Query 001363
Match_columns 1092
No_of_seqs 898 out of 5040
Neff 10.6
Searched_HMMs 29240
Date Tue Mar 26 00:19:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 6.4E-69 2.2E-73 648.7 78.2 567 327-1006 9-577 (577)
2 2ymu_A WD-40 repeat protein; u 100.0 4.7E-67 1.6E-71 632.4 78.6 565 391-1059 11-577 (577)
3 1nr0_A Actin interacting prote 100.0 8.1E-67 2.8E-71 630.3 75.6 577 332-1008 16-610 (611)
4 3sfz_A APAF-1, apoptotic pepti 100.0 6.4E-65 2.2E-69 670.4 65.2 619 326-1062 607-1249(1249)
5 1nr0_A Actin interacting prote 100.0 1.4E-63 4.9E-68 602.0 71.0 573 393-1061 15-610 (611)
6 1pgu_A Actin interacting prote 100.0 1.2E-60 4.1E-65 581.7 69.0 559 331-1010 15-615 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 2E-58 6.9E-63 608.4 70.6 587 392-1065 611-1210(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 1.4E-57 4.9E-62 568.2 70.2 593 328-1018 11-792 (902)
9 1pgu_A Actin interacting prote 100.0 4.2E-57 1.4E-61 550.4 64.9 556 392-1061 14-613 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 3.7E-56 1.2E-60 555.5 59.6 597 392-1066 13-787 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 9.3E-48 3.2E-52 484.2 60.2 559 325-1010 4-602 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 3.2E-46 1.1E-50 470.2 59.4 479 392-964 9-502 (814)
13 1vyh_C Platelet-activating fac 100.0 1.3E-45 4.5E-50 421.8 40.3 288 328-651 102-409 (410)
14 1got_B GT-beta; complex (GTP-b 100.0 1E-39 3.5E-44 363.3 45.1 296 323-650 44-340 (340)
15 2pbi_B Guanine nucleotide-bind 100.0 1.4E-39 4.7E-44 363.8 45.0 298 324-650 54-354 (354)
16 3ow8_A WD repeat-containing pr 100.0 6.5E-40 2.2E-44 360.6 41.6 294 325-652 23-320 (321)
17 2ynn_A Coatomer subunit beta'; 100.0 3.8E-39 1.3E-43 352.3 40.1 293 325-653 4-302 (304)
18 3frx_A Guanine nucleotide-bind 100.0 7.5E-39 2.6E-43 352.5 41.0 301 325-654 8-318 (319)
19 3iz6_a 40S ribosomal protein R 100.0 2.1E-39 7.1E-44 366.7 35.7 306 324-655 56-377 (380)
20 1vyh_C Platelet-activating fac 100.0 2.1E-38 7.3E-43 362.0 39.1 286 392-715 104-409 (410)
21 4g56_B MGC81050 protein; prote 100.0 3.6E-39 1.2E-43 360.6 31.8 320 701-1065 19-346 (357)
22 1got_B GT-beta; complex (GTP-b 100.0 9.6E-38 3.3E-42 347.3 43.0 286 392-714 51-340 (340)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.4E-38 1.9E-42 349.9 40.4 306 325-658 6-340 (345)
24 3ow8_A WD repeat-containing pr 100.0 8.3E-38 2.9E-42 343.8 39.0 288 392-715 28-319 (321)
25 4ery_A WD repeat-containing pr 100.0 4.3E-37 1.5E-41 338.2 44.3 295 325-652 14-311 (312)
26 4g56_B MGC81050 protein; prote 100.0 3.9E-38 1.3E-42 352.3 34.6 295 330-654 38-344 (357)
27 4gqb_B Methylosome protein 50; 100.0 1.4E-37 4.9E-42 344.2 37.8 299 331-654 27-332 (344)
28 4gqb_B Methylosome protein 50; 100.0 6.4E-38 2.2E-42 347.1 34.2 296 733-1063 29-332 (344)
29 1r5m_A SIR4-interacting protei 100.0 4.3E-37 1.5E-41 355.0 39.5 334 332-716 43-424 (425)
30 2pbi_B Guanine nucleotide-bind 100.0 1.5E-36 5.2E-41 339.1 42.3 287 392-714 60-354 (354)
31 2hes_X YDR267CP; beta-propelle 100.0 1.2E-36 4E-41 336.8 40.4 296 325-653 5-328 (330)
32 2xzm_R RACK1; ribosome, transl 100.0 8.7E-37 3E-41 340.2 39.1 302 324-654 11-341 (343)
33 1k32_A Tricorn protease; prote 100.0 1.6E-35 5.4E-40 379.8 55.4 523 333-1011 13-639 (1045)
34 2ynn_A Coatomer subunit beta'; 100.0 2E-36 7E-41 330.7 40.3 268 392-674 9-280 (304)
35 1erj_A Transcriptional repress 100.0 2.3E-36 8E-41 343.4 42.2 303 332-653 62-389 (393)
36 3iz6_a 40S ribosomal protein R 100.0 3.4E-37 1.2E-41 348.6 32.3 290 392-716 62-374 (380)
37 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.4E-36 1.1E-40 335.4 39.5 301 732-1065 13-338 (345)
38 4aow_A Guanine nucleotide-bind 100.0 6.1E-36 2.1E-40 333.9 41.8 303 325-655 29-339 (340)
39 1gxr_A ESG1, transducin-like e 100.0 6.2E-36 2.1E-40 333.3 41.6 324 333-763 8-335 (337)
40 3frx_A Guanine nucleotide-bind 100.0 1.6E-35 5.5E-40 325.9 44.0 297 391-765 12-317 (319)
41 2pm9_A Protein WEB1, protein t 100.0 3E-37 1E-41 355.2 30.0 353 335-717 13-414 (416)
42 1r5m_A SIR4-interacting protei 100.0 1.8E-35 6.2E-40 341.4 44.6 343 466-917 26-425 (425)
43 4ery_A WD repeat-containing pr 100.0 2.6E-35 9E-40 324.0 42.5 291 391-716 18-311 (312)
44 2hes_X YDR267CP; beta-propelle 100.0 4.9E-35 1.7E-39 323.7 43.8 306 564-1009 3-328 (330)
45 1k32_A Tricorn protease; prote 100.0 3.2E-34 1.1E-38 367.6 56.6 529 395-1064 13-639 (1045)
46 1erj_A Transcriptional repress 100.0 4.6E-35 1.6E-39 332.7 40.5 290 394-717 62-389 (393)
47 3gre_A Serine/threonine-protei 100.0 8E-36 2.7E-40 345.6 34.6 382 341-914 34-437 (437)
48 3vl1_A 26S proteasome regulato 100.0 1.4E-35 4.7E-40 341.8 35.7 346 398-917 58-419 (420)
49 1gxr_A ESG1, transducin-like e 100.0 1.9E-34 6.4E-39 321.3 42.8 321 439-915 7-335 (337)
50 3vl1_A 26S proteasome regulato 100.0 9.5E-36 3.2E-40 343.1 31.9 350 335-764 57-418 (420)
51 3dm0_A Maltose-binding peripla 100.0 5.9E-35 2E-39 358.6 40.8 299 326-652 374-692 (694)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.4E-34 1.9E-38 330.7 46.3 328 326-765 110-442 (445)
53 2pm9_A Protein WEB1, protein t 100.0 3E-36 1E-40 346.9 26.5 337 579-1010 13-415 (416)
54 2xzm_R RACK1; ribosome, transl 100.0 3.9E-34 1.3E-38 318.7 42.3 289 390-717 15-340 (343)
55 3v7d_B Cell division control p 100.0 7.7E-34 2.6E-38 331.7 45.4 305 324-673 111-442 (464)
56 3ei3_B DNA damage-binding prot 100.0 1.8E-34 6.2E-39 327.7 38.2 298 324-653 63-382 (383)
57 1sq9_A Antiviral protein SKI8; 100.0 2.5E-34 8.4E-39 328.6 38.1 299 325-654 7-396 (397)
58 2j04_B YDR362CP, TAU91; beta p 100.0 6.1E-36 2.1E-40 347.7 24.4 341 326-716 126-516 (524)
59 3zwl_B Eukaryotic translation 100.0 1.7E-33 5.9E-38 317.9 42.8 292 326-655 24-348 (369)
60 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-33 4.8E-38 310.6 39.7 293 324-658 8-301 (313)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.1E-33 1.7E-37 322.5 45.8 319 392-875 114-442 (445)
62 3i2n_A WD repeat-containing pr 100.0 4.2E-34 1.5E-38 321.3 34.4 300 323-655 7-355 (357)
63 2j04_B YDR362CP, TAU91; beta p 100.0 4.8E-35 1.6E-39 340.2 27.3 350 395-875 132-517 (524)
64 3v7d_B Cell division control p 100.0 1.1E-32 3.6E-37 322.1 45.7 346 567-1006 113-460 (464)
65 4aow_A Guanine nucleotide-bind 100.0 1E-32 3.4E-37 307.8 43.0 299 392-766 34-338 (340)
66 3gre_A Serine/threonine-protei 100.0 9.5E-34 3.2E-38 328.1 35.6 275 322-657 50-363 (437)
67 3k26_A Polycomb protein EED; W 100.0 6.5E-34 2.2E-38 321.1 32.5 295 328-652 12-365 (366)
68 4h5i_A Guanine nucleotide-exch 100.0 3.4E-33 1.2E-37 313.0 37.5 203 801-1010 132-344 (365)
69 4e54_B DNA damage-binding prot 100.0 2.7E-34 9.3E-39 331.5 29.2 303 326-656 111-433 (435)
70 4a11_B DNA excision repair pro 100.0 2.5E-33 8.5E-38 321.5 34.0 348 555-1061 23-404 (408)
71 1k8k_C P40, ARP2/3 complex 41 100.0 5.4E-33 1.9E-37 314.3 36.3 291 330-654 4-362 (372)
72 4e54_B DNA damage-binding prot 100.0 1.8E-33 6.1E-38 324.6 32.1 302 569-1013 113-434 (435)
73 3ei3_B DNA damage-binding prot 100.0 6.9E-33 2.3E-37 314.7 36.4 307 559-1009 57-382 (383)
74 3zwl_B Eukaryotic translation 100.0 3.7E-32 1.3E-36 307.0 42.0 289 390-718 26-347 (369)
75 4h5i_A Guanine nucleotide-exch 100.0 4.1E-33 1.4E-37 312.4 32.2 299 335-654 15-344 (365)
76 4aez_A CDC20, WD repeat-contai 100.0 2E-32 7E-37 312.3 38.7 299 328-659 85-386 (401)
77 2pm7_B Protein transport prote 100.0 1.6E-32 5.5E-37 298.6 35.3 252 327-608 2-284 (297)
78 3dwl_C Actin-related protein 2 100.0 4.8E-34 1.7E-38 323.5 23.1 289 330-651 7-377 (377)
79 4gga_A P55CDC, cell division c 100.0 8.9E-32 3E-36 309.0 42.1 289 336-661 107-403 (420)
80 2j04_A TAU60, YPL007P, hypothe 100.0 5.1E-33 1.7E-37 311.5 29.7 317 331-754 12-350 (588)
81 3dm0_A Maltose-binding peripla 100.0 1.1E-31 3.7E-36 329.5 44.2 212 435-655 376-594 (694)
82 1sq9_A Antiviral protein SKI8; 100.0 3.2E-32 1.1E-36 311.0 36.9 296 478-918 9-396 (397)
83 2pm7_B Protein transport prote 100.0 4.9E-32 1.7E-36 294.8 33.9 252 392-653 5-285 (297)
84 4a11_B DNA excision repair pro 100.0 8.6E-32 3E-36 308.7 37.8 347 325-716 34-404 (408)
85 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-33 3.6E-38 317.1 21.0 330 528-997 14-349 (588)
86 1k8k_C P40, ARP2/3 complex 41 100.0 7.6E-32 2.6E-36 304.9 34.8 290 392-717 4-361 (372)
87 4ggc_A P55CDC, cell division c 100.0 1.2E-30 4.1E-35 287.8 43.3 282 337-654 28-316 (318)
88 3dwl_C Actin-related protein 2 100.0 1.9E-32 6.4E-37 310.4 27.3 245 733-1008 10-280 (377)
89 3dw8_B Serine/threonine-protei 100.0 1.5E-31 5.2E-36 310.8 33.9 301 332-652 26-445 (447)
90 3bg1_A Protein SEC13 homolog; 100.0 3.7E-32 1.3E-36 298.6 26.7 253 328-608 7-292 (316)
91 3k26_A Polycomb protein EED; W 100.0 1.4E-31 4.9E-36 301.8 31.8 294 390-716 12-365 (366)
92 3i2n_A WD repeat-containing pr 100.0 3.4E-31 1.2E-35 297.6 33.7 293 390-716 12-352 (357)
93 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-30 5.3E-35 286.2 38.2 281 391-719 13-298 (313)
94 1yfq_A Cell cycle arrest prote 100.0 3.8E-31 1.3E-35 295.3 32.0 287 328-650 5-321 (342)
95 1p22_A F-BOX/WD-repeat protein 100.0 9.7E-31 3.3E-35 302.0 36.2 280 328-657 127-418 (435)
96 3mmy_A MRNA export factor; mRN 100.0 8.6E-31 3E-35 295.6 35.1 294 322-651 27-344 (368)
97 4gga_A P55CDC, cell division c 100.0 1.3E-30 4.4E-35 299.3 36.8 281 398-719 107-397 (420)
98 3bg1_A Protein SEC13 homolog; 100.0 3E-31 1E-35 291.3 25.5 251 391-653 8-293 (316)
99 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-30 4.5E-35 297.7 31.7 298 335-655 35-344 (402)
100 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-30 7.3E-35 290.0 32.2 307 327-660 4-344 (351)
101 4aez_A CDC20, WD repeat-contai 100.0 4.9E-30 1.7E-34 292.6 33.5 285 392-718 87-381 (401)
102 4ggc_A P55CDC, cell division c 100.0 2E-29 6.8E-34 278.0 36.7 277 399-716 28-314 (318)
103 3dw8_B Serine/threonine-protei 100.0 5.7E-30 2E-34 297.5 33.4 253 395-657 27-377 (447)
104 3jrp_A Fusion protein of prote 100.0 8.1E-30 2.8E-34 289.0 33.0 255 392-656 7-290 (379)
105 3jrp_A Fusion protein of prote 100.0 7.3E-30 2.5E-34 289.3 32.1 263 326-613 3-291 (379)
106 1p22_A F-BOX/WD-repeat protein 100.0 1.9E-29 6.3E-34 291.3 35.9 275 393-719 130-416 (435)
107 3mmy_A MRNA export factor; mRN 100.0 6.9E-29 2.3E-33 280.0 36.5 290 392-716 35-345 (368)
108 1yfq_A Cell cycle arrest prote 100.0 2.4E-29 8.1E-34 280.7 31.5 285 392-715 7-322 (342)
109 3f3f_A Nucleoporin SEH1; struc 100.0 4.9E-29 1.7E-33 278.8 32.4 295 391-718 6-338 (351)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.3E-28 7.9E-33 283.3 36.6 306 335-653 5-391 (450)
111 1l0q_A Surface layer protein; 100.0 1.7E-27 5.9E-32 271.0 41.7 350 347-753 2-366 (391)
112 3vu4_A KMHSV2; beta-propeller 100.0 1.2E-28 4E-33 275.3 30.5 282 326-653 11-336 (355)
113 1l0q_A Surface layer protein; 100.0 9.7E-27 3.3E-31 264.8 43.8 328 457-953 4-364 (391)
114 2aq5_A Coronin-1A; WD40 repeat 100.0 2.4E-28 8.2E-33 279.0 29.7 285 397-716 35-341 (402)
115 2w18_A PALB2, fancn, partner a 100.0 2.3E-27 7.8E-32 249.3 33.0 270 636-1007 56-355 (356)
116 3bws_A Protein LP49; two-domai 100.0 2.4E-26 8.2E-31 265.6 44.7 355 395-917 26-432 (433)
117 2w18_A PALB2, fancn, partner a 100.0 1.3E-26 4.5E-31 243.5 38.2 293 444-915 42-355 (356)
118 3jro_A Fusion protein of prote 100.0 1.1E-28 3.7E-33 304.1 25.6 260 327-611 2-287 (753)
119 2xyi_A Probable histone-bindin 100.0 9.1E-28 3.1E-32 276.2 31.5 256 327-610 121-411 (430)
120 3jro_A Fusion protein of prote 100.0 1.3E-28 4.3E-33 303.5 26.0 255 391-655 4-287 (753)
121 3bws_A Protein LP49; two-domai 100.0 1.1E-26 3.9E-31 268.3 40.8 300 397-764 123-431 (433)
122 3vu4_A KMHSV2; beta-propeller 100.0 4E-27 1.4E-31 262.9 33.9 299 392-719 15-338 (355)
123 3lrv_A PRE-mRNA-splicing facto 100.0 2.5E-27 8.7E-32 263.7 30.8 278 448-917 43-333 (343)
124 2xyi_A Probable histone-bindin 100.0 1E-26 3.5E-31 267.4 35.2 257 387-654 119-411 (430)
125 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.3E-27 2.5E-31 270.7 33.8 265 397-674 5-364 (450)
126 3lrv_A PRE-mRNA-splicing facto 100.0 8.3E-28 2.8E-32 267.7 24.0 271 340-652 42-332 (343)
127 1nir_A Nitrite reductase; hemo 100.0 1E-25 3.4E-30 264.4 41.1 345 341-885 144-524 (543)
128 1nir_A Nitrite reductase; hemo 100.0 4.7E-26 1.6E-30 267.2 38.3 343 536-974 144-522 (543)
129 4gq1_A NUP37; propeller, trans 100.0 1.6E-27 5.5E-32 270.2 21.0 276 328-651 83-387 (393)
130 4gq1_A NUP37; propeller, trans 99.9 6.7E-27 2.3E-31 265.1 20.8 322 343-715 27-387 (393)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.5E-25 1.2E-29 252.3 31.5 307 334-677 62-410 (415)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 1E-23 3.5E-28 240.2 32.4 306 441-899 62-410 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 2.4E-23 8.4E-28 258.2 37.5 303 334-652 36-412 (741)
134 2ecf_A Dipeptidyl peptidase IV 99.9 6E-23 2E-27 254.7 36.7 241 801-1061 150-458 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 2.8E-23 9.7E-28 256.9 28.0 310 336-676 18-421 (723)
136 1xfd_A DIP, dipeptidyl aminope 99.9 1E-22 3.4E-27 252.0 31.2 385 531-1016 18-450 (723)
137 3u4y_A Uncharacterized protein 99.9 2.3E-21 7.7E-26 214.7 37.4 280 340-654 3-305 (331)
138 2z3z_A Dipeptidyl aminopeptida 99.9 5.3E-21 1.8E-25 235.6 38.0 238 399-652 28-341 (706)
139 2z3z_A Dipeptidyl aminopeptida 99.9 2E-21 6.7E-26 239.5 33.9 243 804-1064 122-437 (706)
140 3vgz_A Uncharacterized protein 99.9 8E-21 2.7E-25 212.4 35.3 274 335-644 41-335 (353)
141 1ri6_A Putative isomerase YBHE 99.9 2.4E-20 8.1E-25 207.6 37.0 277 346-652 4-307 (343)
142 1ri6_A Putative isomerase YBHE 99.9 2.6E-20 9E-25 207.3 36.0 205 804-1012 85-313 (343)
143 1pby_B Quinohemoprotein amine 99.9 4E-20 1.4E-24 205.2 33.0 278 591-1018 2-319 (337)
144 1pby_B Quinohemoprotein amine 99.9 3.6E-20 1.2E-24 205.6 32.4 279 349-662 3-319 (337)
145 3u4y_A Uncharacterized protein 99.9 1.1E-19 3.6E-24 201.2 35.3 284 741-1064 4-306 (331)
146 3vgz_A Uncharacterized protein 99.9 2.8E-19 9.6E-24 199.8 37.4 249 396-659 40-309 (353)
147 2ojh_A Uncharacterized protein 99.9 1.2E-20 4.1E-25 205.0 25.1 257 352-644 17-293 (297)
148 1z68_A Fibroblast activation p 99.9 1.4E-20 4.9E-25 232.2 26.4 377 534-1017 20-451 (719)
149 3o4h_A Acylamino-acid-releasin 99.8 7.4E-20 2.5E-24 219.5 26.1 272 334-652 21-314 (582)
150 3hfq_A Uncharacterized protein 99.8 1.6E-18 5.6E-23 193.0 34.7 249 801-1066 38-321 (347)
151 2ojh_A Uncharacterized protein 99.8 1.5E-19 5.1E-24 196.3 25.6 245 324-600 31-293 (297)
152 1z68_A Fibroblast activation p 99.8 6.2E-20 2.1E-24 226.5 23.7 279 338-653 19-391 (719)
153 3hfq_A Uncharacterized protein 99.8 9.4E-19 3.2E-23 195.0 30.9 277 707-1013 15-323 (347)
154 3pe7_A Oligogalacturonate lyas 99.8 6.3E-19 2.2E-23 199.9 29.5 308 318-651 14-380 (388)
155 4a5s_A Dipeptidyl peptidase 4 99.8 8.3E-19 2.8E-23 216.0 31.8 278 335-655 17-355 (740)
156 3scy_A Hypothetical bacterial 99.8 3.5E-17 1.2E-21 183.3 41.2 312 539-987 11-360 (361)
157 3scy_A Hypothetical bacterial 99.8 1.4E-17 4.9E-22 186.5 37.8 300 342-672 9-359 (361)
158 1jmx_B Amine dehydrogenase; ox 99.8 4.5E-18 1.5E-22 189.7 32.3 283 338-661 3-333 (349)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 2.9E-19 9.9E-24 203.8 22.9 271 802-1086 36-357 (434)
160 4a5s_A Dipeptidyl peptidase 4 99.8 7.1E-18 2.4E-22 207.7 36.4 379 532-1016 19-456 (740)
161 2oit_A Nucleoporin 214KDA; NH2 99.8 1.5E-18 5.3E-23 197.7 27.1 221 334-565 36-279 (434)
162 3o4h_A Acylamino-acid-releasin 99.8 1.4E-18 4.9E-23 208.3 27.4 236 396-651 21-274 (582)
163 3pe7_A Oligogalacturonate lyas 99.8 6E-18 2E-22 191.8 28.1 257 392-656 26-332 (388)
164 1jmx_B Amine dehydrogenase; ox 99.8 2.2E-17 7.5E-22 184.1 31.4 297 496-885 8-335 (349)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.6E-17 1.2E-21 183.1 30.8 249 803-1063 40-342 (365)
166 2oiz_A Aromatic amine dehydrog 99.8 1.8E-16 6.2E-21 176.2 33.2 296 344-675 13-358 (361)
167 3c5m_A Oligogalacturonate lyas 99.8 5.5E-17 1.9E-21 184.4 28.5 299 323-654 19-385 (396)
168 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.4E-16 4.9E-21 178.2 31.0 250 395-654 38-342 (365)
169 2oiz_A Aromatic amine dehydrog 99.8 4.9E-16 1.7E-20 172.7 33.8 313 498-899 14-360 (361)
170 1qks_A Cytochrome CD1 nitrite 99.7 2.1E-14 7.1E-19 167.3 39.2 328 554-974 176-546 (567)
171 3azo_A Aminopeptidase; POP fam 99.7 1.4E-15 4.8E-20 185.6 29.2 295 328-658 17-374 (662)
172 2gop_A Trilobed protease; beta 99.7 3.5E-15 1.2E-19 165.9 29.0 262 336-652 16-330 (347)
173 1qks_A Cytochrome CD1 nitrite 99.7 9E-14 3.1E-18 162.0 40.8 325 588-1017 165-546 (567)
174 3c5m_A Oligogalacturonate lyas 99.7 9.7E-16 3.3E-20 174.1 22.3 244 399-656 38-332 (396)
175 1q7f_A NHL, brain tumor CG1071 99.7 2.7E-14 9.1E-19 153.8 32.0 242 801-1064 28-282 (286)
176 3fvz_A Peptidyl-glycine alpha- 99.7 1.2E-14 4E-19 159.9 28.8 248 802-1062 23-322 (329)
177 3fvz_A Peptidyl-glycine alpha- 99.7 1.8E-14 6.3E-19 158.3 30.4 248 335-609 24-322 (329)
178 4a2l_A BT_4663, two-component 99.7 2.9E-10 9.8E-15 141.0 71.8 586 335-1060 43-657 (795)
179 3azo_A Aminopeptidase; POP fam 99.7 1.7E-14 5.6E-19 176.1 30.8 249 392-650 19-320 (662)
180 1q7f_A NHL, brain tumor CG1071 99.7 1.9E-13 6.6E-18 147.0 34.1 248 331-610 26-281 (286)
181 4a2l_A BT_4663, two-component 99.6 4.8E-10 1.6E-14 139.1 69.4 535 335-1008 88-658 (795)
182 2dg1_A DRP35, lactonase; beta 99.6 1.2E-13 4.3E-18 152.3 30.0 274 335-644 6-301 (333)
183 2xdw_A Prolyl endopeptidase; a 99.6 1.7E-13 5.8E-18 167.9 31.8 250 394-655 122-416 (710)
184 3e5z_A Putative gluconolactona 99.6 2.3E-13 7.9E-18 147.2 29.1 249 325-612 18-289 (296)
185 2gop_A Trilobed protease; beta 99.6 3.4E-13 1.2E-17 149.8 30.1 285 580-1011 16-332 (347)
186 3v9f_A Two-component system se 99.6 8.9E-09 3E-13 127.4 72.3 588 335-1061 19-655 (781)
187 2xdw_A Prolyl endopeptidase; a 99.6 1.3E-13 4.3E-18 169.0 27.2 250 332-611 122-416 (710)
188 3no2_A Uncharacterized protein 99.6 1.2E-12 4.3E-17 138.6 30.4 245 349-629 7-272 (276)
189 3dsm_A Uncharacterized protein 99.6 4E-13 1.4E-17 147.2 27.1 278 355-661 15-309 (328)
190 2bkl_A Prolyl endopeptidase; m 99.6 2.4E-13 8.3E-18 166.0 27.1 246 394-655 118-399 (695)
191 2dg1_A DRP35, lactonase; beta 99.6 4E-12 1.4E-16 140.1 34.5 246 324-600 34-301 (333)
192 2z2n_A Virginiamycin B lyase; 99.6 1.8E-11 6E-16 132.5 38.8 285 330-654 10-296 (299)
193 3sjl_D Methylamine dehydrogena 99.6 7E-13 2.4E-17 144.0 26.8 288 339-663 37-373 (386)
194 2mad_H Methylamine dehydrogena 99.6 1.4E-11 4.8E-16 136.5 38.0 203 806-1016 128-357 (373)
195 3sjl_D Methylamine dehydrogena 99.6 4.6E-12 1.6E-16 137.5 32.8 204 805-1017 139-371 (386)
196 2mad_H Methylamine dehydrogena 99.6 1.5E-11 5.1E-16 136.3 37.8 281 341-659 27-356 (373)
197 3e5z_A Putative gluconolactona 99.5 1.4E-12 4.8E-17 141.0 28.4 238 392-654 23-287 (296)
198 3dsm_A Uncharacterized protein 99.5 1.8E-12 6.2E-17 142.0 28.9 272 706-1017 15-309 (328)
199 2z2n_A Virginiamycin B lyase; 99.5 7.2E-11 2.5E-15 127.7 40.6 237 735-1011 57-297 (299)
200 3v9f_A Two-component system se 99.5 1.3E-08 4.5E-13 125.8 65.5 536 335-1008 66-655 (781)
201 3no2_A Uncharacterized protein 99.5 2.2E-12 7.7E-17 136.6 26.8 246 813-1074 4-264 (276)
202 2bkl_A Prolyl endopeptidase; m 99.5 4.1E-13 1.4E-17 163.9 22.3 250 332-613 118-401 (695)
203 1rwi_B Serine/threonine-protei 99.5 2.8E-12 9.7E-17 136.5 24.8 241 336-612 25-267 (270)
204 1yr2_A Prolyl oligopeptidase; 99.5 2E-12 6.9E-17 158.9 26.9 247 394-655 160-443 (741)
205 2qc5_A Streptogramin B lactona 99.5 1.9E-10 6.5E-15 124.4 37.9 281 331-651 16-298 (300)
206 3c75_H MADH, methylamine dehyd 99.5 2.3E-11 7.8E-16 134.9 30.1 205 806-1016 180-409 (426)
207 1rwi_B Serine/threonine-protei 99.5 8E-12 2.7E-16 133.0 25.8 240 398-655 25-266 (270)
208 3c75_H MADH, methylamine dehyd 99.5 1.1E-11 3.8E-16 137.3 26.5 281 344-660 82-409 (426)
209 1yr2_A Prolyl oligopeptidase; 99.4 9.8E-12 3.3E-16 152.8 25.1 249 332-612 160-444 (741)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.3E-10 4.4E-15 126.7 28.8 250 331-609 14-299 (314)
211 2qc5_A Streptogramin B lactona 99.4 1.8E-09 6.1E-14 116.7 36.8 243 392-652 15-259 (300)
212 3hrp_A Uncharacterized protein 99.4 3.8E-10 1.3E-14 127.0 31.5 242 335-607 131-408 (409)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 2E-10 6.8E-15 125.2 27.6 245 736-1010 19-300 (314)
214 1xip_A Nucleoporin NUP159; bet 99.3 2.7E-10 9.3E-15 124.4 27.3 256 804-1085 39-330 (388)
