1122899999999999988766 3567777765532211 11112222111 13689999999999
Q ss_pred EEEEE
Q 001363 950 RFLLV 954 (1092)
Q Consensus 950 ~la~~ 954 (1092)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88874
No 393
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.70 E-value=0.0032 Score=42.97 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=32.6
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEe
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 363 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd 363 (1092)
....+..|.+.|++++|+|++. ++++|+.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 4566778999999999999997 789999999999996
No 394
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.67 E-value=0.057 Score=59.82 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=93.9
Q ss_pred CCeEEEEEcCCCCCEEEEEe--CCCcEEEEEcCCceeeEeeccccCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCC
Q 001363 844 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spd----g~~l~s~s~Dg~I~iwd~~~ 917 (1092)
.++..+||.. +.+.+.+.- .+|.+++= +.+.+.+|+ .|..+.|+|- -..|...-.-+.|.||-+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4678899984 444444432 23333331 223455554 4889999985 33455567788899999873
Q ss_pred Cceeeeeee--ecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEE
Q 001363 918 WGIQTCRSL--QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 994 (1092)
Q Consensus 918 ~~~~~~~~~--~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 994 (1092)
......+.+ ++-+-.....--...+.|+|....|++ ...+.-.++++......-..-....+.|-|.+|..||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 322222222 222111111123467899999999988 44444455666533322221223478999999999998877
Q ss_pred EEE-CCCcEEEEEcCCCc
Q 001363 995 TSF-VDGTLSIHEASNLE 1011 (1092)
Q Consensus 995 t~~-~Dg~i~vwd~~~~~ 1011 (1092)
++- ..=.-++||-....
T Consensus 172 VAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred EEeCCeEEEEEecCchhh
Confidence 654 33346799865543
No 395
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.60 E-value=0.087 Score=45.39 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=67.1
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEc
Q 001363 889 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964 (1092)
Q Consensus 889 V~~l~~sp---dg-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~ 964 (1092)
|++|++.. || +.|+.||.|..|++|+=+. .+...... ..|++++-...+++..+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 67777765 32 6799999999999998765 22222222 2588888888877777778999999985
Q ss_pred CCceeeeeeccCCCCCEEEEEEec---CC-CEEEEEECCCcEEE
Q 001363 965 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLSI 1004 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~---dg-~~l~t~~~Dg~i~v 1004 (1092)
. .+.|.......++++++.. || .-|++|-.+|.|-+
T Consensus 71 ~----~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 S----QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c----ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 3 2223333344577766543 33 25888888887653
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.57 E-value=0.19 Score=59.03 Aligned_cols=235 Identities=11% Similarity=0.025 Sum_probs=125.1
Q ss_pred CCCEEEEEeCC------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC------CcEEEEECCC
Q 001363 407 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT 474 (1092)
Q Consensus 407 dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~~ 474 (1092)
.+.++++|+.+ ..+..+|..+++-.. ...+. +...-.++++.. +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45566666655 358888888763221 11122 222233444443 44 78888888 3577888887
Q ss_pred CceeE--EEecCCcCeEEEeecccCCccEEEEEecCCe-----EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 475 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 475 ~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
++-.. .+...........+ +|.+.+.|+.||. +-.||..+.+-...-......-..-...-+|+..++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 76432 11111111111111 6678889998875 6667766544333222222122222334467777777
Q ss_pred ecCCCCc--eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceEEEEeCCC
Q 001363 548 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 548 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-----i~iwd~~~~~~~~~~~~~~ 620 (1092)
|.++..+ ..+..||+.+++....-.-.. .+.... ++. -++...++||.|+. |..||..+.+....-....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 7655432 678899998876644332222 011122 222 24566667776653 7789988877665532222
Q ss_pred CCCCCceEEEccCCCEEEEEeCCC-----eEEEEECCCCc
Q 001363 621 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPESN 655 (1092)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~ 655 (1092)
....+..+ .-++...++|+.|| ++..||..+.+
T Consensus 512 ~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 512 PRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccccccEE--EECCEEEEEecccCccccceeEEcCCCCCc
Confidence 21111112 23577778887764 45566665553
No 397
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.55 E-value=0.99 Score=50.19 Aligned_cols=284 Identities=12% Similarity=0.104 Sum_probs=147.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCc-----eEEEEeCCCCCCCCceEEEc---c--CCCEEEEEeCCCeEEEEECCCC--c--
Q 001363 590 KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFN---K--NGTLLAVIANENRIKILETPES--N-- 655 (1092)
Q Consensus 590 ~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s---~--~~~~l~~~~~dg~i~iw~~~~~--~-- 655 (1092)
...+++||..|.++||+..... .+-..+.. .+|..+..- + +...||+ -.-..+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 4689999999999999986543 22222222 235555432 2 2334555 34567888876311 1
Q ss_pred -----eeeecccccC--ceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccccc
Q 001363 656 -----SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1092)
Q Consensus 656 -----~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~ 728 (1092)
.+.....|.- ...++.+.|.+. ......+..-+.||.+.+++-+... ....+
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg-----------------~~~~~~IcVQS~DG~L~~feqe~~~----f~~~l 171 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGG-----------------VKGRDFICVQSMDGSLSFFEQESFA----FSRFL 171 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCC-----------------CCCceEEEEEecCceEEEEeCCcEE----EEEEc
Confidence 1111111111 112222222221 1224567778899999999855322 11112
Q ss_pred CCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCccc----------ccccCCccccCCCCCceeeecCCC
Q 001363 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA----------TTKVPPRLYQPRHGPQFMVNDTTD 798 (1092)
Q Consensus 729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~l~~ 798 (1092)
|..-. ...+.|.+....+++++++..+..|+++.-....+... ....-..-|...-|+...
T Consensus 172 p~~ll---PgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l------ 242 (418)
T PF14727_consen 172 PDFLL---PGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL------ 242 (418)
T ss_pred CCCCC---CcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE------
Confidence 22112 22468888888899999999999998754222111110 111122335444444222
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEE-E------cCCCCCEEEEEeCCCcEEEE
Q 001363 799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA-F------NPHDNNVIAIGMDDSTILIY 871 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~-~------s~~d~~~lasg~~dg~v~iw 871 (1092)
.+..+.++.....+++-+...+.+.+-. |......+ ......|++ | .+..+..+++++.++++.||
T Consensus 243 -----~i~v~~~~~~~~~IvvLger~Lf~l~~~-G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy 315 (418)
T PF14727_consen 243 -----DIQVVRFSSSESDIVVLGERSLFCLKDN-GSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVY 315 (418)
T ss_pred -----EEEEEEcCCCCceEEEEecceEEEEcCC-CeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEE
Confidence 2333444444555666666777776653 44333222 122222221 1 12112358889999999998
Q ss_pred EcCCceeeEeeccccCCeEEEE---EcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 872 NARSSEVISKLEGHSKRVTGLV---FSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 872 d~~~~~~~~~l~~h~~~V~~l~---~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
.= .+.+........+| ++. |..-...+++-+.+|.+.+-=+.+
T Consensus 316 ~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 316 ED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred eC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 53 34444443333333 332 223356888889999988876655
No 398
>PHA02713 hypothetical protein; Provisional
Probab=96.50 E-value=0.12 Score=61.02 Aligned_cols=203 Identities=8% Similarity=-0.014 Sum_probs=102.6
Q ss_pred CCCcEEEEEEeCC------CcEEEEECCCCceeE--EEecCCcCeEEEeecccCCccEEEEEecCC-----eEEEEEcCC
Q 001363 452 PCKQISVITCGDD------KTIKVWDAVTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS 518 (1092)
Q Consensus 452 d~~~l~l~s~~~d------~~i~vwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~ 518 (1092)
++. +++.||.+ ..+..||..+..... .+.........+.+ ++.+.+.|+.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 555 66667643 347788887765321 11111111112222 556777777654 377888776
Q ss_pred CCceEEecCCCCceEEEEEccCCCEEEEEecCCC-------------------CceeEEEEeCCCCeEEEEEeeccccCC
Q 001363 519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-------------------GESFLVEWNESEGAIKRTYQGLQLQHN 579 (1092)
Q Consensus 519 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~-------------------~~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1092)
.+-...-..+.......+..-+|+..+.||.++. ....+..||+.+.+....-.-.. ...
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~ 455 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GTI 455 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-ccc
Confidence 4322211111111111122346777777765321 02458889988876543222111 011
Q ss_pred ceEEEEEcCCCCEEEEEeCC------CcEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC--eEEEEE
Q 001363 580 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE 650 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iw~ 650 (1092)
....+ .-++...+.|+.+ ..+..||..+ .+....-...........++ -+++..++|+.++ .+..||
T Consensus 456 ~~~~~--~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 456 RPGVV--SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cCcEE--EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence 11122 2245555666643 2467899887 55543333222221222222 2688889999888 777888
Q ss_pred CCCCceeeecccccC
Q 001363 651 TPESNSVDAAGVLSD 665 (1092)
Q Consensus 651 ~~~~~~~~~~~~~~~ 665 (1092)
..+.+.......|..
T Consensus 532 ~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 532 VYTYEWNHICHQHSN 546 (557)
T ss_pred cccccccchhhhcCC
Confidence 887766555444443
No 399
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.49 E-value=1.2 Score=48.74 Aligned_cols=113 Identities=24% Similarity=0.286 Sum_probs=58.8
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC---CCEEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLLG 412 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~la 412 (1092)
..+.|+|.|||+ ++++ ...|.|++++ ..+..... +-++ ..+..........++|+|+ ..+|.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~~----v~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKTP----VADL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECEE----EEE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcce----eccc--------ccccccccCCcccceeccccCCCCEEE
Confidence 568999999997 6665 4589999999 44543110 0000 0113345678899999995 33443
Q ss_pred E-EeCC--------CEEEEEEccCCC-ccc---ce-EEEcc---cccceeEEEEecCCCcEEEEEEeCCC
Q 001363 413 V-AYSK--------HIVQLYAYHGGS-DAR---QQ-LEIDA---HVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 413 s-~~~d--------~~i~iwd~~~~~-~~~---~~-~~~~~---h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
+ .+.. ..|.-|....+. .+. .+ ..+.. ....-..|+|.|||. +.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 3 3321 245555555441 111 11 01111 223456699999995 455555443
No 400
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.49 E-value=0.06 Score=63.97 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=99.1
Q ss_pred CCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC-eEEEeeccc---CCccEEEEEecCCeEEEEEcCCCCceEE-ec-
Q 001363 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVD-YD- 526 (1092)
Q Consensus 453 ~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~i~~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~- 526 (1092)
.+.++|........|+-.|+++|+.+..+..|... |..++.... -+..-.+.|-.+..+..||.+-...... ..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33334555556788999999999999999888755 777654211 0123466777888899999987543221 11
Q ss_pred ---CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001363 527 ---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 527 ---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1092)
.......|++-+.+|. ||+|+. +|-|++||.-..+....+.+.. .+|..+..+.||+++++.+. ..+.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLl 642 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLL 642 (794)
T ss_pred cccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEE
Confidence 1234677888777775 566665 4459999965444444555555 89999999999999988775 4555
Q ss_pred EEEC
Q 001363 604 IWDM 607 (1092)
Q Consensus 604 iwd~ 607 (1092)
+++.
T Consensus 643 Li~t 646 (794)
T PF08553_consen 643 LIDT 646 (794)
T ss_pred EEEE
Confidence 6654
No 401
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.46 E-value=0.098 Score=45.10 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=65.2
Q ss_pred ceEEee---cCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 337 PMSMDF---HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 337 V~~v~~---spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
|+++++ .-||..-|++|+.|..|+||+-+ +.+.. + ...+.|++++-... .+++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--i------------------~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--I------------------TETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--E------------------ecccceEEEEEcCC-CEEEE
Confidence 555555 45666679999999999999844 33332 1 14567888877766 67889
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEe---cCCCcEEEEEEeCCCcEE
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS---APCKQISVITCGDDKTIK 468 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s---~d~~~l~l~s~~~d~~i~ 468 (1092)
+..+|+|-+|+-.. + ....+... .+.++++. .||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~----R-lWRiKSK~-~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ----R-LWRIKSKN-QVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcc----e-eeeeccCC-CeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99999999887643 1 11222222 24455443 34443 588888888764
No 402
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.46 E-value=0.75 Score=50.35 Aligned_cols=241 Identities=12% Similarity=0.127 Sum_probs=119.7
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCcee---eEEe----cCCCCCeEEEEEcCC---CCCEEEEEeCC--------
Q 001363 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD-------- 865 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---d~~~lasg~~d-------- 865 (1092)
..+.|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999998877789999999 44443 2222 223456799999992 23333333321
Q ss_pred CcEEEEEcCCc-------ee-eEeecc---ccCCeEEEEEcCCCCEEEEEeCCCc-----------EEEEEcCC-Cceee
Q 001363 866 STILIYNARSS-------EV-ISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-----------IFVWDVDG-WGIQT 922 (1092)
Q Consensus 866 g~v~iwd~~~~-------~~-~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~-----------I~iwd~~~-~~~~~ 922 (1092)
..|.-|....+ +. +..+.. ....-..|+|.|||.+.++.+..+. =+|+.+.. +....
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 13444444333 11 122222 2223456999999988888776543 01111111 00000
Q ss_pred eeeee---------cCCCCcCCCCCceEEEEccC-CCEEEE--EeCCcEEEEEcCCcee----------------e----
Q 001363 923 CRSLQ---------TPDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTC----------------L---- 970 (1092)
Q Consensus 923 ~~~~~---------~~~~~~~~~~~v~~l~~s~d-g~~la~--~~d~~i~lwd~~~~~~----------------~---- 970 (1092)
..... -..|. .....++|.|. |++.++ +.+..=.|.-+..|.- .
T Consensus 162 dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00000 00011 12467999999 887776 4443322322222210 0
Q ss_pred -------eeeccCCCCCEEEEEEec-------CCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEE
Q 001363 971 -------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1036 (1092)
Q Consensus 971 -------~~~~~~h~~~v~~l~fs~-------dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1036 (1092)
..+.-.+...+..+.|-. +|.++++.-..+.|....+..+......... . . ...-+++.+
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~-~---~~~~r~~~v 311 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEF--L-G---GFGGRPRDV 311 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEE--C-T---TSSS-EEEE
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEc--c-c---cCCCCceEE
Confidence 000112345677777753 4556666655667777777755333222211 1 1 112246688
Q ss_pred EECCCCCCEEEEEeCCCcEE
Q 001363 1037 AAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus 1037 ~~~p~d~~~l~~~~~dg~v~ 1056 (1092)
++.| ||.++++.+.+|.|+
T Consensus 312 ~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEET-TSEEEEEE-TTTTEE
T ss_pred EEcC-CCeEEEEECCCCeEe
Confidence 8998 588888888888875
No 403
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.37 E-value=1.4 Score=45.01 Aligned_cols=185 Identities=9% Similarity=0.095 Sum_probs=113.4
Q ss_pred CeeEEEEecCCCEEEEEe-C--CeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee
Q 001363 804 AVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s-d--g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1092)
-...+.|..+|.++-+.+ - ..|+.+|+.+++......-.. ----.++.. ++++..-.-.++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 345788878888877776 2 469999999998776544332 223445555 4556666788999999999999988
Q ss_pred EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCc
Q 001363 880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 958 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~ 958 (1092)
.++. ..+.=+.++ .|++.|+.......|.++|.++-+......+....... ..+.-+.+- +|...|=. ....
T Consensus 124 ~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv---~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 124 GTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV---SNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE------EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEEC---CCcEeEEEE-cCEEEEEeCCCCe
Confidence 8886 345667777 46777777666777999998875544433333221112 245566665 55444433 5567
Q ss_pred EEEEEcCCceeeeeecc-----------CC---CCCEEEEEEecCCCEEEEEE
Q 001363 959 LAIYEAEELTCLKQWFP-----------IS---SVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 959 i~lwd~~~~~~~~~~~~-----------~h---~~~v~~l~fs~dg~~l~t~~ 997 (1092)
|...|..+|+....+-. .+ ..-...+++.|++..+...|
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88888888887764310 01 34577899988776555544
No 404
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.18 E-value=2.9 Score=46.60 Aligned_cols=277 Identities=13% Similarity=0.103 Sum_probs=149.0
Q ss_pred CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-----CCCEEEE
Q 001363 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFS 819 (1092)
Q Consensus 745 ~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~-----dg~~l~~ 819 (1092)
+...+++|+..|.+++|+-......+. ..+.... -..+|..+..-+ +...||+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-----------------~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaV 93 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE-----------------DLLLETQ-----LKDPILQVECGKFVSGSEDLQLAV 93 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc-----------------cEEEEEe-----cCCcEEEEEeccccCCCCcceEEE
Confidence 345688899999999998533222111 1122211 344566555432 3456777
Q ss_pred EeCCeEEEEEcCC--ce-------eeEEecCCC--CCeEEEEEcCC----CCCEEEEEeCCCcEEEEEcCCceeeEeecc
Q 001363 820 ASGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 820 ~sdg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
-.-..+.||.+.. |. .+..+..|. .....++.-|. +..++++=+.||.+.+|+-+.-.....+.+
T Consensus 94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~ 173 (418)
T PF14727_consen 94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD 173 (418)
T ss_pred ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence 6778888888731 11 112222232 23334443332 246899999999999999886554455544
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee---------------------eeeeeecCCCCcCCCCCceEEE
Q 001363 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ---------------------TCRSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~---------------------~~~~~~~~~~~~~~~~~v~~l~ 943 (1092)
.--...++|.+.-..+++++.+..|.-|....-... ....+...+... .|..+.
T Consensus 174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l----~i~v~~ 248 (418)
T PF14727_consen 174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL----DIQVVR 248 (418)
T ss_pred -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE----EEEEEE
Confidence 222334788888889999999988888875321000 000011111111 233444
Q ss_pred EccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEE-EEec----CCC---EEEEEECCCcEEEEEcCCCceEEe
Q 001363 944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA-TFSC----DCR---MVFTSFVDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus 944 ~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l-~fs~----dg~---~l~t~~~Dg~i~vwd~~~~~~~~~ 1015 (1092)
++.....+++-.+.++...+.. |.......- .....++ .|.. ++. .++.++.++++.||.=.+....+.
T Consensus 249 ~~~~~~~IvvLger~Lf~l~~~-G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~ 325 (418)
T PF14727_consen 249 FSSSESDIVVLGERSLFCLKDN-GSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQ 325 (418)
T ss_pred cCCCCceEEEEecceEEEEcCC-CeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecC
Confidence 4444455555556666666653 443332111 2222222 2222 322 477788999999997444433333
Q ss_pred eccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001363 1016 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 1016 ~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
.. ..+|. +.++.-++-...|++-+.+|.+.+-=+-.
T Consensus 326 l~----------~~PVa-l~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 326 LP----------HVPVA-LSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CC----------CCCEE-EEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 31 12222 22332222357899999999998865543
No 405
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.054 Score=64.06 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=78.5
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001363 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
-+..++.|+..|.+-..|+.+. ++....-..-.++|++++|+.||+ +++.|-.+|.|.+||+.+++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4567888988898988888764 221111123456999999999999 789999999999999999999999998888
Q ss_pred CeEEEeecc-cCCccEEEEEecCCeEEEEEc
Q 001363 487 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY 516 (1092)
Q Consensus 487 ~v~~i~~~~-~~~~~~l~s~~~dg~i~vwd~ 516 (1092)
+.+.+-+.. ..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 887775432 334456777777776 5544
No 406
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.13 Score=61.29 Aligned_cols=249 Identities=9% Similarity=0.042 Sum_probs=143.0
Q ss_pred CCCeeEEEEecCCCEEEEEe--C-CeEEEEEcCCceeeE-----EecCC------CCCeEEEEEcCCCCCEEEEEeCCCc
Q 001363 802 QEAVPCFALSKNDAYLFSAS--G-GVISLYIVMTFKTIL-----TIMPP------SPTATSLAFNPHDNNVIAIGMDDST 867 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~s--d-g~i~iwd~~~~~~~~-----~~~~~------~~~i~~l~~s~~d~~~lasg~~dg~ 867 (1092)
...+..+...+|+...++.. + -.|..||+.+...-. .+..| .....++.|.|.=-...|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45666777888887776664 3 358999987543222 12212 2344677788743445666778999
Q ss_pred EEEEEcCCce-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEcc
Q 001363 868 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 946 (1092)
Q Consensus 868 v~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 946 (1092)
|++..+.-.. .+..+. -....++++|+|.|+.++.|-..|++.-|...-.... .+..+.... ...|.++.|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence 9988775432 223333 5567899999999999999999999998876653211 222222111 13688888888
Q ss_pred CCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCC
Q 001363 947 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1026 (1092)
Q Consensus 947 dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1026 (1092)
.-.++++-... ++ ....+...+++.+ .-.-||.+.+-..-.+..- | ..++...
T Consensus 254 t~eflvvy~n~--------ts--------~~~dpd~y~~~~~------k~kp~g~~nF~E~~d~tpp--f---g~~~rq~ 306 (1405)
T KOG3630|consen 254 TQEFLVVYGNV--------TS--------ETDDPDSYDQKMY------KIKPDGSANFQETFDITPP--F---GQIVRQP 306 (1405)
T ss_pred ceeEEEEeccc--------cc--------CcCCchhhhhccc------cccCcceeeeccccCCCCC--c---cccCccc
Confidence 77777761110 00 0011111111111 1113444443332222221 1 0111111
Q ss_pred ccccccceEEEECCCCCCEEEEEeC-CCcEEEEecCCCCCccccCCCCCcccCCCCCCccccc
Q 001363 1027 SCLHVYPHAIAAHPLKPTQFAVGLT-NGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDR 1088 (1092)
Q Consensus 1027 ~~~~v~~~~~~~~p~d~~~l~~~~~-dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1088 (1092)
|. ....-..|.|++.+.++++.. ...|-+|... ..|....+.|-.++..+.+.++|+
T Consensus 307 h~--y~~~L~~W~~~~~~vVvvansaSsEvsila~~---~qW~~w~~vde~ra~LP~s~k~d~ 364 (1405)
T KOG3630|consen 307 HM--YKVTLSGWIEPDANVVVVANSASSEVSILASM---KQWIEWSQVDEKRAVLPISEKTDK 364 (1405)
T ss_pred hh--HHHhhhhhcccccceEEEecccccchhhhhhh---cceeeccccccceeeecccccCCC
Confidence 11 112234677766666666554 3468899982 569999999888999999888883
No 407
>PRK13684 Ycf48-like protein; Provisional
Probab=96.01 E-value=3.2 Score=45.52 Aligned_cols=157 Identities=11% Similarity=0.031 Sum_probs=87.8
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcC
Q 001363 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 965 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~ 965 (1092)
.+.+.++.+.|++.+++++ ..|.+.. ..+.+. .....+..... ..+..+++.++++.++++..|.+.+=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~~~~-----~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQRNSS-----RRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeCCCc-----ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 4568899999998766554 5564432 211111 11222222211 25889999999999888877776543344
Q ss_pred CceeeeeeccC---CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCC
Q 001363 966 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus 966 ~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1042 (1092)
.|..-.....+ ....+..+.|.+++..++ ++.+|.+. ...+.|+...........+. ..+ .+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC--
Confidence 44432221111 234578899999887665 44677554 45666655433321111111 122 344443
Q ss_pred CCEEEEEeCCCcEEEEecC
Q 001363 1043 PTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1043 ~~~l~~~~~dg~v~~w~~~ 1061 (1092)
++....++..|.|-.|+-.
T Consensus 313 ~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCceEEECCCceEEEecCC
Confidence 3455667788998887653
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.97 E-value=2.8 Score=44.56 Aligned_cols=230 Identities=11% Similarity=0.069 Sum_probs=111.4
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-cee-
Q 001363 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEV- 878 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~- 878 (1092)
...++.|..+ ..++++..+ +.+.....|+.-..+. .-.+....+.... ++..++ ++..|.| |...+ |+.
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~i--y~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAI--YRTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--E--EEESSTTSSE
T ss_pred eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcE--EEeCCCCCCe
Confidence 4567777643 445555545 3333434343332221 1222333333333 333333 4445543 33333 321
Q ss_pred eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCc
Q 001363 879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 958 (1092)
Q Consensus 879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~ 958 (1092)
......-.+.+..+.-++||+++++++.-....-||-.... ......... ..|..+.|+|++.+.+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcE
Confidence 22233445778899999999999987766666677765422 122222211 3699999999999988888888
Q ss_pred EEEEE-cCCceeeeee-cc--CCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccce
Q 001363 959 LAIYE-AEELTCLKQW-FP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus 959 i~lwd-~~~~~~~~~~-~~--~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
|+.=+ ....+..... .+ ...-.+..++|.+++...++|+ .|+ .+...+.|+.-.+.......+.. ++
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGktW~~~~~~~~~~~n-----~~-- 279 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKTWQKDRVGENVPSN-----LY-- 279 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSSS----------
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCccceECccccCCCCc-----eE--
Confidence 88877 2223222210 11 1244588999999988777665 454 45677888777666644444444 34
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEE
Q 001363 1035 AIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 1035 ~~~~~p~d~~~l~~~~~dg~v~~w 1058 (1092)
.+.|.+ ++.-.+-+.+|.|--|
T Consensus 280 ~i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEEcC--CCceEEECCCcEEEEe
Confidence 455553 2455555588877655
No 409
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.88 E-value=2.5 Score=43.33 Aligned_cols=204 Identities=16% Similarity=0.227 Sum_probs=121.8
Q ss_pred cccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001363 732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 811 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s 811 (1092)
+....+.+++|+|+.+.|++........++= ...|..+.+..+.+ -.....+.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEe
Confidence 3445599999999999999988876555432 23455466666654 2334567777
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCceeeEE-------ec--CC-CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce---
Q 001363 812 KNDAYLFSAS-GGVISLYIVMTFKTILT-------IM--PP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--- 877 (1092)
Q Consensus 812 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~-------~~--~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--- 877 (1092)
.+|+++++-- ++.+.++.+.....+.. +. .+ ....-.+||+| .+..|..+-+-.-+.||....+.
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 8888777665 57787777665432221 11 12 44667899999 66677777777777777665332
Q ss_pred eeEeeccc-------cCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC
Q 001363 878 VISKLEGH-------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 878 ~~~~l~~h-------~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
.+.....+ -..|.++.|.+ .+.+|+-+.+++.+.-.|................+-...-.....+++.++|.
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 11111112 23467788876 45667777778878777777643222112222222221112456788888888
Q ss_pred EEEEEeCCcEEE
Q 001363 950 RFLLVHETHLAI 961 (1092)
Q Consensus 950 ~la~~~d~~i~l 961 (1092)
+-+++..+-.+.
T Consensus 297 lYIvSEPnlfy~ 308 (316)
T COG3204 297 LYIVSEPNLFYR 308 (316)
T ss_pred EEEEecCCccee
Confidence 777765544433
No 410
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.80 E-value=0.68 Score=54.53 Aligned_cols=234 Identities=12% Similarity=0.097 Sum_probs=129.5
Q ss_pred cCCCEEEEEe-C------CeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCC-C-----cEEEEEcCCc
Q 001363 812 KNDAYLFSAS-G------GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-S-----TILIYNARSS 876 (1092)
Q Consensus 812 ~dg~~l~~~s-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-g-----~v~iwd~~~~ 876 (1092)
..+.+++.|+ . ..+..||..++.-.. .+. ....-.++++. ++.+.++|+.| | ++..||..+.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3445555554 2 348888888764332 222 22233455555 56888999999 3 6778888776
Q ss_pred ee--eEeeccccCCeEEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC
Q 001363 877 EV--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 877 ~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
+- +..+...........+ +|.+.|.||.||. |-.||..+.+......+... .-..-...-+|.
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCE
Confidence 42 2223222222222222 7889999999974 67777777553322111111 112233344666
Q ss_pred EEEE-EeC------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCc-----EEEEEcCCCceEEeec
Q 001363 950 RFLL-VHE------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-----LSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 950 ~la~-~~d------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~-----i~vwd~~~~~~~~~~~ 1017 (1092)
+.++ |.+ .++..||..+......-...-...-.. .-.-++...+.||.|+. |..||..+.+....
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-- 506 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-- 506 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEc--
Confidence 6666 423 358889988776443211111111112 33457888888888863 77788887766522
Q ss_pred cccccCCCCccccccceEEEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCCC
Q 001363 1018 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1072 (1092)
Q Consensus 1018 ~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~ 1072 (1092)
...... .....++.. ++...++|+.|| +|..||. ...+|...++
T Consensus 507 --~~m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp--~~d~W~~~~~ 555 (571)
T KOG4441|consen 507 --APMTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP--ETDTWTEVTE 555 (571)
T ss_pred --ccCccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCC--CCCceeeCCC
Confidence 111111 111112222 468899999887 5677866 5556877766
No 411
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.68 E-value=3 Score=42.77 Aligned_cols=171 Identities=13% Similarity=0.192 Sum_probs=108.1
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
+.+....+.++.|+| +.+.|++......-.|+=...|+.+.++.- .-.....+.+..+|++.++--.++.+.+..++.
T Consensus 81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 344556699999999 777777777777777776677888877652 122345688888999988888899999998876
Q ss_pred Ccee-eeeeeecCCCCcCC-CCCceEEEEccCCCEEEEEeCC-cEEEEEcCCce-eeee-eccCC-------CCCEEEEE
Q 001363 918 WGIQ-TCRSLQTPDGVMTL-APSETHIQFHKDQTRFLLVHET-HLAIYEAEELT-CLKQ-WFPIS-------SVPISQAT 985 (1092)
Q Consensus 918 ~~~~-~~~~~~~~~~~~~~-~~~v~~l~~s~dg~~la~~~d~-~i~lwd~~~~~-~~~~-~~~~h-------~~~v~~l~ 985 (1092)
.... .....+..-+.... ......+||.|.+..|..+.+. -+.||.++.+. .+.. ....+ -..|+++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 5321 11111111111111 2357899999999888887554 46777665332 1110 01111 23567777
Q ss_pred Eec-CCCEEEEEECCCcEEEEEcCCC
Q 001363 986 FSC-DCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 986 fs~-dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
|.+ .+.+|+-+.+++.+.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 775 4556666666777777776644
No 412
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.63 E-value=2.5 Score=41.50 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=39.2
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001363 807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 853 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 853 (1092)
.+++..+|.+.++.- .++|.-.|..+|+.+..+.-+...|++++|--
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 455566777766664 68999999999999999998999999999964
No 413
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.52 E-value=2.7 Score=41.30 Aligned_cols=136 Identities=14% Similarity=0.100 Sum_probs=77.5
Q ss_pred ccceeEEEEecCCCcEEEEEEeCC---------CcEEEEECCCCceeEEEecCCcCeEEEeecccCCc-cEEEEEecCCe
Q 001363 441 VGNVNDLAFSAPCKQISVITCGDD---------KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGK 510 (1092)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~~~d---------~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~ 510 (1092)
..+.+.-..+|+|+ +++-.-.| |.++.|-. +..+..+...-.--+.++|. .+. .+-+.-+.+-.
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd--~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWD--SDAKKFYYIDSLNYE 181 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccccccccccEEEEecc--CCCceeeehhccCCcccccc--ccCcEEEEEccCceE
Confidence 44667778899999 43322112 22333321 11111121122223455664 233 34455566777
Q ss_pred EEEEEcC--CC-----CceEEecC----CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC
Q 001363 511 IKAWLYD--SL-----GARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 579 (1092)
Q Consensus 511 i~vwd~~--~~-----~~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1092)
|.-||.+ ++ +.+..+.. .......+++..+|+..+++-. .++|...|+.+|+.+..+.-.. .
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~ 254 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---P 254 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---C
Confidence 8778743 22 22222222 1112335666778888777765 5569999999999999988776 8
Q ss_pred ceEEEEEcCC
Q 001363 580 SVSVVHFDTA 589 (1092)
Q Consensus 580 ~v~~~~~~~~ 589 (1092)
.+++++|.-.
T Consensus 255 qitsccFgGk 264 (310)
T KOG4499|consen 255 QITSCCFGGK 264 (310)
T ss_pred ceEEEEecCC
Confidence 8999999754
No 414
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.48 E-value=0.039 Score=53.65 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=70.6
Q ss_pred EEEEE-eCCeEEEEEcCCceee-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc-CCeEEE
Q 001363 816 YLFSA-SGGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGL 892 (1092)
Q Consensus 816 ~l~~~-sdg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l 892 (1092)
-+++| ++|.|.+|........ .....-...|-++.-.-+++.+..+++.||.|+.|++.-++.+.....|. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 34444 5899999987622111 11111223333333333356699999999999999999999888888888 667777
Q ss_pred EEcCCCCEEEEE--eCCCcEEEEEcCC
Q 001363 893 VFSDALNILVSS--GGDAQIFVWDVDG 917 (1092)
Q Consensus 893 ~~spdg~~l~s~--s~Dg~I~iwd~~~ 917 (1092)
..+..++.++++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 777777788877 7888888888875
No 415
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.47 E-value=8.5 Score=46.53 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=66.8
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCceeeEEe--cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceeeEeecc
Q 001363 808 FALSKNDAYLFSASGGVISLYIVMTFKTILTI--MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 884 (1092)
Q Consensus 808 ~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~ 884 (1092)
.|+.|...++.+|-+..+++||+...++++.. +.....|+.+.+. +..+++|...-.|.++..+. ++.+..+..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 46677777888888999999999877766543 3235667777774 55777777666665544332 233444432
Q ss_pred --ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 885 --HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 885 --h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
-...|+++.+- |-..+|.+..=|.+.+-.+..
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 22346666665 455777676666666555543
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.44 E-value=0.04 Score=39.45 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=29.3
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCe
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK 369 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~ 369 (1092)
..|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus 12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 4799999999998 8999999999999998 5543
No 417
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.35 E-value=0.073 Score=38.11 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=28.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEcc
Q 001363 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 426 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~ 426 (1092)
...|.+++|+|...+||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999993
No 418
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.15 E-value=5.3 Score=48.62 Aligned_cols=204 Identities=13% Similarity=0.106 Sum_probs=118.3
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeeEEecCCCCC--------eEEEEEcC---------------CCCCEEEEEeCCCcEE
Q 001363 813 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPT--------ATSLAFNP---------------HDNNVIAIGMDDSTIL 869 (1092)
Q Consensus 813 dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~d~~~lasg~~dg~v~ 869 (1092)
++.++++..++.|.-.|..+|+.+.++...... .+.+++.. ..+..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 454444444688888999999888776543211 12233321 0234788899999999
Q ss_pred EEEcCCceeeEeeccccCCeE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEEcCCCceeeee
Q 001363 870 IYNARSSEVISKLEGHSKRVT-------------GLVFSD--ALNILVSSGG----------DAQIFVWDVDGWGIQTCR 924 (1092)
Q Consensus 870 iwd~~~~~~~~~l~~h~~~V~-------------~l~~sp--dg~~l~s~s~----------Dg~I~iwd~~~~~~~~~~ 924 (1092)
-.|.++|+.+..+. ..+.|. .+.-+| .+..++.++. +|.|+-+|..+|+..-..
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99999999887664 222210 111112 1345555542 688999999998854322
Q ss_pred eeecCC-------CCcC--CCCCc-eEEEEccCCCEEEEE-------------------eCCcEEEEEcCCceeeeeecc
Q 001363 925 SLQTPD-------GVMT--LAPSE-THIQFHKDQTRFLLV-------------------HETHLAIYEAEELTCLKQWFP 975 (1092)
Q Consensus 925 ~~~~~~-------~~~~--~~~~v-~~l~~s~dg~~la~~-------------------~d~~i~lwd~~~~~~~~~~~~ 975 (1092)
-...+. +..- -...+ ...++.++..++... ..+.|.-.|.++|+..-.+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 111110 0000 00111 234555555554431 123466778888988766544
Q ss_pred CC--------CCCEEEEEEec-CCC---EEEEEECCCcEEEEEcCCCceEEeec
Q 001363 976 IS--------SVPISQATFSC-DCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 976 ~h--------~~~v~~l~fs~-dg~---~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
.| .....-+.+.. ||+ .++.++.+|.+++.|-.+|+.+....