215 3iuj_A Prolyl endopeptidase; h 99.3 2.8E-10 9.5E-15 138.4 28.5 252 332-613 126-409 (693)
216 3g4e_A Regucalcin; six bladed 99.3 8.7E-10 3E-14 118.8 29.1 229 736-998 14-261 (297)
217 3g4e_A Regucalcin; six bladed 99.3 1.1E-09 3.9E-14 117.8 29.0 233 331-598 9-261 (297)
218 3dr2_A Exported gluconolactona 99.3 7.2E-10 2.4E-14 120.0 26.8 240 324-602 34-300 (305)
219 3hrp_A Uncharacterized protein 99.3 1.3E-09 4.3E-14 122.7 29.5 248 803-1060 131-408 (409)
220 2qe8_A Uncharacterized protein 99.3 1E-10 3.6E-15 128.9 19.3 273 335-646 17-314 (343)
221 1mda_H Methylamine dehydrogena 99.3 2.3E-10 7.9E-15 124.8 21.5 272 348-663 33-356 (368)
222 3iuj_A Prolyl endopeptidase; h 99.3 3.2E-10 1.1E-14 137.8 24.8 245 394-655 126-407 (693)
223 4a0p_A LRP6, LRP-6, low-densit 99.3 1.6E-05 5.4E-10 93.8 65.7 532 410-1016 8-556 (628)
224 1mda_H Methylamine dehydrogena 99.2 3.1E-10 1.1E-14 123.8 21.4 196 806-1017 127-354 (368)
225 2qe8_A Uncharacterized protein 99.2 7E-10 2.4E-14 122.2 22.7 273 735-1059 17-318 (343)
226 1kb0_A Quinohemoprotein alcoho 99.2 1.1E-08 3.7E-13 122.9 34.1 199 457-660 79-353 (677)
227 2ghs_A AGR_C_1268P; regucalcin 99.2 8.6E-09 3E-13 112.4 29.8 224 336-598 50-291 (326)
228 1kb0_A Quinohemoprotein alcoho 99.2 7.4E-09 2.5E-13 124.3 31.9 227 822-1061 189-566 (677)
229 1yiq_A Quinohemoprotein alcoho 99.2 7.4E-09 2.5E-13 124.6 31.2 383 457-903 72-534 (689)
230 2ghs_A AGR_C_1268P; regucalcin 99.2 1.2E-08 3.9E-13 111.4 29.3 225 737-999 51-292 (326)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.2 7E-08 2.4E-12 107.9 36.4 151 457-619 55-217 (376)
232 3dr2_A Exported gluconolactona 99.2 8.2E-09 2.8E-13 111.6 27.4 232 394-645 42-299 (305)
233 3s94_A LRP-6, low-density lipo 99.2 2.2E-05 7.5E-10 92.6 58.5 521 417-1011 17-553 (619)
234 1xip_A Nucleoporin NUP159; bet 99.2 5.9E-10 2E-14 121.7 17.8 177 397-595 38-230 (388)
235 2ece_A 462AA long hypothetical 99.1 6.6E-08 2.3E-12 105.2 32.4 233 809-1050 88-399 (462)
236 3q7m_A Lipoprotein YFGL, BAMB; 99.1 7.1E-08 2.4E-12 107.9 34.2 277 350-662 56-346 (376)
237 1yiq_A Quinohemoprotein alcoho 99.1 1.8E-08 6.1E-13 121.2 29.2 290 350-663 73-515 (689)
238 2ece_A 462AA long hypothetical 99.1 5.6E-08 1.9E-12 105.8 27.6 239 341-597 88-399 (462)
239 3hxj_A Pyrrolo-quinoline quino 99.0 9.5E-09 3.3E-13 112.7 21.9 302 445-917 23-324 (330)
240 1fwx_A Nitrous oxide reductase 99.0 7.4E-08 2.5E-12 108.8 27.6 345 455-921 15-435 (595)
241 3hxj_A Pyrrolo-quinoline quino 99.0 1.1E-08 3.6E-13 112.3 20.4 269 338-661 23-291 (330)
242 2hz6_A Endoplasmic reticulum t 99.0 7.9E-10 2.7E-14 122.7 8.8 191 407-618 8-201 (369)
243 3ei3_A DNA damage-binding prot 98.9 0.00052 1.8E-08 86.4 61.1 609 338-1007 330-1060(1158)
244 3s94_A LRP-6, low-density lipo 98.9 0.00015 5.1E-09 85.5 52.8 458 334-876 39-552 (619)
245 2hz6_A Endoplasmic reticulum t 98.9 4.6E-10 1.6E-14 124.6 4.7 191 855-1070 8-200 (369)
246 1kv9_A Type II quinohemoprotei 98.9 1.2E-06 4.3E-11 104.9 32.3 375 457-905 68-520 (668)
247 4a0p_A LRP6, LRP-6, low-densit 98.9 0.00053 1.8E-08 80.8 64.8 535 348-972 8-555 (628)
248 1fwx_A Nitrous oxide reductase 98.9 1.1E-07 3.8E-12 107.4 21.3 235 812-1064 99-433 (595)
249 1npe_A Nidogen, entactin; glyc 98.9 6.9E-06 2.4E-10 86.4 34.3 224 397-635 36-263 (267)
250 3ei3_A DNA damage-binding prot 98.8 0.0011 3.8E-08 83.5 68.0 572 399-1063 329-1000(1158)
251 1npe_A Nidogen, entactin; glyc 98.8 1E-05 3.4E-10 85.1 34.7 258 408-676 1-262 (267)
252 1kv9_A Type II quinohemoprotei 98.8 2.2E-06 7.4E-11 102.8 32.6 194 822-1018 177-497 (668)
253 1w6s_A Methanol dehydrogenase 98.8 5.9E-06 2E-10 96.5 33.7 167 848-1018 245-512 (599)
254 2iwa_A Glutamine cyclotransfer 98.8 1.2E-06 4.1E-11 89.8 23.2 200 804-1011 22-239 (266)
255 2ad6_A Methanol dehydrogenase 98.7 2.3E-05 7.9E-10 91.7 35.8 378 457-903 64-523 (571)
256 1flg_A Protein (quinoprotein e 98.7 3.9E-05 1.3E-09 89.9 37.0 379 458-903 71-545 (582)
257 2iwa_A Glutamine cyclotransfer 98.7 3.1E-06 1E-10 86.8 23.7 217 833-1064 9-239 (266)
258 1w6s_A Methanol dehydrogenase 98.7 2.6E-05 8.8E-10 91.1 33.9 383 457-902 64-531 (599)
259 2ad6_A Methanol dehydrogenase 98.7 1.3E-05 4.4E-10 93.9 31.2 167 848-1018 239-503 (571)
260 1flg_A Protein (quinoprotein e 98.6 5.6E-05 1.9E-09 88.5 35.8 167 848-1018 250-525 (582)
261 3nol_A Glutamine cyclotransfer 98.6 6.3E-06 2.1E-10 83.2 21.8 186 444-643 45-245 (262)
262 3ott_A Two-component system se 98.5 0.006 2.1E-07 74.7 71.8 571 334-1061 21-625 (758)
263 2xe4_A Oligopeptidase B; hydro 98.5 1.4E-05 4.7E-10 97.5 27.0 248 336-612 175-461 (751)
264 3nol_A Glutamine cyclotransfer 98.5 7.1E-06 2.4E-10 82.8 20.0 184 805-998 45-244 (262)
265 2fp8_A Strictosidine synthase; 98.5 7.7E-05 2.6E-09 80.8 29.5 268 329-609 13-313 (322)
266 3nok_A Glutaminyl cyclase; bet 98.5 3.9E-05 1.3E-09 77.3 24.1 186 396-598 54-254 (268)
267 2fp8_A Strictosidine synthase; 98.5 3.8E-05 1.3E-09 83.3 26.5 244 393-653 15-313 (322)
268 3nok_A Glutaminyl cyclase; bet 98.5 4.4E-06 1.5E-10 84.2 17.2 183 804-997 56-253 (268)
269 2xbg_A YCF48-like protein; pho 98.5 0.00046 1.6E-08 74.6 34.8 234 802-1059 79-319 (327)
270 2p4o_A Hypothetical protein; p 98.4 0.0001 3.5E-09 79.1 28.7 228 397-643 32-278 (306)
271 1k3i_A Galactose oxidase precu 98.4 1E-05 3.4E-10 97.4 22.7 277 339-642 190-530 (656)
272 3v64_C Agrin; beta propeller, 98.4 0.00079 2.7E-08 73.4 35.2 249 334-617 33-283 (349)
273 3qqz_A Putative uncharacterize 98.4 0.00016 5.6E-09 73.5 27.3 207 328-562 20-251 (255)
274 2p4o_A Hypothetical protein; p 98.4 0.00014 4.6E-09 78.1 28.5 231 803-1053 32-279 (306)
275 3mbr_X Glutamine cyclotransfer 98.4 0.00015 5.3E-09 72.4 25.4 188 395-598 19-223 (243)
276 1k3i_A Galactose oxidase precu 98.4 6.7E-05 2.3E-09 90.1 27.4 121 534-655 190-325 (656)
277 3mbr_X Glutamine cyclotransfer 98.3 7.1E-05 2.4E-09 74.9 22.6 187 802-998 20-223 (243)
278 1ijq_A LDL receptor, low-densi 98.3 0.0013 4.4E-08 70.6 34.1 238 410-660 3-245 (316)
279 3v65_B Low-density lipoprotein 98.3 0.00066 2.3E-08 75.2 32.6 249 335-618 77-327 (386)
280 3v65_B Low-density lipoprotein 98.3 0.00083 2.8E-08 74.4 32.3 246 400-661 80-326 (386)
281 3v64_C Agrin; beta propeller, 98.3 0.0013 4.3E-08 71.8 33.2 248 398-661 35-283 (349)
282 3ott_A Two-component system se 98.3 0.022 7.6E-07 69.6 60.9 527 335-1008 63-625 (758)
283 3qqz_A Putative uncharacterize 98.3 0.00084 2.9E-08 68.3 28.9 217 838-1060 21-251 (255)
284 1ijq_A LDL receptor, low-densi 98.2 0.0022 7.4E-08 68.9 33.3 232 357-617 10-246 (316)
285 2xe4_A Oligopeptidase B; hydro 98.2 0.00021 7.2E-09 87.1 27.9 246 394-655 170-460 (751)
286 3p5b_L Low density lipoprotein 98.2 0.0024 8.3E-08 70.9 33.6 248 410-670 85-337 (400)
287 2xbg_A YCF48-like protein; pho 98.1 0.0046 1.6E-07 66.6 33.4 282 335-651 36-320 (327)
288 3tc9_A Hypothetical hydrolase; 98.1 0.00055 1.9E-08 76.9 26.7 246 804-1061 138-429 (430)
289 4hw6_A Hypothetical protein, I 98.1 0.00047 1.6E-08 77.5 25.4 248 804-1061 140-432 (433)
290 3tc9_A Hypothetical hydrolase; 98.0 0.0031 1E-07 70.8 29.3 239 336-608 138-429 (430)
291 3p5b_L Low density lipoprotein 98.0 0.0094 3.2E-07 66.1 32.9 250 338-617 76-328 (400)
292 4hw6_A Hypothetical protein, I 98.0 0.0021 7.3E-08 72.1 27.3 239 335-608 139-432 (433)
293 3sov_A LRP-6, low-density lipo 98.0 0.013 4.4E-07 62.6 31.9 239 410-661 6-246 (318)
294 3sov_A LRP-6, low-density lipo 97.9 0.014 4.6E-07 62.4 30.5 233 356-618 12-247 (318)
295 3m0c_C LDL receptor, low-densi 97.9 0.013 4.5E-07 70.5 33.4 238 410-660 397-639 (791)
296 3amr_A 3-phytase; beta-propell 97.8 0.0074 2.5E-07 63.6 25.9 197 814-1019 40-274 (355)
297 3kya_A Putative phosphatase; s 97.8 0.0065 2.2E-07 68.1 27.0 249 398-656 140-478 (496)
298 3m0c_C LDL receptor, low-densi 97.8 0.024 8.3E-07 68.2 33.7 251 336-617 386-640 (791)
299 3kya_A Putative phosphatase; s 97.7 0.017 5.9E-07 64.7 29.1 253 336-614 140-480 (496)
300 3amr_A 3-phytase; beta-propell 97.7 0.01 3.4E-07 62.6 25.4 193 457-660 42-271 (355)
301 2xzh_A Clathrin heavy chain 1; 97.6 0.082 2.8E-06 54.5 31.2 234 341-609 73-332 (365)
302 2p9w_A MAL S 1 allergenic prot 97.6 0.0073 2.5E-07 63.1 22.1 202 804-1009 14-265 (334)
303 3a9g_A Putative uncharacterize 97.6 0.02 7E-07 62.1 26.9 229 803-1050 29-330 (354)
304 1n7d_A LDL receptor, low-densi 97.6 0.00042 1.4E-08 83.1 14.5 234 417-662 385-623 (699)
305 2ism_A Putative oxidoreductase 97.5 0.016 5.6E-07 62.9 25.2 228 804-1050 32-333 (352)
306 1n7d_A LDL receptor, low-densi 97.5 0.00052 1.8E-08 82.3 14.1 205 803-1017 406-622 (699)
307 2xzh_A Clathrin heavy chain 1; 97.5 0.14 4.8E-06 52.8 34.3 231 807-1063 71-333 (365)
308 1bpo_A Protein (clathrin); cla 97.4 0.17 5.8E-06 54.4 29.5 236 340-610 71-332 (494)
309 1bpo_A Protein (clathrin); cla 97.3 0.24 8.3E-06 53.2 33.4 232 806-1063 69-332 (494)
310 2g8s_A Glucose/sorbosone dehyd 97.3 0.039 1.4E-06 59.8 24.3 237 804-1060 19-350 (353)
311 2p9w_A MAL S 1 allergenic prot 97.3 0.16 5.5E-06 53.0 27.0 170 332-519 10-216 (334)
312 2ism_A Putative oxidoreductase 97.2 0.11 3.6E-06 56.4 26.9 108 334-461 30-152 (352)
313 3sre_A PON1, serum paraoxonase 97.2 0.044 1.5E-06 58.7 23.1 207 398-617 51-308 (355)
314 2xtc_A F-box-like/WD repeat-co 97.2 0.00026 8.9E-09 56.5 3.9 35 1-35 1-35 (90)
315 3a9g_A Putative uncharacterize 97.2 0.28 9.7E-06 53.0 29.6 233 334-597 28-330 (354)
316 2vpj_A Kelch-like protein 12; 97.1 0.032 1.1E-06 59.2 20.5 234 813-1073 14-287 (301)
317 3pbp_A Nucleoporin NUP82; beta 97.1 0.029 9.8E-07 60.3 19.2 109 807-917 25-158 (452)
318 3ii7_A Kelch-like protein 7; p 97.1 0.044 1.5E-06 58.2 21.4 233 815-1074 13-282 (306)
319 2vpj_A Kelch-like protein 12; 97.0 0.037 1.3E-06 58.7 20.3 236 407-656 14-281 (301)
320 2xn4_A Kelch-like protein 2; s 96.9 0.089 3E-06 55.7 22.5 222 823-1071 30-283 (302)
321 3ii7_A Kelch-like protein 7; p 96.9 0.072 2.5E-06 56.5 21.0 235 409-657 13-276 (306)
322 2xn4_A Kelch-like protein 2; s 96.8 0.088 3E-06 55.7 21.4 235 408-656 16-279 (302)
323 2g8s_A Glucose/sorbosone dehyd 96.8 0.24 8.3E-06 53.5 25.0 236 397-640 18-340 (353)
324 4asc_A Kelch repeat and BTB do 96.8 0.13 4.5E-06 54.8 22.7 229 821-1074 11-287 (315)
325 3das_A Putative oxidoreductase 96.7 0.82 2.8E-05 48.6 29.8 99 805-905 204-326 (347)
326 1zgk_A Kelch-like ECH-associat 96.7 0.093 3.2E-06 55.7 20.2 236 811-1073 22-296 (308)
327 3sbq_A Nitrous-oxide reductase 96.7 0.73 2.5E-05 51.2 26.3 113 804-919 324-480 (638)
328 4asc_A Kelch repeat and BTB do 96.6 0.17 5.7E-06 53.9 21.9 232 411-657 8-281 (315)
329 3sre_A PON1, serum paraoxonase 96.5 0.48 1.6E-05 50.7 24.0 175 864-1052 81-287 (355)
330 1tl2_A L10, protein (tachylect 96.3 0.034 1.2E-06 53.8 12.1 143 855-1008 3-162 (236)
331 1zgk_A Kelch-like ECH-associat 96.1 0.18 6.1E-06 53.5 18.3 238 405-656 22-290 (308)
332 1xi4_A Clathrin heavy chain; a 96.1 0.29 1E-05 60.9 21.4 232 807-1062 70-331 (1630)
333 2woz_A Kelch repeat and BTB do 96.0 0.64 2.2E-05 49.4 22.1 227 419-658 25-292 (318)
334 2uvk_A YJHT; unknown function, 96.0 0.47 1.6E-05 51.4 21.4 239 812-1076 18-354 (357)
335 3pbp_A Nucleoporin NUP82; beta 96.0 0.35 1.2E-05 52.0 18.8 136 508-649 40-208 (452)
336 2be1_A Serine/threonine-protei 95.9 0.065 2.2E-06 56.8 13.2 198 857-1067 11-236 (339)
337 2woz_A Kelch repeat and BTB do 95.8 1.1 3.7E-05 47.5 22.9 224 823-1071 24-294 (318)
338 3das_A Putative oxidoreductase 95.8 2.5 8.4E-05 45.0 29.9 122 325-462 22-158 (347)
339 1tl2_A L10, protein (tachylect 95.8 0.091 3.1E-06 50.9 12.2 149 845-1007 42-206 (236)
340 1cru_A Protein (soluble quinop 95.3 1.7 6E-05 48.5 22.5 111 886-998 26-163 (454)
341 1xi4_A Clathrin heavy chain; a 95.2 0.57 1.9E-05 58.4 19.2 237 341-612 72-334 (1630)
342 2uvk_A YJHT; unknown function, 95.0 1.3 4.4E-05 47.9 20.3 142 866-1015 168-348 (357)
343 1cru_A Protein (soluble quinop 94.9 2.5 8.4E-05 47.2 22.4 163 844-1010 27-260 (454)
344 3s25_A Hypothetical 7-bladed b 94.5 5.4 0.00018 41.6 24.5 182 339-566 57-257 (302)
345 2be1_A Serine/threonine-protei 94.4 0.093 3.2E-06 55.6 8.6 194 457-658 12-236 (339)
346 1uuj_A Platelet-activating fac 94.3 0.033 1.1E-06 44.2 3.6 54 5-58 10-65 (88)
347 3sbq_A Nitrous-oxide reductase 94.0 5.4 0.00019 44.5 21.3 195 812-1010 140-409 (638)
348 3b7f_A Glycosyl hydrolase, BNR 93.0 12 0.00041 40.7 28.2 259 802-1070 54-378 (394)
349 2zwa_A Leucine carboxyl methyl 92.5 5.5 0.00019 47.4 20.7 196 812-1013 396-639 (695)
350 2wg3_C Hedgehog-interacting pr 91.4 21 0.00071 39.7 26.1 56 397-452 14-79 (463)
351 4hvt_A Ritya.17583.B, post-pro 91.3 28 0.00097 41.1 27.0 245 339-611 133-431 (711)
352 3s25_A Hypothetical 7-bladed b 91.0 16 0.00056 37.8 29.7 216 342-610 21-256 (302)
353 2zwa_A Leucine carboxyl methyl 90.2 10 0.00036 44.9 19.9 202 451-657 396-639 (695)
354 3qhy_B Beta-lactamase inhibito 89.9 15 0.00052 37.6 18.4 222 336-609 25-246 (282)
355 3q6k_A 43.2 kDa salivary prote 89.5 22 0.00076 38.0 19.5 171 466-639 124-340 (381)
356 4hvt_A Ritya.17583.B, post-pro 88.4 26 0.00087 41.5 21.1 241 404-652 137-429 (711)
357 3q6k_A 43.2 kDa salivary prote 87.9 16 0.00053 39.2 17.0 171 824-996 124-341 (381)
358 3b7f_A Glycosyl hydrolase, BNR 87.2 37 0.0012 36.8 22.1 206 856-1071 22-269 (394)
359 2j4b_A TAF5, transcription ini 82.6 1.1 3.8E-05 40.0 4.2 55 72-127 33-87 (138)
360 3qhy_B Beta-lactamase inhibito 82.3 47 0.0016 33.9 20.1 183 804-1009 64-246 (282)
361 3uc1_A DNA gyrase subunit A; D 80.6 59 0.002 34.0 25.8 158 802-966 94-279 (327)
362 2nxp_A Transcription initiatio 80.0 2 6.9E-05 39.4 5.1 57 72-128 52-108 (156)
363 2wg3_C Hedgehog-interacting pr 79.1 83 0.0028 34.8 30.2 105 804-908 15-160 (463)
364 4gq2_M Nucleoporin NUP120; bet 76.8 8.8 0.0003 47.4 11.1 42 979-1020 236-277 (950)
365 3no0_A DNA gyrase subunit A; D 75.7 73 0.0025 32.3 18.6 193 856-1061 35-245 (276)
366 3no0_A DNA gyrase subunit A; D 73.4 82 0.0028 31.9 20.9 192 809-1010 31-247 (276)
367 2j49_A Transcription initiatio 71.7 1.1 3.7E-05 40.6 0.9 34 67-102 31-64 (148)
368 3kci_A Probable E3 ubiquitin-p 70.4 1.2E+02 0.0041 32.5 26.7 162 737-916 107-292 (389)
369 4gq2_M Nucleoporin NUP120; bet 68.5 88 0.003 38.4 17.2 37 845-882 237-273 (950)
370 3kci_A Probable E3 ubiquitin-p 61.3 1.8E+02 0.006 31.2 26.3 194 805-1009 107-345 (389)
371 4gco_A Protein STI-1; structur 61.0 35 0.0012 29.5 8.7 100 13-119 20-125 (126)
372 1zi0_A DNA gyrase subunit A; b 60.3 1.6E+02 0.0054 30.3 27.0 151 745-917 108-277 (307)
373 2k9m_A RNA polymerase sigma fa 58.3 12 0.00042 32.8 5.0 91 2-104 18-122 (130)
374 3zwu_A Alkaline phosphatase PH 57.3 19 0.00066 41.1 7.7 60 938-997 477-549 (592)
375 4a9v_A PHOX; hydrolase, beta-p 57.3 26 0.00088 39.5 8.4 60 938-997 477-549 (592)
376 2wpv_A GET4, UPF0363 protein Y 56.5 21 0.00071 36.9 7.1 112 38-189 17-129 (312)
377 3mkr_A Coatomer subunit epsilo 56.4 33 0.0011 35.2 9.0 55 5-59 64-126 (291)
378 3f7f_A Nucleoporin NUP120; nuc 54.4 1.8E+02 0.0062 33.8 15.0 30 855-884 230-259 (729)
379 3lpz_A GET4 (YOR164C homolog); 52.6 26 0.0009 36.4 7.1 112 38-189 16-131 (336)
380 3f7f_A Nucleoporin NUP120; nuc 52.5 40 0.0014 39.1 9.3 37 980-1018 223-259 (729)
381 3mez_B Mannose-specific lectin 52.5 59 0.002 27.6 8.4 59 940-1009 26-84 (113)
382 4fhn_B Nucleoporin NUP120; pro 46.6 66 0.0023 40.6 11.0 37 845-882 239-275 (1139)
383 3uc1_A DNA gyrase subunit A; D 45.0 2.8E+02 0.0097 28.7 25.5 164 843-1012 94-282 (327)
384 2zux_A YESW protein; beta-prop 43.6 3.9E+02 0.013 29.9 26.6 165 440-619 177-410 (591)
385 4fhn_B Nucleoporin NUP120; pro 43.1 6.3 0.00022 50.0 0.9 42 980-1021 239-280 (1139)
386 1suu_A DNA gyrase subunit A; t 41.8 3.1E+02 0.01 28.2 27.6 109 745-875 113-231 (312)
387 4ga2_A E3 SUMO-protein ligase 40.5 1.4E+02 0.0047 26.5 9.6 94 21-121 13-111 (150)
388 3l6v_A GYRA, DNA gyrase subuni 40.2 3.6E+02 0.012 28.5 26.7 64 587-651 4-74 (370)
389 2d68_A FOP, FGFR1OP; alpha hel 40.1 28 0.00095 27.4 3.7 29 7-35 20-48 (82)
390 2cn3_A Xyloglucanase, beta-1,4 38.0 5.6E+02 0.019 30.1 38.3 62 579-641 23-91 (737)
391 3zwu_A Alkaline phosphatase PH 37.2 1E+02 0.0036 35.1 9.6 64 531-596 477-548 (592)
392 2vgx_A Chaperone SYCD; alterna 35.7 1.1E+02 0.0037 27.1 8.0 15 45-59 66-80 (148)
393 4a9v_A PHOX; hydrolase, beta-p 35.0 1.6E+02 0.0054 33.3 10.2 65 531-597 477-549 (592)
394 4asv_A Small glutamine-rich te 34.6 22 0.00075 28.4 2.4 19 1-19 15-33 (92)
395 2zux_A YESW protein; beta-prop 33.9 5.5E+02 0.019 28.8 26.2 296 333-656 177-535 (591)
396 1wp5_A Topoisomerase IV; broke 32.6 4.3E+02 0.015 27.2 25.5 237 812-1061 3-276 (323)
397 1vk8_A Hypothetical protein TM 32.4 5.1 0.00017 33.5 -1.6 35 25-60 38-72 (106)
398 3u4t_A TPR repeat-containing p 31.7 1.2E+02 0.0041 30.0 8.5 111 6-120 3-119 (272)
399 3bu8_A Telomeric repeat-bindin 31.4 88 0.003 29.7 6.2 102 68-189 108-209 (235)
400 2kck_A TPR repeat; tetratricop 30.3 59 0.002 26.3 4.9 55 44-102 50-105 (112)
401 1kdl_A YOPD protein; yersinia, 29.5 30 0.001 19.8 1.7 17 3-19 2-18 (26)
402 2xcb_A PCRH, regulatory protei 28.9 1.5E+02 0.0052 25.7 7.7 14 86-99 64-77 (142)
403 1zi0_A DNA gyrase subunit A; b 28.4 4.9E+02 0.017 26.5 29.6 158 802-966 94-277 (307)
404 2k9l_A RNA polymerase sigma fa 28.3 49 0.0017 25.7 3.5 36 2-37 27-63 (76)
405 2dba_A Smooth muscle cell asso 28.0 2.3E+02 0.008 24.1 9.0 16 44-59 75-90 (148)
406 3mkr_A Coatomer subunit epsilo 27.8 2.9E+02 0.0099 27.8 10.7 108 5-120 100-211 (291)
407 3upv_A Heat shock protein STI1 27.7 1.5E+02 0.0052 24.8 7.3 89 8-102 6-100 (126)
408 2lni_A Stress-induced-phosphop 27.6 2.5E+02 0.0084 23.3 8.8 85 11-101 22-111 (133)
409 4h3o_A Lectin; cadmium, plant 27.1 2.6E+02 0.0091 23.0 10.3 25 806-831 53-77 (105)
410 3gyz_A Chaperone protein IPGC; 27.1 1.2E+02 0.004 27.2 6.5 87 6-104 9-102 (151)
411 4gof_A Small glutamine-rich te 27.1 30 0.001 24.4 1.8 16 4-19 1-16 (52)
412 1na0_A Designed protein CTPR3; 26.6 2.4E+02 0.0083 22.8 8.5 103 8-117 11-119 (125)
413 3sz7_A HSC70 cochaperone (SGT) 26.1 1.4E+02 0.0047 26.8 7.0 89 7-101 12-106 (164)
414 3mez_A Mannose-specific lectin 26.0 2.6E+02 0.0088 23.4 8.0 88 890-1009 22-109 (111)
415 2zuy_A YESX protein; beta-prop 25.6 7.6E+02 0.026 27.8 25.5 43 579-621 368-416 (620)
416 3vtx_A MAMA; tetratricopeptide 25.3 2.2E+02 0.0076 25.7 8.6 14 46-59 51-64 (184)
417 3q49_B STIP1 homology and U bo 25.3 1.6E+02 0.0053 25.0 7.0 89 6-100 9-103 (137)
418 3hx6_A Type 4 fimbrial biogene 24.4 5.1E+02 0.017 29.1 11.9 76 986-1065 202-287 (570)
419 1elr_A TPR2A-domain of HOP; HO 24.1 1.9E+02 0.0065 23.9 7.3 95 8-102 6-107 (131)
420 3qou_A Protein YBBN; thioredox 23.4 2.7E+02 0.0092 28.0 9.4 94 21-121 133-231 (287)
421 1suu_A DNA gyrase subunit A; t 23.3 6.1E+02 0.021 25.9 29.2 117 844-966 100-231 (312)
422 2xz2_A CSTF-50, isoform B; RNA 22.6 93 0.0032 23.1 3.7 31 4-34 15-45 (66)
423 2ho1_A Type 4 fimbrial biogene 22.5 4.7E+02 0.016 24.8 11.0 110 6-120 71-186 (252)
424 1elw_A TPR1-domain of HOP; HOP 22.3 3E+02 0.01 21.9 8.7 99 11-116 10-113 (118)
425 3iug_A RHO/CDC42/RAC GTPase-ac 22.1 55 0.0019 32.1 3.5 39 8-49 40-78 (229)
426 2ho1_A Type 4 fimbrial biogene 22.1 3.7E+02 0.013 25.7 10.0 107 7-119 38-151 (252)
427 2nsz_A Programmed cell death p 22.1 97 0.0033 27.0 4.6 24 80-103 13-36 (129)
428 2ion_A PDCD4, programmed cell 21.8 96 0.0033 28.0 4.6 21 80-100 15-35 (152)
429 4d9s_A UVB-resistance protein 21.6 7.5E+02 0.026 26.3 33.5 199 845-1063 122-358 (406)
430 2vyi_A SGTA protein; chaperone 21.5 3.3E+02 0.011 22.2 8.6 89 8-102 14-108 (131)
431 2fo7_A Synthetic consensus TPR 21.0 2.3E+02 0.0079 23.3 7.3 54 43-102 44-97 (136)
432 2ibo_A Hypothetical protein SP 20.3 9.2 0.00031 32.0 -2.2 32 28-60 28-59 (104)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.4e-69 Score=648.73 Aligned_cols=567 Identities=22% Similarity=0.334 Sum_probs=490.7
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
.+.|+||++.|+|++|||||+ +||+|+.|++|+|||. +++.+.. +.+|...|.+++|+|
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fsp 67 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSP 67 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECT
T ss_pred eeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECC
Confidence 467999999999999999998 6899999999999995 6666654 778999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001363 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
||++||+++.|++|+|||+. ++.+ ..+.+|...|.+++|+||++ +|++++.|+.+++|+.. ........+|..