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 33 11122223333 664 78899999999999999999987643
No 419
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.02 E-value=4.9 Score=41.24 Aligned_cols=192 Identities=11% Similarity=0.070 Sum_probs=112.6
Q ss_pred ccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001363 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
.-...+.|..+|..+-+++.-|.-.+ +.+++.+|+......++. ..--..++...|.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~~---~~FgEGit~~~d~ 101 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLPP---RYFGEGITILGDK 101 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-TT---T--EEEEEEETTE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECCc---cccceeEEEECCE
Confidence 34567888888888888877764333 334556666555555542 2333456666665
Q ss_pred CEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc-----CCe
Q 001363 815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-----KRV 889 (1092)
Q Consensus 815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~V 889 (1092)
-+.++--++...+||..+.+.+.++.- .+.=..++. |++.|+.......++++|..+-+....+.-.. ..+
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence 555566689999999999999988863 356667773 56677777767789999998877665554321 234
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC-------CCCcCCCCCceEEEEccCCCEEEEE
Q 001363 890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-------DGVMTLAPSETHIQFHKDQTRFLLV 954 (1092)
Q Consensus 890 ~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~v~~l~~s~dg~~la~~ 954 (1092)
.-|.|- +|...|=.=....|..-|..+|+.....-+..+ ........-...+|+.|.+..+.+.
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 446664 666666555556677777777765543222111 0111112357899998887766653
No 420
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.00 E-value=2.5 Score=46.18 Aligned_cols=188 Identities=13% Similarity=0.138 Sum_probs=94.8
Q ss_pred EEecCCCEEEEEe---C----CeEEEEEcCCceeeEEecCCC---CCeEEEEEcCCCCCEEEEEe---------------
Q 001363 809 ALSKNDAYLFSAS---G----GVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGM--------------- 863 (1092)
Q Consensus 809 ~~s~dg~~l~~~s---d----g~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~--------------- 863 (1092)
-.-|+|+.++++- + |.+.+.|-++.+......... ..-..+-+.| ..+.++|..
T Consensus 136 Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 136 HCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp EE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTT
T ss_pred eecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhH
Confidence 3446888887762 1 458899998888877765432 2345677788 667777743
Q ss_pred -----CCCcEEEEEcCCceeeEeecccc--CCeEEEEEcCC--CCE-EEEEeCCCcEEEE-EcCCCceeeeeeeecCCCC
Q 001363 864 -----DDSTILIYNARSSEVISKLEGHS--KRVTGLVFSDA--LNI-LVSSGGDAQIFVW-DVDGWGIQTCRSLQTPDGV 932 (1092)
Q Consensus 864 -----~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~spd--g~~-l~s~s~Dg~I~iw-d~~~~~~~~~~~~~~~~~~ 932 (1092)
...++.+||+.+.+.++++.--. .....+.|..+ ..+ ++.+.-...|..| .-+.++....+++..+...
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 23489999999999998886422 23556777654 444 3333334444444 4356665555566554321
Q ss_pred c------CC-------CCCceEEEEccCCCEEEEE--eCCcEEEEEcCCce---eeeeeccC-------C--------CC
Q 001363 933 M------TL-------APSETHIQFHKDQTRFLLV--HETHLAIYEAEELT---CLKQWFPI-------S--------SV 979 (1092)
Q Consensus 933 ~------~~-------~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~---~~~~~~~~-------h--------~~ 979 (1092)
. .. .+-|+.+.+|.|.++|.++ ..|.|+.||+.... ...++..+ | .+
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G 374 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG 374 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence 0 00 2358999999999999986 68999999997543 33222211 0 22
Q ss_pred CEEEEEEecCCCEEEEEE
Q 001363 980 PISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 980 ~v~~l~fs~dg~~l~t~~ 997 (1092)
...-+..|-||+.|...+
T Consensus 375 gPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 375 GPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTSSEEEEE-
T ss_pred CCCeEEEccCCeEEEEEe
Confidence 346678889998887654
No 421
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=0.077 Score=62.87 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=75.7
Q ss_pred cEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC
Q 001363 500 HFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 578 (1092)
..++.|+..|.+-..|+...-. ...-....++|++++|+.+|+.++.|-. +|.|.+||..+++..+.+..+....
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~----~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG----DGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC----CCcEEEEEccCCcceeeeeecCCcc
Confidence 4688888889888888765322 1222334568999999999999998865 6779999999999999888777445
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
..+..+.+..++..++++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 55666666667777788777775 5543
No 422
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.84 E-value=13 Score=45.13 Aligned_cols=122 Identities=12% Similarity=-0.033 Sum_probs=79.4
Q ss_pred EEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCC-CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC-ceEEeeccc
Q 001363 942 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILST 1019 (1092)
Q Consensus 942 l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~-~~~~~~~~~ 1019 (1092)
.|+.|-..++++|-...+++||+...+.++.....+ ...|+.+.+ .+..+++|...-+|.++..... +.+-.+. .
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa-d 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA-D 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe-C
Confidence 567777779999999999999999888777655444 566777765 4567777776666665554432 3332332 1
Q ss_pred cccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCccccCCCCCc
Q 001363 1020 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEI 1075 (1092)
Q Consensus 1020 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~ 1075 (1092)
...|.. |.. ++.- |-..+|.|..=|.+.+-.++..-++-+...|.+.
T Consensus 1016 D~~pR~-----Vt~---~~~l-D~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~~ 1062 (1205)
T KOG1898|consen 1016 DPVPRH-----VTA---LELL-DYDTVAGADRFGNIAVVRIPPDVSEEASEDPTEL 1062 (1205)
T ss_pred CCccce-----eeE---EEEe-cCCceeeccccCcEEEEECCCcchhhhccCCccc
Confidence 112211 222 2222 4578999999999999999877766655555553
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.76 E-value=7 Score=43.63 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=79.3
Q ss_pred CCeeEEEEecCCCEEEEEe------------C-CeEEEEEcCC--ce--eeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001363 803 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s------------d-g~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
.....|+|.++|+++++-. . +.|.+++-.+ |+ ....+.........+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 3456899999999887752 1 2677776442 32 2234443344568899998 77 444 4444
Q ss_pred CcEEEEEcCCc-----e--e-eEeecc----ccCCeEEEEEcCCCCEEEEEeCC-------------------CcEEEEE
Q 001363 866 STILIYNARSS-----E--V-ISKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD 914 (1092)
Q Consensus 866 g~v~iwd~~~~-----~--~-~~~l~~----h~~~V~~l~~spdg~~l~s~s~D-------------------g~I~iwd 914 (1092)
...++.|.... + . +..+.. +......++|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33334344321 1 1 122322 13346789999999988876621 3344444
Q ss_pred cCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
.++++. ..+. .+.. ....++|+++|+++++
T Consensus 171 pdg~~~---e~~a--~G~r----np~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKL---RVVA--HGFQ----NPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeE---EEEe--cCcC----CCccceECCCCCEEEE
Confidence 444331 1221 2222 3568999999999887
No 424
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.72 E-value=12 Score=45.34 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=56.2
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC-ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee
Q 001363 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1092)
....|..+.++|+|+++|..+...|.|..+.. +.....+.+....|.|=.+.- +..++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~-------------------- 141 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF-------------------- 141 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc--------------------
Confidence 44678999999999999999877777766632 111111222222222222211 11111
Q ss_pred EeeccccCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCC
Q 001363 880 SKLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spd---g~~l~s~s~Dg~I~iwd~~~ 917 (1092)
...+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 0123456777888875 47888888888899998875
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.51 E-value=0.88 Score=52.95 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=78.1
Q ss_pred ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEc-----
Q 001363 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY----- 516 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~----- 516 (1092)
...-+.-|.-++ ..+.-+....+.|||...+...++-. ...+.|.++.|...++++.+++.+..+.|.++--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344455555555 44444455689999999887554432 3578899999999999999999999999999843
Q ss_pred CCCCc----eE--EecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 517 DSLGA----RV--DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 517 ~~~~~----~~--~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
....+ +. .+.. ..++|...+|.++|..++.++. .+.++|..
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECCC
Confidence 11111 11 2222 3367889999999998887643 48888753
No 426
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.42 E-value=0.061 Score=62.14 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=83.8
Q ss_pred ecccCCCCceEEeec----CCCceEEEEEcCCCcEEEEecC--CCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001363 329 TLIEGSSSPMSMDFH----PVQHTLLLVGTNVGDTGLWDVN--SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~s----pdg~~llasg~~dg~i~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
.++|..++|-.++|- |.+. .+ -|...|||+. .|+......++ ....-...+.-+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~-~~-----vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR-RL-----VGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLV 186 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH-HH-----hhhhheeehHhhccccccceEEe--------------ecCcCCCCccee
Confidence 345777788888883 4443 12 2778899886 45444332222 123334455666
Q ss_pred EECC---CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEE-----------EecCCCcEEEEEEeCCCcEE
Q 001363 403 VWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA-----------FSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 403 ~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~-----------~s~d~~~l~l~s~~~d~~i~ 468 (1092)
.|.| +.-++..+-.+++|++-++.+... . -+.+|...+..++ .||||+ .++.+..||.++
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVG 260 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccc
Confidence 6665 667788888888888877765432 1 2446777666655 488999 899999999888
Q ss_pred EEECC-----CCceeEEEecCC
Q 001363 469 VWDAV-----TGSRTYSFEGHG 485 (1092)
Q Consensus 469 vwd~~-----~~~~~~~~~~~~ 485 (1092)
.|.+- .-+|++..+.|.
T Consensus 261 f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCC
Confidence 88643 335566677776
No 427
>PHA03098 kelch-like protein; Provisional
Probab=94.18 E-value=1.9 Score=51.29 Aligned_cols=154 Identities=8% Similarity=-0.024 Sum_probs=74.4
Q ss_pred CccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC--CceeEEEEeCCCCeEEEE
Q 001363 498 NIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 498 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~ 570 (1092)
++.+.+.|+.++ .+..||..+.+-...-..+.......+..-+++..+.||.... ....+..||+.+++....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 456777777652 4666776654322211111111111122345666666663222 125688999887655432
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
-.... ..... ++ ...++..++.|+.+ ..+.+||..+.+....-...........+. -+++.++.|+.
T Consensus 422 ~~~p~-~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCC
Confidence 21111 01111 22 22245555566532 238889988876554322211111111222 36777777765
Q ss_pred C-----CeEEEEECCCCce
Q 001363 643 E-----NRIKILETPESNS 656 (1092)
Q Consensus 643 d-----g~i~iw~~~~~~~ 656 (1092)
+ ..+.+||..+.+.
T Consensus 497 ~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred cCCcccceeEEEeCCCCEE
Confidence 4 4677788776543
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.05 E-value=1.1 Score=53.79 Aligned_cols=92 Identities=15% Similarity=0.247 Sum_probs=62.5
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEEcCC----------C--ceEEeecc-ccccCCCCccccccceEEEECCC--C
Q 001363 978 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------L--EVQCRILS-TAYLRPTTSCLHVYPHAIAAHPL--K 1042 (1092)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~----------~--~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~p~--d 1042 (1092)
.-.|..+.++++|++|+..|..| |.|-.+.. | ...|+..+ ...+-. .+..+....+.|||. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~--~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT--SNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc--CCCCceEEEEEEcCCCCC
Confidence 56788999999999999988765 55555532 1 22333321 111111 133355568899995 3
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCccccCCC
Q 001363 1043 PTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1072 (1092)
Q Consensus 1043 ~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~ 1072 (1092)
+..|++-+.|+++++||+.+...-|.+.+-
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v~~~ 190 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQVLSL 190 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeEEEEc
Confidence 578999999999999999887766777653
No 429
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.92 E-value=0.19 Score=49.05 Aligned_cols=106 Identities=12% Similarity=0.053 Sum_probs=63.5
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEE-EEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001363 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL-AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
-+..+++|+.+|.|.+|++..-...... ...-...|.++ .-..++. +..+++.|+.|+.|++.-++.+.....|.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHh--hhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeecccc
Confidence 3567899999999999998732111110 11112233333 2233444 67888999999999999988887776676
Q ss_pred -cCeEEEeecccCCccEEEEE--ecCCeEEEEEcCC
Q 001363 486 -APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS 518 (1092)
Q Consensus 486 -~~v~~i~~~~~~~~~~l~s~--~~dg~i~vwd~~~ 518 (1092)
.++...... ..+.+++.+ |.|..++.|++..
T Consensus 145 ~~~~e~~ivv--~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVV--GSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEe--cCCceEEeeccccchhhhhcchhh
Confidence 444333332 122455555 5566666665543
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.90 E-value=1.3 Score=51.49 Aligned_cols=122 Identities=8% Similarity=0.086 Sum_probs=76.3
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec-cccCCeEEEEEc--CCCCEEEEEeCCCcEEEEEc
Q 001363 839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWDV 915 (1092)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--pdg~~l~s~s~Dg~I~iwd~ 915 (1092)
+...-..++-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|. |||+.+++.|-.+.|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334455555555 45555555555589999999886432221 357889999985 78999999999999999864
Q ss_pred CC----CceeeeeeeecC--CCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEc
Q 001363 916 DG----WGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964 (1092)
Q Consensus 916 ~~----~~~~~~~~~~~~--~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~ 964 (1092)
.. ........++.. ..+.+ .+|....|.++|.++++ .++++.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV~-sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVVG-SGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEEE-eCCEEEEECC
Confidence 31 111111122221 12221 36889999999986654 4667888764
No 431
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.56 E-value=16 Score=41.45 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=42.0
Q ss_pred eEEEEccCCCEEEEEeC--CcEEEEEcCCc--eeeeeeccCCCCCEEEEEEecCCCEEEEEEC
Q 001363 940 THIQFHKDQTRFLLVHE--THLAIYEAEEL--TCLKQWFPISSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 940 ~~l~~s~dg~~la~~~d--~~i~lwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 998 (1092)
--+||.|....+|++++ +.|.||.+... ..+..+.-....+...++|-.|+-.|+..|.
T Consensus 342 DliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 342 DLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred ceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence 34899999999999655 57999998632 2233333334678888999988877776654
No 432
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.54 E-value=8.3 Score=39.12 Aligned_cols=192 Identities=12% Similarity=0.095 Sum_probs=124.0
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001363 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 924 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~ 924 (1092)
.-..++-+| ||..-+++...|.|--.|-.+|+....--+....-..+..-|||..-++-+.. .|.-.|-++.+...
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-- 138 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-- 138 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence 345677888 88888888888888888888888766555555666778888998877764433 45555665555333
Q ss_pred eeecCCCCcCCCCCceEEEEccCCCEEEEEeC----------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEE
Q 001363 925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 994 (1092)
Q Consensus 925 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d----------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 994 (1092)
...+..+.. .......|.++|++-.++.. +.|++|+.. .......|+..|||..-+
T Consensus 139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------CCCCCcceEECCCCcEEE
Confidence 222222222 35788999999999888543 235555543 344567789999999888
Q ss_pred EEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001363 995 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 995 t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
+.-.+..|..-|..++.. ..+.....+..+ +..+-.+|+ +..-++....+.++.+|....
T Consensus 205 aslagnaiaridp~~~~a-ev~p~P~~~~~g-------sRriwsdpi-g~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 205 ASLAGNAIARIDPFAGHA-EVVPQPNALKAG-------SRRIWSDPI-GRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred EeccccceEEcccccCCc-ceecCCCccccc-------ccccccCcc-CcEEEeccCCceeeEeCcccc
Confidence 877788888888777722 222222221111 122345553 567777777777777776543
No 433
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.46 E-value=3.2 Score=40.83 Aligned_cols=150 Identities=11% Similarity=0.095 Sum_probs=83.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE----eCC---cEEEE-EcC----C
Q 001363 899 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HET---HLAIY-EAE----E 966 (1092)
Q Consensus 899 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~----~d~---~i~lw-d~~----~ 966 (1092)
+.|+.+.....|.+|++...+......+.+. +.|..++++.-|++|++- ... .+++| ++. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 3444445667799999995554433333333 258899999999999993 122 46665 222 1
Q ss_pred ceeeeeeccCC---------------------CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCce-EEeeccccccCC
Q 001363 967 LTCLKQWFPIS---------------------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCRILSTAYLRP 1024 (1092)
Q Consensus 967 ~~~~~~~~~~h---------------------~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~-~~~~~~~~~~~~ 1024 (1092)
...++.-..|| +.++.+++-.|-..-|+.|+ ++.+.+|.+..... ...+....+...
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~ 180 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERS 180 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhh
Confidence 22222212232 44566666666433455454 56899998876655 222222222111
Q ss_pred C-CccccccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1025 T-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1025 ~-~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
. .|...+.+..+++- ++++|.. ++-.+++..+
T Consensus 181 l~~~~~~~~p~~v~ic---~~yiA~~-s~~ev~Vlkl 213 (215)
T PF14761_consen 181 LIDHIDNFKPTQVAIC---EGYIAVM-SDLEVLVLKL 213 (215)
T ss_pred hhheecCceEEEEEEE---eeEEEEe-cCCEEEEEEE
Confidence 1 13334556666666 3566665 5666777665
No 434
>PHA03098 kelch-like protein; Provisional
Probab=93.30 E-value=2.4 Score=50.31 Aligned_cols=196 Identities=11% Similarity=0.005 Sum_probs=91.1
Q ss_pred CCCCEEEEEeCCC------EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----CcEEEEECCC
Q 001363 406 PDGSLLGVAYSKH------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVT 474 (1092)
Q Consensus 406 pdg~~las~~~d~------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~ 474 (1092)
.++..++.|+.++ .+..||..+++-.. ...+.........+ .-+++ +++.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~--~~~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVT--VFNNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEE--EECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 3556666665432 47788887754321 11111111111222 23555 66667655 3577888877
Q ss_pred CceeEE--EecCCcCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001363 475 GSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 475 ~~~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
++-... +....... +++. -++.+.+.|+.+ ..+..||..+.+-...-..+.......+...+++..+.