T Consensus 68 dg~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~ 140 (577)
T 2ymu_A 68 DGQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSS 140 (577)
T ss_dssp TSSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCC
Confidence 99999999999999999965 4433 37889999999999999999 89999999999999954 455667788999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
.+..+.+.+ ++..+++++.++.+++|+... ........+...+..+.++|+++++++++. ++.|++||. +++
T Consensus 141 ~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~ 212 (577)
T 2ymu_A 141 SVWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQ 212 (577)
T ss_dssp CEEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSC
T ss_pred ceeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCc
Confidence 999998855 667899999999999998543 445566678889999999999999999986 667999995 677
Q ss_pred EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE
Q 001363 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1092)
.+..+.+|. ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++++++++.|+.|
T Consensus 213 ~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 213 LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTV 286 (577)
T ss_dssp EEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 888888887 89999999999999999999999999996 56777777655 3468999999999999999999999
Q ss_pred EEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccc
Q 001363 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1092)
Q Consensus 647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~ 726 (1092)
++|+.. ++....+.+|...+.+++++ |+++.+++++.|+.+++|+...... ..
T Consensus 287 ~~w~~~-~~~~~~~~~h~~~v~~~~~~----------------------~~~~~l~t~~~d~~i~~w~~~~~~~---~~- 339 (577)
T 2ymu_A 287 KLWNRN-GQLLQTLTGHSSSVWGVAFS----------------------PDGQTIASASDDKTVKLWNRNGQHL---QT- 339 (577)
T ss_dssp EEEETT-SCEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTSCEE---EE-
T ss_pred EEEeCC-CcEEEEEecCCCCeEEEEEC----------------------CCCCEEEEEeCCCeEEEEeCCCCee---EE-
Confidence 999964 56778888999999999886 7888999999999999999753221 11
Q ss_pred ccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001363 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~ 806 (1092)
..+|...+.+++|+|+++.+++++.+|.+++|+... ..+.... +|...|.
T Consensus 340 ---~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~~~----~~~~~v~ 389 (577)
T 2ymu_A 340 ---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQTLT----GHSSSVR 389 (577)
T ss_dssp ---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEEEEE----CCSSCEE
T ss_pred ---EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEEec----CCCCCeE
Confidence 134788999999999999999999999999998432 1122211 3888999
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccc
Q 001363 807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 885 (1092)
+++|+||+++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|
T Consensus 390 ~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~ 466 (577)
T 2ymu_A 390 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGH 466 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC
Confidence 999999999999998 799999995 5788889999999999999999 8999999999999999996 46788899999
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEc
Q 001363 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA 964 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~ 964 (1092)
...|++++|+||+++|++++.|+.|++||... + .++...+|.. .|.+++|+|||++|++ +.|+.|++||.
T Consensus 467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS---CEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC---CEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 99999999999999999999999999999654 2 3444455554 7999999999999998 67899999996
Q ss_pred CCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001363 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd 1006 (1092)
+++++.. +.+|.+.|++++|+|||++|+|++.|++|++||
T Consensus 538 -~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 -NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 5777776 568999999999999999999999999999997
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.7e-67 Score=632.40 Aligned_cols=565 Identities=21% Similarity=0.317 Sum_probs=484.9
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
.|.||++.|++++|||||++||+|+.|++|+|||. +++.++ ++.+|.+.|++++|+||++ +|++++.|++|+||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~---~l~gh~~~V~~l~fspdg~--~las~~~d~~i~vW 84 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLW 84 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEE---EEECCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEE---EEeCCCCCEEEEEECCCCC--EEEEEeCCCEEEEE
Confidence 38899999999999999999999999999999996 455443 7889999999999999999 89999999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
| .+++.+..+.+|...|.+++|++ ++.+|++++.|+.+++|+... ........+...+..+.++|+++.++.++.
T Consensus 85 d-~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~- 159 (577)
T 2ymu_A 85 N-RNGQLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD- 159 (577)
T ss_dssp E-TTSCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEET-
T ss_pred E-CCCCEEEEEECCCCCEEEEEECC--CCCEEEEEcCCCceeeccccc-ceeeeccCCCCceeeeeeecCCccceeccc-
Confidence 9 57889999999999999999965 778999999999999999754 345566777889999999999999998875
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
+..+.+|+.. .........+. ..+..+.++|+++++++++.|+.|++||. +++.+..+..+. ..|.+++|
T Consensus 160 ---~~~~~~~~~~-~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~--~~v~~~~~ 229 (577)
T 2ymu_A 160 ---DKTVKLWNRN-GQLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAF 229 (577)
T ss_dssp ---TSEEEEECTT-SCEEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS--SCEEEEEE
T ss_pred ---ccceeccccc-eeeeeeccCCC---cceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCC--CCEEEEEE
Confidence 5568889865 44455555555 88999999999999999999999999996 567777777654 46899999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc
Q 001363 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 710 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 710 (1092)
+|++++|++++.|+.|++|+.. ++.+..+.+|...+.+++++ |+++.+++++.|+.+
T Consensus 230 s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~----------------------~d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 230 SPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFR----------------------PDGQTIASASDDKTV 286 (577)
T ss_dssp CTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCE
T ss_pred CCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEc----------------------CCCCEEEEEeCCCEE
Confidence 9999999999999999999964 56788888999999988886 788899999999999
Q ss_pred ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCc
Q 001363 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790 (1092)
Q Consensus 711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 790 (1092)
++|+..... .. ...+|...|.+++|+|+++.+++++.||.+++|+.....
T Consensus 287 ~~w~~~~~~---~~----~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----------------------- 336 (577)
T 2ymu_A 287 KLWNRNGQL---LQ----TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----------------------- 336 (577)
T ss_dssp EEEETTSCE---EE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------
T ss_pred EEEeCCCcE---EE----EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------
Confidence 999964211 11 113588899999999999999999999999999854321
Q ss_pred eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 001363 791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 869 (1092)
Q Consensus 791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~ 869 (1092)
+... . +|...+.+++|+|+++++++++ ++.+++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|+
T Consensus 337 ~~~~--~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 337 LQTL--T--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVK 410 (577)
T ss_dssp EEEE--C--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEE
T ss_pred eEEE--e--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEE
Confidence 2221 1 3888999999999999999998 699999995 5788889999999999999999 899999999999999
Q ss_pred EEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC
Q 001363 870 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949 (1092)
Q Consensus 870 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 949 (1092)
+||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||.... .+....+|.. .|.+++|+||++
T Consensus 411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~ 480 (577)
T 2ymu_A 411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQ 480 (577)
T ss_dssp EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSC
T ss_pred EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCC
Confidence 9995 57888999999999999999999999999999999999997642 2333344443 799999999999
Q ss_pred EEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCcc
Q 001363 950 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028 (1092)
Q Consensus 950 ~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1028 (1092)
+|++ +.|+.|++||. +++++.. +.+|...|++++|+|||++|++++.||.|++||. +++.+..+. .|.
T Consensus 481 ~las~~~d~~i~iw~~-~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--------~h~ 549 (577)
T 2ymu_A 481 TIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHS 549 (577)
T ss_dssp EEEEEETTSEEEEEET-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--------CCS
T ss_pred EEEEEeCCCEEEEEcC-CCCEEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--------CCC
Confidence 9999 57899999995 5777766 5689999999999999999999999999999996 577776665 245
Q ss_pred ccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001363 1029 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1029 ~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1059 (1092)
..|. +++|+| |+.+|++++.||+|++||
T Consensus 550 ~~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 550 SSVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CCEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 5565 678999 689999999999999997
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.1e-67 Score=630.32 Aligned_cols=577 Identities=15% Similarity=0.184 Sum_probs=477.1
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.+++.+.+++|+|||+ +||+++ +++|+|||+.+++.... +.+|...|++++|||||++|
T Consensus 16 ~~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~l 74 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC 74 (611)
T ss_dssp CCTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEE
Confidence 4577899999999998 578876 57999999998876654 77999999999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC----CcEEEEECCCCceeEEEecCCcC
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
|+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++ .|++++.+ +.|++|| +++.+..+.+|...
T Consensus 75 asg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~ 149 (611)
T 1nr0_A 75 ASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARA 149 (611)
T ss_dssp EEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSC
T ss_pred EEEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCC
Confidence 999999999999998665432 236789999999999999999 67777754 3566665 67778889999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
|++++|+|.. ...|++++.|++|++||..+.+....+..|...|.+++|+|||++|++++. ++.|++||..+++.
T Consensus 150 v~~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 150 MNSVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTK 224 (611)
T ss_dssp EEEEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCE
T ss_pred ceEEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcE
Confidence 9999997642 136999999999999999888888889999999999999999999999986 66799999999998
Q ss_pred EEEEe-------eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCC-CCCceEEEccCCCEEEE
Q 001363 568 KRTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAV 639 (1092)
Q Consensus 568 ~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~ 639 (1092)
+..+. +|. +.|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.| ++..+++
T Consensus 225 ~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s 299 (611)
T 1nr0_A 225 TGVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVS 299 (611)
T ss_dssp EEECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEE
T ss_pred eeeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEE
Confidence 88874 455 89999999999999999999999999999999998888654221 12334455 7889999
Q ss_pred EeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc
Q 001363 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 640 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~ 719 (1092)
++.|+.+++|+...+.....+.+|...|.+++++ |||+++++++.|+++++||+..+.
T Consensus 300 ~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp EETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTCC
T ss_pred EeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCCCc
Confidence 9999999999999988888889999999999996 789999999999999999987543
Q ss_pred CccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCC
Q 001363 720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 799 (1092)
Q Consensus 720 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 799 (1092)
... ....+|...|.+++|++++ .+++++.|+.+++|+......... . .....
T Consensus 358 ~~~-----~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~-~~~~~---- 409 (611)
T 1nr0_A 358 SNR-----VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------K-AVANK---- 409 (611)
T ss_dssp EEE-----CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------S-CCEEE----
T ss_pred eee-----ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------c-eeeee----
Confidence 211 1123588899999999877 588999999999998764321000 0 00001
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee-
Q 001363 800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV- 878 (1092)
Q Consensus 800 ~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~- 878 (1092)
......+++|+|+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| |+++||+|+.|++|++||+.++..
T Consensus 410 -~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~ 483 (611)
T 1nr0_A 410 -LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVS 483 (611)
T ss_dssp -CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEE
T ss_pred -cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCcee
Confidence 23346789999999988888899999999 344 45554 778899999999 899999999999999999987653
Q ss_pred -eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-Ee
Q 001363 879 -ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 955 (1092)
Q Consensus 879 -~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~ 955 (1092)
+.. .+|...|++++|||||++|++++.|++|++|++.+ ++... .....+|.. .|.+++|+|||++||+ +.
T Consensus 484 ~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~~---~V~~v~fspdg~~lasgs~ 556 (611)
T 1nr0_A 484 EVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHTA---KVACVSWSPDNVRLATGSL 556 (611)
T ss_dssp EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCSS---CEEEEEECTTSSEEEEEET
T ss_pred eeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeeccc---ceeEEEECCCCCEEEEEEC
Confidence 334 67999999999999999999999999999999987 33211 001222443 7999999999999999 68
Q ss_pred CCcEEEEEcCCceeee-eeccCC-CCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 956 ETHLAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 956 d~~i~lwd~~~~~~~~-~~~~~h-~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
|++|++||+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 557 D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 557 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 9999999998876332 446789 89999999999998 9999999999999974
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.4e-65 Score=670.36 Aligned_cols=619 Identities=14% Similarity=0.178 Sum_probs=513.7
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
....+.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s 666 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFS 666 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ceEEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEe
Confidence 4467889999999999999998 689999999999999999988765 77899999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001363 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
|||++||+++.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.
T Consensus 667 ~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~ 743 (1249)
T 3sfz_A 667 SDDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743 (1249)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred cCCCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence 999999999999999999999987655 67899999999999997655589999999999999999999999999999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------------CCCceEEEEEccCCCEEEEEecCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------------PGLGCTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------------~~~~i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
..|.+++|++ ++.++++++.||.|++||+.+......+.. ....+.+++|+|+|+.+++++
T Consensus 744 ~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---- 817 (1249)
T 3sfz_A 744 NSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA---- 817 (1249)
T ss_dssp SCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----
T ss_pred CCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----
Confidence 9999999965 668999999999999999988776554432 123678899999999999986
Q ss_pred CceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 553 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++.+.+||..++.....+. +|. ..+.+++|+|+++++++++.||.|++||+.++..+..+..|. ..|.+++|+
T Consensus 818 -~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~s 891 (1249)
T 3sfz_A 818 -KNKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFS 891 (1249)
T ss_dssp -TTEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEEC
T ss_pred -CCcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEEC
Confidence 4569999999999888776 444 899999999999999999999999999999999998887664 469999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001363 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1092)
|+++++++++.||.|++|+..+......... .......+ .+++..++.....+.+.
T Consensus 892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 947 (1249)
T 3sfz_A 892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVL--KQEIDVVF----------------------QENETMVLAVDNIRGLQ 947 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEEHHHHHSCCSSSE--EEEEEEEE----------------------ETTEEEEEEEESSSSEE
T ss_pred CCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeEEE----------------------cCCCcEEEEecCCcceE
Confidence 9999999999999999999764322111110 00011111 12334444444455555
Q ss_pred eeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCce
Q 001363 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791 (1092)
Q Consensus 712 lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 791 (1092)
++....... . ......+.+++++|+++.+++++.+|.+++|++.... ..
T Consensus 948 ~~~~~~~~~---~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~----------------------~~ 996 (1249)
T 3sfz_A 948 LIAGKTGQI---D------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR----------------------VF 996 (1249)
T ss_dssp EEEESSCCE---E------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS----------------------CE
T ss_pred EEecCcceE---E------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc----------------------ee
Confidence 555332111 0 1145679999999999999999999999999875432 12
Q ss_pred eeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 001363 792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 870 (1092)
Q Consensus 792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i 870 (1092)
.. +. +|...|.+++|+|+|+++++++ |+.|++||+.+++... +..|...+.+++|+| ++ .+++++.||.|++
T Consensus 997 ~~--~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 997 SS--GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKV 1069 (1249)
T ss_dssp EE--CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEE
T ss_pred ee--cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEE
Confidence 22 11 4889999999999999999998 7999999999988764 557899999999999 55 6778999999999
Q ss_pred EEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCE
Q 001363 871 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1092)
Q Consensus 871 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 950 (1092)
||+.+++.+..+.+|.+.|++++|+||+++|++++.||+|++||+.+++ .+....+|.. .|.+++|+|||++
T Consensus 1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~ 1141 (1249)
T 3sfz_A 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGIL 1141 (1249)
T ss_dssp EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSE
T ss_pred EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCE
Confidence 9999999999999999999999999999999999999999999999865 4455556554 7999999999999
Q ss_pred EEE-EeCCcEEEEEcCCceeeeee--------ccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccc
Q 001363 951 FLL-VHETHLAIYEAEELTCLKQW--------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021 (1092)
Q Consensus 951 la~-~~d~~i~lwd~~~~~~~~~~--------~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~ 1021 (1092)
|++ +.|+.|++||+.+++.+..+ ..+|.+.|++++|||||++|++++ |.|++||+.+++.+..+.
T Consensus 1142 lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~---- 1215 (1249)
T 3sfz_A 1142 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY---- 1215 (1249)
T ss_dssp EEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC----
T ss_pred EEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeee----
Confidence 999 57899999999999887664 256899999999999999999885 899999999998876554
Q ss_pred cCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001363 1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 1022 ~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
.|...|. +++|+| |+.+|++++.||.|++|++.+
T Consensus 1216 ----~~~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1216 ----TNGTNLK--KIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp ----CSSCCCC--CCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred ----ccCCccc--EEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 1334454 577898 588999999999999999864
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-63 Score=601.96 Aligned_cols=573 Identities=11% Similarity=0.114 Sum_probs=457.7
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001363 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
..+.+.+.+++|+|||++||+++ ++.|++|++.+++... .+.+|...|++++|+|||+ +|++|+.|++|+|||+
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~ 88 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDT 88 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEES
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeEC
Confidence 34678889999999999999997 4689999998876554 6889999999999999999 8999999999999998
Q ss_pred CCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEE
Q 001363 473 VTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLF 545 (1092)
Q Consensus 473 ~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~ 545 (1092)
.+++ ....+.+|.++|.+++|+| ++++|++++.+ +.|++|| .+.....+.+|...|.+++|+|++. .|+
T Consensus 89 ~~~~~~~~~~~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 89 TQTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp SSTTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred CCCcceeeEeecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEE
Confidence 7554 4567889999999999965 67889888865 3677776 4556667888999999999999997 588
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----C
Q 001363 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----G 620 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~ 620 (1092)
+++. ++.|++||..+++....+.+|. ..|.+++|+|++++|++++.|++|++||..+++.+..+... +
T Consensus 165 s~s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~ 237 (611)
T 1nr0_A 165 SGSD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237 (611)
T ss_dssp EEET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS
T ss_pred EEeC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccc
Confidence 8876 6679999999999999999888 89999999999999999999999999999999988887421 3
Q ss_pred CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccccc---CceeeeeecCCCccccccccCCceeecCCCCCC
Q 001363 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS---DNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 697 (1092)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 697 (1092)
+...|.+++|+|++++|++++.|++|++||+.+++....+..+. .....+. .+
T Consensus 238 h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 293 (611)
T 1nr0_A 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WT 293 (611)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------EC
T ss_pred cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------Ec
Confidence 44579999999999999999999999999999987776654321 1111111 24
Q ss_pred CccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccc
Q 001363 698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 777 (1092)
Q Consensus 698 ~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 777 (1092)
++.+++++.|+.+++|+....... ....+|...|.+++|+|+|+.|++++.|+.|++|++...
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~~------~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~----------- 356 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSID------QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG----------- 356 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----------
T ss_pred CCEEEEEeCCCcEEEEeCCCCCcc------eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-----------
Confidence 778999999999999997643211 112358899999999999999999999999999987543
Q ss_pred cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEE---ecCCCCCeEEEEEcCC
Q 001363 778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPH 854 (1092)
Q Consensus 778 ~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~ 854 (1092)
.+... + ..+|...|.+++|++++.++..+.|+.+++|+..++..... .........+++|+|
T Consensus 357 -----------~~~~~--~-~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 421 (611)
T 1nr0_A 357 -----------ISNRV--F-PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA- 421 (611)
T ss_dssp -----------CEEEC--S-SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-
T ss_pred -----------ceeee--c-ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-
Confidence 11111 1 12488999999999888655555589999999876543210 011234567899999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC
Q 001363 855 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 934 (1092)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 934 (1092)
++.+++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... +.. .+|..
T Consensus 422 dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~~ 492 (611)
T 1nr0_A 422 DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHPA 492 (611)
T ss_dssp TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECSS
T ss_pred CCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCCC
Confidence 78777776 467899998 344 55555 88899999999999999999999999999998754322 122 23333
Q ss_pred CCCCceEEEEccCCCEEEE-EeCCcEEEEEcCC-ceeeee-eccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001363 935 LAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 935 ~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~-~~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
.|.+++|||||++|++ +.|++|++||+.+ ++.... ...+|...|.+++|||||++|++++.|++|++|++.++.
T Consensus 493 ---~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 493 ---EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp ---CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred ---ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 7999999999999999 6889999999987 666554 344599999999999999999999999999999999875
Q ss_pred eEE-eeccccccCCCCc-cccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1012 VQC-RILSTAYLRPTTS-CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1012 ~~~-~~~~~~~~~~~~~-~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
... ... ..| ...|. +++|+| |+. |++++.||+|++|+++
T Consensus 570 ~~~~~~~-------~~h~~~~v~--~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 570 DHPIIIK-------GAHAMSSVN--SVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SCCEEET-------TSSTTSCEE--EEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred cccchhh-------ccCcccCee--EEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 321 111 113 34455 678888 455 9999999999999983
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-60 Score=581.66 Aligned_cols=559 Identities=11% Similarity=0.155 Sum_probs=484.7
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC----CeeEEeeeeeeecccccceeeEeeecCCCCc-EEEEEEC
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWS 405 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~-V~~l~~s 405 (1092)
..|.+.|++++|||||+ +||+++ ++.|+|||+.++ +.... +.+|... |.+++|+
T Consensus 15 ~~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~s 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFS 73 (615)
T ss_dssp CCCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEEC
T ss_pred CCccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEEC
Confidence 36888999999999999 577776 789999999988 65554 7789999 9999999
Q ss_pred C--CCCEEEEEeCCCEEEEEEccCCC-----cccceEEEcccccceeEEEEecCCCcEEEEEEeCC----CcEEEEECCC
Q 001363 406 P--DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVT 474 (1092)
Q Consensus 406 p--dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~ 474 (1092)
| |+++||+++.||.|++||+.++. .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| +
T Consensus 74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--T
T ss_pred cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--C
Confidence 9 99999999999999999997651 1123336778999999999999999 78888877 6788887 7
Q ss_pred CceeEEEecCCcCeEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCceEEecCCCC---ceEEEEEccC-CCEEEEEec
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGT 549 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~d-g~~l~~~~~ 549 (1092)
++.+..+.+|...|.+++|++ ++. ++++++.||.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 788899999999999999976 444 899999999999999999888888888888 9999999999 999999986
Q ss_pred CCCCceeEEEEeCCCCeEEEEE-e---eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC--CC
Q 001363 550 SKEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LP 623 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~ 623 (1092)
++.|++||+.+++.+..+ . .|. ..|.+++|+ ++.++++++.|+.|++||+.+++.+..+..+.. ..
T Consensus 228 ----dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 228 ----DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp ----TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred ----CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 566999999999999888 5 565 899999999 999999999999999999999999988876521 13
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
.+.++.|+ +++++++++.||.|++|++.+++.+..+.+|...+.++++ |. +++
T Consensus 300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-------------------------l~~ 352 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-------------------------LIS 352 (615)
T ss_dssp CEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-------------------------TEE
T ss_pred ceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-------------------------cEE
Confidence 45677775 8999999999999999999999999999999999998888 52 788
Q ss_pred eccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccc
Q 001363 704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1092)
Q Consensus 704 ~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 783 (1092)
++.|+.+++|++. .+. ..|...|.+++| +++..+++++.|+.+++|++....