T Consensus 368 ~~W~~~~~lp~~r~~~-~~~~---~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 368 SKWREEPPLIFPRYNP-CVVN---VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred CceeeCCCcCcCCccc-eEEE---ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence 653321 11111111 1111 144666766632 34777887654322211111111111223345666666
Q ss_pred EecCCCC----ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceE
Q 001363 547 CGTSKEG----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLL 613 (1092)
Q Consensus 547 ~~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~ 613 (1092)
||..... -..+.+||+.+++....-.... .......+.+ ++..++.|+.+ +.+.+||..+.+..
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCc-ccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 6543221 2348899988776543221111 1112222222 55566666643 46788888776553
No 435
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=1.3 Score=48.71 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=70.7
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEE---------cCCCc--eEEeeccccccCCCCccccccceEEEECCCC--CC
Q 001363 978 SVPISQATFSCDCRMVFTSFVDGTLSIHE---------ASNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAHPLK--PT 1044 (1092)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd---------~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d--~~ 1044 (1092)
.-.|..+..|+.|..++-.|.+|.+.++= +++|+ ..|+....+. .--.++.++....++|||+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccCCceeeeeccccCCccCCc
Confidence 45677888899999999999998554432 23343 2333321110 00012345666778999963 46
Q ss_pred EEEEEeCCCcEEEEecCCCCCccccCCCCCcccCCCCCCcccccC
Q 001363 1045 QFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRA 1089 (1092)
Q Consensus 1045 ~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1089 (1092)
.|+.-+.|..|++|++++....|..++|.-..+.-...-+=|+.+
T Consensus 182 hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn~Si~sFGe~~ 226 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTNVSILSFGEEE 226 (741)
T ss_pred eEEEEecCcEEEEEecCCcchhhccCCCcCCCCccceeeccCCcc
Confidence 788889999999999998888888876655444433333444443
No 436
>PRK13684 Ycf48-like protein; Provisional
Probab=92.97 E-value=17 Score=39.90 Aligned_cols=153 Identities=19% Similarity=0.164 Sum_probs=92.3
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEE-EcCCceeeEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee
Q 001363 802 QEAVPCFALSKNDAYLFSASGGVISLY-IVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iw-d~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1092)
...+.++.+.+++.+++++..|.+..- |- .++.-.. .......++++++.+ +++.+++| ..|.+++=..+.|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence 456788999999999988888865532 22 2222222 223446789999999 78777665 4676653234444322
Q ss_pred Eeecc----ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe
Q 001363 880 SKLEG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 880 ~~l~~----h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
..... -...+.++++.|++..++ ++.+|.|. ...+.++ ....+....+.. .....+.|..+++.++++.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~--tW~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK--TWEKDPVGEEVP---SNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC--CCeECCcCCCCC---cceEEEEEeCCCceEEECC
Confidence 21111 123578899999877655 55677554 4445433 111221111111 2477888888899999999
Q ss_pred CCcEEEEEc
Q 001363 956 ETHLAIYEA 964 (1092)
Q Consensus 956 d~~i~lwd~ 964 (1092)
.|.|--|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 898877763
No 437
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.96 E-value=5.5 Score=46.24 Aligned_cols=185 Identities=12% Similarity=0.137 Sum_probs=98.9
Q ss_pred eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe--e--ccccCCeEEEEEcCCCC
Q 001363 824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~spdg~ 899 (1092)
.|+||++. |..+..+.-..+.+..+.|+. ..-|++...+|++++|++.. +.+.. . +.....|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 37888874 555555443444888999996 45666788999999999874 32222 1 22233455566665664
Q ss_pred EEEEEeCCCcE-EEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCE--EEEEeC--CcEEEEEcCCceeeeeec
Q 001363 900 ILVSSGGDAQI-FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLVHE--THLAIYEAEELTCLKQWF 974 (1092)
Q Consensus 900 ~l~s~s~Dg~I-~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~--la~~~d--~~i~lwd~~~~~~~~~~~ 974 (1092)
.+.+. +|.+ .+-+++..... .+...++... .-.+....+++.. +...-+ -...++..+.+......+
T Consensus 141 avlt~--~g~v~~i~~~~~~~~~---~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEPKLR---KMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEec--CCcEEEEcCCCcchhh---hCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 44443 3333 33333331111 1111111111 1123333333221 111111 011222222221111111
Q ss_pred cCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001363 975 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 975 ~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
....+.+..+..||+.++|+--..+|.|.+-+.+..+..+.+....
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~ 258 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD 258 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC
Confidence 1113577889999999999999999999999999888888887433
No 438
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=3.4 Score=44.75 Aligned_cols=145 Identities=8% Similarity=0.041 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc--e-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001363 846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSS--E-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 922 (1092)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~ 922 (1092)
.+.+-|.. .++.|+ +...|.+.=|-.... . ++..-....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 34556654 333333 334455555655432 1 222222356799999999999999999999999999986543222
Q ss_pred eeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001363 923 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 923 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
........+. ..|....|+.. .-+|...+..+-+|-....+.--.....|...|.-..|.++-+.++-++
T Consensus 103 ~~~~~ck~k~----~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 103 EYTQECKTKN----ANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHHHhccCc----ceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 1111111111 24888888877 6666666777777776544333333556788888889999887655443
No 439
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.83 E-value=18 Score=39.91 Aligned_cols=228 Identities=10% Similarity=0.081 Sum_probs=101.3
Q ss_pred CCCEEEEEe-CCCEEEEEEccCCCcc-cceEEEcc---cc----cceeEEEEecCCCcEEEEEE--eC----CCcEEEEE
Q 001363 407 DGSLLGVAY-SKHIVQLYAYHGGSDA-RQQLEIDA---HV----GNVNDLAFSAPCKQISVITC--GD----DKTIKVWD 471 (1092)
Q Consensus 407 dg~~las~~-~d~~i~iwd~~~~~~~-~~~~~~~~---h~----~~v~~~~~s~d~~~l~l~s~--~~----d~~i~vwd 471 (1092)
+.++|+..+ .++.|+|.|+.+.... +..+.+.. +. ..-..+-.-|+|+ +++|+ +. -|-+.+.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~--imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR--IMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS----EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc--EEEEeccCCCCCCCCcEEEEc
Confidence 567888876 6678999999854321 11222221 11 1222344457888 56664 22 34578888
Q ss_pred CCCCceeEEEecCCc-C--eEEEeecccCCccEEEEEe--------------------cCCeEEEEEcCCCCceEEecCC
Q 001363 472 AVTGSRTYSFEGHGA-P--VYSLCPHAKENIHFIFSIS--------------------VDGKIKAWLYDSLGARVDYDAP 528 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~-~--v~~i~~~~~~~~~~l~s~~--------------------~dg~i~vwd~~~~~~~~~~~~~ 528 (1092)
-++-+.......... . -..+-+.+ ..+.++|.. ...++.+||+.+.+.++++...
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qp--r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQP--RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEET--TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred CccccccceeccCCCCCCCCCCeEEcC--CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 777777766644222 1 22333333 334566542 2457999999999988887765
Q ss_pred CC--ceEEEEEcc--CCCEEEEEecCCCCceeEEEEeC-CCCeEE----EEEeecc-----c---------cCCceEEEE
Q 001363 529 GL--GCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNE-SEGAIK----RTYQGLQ-----L---------QHNSVSVVH 585 (1092)
Q Consensus 529 ~~--~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~-~~~~~~----~~~~~~~-----~---------~~~~v~~~~ 585 (1092)
.. -...+.|.. +..+-+++.. -...|..|-. ..++-. ..+.... . -..-++.+.
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~a---Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~ 318 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCA---LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL 318 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE-----EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred CCCCceEEEEecCCCCccceEEEEe---ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence 43 344566644 4444443332 1334555543 333321 1111110 0 013478899
Q ss_pred EcCCCCEEEEEe-CCCcEEEEECCCC---ceEEEEeCCCCC--------------CCCceEEEccCCCEEEEEe
Q 001363 586 FDTAKDQILAAG-DDHVIKIWDMNKV---QLLTTIDAGGGL--------------PENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 586 ~~~~~~~l~~~s-~dg~i~iwd~~~~---~~~~~~~~~~~~--------------~~v~~v~~s~~~~~l~~~~ 641 (1092)
+|.|.++|+... .+|.|+.||+.+. ++...+...+.. .....+..|-||++|.+.+
T Consensus 319 iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 319 ISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp E-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 999999998765 7899999999763 334333322111 1124567777777776654
No 440
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.77 E-value=14 Score=38.46 Aligned_cols=214 Identities=12% Similarity=0.130 Sum_probs=123.4
Q ss_pred ceeEEEEecCCCcEEEEEEeCCCcEEEEECC------CC-ceeEEEec-----CCcCeEEEeecccC------C----cc
Q 001363 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TG-SRTYSFEG-----HGAPVYSLCPHAKE------N----IH 500 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~------~----~~ 500 (1092)
.-+.++|+|.+. +-++...-+...+||.. .. ..+-++.. .....+.+.|+... + ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999887 67777778889999986 12 22333331 12345555554321 1 12
Q ss_pred EEEEEecCCeEEEEEcCCCCc-----eEEecCC--CCceEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeEE--E
Q 001363 501 FIFSISVDGKIKAWLYDSLGA-----RVDYDAP--GLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK--R 569 (1092)
Q Consensus 501 ~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~--~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~--~ 569 (1092)
.++.+++||+|.-|...-... ...+... ..-...+++.. .+.+|+.+-. ..++|.++|-.-.... .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 478889999999997532222 1222211 22344556554 3567766643 2567888875432221 0
Q ss_pred EEeeccc--cCCc-----------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc----
Q 001363 570 TYQGLQL--QHNS-----------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---- 632 (1092)
Q Consensus 570 ~~~~~~~--~~~~-----------v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 632 (1092)
.+..... .-.+ |+...-.++...=+.|..-|.|-+||. .|+.++++...+....-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 0111000 0000 111111222222333445578999997 578888887666555667777755
Q ss_pred --CCCEEEEEeCCCeEEEEECCCCceeeeccc
Q 001363 633 --NGTLLAVIANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 633 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
.+.+|+---.||+|..+|..+++.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 467777777799999999998887766654
No 441
>PHA02790 Kelch-like protein; Provisional
Probab=92.33 E-value=5.6 Score=46.24 Aligned_cols=184 Identities=11% Similarity=-0.007 Sum_probs=93.6
Q ss_pred CCCEEEEEe-C-----CeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEEcCCce--eeE
Q 001363 813 NDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSE--VIS 880 (1092)
Q Consensus 813 dg~~l~~~s-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~--~~~ 880 (1092)
++.++++|+ + ..+..||..+.+-.. .+.........++ - ++.+.+.|+.++ .+..||..+++ .+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455555554 2 246778877654322 2222222222222 3 677888888643 67888876543 222
Q ss_pred eeccccCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCC
Q 001363 881 KLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~ 957 (1092)
.+.........+ .-+|+..+.||.++ .+..||..+++......+..+. -...+..-+|++.+.| |
T Consensus 348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--C
Confidence 332111111222 23688888888654 4678888776533322221111 1122334566666665 4
Q ss_pred cEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCce
Q 001363 958 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1012 (1092)
Q Consensus 958 ~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~ 1012 (1092)
.+.+||..+.+-...-...+...-.++ ..-+|+..+.||.+ .++..||..+++.
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNPEL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCccccEE-EEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 577888876654322111111111122 23477888888764 3466777666544
No 442
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.27 E-value=14 Score=39.44 Aligned_cols=170 Identities=10% Similarity=0.062 Sum_probs=94.4
Q ss_pred eEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCC----CEEEEEe-CCCcEEEEEcCCceeeEeeccc-------
Q 001363 824 VISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAIGM-DDSTILIYNARSSEVISKLEGH------- 885 (1092)
Q Consensus 824 ~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~lasg~-~dg~v~iwd~~~~~~~~~l~~h------- 885 (1092)
+|.+||+.+.+.++++.-+ ......+.+...++ .++..+. ..+-+.|+|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6889999999988876432 34567777765222 2444333 3358999999998754444322
Q ss_pred ------------cCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCceeee-----e----eeecCCCCcCCCCCceE
Q 001363 886 ------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQTC-----R----SLQTPDGVMTLAPSETH 941 (1092)
Q Consensus 886 ------------~~~V~~l~~sp---dg~~l~s~s~Dg~I~iwd~~~~~~~~~-----~----~~~~~~~~~~~~~~v~~ 941 (1092)
.+.+..++.+| |+++|....-.+ -++|.+.+...... . .++.. +... .....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKG--SQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccC--CCCce
Confidence 13366677765 666776665444 34555443111110 0 00110 0000 13567
Q ss_pred EEEccCCCEEEE-EeCCcEEEEEcCCce---eeeeecc-CC-CCCEEEEEEec--CCCEEEEEE
Q 001363 942 IQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWFP-IS-SVPISQATFSC--DCRMVFTSF 997 (1092)
Q Consensus 942 l~~s~dg~~la~-~~d~~i~lwd~~~~~---~~~~~~~-~h-~~~v~~l~fs~--dg~~l~t~~ 997 (1092)
++++++|.+..+ ...+.|..|+..+.- ....+.. .. -..+..+.+.+ +|.+.+.+.
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 899999998888 578899999987521 1122121 12 35678888888 777666553
No 443
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.23 E-value=21 Score=40.00 Aligned_cols=201 Identities=11% Similarity=0.005 Sum_probs=105.2
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCceeeEEecCCC--CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc-
Q 001363 810 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS- 886 (1092)
Q Consensus 810 ~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~- 886 (1092)
...|++.++...+|.+.-.|..+++.+....... ..+..-.+.. +|+ ++.++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4456776666667888888888887665433221 2333333333 565 6778889999999998999888777555
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe--CCcEEEEEc
Q 001363 887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA 964 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--d~~i~lwd~ 964 (1092)
-.+..-..-.++..++ .+.++.+.-.+-.+++..-.......... .+..-....++...+... ++.+.-.|.
T Consensus 143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence 1122222222332222 23566666666665543221111110000 011111133444444433 445666677
Q ss_pred CCceeeeeeccCCCCCEE---EEEEec-----CCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 965 EELTCLKQWFPISSVPIS---QATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~---~l~fs~-----dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
.+|.........+...-+ ...... .+.-+..++.++.+.-.+..+|+.+.++..
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 777666542211111100 011111 112235666778888889999999888774
No 444
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.02 E-value=4.6 Score=45.11 Aligned_cols=103 Identities=9% Similarity=0.116 Sum_probs=56.6
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEEcCCC--ceeeeeeeecCCCCcCCCCCceEEEEccCCCEEE
Q 001363 887 KRVTGLVFSDALNILVSSG-----------GDA-QIFVWDVDGW--GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s-----------~Dg-~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 952 (1092)
.....|+|.++|+++++-. ..+ .|.+++-..+ .......+.. +. .....+++.++| +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--~l----~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--EL----SMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--CC----CCccceeEecCC-EEE
Confidence 3466789999998887653 223 5767765432 2222222221 11 135789999999 555
Q ss_pred EEeCCcEEEE-EcCC-------ceeeeeeccC----CCCCEEEEEEecCCCEEEEEE
Q 001363 953 LVHETHLAIY-EAEE-------LTCLKQWFPI----SSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 953 ~~~d~~i~lw-d~~~-------~~~~~~~~~~----h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
+. ...|..| |... .+.+..-+.. +......++|.|||.+.++-+
T Consensus 87 ~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 87 AT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 43 3445544 4431 1112221211 134477899999998777655
No 445
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=7.8 Score=37.57 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=61.1
Q ss_pred CCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeE--EEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccC
Q 001363 813 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTAT--SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 887 (1092)
Q Consensus 813 dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~--~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 887 (1092)
+|.++.+.+ ...|++||+.+++.+..-.-....+. .+.-. ++.+.+-...+|.-..||..+-+++..+. -.+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 556666665 35699999999988765432221111 11111 33445556778999999999988877765 333
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 888 RVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 888 ~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
.=+.++ .|++-|+.++...+++.-|.++
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHH
Confidence 344444 3666677665555666666554
No 446
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.24 E-value=29 Score=38.84 Aligned_cols=150 Identities=8% Similarity=0.024 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee---
Q 001363 846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--- 921 (1092)
Q Consensus 846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~--- 921 (1092)
...+..++ |+.+++++..-..++-||--... .... ..-...++++.|.+++.+++.+ .+|.+ +|....+..-
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHN-RASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEec-CCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 34456677 77777766543333334332110 1111 2234568999999998887755 56654 4444443211
Q ss_pred eeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeec--cCCCCCEEEEEEecCCCEEEEEECC
Q 001363 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFVD 999 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~t~~~D 999 (1092)
....+...... ..+.++.|.+++..++++..|.+.... ..|+.-.... ..-......+.|.++++.+++| .+
T Consensus 317 ~f~~~~~~~~~----~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~ 390 (398)
T PLN00033 317 DFEEADIKSRG----FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-ND 390 (398)
T ss_pred ceeecccCCCC----cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CC
Confidence 11111111111 147899999999999999888776654 3444332222 2224578899998888777755 67
Q ss_pred CcEEEE
Q 001363 1000 GTLSIH 1005 (1092)
Q Consensus 1000 g~i~vw 1005 (1092)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 877654
No 447
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.23 E-value=0.31 Score=56.68 Aligned_cols=179 Identities=17% Similarity=0.188 Sum_probs=101.1
Q ss_pred CeEEEEEcC--CceeeEE-----ecCCCCCeEEEEEcCC--CCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEE
Q 001363 823 GVISLYIVM--TFKTILT-----IMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 893 (1092)
Q Consensus 823 g~i~iwd~~--~~~~~~~-----~~~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 893 (1092)
|.+.|||+. .|+.... .......+.-+.|.|. +.-++..+..++++++....+... ..+.+|+..++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 678888875 3433222 2222233344444431 456778888889999877765432 55566887776654
Q ss_pred -----------EcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC---------CEEEE
Q 001363 894 -----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ---------TRFLL 953 (1092)
Q Consensus 894 -----------~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg---------~~la~ 953 (1092)
.||||+.+|.++.||.++.|.+.--.....+++..-+.|.. .+-.|.-|.... .++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence 48999999999999999999876433333334444333332 122222233322 22334
Q ss_pred EeC--CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC------------EEEEEECCCcEEEEEcC
Q 001363 954 VHE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR------------MVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 954 ~~d--~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~------------~l~t~~~Dg~i~vwd~~ 1008 (1092)
+.| ..+++|.....+|+.... ...|..+. -+||+ .+++.+-|++|.+|.-.
T Consensus 310 ttd~nre~k~w~~a~w~Cll~~~---~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCLLDKL---IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cccCCcceeEeeccchhhhhhhc---ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 433 458999887777762211 12333333 33332 13445667888888533
No 448
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=91.21 E-value=36 Score=43.94 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=86.5
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.|-..++.|.-+|+|.++=+ .|+.++.||..++. |... -.....+++.++-.-||+..
T Consensus 360 aH~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lY 417 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLY 417 (1774)
T ss_pred HHHHHhhccccCCCCCeEEe---ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceE
Confidence 46667788888888875322 56778888776542 2210 01123455556666677766
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC------ce--eEEEec
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SR--TYSFEG 483 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~------~~--~~~~~~ 483 (1092)
| =+.+ .+-|+..+..-. ..-..|.+...+++|.- .+.++-....+.+|++... ++ .-.+.+
T Consensus 418 A-k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d 486 (1774)
T PF11725_consen 418 A-KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD 486 (1774)
T ss_pred e-cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence 6 2222 234555543111 12235777888999982 3566666667799998754 11 122233
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~ 518 (1092)
-.....++.++ + ..|+.+..+|.+..=++..
T Consensus 487 G~a~A~~VgLs--~--drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 487 GKAQAQSVGLS--N--DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred Cchhhhheeec--C--CeEEEEeCCCCEEeccccc
Confidence 33345566663 2 2688889999888776654
No 449
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.13 E-value=6.5 Score=46.50 Aligned_cols=176 Identities=13% Similarity=0.087 Sum_probs=93.7
Q ss_pred CCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEE
Q 001363 814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 893 (1092)
Q Consensus 814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 893 (1092)
+.+++++..+.|.||+........ ...++..+...| .. +...|+.+..|. . .|+-.-..+.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p--~--------PHtIN~i~v~ 109 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP--F--------PHTINFIKVG 109 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC--C--------CceeeEEEec
Confidence 788888999999999986432211 011112222222 11 122344333332 1 1221111122
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCc---------ee--eeeeeecCCCCcCCCCCceEEEEc--cCCCEEEEEeCC-cE
Q 001363 894 FSDALNILVSSGGDAQIFVWDVDGWG---------IQ--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET-HL 959 (1092)
Q Consensus 894 ~spdg~~l~s~s~Dg~I~iwd~~~~~---------~~--~~~~~~~~~~~~~~~~~v~~l~~s--~dg~~la~~~d~-~i 959 (1092)
.--+...|+.+.+||.|.+|.++.-- .. .......+.-........+++++. ...++||+++++ .|
T Consensus 110 ~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 110 DLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEV 189 (717)
T ss_pred ccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceE
Confidence 22345678888888888888653200 00 000000011111112468899998 888999997664 46
Q ss_pred EEEEcCC--ceeeeeeccCCCCCEEEEEEecCC---C---EEEEEECCCcEEEEEcC
Q 001363 960 AIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 960 ~lwd~~~--~~~~~~~~~~h~~~v~~l~fs~dg---~---~l~t~~~Dg~i~vwd~~ 1008 (1092)
.||-... .+....-...|...|-++.|-++. . +|++++-.|.+-+|++.
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 6654433 221111112356778899997754 2 78888899999988873
No 450
>PHA02790 Kelch-like protein; Provisional
Probab=91.07 E-value=9.5 Score=44.36 Aligned_cols=149 Identities=9% Similarity=-0.022 Sum_probs=73.0
Q ss_pred CccEEEEEecCC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 498 NIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 498 ~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
++.+.+.|+.++ .+..||..+.+-...-..+.......+..-+|+..+.||.+.. ...+..||+.+.+-...-.-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC
Confidence 556667777543 4677776543222111111111122223446776677665432 3567889988776543211111
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEE
Q 001363 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILE 650 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~ 650 (1092)
.......+ .-++...+.| |.+.+||..+.+....-...... ...-+..-+++..++|+.+ ..+..||
T Consensus 397 -~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r--~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 397 -PHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPR--DNPELIIVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred -ccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCc--cccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence 01111222 2244444445 35778998877665433222111 1112222367777877754 3566777
Q ss_pred CCCCc
Q 001363 651 TPESN 655 (1092)
Q Consensus 651 ~~~~~ 655 (1092)
..+++
T Consensus 469 ~~~~~ 473 (480)
T PHA02790 469 NRTYS 473 (480)
T ss_pred CCCCe
Confidence 66553
No 451
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.02 E-value=22 Score=37.09 Aligned_cols=205 Identities=14% Similarity=0.124 Sum_probs=116.0
Q ss_pred eeEEEEecCCCEEEEEeC-CeEEEEEcC-------CceeeEEecC-----CCCCeEEEEEcCCCCCE------------E
Q 001363 805 VPCFALSKNDAYLFSASG-GVISLYIVM-------TFKTILTIMP-----PSPTATSLAFNPHDNNV------------I 859 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~sd-g~i~iwd~~-------~~~~~~~~~~-----~~~~i~~l~~s~~d~~~------------l 859 (1092)
-..++++|.+.+.++... +...+||.. ...++.++.. .....+.+.|+. ...+ +
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence 457999999877766654 889999986 1223334432 123567777764 2223 4
Q ss_pred EEEeCCCcEEEEEcCCcee-----eEeec-cccCCeE-EEEEcCC--CCEE-EEEeCCCcEEEEEcCCCceeeeeeee--
Q 001363 860 AIGMDDSTILIYNARSSEV-----ISKLE-GHSKRVT-GLVFSDA--LNIL-VSSGGDAQIFVWDVDGWGIQTCRSLQ-- 927 (1092)
Q Consensus 860 asg~~dg~v~iwd~~~~~~-----~~~l~-~h~~~V~-~l~~spd--g~~l-~s~s~Dg~I~iwd~~~~~~~~~~~~~-- 927 (1092)
+.+++||+|.=|...-+.. ...+. +-.+.|+ .+++... +.+| ++--..++|.|+|-.-......-...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 5678999999998533221 11222 1123343 4666533 3444 44456788999876542211000000
Q ss_pred -cCCCCcCCCCCceEEEEccCCCEEEE-E-------------eCCcEEEEEcCCceeeeeec-cCCCCCEEEEEEec---
Q 001363 928 -TPDGVMTLAPSETHIQFHKDQTRFLL-V-------------HETHLAIYEAEELTCLKQWF-PISSVPISQATFSC--- 988 (1092)
Q Consensus 928 -~~~~~~~~~~~v~~l~~s~dg~~la~-~-------------~d~~i~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~--- 988 (1092)
.+.+..+ ..+. .-.+++.++ + .-|.|-+||.. |..++++. .+.-...+.|+..|
T Consensus 184 ~iPagyAP-----FnIq-nig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 184 ALPAGYAP-----FNVQ-NLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCCCCCCC-----cceE-EECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhh
Confidence 0111100 0110 012333333 2 23579999985 66666543 23345566777755
Q ss_pred ---CCCEEEEEECCCcEEEEEcCCCceEEeec
Q 001363 989 ---DCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 989 ---dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
.|.+|+---.||+|-.+|..+|+.+..+.
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 57788877789999999999999887776
No 452
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.76 E-value=29 Score=37.97 Aligned_cols=71 Identities=8% Similarity=-0.060 Sum_probs=36.2
Q ss_pred CccEEEEEecC-----CeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001363 498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 498 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
++.+.+.|+.. ..+..||+.+.+-...-.... ......+...+++..+.++.++.....+..||+.+.+-.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 44566666642 346777776544222111111 122233344566777777654322234678898876643
No 453
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.39 E-value=12 Score=33.81 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=68.4
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEE---eeeeeeecccccceeeEeeecCCCCcEEEEEECC-----CCCEE
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSLL 411 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~---~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-----dg~~l 411 (1092)
-.|..... -|++++..|.|.|++......... ..++ +-.-...|++++-.+ +...|
T Consensus 4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~---------------~LNin~~italaaG~l~~~~~~D~L 67 (136)
T PF14781_consen 4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDIS---------------FLNINQEITALAAGRLKPDDGRDCL 67 (136)
T ss_pred EEeCCCce-eEEEEecCCEEEEECCCccccccccccCcee---------------EEECCCceEEEEEEecCCCCCcCEE
Confidence 34555554 467777889999998765432211 0111 112345777776443 34567
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC---CCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+.|+.. .+..||++....+. .+.-...|.++.+-.- ... +++ .+.+..|.-+|.+..+...+
T Consensus 68 liGt~t-~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~-l~i-vGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 68 LIGTQT-SLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSP-LVI-VGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred EEeccc-eEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCc-EEE-ECceEEEEEeCCCCcEEEEE
Confidence 777655 59999999876554 3344566777776321 121 344 44477888888555444443
No 454
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.38 E-value=34 Score=38.26 Aligned_cols=150 Identities=9% Similarity=0.005 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCce
Q 001363 889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT 968 (1092)
Q Consensus 889 V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~ 968 (1092)
...+..++||.+++.+..-..++-||-.... ...+..... ..+.++.|.+++.+++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 4456677888777765443333334432210 112222221 2588999999999999887777544 333443
Q ss_pred -----eeeeeccC-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCC
Q 001363 969 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus 969 -----~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1042 (1092)
........ -...+..+.|.+|+..+++| ..|.+... .+.|+..........++. .+| .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~-----~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAA-----NLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCc-----cee--EEEEcC--
Confidence 12211111 12458899999888766654 67866654 456655444331122222 244 666664
Q ss_pred CCEEEEEeCCCcEEEE
Q 001363 1043 PTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 1043 ~~~l~~~~~dg~v~~w 1058 (1092)
++...+.+.+|.|.-|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 3556666688887655
No 455
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.21 E-value=35 Score=38.13 Aligned_cols=199 Identities=16% Similarity=0.118 Sum_probs=104.7
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc-CeE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-PVY 489 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~ 489 (1092)
+.++..+|.|.-.|.+++..+-..... +....+..-.+..+|+ ++.++.++.+...|..+|+.+........ .+.
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 333456777777777776532111011 1112233333344776 77788899999999889999888766551 111
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001363 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
.-.+ .....+..++.+|.+...+..++.......... ..+..-....++. ++.+... . +..+.-.|..+|.
T Consensus 147 ~~~v---~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~~~G~ 220 (370)
T COG1520 147 SPPV---VGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNAEDGT 220 (370)
T ss_pred cCcE---EcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEccCCc
Confidence 1111 112244444467888877777777666543322 1111111122333 3333221 1 3357777887887
Q ss_pred EEEEEeeccccC-CceEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 001363 567 IKRTYQGLQLQH-NSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 567 ~~~~~~~~~~~~-~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1092)
..-......... ..+........ +..++.++.++.+...|..+++.+......
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 766543222000 00100001001 223456777888999999999999888754
No 456
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.17 E-value=38 Score=38.43 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=41.8
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
++...-+..+.|+|.|||+ +|++--..|.|++++..++.......+ ..............|+|+|+-
T Consensus 24 ~va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 3344445889999999997 677654469999998665543211111 000011136778899999874
No 457
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.14 E-value=20 Score=41.90 Aligned_cols=164 Identities=12% Similarity=0.139 Sum_probs=78.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccce-EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001363 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
.+..+.|+.+..+|+ ...+|++++|++.... +... .-.......|..+.|..+|= .+.+ .+|.+.+-+-....
T Consensus 85 ~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt--~~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELIC-VQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLT--VSGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCceEEE-EeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEe--cCCcEEEEcCCCcc
Confidence 888999997766555 5699999999987532 2210 00122333466666666553 3333 34444443312221
Q ss_pred eeEEEec-CCcCeEEEeecccCC---ccEEEEEe-cCCeEEEEEcCCCC-ceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 477 RTYSFEG-HGAPVYSLCPHAKEN---IHFIFSIS-VDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 477 ~~~~~~~-~~~~v~~i~~~~~~~---~~~l~s~~-~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
.++++.. ........+|....+ ...++-.. ..+ ..++...... ....+......+..+++||+.++|+.-..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~- 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE- 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec-
Confidence 2222221 111111112211111 11111111 000 0111111111 12223333457788999999999988765
Q ss_pred CCCceeEEEEeCCCCeEEEEEe
Q 001363 551 KEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
.|.|.+-+....+....+.
T Consensus 237 ---~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 237 ---TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ---CCcEEEEecchhhhhhccC
Confidence 4557777766666655555
No 458
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.11 E-value=28 Score=37.05 Aligned_cols=167 Identities=11% Similarity=0.071 Sum_probs=88.8
Q ss_pred cEEEEECCCCceeEEEecC------CcCeEEEeecccCC----ccEEEEEecCCeEEEEEcCCCCceEEecCCC------
Q 001363 466 TIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------ 529 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------ 529 (1092)
.|.+||+.+++.++++.-. ...++.+.+...+. +...++-+..+-|.|+|+.+++.........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6888999999988777532 34566777655332 2334444555689999998876544332211
Q ss_pred -------------CceEEEEEcc---CCCEEEEEecCCCCceeEEEEeCCC-----Ce---------EEEEEeeccccCC
Q 001363 530 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESE-----GA---------IKRTYQGLQLQHN 579 (1092)
Q Consensus 530 -------------~~i~~~~~s~---dg~~l~~~~~~~~~~~~i~iwd~~~-----~~---------~~~~~~~~~~~~~ 579 (1092)
..+..++.+| +|+.|+.....+ -.+|.+.+ .. .++.+ +.. ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence 1245556654 666666554322 12222111 00 11111 221 13
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceEEEEe-CCCCCCCCceEEEcc--CCCEEEEE
Q 001363 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTID-AGGGLPENPRICFNK--NGTLLAVI 640 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~-~~~~~~~v~~v~~s~--~~~~l~~~ 640 (1092)
....++++++|..+++--..+.|..|+..+. +....+. .......+..+.+.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 5667888999888888889999999998861 1222222 222133456777777 55544433
No 459
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.03 E-value=17 Score=45.50 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=96.5
Q ss_pred eCCCcEEEEEcCCceeeEeeccccCCeEEEEE--------cCCCCEEEEEeCCCcEEEEEcCCCceeeeee-eecCCCCc
Q 001363 863 MDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCRS-LQTPDGVM 933 (1092)
Q Consensus 863 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--------spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~-~~~~~~~~ 933 (1092)
+-|+.+.+|+.+++.....+.+-+..|..+.. -|.=++|...+.--.|.|+-+.-.+...... ....-...
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999998878888877777777654 2333555555556667777655433221110 00000000
Q ss_pred CCCCCceEEEEccCCCEEEEEeCCcEEE--EEcCCc---e-ee----------------eeeccCCCCCEEEEEEecCCC
Q 001363 934 TLAPSETHIQFHKDQTRFLLVHETHLAI--YEAEEL---T-CL----------------KQWFPISSVPISQATFSCDCR 991 (1092)
Q Consensus 934 ~~~~~v~~l~~s~dg~~la~~~d~~i~l--wd~~~~---~-~~----------------~~~~~~h~~~v~~l~fs~dg~ 991 (1092)
..+..|.++....+|+.+.+|.||.|+= |....| + |. ..+...+..+|..++....-.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 1113588899899999999999985442 222221 1 10 111124577999999988888
Q ss_pred EEEEEECCCcEEEEEcCC-CceEEee
Q 001363 992 MVFTSFVDGTLSIHEASN-LEVQCRI 1016 (1092)
Q Consensus 992 ~l~t~~~Dg~i~vwd~~~-~~~~~~~ 1016 (1092)
.|.+-+..|+|++|++.. |....++
T Consensus 256 IlY~lsek~~v~~Y~i~~~G~~~~r~ 281 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGNGLGGPRF 281 (1311)
T ss_pred eeeeeccCceEEEEEccCCCccceee
Confidence 899999999999999987 5444333
No 460
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.79 E-value=0.91 Score=31.49 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=26.6
Q ss_pred CCceEEeecCCCc--eEEEEEcCCCcEEEEecCCC
Q 001363 335 SSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSG 367 (1092)
Q Consensus 335 ~~V~~v~~spdg~--~llasg~~dg~i~iwd~~~~ 367 (1092)
+.|.++.|||+.. .||+..-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3689999997543 47888878899999999864
No 461
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.67 E-value=62 Score=40.18 Aligned_cols=174 Identities=15% Similarity=0.152 Sum_probs=103.3
Q ss_pred CCCCeeEEEEe---c----CCCEEEEEeCCeEEEEEcCCc---------------eeeEEecC---CCCCeEEEEEcCCC
Q 001363 801 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD 855 (1092)
Q Consensus 801 ~~~~v~~~~~s---~----dg~~l~~~sdg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d 855 (1092)
...+|..|+|+ . ..++|++-....+.|+...-. ..+..+.. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 45678888887 2 235788777778888772211 12223321 12355678888877
Q ss_pred CCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001363 856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
...+|+....|...||++..+... +.. . +-+.....|.| +.|...-
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~~-~----------~~~~~~~~gsi-~~d~~e~----------------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKR-----KSS-N----------LRLSRNISGSI-IFDPEEL----------------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEecccccc-----CCc-c----------eeeccCCCccc-cCCCccc-----------------
Confidence 778888888888888888221100 000 1 11112222333 2222210
Q ss_pred CCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeee-eeccCCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCC
Q 001363 936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~-~~~~~h~~~v~~l~fs~dg-~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
..-..+.|.++-..|++.+...+.++|+.+..... .........|..+.-+++. .+++.- ....|...++...