T Consensus 353 ~~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~---------------- 404 (615)
T 1pgu_A 353 GSYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE---------------- 404 (615)
T ss_dssp EETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE----------------
T ss_pred ECCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc----------------
Confidence 9999999999976 111 458899999999 667789999999999999875432
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 001363 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863 (1092)
Q Consensus 784 ~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 863 (1092)
....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+ +++|++++
T Consensus 405 -----------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~ 463 (615)
T 1pgu_A 405 -----------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGL 463 (615)
T ss_dssp -----------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEE
T ss_pred -----------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEee
Confidence 1125788999999999999888999999999999988887 88899999998 67999999
Q ss_pred C-CCcEEEEEcCCceee-EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC-CcCCCCCce
Q 001363 864 D-DSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSET 940 (1092)
Q Consensus 864 ~-dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~ 940 (1092)
. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++ .+....+ |.. .|.
T Consensus 464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~h~~---~v~ 535 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRTS---KIN 535 (615)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCSS---CEE
T ss_pred cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc-----ceeEeecCCCC---cee
Confidence 9 999999999988766 7788899999999999999999999999999999999865 3344444 443 799
Q ss_pred EEEEcc----------CCCEEEE-EeCCcEEEEEcCCc-eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 941 HIQFHK----------DQTRFLL-VHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 941 ~l~~s~----------dg~~la~-~~d~~i~lwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
+++|+| ++++|++ +.|+.|++||+.++ +++.. +.+|...|++++|+|||+ |++++.||+|++|++.
T Consensus 536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 999999 9999999 57899999999988 55554 678999999999999999 9999999999999987
Q ss_pred CC
Q 001363 1009 NL 1010 (1092)
Q Consensus 1009 ~~ 1010 (1092)
++
T Consensus 614 ~~ 615 (615)
T 1pgu_A 614 LE 615 (615)
T ss_dssp --
T ss_pred cC
Confidence 53
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-58 Score=608.41 Aligned_cols=587 Identities=16% Similarity=0.187 Sum_probs=498.6
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|++||
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIWD 685 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999987555 7889999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.+++.+..+.+|...|.+++|++..++.++++++.||.|++||+.++.....+..|...|.+++|+|+++++++++.
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~-- 763 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA-- 763 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES--
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC--
Confidence 999999999999999999999988778889999999999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEeCCCCeEEEEEeecc----------ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
++.|++||+.+++....+.... .....+.+++|+|++..+++++ ++.+.+||..++.....+... +
T Consensus 764 --dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~-~ 839 (1249)
T 3sfz_A 764 --DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG-H 839 (1249)
T ss_dssp --SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-S
T ss_pred --CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-C
Confidence 6679999999998877665321 0123688899999999999987 689999999999988877632 2
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001363 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
...+.+++|+|+++++++++.||.|++|+..++.....+.+|...|.+++++ |+++.+
T Consensus 840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~~l 897 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGSSF 897 (1249)
T ss_dssp SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCCEE
Confidence 3578999999999999999999999999999999999999999999999996 788899
Q ss_pred eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001363 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 781 (1092)
++++.|+.+++|++......... .......+.+.+++..+++....+.+.++.....
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 954 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG--------------- 954 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC---------------
T ss_pred EEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCcc---------------
Confidence 99999999999997643322111 1223345667777777777777777777654322
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001363 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860 (1092)
Q Consensus 782 ~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 860 (1092)
..... +...+.+++|+|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++|+
T Consensus 955 -------~~~~~-------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~ 1019 (1249)
T 3sfz_A 955 -------QIDYL-------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLI 1019 (1249)
T ss_dssp -------CEEEE-------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEE
T ss_pred -------eEEEc-------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEE
Confidence 11111 456799999999999999998 69999999999999999999999999999999 899999
Q ss_pred EEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001363 861 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 861 sg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
+++.||.|++||+.+++.. .+.+|...|.+++|+|++ .+++++.||.|++||+.+++.. ....++.. .|.
T Consensus 1020 s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~~~~~~~---~v~ 1089 (1249)
T 3sfz_A 1020 SSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RDFTCHQG---TVL 1089 (1249)
T ss_dssp EECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EEEECCSS---CCC
T ss_pred EEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EEEcccCC---cEE
Confidence 9999999999999998876 456799999999999975 6788999999999999987633 33334443 799
Q ss_pred EEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccc
Q 001363 941 HIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus 941 ~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
+++|+|||+++++ +.|++|++||+.+++++.. ..+|...|++++|||||++|++++.||+|++||+.+++....+.+.
T Consensus 1090 ~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~ 1168 (1249)
T 3sfz_A 1090 SCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168 (1249)
T ss_dssp CEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCC
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccc
Confidence 9999999999998 5889999999999988876 5689999999999999999999999999999999999887665322
Q ss_pred cccCC-CCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001363 1020 AYLRP-TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1020 ~~~~~-~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
..... ..|...|. +++|+| |+.++++++ |.|++||+.....
T Consensus 1169 ~~~~~~~~~~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1169 SVEEGTATHGGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp C-------CCSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred cccccccccCceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 21111 12445555 788999 578888885 9999999976553
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-57 Score=568.17 Aligned_cols=593 Identities=11% Similarity=0.092 Sum_probs=450.7
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
....||.+.|++++|+|+|+ +||+|+.||+|+|||..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34459999999999999998 79999999999999988766543 224788999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee---------
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT--------- 478 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~--------- 478 (1092)
|++|++++.|++|++||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++||++++++.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987655 443 678899999999999 8999999999999999988764
Q ss_pred --EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------------------CCceEEEEEc
Q 001363 479 --YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYS 538 (1092)
Q Consensus 479 --~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~i~~~~~s 538 (1092)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 234678999999999774 34689999999999 9999998877766654 3579999999
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCCeEEEE--Ee---ecc----------ccCCceEEEEEc----CCC-CEEEEEeC
Q 001363 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFD----TAK-DQILAAGD 598 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~~~~~----~~~-~~l~~~s~ 598 (1092)
|+|++|++++. ++.|++||..+++.+.. +. .|. .+...|.+++|+ |++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999987 66799999999987654 21 121 123579999995 443 45666766
Q ss_pred C-----CcEEEEECC------------------CCceEEEEeCCCCCCCCceEEEcc----------CCCEEEEEeCCCe
Q 001363 599 D-----HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENR 645 (1092)
Q Consensus 599 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~ 645 (1092)
+ +.+.+|++. +++....+... +...+..+++.+ ++..+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899842 22334444321 123567777755 3457899999999
Q ss_pred EEEEECCCCceeee-------cccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001363 646 IKILETPESNSVDA-------AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 646 i~iw~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~ 718 (1092)
|++|++.++..... +..|...|+++++++ ...++|+....
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~---------------------------------~~~~~w~~~~~ 422 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS---------------------------------VPNKLWLGALS 422 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE---------------------------------EEHHHHHHHHH
T ss_pred EEEEECCCCCcccccccCCCcccccCCCeeEEEEEE---------------------------------cCHHHHHHHHh
Confidence 99999987744322 334455666666542 12344553221
Q ss_pred cCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecC--
Q 001363 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT-- 796 (1092)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l-- 796 (1092)
..... ..+..+|...+..++|+|+++.+++++.|++|++||+....... .. .....+
T Consensus 423 ~~~~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~---------~~~~~l~~ 481 (902)
T 2oaj_A 423 AAQNK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NA---------SFEVNLSR 481 (902)
T ss_dssp TTBCC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TB---------CEEEEHHH
T ss_pred cccCC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------Cc---------eEEeechh
Confidence 11111 11334577778889999999999999999999999987642100 00 000000
Q ss_pred -CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCc-----------------------------------------
Q 001363 797 -TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF----------------------------------------- 833 (1092)
Q Consensus 797 -~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~----------------------------------------- 833 (1092)
...+|...|.+++|+|||++||+++ ||+|+|||+.++
T Consensus 482 ~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (902)
T 2oaj_A 482 TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGV 561 (902)
T ss_dssp HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTC
T ss_pred hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCC
Confidence 0114888999999999999999998 799999999866
Q ss_pred ----eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeE-----eec-cccCCeEEEEEc-----CCC
Q 001363 834 ----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL 898 (1092)
Q Consensus 834 ----~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----pdg 898 (1092)
+++..+.+|.+.|++++||| || +||+|+.|++|+|||+.++..+. .+. +|.+.|++++|| |||
T Consensus 562 ~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg 639 (902)
T 2oaj_A 562 RQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDG 639 (902)
T ss_dssp SEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS
T ss_pred CCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCC
Confidence 24677889999999999999 88 99999999999999999877653 343 899999999999 886
Q ss_pred ---CEEEEEeCCCcEEEEEc---CCCceeeeeeeecCCCCcC--CCCCceEEE-Ec----------------------cC
Q 001363 899 ---NILVSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMT--LAPSETHIQ-FH----------------------KD 947 (1092)
Q Consensus 899 ---~~l~s~s~Dg~I~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~l~-~s----------------------~d 947 (1092)
++|++++.|++|++||+ .+++... .+.++.. ..+.|.+++ |+ ++
T Consensus 640 ~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 714 (902)
T 2oaj_A 640 YSSILMVCGTDMGEVITYKILPASGGKFDV-----QLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIP 714 (902)
T ss_dssp SEEEEEEEEETTSEEEEEEEEECGGGCEEE-----EEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCC
T ss_pred CcceEEEEEecCCcEEEEEEecCCCCcEEE-----EecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCC
Confidence 89999999999999999 5655322 2222211 113566666 65 45
Q ss_pred CCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEE---E------EecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 948 QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 948 g~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l---~------fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
+.+|++ .+..|+||++.++++.+.. ..|...+.++ . |+++|..|++++.||+|++|++.+++.+..+..
T Consensus 715 ~~~l~~-~~~~ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~ 792 (902)
T 2oaj_A 715 GIVLIT-GFDDIRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI 792 (902)
T ss_dssp EEEEEE-CSSEEEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred eEEEEE-eccceEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence 554444 4889999999999998875 4565666666 5 789999999999999999999999999988874
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.2e-57 Score=550.39 Aligned_cols=556 Identities=11% Similarity=0.109 Sum_probs=468.2
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC----CcccceEEEcccccc-eeEEEEec--CCCcEEEEEEeCC
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDD 464 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~-v~~~~~s~--d~~~l~l~s~~~d 464 (1092)
...|.+.|.+++|+|||++||+++ ++.|++||+.++ +... .+.+|... |++++|+| +++ +|++++.|
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~d 87 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDES 87 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETT
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCC
Confidence 346889999999999999999998 789999999987 4443 78899999 99999999 999 89999999
Q ss_pred CcEEEEECCCC--------ceeEEEecCCcCeEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCce
Q 001363 465 KTIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGC 532 (1092)
Q Consensus 465 ~~i~vwd~~~~--------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i 532 (1092)
|.|++||+.++ +.+..+..|..+|.+++|++ ++.+|++++.+ +.|++|| ..+....+..|...|
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI 163 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE
Confidence 99999999855 67788899999999999965 67899999988 6788887 566777888899999
Q ss_pred EEEEEccCCC-EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC---ceEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 001363 533 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 533 ~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~s~dg~i~iwd~ 607 (1092)
.+++|+|+++ .+++++. ++.|++||..+++.+..+.+|. . .|.+++|+|+ ++++++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp EEEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred EEEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999998 6888775 6779999999999999999887 6 8999999999 999999999999999999
Q ss_pred CCCceEEEEeCC--CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeeccccc----CceeeeeecCCCccccc
Q 001363 608 NKVQLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVTGA 681 (1092)
Q Consensus 608 ~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~ 681 (1092)
.+++.+..+... .+...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+. ..+.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 306 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA--------- 306 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE---------
T ss_pred CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe---------
Confidence 999999888221 223569999999 99999999999999999999998887776653 33333333
Q ss_pred cccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEE
Q 001363 682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW 761 (1092)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w 761 (1092)
++++.+++++.++.+++|++........ ..+|...|.+++| |+ +++++.||.+++|
T Consensus 307 --------------~~~~~l~~~~~~g~i~~~d~~~~~~~~~------~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w 362 (615)
T 1pgu_A 307 --------------TGNGRIISLSLDGTLNFYELGHDEVLKT------ISGHNKGITALTV-NP---LISGSYDGRIMEW 362 (615)
T ss_dssp --------------EETTEEEEEETTSCEEEEETTEEEEEEE------ECCCSSCEEEEET-TT---TEEEETTSCEEET
T ss_pred --------------CCCCeEEEEECCCCEEEEECCCCcEEEE------EeCCCCCEEEEEe-cC---cEEECCCCeEEEE
Confidence 3688899999999999999875332221 1348899999999 88 9999999999998
Q ss_pred eecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEec
Q 001363 762 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIM 840 (1092)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~ 840 (1092)
++. ++. .+|...|.+++| +++..+++++ |+.+++||+.+++...
T Consensus 363 ~~~-------------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~--- 407 (615)
T 1pgu_A 363 SSS-------------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS--- 407 (615)
T ss_dssp TTT-------------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS---
T ss_pred Ech-------------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC---
Confidence 753 011 148899999999 5566666666 8999999998765432
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCc
Q 001363 841 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWG 919 (1092)
Q Consensus 841 ~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iwd~~~~~ 919 (1092)
.+.+++++| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.+++
T Consensus 408 ----~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~ 478 (615)
T 1pgu_A 408 ----QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE 478 (615)
T ss_dssp ----CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE
T ss_pred ----CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcc
Confidence 678999999 88888877 88999999999999888887 88999999999 889999999 9999999999854
Q ss_pred eeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEec----------
Q 001363 920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC---------- 988 (1092)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~---------- 988 (1092)
... ....++.. .|.+++|+|+|++|++ +.|+.|++||+.+++.+..+...|...|++++|+|
T Consensus 479 ~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~ 551 (615)
T 1pgu_A 479 VSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI 551 (615)
T ss_dssp EEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CC
T ss_pred ccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccccc
Confidence 221 34444443 7999999999999999 57899999999999998875444999999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC-ceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 989 DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 989 dg~~l~t~~~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
|+++|++++.||+|++||+.++ +.+..+. .|...|. +++|+| ++. |++++.||.|++|++.
T Consensus 552 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~h~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALN--------AHKDGVN--NLLWET-PST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp SCCEEEEEETTSCEEEEESSCTTCCEEETT--------SSTTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC
T ss_pred CCCEEEEEcCCCcEEEEECCCCceechhhh--------cCccceE--EEEEcC-CCC-eEEecCCceEEEEeee
Confidence 9999999999999999999998 5665544 2445555 678888 467 9999999999999985
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-56 Score=555.48 Aligned_cols=597 Identities=9% Similarity=0.041 Sum_probs=438.3
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..+|...|.+++|+|+|++||+|+.||+|+||+..+++... ...|...|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 55799999999999999999999999999999988764332 235788999999999 77 799999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-----------EEecCCCCceEEEEEccC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN 540 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~i~~~~~s~d 540 (1092)
+.+++++..+. |...|++++|++ ++.+|++|+.||.|++||+++.... .....|..+|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999999886 778999999965 6789999999999999999876643 123557789999999996
Q ss_pred C-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeec---------------cccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001363 541 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 541 g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
+ ..+++++. ++.| +||+.+++.+..+..+ ..|...|.+++|+|++.+|++++.||+|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777654 6779 9999999999888766 112367999999999999999999999999
Q ss_pred EECCCCceEEEEeC-----CC-----------CCCCCceEEEcc----CC-CEEEEEeCC-----CeEEEEECCC-----
Q 001363 605 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPE----- 653 (1092)
Q Consensus 605 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~~-~~l~~~~~d-----g~i~iw~~~~----- 653 (1092)
||+.+++.+..... +. +...|.+++|++ ++ .++++++.+ +.+.+|++..
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99999988764221 21 123588999964 43 567777665 3788888431
Q ss_pred -------------Cceeeecc-cccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccccc
Q 001363 654 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 654 -------------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~ 719 (1092)
.+....+. .+...+..+.+.+.......+ ..++..+++++.|+++++|++..+.
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g------------~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG------------CHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH------------TBSCSEEEEEETTSCEEEEETTTCC
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCC------------CCCceeEEEEcCCCcEEEEECCCCC
Confidence 11122222 234455555544321110000 1345578888899999999985332
Q ss_pred Cccc-cccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCC
Q 001363 720 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798 (1092)
Q Consensus 720 ~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 798 (1092)
.... .........|...|.++++++... .+|+..... . +... ..+.
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~--~~l~- 432 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD--YLLK- 432 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC--CSCC-
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC--Cccc-
Confidence 1111 001111233567888888865432 234321100 0 0000 0122
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee--EE----ec-----CCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001363 799 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LT----IM-----PPSPTATSLAFNPHDNNVIAIGMDDS 866 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~--~~----~~-----~~~~~i~~l~~s~~d~~~lasg~~dg 866 (1092)
+|...+.+++|+||+++|++++ |++|++||+.++... .. +. +|...|.+++|+| |+++||+|+.||
T Consensus 433 -G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dg 510 (902)
T 2oaj_A 433 -GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETG 510 (902)
T ss_dssp -CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTS
T ss_pred -CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCc
Confidence 4777788899999999999998 899999999887421 11 11 7888999999999 999999999999
Q ss_pred cEEEEEcCCc---------------------------------------------eeeEeeccccCCeEEEEEcCCCCEE
Q 001363 867 TILIYNARSS---------------------------------------------EVISKLEGHSKRVTGLVFSDALNIL 901 (1092)
Q Consensus 867 ~v~iwd~~~~---------------------------------------------~~~~~l~~h~~~V~~l~~spdg~~l 901 (1092)
+|+||++.++ +++..+.+|.+.|++++||||| +|
T Consensus 511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l 589 (902)
T 2oaj_A 511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV 589 (902)
T ss_dssp CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence 9999999876 2467888999999999999999 99
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeecCC-CCcCCCCCceEEEEc-----cCC---CEEEE-EeCCcEEEEEc---CCce
Q 001363 902 VSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELT 968 (1092)
Q Consensus 902 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~s-----~dg---~~la~-~~d~~i~lwd~---~~~~ 968 (1092)
|+|+.|++|+|||+.++.......+.... +|.. .|++++|| ||| ++|++ +.|++|++||+ .+|+
T Consensus 590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred EEEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 99999999999999886543221223343 5554 89999999 886 78888 68899999999 7888
Q ss_pred eeeeeccCC-----CCCEEEEE-Ee----------------------cCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001363 969 CLKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 969 ~~~~~~~~h-----~~~v~~l~-fs----------------------~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
+...+ .+| .++|.+++ |+ ++|..|+++ +..|+||++.+++.......
T Consensus 667 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~-- 741 (902)
T 2oaj_A 667 FDVQL-MDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK-- 741 (902)
T ss_dssp EEEEE-EEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS--
T ss_pred EEEEe-cCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc--
Confidence 77663 344 47787777 76 455544443 77899999999988765531
Q ss_pred ccCCCCccccccceE-EE------ECCCCCCEEEEEeCCCcEEEEecCCCCCc
Q 001363 1021 YLRPTTSCLHVYPHA-IA------AHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1066 (1092)
Q Consensus 1021 ~~~~~~~~~~v~~~~-~~------~~p~d~~~l~~~~~dg~v~~w~~~~~~~~ 1066 (1092)
|...+..++ +. |++ ++..|++++.||+|++|++++.+..
T Consensus 742 ------~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~ 787 (902)
T 2oaj_A 742 ------YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQ 787 (902)
T ss_dssp ------SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEE
T ss_pred ------cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHH
Confidence 111122221 24 566 4789999999999999999887754
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.3e-48 Score=484.23 Aligned_cols=559 Identities=14% Similarity=0.175 Sum_probs=428.5
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
...+++.+|++.|++++|||+|+ +||+|+.||.|+|||+.+++.+.. +.+|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEE
Confidence 34578899999999999999998 689999999999999999987765 6689999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~ 483 (1092)
+|+|++||+++.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ .|++++.||.|++||+.++ .....+.+
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 9999999999999999999999987555 6788999999999999999 7999999999999999987 67788899
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEcc--CCCEEEEEecCCCCceeEEEE
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iw 560 (1092)
|...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+..++|+| ++.++++++. ++.|++|
T Consensus 139 ~~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~ 213 (814)
T 3mkq_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (814)
T ss_dssp CSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEE
T ss_pred CCCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEE
Confidence 9999999999652 56799999999999999998888777666554 7899999999 9999999875 6679999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE-EEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-LAV 639 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~ 639 (1092)
|..+++.+..+.+|. ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|++.. +++
T Consensus 214 d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA 288 (814)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEE
T ss_pred ECCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEE
Confidence 999999999998887 899999999999999999999999999999999999887664 46899999999873 244
Q ss_pred EeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccccc---------
Q 001363 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS--------- 710 (1092)
Q Consensus 640 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i--------- 710 (1092)
.+.++.+.+|+....... +.++ |+++.+++++.+...
T Consensus 289 ~~~~~~~~~~~~~~~~~~------------~~~~----------------------~~g~~~~~~~~~~~~~~~~~~~~~ 334 (814)
T 3mkq_A 289 SGFDNGFTVLSLGNDEPT------------LSLD----------------------PVGKLVWSGGKNAAASDIFTAVIR 334 (814)
T ss_dssp EEETTEEEEEECSCCSCC------------EEEC----------------------SSSEEEEECCTTSCTTCEEEEECC
T ss_pred EEeCCCEEEEEcCCCCce------------eEEC----------------------CCCCEEEECcccccceeeeeeecc
Confidence 445677889987655322 2232 445555544433321
Q ss_pred ceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCc
Q 001363 711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790 (1092)
Q Consensus 711 ~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 790 (1092)
..|++............. ..+...+.+++|+|+|+.+++++ +|.+.+|++....
T Consensus 335 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~----------------------- 388 (814)
T 3mkq_A 335 GNEEVEQDEPLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR----------------------- 388 (814)
T ss_dssp SCCCCCSSSCBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE-----------------------
T ss_pred cccccccCccceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc-----------------------
Confidence 012222111111111111 22556788999999999888887 8999999853211
Q ss_pred eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCC---CEEEEEeCCC
Q 001363 791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDDS 866 (1092)
Q Consensus 791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~---~~lasg~~dg 866 (1092)
. .+...+.+++|+||++++++++ ++.+++|+. +.+|...+.+++|+| ++ .+|++++.|+
T Consensus 389 -~-------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~ 451 (814)
T 3mkq_A 389 -N-------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFSGALLGVKSDG 451 (814)
T ss_dssp -E-------EEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEECSSSEEEEETT
T ss_pred -c-------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceecceEEEEecCC
Confidence 0 1345678999999999999997 699999963 345777889999999 77 5888899999
Q ss_pred cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE------eCCCcEEEEEcCC---------------Cceeeeee
Q 001363 867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCRS 925 (1092)
Q Consensus 867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~------s~Dg~I~iwd~~~---------------~~~~~~~~ 925 (1092)
.|++||+.+++.+..+.+|.. .++|+|||++|+++ +.++.+.+|--.. +.......
T Consensus 452 ~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (814)
T 3mkq_A 452 FVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDV 528 (814)
T ss_dssp EEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEE
T ss_pred EEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheee
Confidence 999999999999999998875 89999999999999 6666555554210 00000111
Q ss_pred eecCCCCcCCCCCceEEEEccCCCEEEEEe-CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEE
Q 001363 926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~v 1004 (1092)
+.... ..+.+..|. +..++... .+.+..+- .++... .......+..+.|.+++..++....++.+..
T Consensus 529 ~~~~~------~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 596 (814)
T 3mkq_A 529 LYELS------ESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVYG 596 (814)
T ss_dssp EEEEC------SCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEEE
T ss_pred eeEec------cEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEEE
Confidence 11111 135556664 34443332 34444432 222211 1123556777778899999999999999999
Q ss_pred EEcCCC
Q 001363 1005 HEASNL 1010 (1092)
Q Consensus 1005 wd~~~~ 1010 (1092)
|++...
T Consensus 597 ~~l~~~ 602 (814)
T 3mkq_A 597 YEISLE 602 (814)
T ss_dssp EECCHH
T ss_pred EEECcH
Confidence 998644
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.2e-46 Score=470.16 Aligned_cols=479 Identities=15% Similarity=0.183 Sum_probs=392.9
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|+|||++||+++.||.|+|||+.+++.+. .+.+|.++|.+++|+|+++ +|++++.||.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999986555 6779999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~ 549 (1092)
+.+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++. .....+..+...+.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999965 6689999999999999999987 45567788889999999999 8889999876
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
++.|++||+.++.....+..+. ...+..++|+| ++.++++++.||.|++||+.+++.+..+..+. ..|.+
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~ 233 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEE
Confidence 6679999999888877777654 47899999999 99999999999999999999999998888664 46899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc-eeecc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE-ISVEA 706 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~s~~~ 706 (1092)
++|+|+++++++++.||.|++|+..+++....+..+...+.+++++ |++..+ ++.+.
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----------------------~~~~~~~~~~~~ 291 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH----------------------PTGRKNYIASGF 291 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEEC----------------------TTCGGGEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEc----------------------cCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999997 455433 55666
Q ss_pred ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCee-EEEeecCCCcCcCcccccccCCccccC
Q 001363 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQP 785 (1092)
Q Consensus 707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i-~~w~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1092)
++.+.+|++... ...+.++|+|+.+++++.+... .++.... ...|+.
T Consensus 292 ~~~~~~~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 339 (814)
T 3mkq_A 292 DNGFTVLSLGND------------------EPTLSLDPVGKLVWSGGKNAAASDIFTAVI--------------RGNEEV 339 (814)
T ss_dssp TTEEEEEECSCC------------------SCCEEECSSSEEEEECCTTSCTTCEEEEEC--------------CSCCCC
T ss_pred CCCEEEEEcCCC------------------CceeEECCCCCEEEECcccccceeeeeeec--------------cccccc
Confidence 777888875421 2346789999988877665321 1111100 011333
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001363 786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 786 ~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
..+............+...+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|+| +++++|+++.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~~ 413 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDET 413 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECTT
T ss_pred ccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeCC
Confidence 3332221111111136677899999999999999999999999987654432 35678999999 89999999999
Q ss_pred CcEEEEEcCCceeeEeeccccCCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEE
Q 001363 866 STILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 942 (1092)
Q Consensus 866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l 942 (1092)
|.|++|+ .+.+|...+.+++|+||+ ++|++++.|+.|++||+.+++ .+.....+. ..+
T Consensus 414 g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~v 474 (814)
T 3mkq_A 414 GQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KDV 474 (814)
T ss_dssp CCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EEE
T ss_pred CcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CEE
Confidence 9999995 345688889999999998 689999999999999999865 333333332 389
Q ss_pred EEccCCCEEEEE------eCCcEEEEEc
Q 001363 943 QFHKDQTRFLLV------HETHLAIYEA 964 (1092)
Q Consensus 943 ~~s~dg~~la~~------~d~~i~lwd~ 964 (1092)
+|+|||++|+++ .++.+.++..
T Consensus 475 ~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 475 IWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 999999999997 6667776644
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-45 Score=421.77 Aligned_cols=288 Identities=22% Similarity=0.368 Sum_probs=267.3
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
..|.+|.+.|++++|+|+++ ++++|+.||+|+|||+.+++.... +.+|...|.+++|+|+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~ 161 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS 161 (410)
T ss_dssp CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred EeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCC
Confidence 45789999999999999998 799999999999999999987765 7789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.++.++..+.+|...
T Consensus 162 ~~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~ 236 (410)
T 1vyh_C 162 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236 (410)
T ss_dssp SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence 9999999999999999999886555 6789999999999999999 8999999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC--------------------CCEEEEE
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSC 547 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d--------------------g~~l~~~ 547 (1092)
|.++.++ +++.+|++++.||+|++||+.+......+..|...|.+++|+|+ |.+++++
T Consensus 237 v~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 237 VRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred EEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 9999985 47789999999999999999999998999999999999999996 6689998
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+. ++.|++||+.++..+..+.+|. ..|.+++|+|++++|++|+.||+|++||+.+++.+..+..|. ..|.+
T Consensus 315 s~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~--~~v~~ 385 (410)
T 1vyh_C 315 SR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTS 385 (410)
T ss_dssp ET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEE
T ss_pred eC----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEE
Confidence 86 6679999999999999999988 899999999999999999999999999999999999988664 46999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEC
Q 001363 628 ICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
++|+|++.+|++|+.||+|++|+.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999985
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1e-39 Score=363.29 Aligned_cols=296 Identities=19% Similarity=0.269 Sum_probs=266.6
Q ss_pred CcceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001363 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
+....++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~ 103 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTC 103 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEE
Confidence 3456789999999999999999998 799999999999999999987764 56799999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCc-ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001363 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 481 (1092)
+|+|+|++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+
T Consensus 104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEE
Confidence 9999999999999999999999987643 233446789999999999999875 889999999999999999999999
Q ss_pred ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001363 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
.+|...|.+++|++ ++.++++|+.||.|++||+++......+..|...|.+++|+|+++++++++. ++.|++||
T Consensus 181 ~~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd 254 (340)
T 1got_B 181 TGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFD 254 (340)
T ss_dssp CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEE
Confidence 99999999999965 6689999999999999999999999999999999999999999999999986 66799999
Q ss_pred CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001363 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
+.+++.+..+.... ....|.+++|+|+++++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+|.+|++++
T Consensus 255 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 255 LRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp TTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEE
T ss_pred CCCCcEEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEc
Confidence 99998877765322 23579999999999999999999999999999999999888664 4699999999999999999
Q ss_pred CCCeEEEEE
Q 001363 642 NENRIKILE 650 (1092)
Q Consensus 642 ~dg~i~iw~ 650 (1092)
.|+.|++||
T Consensus 332 ~D~~i~iWd 340 (340)
T 1got_B 332 WDSFLKIWN 340 (340)
T ss_dssp TTSCEEEEC
T ss_pred CCccEEecC
Confidence 999999996
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-39 Score=363.77 Aligned_cols=298 Identities=17% Similarity=0.243 Sum_probs=268.4
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
....++|.+|++.|++++|+||++ +||+|+.||+|+|||..+++.... +..|...|.+++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~ 113 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACA 113 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEE
Confidence 456789999999999999999998 699999999999999999887654 556889999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCc---ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
|+|+|++||+|+.|+.+++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++||+++++.+..
T Consensus 114 ~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~ 191 (354)
T 2pbi_B 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQS 191 (354)
T ss_dssp ECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEE
Confidence 999999999999999999999875421 223446778999999999999999 799999999999999999999999
Q ss_pred EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001363 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
+.+|...|.++++++.+++.+|++|+.||.|++||+++++....+..|...|.+++|+|+++++++++. ++.|++|
T Consensus 192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lw 267 (354)
T 2pbi_B 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLY 267 (354)
T ss_dssp EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEE
T ss_pred EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEE
Confidence 999999999999998878899999999999999999999999999999999999999999999999986 6679999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1092)
|+.+++.+..+..+. ....+.+++|+|++.++++|+.|++|++||+.+++.+..+..|. ..|.+++|+|+|++|+++
T Consensus 268 d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 268 DLRADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp ETTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSCEEEE
T ss_pred ECCCCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC--CcEEEEEECCCCCEEEEE
Confidence 999988877766433 23478999999999999999999999999999999988887654 569999999999999999
Q ss_pred eCCCeEEEEE
Q 001363 641 ANENRIKILE 650 (1092)
Q Consensus 641 ~~dg~i~iw~ 650 (1092)
+.|+.|++|+
T Consensus 345 s~D~~v~vW~ 354 (354)
T 2pbi_B 345 SWDHTLRVWA 354 (354)
T ss_dssp ETTSEEEEEC
T ss_pred cCCCCEEecC
Confidence 9999999995
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.5e-40 Score=360.64 Aligned_cols=294 Identities=15% Similarity=0.235 Sum_probs=265.5
Q ss_pred ceeeecccCCCCceEEeecCC----CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spd----g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~ 400 (1092)
.+...+.+|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++.... ..+.+|...|.
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~ 84 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVV 84 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEE
T ss_pred heeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEE
Confidence 445778899999999999985 44 799999999999999987654321 12779999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+++++....
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEE
Confidence 99999999999999999999999999986554 6778889999999999999 899999999999999999999999
Q ss_pred EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001363 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
+..|...|.+++|++ ++.+|++++.||.|++||+.+++....+..+..+|.+++|+|++++|++++. ++.|++|
T Consensus 160 ~~~~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iw 233 (321)
T 3ow8_A 160 LDTRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIY 233 (321)
T ss_dssp EECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEE
T ss_pred ecCCCceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 999999999999955 7789999999999999999999888899999999999999999999999976 6679999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1092)
|+.+++....+.+|. ..|.+++|+|++++|++++.|++|++||+.+++++..+..+. ..|.+++|+|++++|+++
T Consensus 234 d~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 234 DVQHANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp ETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEE
T ss_pred ECCCcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEE
Confidence 999999999999888 899999999999999999999999999999999999987654 469999999999999999
Q ss_pred eCCCeEEEEECC
Q 001363 641 ANENRIKILETP 652 (1092)
Q Consensus 641 ~~dg~i~iw~~~ 652 (1092)
+.||.|++||.+
T Consensus 309 ~~d~~i~vwd~p 320 (321)
T 3ow8_A 309 GDDQEIHIYDCP 320 (321)
T ss_dssp ETTCCEEEEECC
T ss_pred eCCCeEEEEeCC
Confidence 999999999964
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.8e-39 Score=352.33 Aligned_cols=293 Identities=18% Similarity=0.309 Sum_probs=257.6
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
...++|.+|++.|++++|+|||+ +|++|+.||+|+|||+.++..+.. +.+|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 45678999999999999999998 689999999999999999887764 6679999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~ 483 (1092)
+|++++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++||++++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999987655 6889999999999999999 8999999999999999987 45577899
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEcc--CCCEEEEEecCCCCceeEEEE
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iw 560 (1092)
|...|.+++|+|. ++.+|++|+.||+|++||+........+. .+...+..+.|+| ++.+|++++. ++.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999764 45799999999999999998877666554 4556888899986 7789999986 6779999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC--EEE
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 638 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~ 638 (1092)
|+.+++++..+.+|. ..|.+++|+|++++|++|+.||+|++||..+++.+..+..+. ..+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEE
T ss_pred eCCCCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEE
Confidence 999999999999988 899999999999999999999999999999999999987653 4688999999875 577
Q ss_pred EEeCCCeEEEEECCC
Q 001363 639 VIANENRIKILETPE 653 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~ 653 (1092)
+|+.| .+.+|++..
T Consensus 289 sg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEETT-EEEEEECC-
T ss_pred EecCC-ceEEEEecc
Confidence 77665 567777654
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.5e-39 Score=352.53 Aligned_cols=301 Identities=19% Similarity=0.239 Sum_probs=259.4
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+..+|.||++.|++++|+|++..+|++|+.|++|++||+.+....... ....+.+|...|.+++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~ 73 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTL 73 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEE
Confidence 3557899999999999999977448999999999999998754332111 11237799999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
+|||++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||+. ++++..+.+|
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h 147 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGH 147 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEecc
Confidence 9999999999999999999999987554 6789999999999999999 89999999999999975 6678889999
Q ss_pred CcCeEEEeecccC----CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001363 485 GAPVYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1092)
Q Consensus 485 ~~~v~~i~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw 560 (1092)
...|.++.+.+.. ++.++++++.|+.|++||++..+....+..|...|.+++|+|+|++|++++. ++.|++|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iw 223 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLW 223 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence 9999999997643 4568999999999999999998888889999999999999999999999986 6789999
Q ss_pred eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC------CCCCCceEEEccCC
Q 001363 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNG 634 (1092)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~ 634 (1092)
|+.+++.+..+..+ ..|.+++|+|++.++++++.+ .+++|++..+..+..+..+. +...+.+++|+|+|
T Consensus 224 d~~~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 298 (319)
T 3frx_A 224 NLAAKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298 (319)
T ss_dssp ETTTTEEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred ECCCCcEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence 99999999888764 479999999999998888765 59999999888777765331 22457799999999
Q ss_pred CEEEEEeCCCeEEEEECCCC
Q 001363 635 TLLAVIANENRIKILETPES 654 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++|++++.||.|++|++.++
T Consensus 299 ~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 299 QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEeecCceEEEEEEeec
Confidence 99999999999999998653
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.1e-39 Score=366.74 Aligned_cols=306 Identities=17% Similarity=0.256 Sum_probs=265.6
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
..+.++|.||++.|++++|+|+|+ +|++|+.|++|+|||+.+++.... +.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 456789999999999999999998 699999999999999999887764 667999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCc----ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999975421 1222357799999999999998654 69999999999999999999998
Q ss_pred EE-----ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001363 480 SF-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 480 ~~-----~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
.+ .+|...|.++++++. ++.+|++|+.||+|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 87 679999999998653 567999999999999999984 4667788899999999999999999999986
Q ss_pred ceeEEEEeCCCCeEEEEEeecccc----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC--CCCCCCCce
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPR 627 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 627 (1092)
++.|++||+.+++.+..+..+... ...|.+++|+|+++++++|+.||.|++||..+++.+..+.. .++...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 667999999999998888765411 13488999999999999999999999999999998877732 234567999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
++|+|+|++|++|+.|+.|++|++...+
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999999987653
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-38 Score=362.01 Aligned_cols=286 Identities=18% Similarity=0.287 Sum_probs=267.0
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|..+|++++|+|++++|++|+.|++|+|||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 66899999999999999999999999999999999987665 7889999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.+++++..+.+|...|.+++|++ ++.+|++|+.|++|++||+.++.....+..|...+.++.++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 999999999999999999999966 5679999999999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC--------------------CCEEEEEeCCCcEEEEECCCCc
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
++.|++||+.+++....+.+|. ..|.+++|+|+ +.++++|+.|++|++||+.++.
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 5679999999999999998887 89999999996 6789999999999999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeec
Q 001363 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1092)
++..+..|. ..|.+++|+|++++|++++.||.|++||..+++.+..+.+|...|.+++|+
T Consensus 330 ~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------ 389 (410)
T 1vyh_C 330 CLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------ 389 (410)
T ss_dssp EEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred eEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence 999988664 468999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCccceeeccccccceecc
Q 001363 692 EDPKEDVKPEISVEAENKSEVEKP 715 (1092)
Q Consensus 692 ~~~s~d~~~l~s~~~d~~i~lw~~ 715 (1092)
|++.++++++.|++|++|+.
T Consensus 390 ----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 ----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----SSSSCEEEEETTSEEEEEC-
T ss_pred ----CCCCEEEEEeCCCcEEEEeC
Confidence 67889999999999999985
No 21
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.6e-39 Score=360.59 Aligned_cols=320 Identities=16% Similarity=0.205 Sum_probs=231.1
Q ss_pred ceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCC
Q 001363 701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 780 (1092)
Q Consensus 701 l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 780 (1092)
++.++.+.....|++....+ ..|...|.+++|+|||++|++++.|. +++||- .+
T Consensus 19 ~~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~---------------~v 72 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG---------------SI 72 (357)
T ss_dssp -------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------EE
T ss_pred EEecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------eE
Confidence 34455567778888653322 24888999999999999999998743 233431 23
Q ss_pred ccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeE----EecCCCCCeEEEEEcCCCC
Q 001363 781 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDN 856 (1092)
Q Consensus 781 ~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~ 856 (1092)
++|+..++...........+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|+| ++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg 151 (357)
T 4g56_B 73 WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DG 151 (357)
T ss_dssp EEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SS
T ss_pred EEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CC
Confidence 334444433222221222248889999999999988877778999999999877543 3457899999999999 89
Q ss_pred CEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001363 857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 935 (1092)
++|++|+.||.|++||+.+++++..+.+|...|++++|+|++. ++++++.|++|++||+.+++.... + ....+.
T Consensus 152 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--~-~~~~~~-- 226 (357)
T 4g56_B 152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--I-DFCASD-- 226 (357)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB--C-CCTTCC--
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee--e-eecccc--
Confidence 9999999999999999999999999999999999999999875 789999999999999988653321 1 111222
Q ss_pred CCCceEEEEccCC-CEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCce
Q 001363 936 APSETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 936 ~~~v~~l~~s~dg-~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
..+.+++|+|++ .+|++ +.|+.|++||+.+++++.. +.+|...|++++|+|++ ++|++|+.||+|+|||+.+++.
T Consensus 227 -~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 227 -TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp -SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred -ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 368999999985 56777 5789999999999998877 56899999999999997 5799999999999999999987
Q ss_pred EEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001363 1013 QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
+..+. |...|. +++|+|.|+.+|++++.||+|++|+++..+.
T Consensus 305 ~~~~~---------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 305 FRDLS---------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEECC---------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred eEECC---------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 75432 455565 7889997789999999999999999976654
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.6e-38 Score=347.32 Aligned_cols=286 Identities=14% Similarity=0.182 Sum_probs=263.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|+||+++|++|+.|++|++||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999886554 6778999999999999999 899999999999999
Q ss_pred CCCC----ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 472 ~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
+.++ +....+.+|...|.++.|.+. + .+++++.||+|++||+.++.....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9876 355778899999999999653 3 59999999999999999999888999999999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+. ++.|++||+.++..+..+.+|. ..|.+++|+|+++++++|+.||+|++||+.+++.+..+..+.....|.+
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 86 6679999999999999999888 8999999999999999999999999999999998888775555456899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++|+|+|+++++|+.|+.|++||..++..+..+.+|...|.+++++ |++.++++++.|
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~D 333 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD 333 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999996 789999999999
Q ss_pred cccceec
Q 001363 708 NKSEVEK 714 (1092)
Q Consensus 708 ~~i~lw~ 714 (1092)
++|++|+
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-38 Score=349.90 Aligned_cols=306 Identities=15% Similarity=0.240 Sum_probs=250.5
Q ss_pred ceeeecccCCC-CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 325 TVAQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~-~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.++.+|.+|.+ .|++++|+|||+ +||+|+.|++|+|||+.++..... .....+|...|.+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVA 68 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEE
Confidence 56788999988 999999999998 699999999999999988754321 112468999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc---eeEE
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYS 480 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~---~~~~ 480 (1092)
|+|+|++||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++. ++..
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 999999999999999999999987642 23347889999999999999999 89999999999999998763 4667
Q ss_pred EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
+.+|...|.+++|+| ++.+|++++.|++|++||...... ...+..|...|.+++|+|+|++|++++. ++.|+
T Consensus 146 ~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~ 219 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVR 219 (345)
T ss_dssp ECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEE
T ss_pred ecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEE
Confidence 889999999999965 567999999999999999987653 4577889999999999999999999986 66799
Q ss_pred EEeCCCC---------------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-------EEEE
Q 001363 559 EWNESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL-------LTTI 616 (1092)
Q Consensus 559 iwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~-------~~~~ 616 (1092)
+||.... .++..+.+. |...|.+++|+|++..+++++.|+.|++|+...+.. ....
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred EeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence 9986321 233444442 247899999999999999999999999999875421 1111
Q ss_pred eCCCCCCCCceEEEccCC-CEEEEEeCCCeEEEEECCCCceee
Q 001363 617 DAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1092)
Q Consensus 617 ~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1092)
...++...|.+++|+|++ .+|++++.||+|++|+..+++...
T Consensus 298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 122445679999999987 599999999999999998876543
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.3e-38 Score=343.83 Aligned_cols=288 Identities=16% Similarity=0.246 Sum_probs=263.4
Q ss_pred ecCCCCcEEEEEECCC----CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 392 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
+.+|.+.|.+++|+|+ +++|++|+.|++|+||++.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5689999999999985 67999999999999999987643 22336889999999999999999 89999999999
Q ss_pred EEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
++||+.+++.+..+..|...+.+++|+| ++.+|++++.||.|++|++++......+..+...+.+++|+|+|++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999999999999999999999999955 67899999999999999999999988888888999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
+. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.|++|++||+.+++....+..|. ..|.+
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~ 253 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA--SWVLN 253 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS--SCEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC--CceEE
Confidence 86 5669999999999999999887 899999999999999999999999999999999998887664 46899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+ |+++.+++++.|
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s----------------------~~g~~l~s~~~d 311 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN----------------------GNGSKIVSVGDD 311 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC----------------------CCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999996 788899999999
Q ss_pred cccceecc
Q 001363 708 NKSEVEKP 715 (1092)
Q Consensus 708 ~~i~lw~~ 715 (1092)
++|++||.
T Consensus 312 ~~i~vwd~ 319 (321)
T 3ow8_A 312 QEIHIYDC 319 (321)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEeC
Confidence 99999995
No 25
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.3e-37 Score=338.24 Aligned_cols=295 Identities=18% Similarity=0.310 Sum_probs=261.3
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
....++.+|.+.|++++|+|+|+ +|++|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 45678899999999999999998 689999999999999999887654 6789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
+|++++|++++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++||+.+++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987554 6789999999999999999 8999999999999999999999999999
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
..+|.+++|++ ++.+|++++.||.|++||+.+.+....+. .+...+..++|+|+++++++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 99999999965 66899999999999999999888766554 45567999999999999999986 6679999999
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe--
Q 001363 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-- 641 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-- 641 (1092)
+++.+..+.+|......+......+++.++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEcc
Confidence 999999998877332334444445778899999999999999999999999988664 4689999999999999997
Q ss_pred CCCeEEEEECC
Q 001363 642 NENRIKILETP 652 (1092)
Q Consensus 642 ~dg~i~iw~~~ 652 (1092)
.|+.|++|+..
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.9e-38 Score=352.25 Aligned_cols=295 Identities=13% Similarity=0.154 Sum_probs=239.0
Q ss_pred cccCCCCceEEeecCCCceEEEEEcC------CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 330 LIEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
..+|+..|++++|||||+ +||+|+. |++|++|+..++........ ...+|...|.+++
T Consensus 38 p~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~ 101 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVA 101 (357)
T ss_dssp --CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEE
T ss_pred cccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEE
Confidence 357999999999999998 6889887 67899998887764432111 1446899999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccc-eEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
|+|++++| +++.||+|+|||+.+++.... .....+|...|.+++|+|+++ +|++|+.|++|++||+.+++.+..+.
T Consensus 102 ~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~ 178 (357)
T 4g56_B 102 WVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYN 178 (357)
T ss_dssp EETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 99998655 577899999999998865432 224568999999999999999 89999999999999999999999999
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCC-CEEEEEecCCCCceeEEE
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANG-RRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~i 559 (1092)
+|...|++++|++..+ .++++++.||+|++||+++.+....+. .+...+.+++|+|++ .++++++. ++.|++
T Consensus 179 ~h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~ 253 (357)
T 4g56_B 179 AHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSL 253 (357)
T ss_dssp CCSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEE
T ss_pred CCCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeE
Confidence 9999999999976533 478999999999999999887765443 455679999999985 56777765 566999
Q ss_pred EeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEE
Q 001363 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLL 637 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l 637 (1092)
||+.+++.+..+.+|. ..|.+++|+|++ ++|++|+.|++|+|||+++++.+..+. +...|.+++|+| ++.+|
T Consensus 254 wd~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~---H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 254 VNIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS---HRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp EESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC---CSSCEEEEEECSSSTTEE
T ss_pred EECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC---CCCCEEEEEEeCCCCCEE
Confidence 9999999999999888 899999999987 578899999999999999998877653 345699999998 89999
Q ss_pred EEEeCCCeEEEEECCCC
Q 001363 638 AVIANENRIKILETPES 654 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~~~ 654 (1092)
++++.||+|++|++...
T Consensus 328 ~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEEECC--
T ss_pred EEEcCCCeEEEEECCCC
Confidence 99999999999999764
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=344.24 Aligned_cols=299 Identities=14% Similarity=0.116 Sum_probs=239.4
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeeccccc-ceeeEeeecCCCCcEEEEEECCCCC
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS-MLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~-~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
..|...|.+++|||||+ +|++++ |+++++||... .+|+..... ..-.......|...|.+++|+||+
T Consensus 27 ~~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~- 94 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER- 94 (344)
T ss_dssp SSCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-
T ss_pred ccccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-
Confidence 35667899999999998 677776 77888887321 112110000 000001122367789999999985
Q ss_pred EEEEEeCCCEEEEEEccCCCcccce-EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 488 (1092)
+|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|||+ +|++|+.|++|++||+.+++++..+.+|...|
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 6889999999999999998876532 24568999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCC
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.+++|++.. ..+|++++.||+|++||+++.+....+. .+...+.+++|+|++ +++++++. ++.|++||++++
T Consensus 173 ~~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~ 247 (344)
T 4gqb_B 173 TCVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKST 247 (344)
T ss_dssp EEEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC-
T ss_pred EEEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCC
Confidence 999997653 2588999999999999999988877664 345578999999954 56777765 677999999999
Q ss_pred eEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANE 643 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~d 643 (1092)
+.+..+.+|. ..|.+++|+|++ ++|++|+.|++|++||+.++++.. +.. +...|.+++|+|+++ +|++++.|
T Consensus 248 ~~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~--H~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 248 SCVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQA--HRDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp -CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECC--CSSCEEEEEECSSSTTEEEEEETT
T ss_pred cEEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcC--CCCCEEEEEEeCCCCeEEEEEcCC
Confidence 9999999988 899999999998 578899999999999999987654 443 445799999999886 67789999
Q ss_pred CeEEEEECCCC
Q 001363 644 NRIKILETPES 654 (1092)
Q Consensus 644 g~i~iw~~~~~ 654 (1092)
++|++|++.+.
T Consensus 322 ~~v~~w~v~~~ 332 (344)
T 4gqb_B 322 HQVVHHVVPTE 332 (344)
T ss_dssp SCEEEEECCC-
T ss_pred CeEEEEECCCC
Confidence 99999999865
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.4e-38 Score=347.05 Aligned_cols=296 Identities=13% Similarity=0.158 Sum_probs=227.6
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
+...|.+++|+|||+.+++++ |+.+++|+.... +|+................+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 566799999999999777665 778888874211 1111000000000000002567899999999
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeeEE----ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCC
Q 001363 813 NDAYLFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 888 (1092)
Q Consensus 813 dg~~l~~~sdg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 888 (1092)
++.+++.+.||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 97655444489999999998876544 448999999999999 8999999999999999999999999999999999
Q ss_pred eEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC-CCEEEE-EeCCcEEEEEcC
Q 001363 889 VTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAE 965 (1092)
Q Consensus 889 V~~l~~spdg-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~-~~d~~i~lwd~~ 965 (1092)
|++++|+|++ .+|++++.|++|++||+.+++.... +.. ..+. ..+.+++|+|+ +.+|++ +.|++|++||+.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 9999999998 4789999999999999998763331 111 1111 25889999995 567777 578999999999
Q ss_pred CceeeeeeccCCCCCEEEEEEecCC-CEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCC
Q 001363 966 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus 966 ~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1044 (1092)
+++++.. +.+|...|++++|+||| ++|++|+.|++|+|||+.++++.. +. .|...|. +++|+|++..
T Consensus 246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--------~H~~~V~--~v~~sp~~~~ 313 (344)
T 4gqb_B 246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--------AHRDFVR--DATWSPLNHS 313 (344)
T ss_dssp C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--------CCSSCEE--EEEECSSSTT
T ss_pred CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--------CCCCCEE--EEEEeCCCCe
Confidence 9999887 56899999999999998 589999999999999999987653 22 2556665 7889996666
Q ss_pred EEEEEeCCCcEEEEecCCC
Q 001363 1045 QFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1045 ~l~~~~~dg~v~~w~~~~~ 1063 (1092)
+|++++.||+|++|+++..
T Consensus 314 llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEEETTSCEEEEECCC-
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 7889999999999999654
No 29
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-37 Score=355.01 Aligned_cols=334 Identities=13% Similarity=0.180 Sum_probs=281.8
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEec----CCCCe------eEEeeeeeeecccccceee-EeeecCCCCcEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQK------LFIRNFKVWDIGACSMLFK-TALVRDPGVSVN 400 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~----~~~~~------~~~~~~~~~d~~~~~~~~~-~~~l~~h~~~V~ 400 (1092)
.|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++. ...... ++. .....+|...|.
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~ 112 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH----------PFALSASSGKTTNQVT 112 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC----------CCCCC------CBCEE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc----------cccccccccCCCCceE
Confidence 456899999999999845899999999999999 88873 221100 000 001223788999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+++|+|++++|++++.|+.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..
T Consensus 113 ~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEE
Confidence 999999999999999999999999 4444333 6789999999999999999 899999999999999999999999
Q ss_pred EecCCcC---------------eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001363 481 FEGHGAP---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 481 ~~~~~~~---------------v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
+..+... +.+++|++. ..+++++.||.|++||+........+..+...+.+++|+|++++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp ECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 9888877 888888653 4699999999999999999988888889999999999999999999
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCC
Q 001363 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
+++. ++.|++||..+++.+..+.+|. ..+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+. ..+
T Consensus 264 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i 333 (425)
T 1r5m_A 264 SASD----DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VPI 333 (425)
T ss_dssp EEET----TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CCE
T ss_pred EEcC----CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--ccE
Confidence 9986 5669999999999998888877 899999999999 99999999999999999999998888654 468
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCc--------------------eeeecccccC--ceeeeeecCCCccccccc
Q 001363 626 PRICFNKNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGI 683 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~--------------------~~~~~~~~~~--~v~~~~~~~~~~~~~~~~ 683 (1092)
.+++|+|++++|++++.||.|++|++.++. .+..+..|.. .|.+++|+
T Consensus 334 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---------- 403 (425)
T 1r5m_A 334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN---------- 403 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC----------
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc----------
Confidence 999999999999999999999999999877 7788888866 88888886
Q ss_pred cCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
|+++++++++.|+.+++|++.
T Consensus 404 ------------~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 ------------CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ------------TTSSEEEEEESSSCCEEEECC
T ss_pred ------------CCCceEEEEecCceEEEEeec
Confidence 788899999999999999964
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-36 Score=339.12 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=261.2
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|...|.+++|+||+++||+|+.|++|++||..+++... .+..|...|.+++|+|+|. .+++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 77899999999999999999999999999999998876544 5678899999999999999 899999999999999
Q ss_pred CCCC------ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc--CCCE
Q 001363 472 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR 543 (1092)
Q Consensus 472 ~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--dg~~ 543 (1092)
+... .....+.+|...|.+++|++ ++..|++++.||+|++||+++++....+..|...|.+++++| +|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8654 34577889999999999965 567999999999999999999999999999999999999987 5789
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
+++++. ++.|++||+.+++.+..+.+|. ..|.+++|+|+++++++++.|++|++||+.+++.+..+..+....