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 12457889999899999888999999998776643 2233346788888888872 233222 2356888888773
No 462
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.62 E-value=33 Score=38.42 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=18.7
Q ss_pred EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
+.+||.++.+....-..+.. .....+..-+++++++|+.
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~ 352 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGE 352 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCC
Confidence 45788877654322222111 1122233345667777765
No 463
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.56 E-value=3.3 Score=50.12 Aligned_cols=147 Identities=11% Similarity=0.037 Sum_probs=90.3
Q ss_pred ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-----EEEec----CC--cCeEEEeecccCCccEEEEEecCCeE
Q 001363 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----YSFEG----HG--APVYSLCPHAKENIHFIFSISVDGKI 511 (1092)
Q Consensus 443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-----~~~~~----~~--~~v~~i~~~~~~~~~~l~s~~~dg~i 511 (1092)
+|..+..++|+....++..+.+-.|..+|+++-..- .-+.. .. ....++.|+|... ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566777778877545555566557889998743211 11111 11 2234455655433 245667788888
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc-CCceEEEEEcCCC
Q 001363 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAK 590 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~ 590 (1092)
++..+........--.-....++++|+|.|+.++.+-. .+++.-|.. +++....+.+.... ...|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeec-ccceeecccCCCcCCCcceeEEEEecce
Confidence 88766544333332233456899999999999999864 556766654 34444555444322 3679999998877
Q ss_pred CEEEE
Q 001363 591 DQILA 595 (1092)
Q Consensus 591 ~~l~~ 595 (1092)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 76665
No 464
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.43 E-value=13 Score=41.03 Aligned_cols=150 Identities=9% Similarity=0.097 Sum_probs=92.2
Q ss_pred EEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccC------CccEEEEEecCCeEEEEEcCCC
Q 001363 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSL 519 (1092)
Q Consensus 446 ~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~------~~~~l~s~~~dg~i~vwd~~~~ 519 (1092)
.+-...+.+.+++..|+....++--|++.|+.+..+..|...| +.+.|.. +.+.|+-.+ +..|.-.|.+..
T Consensus 471 K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~ 547 (776)
T COG5167 471 KIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRAR 547 (776)
T ss_pred hceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeec-ccceEEeccccc
Confidence 3334444444567778888889999999999999998887764 3343321 223455444 444444565544
Q ss_pred CceEEecCCCC-----ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEE
Q 001363 520 GARVDYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1092)
Q Consensus 520 ~~~~~~~~~~~-----~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 594 (1092)
........... ...+..- ...-++++++..++ |++||.-.......+.+.. ..|..+..+.+|.+++
T Consensus 548 gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGD----irLyDRig~rAKtalP~lG---~aIk~idvta~Gk~il 619 (776)
T COG5167 548 GNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGD----IRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHIL 619 (776)
T ss_pred CCceeeeeehhcccccccccccc-ccCceEEEecCCCc----eeeehhhcchhhhcCcccc---cceeeeEeecCCcEEE
Confidence 43222211111 1222222 23457888876443 9999976666656666655 7899999999999998
Q ss_pred EEeCCCcEEEEEC
Q 001363 595 AAGDDHVIKIWDM 607 (1092)
Q Consensus 595 ~~s~dg~i~iwd~ 607 (1092)
+.+. ..+.+-|+
T Consensus 620 aTCk-~yllL~d~ 631 (776)
T COG5167 620 ATCK-NYLLLTDV 631 (776)
T ss_pred Eeec-ceEEEEec
Confidence 8775 34555554
No 465
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.30 E-value=2.1 Score=46.19 Aligned_cols=122 Identities=11% Similarity=0.153 Sum_probs=80.8
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
+++|.++.||+|.+ ++|+--.+++|.+.+....+.......+ ....+..|....|+.. .-+|.
T Consensus 66 ~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~---------------ck~k~~~IlGF~W~~s-~e~A~ 128 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQE---------------CKTKNANILGFCWTSS-TEIAF 128 (657)
T ss_pred CCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHH---------------hccCcceeEEEEEecC-eeEEE
Confidence 45999999999998 8999999999999998554433221111 2224456888899865 67777
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
....| +.+|-+...+ +.....+.|...|..-.|.++.+-.+|+|+-..+++.=+-+.++
T Consensus 129 i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 129 ITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 77776 7788776432 22224557888999999999988533344324444443444433
No 466
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.12 E-value=46 Score=37.87 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=48.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
...+|.++.+...|.+ -+|+.|| +..||..+++.++.. ......+|.++.-+-.|+ +..|+.+| |.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~l-WvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGRL-WVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCcE-EEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 3468889999888854 4567787 788888887655421 112335677777777777 67777555 67777555
No 467
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.09 E-value=1.4 Score=30.57 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=26.5
Q ss_pred CcEEEEEECCC-C--CEEEEEeCCCEEEEEEccCC
Q 001363 397 VSVNRVVWSPD-G--SLLGVAYSKHIVQLYAYHGG 428 (1092)
Q Consensus 397 ~~V~~l~~spd-g--~~las~~~d~~i~iwd~~~~ 428 (1092)
+.|.+++|||+ + .+|+.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46889999984 4 58888888899999999863
No 468
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.86 E-value=24 Score=34.38 Aligned_cols=175 Identities=15% Similarity=0.087 Sum_probs=94.6
Q ss_pred EEEEEeCC--CcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001363 457 SVITCGDD--KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 534 (1092)
Q Consensus 457 ~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 534 (1092)
++.+.+.- ..|++||+.+|+.+.+-.-....+..=-....+| .+-.-.=.+|.-..+|.++.++.-.+...+.. .
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-W- 134 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-W- 134 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCcc-e-
Confidence 56666543 3699999999998866543211111111100111 22333446777788888887776655444322 2
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc--ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1092)
....|++.|+.+ ++..+++.-|+.+-....++.... .....++-+.|- +|...+-.-.+..|...+.++|+.
T Consensus 135 -gLt~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 135 -GLTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred -eeecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 234566666665 346678888887665544433221 001222333332 344444444555666677788877
Q ss_pred EEEEeCCC----------CCCCCceEEEccCCCEEEEE
Q 001363 613 LTTIDAGG----------GLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 613 ~~~~~~~~----------~~~~v~~v~~s~~~~~l~~~ 640 (1092)
+..+...+ +....+.+++.|++..+...
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 76665331 12235678898877444433
No 469
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.85 E-value=5 Score=49.75 Aligned_cols=172 Identities=14% Similarity=0.184 Sum_probs=101.0
Q ss_pred cccCCCcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001363 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
.+..+|+..+..+. |...-+.+-+-|.=.+ |--+.|+.+.+|+.+++..... +.+-..
T Consensus 63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sh 120 (1311)
T KOG1900|consen 63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSH 120 (1311)
T ss_pred ccccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence 45667776666655 4434445555554433 3335789999999999665432 233344
Q ss_pred cEEEEE--------ECCCCCEEEEEeCCCEEEEEEccCCCcccce------EEEcccccceeEEEEecCCCcEEEEEEeC
Q 001363 398 SVNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1092)
Q Consensus 398 ~V~~l~--------~spdg~~las~~~d~~i~iwd~~~~~~~~~~------~~~~~h~~~v~~~~~s~d~~~l~l~s~~~ 463 (1092)
.|..|. |-|.=++|++...--.|.|+-+.-.+.-... ..+....-.|+|+....+|+ ++. +|.
T Consensus 121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~ 197 (1311)
T KOG1900|consen 121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGR 197 (1311)
T ss_pred hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eec
Confidence 444443 3444566666656666777766533221111 11222244688999888898 454 555
Q ss_pred CCcEEEEEC----CCC---c-e----------------eEEEe-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001363 464 DKTIKVWDA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1092)
Q Consensus 464 d~~i~vwd~----~~~---~-~----------------~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~ 518 (1092)
|| .+|.+ ..| + + +-.+. .+..+|..+.+.. .-.++.+-+..|+|.+||+..
T Consensus 198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 66 44432 111 1 1 11222 4567888888843 346888999999999999875
No 470
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.51 E-value=26 Score=34.75 Aligned_cols=146 Identities=12% Similarity=0.142 Sum_probs=85.9
Q ss_pred CEEEEEeCCCcEEEEEcC--CceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC------cEEEE---EcCCCceeeeee
Q 001363 857 NVIAIGMDDSTILIYNAR--SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA------QIFVW---DVDGWGIQTCRS 925 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg------~I~iw---d~~~~~~~~~~~ 925 (1092)
..|..+.....|.+|++. ..+.+.++.. -+.|..++++..|++|+|-=.+. .+|+| +....+.... .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v-~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV-R 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE-E
Confidence 455455667789999998 3456677763 47899999999999999864322 45553 3331110000 0
Q ss_pred eecCCCC------------------cCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCcee-ee-----ee---ccCC-
Q 001363 926 LQTPDGV------------------MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC-LK-----QW---FPIS- 977 (1092)
Q Consensus 926 ~~~~~~~------------------~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~-~~-----~~---~~~h- 977 (1092)
.+. -|| .+....+.+++.-|-..-|++|.++.+.+|.+..... .. .+ ...|
T Consensus 107 vRi-aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 107 VRI-AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEE-cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 000 010 0111356788888877778888899999998764433 11 00 1112
Q ss_pred -CCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 978 -SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 978 -~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
+-.+..++|. +.|+|..+ +-.+++..+.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 3334555554 55888665 5567777653
No 471
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=88.41 E-value=51 Score=37.51 Aligned_cols=272 Identities=16% Similarity=0.088 Sum_probs=133.6
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.|.++.+.-.|. +-.|+.|| +..+|..+|+.+....- ....+|.++.-+-.| .|.+|+
T Consensus 166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg-~LWVGT 223 (671)
T COG3292 166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQG-RLWVGT 223 (671)
T ss_pred cceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcC-cEEEEe
Confidence 788999999997 34555655 66778777776642110 011355555555444 466677
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-cCC--cCeEEEe
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHG--APVYSLC 492 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~--~~v~~i~ 492 (1092)
.+| |.+.+.++.+.... -..-..+.|..+.=..+|. +-.|+..|..+. ....+....... -|. ..|+++.
T Consensus 224 dqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~ 296 (671)
T COG3292 224 DQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLW 296 (671)
T ss_pred ccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccccccee
Confidence 777 88877766321110 0011233454444444444 444554543322 323332222221 121 2233333
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001363 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1092)
. +.+| -|-+++.+|.+++-+-+-..........+..+...+.+| .+..+-.... .+.+.+-+..+|..++.
T Consensus 297 ~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~v~s 369 (671)
T COG3292 297 L--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGELVRS 369 (671)
T ss_pred e--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcEEEE
Confidence 2 3333 456666676666543221111111111111111122222 1111111111 22355666677777776
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
..... ...|+.+++..+ ..+-.|+...-+..|+.++ +......... ..+.|..+.=.|+++ |..|+.+|-++.
T Consensus 370 v~q~R--g~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 370 VHQLR--GMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred eeecc--ccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence 54433 356777777764 4566666664566677666 3333333222 234577777788887 778888776543
No 472
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.36 E-value=36 Score=37.23 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=85.3
Q ss_pred CCCCeeEEEEec-CCCEEEEEeCCe------EEEEEcCC--c--eee-----EEecCCCC--------CeEEEEEcCCCC
Q 001363 801 SQEAVPCFALSK-NDAYLFSASGGV------ISLYIVMT--F--KTI-----LTIMPPSP--------TATSLAFNPHDN 856 (1092)
Q Consensus 801 ~~~~v~~~~~s~-dg~~l~~~sdg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~s~~d~ 856 (1092)
.-+.++.+.+.+ ++.+++...+|. +..+++.. + ..+ ..+....+ ..-++++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 345678889985 555555554455 55444432 1 111 11222221 344788866 78
Q ss_pred CEEEEEeCC------CcEEEEEcCCceeeEeec---------------cccCCeEEEEEcCCCCEEEEEeC-----CC--
Q 001363 857 NVIAIGMDD------STILIYNARSSEVISKLE---------------GHSKRVTGLVFSDALNILVSSGG-----DA-- 908 (1092)
Q Consensus 857 ~~lasg~~d------g~v~iwd~~~~~~~~~l~---------------~h~~~V~~l~~spdg~~l~s~s~-----Dg-- 908 (1092)
.++++.-.+ ..|+.++.. |+.+..+. ..+....+|+++|||+.|.++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888876666 788888876 65544331 13456889999999997766543 22
Q ss_pred c-------EEEEEcCCCc---eeeeeeeecCCC-CcCCCCCceEEEEccCCCEEEE
Q 001363 909 Q-------IFVWDVDGWG---IQTCRSLQTPDG-VMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 909 ~-------I~iwd~~~~~---~~~~~~~~~~~~-~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
. ++|+...... ...........- .......+..+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 5665554321 111122222210 0001136889999999998887
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.69 E-value=47 Score=36.29 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=90.9
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCc------EEEEEcCC--c--eee-----EeeccccC--------CeEEEEEcCCCC
Q 001363 843 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EVI-----SKLEGHSK--------RVTGLVFSDALN 899 (1092)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~spdg~ 899 (1092)
-+.+..+++.+ ++..+++.+.+|. +..+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35678889987 3445555677777 66665543 1 111 11111111 344788888888
Q ss_pred EEEEEeCC------CcEEEEEcCCCceeeeeeeecCC-------CCcCCCCCceEEEEccCCCEEEEE------eCC--c
Q 001363 900 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET--H 958 (1092)
Q Consensus 900 ~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~s~dg~~la~~------~d~--~ 958 (1092)
++++.=.+ ..|..++.. +.......+...- ..........+++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88877666 678778766 3332211111110 112233578999999999955442 222 1
Q ss_pred -------EEE--EEcCC-ceeeeee---ccC-----CCCCEEEEEEecCCCEEEEEE-----CCCcEEEEEcC
Q 001363 959 -------LAI--YEAEE-LTCLKQW---FPI-----SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEAS 1008 (1092)
Q Consensus 959 -------i~l--wd~~~-~~~~~~~---~~~-----h~~~v~~l~fs~dg~~l~t~~-----~Dg~i~vwd~~ 1008 (1092)
+++ ||..+ ++....+ ... ....|+.+.+-+|+++|+.-= ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45444 3222221 111 357889999999999777421 23456666554
No 474
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=87.65 E-value=41 Score=43.55 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=80.0
Q ss_pred EeCCCcEEEEEcCCce-------eeEee---------ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001363 862 GMDDSTILIYNARSSE-------VISKL---------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS 925 (1092)
Q Consensus 862 g~~dg~v~iwd~~~~~-------~~~~l---------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 925 (1092)
|-.||.|.-||-.+.. -+..| .-..+.|..+.+++...-++-+ .+..+.+=-.. .+......
T Consensus 619 ~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g-~~~~~a~~~~r-~~~e~G~~ 696 (1774)
T PF11725_consen 619 GLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHG-DNNVFALPQRR-NKVELGDA 696 (1774)
T ss_pred eeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccC-CCccccccccc-CCCCCCcc
Confidence 4567999999976521 11111 1134667777777765555433 22222210000 11111123
Q ss_pred eecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 001363 926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~v 1004 (1092)
+...+ ...|+++|+-.+.++++....|.+.... ..+..+..-..+-.+.|..++......+.+ -..+|.++-
T Consensus 697 l~Gl~-----~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~ 768 (1774)
T PF11725_consen 697 LEGLE-----DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYA-LTSTGELFR 768 (1774)
T ss_pred ccCCC-----cCcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeE-ecCCCceee
Confidence 33333 1368999999999999998889999988 667665554555689999999988765444 556776553
No 475
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.59 E-value=48 Score=36.24 Aligned_cols=111 Identities=8% Similarity=-0.029 Sum_probs=55.2
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCcee-eeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe------CCcEEEEEc
Q 001363 897 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA 964 (1092)
Q Consensus 897 dg~~l~s~s~Dg-----~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~------d~~i~lwd~ 964 (1092)
++++++.|+.++ .+..+|+.+.+.. ....+...... .-...+..-++++.+.+. ...+..||.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence 566777777643 4666677664421 11111111111 011122233566666542 135888898
Q ss_pred CCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCc----EEEEEcCCCce
Q 001363 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEV 1012 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~----i~vwd~~~~~~ 1012 (1092)
.+.+-...-......+....+...++++.+.|+.++. +..||..+...
T Consensus 147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 7665432210111122233334567888888887643 56788877654
No 476
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.28 E-value=1.9 Score=29.47 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=22.2
Q ss_pred cCCCCceEEeecCCCceEEEEEcCC--CcEEEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW 362 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~d--g~i~iw 362 (1092)
.....-.+.+|||||++++.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3345778899999999888787777 666665
No 477
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.22 E-value=12 Score=38.20 Aligned_cols=148 Identities=11% Similarity=0.043 Sum_probs=83.4
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC---CeEEEEEeeccccCCceEEEEEcC
Q 001363 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT 588 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~ 588 (1092)
.+||+.+.+...........+.+-++-+||+.+.+++. .++...+++++..+ ..........-.....-.+...-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 46888776654433333334445567899999988875 44667788888765 111111111011123444556678
Q ss_pred CCCEEEEEeCCC-cEEEEECCC-CceEEEE---eC---CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeec
Q 001363 589 AKDQILAAGDDH-VIKIWDMNK-VQLLTTI---DA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 589 ~~~~l~~~s~dg-~i~iwd~~~-~~~~~~~---~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 660 (1092)
||+.++.|+... +..+|.... ......+ .. ......-..+...|+|++++.+..+ -.|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 999999987664 345555422 1111111 10 1111223467788999999988765 456688877665555
Q ss_pred cc
Q 001363 661 GV 662 (1092)
Q Consensus 661 ~~ 662 (1092)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 43
No 478
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=87.14 E-value=94 Score=39.17 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=18.5
Q ss_pred ccccEEEEEEecCCcEEEEeecCCe
Q 001363 733 KANKISRLTYNNGGQAIFALASNGV 757 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~ 757 (1092)
+-+.+.+++++|||..+++-..+-.