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 999986 5679999999999999998888 899999999999999999999999999999998887776655445
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
.+.+++|+|+++++++++.|+.|++||+.++..+..+.+|...|.+++|+ ||++++++
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s 343 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS 343 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence 67899999999999999999999999999999999999999999999996 78999999
Q ss_pred eccccccceec
Q 001363 704 VEAENKSEVEK 714 (1092)
Q Consensus 704 ~~~d~~i~lw~ 714 (1092)
++.|+++++|+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999995
No 31
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=336.79 Aligned_cols=296 Identities=17% Similarity=0.195 Sum_probs=234.8
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeee-cC-CCCcEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RD-PGVSVNRV 402 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l-~~-h~~~V~~l 402 (1092)
.++++|.+|++.|++++|+|+ +||+|+.|++|+|||+.++...... .+ .+ |...|.++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~-----------------~~~~~~h~~~v~~v 64 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLID-----------------VLDETAHKKAIRSV 64 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEE-----------------EECTTCCCSCEEEE
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEE-----------------EEecCCccCCEEEE
Confidence 467889999999999999997 6899999999999999876422110 13 34 99999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCC----cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC----
Q 001363 403 VWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---- 474 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---- 474 (1092)
+|+|++++||+|+.|++|+|||+..+. .......+.+|...|.+++|+|+++ +|++|+.|++|++||+..
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCC
Confidence 999999999999999999999996432 1233446789999999999999999 899999999999999943
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEccC--CCEEEEEecC
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTS 550 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~~ 550 (1092)
.+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +.+|++++.
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~- 219 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD- 219 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred eEEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence 256788899999999999966 5689999999999999998765 456678889999999999998 678999886
Q ss_pred CCCceeEEEEeCCCC--------eEEEEEee-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEeCC
Q 001363 551 KEGESFLVEWNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAG 619 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~--------~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~ 619 (1092)
++.|++||+.++ .....+.+ |. ..|.+++|++++ .+++++.||.|++|+..+++. .... ..
T Consensus 220 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~ 291 (330)
T 2hes_X 220 ---DSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-AL 291 (330)
T ss_dssp ---TSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SC
T ss_pred ---CCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cc
Confidence 667999998765 33444443 44 889999999765 899999999999999988743 3222 12
Q ss_pred CCCC-CCceEEEcc--CCCEEEEEeCCCeEEEEECCC
Q 001363 620 GGLP-ENPRICFNK--NGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 620 ~~~~-~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
.+.. .|.+++|+| ++++|++++.||.|++|++..
T Consensus 292 ~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 292 CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2333 689999999 789999999999999999864
No 32
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.7e-37 Score=340.22 Aligned_cols=302 Identities=17% Similarity=0.271 Sum_probs=244.8
Q ss_pred cceeeecccCCCCceEEee-----cC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001363 324 KTVAQTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~-----sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
..+..+|.||++.|++++| +| |++ +|++|+.|++|+|||+.+++.... .......+.+|..
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~ 77 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNH 77 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSS
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCC
Confidence 3466889999999999999 77 887 799999999999999986543210 0011123789999
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001363 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
.|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.. ..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~ 151 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-EC 151 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cc
Confidence 99999999999999999999999999999987554 6789999999999999999 899999999999999874 44
Q ss_pred eEEEe---cCCcCeEEEeecccCC--------ccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001363 478 TYSFE---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 478 ~~~~~---~~~~~v~~i~~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
..... +|...|.+++|++... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE
Confidence 43443 7889999999976532 268999999999999994 44556677889999999999999999999
Q ss_pred EecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--EEeCC----
Q 001363 547 CGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG---- 619 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~---- 619 (1092)
++. ++.|++||+.+ ......+. +. ..|.+++|+|++.++++ +.|+.|++||+.+++... .+...
T Consensus 231 gs~----dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 231 GGK----DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp EET----TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred EcC----CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchh
Confidence 986 67799999944 33433332 23 57999999999887664 457889999998876543 33311
Q ss_pred -----CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 620 -----GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 620 -----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 34456889999999999999999999999997653
No 33
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.6e-35 Score=379.80 Aligned_cols=523 Identities=13% Similarity=0.065 Sum_probs=378.1
Q ss_pred CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001363 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
+...+.+++|||+ + ||.++. +.|++|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 3558899999964 3 454444 789999999887543 667999999999999999999
Q ss_pred EEeCC------CEEEEEEccCCCcccceEEEcccccce-------eEEEEecCCCcEEEEEEeCC------CcEEEEECC
Q 001363 413 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV 473 (1092)
Q Consensus 413 s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~ 473 (1092)
+++.+ ..|++|++.+++. ..+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 4799999988752 2577888888 9999999998 67777754 458888887
Q ss_pred CCceeEEEecCCcCeEEEeecccCCccEEEEEec------------CCeEEEEEcCCCCceEEecCCCCceEEEEEccCC
Q 001363 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg 541 (1092)
+++... +..+ ....++|++ | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~~-l~~~--~~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFVP-LNLG--PATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEEE-CCSC--SCSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeEE-ecCC--CcceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 776543 3333 234556754 5 7888753 345677765444555566788889999999988
Q ss_pred CEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 001363 542 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1092)
..++++.. ++.+.+|.... +.....+..+. .+...+|+|+|++++.+. ++.|++|++.... +..+..+.
T Consensus 215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~ 284 (1045)
T 1k32_A 215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGD 284 (1045)
T ss_dssp EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCC
T ss_pred EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCc
Confidence 44444432 33355555432 33334444443 355679999999988874 8999999995444 33444321
Q ss_pred ---------CCCCCceEEEc-cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceee
Q 001363 621 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1092)
Q Consensus 621 ---------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 690 (1092)
+...+..++|+ |||+++++++ ++.+.+|+...+.... +.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~----------------------------- 333 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP----------------------------- 333 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence 11247899999 9999999888 7889999877553221 10
Q ss_pred cCCCCCCCccceeeccccccceeccccccCccccccccCCccccc-cEEEEEEecCCcEEEEeecCCeeE-EEeecCCCc
Q 001363 691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDL 768 (1092)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~dg~i~-~w~~~~~~~ 768 (1092)
.+.. .+..++|+ ||+.++.++.++.+. +|++..
T Consensus 334 -----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~--- 368 (1045)
T 1k32_A 334 -----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT--- 368 (1045)
T ss_dssp -----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT---
T ss_pred -----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC---
Confidence 0233 57788899 999888888776666 666432
Q ss_pred CcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeE
Q 001363 769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT 847 (1092)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~ 847 (1092)
+. ... +. ++...+..++|||||++|++++ ++.|++||+.+++....+..|...+.
T Consensus 369 -------------------~~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 369 -------------------GK-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp -------------------CC-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred -------------------CC-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 22 111 11 2667899999999999999988 58999999999998888878888999
Q ss_pred EEEEcCCCCCEEEEEeCCC----------cEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 848 SLAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 848 ~l~~s~~d~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
+++||| |+++|++++.++ .|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+...
T Consensus 425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 999999 899998887654 99999999887 677888988999999999999999999988888887543
Q ss_pred Cceeee-----eeeec-----------------------CCCC-------cCCCCCceEEEEccCCCEEEE---------
Q 001363 918 WGIQTC-----RSLQT-----------------------PDGV-------MTLAPSETHIQFHKDQTRFLL--------- 953 (1092)
Q Consensus 918 ~~~~~~-----~~~~~-----------------------~~~~-------~~~~~~v~~l~~s~dg~~la~--------- 953 (1092)
...... ..+.. ..+. ....+.+..++|+|||+++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~ 582 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 582 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence 321000 00000 0000 011235789999999997775
Q ss_pred ---E--eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001363 954 ---V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 954 ---~--~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
+ ....|.+||+.+++.... . ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 583 ~~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 583 YYQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 234688999988875432 2 568899999999999999866 89999998887
No 34
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-36 Score=330.68 Aligned_cols=268 Identities=19% Similarity=0.254 Sum_probs=241.7
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|+|||++|++++.||+|++||+.++..+. .+..|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 77899999999999999999999999999999999986554 6788999999999999999 899999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~-dg~~l~~~~~ 549 (1092)
+.+++.+..+.+|...|.+++|+| ++.+|++|+.||+|++||+++... ...+..|...|.+++|+| ++..+++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 999999999999999999999965 568999999999999999988744 456788999999999999 6789999986
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCce
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1092)
++.|++||+.++.....+..+. ...+..+.|+| ++.++++|+.|++|++||+.+++++..+..|. ..|.+
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~ 233 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred ----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEE
Confidence 6779999998887766665433 36788999986 67899999999999999999999999998764 46899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecC
Q 001363 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNP 674 (1092)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 674 (1092)
++|+|++++|++++.||+|++||..+++....+..+...+.++++.|
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 99999999999999999999999999999999999999999999874
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-36 Score=343.41 Aligned_cols=303 Identities=15% Similarity=0.231 Sum_probs=247.5
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
+|.+.|++++|||||+ +||+|+ +++++||++.+++.+.......-.. .....+.......+...|.+++|+|||++|
T Consensus 62 ~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEECCCCCEE
Confidence 6999999999999999 688876 6899999999998776422100000 000001111112344569999999999999
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
|+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ .|++++.|++|++||+.++++...+. +...+.++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 999999999999999886544 6889999999999999999 89999999999999999999888876 56779999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
++++. ++.+|++++.||.|++||++++.....+ ..|...|.+++|+|+|++|++++. ++.|++||+.+
T Consensus 213 ~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQN 287 (393)
T ss_dssp EECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC--
T ss_pred EEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCC
Confidence 98753 6689999999999999999988766655 467789999999999999999986 67799999875
Q ss_pred C------------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 565 G------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 565 ~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
. .+...+.+|. ..|.+++|+|++.++++|+.|+.|++||..+++.+..+..|. ..|.+++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~v~~~~ 362 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISVAVAN 362 (393)
T ss_dssp -------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS
T ss_pred CCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEEEEecC
Confidence 3 3455667776 889999999999999999999999999999999999888664 4689999886
Q ss_pred ------CCCEEEEEeCCCeEEEEECCC
Q 001363 633 ------NGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 633 ------~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
++++|++++.||+|++|+...
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999764
No 36
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.4e-37 Score=348.60 Aligned_cols=290 Identities=15% Similarity=0.167 Sum_probs=256.0
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.+++|+|+|++|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+|+ +|++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 77999999999999999999999999999999999886544 6789999999999999999 899999999999999
Q ss_pred CCCCc-------eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-----cCCCCceEEEEEcc
Q 001363 472 AVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA 539 (1092)
Q Consensus 472 ~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~~~~s~ 539 (1092)
+.+.. ....+.+|.+.|.++.|.+.. +..|++|+.|++|++||+.++.....+ ..|...+.++++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 345678999999999997653 357999999999999999998887766 56777899999987
Q ss_pred -CCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001363 540 -NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 540 -dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
+++++++++. ++.|++||++ .+..+..+.+|. ..|.+++|+|+++++++|+.||+|++||+.+++.+..+.
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 8899999986 6679999997 557788888888 899999999999999999999999999999999988876
Q ss_pred CCCC-----CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeec----ccccCceeeeeecCCCccccccccCCce
Q 001363 618 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1092)
Q Consensus 618 ~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 688 (1092)
.+.. ...+.+++|+|+|+++++|+.||.|++||...++.+..+ .+|...|.+++++
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s--------------- 353 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS--------------- 353 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC---------------
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC---------------
Confidence 5422 234889999999999999999999999999988877665 6788999999996
Q ss_pred eecCCCCCCCccceeeccccccceeccc
Q 001363 689 SVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
|||+++++++.|+++++|++.
T Consensus 354 -------~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 354 -------SDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp -------SSSSEEEEECTTSCEEEEECC
T ss_pred -------CCCCEEEEeeCCCCEEEEecC
Confidence 789999999999999999976
No 37
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=335.41 Aligned_cols=301 Identities=17% Similarity=0.204 Sum_probs=240.0
Q ss_pred cccc-cEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001363 732 VKAN-KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 810 (1092)
Q Consensus 732 ~~~~-~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~ 810 (1092)
+|.. .|..++|+|+|++|++++.|+.|++|++..... .....+ ..+|...|.+++|
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~-~~~h~~~v~~~~~ 69 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVL-SEGHQRTVRKVAW 69 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEE-CSSCSSCEEEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeee-ccccCCcEEEEEE
Confidence 3666 899999999999999999999999999764311 100001 1248999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEcCCc--eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc---eeeEeecc
Q 001363 811 SKNDAYLFSAS-GGVISLYIVMTF--KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEG 884 (1092)
Q Consensus 811 s~dg~~l~~~s-dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~ 884 (1092)
+|++++|++++ |+.+++||..++ +.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.++ +++..+.+
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence 99999999998 799999998866 46788999999999999999 8999999999999999999876 45677889
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEE
Q 001363 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 963 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd 963 (1092)
|...|.+++|+|++++|++++.|++|++||+..++. .+.....+|.. .|.+++|+|+|++|++ +.|++|++||
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 999999999999999999999999999999987542 23344556654 7999999999999999 6889999999
Q ss_pred cCCc---------------eeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEE--eeccccccCCCC
Q 001363 964 AEEL---------------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC--RILSTAYLRPTT 1026 (1092)
Q Consensus 964 ~~~~---------------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~--~~~~~~~~~~~~ 1026 (1092)
.... +++..+...|...|.+++|+|++..|++++.|+.|++|+...+.... .+...... ...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-~~~ 301 (345)
T 3fm0_A 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL-HQA 301 (345)
T ss_dssp EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE-TTS
T ss_pred cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee-ccc
Confidence 7321 23344344489999999999999999999999999999987653210 01000011 112
Q ss_pred ccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001363 1027 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus 1027 ~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
|...|. +++|+|+++.+||+|+.||+|++|++...+.
T Consensus 302 h~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 302 HSQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SSSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred ccCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 455555 7899996557999999999999999976663
No 38
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.1e-36 Score=333.87 Aligned_cols=303 Identities=18% Similarity=0.261 Sum_probs=260.2
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
.+..+|+||++.|++|+|+|++..+||||+.|++|+|||+.+++..... ....+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEE
Confidence 4557899999999999999985348999999999999999887644221 12237899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-EEEec
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEG 483 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~ 483 (1092)
+|||++|++++.|+.|++|+...+.... ....+...+..+.+++++. .+++++.|+.+++||....... ....+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999998875443 5567888899999999999 7999999999999998766543 44567
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
|...+..++|.+.+...++++++.|+.|++||+.+.+....+..|...|.+++|+|++++|++++. ++.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence 999999999988877789999999999999999999999999999999999999999999999986 6779999999
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-------CCCCCCceEEEccCCCE
Q 001363 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-------GGLPENPRICFNKNGTL 636 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~ 636 (1092)
+++.+..+..+ ..+.++.|+|++. +++++.|+.|++||++++..+..+..+ .+...|.+++|+|+|++
T Consensus 246 ~~~~~~~~~~~----~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 246 EGKHLYTLDGG----DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTEEEEEEECS----SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred cCceeeeecCC----ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 99999888764 4799999999865 566777999999999998887766532 34557899999999999
Q ss_pred EEEEeCCCeEEEEECCCCc
Q 001363 637 LAVIANENRIKILETPESN 655 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~ 655 (1092)
|++|+.||.|+||++.+|.
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 9999999999999998764
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.2e-36 Score=333.27 Aligned_cols=324 Identities=13% Similarity=0.163 Sum_probs=272.6
Q ss_pred CCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001363 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
|.+.|.+++|+|||+ +++++..++.+.+|+........ ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 356899999999998 57777766666666544322221 1447999999999999999999
Q ss_pred EEeCCCEEEEEEccCCCcccceEEEc--ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc--eeEEEecCCcCe
Q 001363 413 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV 488 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v 488 (1092)
+++ |+.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999887655544554 7999999999999999 89999999999999999887 667788999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+.+++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999965 6689999999999999999998888888889999999999999999999986 667999999999988
Q ss_pred EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001363 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
..+.. . ..+.+++|+|+++++++++.++.|++||+.+++... +.. +...+.+++|+|+++++++++.||.|++
T Consensus 219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHL--HESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcC--CccceeEEEECCCCCEEEEecCCCcEEE
Confidence 77653 3 689999999999999999999999999999887653 333 3456899999999999999999999999
Q ss_pred EECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccccc
Q 001363 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1092)
Q Consensus 649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~ 728 (1092)
|++.+++.....
T Consensus 292 ~~~~~~~~~~~~-------------------------------------------------------------------- 303 (337)
T 1gxr_A 292 WRTPYGASIFQS-------------------------------------------------------------------- 303 (337)
T ss_dssp EETTTCCEEEEE--------------------------------------------------------------------
T ss_pred EECCCCeEEEEe--------------------------------------------------------------------
Confidence 999876544211
Q ss_pred CCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001363 729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~ 763 (1092)
.+...+.+++|+|+++.+++++.||.+++|++
T Consensus 304 ---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 ---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 14556788888889888888888899998885
No 40
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-35 Score=325.88 Aligned_cols=297 Identities=21% Similarity=0.275 Sum_probs=253.2
Q ss_pred eecCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEEccCCCcc--cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 391 LVRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 388999999999999965 89999999999999999754321 23446889999999999999999 89999999999
Q ss_pred EEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC------C
Q 001363 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------G 541 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d------g 541 (1092)
++||+.+++.+..+.+|...|.+++|++ ++.+|++++.||+|++||++. .....+..|...+.++.++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999999999999999999999999965 668999999999999999964 566677888899999999985 4
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC
Q 001363 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
..+++++. ++.|++||+.+++....+.+|. ..|.+++|+|++++|++++.||+|++||+.+++.+..+..+
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-- 237 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-- 237 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--
Confidence 47888876 6679999999999999999888 89999999999999999999999999999999999888765
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001363 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
..+.+++|+|++.++++++.+ .+++|++.....+..+..+...
T Consensus 238 -~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~----------------------------------- 280 (319)
T 3frx_A 238 -DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG----------------------------------- 280 (319)
T ss_dssp -SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-----------------------------------
T ss_pred -CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-----------------------------------
Confidence 358999999999999988765 5999998866444333211000
Q ss_pred eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecC
Q 001363 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765 (1092)
Q Consensus 702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~ 765 (1092)
....+...+.+++|+|+|++|++++.||.|++|++..
T Consensus 281 ---------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 281 ---------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp ---------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ---------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 0012456788999999999999999999999999754
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-37 Score=355.23 Aligned_cols=353 Identities=13% Similarity=0.186 Sum_probs=274.0
Q ss_pred CCceEEeecCCCceEEEEE----------cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg----------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..|.+++|+|+|+.++|+| +.|+.|+|||+.+++..... ....|...|.+++|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~-----------------~~~~~~~~v~~~~~ 75 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI-----------------ASLQVDSKFNDLDW 75 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS-----------------CCCCCSSCEEEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE-----------------EEEecCCceEEEEE
Confidence 4799999999997689999 88999999999987632100 02358899999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCc-ccceEEEcccccceeEEEEecC-CCcEEEEEEeCCCcEEEEECCCCc------
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS------ 476 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~------ 476 (1092)
+|++++|++++.|+.|++||+.+... ......+.+|...|.+++|+|+ ++ +|++++.|+.|++||+.+++
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccc
Confidence 99999999999999999999987211 1234467899999999999998 66 79999999999999999887
Q ss_pred eeE---EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCceEEEEEccCC-CEEEE
Q 001363 477 RTY---SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLFS 546 (1092)
Q Consensus 477 ~~~---~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~dg-~~l~~ 546 (1092)
... .+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+..+ ...+.+++|+|++ .++++
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred cccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 333 34679999999999764 2579999999999999999998888877776 6789999999998 57777
Q ss_pred EecCCCCceeEEEEeCCCC-eEEEEEe-eccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCC
Q 001363 547 CGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
++.++ .++.|++||+.++ ..+..+. +|. ..|.+++|+| +++++++++.||.|++||+.+++.+..+..+. .
T Consensus 233 ~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~--~ 306 (416)
T 2pm9_A 233 ATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG--N 306 (416)
T ss_dssp EECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS--S
T ss_pred EECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC--C
Confidence 76532 1237999999986 5666776 666 8999999999 89999999999999999999999999988664 4
Q ss_pred CCceEEEccCC-CEEEEEeCCCeEEEEECCCCceeeeccc--ccCceeeeeecCCCcccc---------------ccccC
Q 001363 624 ENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTG---------------AGIAN 685 (1092)
Q Consensus 624 ~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---------------~~~~~ 685 (1092)
.|.+++|+|++ .++++++.|+.|++|++.+......... .........+.+.....+ .....
T Consensus 307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (416)
T 2pm9_A 307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPS 386 (416)
T ss_dssp CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCS
T ss_pred ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCc
Confidence 68999999998 8999999999999999987754332211 000000001111000000 00111
Q ss_pred CceeecCCCCCCCccceeeccccccceecccc
Q 001363 686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 686 ~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~ 717 (1092)
..++| +|||+++++++.|+.|++|++.+
T Consensus 387 ~~~~~----s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 387 PAAHW----AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCEE----ETTTEEECBCTTSSCBCCBCCCC
T ss_pred cceEE----eeCCeEEEEeCCCCeEEEEEecc
Confidence 13344 78999999999999999999763
No 42
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=341.42 Aligned_cols=343 Identities=11% Similarity=0.097 Sum_probs=278.2
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCcc-EEEEEecCCeEEEEEc----CCCC------ceEEecC-------
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLY----DSLG------ARVDYDA------- 527 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~----~~~~------~~~~~~~------- 527 (1092)
.+.+|+++..........|...|.+++|++ ++. +|++++.||.|++|++ .++. ....+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNP--LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECS--SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred ccccccchhhhhheeeeeccCceEEEEECC--CCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence 456888877666656666789999999965 567 9999999999999999 7777 3444333
Q ss_pred ---CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001363 528 ---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 528 ---~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
+...|.+++|+|++++|++++. ++.|++|| .+++.+..+.+|. ..|.+++|+|+++++++++.|+.|++
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i~~-~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVE----NGELRLWN-KTGALLNVLNFHR---APIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEET----TSCEEEEE-TTSCEEEEECCCC---SCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeC----CCeEEEEe-CCCCeeeeccCCC---ccEEEEEECCCCCEEEEEecCCeEEE
Confidence 4668999999999999999986 55699999 7788888888877 89999999999999999999999999
Q ss_pred EECCCCceEEEEeCCCCCCC-------------CceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeee
Q 001363 605 WDMNKVQLLTTIDAGGGLPE-------------NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~-------------v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 671 (1092)
||+.+++.+..+..+..... +.+++|+|++ .+++++.+|.|++|++.+++....+.
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~---------- 244 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI---------- 244 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC----------
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec----------
Confidence 99999999888876543211 7889999875 58888889999999988764433322
Q ss_pred ecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEE
Q 001363 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 751 (1092)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 751 (1092)
.|...|.+++|+|+++.+++
T Consensus 245 ------------------------------------------------------------~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 245 ------------------------------------------------------------GHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp ------------------------------------------------------------CCSSCEEEEEEETTTTEEEE
T ss_pred ------------------------------------------------------------cCCCceEEEEECCCCCEEEE
Confidence 15567888999999999999
Q ss_pred eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEc
Q 001363 752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV 830 (1092)
Q Consensus 752 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~ 830 (1092)
++.||.+++|++.... ...... .|...+.+++|+|++ ++++++ ++.|++||+
T Consensus 265 ~~~d~~i~i~d~~~~~----------------------~~~~~~----~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGN----------------------SQNCFY----GHSQSIVSASWVGDD-KVISCSMDGSVRLWSL 317 (425)
T ss_dssp EETTSCEEEECSSSBS----------------------CSEEEC----CCSSCEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred EcCCCEEEEEECCCCc----------------------cceEec----CCCccEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence 9999999998865431 122211 378899999999999 777776 799999999
Q ss_pred CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce--------------------eeEeeccccC--C
Q 001363 831 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------VISKLEGHSK--R 888 (1092)
Q Consensus 831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~ 888 (1092)
.+++.+..+..|...+.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .
T Consensus 318 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (425)
T 1r5m_A 318 KQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDY 396 (425)
T ss_dssp TTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCC
T ss_pred CCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCc
Confidence 99999999999999999999999 89999999999999999999988 8899999977 9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 889 VTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 889 V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
|++++|+|++++|++++.||.|++|+++.
T Consensus 397 v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 397 IFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp EEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred eEEEEccCCCceEEEEecCceEEEEeecC
Confidence 99999999999999999999999999863
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.6e-35 Score=323.99 Aligned_cols=291 Identities=20% Similarity=0.287 Sum_probs=260.4
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
.+.+|...|.+++|+|+|++||+++.|+.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 378999999999999999999999999999999999886544 6789999999999999999 89999999999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
|+.+++++..+.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+..+..++.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9999999999999999999999965 6689999999999999999999988899999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
++.|++||+.+++.+..+.... ...+..++|+|+++++++++.|+.|++||+.+++.+..+..+..........+
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 5679999999998887765443 46799999999999999999999999999999999998877654333334444
Q ss_pred c-cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec--cc
Q 001363 631 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE 707 (1092)
Q Consensus 631 s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~d 707 (1092)
+ +++.++++++.||.|++||+.+++.+..+.+|...+.+++++ |+++.+++++ .|
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d 302 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALEND 302 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTT
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCC
Confidence 4 678999999999999999999999999999999999999997 6777888876 68
Q ss_pred cccceeccc
Q 001363 708 NKSEVEKPL 716 (1092)
Q Consensus 708 ~~i~lw~~~ 716 (1092)
++|++|+.+
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999854
No 44
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-35 Score=323.72 Aligned_cols=306 Identities=15% Similarity=0.182 Sum_probs=233.2
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001363 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1092)
+.+.+..+.+|. ..|.+++|+|+ +|++|+.|++|++||+..+ .....+....+...|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 456677888888 89999999987 8999999999999999875 3445553322456799999999999999999
Q ss_pred CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCc
Q 001363 642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 721 (1092)
Q Consensus 642 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~ 721 (1092)
.|+.|++|+........
T Consensus 78 ~D~~v~iw~~~~~~~~~--------------------------------------------------------------- 94 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT--------------------------------------------------------------- 94 (330)
T ss_dssp TTSCEEEEEC----------------------------------------------------------------------
T ss_pred CCCcEEEEEcccCcCcc---------------------------------------------------------------
Confidence 99999999975321000
Q ss_pred cccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCC
Q 001363 722 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 801 (1092)
Q Consensus 722 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~ 801 (1092)
...+ . ... + .+|
T Consensus 95 ----------------------~~~~-~-----------------------------------------~~~--~--~~h 106 (330)
T 2hes_X 95 ----------------------FEMD-L-----------------------------------------LAI--I--EGH 106 (330)
T ss_dssp ----------------------CCCE-E-----------------------------------------EEE--E--C--
T ss_pred ----------------------ccce-e-----------------------------------------EEE--E--cCC
Confidence 0000 0 000 0 037
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC----ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 802 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
...|.+++|+|++++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++.+|++|+.|++|++||..++
T Consensus 107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence 77888888988888888887 78899998842 356778899999999999999 8999999999999999999876
Q ss_pred --eeeEeeccccCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCce---eeeeeeecCCC-CcCCCCCceEEEEccCC
Q 001363 877 --EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 877 --~~~~~l~~h~~~V~~l~~spd--g~~l~s~s~Dg~I~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~l~~s~dg 948 (1092)
+++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.. ....+.....+ |. ..|.+++|++++
T Consensus 186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~ 262 (330)
T 2hes_X 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG 262 (330)
T ss_dssp EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS
T ss_pred CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC
Confidence 678899999999999999999 77999999999999999975421 11123333333 43 379999999877
Q ss_pred CEEEEEeCCcEEEEEcCCce--eeeeeccCCCC-CEEEEEEec--CCCEEEEEECCCcEEEEEcCC
Q 001363 949 TRFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 949 ~~la~~~d~~i~lwd~~~~~--~~~~~~~~h~~-~v~~l~fs~--dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
.++..+.|+.|++||..+++ .......+|.. .|.+++|+| |+++|++|+.||+|++|++..