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~r 684 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSR 684 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchh
Confidence 5677889999999997666555433
No 479
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.92 E-value=9.4 Score=48.17 Aligned_cols=68 Identities=10% Similarity=0.166 Sum_probs=44.1
Q ss_pred ceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCce
Q 001363 939 ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 939 v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
+.+..+...+..+.....+.+-+|+.........+...+... +.++..++++-.||.+.+||...|..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 201 SLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecCCEEeeecCCCce
Confidence 444444445555555555666666655444433333222211 88999999999999999999999866
No 480
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.78 E-value=0.13 Score=55.53 Aligned_cols=242 Identities=16% Similarity=0.117 Sum_probs=137.1
Q ss_pred EEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE
Q 001363 739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 818 (1092)
Q Consensus 739 ~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~ 818 (1092)
...+.+.+.-++.++.+..+..||-.... .... ........+++..++..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-----------------------~le~-----n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-----------------------ILEL-----NPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce-----------------------eccc-----CCchhHhhhhhccccchhh
Confidence 45566777668888887777776632211 1111 1233445677777777776
Q ss_pred EEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcC
Q 001363 819 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896 (1092)
Q Consensus 819 ~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp 896 (1092)
... .+.+.+||+.+....+--.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|...++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 665 58899999975432211111111122278999 889999999999999999988776666655999999999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCC---ceEEEEccCCCEEEEEeCCcEEEE--Ec--CCcee
Q 001363 897 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS---ETHIQFHKDQTRFLLVHETHLAIY--EA--EELTC 969 (1092)
Q Consensus 897 dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~---v~~l~~s~dg~~la~~~d~~i~lw--d~--~~~~~ 969 (1092)
.+ +.+.++.|..+.+-...+..... ....+... ... +..=.|..-|..+...-.+.+.+. .+ ..+ +
T Consensus 170 Ed-~vil~dcd~~L~v~~qegeta~l----tevggepd-nm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~-p 242 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVTTQEGETASL----TEVGGEPD-NMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDE-P 242 (615)
T ss_pred cc-eeeecCcHHHHHHhhhccceeee----eeccCccc-hhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCC-c
Confidence 75 55667777665544433321111 00111110 000 111123333444444222221111 11 111 1
Q ss_pred eeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeec
Q 001363 970 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 970 ~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
....+....+.+.++.|--||. |.-+-.-|.|..-.+.++++...|.
T Consensus 243 val~fq~~~gni~cyrwylDg~-i~igf~ag~iV~iS~h~aeLgaeff 289 (615)
T KOG2247|consen 243 VALQFQEKYGNIHCYRWYLDGY-ILIGFDAGYIVSISAHNAELGAEFF 289 (615)
T ss_pred cceEeeecCCceeEEEEecccc-ccccccceeEEEEeccchHHHHHHH
Confidence 1112223366788888888885 4446666777777788887765554
No 481
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.73 E-value=16 Score=40.37 Aligned_cols=142 Identities=15% Similarity=0.222 Sum_probs=87.8
Q ss_pred cCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC-------CCCEEEEEeCCCcEEEEEcCC-ceeeEe
Q 001363 812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-------DNNVIAIGMDDSTILIYNARS-SEVISK 881 (1092)
Q Consensus 812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-------d~~~lasg~~dg~v~iwd~~~-~~~~~~ 881 (1092)
.|..++..-+ ...++-.|++.|+.+.....|... -+.|.|. +.+.|+ |-.+..|.-.|.+- |..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 3444444443 266888899999999888877655 4666662 223444 55555555555432 322222
Q ss_pred eccccCCeEEEEEc----CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCC
Q 001363 882 LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957 (1092)
Q Consensus 882 l~~h~~~V~~l~~s----pdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~ 957 (1092)
.. ....++.-.|| ....++|.+|.-|.|++||--...... .+.. .+..|..+..+.+|+++++....
T Consensus 554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--alP~------lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--ALPG------LGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--cCcc------cccceeeeEeecCCcEEEEeecc
Confidence 11 12223333333 245699999999999999976522111 1111 22468899999999999998888
Q ss_pred cEEEEEcC
Q 001363 958 HLAIYEAE 965 (1092)
Q Consensus 958 ~i~lwd~~ 965 (1092)
.+.+.|+.
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 88888875
No 482
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=86.59 E-value=74 Score=37.40 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=61.7
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCc--eEEecCC-CCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAP-GLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~-~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
..++..++.+..+|.+....+..... ....-+. .....++++-.+| .+++.++.. +++.+..|....-+.+..+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~--gds~l~~~~~~~l~~~~~~ 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF--GDSQLLQISLSNLEVLDSL 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS--S-EEEEEEESESEEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec--CCcEEEEEeCCCcEEEEec
Confidence 45667899999999998877665442 1222112 3345566665555 467777664 4688888887666777777
Q ss_pred eeccccCCceEEEEEcCC----CC------EEEEEe---CCCcEEEEE
Q 001363 572 QGLQLQHNSVSVVHFDTA----KD------QILAAG---DDHVIKIWD 606 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~----~~------~l~~~s---~dg~i~iwd 606 (1092)
... ++|..+++.+. .. .+++++ .+|.+++..
T Consensus 297 ~N~----~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 297 PNW----GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp --------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred cCc----CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 664 48888887532 22 566654 566777764
No 483
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.49 E-value=46 Score=39.24 Aligned_cols=476 Identities=9% Similarity=0.007 Sum_probs=0.0
Q ss_pred eecccCCCCceEEeecCCCceEEEEE---cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeec------CCCCc
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVG---TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR------DPGVS 398 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg---~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~------~h~~~ 398 (1092)
.++..-++.+-.++|..-+.++.+++ +.|..|.|.......-.. ....|....+. .|-+.
T Consensus 10 ~~fpt~sg~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s~~~d~s-----------~l~~F~ip~f~dkl~s~~hf~~ 78 (1243)
T COG5290 10 STFPTASGDEDELGFDSVGDWIYITCVLGSTDKGIEVAKESSIYDES-----------GLKRFEIPFFPDKLLSFKHFHV 78 (1243)
T ss_pred ccCCCCCCChHHhcccccCceEEEEeecCCCCCCeeeeeeccccchh-----------heeEeccCCcchHhhhhhhhhh
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
++.+.|+-++--++..-.|.+ ....... ....-...|.+.+||.|.+ .++....+..|.+++ ..-.++
T Consensus 79 ~~~~~f~~~~gDii~~~~dp~------p~e~~~e---ivG~v~nGIvaa~wS~DE~--~~cvvt~~r~il~~~-k~fd~i 146 (1243)
T COG5290 79 LTFEYFLIDEGDIIHLVNDPT------PAELEME---IVGKVSNGIVAASWSADEK--TWCVVTSTREILLFD-KYFDPI 146 (1243)
T ss_pred hheeeEEecCCcEEEEEcCCC------cccchhh---hhccccCceEEEeeccCCc--eEEEEEcCceEEEEe-cccccc
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecC------------------------CeEEEEEcCCCCceEEecCCCCceEE
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVD------------------------GKIKAWLYDSLGARVDYDAPGLGCTR 534 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~i~~ 534 (1092)
....-......-+ ..-++.+.. ..=.+.++++.+..
T Consensus 147 se~~L~~~dl~ef--------~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~------------ 206 (1243)
T COG5290 147 SEYHLKKSDLVEF--------GKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKI------------ 206 (1243)
T ss_pred chhhcchhHHHHh--------ccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceE------------
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-----EEEEECCC
Q 001363 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNK 609 (1092)
Q Consensus 535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-----i~iwd~~~ 609 (1092)
++|-.|..+.+.+.........+++|. +.|++-..-.... +.-..+.|-|.|..+++-+.||. |.++..+.
T Consensus 207 i~wrgD~~y~~v~r~Ee~prra~rvys-reg~lds~sep~~---g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG 282 (1243)
T COG5290 207 IFWRGDTEYNLVGRSEERPRRAFRVYS-REGQLDSASEPVT---GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG 282 (1243)
T ss_pred EEEccCcceeeecchhcccccceeeec-cccccccccCCcc---cchhccccccCCceeeeeccCCCCCcceEEEEccCC
Q ss_pred ---CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCC
Q 001363 610 ---VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1092)
Q Consensus 610 ---~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 686 (1092)
|+.-........ +..++|+-....++++.. +.+.+|-..+-...-.....-..+.-+.|.|
T Consensus 283 LrHGef~lr~~~dEk---~~~~~wn~~s~vlav~~~-n~~~lwttkNyhWYLK~e~~ip~~s~vkwhp------------ 346 (1243)
T COG5290 283 LRHGEFDLRVGCDEK---AFLENWNLLSTVLAVAEG-NLLKLWTTKNYHWYLKVERQIPGISYVKWHP------------ 346 (1243)
T ss_pred cccCCccccCCchhh---hhhhhhhHHHHHHHHhhc-ceEEEEEccceEEEEEEeecCCCcceeeecc------------
Q ss_pred ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCC
Q 001363 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1092)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~ 766 (1092)
..+...+++++. .|..+.|+..-..-.+......-..+-++..
T Consensus 347 --------e~~nTl~f~d~~-----------------------------~I~~V~f~~k~~~~~s~~p~d~g~~~ViDGs 389 (1243)
T COG5290 347 --------EEKNTLLFRDGE-----------------------------RILRVFFSEKKTHHGSEYPFDNGTSYVIDGS 389 (1243)
T ss_pred --------ccCcEEEEecCC-----------------------------eEEEEEeehhhhcCCcccCccCCceEEEcCc
Q ss_pred CcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCC--
Q 001363 767 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP-- 844 (1092)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~-- 844 (1092)
......-.....++.++...-+. ...|..++.+-..+..+...+..+..+.+.+.+.+........
T Consensus 390 ~~l~Tplsl~n~PPPm~~~~~~~------------d~NV~dv~~s~~~~~~aa~~~drli~f~~~s~e~i~k~~ef~~se 457 (1243)
T COG5290 390 YMLYTPLSLKNLPPPMFSVRVGF------------DTNVVDVFPSFAEKKGAALLRDRLIMFRWDSEEFINKRTEFLESE 457 (1243)
T ss_pred eEEecchhhhcCCCCeEEEEecC------------CCceeeeccchhhhhHhhhccceeEEEecCcHHHHHHhccccHHh
Q ss_pred -----CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcC
Q 001363 845 -----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 845 -----~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~l~s~s~Dg~I~iwd~~ 916 (1092)
....+.+-. ++..++....++.-+++=++.+..-....--...+..-+.-. +..++..+..+|.|+-+|++
T Consensus 458 f~s~v~f~~~l~l~-~~~v~ll~dtnn~s~~~i~~~~d~~e~~k~~~ve~~~~~~l~~~~c~~~l~y~t~~G~v~~yn~e 536 (1243)
T COG5290 458 FDSIVLFDGFLVLK-SGHVFLLKDTNNESDTYITRNGDVDERKKRGTVETRRTSTLVHQLCQTLLRYGTCVGVVKHYNFE 536 (1243)
T ss_pred hhhhccccceEEec-CceEEEEeccCCCcceEEeecCcccchhhccceeeeeeehhhHHHHHHHHhhcccceeEEEecch
No 484
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.28 E-value=42 Score=38.96 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=72.3
Q ss_pred CCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001363 864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1092)
..+...++|.. |.++..+.........+.+.++|.+++..+ ..++.+|+.+.. .....+ ..+... .=..+.
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v-~~~~~l--~~~~~~---~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV-IWEYDL--PGGYYD---FHHDID 196 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E-EEEEE----TTEE----B-S-EE
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE-EEeeec--CCcccc---cccccE
Confidence 34455566644 455444432222111166678998887665 678888887532 221122 211100 012577
Q ss_pred EccCCCEEEEEe--------------CCcEEEEEcCCceeeeeeccC-C-------------------------CCCEEE
Q 001363 944 FHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPISQ 983 (1092)
Q Consensus 944 ~s~dg~~la~~~--------------d~~i~lwd~~~~~~~~~~~~~-h-------------------------~~~v~~ 983 (1092)
.-|+|++|+.+. +..|..+| .+|+.+..|... | -.-+.+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 889999988754 23466666 677666554211 1 134788
Q ss_pred EEEec-CCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001363 984 ATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 984 l~fs~-dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
+.+.+ |+.+|+++=.-..|...|..++++...+....
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 89988 55555554444588888988999988877544
No 485
>PRK13614 lipoprotein LpqB; Provisional
Probab=86.28 E-value=48 Score=38.97 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=88.7
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee-EeeccccCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCC-Cce
Q 001363 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDG-WGI 920 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--~I~iwd~~~-~~~ 920 (1092)
.+.+++.++ ++..+|....++. .+|-...+... ..+.+ ..++.-.|.++| ++-++..+. .|....-.. ++.
T Consensus 344 ~~~s~avS~-~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g--~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESP-VSQTVAFLNGSRT-TLYTVSPGQPARALTSG--STLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecC-CCceEEEecCCCc-EEEEecCCCcceeeecC--CCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence 678899999 8888888877762 33433323332 23333 347777888887 666655443 444443221 110
Q ss_pred eeee--eeecCCCCcCCCCCceEEEEccCCCEEEE--EeCCc--EEEEEc---CCceeeee--e-ccCCCCCEEEEEEec
Q 001363 921 QTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETH--LAIYEA---EELTCLKQ--W-FPISSVPISQATFSC 988 (1092)
Q Consensus 921 ~~~~--~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~--i~lwd~---~~~~~~~~--~-~~~h~~~v~~l~fs~ 988 (1092)
.... .+.. .... ...|..+..|+||..+|. ..++. |+|--+ ..|..... . ..++...+.++.|..
T Consensus 419 ~~~~~~~v~~-~~l~--g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~ 495 (573)
T PRK13614 419 AQAPTVTLTA-DWLA--GRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVG 495 (573)
T ss_pred ccccceeecc-cccC--CCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcC
Confidence 0000 1111 1111 124999999999999887 34665 666544 34442211 1 112346889999999
Q ss_pred CCCEEEEEEC-C--CcEEEEEcCCC
Q 001363 989 DCRMVFTSFV-D--GTLSIHEASNL 1010 (1092)
Q Consensus 989 dg~~l~t~~~-D--g~i~vwd~~~~ 1010 (1092)
++.+++.+.. + ..+++..+..|
T Consensus 496 ~~sl~V~~~~~~~~~~~~~v~v~~g 520 (573)
T PRK13614 496 DSTVVVTKASATSNVVPELLSVDAG 520 (573)
T ss_pred CCEEEEEeccCCCcceEEEEEeCCC
Confidence 9987776542 2 34566666544
No 486
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=86.12 E-value=60 Score=35.89 Aligned_cols=43 Identities=5% Similarity=-0.150 Sum_probs=21.9
Q ss_pred CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC
Q 001363 957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 999 (1092)
Q Consensus 957 ~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D 999 (1092)
+.+..||..+.+-...-.......-...+...++++.+.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 4588899876654332111111111122234577888888754
No 487
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.05 E-value=4.9 Score=40.71 Aligned_cols=72 Identities=10% Similarity=-0.028 Sum_probs=54.9
Q ss_pred EEEccCCCEEEE-EeCCcEEEEEcCCceeeeee------cc-------CCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 942 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 942 l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
+.+..++.+|++ ..+|.+++||+.+++.+... +. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 445667777776 89999999999998876442 22 3467889999999998888765 588999998
Q ss_pred CCCceEE
Q 001363 1008 SNLEVQC 1014 (1092)
Q Consensus 1008 ~~~~~~~ 1014 (1092)
+-+....
T Consensus 95 ~L~~W~~ 101 (219)
T PF07569_consen 95 DLGCWIR 101 (219)
T ss_pred ccceeEE
Confidence 8775553
No 488
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.00 E-value=2.9 Score=42.31 Aligned_cols=74 Identities=9% Similarity=0.122 Sum_probs=51.6
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCceeeee-ee-ecCCCC----cCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCc
Q 001363 894 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-SL-QTPDGV----MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 967 (1092)
Q Consensus 894 ~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~-~~-~~~~~~----~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~ 967 (1092)
+..++++|+..+.+|.+++||+.+++..... .+ ...... ......|..+.++.+|.-|++-.+|..+.|+..=+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999987644322 11 111100 01224689999999999888877788899987633
No 489
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.91 E-value=75 Score=36.86 Aligned_cols=193 Identities=12% Similarity=0.154 Sum_probs=91.7
Q ss_pred EEEEEE---eCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc-
Q 001363 456 ISVITC---GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG- 531 (1092)
Q Consensus 456 l~l~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~- 531 (1092)
+++++. ...+...+.| ..|.....+......... |...++|.+++... +.+..+|+.. +....+......
T Consensus 116 l~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYY 189 (477)
T ss_dssp EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred EEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCccc
Confidence 355555 3445566677 556655555332222111 22355776666544 7777777753 333333333321
Q ss_pred --eEEEEEccCCCEEEEEec---------CCCCceeEEEEeCCCCeEEEEEeeccc----------------------c-
Q 001363 532 --CTRMAYSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQL----------------------Q- 577 (1092)
Q Consensus 532 --i~~~~~s~dg~~l~~~~~---------~~~~~~~i~iwd~~~~~~~~~~~~~~~----------------------~- 577 (1092)
-..+...|+|++|+.+.. .......|..+| .+|+.+........ .