T Consensus 263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 54444789999999998774 34444567876 999999999 789999999999999999865
No 45
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3.2e-34 Score=367.64 Aligned_cols=529 Identities=10% Similarity=0.017 Sum_probs=372.7
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC------CCcEE
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK 468 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~ 468 (1092)
+...+.+.+||| +.||.++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456788999995 58888876 68999999887532 4678999999999999999 5666543 34799
Q ss_pred EEECCCCceeEEEecCCcCe-------EEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEE
Q 001363 469 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v-------~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~ 535 (1092)
+||+.+++ ...+..|...+ ..++|+| ||+++++++.+ ..|..|++..+....... . ....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~--~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-G--PATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-C--SCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecC-C--Cccee
Confidence 99998876 57788888888 8899965 56677777754 357777776654433222 2 23457
Q ss_pred EEccCCCEEEEEecCCC--------CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 536 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
+|+| | .+++++...+ +.....+|....+.....+.+|. ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 7999 8 7777643211 12234455332223444556666 88999999998 56667788899999976
Q ss_pred CC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCC
Q 001363 608 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1092)
Q Consensus 608 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 686 (1092)
.. +.....+..+. .+...+|+|||++++.+. ++.|++|+.... .+..+..+....
T Consensus 232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~------------------- 287 (1045)
T 1k32_A 232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLES------------------- 287 (1045)
T ss_dssp ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCB-------------------
T ss_pred eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccc-------------------
Confidence 53 33444444332 367789999999998884 789999998433 222222100000
Q ss_pred ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEe-cCCcEEEEeecCCeeEEEeecC
Q 001363 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPR 765 (1092)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~~w~~~~ 765 (1092)
.. ....+...+..++|+ |||+.+++++ ++.+.+|+...
T Consensus 288 ----------------------~~------------------~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 288 ----------------------PE------------------DRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp ----------------------CC------------------SEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred ----------------------cc------------------cccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence 00 000144567789999 9999888877 77788876543
Q ss_pred CCcCcCcccccccCCccccCCCCCceeeecCCCCCCCC-CeeEEEEecCCCEEEEEeC-CeEE-EEEcCCceeeEEecCC
Q 001363 766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSASG-GVIS-LYIVMTFKTILTIMPP 842 (1092)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~-~v~~~~~s~dg~~l~~~sd-g~i~-iwd~~~~~~~~~~~~~ 842 (1092)
. . ... +. .+.. .+..++|+ ||+.++++++ +.+. +||+.+++.. .+.+|
T Consensus 327 ~----------------------~-~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~ 377 (1045)
T 1k32_A 327 T----------------------Y-VLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN 377 (1045)
T ss_dssp S----------------------B-EEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred C----------------------c-eEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC
Confidence 2 1 111 11 2555 78899999 9999999885 6688 8899877654 44477
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC----------cEEE
Q 001363 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFV 912 (1092)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg----------~I~i 912 (1092)
...+..++|+| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++ .|++
T Consensus 378 ~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 378 LGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 78999999999 899999999999999999999998888878999999999999999999887654 8999
Q ss_pred EEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCcee----------------------
Q 001363 913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC---------------------- 969 (1092)
Q Consensus 913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~---------------------- 969 (1092)
||+.+++. .....+.. .+..++|+|||++|+. +.++...+|+......
T Consensus 457 ~d~~~g~~------~~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1045)
T 1k32_A 457 YDMEGRKI------FAATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 527 (1045)
T ss_dssp EETTTTEE------EECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred EECCCCcE------EEeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence 99998652 11222222 4778999999999988 4445555554322111
Q ss_pred --------------------eeeeccCCCCCEEEEEEecCCCEEEE-------------EECCCcEEEEEcCCCceEEee
Q 001363 970 --------------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 970 --------------------~~~~~~~h~~~v~~l~fs~dg~~l~t-------------~~~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
....+..|.+.+..++|+|||+++++ ...+..|.+||+.+++.....
T Consensus 528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 607 (1045)
T 1k32_A 528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK 607 (1045)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee
Confidence 01112346678999999999987875 123457888999988754222
Q ss_pred ccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1017 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
. . ...++++| |+.+|++++.+ .|++||+....
T Consensus 608 ~------------~--v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 N------------N--LTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E------------E--EEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred c------------C--cceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 1 1 23678999 68999998766 89999996544
No 46
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.6e-35 Score=332.73 Aligned_cols=290 Identities=17% Similarity=0.228 Sum_probs=248.4
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccc------------------cceeEEEEecCCCc
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ 455 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~------------------~~v~~~~~s~d~~~ 455 (1092)
+|...|.+++|||||++||+|+ ++.+++|++.+++.+. .+..|. ..|.+++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6789999999987554 343332 2499999999999
Q ss_pred EEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001363 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1092)
Q Consensus 456 l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 535 (1092)
+|++|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999999999999999999999999965 66899999999999999999887766665 44578999
Q ss_pred EEcc-CCCEEEEEecCCCCceeEEEEeCCCCeEEEEE-------eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 536 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTY-------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 536 ~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
+|+| +++++++++. ++.|++||..++..+..+ .+|. ..|.+++|+|+++++++|+.|+.|++||+
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999 8999999986 566999999999888776 3444 89999999999999999999999999999
Q ss_pred CCCc------------eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCC
Q 001363 608 NKVQ------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 608 ~~~~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
.+.. +...+..| ...|.+++|+|++.+|++++.|+.|++||..+++.+..+.+|...|.++++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363 (393)
T ss_dssp ---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred CCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC
Confidence 7643 33444444 446899999999999999999999999999999999999999999999999864
Q ss_pred CccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001363 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~ 717 (1092)
... +|+++.+++++.|+++++|++..
T Consensus 364 ~~~----------------~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 364 SSL----------------GPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CTT----------------CTTCEEEEEEETTSEEEEEEEEE
T ss_pred cCc----------------CCCCCEEEEECCCCcEEECcccc
Confidence 322 57899999999999999999763
No 47
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-36 Score=345.57 Aligned_cols=382 Identities=13% Similarity=0.151 Sum_probs=287.8
Q ss_pred eecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeee-cCCCCcEEEEEECC-CCCEEEEEeCCC
Q 001363 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSP-DGSLLGVAYSKH 418 (1092)
Q Consensus 341 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l-~~h~~~V~~l~~sp-dg~~las~~~d~ 418 (1092)
.|+|+++ .+++++ .|+ .+++.+.. + .+|.+.|.+++|+| ++++||+|+.|+
T Consensus 34 ~f~~~~~-~~~~~~------~w~-~~g~~~~~-------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg 86 (437)
T 3gre_A 34 EFGPIQE-IVRSPN------MGN-LRGKLIAT-------------------LMENEPNSITSSAVSPGETPYLITGSDQG 86 (437)
T ss_dssp GGCCCCC-CCCCCC------GGG-CCCCEEEE-------------------ECTTTTSCEEEEEEECSSSCEEEEEETTS
T ss_pred hcCCccc-cccccc------ccc-ccceEEee-------------------eccCCCCceEEEEECCCCCCEEEEecCCc
Confidence 5889998 455544 377 44555543 4 78999999999999 999999999999
Q ss_pred EEEEEEccC---CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC---CCceeEEEecCCcCeEEEe
Q 001363 419 IVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLC 492 (1092)
Q Consensus 419 ~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~i~ 492 (1092)
+|+|||+.+ +........+ +|...|.+++|+|+++ +|++|+.|++|++||++ +++.+..+.+| .+..+.
T Consensus 87 ~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~ 161 (437)
T 3gre_A 87 VIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKIN 161 (437)
T ss_dssp EEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEE
T ss_pred eEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEE
Confidence 999999987 5534333333 5999999999999999 89999999999999994 77877777766 677777
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE--EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001363 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~--~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1092)
+.+.+ +...+.++. +++++.++++++. ++.|++||+.+++.+..
T Consensus 162 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 162 LKNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQI 207 (437)
T ss_dssp GGGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEE
T ss_pred ccCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEE
Confidence 75531 112333444 6789999999986 66799999999999999
Q ss_pred Eee--ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc----cCCCEEEEEeCCC
Q 001363 571 YQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIANEN 644 (1092)
Q Consensus 571 ~~~--~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~dg 644 (1092)
+.+ |. ..|.+++|+|+++++++|+.||.|++||+++++.+..+..... ..|.+++|+ |++.++++++.||
T Consensus 208 ~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 208 IENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp EECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred EccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcCCC
Confidence 988 55 8999999999999999999999999999999999988863322 368899665 4688999999999
Q ss_pred eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001363 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~ 724 (1092)
.|++||+.+++.+..+.++...+..+.++|.
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 314 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPI------------------------------------------------- 314 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSCB-------------------------------------------------
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceeccc-------------------------------------------------
Confidence 9999999999888877776665544444321
Q ss_pred ccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001363 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 804 (1092)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~ 804 (1092)
++.+ .+. .+.+..|...
T Consensus 315 ---------------------~~~l----~~~--------------------------------------~~~~~~~~~~ 331 (437)
T 3gre_A 315 ---------------------EKGL----EEL--------------------------------------NFCGIRSLNA 331 (437)
T ss_dssp ---------------------CSSG----GGC--------------------------------------CCCCCCSGGG
T ss_pred ---------------------cccc----ccc--------------------------------------eecccccCCc
Confidence 1110 000 0000127788
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCC---CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeE
Q 001363 805 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 880 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 880 (1092)
|.+++|+ ++++|++++ |+.|++||+.+++....+.+|. ..+....+++ ...+++.. |+...+....
T Consensus 332 v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~ 401 (437)
T 3gre_A 332 LSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVD 401 (437)
T ss_dssp GCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC--------
T ss_pred eEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccC
Confidence 9999999 778899887 7999999999999999888764 3456666776 55454443 3344455556
Q ss_pred eeccccCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 001363 881 KLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spd--g~~l~s~s~Dg~I~iwd 914 (1092)
....|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 402 ~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 402 DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 66779999999999998 78999999999999995
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-35 Score=341.78 Aligned_cols=346 Identities=13% Similarity=0.120 Sum_probs=284.0
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001363 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
.+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence 45578999999999999999999999999876654 23345 4455668899999 899999999999999999999
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
...+.+|...|.+++|++ ++.+|++++.||.|++||+.+.+....+..|...|.+++|+|++++|++++. ++.|
T Consensus 132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v 205 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI 205 (420)
T ss_dssp EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence 988889999999999965 6679999999999999999999999999999999999999999999999986 5669
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE
Q 001363 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1092)
++||+.+++.+..+..+..+...+.++++.|.+...+ .. .+...+.+++|+|+++++
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~--~~~~~v~~~~~s~~~~~l 262 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL---------------------HE--ISTSKKNNLEFGTYGKYV 262 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC---------------------GG--GCCCCCCTTCSSCTTEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCccee---------------------ee--cccCcccceEEcCCCCEE
Confidence 9999999999999988766668899998887643220 01 112457889999999999
Q ss_pred EEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001363 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 638 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~ 717 (1092)
++++.||.|++||+.+++....+.
T Consensus 263 ~~~~~dg~i~i~d~~~~~~~~~~~-------------------------------------------------------- 286 (420)
T 3vl1_A 263 IAGHVSGVITVHNVFSKEQTIQLP-------------------------------------------------------- 286 (420)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC--------------------------------------------------------
T ss_pred EEEcCCCeEEEEECCCCceeEEcc--------------------------------------------------------
Confidence 999999999999987553221100
Q ss_pred ccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCC
Q 001363 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797 (1092)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 797 (1092)
T Consensus 287 -------------------------------------------------------------------------------- 286 (420)
T 3vl1_A 287 -------------------------------------------------------------------------------- 286 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEEecCCC-EEEEEe-CCeEEEEEcCCcee-eEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEc
Q 001363 798 DSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873 (1092)
Q Consensus 798 ~~~~~~~v~~~~~s~dg~-~l~~~s-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 873 (1092)
..|...|.+++|+|+++ ++++++ ||.|++||+.+++. +..+.. |...+.++.+. ++++|++++.||.|++|++
T Consensus 287 -~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 287 -SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp -CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEE
T ss_pred -cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEec
Confidence 01566788888888888 888877 68899999887654 666665 56677888654 5789999999999999999
Q ss_pred CCc---------eeeEeeccccCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCC
Q 001363 874 RSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 874 ~~~---------~~~~~l~~h~~~V~~l~~spdg~---~l~s~s~Dg~I~iwd~~~ 917 (1092)
... .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 873 22334567899999999999999 788888899999999875
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.9e-34 Score=321.32 Aligned_cols=321 Identities=14% Similarity=0.141 Sum_probs=266.9
Q ss_pred ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001363 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1092)
Q Consensus 439 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~ 518 (1092)
.|.++|.+++|+|||+ .++++..++.+.+|+...........+|...|.+++|++ +++++++++ ||.|++||+.+
T Consensus 7 ~~~~~v~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQ--MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEEECCEEEECSSSC--EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTS
T ss_pred ccCCceeEEEECCCCC--EEEeecCCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCC
Confidence 3667899999999999 787777777777776665555555568999999999965 678999998 99999999987
Q ss_pred CCceE---Eec--CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCC
Q 001363 519 LGARV---DYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 519 ~~~~~---~~~--~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1092)
..... .+. .+...+.+++|+|+++++++++. ++.|++||..+++ ....+..|. ..+.+++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----ASTLSIWDLAAPTPRIKAELTSSA---PACYALAISPDSK 154 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----SSEEEEEECCCC--EEEEEEECSS---SCEEEEEECTTSS
T ss_pred CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCCcceeeecccCC---CceEEEEECCCCC
Confidence 65322 222 67889999999999999999876 6679999999887 555666666 8899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeee
Q 001363 592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 671 (1092)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 671 (1092)
++++++.||.|++||+.+++.+..+..+. ..+.+++|+|+++++++++.||.|++||+.+++.....
T Consensus 155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----------- 221 (337)
T 1gxr_A 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----------- 221 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred EEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-----------
Confidence 99999999999999999999988887653 46899999999999999999999999998754222110
Q ss_pred ecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEE
Q 001363 672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 751 (1092)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 751 (1092)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEc
Q 001363 752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV 830 (1092)
Q Consensus 752 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~ 830 (1092)
.+...+.+++|+|+++++++++ ++.|++||+
T Consensus 222 ------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 222 ------------------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp ------------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ------------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 0334566777888888888777 578888888
Q ss_pred CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcE
Q 001363 831 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910 (1092)
Q Consensus 831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I 910 (1092)
.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|
T Consensus 254 ~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 254 NKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp TSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred CCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 77665 45677899999999999 8999999999999999999999887554 488999999999999999999999999
Q ss_pred EEEEc
Q 001363 911 FVWDV 915 (1092)
Q Consensus 911 ~iwd~ 915 (1092)
++|++
T Consensus 331 ~iw~~ 335 (337)
T 1gxr_A 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.5e-36 Score=343.15 Aligned_cols=350 Identities=12% Similarity=0.113 Sum_probs=283.1
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
+.+++++|+|+|+ +|++|+.|+.|++||+.+++.... +..| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence 3456899999999 589999999999999988765432 3344 455566889999999999
Q ss_pred eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeec
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 494 (1092)
+.|+.|++||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999875443 5679999999999999999 89999999999999999999999999999999999996
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
+ ++.+|++++.||.|++||+++.+....+.. +...+.++++.+++...+ .
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------------------~ 243 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL-------------------------H 243 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC-------------------------G
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee-------------------------e
Confidence 5 678999999999999999999888777764 445777787776543221 1
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEE
Q 001363 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILE 650 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~ 650 (1092)
..+ ...+.+++|+|+++++++++.||.|++||+.+++....+... +...+.+++|+|+++ +|++++.||.|++||
T Consensus 244 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 244 EIS---TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp GGC---CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ecc---cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 111 267888899999999999999999999999999888777542 335689999999999 999999999999999
Q ss_pred CCCCce-eeeccc-ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccc-cc
Q 001363 651 TPESNS-VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS-LL 727 (1092)
Q Consensus 651 ~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~-~~ 727 (1092)
+.++.. +..+.. +...+.++.+ ++++++++++.|+.+++|++.......... ..
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~ 376 (420)
T 3vl1_A 320 LRSPECPVGEFLINEGTPINNVYF-----------------------AAGALFVSSGFDTSIKLDIISDPESERPAIEFE 376 (420)
T ss_dssp TTCTTSCSEEEEESTTSCEEEEEE-----------------------ETTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred cCCCcCchhhhhccCCCCceEEEe-----------------------CCCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence 998743 566665 5556665544 467889999999999999987532221110 00
Q ss_pred --cCCccccccEEEEEEecCCc---EEEEeecCCeeEEEeec
Q 001363 728 --LPSKVKANKISRLTYNNGGQ---AIFALASNGVHLMWRWP 764 (1092)
Q Consensus 728 --~~~~~~~~~i~~l~~s~~g~---~l~~~~~dg~i~~w~~~ 764 (1092)
.....+...|.+++|+|+++ .+++++.+|.+.+|++.
T Consensus 377 ~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 377 TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 01134778899999999999 89999999999999864
No 51
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.9e-35 Score=358.59 Aligned_cols=299 Identities=18% Similarity=0.252 Sum_probs=253.2
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
....|++|++.|++++|+|++..+|++|+.|++|+|||+.++..... .....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence 44678999999999999998755899999999999999987543211 0112277999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE---e
Q 001363 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---E 482 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---~ 482 (1092)
|+|++|++|+.|++|+|||+.++.... .+.+|...|.+++|+|+++ .|++|+.|++|++||.......... .
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999986554 6789999999999999999 7999999999999997654433222 4
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+|...|.+++|++......+++++.||+|++||++.......+..|...|.+++|+|+|++|++++. ++.|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 6889999999988665579999999999999999999888899999999999999999999999986 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC-----------------CCCC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPEN 625 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v 625 (1092)
.+++.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+
T Consensus 591 ~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
T 3dm0_A 591 AEGKKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665 (694)
T ss_dssp TTTEEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCE
T ss_pred CCCceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEe
Confidence 999988776543 5799999999988777665 56699999999998887754311 1125
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 626 PRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.+++|+|+|++|++|+.||.|++|++.
T Consensus 666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 666 TSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 689999999999999999999999975
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.4e-34 Score=330.67 Aligned_cols=328 Identities=16% Similarity=0.223 Sum_probs=281.1
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
....|.+|.+.|.. +++++|+ ++++|+.||+|++||+.+++.+.. +.+|...|.+++|+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 168 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR 168 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE
T ss_pred eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec
Confidence 34678999987643 3555687 689999999999999999987765 77899999999997
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001363 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
+++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|.
T Consensus 169 --~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 239 (445)
T 2ovr_B 169 --DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHV 239 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred --CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence 6799999999999999999986554 788999999999996 44 79999999999999999999999999999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
..|.++++ ++.++++++.||.|++||+++.+....+..+...+.+++| ++.++++++. ++.|++||+.++
T Consensus 240 ~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~ 309 (445)
T 2ovr_B 240 AAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG 309 (445)
T ss_dssp SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC
T ss_pred ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC
Confidence 99999988 5678999999999999999999888899999999999998 8899999986 566999999999
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-CCCCCceEEEccCCCEEEEEeCCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
+.+..+.+|. ..+.++.++ ++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||
T Consensus 310 ~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 382 (445)
T 2ovr_B 310 NCIHTLTGHQ---SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG 382 (445)
T ss_dssp CEEEEECCCC---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CEEEEEcCCc---ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence 9999998887 788887774 6799999999999999999999999887632 34568888885 68999999999
Q ss_pred eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001363 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~ 724 (1092)
.|++|++.+++.+..+...
T Consensus 383 ~v~iwd~~~~~~~~~~~~~------------------------------------------------------------- 401 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVTL------------------------------------------------------------- 401 (445)
T ss_dssp EEEEEETTTCCEEEEEEEC-------------------------------------------------------------
T ss_pred eEEEEECCCCceeeeeecc-------------------------------------------------------------
Confidence 9999999988665544210
Q ss_pred ccccCCccccccEEEEEEecCCcEEEEeecCCe----eEEEeecC
Q 001363 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR 765 (1092)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----i~~w~~~~ 765 (1092)
....+...|.+++|+|++..+++++.||. +.+||+..
T Consensus 402 ----~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 402 ----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp ----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ----ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 00126677889999999999999999987 88888764
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-36 Score=346.94 Aligned_cols=337 Identities=15% Similarity=0.228 Sum_probs=263.9
Q ss_pred CceEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 579 NSVSVVHFDTAKD-QILAA----------GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 579 ~~v~~~~~~~~~~-~l~~~----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
..+.+++|+|+++ +++++ +.|+.|++||+.++.....+....+...|.+++|+|++++|++++.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 3577899999987 88888 899999999999876332222122345699999999999999999999999
Q ss_pred EEECCCC----ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccc
Q 001363 648 ILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 723 (1092)
Q Consensus 648 iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~ 723 (1092)
+|++.+. .....+.+
T Consensus 93 vw~~~~~~~~~~~~~~~~~------------------------------------------------------------- 111 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSN------------------------------------------------------------- 111 (416)
T ss_dssp EECCSSTTSCCCEEEECCC-------------------------------------------------------------
T ss_pred EeecccccccccchhhccC-------------------------------------------------------------
Confidence 9998862 22222222
Q ss_pred cccccCCccccccEEEEEEecC-CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCC
Q 001363 724 QSLLLPSKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 802 (1092)
Q Consensus 724 ~~~~~~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~ 802 (1092)
|...|.+++|+|+ +..+++++.||.|++|++......... .... ..... ..|.
T Consensus 112 ---------h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~~~--------~~~~~--~~~~ 165 (416)
T 2pm9_A 112 ---------HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN-------YTPL--------TPGQS--MSSV 165 (416)
T ss_dssp ---------SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT-------CCCB--------CCCCS--CCSS
T ss_pred ---------CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc-------cccc--------ccccc--cCCC
Confidence 5566777788887 777888888888888876543210000 0000 00001 1488
Q ss_pred CCeeEEEEecC-CCEEEEEe-CCeEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCCCEEEEEeCCC---cEEEE
Q 001363 803 EAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGMDDS---TILIY 871 (1092)
Q Consensus 803 ~~v~~~~~s~d-g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~~dg---~v~iw 871 (1092)
..|.+++|+|+ +.++++++ |+.|++||+.+++.+..+..+ ...+.+++|+|++..++++++.|+ .|++|
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence 89999999999 78888887 799999999999999998876 788999999994447999999999 99999
Q ss_pred EcCCc-eeeEeec-cccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC
Q 001363 872 NARSS-EVISKLE-GHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 872 d~~~~-~~~~~l~-~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
|+.++ +.+..+. +|...|++++|+| ++++|++++.|+.|++||+.+++. +....+|.. .|.+++|+|++
T Consensus 246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-----~~~~~~~~~---~v~~~~~s~~~ 317 (416)
T 2pm9_A 246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-----LSQFPARGN---WCFKTKFAPEA 317 (416)
T ss_dssp ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE-----EEEEECSSS---CCCCEEECTTC
T ss_pred eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-----ceeecCCCC---ceEEEEECCCC
Confidence 99986 6778888 8999999999999 999999999999999999998653 333334443 79999999999
Q ss_pred -CEEEE-EeCCcEEEEEcCCceeeeee----------------------------------ccCCCCCEEEEEEecCCCE
Q 001363 949 -TRFLL-VHETHLAIYEAEELTCLKQW----------------------------------FPISSVPISQATFSCDCRM 992 (1092)
Q Consensus 949 -~~la~-~~d~~i~lwd~~~~~~~~~~----------------------------------~~~h~~~v~~l~fs~dg~~ 992 (1092)
.+|++ +.|+.|++||+.++...... ...|..++.+++|||||++
T Consensus 318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 397 (416)
T 2pm9_A 318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL 397 (416)
T ss_dssp TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence 78888 68899999999876643321 0115678889999999999
Q ss_pred EEEEECCCcEEEEEcCCC
Q 001363 993 VFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 993 l~t~~~Dg~i~vwd~~~~ 1010 (1092)
|++++.|++|+||++.+.
T Consensus 398 la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 398 VQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ECBCTTSSCBCCBCCCCC
T ss_pred EEEeCCCCeEEEEEeccC
Confidence 999999999999999875
No 54
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.9e-34 Score=318.73 Aligned_cols=289 Identities=20% Similarity=0.222 Sum_probs=240.4
Q ss_pred eeecCCCCcEEEEEE-----CC-CCCEEEEEeCCCEEEEEEccCCCcc----cceEEEcccccceeEEEEecCCCcEEEE
Q 001363 390 ALVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVI 459 (1092)
Q Consensus 390 ~~l~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~ 459 (1092)
..+.+|...|.+++| ++ |+++||+|+.|++|++||+.+++.. .....+.+|...|.+++|+|++. +++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~ 92 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAI 92 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEE
Confidence 348899999999999 77 9999999999999999999865421 23446889999999999999999 899
Q ss_pred EEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEE
Q 001363 460 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMA 536 (1092)
Q Consensus 460 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~ 536 (1092)
+|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+... ...... .+...+.+++
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeee
Confidence 999999999999999999999999999999999965 6689999999999999999743 333322 5677899999
Q ss_pred EccCC----------CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 537 YSANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1092)
Q Consensus 537 ~s~dg----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 606 (1092)
|+|++ .++++++. ++.|++|| .+++....+.+|. ..|.+++|+|++++|++|+.||.|++||
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred eccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99987 68888876 67799999 4567777888877 8999999999999999999999999999
Q ss_pred CC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceee--ecc-----------cccCceeeeee
Q 001363 607 MN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSV 672 (1092)
Q Consensus 607 ~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----------~~~~~v~~~~~ 672 (1092)
+. .......+... ..|.+++|+|++.+++++ .|+.+++|++.++.... .+. +|...+.+++|
T Consensus 242 ~~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (343)
T 2xzm_R 242 ILNLTYPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317 (343)
T ss_dssp SSCCSSCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred CCCCcccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence 94 44444444322 348999999999888755 57789999998765432 222 45666777777
Q ss_pred cCCCccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001363 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~ 717 (1092)
+ |+|+.+++++.|+.|++|++..
T Consensus 318 s----------------------p~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 318 N----------------------ALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp C----------------------SSSCCEEEEETTSEEEEEEEEE
T ss_pred C----------------------CCCCeEEEecCCceEEEEEEEc
Confidence 5 7899999999999999999764
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.7e-34 Score=331.72 Aligned_cols=305 Identities=17% Similarity=0.230 Sum_probs=267.0
Q ss_pred cceeeecccCCCCc-eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001363 324 KTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V-~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
.....+|.+|.+.| .+++| +++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.++
T Consensus 111 ~~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l 168 (464)
T 3v7d_B 111 VPQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWAL 168 (464)
T ss_dssp CCEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEE
T ss_pred CcceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEE
Confidence 34567899999886 56666 455 699999999999999999987765 77899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec--CCCcEEEEEEeCCCcEEEEECCCCce---
Q 001363 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR--- 477 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~--- 477 (1092)
+|+|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|++|++||+.++..
T Consensus 169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~ 242 (464)
T 3v7d_B 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPD 242 (464)
T ss_dssp EECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC--
T ss_pred EEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccc
Confidence 999988 99999999999999999986554 7889999999999995 556 899999999999999988753
Q ss_pred --------------------eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEE
Q 001363 478 --------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1092)
Q Consensus 478 --------------------~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 537 (1092)
+..+.+|...|.++.. ++.++++++.||.|++||+.+.+....+..+...|.+++|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp ----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 5567889999988843 5679999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001363 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
+|+++++++++. ++.|++||+.+++.+..+.+|. ..|.++.|+ +.++++++.||.|++||+.++.......