T Consensus 190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 235677899999887762 111123466677 77777665432110 0
Q ss_pred -CCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEeCCCCCCCC-ceEEEcc------------------CCCE
Q 001363 578 -HNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPEN-PRICFNK------------------NGTL 636 (1092)
Q Consensus 578 -~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~v~~s~------------------~~~~ 636 (1092)
--.+.++.+.+....|+..+. -..|...|..+++....+..++....- ....+.| -|++
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH 348 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQH 348 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-E
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccccccc
Confidence 023788999895556665555 448889999999998888665432211 1111111 2566
Q ss_pred EEEEeCCC---eEEEEECCCCc
Q 001363 637 LAVIANEN---RIKILETPESN 655 (1092)
Q Consensus 637 l~~~~~dg---~i~iw~~~~~~ 655 (1092)
-+.-..+| .|.++|-...+
T Consensus 349 ~~~~~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 349 TAHLIPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp EEEE-TTS---SEEEEE--TTG
T ss_pred ceEEcCCCCeEEEEEEECCCCC
Confidence 66666777 88888876553
No 490
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.60 E-value=3.9 Score=39.76 Aligned_cols=32 Identities=38% Similarity=0.591 Sum_probs=26.3
Q ss_pred CcEEEEEECCCC------CEEEEEeCCCEEEEEEccCC
Q 001363 397 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHGG 428 (1092)
Q Consensus 397 ~~V~~l~~spdg------~~las~~~d~~i~iwd~~~~ 428 (1092)
..|.+++|||-| -+||+.+.++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 389999999954 47888899999999987653
No 491
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.94 E-value=3.3 Score=44.67 Aligned_cols=159 Identities=9% Similarity=0.078 Sum_probs=97.5
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceee-EEec-CCCC----CeE-EEEEcCCCCCEEEEEeCCCcEEEE-E
Q 001363 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-LTIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N 872 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~l~~s~~d~~~lasg~~dg~v~iw-d 872 (1092)
....+..+-..|||+.+..-+..++.++++.+.... +.+. ...+ .|+ ++..-. ++.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 345677888999999999988889999988654322 1111 1112 122 222233 67778889999988776 4
Q ss_pred cCCc-e----eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC
Q 001363 873 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 873 ~~~~-~----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
+..+ . .+..++-...++..+.--.+.+-+++-+..|++.++.....+.. ..+..- ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~~------~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERAY------QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhhh------cCcceeeeCcc
Confidence 4332 2 12222212233433333334466777888888887765542211 111111 13668999999
Q ss_pred CCEEEEEeCCcEEEEEcCCcee
Q 001363 948 QTRFLLVHETHLAIYEAEELTC 969 (1092)
Q Consensus 948 g~~la~~~d~~i~lwd~~~~~~ 969 (1092)
+.+|++-..|.++++.+++...
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred cchheeecCCceEEEEecCCCC
Confidence 9999998889999999876543
No 492
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.57 E-value=26 Score=38.16 Aligned_cols=162 Identities=13% Similarity=0.131 Sum_probs=89.0
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee-EEEEe
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALS 811 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~-~~~~s 811 (1092)
....+..+-..|||+.+..-+. ..+.++++........ ++-+-..|. ....|+ .+..-
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r---------kl~~dspg~-----------~~~~Vte~l~lL 277 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR---------KLVDDSPGD-----------SRHQVTEQLYLL 277 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh---------hhhhcCCCc-----------hHHHHHHHHHHH
Confidence 4566778889999998887776 5788888766543111 001111110 001111 11112
Q ss_pred cCCCEEEEEe-CCeEEEE-EcCCc-----eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc
Q 001363 812 KNDAYLFSAS-GGVISLY-IVMTF-----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 812 ~dg~~l~~~s-dg~i~iw-d~~~~-----~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
..|.-+.+++ ||.|.-| |...+ ..++.++-...++..+.--. ..+-+++-+..|++.++.....+.+-.-.
T Consensus 278 ~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~- 355 (733)
T COG4590 278 SGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER- 355 (733)
T ss_pred hCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh-
Confidence 2333344443 6666555 44322 12223332233444444333 45667777888888888765544332222
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001363 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~ 918 (1092)
--..+.-+++||.+.+|++-. .|.|+++.+++.
T Consensus 356 ~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 356 AYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred hhcCcceeeeCcccchheeec-CCceEEEEecCC
Confidence 223566789999999999754 456999988764
No 493
>PRK13613 lipoprotein LpqB; Provisional
Probab=84.48 E-value=93 Score=37.01 Aligned_cols=190 Identities=9% Similarity=0.024 Sum_probs=101.3
Q ss_pred CeeEEEEecCCCEEEEEeC-C-eEEEEEcCCcee----eEEecCCCCCeEEEEEcCCCCCEEEEEeC--CC--cEEEEEc
Q 001363 804 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYNA 873 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sd-g-~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg--~v~iwd~ 873 (1092)
.+.+++.|+++..+|...+ + .+.+..+..+.. ..... .....+.-.|.+ ++ .+-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CC-CEEEecCCCCCceEEEEEcC
Confidence 6778999999999887763 3 466655533322 11111 123466667777 45 3434322 22 2555543
Q ss_pred CCceeeEe-eccccC-CeEEEEEcCCCCEEEEEeC---CCcEEEEEcCC---CceeeeeeeecCCCCcCCCCCceEEEEc
Q 001363 874 RSSEVISK-LEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFH 945 (1092)
Q Consensus 874 ~~~~~~~~-l~~h~~-~V~~l~~spdg~~l~s~s~---Dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~~s 945 (1092)
+|+.... .....+ .|+.+..|+||-.+|.... .+.|.|=-+.. +............+. ..+.+++|.
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W~ 515 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSWA 515 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEEc
Confidence 4443210 112233 7999999999988776544 35565554433 221111122221221 248899999
Q ss_pred cCCCEEEEE--eC--CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEECCCcE
Q 001363 946 KDQTRFLLV--HE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 1002 (1092)
Q Consensus 946 ~dg~~la~~--~d--~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~Dg~i 1002 (1092)
.++.+++.+ .+ ..+...++........ ..+.-..+..++-..+.+ .|+.+..++.|
T Consensus 516 ~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~-~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 516 GDSQLVVLGREEGGVQQARYVQVDGSTPPAS-APAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CCCEEEEEeccCCCCcceEEEecCCcCcccc-cccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 999988854 33 3344445443322211 112344566677776666 45543555554
No 494
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=84.22 E-value=94 Score=36.53 Aligned_cols=80 Identities=10% Similarity=0.165 Sum_probs=48.1
Q ss_pred CCEEEEEeCCeEEEEEcCCceeeEEecCC-CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec-c----ccC
Q 001363 814 DAYLFSASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-G----HSK 887 (1092)
Q Consensus 814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~----h~~ 887 (1092)
+..++-.....|++.+...++........ ...|.+.+.. +.+++.+..++.+..+.+.......... . ...
T Consensus 418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (504)
T PF10433_consen 418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYFELDDNKISVSDNDETILELDN 494 (504)
T ss_dssp TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence 55666666777999998877777665433 3456666664 3467777778999999988766542222 1 457
Q ss_pred CeEEEEEcC
Q 001363 888 RVTGLVFSD 896 (1092)
Q Consensus 888 ~V~~l~~sp 896 (1092)
.|.|+...|
T Consensus 495 eis~l~i~p 503 (504)
T PF10433_consen 495 EISCLSIEP 503 (504)
T ss_dssp -EEEEE---
T ss_pred ceEEEEeCC
Confidence 788887765
No 495
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=83.99 E-value=57 Score=33.84 Aligned_cols=276 Identities=10% Similarity=0.063 Sum_probs=129.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceee
Q 001363 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1092)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1092)
+.+..+.++ +++++.+..+.-++|.|+.+......+..-.... ..-.+.-.|++..++..|.-+.+.|+.+.....
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g--yaygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG--YAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc--eEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 455666665 4678888888889999998765443332211101 223344458888888866677788887653322
Q ss_pred e---cccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccc
Q 001363 659 A---AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 735 (1092)
Q Consensus 659 ~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~ 735 (1092)
. ..........++++ |++-..+..|+.+.+-|+......... .......
T Consensus 163 lagrya~~~~d~~~v~IS------------------------Gn~AYvA~~d~GL~ivDVSnp~sPvli----~~~n~g~ 214 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS------------------------GNYAYVAWRDGGLTIVDVSNPHSPVLI----GSYNTGP 214 (370)
T ss_pred eeeeeccCCCCceeEEEe------------------------cCeEEEEEeCCCeEEEEccCCCCCeEE----EEEecCC
Confidence 1 11122222223332 555566667777788776532211110 0001122
Q ss_pred cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
.+.++..+++..+++.... | +.+-+....+ .+.++. .-+......++.+.++ ++
T Consensus 215 g~~sv~vsdnr~y~vvy~e-g-vlivd~s~~s-----------sp~~~g-----------syet~~p~~~s~v~Vs--~~ 268 (370)
T COG5276 215 GTYSVSVSDNRAYLVVYDE-G-VLIVDVSGPS-----------SPTVFG-----------SYETSNPVSISTVPVS--GE 268 (370)
T ss_pred ceEEEEecCCeeEEEEccc-c-eEEEecCCCC-----------CceEee-----------ccccCCcccccceecc--cc
Confidence 5666666666554443332 2 2222221110 011111 0000011222223333 33
Q ss_pred EEEEEe-CCeEEEEEcCCcee---eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEE
Q 001363 816 YLFSAS-GGVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891 (1092)
Q Consensus 816 ~l~~~s-dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 891 (1092)
+...+. +.-+.+-|+..... ...+.........+..+ +.++..+..+ ...+-+....+......+....+.+
T Consensus 269 ~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay---~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s 344 (370)
T COG5276 269 YAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY---GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQS 344 (370)
T ss_pred eeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe---cCeeEeccCC-ceEEEeCCChhhcccccCcceEeee
Confidence 443333 33344455442211 11111111122333332 2344444433 4445555544433333333334455
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcC
Q 001363 892 LVFSDALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 892 l~~spdg~~l~s~s~Dg~I~iwd~~ 916 (1092)
.+.+-+.+.+-+...++.+.||+..
T Consensus 345 ~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 345 CDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred cceEEEeeEEEEeecCCCEEEEEec
Confidence 5555566778888889989999853
No 496
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.92 E-value=73 Score=35.07 Aligned_cols=188 Identities=13% Similarity=0.143 Sum_probs=100.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeec--ccCCccE--EEEEe-cC---CeEEEEEcCCCCceE-EecC
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHF--IFSIS-VD---GKIKAWLYDSLGARV-DYDA 527 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~~--l~s~~-~d---g~i~vwd~~~~~~~~-~~~~ 527 (1092)
+++....++-+.+||+ .|+.++.+. .+.++.+... ..-+++. |+.++ .+ .+|++|.++...... .+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777778888999995 555666664 2344444321 1112222 33333 32 469999887533322 2221
Q ss_pred -------CCCceEEEEEc--c-CCCEEEEEecCCCCceeEEEEeC---CCC----eEEEEEeeccccCCceEEEEEcCCC
Q 001363 528 -------PGLGCTRMAYS--A-NGRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK 590 (1092)
Q Consensus 528 -------~~~~i~~~~~s--~-dg~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~~~~~~~~ 590 (1092)
....+..+|+- + +|.+.+.... + ++.+..|.+ ..+ +.++.|... ..+..|......
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDET 219 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETTT
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEeccc
Confidence 11246677763 3 4554444432 1 334554443 333 456777653 478899999999
Q ss_pred CEEEEEeCCCcEEEEECCC-----CceEEEEeCCCCCCCCceEEEc--cCC-CEEEEEe-CCCeEEEEECCCC
Q 001363 591 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFN--KNG-TLLAVIA-NENRIKILETPES 654 (1092)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s--~~~-~~l~~~~-~dg~i~iw~~~~~ 654 (1092)
.+|+.+-++.-|.-|+.+. +..+.......-...+-.+++- .++ .+|++.+ .+++..+|+....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999998888888762 2222222222223456666664 333 2444444 4789999998754
No 497
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.26 E-value=29 Score=39.39 Aligned_cols=112 Identities=12% Similarity=0.089 Sum_probs=60.8
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC------CEEEEE--e-
Q 001363 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H- 955 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg------~~la~~--~- 955 (1092)
.-...+.|+|.|||++|++--..|.|++++-.++.......+...... .-......|+|+|+- .+|.++ .
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~-~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVND-AQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceecc-CCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 345578999999998888765569999998665432211111100000 012357899999884 344442 1
Q ss_pred --------CCcEEEEEcCCc-------eeeeeecc---CCCCCEEEEEEecCCCEEEEEECC
Q 001363 956 --------ETHLAIYEAEEL-------TCLKQWFP---ISSVPISQATFSCDCRMVFTSFVD 999 (1092)
Q Consensus 956 --------d~~i~lwd~~~~-------~~~~~~~~---~h~~~v~~l~fs~dg~~l~t~~~D 999 (1092)
...|.-|.+... +.+..-.+ .|. -..|+|.|||.++++.+..
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 123444544311 11111111 132 3467899999877766544
No 498
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.06 E-value=7.1 Score=37.96 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCC------CEEEEEeCCCcEEEEEcCC
Q 001363 887 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 887 ~~V~~l~~spdg------~~l~s~s~Dg~I~iwd~~~ 917 (1092)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999954 5789999999999998775
No 499
>PRK13613 lipoprotein LpqB; Provisional
Probab=82.72 E-value=1.1e+02 Score=36.34 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=86.4
Q ss_pred CeEEEEEcCCCCCEEEEEeCCC-cEEEEEcCCcee-----eEeeccccCCeEEEEEcCCCCEEEEEeC--CC--cEEEEE
Q 001363 845 TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEV-----ISKLEGHSKRVTGLVFSDALNILVSSGG--DA--QIFVWD 914 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~-----~~~l~~h~~~V~~l~~spdg~~l~s~s~--Dg--~I~iwd 914 (1092)
.+.+++.++ ++..+|....++ .+++..+..+.. ...+. ...++.-.|.++| .+-+... ++ .+++..
T Consensus 364 ~~~s~avS~-~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 364 PLRRVAVSR-DESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CccceEEcC-CCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCC-CEEEecCCCCCceEEEEEc
Confidence 678999999 788888777666 555555433322 12222 2346777888887 5555532 22 255555
Q ss_pred cCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-Ee---CCcEEEEEcC---Cce-eeee---eccCCCCCEEE
Q 001363 915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH---ETHLAIYEAE---ELT-CLKQ---WFPISSVPISQ 983 (1092)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~---d~~i~lwd~~---~~~-~~~~---~~~~h~~~v~~ 983 (1092)
- +++... +.... .....|..+..|+||..+|. .. .++|+|--+. .|. .+.. +... ...+.+
T Consensus 440 ~-~G~~~~---V~~~~---l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~-l~~v~~ 511 (599)
T PRK13613 440 G-DGEPVE---VRTPE---LDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE-LEDVTD 511 (599)
T ss_pred C-CCcEEE---eeccc---cCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC-CCccce
Confidence 3 333221 22211 00126999999999999987 32 2556655442 332 1111 1122 335899
Q ss_pred EEEecCCCEEEEEE-CCCcEEEEEcC
Q 001363 984 ATFSCDCRMVFTSF-VDGTLSIHEAS 1008 (1092)
Q Consensus 984 l~fs~dg~~l~t~~-~Dg~i~vwd~~ 1008 (1092)
+.|..++.+++.+. .++...+|.+.
T Consensus 512 ~~W~~~~sL~Vlg~~~~~~~~v~~v~ 537 (599)
T PRK13613 512 MSWAGDSQLVVLGREEGGVQQARYVQ 537 (599)
T ss_pred eEEcCCCEEEEEeccCCCCcceEEEe
Confidence 99999998877553 33344555544
No 500
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=82.17 E-value=78 Score=34.10 Aligned_cols=210 Identities=13% Similarity=0.009 Sum_probs=102.7
Q ss_pred CCCcEEEEEECCCCCEEEEEe-CCCEEEEEEccCCCc-----------ccc-eEEEcccccceeEEEEecCCCcEEEEEE
Q 001363 395 PGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSD-----------ARQ-QLEIDAHVGNVNDLAFSAPCKQISVITC 461 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~-----------~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~ 461 (1092)
+...|+++...+.-+.|++-+ ....++++++..-.. .+. ....-+|......+... .++...++.+
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~-~~~~~~~l~~ 119 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVV-NGKRSLFLCV 119 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEE-cCCCcEEEEE
Confidence 567899999999877777654 344599999843221 000 00112344444444444 3333345555
Q ss_pred eCCCcEEEEECCCC----ceeEEE---e-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC--CCce-----EEec
Q 001363 462 GDDKTIKVWDAVTG----SRTYSF---E-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS--LGAR-----VDYD 526 (1092)
Q Consensus 462 ~~d~~i~vwd~~~~----~~~~~~---~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~-----~~~~ 526 (1092)
....+|.++.+... ...+.+ . .-..++..+..+.+.....+..|+..+-..++++.. .... ....
T Consensus 120 A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~ 199 (302)
T smart00036 120 ALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSE 199 (302)
T ss_pred EcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccc
Confidence 55667777654322 111111 0 112233333333333345666676643334444432 1100 0011
Q ss_pred CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001363 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
.......++..-+++.+|++- +......|.......+ .+. .. ....++++. ..++++-+. ..|.|
T Consensus 200 ~~~~~p~~i~~l~~~e~Llc~------~~~~v~Vn~~G~~~~r~~~l~-w~---~~p~~~~~~--~pyll~~~~-~~iev 266 (302)
T smart00036 200 ETSLKPISVVQVPRDEFLLCY------DEFGVFVNLYGKRRSRNPILH-WE---FMPESFAYH--SPYLLAFHD-NGIEI 266 (302)
T ss_pred ccccCceEEEEECCCeEEEEE------CcEEEEEeCCCCccccceEEE-cC---CcccEEEEE--CCEEEEEcC-CcEEE
Confidence 111023333334455666554 2234444543212211 121 12 345566665 367777654 45999
Q ss_pred EECCCCceEEEEeC
Q 001363 605 WDMNKVQLLTTIDA 618 (1092)
Q Consensus 605 wd~~~~~~~~~~~~ 618 (1092)
+++.++..++++..
T Consensus 267 r~l~~~~l~q~i~~ 280 (302)
T smart00036 267 RSIKTGELLQELAD 280 (302)
T ss_pred EECCCCceEEEEec
Confidence 99999999888864
Done!