T Consensus 319 ~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 319 DHERKRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp ETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence 999999999986 5669999999999999999888 899999997 5799999999999999999988776665
Q ss_pred CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeee-cccccCceeeeeec
Q 001363 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN 673 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~ 673 (1092)
.. ..+..++|+++++++++++ ||.|++||+.+++.+.. ...+...|.+++++
T Consensus 390 ~~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 390 HT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp CT---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred CC---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 32 3467889999999999998 89999999999998875 67788889888886
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.8e-34 Score=327.68 Aligned_cols=298 Identities=15% Similarity=0.138 Sum_probs=249.3
Q ss_pred cceeeecccCCCCceEEeecCCC-ceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg-~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l 402 (1092)
......+.+|.+.|++++|+|+| + +||+|+.||.|+|||+.+++...... ..+|...|.++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~ 124 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGM 124 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEE
Confidence 45677889999999999999999 6 79999999999999999887765411 34799999999
Q ss_pred EECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001363 403 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 403 ~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 481 (1092)
+|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999996 33332222234558899999999999 8999999999999998 68889999
Q ss_pred ecCCcCeEEEeecccCCcc-EEEEEecCCeEEEEEcCC----CCceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCce
Q 001363 482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGES 555 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~ 555 (1092)
.+|...|.+++|++ ++. ++++++.||.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 99999999999965 456 999999999999999987 3344444 5788999999999 9999999986 66
Q ss_pred eEEEEeCCCCeEEEEEeecccc--------------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC
Q 001363 556 FLVEWNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
.|++||+.+++....+.+|... ...+..++|+|++++ +++.|+.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 7999999999887777765411 133445666777666 777999999999999999999987655
Q ss_pred CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 622 LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
...+..++|+|++++|++++ |+.|++|++.+
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55677789999999999997 89999999874
No 57
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.5e-34 Score=328.56 Aligned_cols=299 Identities=13% Similarity=0.128 Sum_probs=257.4
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC------eeEEeeeeeeecccccceeeEeeecCCCCc
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ------KLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~------~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~ 398 (1092)
.+...+.+|.+.|++++|+| + +|++|+.||+|+|||+.+++ .+.. +.+|...
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~~h~~~ 64 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYS-------------------HFVHKSG 64 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEE-------------------EECCTTC
T ss_pred hhhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceE-------------------EecCCCc
Confidence 45678899999999999999 4 68999999999999999887 3332 6689999
Q ss_pred EEEEEECCC----C---CEEEEEeCCCEEEEEEccCCCccc--ceEEEccc-----ccceeEEEEe----cCCCcEE-EE
Q 001363 399 VNRVVWSPD----G---SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAH-----VGNVNDLAFS----APCKQIS-VI 459 (1092)
Q Consensus 399 V~~l~~spd----g---~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h-----~~~v~~~~~s----~d~~~l~-l~ 459 (1092)
|.+++|+|+ | ++|++++.|+.|++||+.+++... ....+..| ...|.+++|+ |+++ . |+
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~ 142 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLV 142 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEE
Confidence 999999999 9 999999999999999999887510 03367778 5899999999 9999 7 99
Q ss_pred EEeCCCcEEEEECCC------CceeE-----EEec-------CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc
Q 001363 460 TCGDDKTIKVWDAVT------GSRTY-----SFEG-------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 521 (1092)
Q Consensus 460 s~~~d~~i~vwd~~~------~~~~~-----~~~~-------~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 521 (1092)
+++.|+.|++||+.+ ++.+. .+.+ |...|.+++|++ ++ ++++++.||.|++||+++.+.
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~ 219 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRP 219 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEE
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCce
Confidence 999999999999998 77776 7744 889999999965 66 999999999999999999888
Q ss_pred eEEecC---C---CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee-------------ccccCCceE
Q 001363 522 RVDYDA---P---GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------LQLQHNSVS 582 (1092)
Q Consensus 522 ~~~~~~---~---~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~ 582 (1092)
...+.. | ...+.+++|+|++++|++++.++ ..+.|++||+.+++.+..+.+ |. ..|.
T Consensus 220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~ 295 (397)
T 1sq9_A 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVM 295 (397)
T ss_dssp EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEE
T ss_pred eEEEeccccccccCCccceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccC---CcEE
Confidence 888888 7 88999999999999999998620 017899999999999999988 66 8999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe------CC-------------CCCCCCceEEEccCC---------
Q 001363 583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG--------- 634 (1092)
Q Consensus 583 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~--------- 634 (1092)
+++|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++
T Consensus 296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 375 (397)
T 1sq9_A 296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL 375 (397)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccc
Confidence 99999999999999999999999999999999988 43 014569999999998
Q ss_pred -CEEEEEeCCCeEEEEECCCC
Q 001363 635 -TLLAVIANENRIKILETPES 654 (1092)
Q Consensus 635 -~~l~~~~~dg~i~iw~~~~~ 654 (1092)
++|++++.||.|++|++.++
T Consensus 376 ~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 376 NESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SCEEEEEETTTEEEEEEEEC-
T ss_pred cceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998765
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-36 Score=347.68 Aligned_cols=341 Identities=10% Similarity=0.058 Sum_probs=249.8
Q ss_pred eeeecccCCCCceEEeecCCC---------ceEEEE-------------------EcCCCcEEEEecCCCCeeEEeeeee
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNFKV 377 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg---------~~llas-------------------g~~dg~i~iwd~~~~~~~~~~~~~~ 377 (1092)
+..++. +.+.|++|+|+|++ + +||+ |+.|++|+|||+.+++.....
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~---- 199 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK---- 199 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE----
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE----
Confidence 334444 46689999999886 4 4555 456788999999887643210
Q ss_pred eecccccceeeEeeecCCCCcEEEEEECCC------CCEEEEEeCCCEEEEEEccCCCcc--------cceEEEcccccc
Q 001363 378 WDIGACSMLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHVGN 443 (1092)
Q Consensus 378 ~d~~~~~~~~~~~~l~~h~~~V~~l~~spd------g~~las~~~d~~i~iwd~~~~~~~--------~~~~~~~~h~~~ 443 (1092)
...+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.++... .....+.+|...
T Consensus 200 -----------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~ 268 (524)
T 2j04_B 200 -----------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL 268 (524)
T ss_dssp -----------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred -----------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence 1125568899999999997 579999999999999999877532 123367899999
Q ss_pred eeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEecCCcCeEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCc
Q 001363 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGA 521 (1092)
Q Consensus 444 v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~ 521 (1092)
|++++|++++ .|++|+.||+|++||++++. ....+.+|...|.++++...+++ .+|++++.||+|++||+++.+.
T Consensus 269 v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 269 ITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp EEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred EEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 9999999864 59999999999999999874 45678999999999954335566 7999999999999999988766
Q ss_pred eEEecCCC--CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC
Q 001363 522 RVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1092)
Q Consensus 522 ~~~~~~~~--~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 599 (1092)
...+..+. ..+.+++|+|+++.+++++. ++.|++||++++.++..+.+|. ..|.+++|+|+++.|++|+.|
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEETT
T ss_pred ccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEECC
Confidence 55554443 35788999999999988865 6679999999999888888887 899999999999999999999
Q ss_pred CcEEEEECCCCceEEEEeCC---CCCCCCceEEEccCCCEEEEEeCCCeEEEEECC-CCceeeecccccCceeeeeecCC
Q 001363 600 HVIKIWDMNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
|+|++||+..+ .+...... .....+..++|+|+++.+. ... .+.+|... ++..+..+.+|...|.+++|+|+
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~ 494 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNET 494 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCS
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCC
Confidence 99999998654 21111100 0111356889999998553 222 23344332 45677788899999999999854
Q ss_pred CccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
+ +.+..+++|+.+|.|+||++.
T Consensus 495 ~-------------------~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 495 S-------------------AGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp T-------------------TTTTEEEEECTTSEEEEEECS
T ss_pred C-------------------CccHHHHhhccCceEEEEEcc
Confidence 2 235689999999999999976
No 59
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=317.94 Aligned_cols=292 Identities=12% Similarity=0.099 Sum_probs=259.6
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
....|.+|++.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 83 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVD 83 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEc
Confidence 4467899999999999999998 689999999999999999987765 67899999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----CcEEEEECCCCc----
Q 001363 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS---- 476 (1092)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~~---- 476 (1092)
|++++|++++.|+.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 84 CFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcccee
Confidence 999999999999999999999987655 344 888999999999999 78999888 999999988664
Q ss_pred -------eeEEEecCCc--CeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEE
Q 001363 477 -------RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1092)
Q Consensus 477 -------~~~~~~~~~~--~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 546 (1092)
.+..+..|.. .+.+++|++ ++.+|++++.||.|++||+.+ ......+..+...|.+++|+|++++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 158 LTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp EEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence 3455566666 899999965 668999999999999999998 6667788888999999999999999999
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCCce
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQL 612 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--------------~i~iwd~~~~~~ 612 (1092)
++. ++.|++||+.+++.+..+.. . ..+..++|+|+++++++++.++ .+++||..+++.
T Consensus 236 ~~~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 236 SSR----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp EET----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred ecC----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 976 66799999999999888873 3 6899999999999999999888 899999999999
Q ss_pred EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001363 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
+..+..+. ..|.+++|+|++++|++++.||.|++|++..+.
T Consensus 308 ~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 308 IGRVQGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred hhheeccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 99988664 469999999999999999999999999998653
No 60
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=310.58 Aligned_cols=293 Identities=20% Similarity=0.269 Sum_probs=256.1
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
....++|.+|.+.|++++| |+++ +|++|+.||.|+|||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 4677899999999999999 9998 689999999999999988776654 556999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
|+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ .+++++.|+.|++|| .++.+..+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999876554555578899999999999 456 799999999999999 7888899999
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
|...+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||.
T Consensus 141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence 9999999999763 557999999999999999 3445555555 788999999999999 777765 667999999
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
.+++.+..+.+|. ..|.+++|+|++ .+++++.||.|++||+.+++.+..+..+. ..+.+++|+|+++ +++++.
T Consensus 213 ~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~ 285 (313)
T 3odt_A 213 HTGDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSS 285 (313)
T ss_dssp TTCCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEET
T ss_pred CchhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeC
Confidence 9999999999887 899999999998 69999999999999999999999998764 3689999999998 667999
Q ss_pred CCeEEEEECCCCceee
Q 001363 643 ENRIKILETPESNSVD 658 (1092)
Q Consensus 643 dg~i~iw~~~~~~~~~ 658 (1092)
||.|++|++.+++...
T Consensus 286 dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 286 DNLVRIFSQEKSRWAS 301 (313)
T ss_dssp TSCEEEEESCGGGCCC
T ss_pred CCcEEEEeCCCCceee
Confidence 9999999999775543
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.1e-33 Score=322.50 Aligned_cols=319 Identities=18% Similarity=0.280 Sum_probs=271.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.||+|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 6689887643 355579999999999999999999987555 678999999999998 44 799999999999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+.+++.+..+.+|...|.+++++ +..+++++.||.|++||+.+.+....+..+...+.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 99999999999999999999983 368999999999999999999998899999999999998 7889999886
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++.|++||..+++.+..+.+|. ..|.++.| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~- 327 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL- 327 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE-
T ss_pred --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE-
Confidence 5669999999999999998887 88999999 788999999999999999999999988876533 4555554
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccc
Q 001363 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 711 (1092)
Q Consensus 632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 711 (1092)
+++++++++.||.|++||+.+++.+..+..+
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------ 358 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------ 358 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred -eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence 5779999999999999998765433222100
Q ss_pred eeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCce
Q 001363 712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791 (1092)
Q Consensus 712 lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 791 (1092)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001363 792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
..|...|.+++|+ ++++++++ ||.|++||+.+++.+..+ ..|...|.+++|+| ++.++|+|+.|
T Consensus 359 -------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~d 428 (445)
T 2ovr_B 359 -------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRN 428 (445)
T ss_dssp -------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSS
T ss_pred -------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccC
Confidence 0155667777774 57788887 789999999999888887 46788999999999 89999999999
Q ss_pred Cc----EEEEEcCC
Q 001363 866 ST----ILIYNARS 875 (1092)
Q Consensus 866 g~----v~iwd~~~ 875 (1092)
|+ |.+||+..
T Consensus 429 g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 429 GTEETKLLVLDFDV 442 (445)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCccEEEEEECCC
Confidence 98 99999875
No 62
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.2e-34 Score=321.34 Aligned_cols=300 Identities=12% Similarity=0.209 Sum_probs=249.7
Q ss_pred CcceeeecccCCCCceEEeecCCCceEEEEEcC---CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcE
Q 001363 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1092)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V 399 (1092)
|......+.+|.+.|++++|+|++++++++|+. |+.|+|||+.+++..... ..+|...|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v 68 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPI 68 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcE
Confidence 445567778999999999999999878889887 999999999998865431 22589999
Q ss_pred EEEEECCC---CCEEEEEeCCCEEEEEEccCCC-cccceEEEcccccceeEEE------EecCCCcEEEEEEeCCCcEEE
Q 001363 400 NRVVWSPD---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 400 ~~l~~spd---g~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~------~s~d~~~l~l~s~~~d~~i~v 469 (1092)
.+++|+|+ |++|++|+.|+.|++||+.+++ .+. .+.+|...|.+++ |+|+++ .|++++.|+.|++
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~v 143 (357)
T 3i2n_A 69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKV 143 (357)
T ss_dssp EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEE
T ss_pred EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEE
Confidence 99999998 7999999999999999999886 443 6789999999995 568898 8999999999999
Q ss_pred EECCCCc-eeEEEecCCc----CeEEEeec--ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc---
Q 001363 470 WDAVTGS-RTYSFEGHGA----PVYSLCPH--AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--- 539 (1092)
Q Consensus 470 wd~~~~~-~~~~~~~~~~----~v~~i~~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--- 539 (1092)
||+.+++ .+..+..|.+ .+.+++|. .++++.++++++.||.|++||+++...... ..+...+.+++|+|
T Consensus 144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSS
T ss_pred EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCC
Confidence 9999987 7788876665 78888742 245778999999999999999998776443 55677999999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe-----eccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---
Q 001363 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV--- 610 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~--- 610 (1092)
++.++++++. ++.|++||+.+++....+. +|. ..|.+++|+|+++ ++++++.||.|++||+..+
T Consensus 223 ~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 223 SMNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp SCCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 9999999976 6679999998887665554 555 8999999999998 7999999999999998754
Q ss_pred ----------------ceEEEEeCCCCCCCCceEEEccCCCEEE-EEeCCCeEEEEECCCCc
Q 001363 611 ----------------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN 655 (1092)
Q Consensus 611 ----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~ 655 (1092)
+.+..+..+ ...|.+++|+|++++|+ +++.||.|++|++.+..
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 296 SKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp --CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 345555554 45699999999999998 79999999999998653
No 63
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-35 Score=340.20 Aligned_cols=350 Identities=10% Similarity=0.043 Sum_probs=242.2
Q ss_pred CCCcEEEEEECCCC---------CEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC
Q 001363 395 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1092)
Q Consensus 395 h~~~V~~l~~spdg---------~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 465 (1092)
+.+.|.+|+|+|++ ++||+|+.++. + -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C------------------Cccchhhh--hhccCCCCc
Confidence 57899999999987 89999986642 0 01378998 799999999
Q ss_pred cEEEEECCCCcee----EEEecCCcCeEEEeeccc----CCccEEEEEecCCeEEEEEcCCCCc-----------eEEec
Q 001363 466 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD 526 (1092)
Q Consensus 466 ~i~vwd~~~~~~~----~~~~~~~~~v~~i~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~ 526 (1092)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887653 456778899999999886 3467999999999999999976542 23567
Q ss_pred CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEE--EEcCCC-CEEEEEeCCCcE
Q 001363 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI 602 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~s~dg~i 602 (1092)
.|...|.+++|++++ .|++++. ++.|++||+.++. ....+.+|. ..|.++ +|+|++ .+|++++.|++|
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 788899999999865 7888876 7789999999774 445677777 899999 578887 899999999999
Q ss_pred EEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccccc
Q 001363 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 682 (1092)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (1092)
++||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++..+..+.+
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-------------------- 395 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-------------------- 395 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence 999999887766665443223478999999999999999999999999987655444433
Q ss_pred ccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEe
Q 001363 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 762 (1092)
Q Consensus 683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~ 762 (1092)
|.+.|.+++|+|+|+.|++++.||.+++|+
T Consensus 396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 555666777777777777777777777776
Q ss_pred ecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcC-CceeeEEecC
Q 001363 763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP 841 (1092)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-~~~~~~~~~~ 841 (1092)
..... +....+. ....+...+.+++|+|+++.+.. .+.+.+|+.. ++..+..+.+
T Consensus 426 ~~~~~---------------~~~~~~~-------~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~g 481 (524)
T 2j04_B 426 AARRL---------------LHGIKNS-------SATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDA 481 (524)
T ss_dssp SCSST---------------TTCC-------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------
T ss_pred chHhh---------------ccccccC-------ccceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecC
Confidence 43210 0000000 00002234678899999985532 2233344443 5677888999
Q ss_pred CCCCeEEEEEcCCCC---CEEEEEeCCCcEEEEEcCC
Q 001363 842 PSPTATSLAFNPHDN---NVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 842 ~~~~i~~l~~s~~d~---~~lasg~~dg~v~iwd~~~ 875 (1092)
|...|.+++|+| ++ .++|+|+.||.|+||++..
T Consensus 482 h~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 482 HGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 999999999999 64 5999999999999999874
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-32 Score=322.06 Aligned_cols=346 Identities=15% Similarity=0.198 Sum_probs=268.2
Q ss_pred EEEEEeeccccCCc-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001363 567 IKRTYQGLQLQHNS-VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1092)
....+.+|. .. +.++.+ +++++++|+.||+|++||+.+++.+..+..| ...|.+++|+|++ ++++++.||+
T Consensus 113 ~~~~l~~h~---~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--~~~V~~l~~~~~~-~l~s~s~dg~ 184 (464)
T 3v7d_B 113 QRTTLRGHM---TSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHGG-ILVSGSTDRT 184 (464)
T ss_dssp EEEEEECCS---SSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECSTT-EEEEEETTSC
T ss_pred ceEEEcCCC---CCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC--CcCEEEEEEcCCC-EEEEEeCCCC
Confidence 455777777 55 466555 5679999999999999999999999998865 4579999999988 9999999999
Q ss_pred EEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccc
Q 001363 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1092)
Q Consensus 646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~ 725 (1092)
|++||+.+++.+..+.+|...|.++++.+ .++++.+++++.|+.+++|++..........
T Consensus 185 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--------------------~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 244 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVE--------------------YKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEEE--------------------SSSCEEEEEEETTSCEEEEECCCCCCC----
T ss_pred EEEEECCCCcEEEEECCCCCccEEEEEec--------------------CCCCCEEEEEcCCCcEEEeeCCCCccccccc
Confidence 99999999988888888888887777763 2456677777777777777765322111000
Q ss_pred cccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001363 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805 (1092)
Q Consensus 726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v 805 (1092)
. ......+.+.+++. . .....+. +|...+
T Consensus 245 ~-------~~~~~~~~~~~~~~-----------------------------------------~-~~~~~~~--~~~~~v 273 (464)
T 3v7d_B 245 E-------EHDYPLVFHTPEEN-----------------------------------------P-YFVGVLR--GHMASV 273 (464)
T ss_dssp ---------CCSSEEESCGGGC-----------------------------------------T-TEEEEEC--CCSSCE
T ss_pred c-------cCCcceEeeccCCC-----------------------------------------e-EEEEEcc--CccceE
Confidence 0 00000001111100 0 0011111 366777
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc
Q 001363 806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
.++ +++++++++++ |+.|++||+.+++.+..+.+|...|.+++|+| +++++++|+.||.|++||+.+++++..+.+
T Consensus 274 ~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 350 (464)
T 3v7d_B 274 RTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQG 350 (464)
T ss_dssp EEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence 665 68899999998 79999999999999999999999999999999 899999999999999999999999999999
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEc
Q 001363 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~ 964 (1092)
|...|.+++|+ +++|++++.||.|++||+.++.... ..... ..+..++|++++++++++.|+.|++||+
T Consensus 351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~l~~~~dg~i~iwd~ 419 (464)
T 3v7d_B 351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF----SYHHT-----NLSAITTFYVSDNILVSGSENQFNIYNL 419 (464)
T ss_dssp CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE----EEECT-----TCCCEEEEEECSSEEEEEETTEEEEEET
T ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee----eecCC-----CCccEEEEEeCCCEEEEecCCeEEEEEC
Confidence 99999999997 5799999999999999999865322 11111 2477899999999999988999999999
Q ss_pred CCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001363 965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus 965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd 1006 (1092)
.+++.+.....+|...|.+++|+ ++.++++++.||.+.+|-
T Consensus 420 ~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 420 RSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp TTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 99999988778899999999997 445555666777665554
No 65
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1e-32 Score=307.78 Aligned_cols=299 Identities=21% Similarity=0.304 Sum_probs=250.6
Q ss_pred ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCcc--cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001363 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
|.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~ 111 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLR 111 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccce
Confidence 8899999999999997 689999999999999999876543 23446789999999999999999 899999999999
Q ss_pred EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCC--EEE
Q 001363 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGR--RLF 545 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~--~l~ 545 (1092)
+|+...+........+...+..+.+.+ ++.+|++++.|+.+++||........ ....+...+..++|++++. .++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred EEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 999999999988888888888888754 56799999999999999987655433 4556778899999998764 566
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCC
Q 001363 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
+++. ++.|++||..+++.+..+.+|. ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+
T Consensus 190 s~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v 259 (340)
T 4aow_A 190 SCGW----DKLVKVWNLANCKLKTNHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---DII 259 (340)
T ss_dssp EEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS---SCE
T ss_pred EEcC----CCEEEEEECCCCceeeEecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC---ceE
Confidence 6665 6679999999999999999888 89999999999999999999999999999999999888765 358
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001363 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
.+++|+|++.++ +++.|+.|++||+.++..+..+.....
T Consensus 260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------------------------------- 298 (340)
T 4aow_A 260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVI---------------------------------------- 298 (340)
T ss_dssp EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------------------------------------
T ss_pred EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccce----------------------------------------
Confidence 999999987655 556789999999987765554432110
Q ss_pred cccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCC
Q 001363 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 766 (1092)
Q Consensus 706 ~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~ 766 (1092)
......|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus 299 ---------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 299 ---------------------STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp --------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ---------------------eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 0011237788999999999999999999999999998754
No 66
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-34 Score=328.11 Aligned_cols=275 Identities=12% Similarity=0.179 Sum_probs=212.8
Q ss_pred CCcceeeec-ccCCCCceEEeecC-CCceEEEEEcCCCcEEEEecCC---CCeeEEeeeeeeecccccceeeEeeecCCC
Q 001363 322 FPKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1092)
Q Consensus 322 ~p~~~~~~l-~~h~~~V~~v~~sp-dg~~llasg~~dg~i~iwd~~~---~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~ 396 (1092)
.....+..+ .+|.+.|++++|+| +|+ +||+|+.||+|+|||+.+ +..... ....+|.
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~ 111 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCS 111 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECS
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCC
Confidence 345677778 89999999999999 998 799999999999999977 432210 0011499
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEcc---CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~---~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 473 (1092)
..|.+++|+|++++|++|+.|+.|++||+. +++... .+.+| .+..+.|+|++
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~-------------------- 166 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG-------------------- 166 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS--------------------
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc--------------------
Confidence 999999999999999999999999999995 554333 34444 67777777743
Q ss_pred CCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCceEEEEEccCCCEEEEEecCC
Q 001363 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
+...+.++.+...+++.+|++++.||.|++||+++.+....+.. |...|.+++|+|++++|++++.
T Consensus 167 ----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-- 234 (437)
T 3gre_A 167 ----------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-- 234 (437)
T ss_dssp ----------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET--
T ss_pred ----------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC--
Confidence 22334444444466788999999999999999999998888877 6789999999999999999987
Q ss_pred CCceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcC----CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC-----
Q 001363 552 EGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----- 621 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~----~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----- 621 (1092)
++.|++||+++++.+..+. .+. ..|.+++|+| ++.++++++.||.|++||+.+++.+..+..+..
T Consensus 235 --dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 309 (437)
T 3gre_A 235 --RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME 309 (437)
T ss_dssp --TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG
T ss_pred --CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc
Confidence 5679999999999988886 444 6899996654 577999999999999999999999988875532
Q ss_pred -------------------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee
Q 001363 622 -------------------LPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 622 -------------------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
...|.+++|+ ++++|++++.|+.|++||+.+++..
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 310 HFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp GGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred eecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 2235555666 4556666666666666666554333
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.5e-34 Score=321.06 Aligned_cols=295 Identities=16% Similarity=0.218 Sum_probs=247.6
Q ss_pred eecccCCCCceEEeecCC---CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 328 QTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spd---g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..+.+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|.+++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~ 77 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAW 77 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEe
Confidence 455699999999999984 44355666666799999999887664311 1113347889999999
Q ss_pred CCC----CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 405 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 405 spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
+|+ |++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++||+.+++.+.
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVA 152 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEE
Confidence 999 6799999999999999999987554 6779999999999999 788 89999999999999999999999
Q ss_pred EE---ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe----------------------------cCC
Q 001363 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----------------------------DAP 528 (1092)
Q Consensus 480 ~~---~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------------------~~~ 528 (1092)
.+ .+|...|.+++|++ ++.+|++++.||.|++||+++.+....+ ..+
T Consensus 153 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp EECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred EecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 88 68999999999965 6689999999999999999876543322 237
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE--------------EEEEeeccccCCceEEEEEcCC--CCE
Q 001363 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQ 592 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~--~~~ 592 (1092)
...|.+++|+ ++++++++. ++.|++||+.++.. +..+.+|. ..|.+++|+|+ +++
T Consensus 231 ~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 231 RNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKM 301 (366)
T ss_dssp SSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSE
T ss_pred cceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcE
Confidence 7889999998 778888875 67799999987743 66777766 78999999999 999
Q ss_pred EEEEeCCCcEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 593 ILAAGDDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
+++++.||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999875 44466666545679999999999999999999999999975
No 68
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.4e-33 Score=312.99 Aligned_cols=203 Identities=12% Similarity=0.119 Sum_probs=172.1
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce
Q 001363 801 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
+...+.+++|||||+++++++ |++|+|||+.+++.+..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556688999999999988765 6899999999999998886 778899999999 99999999855 56777777776
Q ss_pred eeE--eeccccCCeEEEEEcCCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEE
Q 001363 878 VIS--KLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 878 ~~~--~l~~h~~~V~~l~~spdg~~l~s~s~Dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 951 (1092)
.+. ...+|...|.+++|+||++++++++.|+ .+++|++........ ......++.. .|.+++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~---~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL-RSKQVTNRFK---GITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE-EEEEEESSCS---CEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce-eeeeecCCCC---CeEeEEECCCCCce
Confidence 543 4456999999999999999999999887 688899887553322 2223334443 69999999999999
Q ss_pred EE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001363 952 LL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 952 a~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
|+ +.|++|+|||+.+++++..+..+|...|++++|||||++|||||.|++|+||+++..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 578999999999999999888899999999999999999999999999999999754
No 69
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.7e-34 Score=331.46 Aligned_cols=303 Identities=17% Similarity=0.195 Sum_probs=238.8
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
......+|...|+|++|+|.+..+||+|+.||+|+|||+.+++...... +.+|.+.|++|+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----------------~~gH~~~V~~l~f~ 173 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----------------GIGAGGSITGLKFN 173 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----------------CCSSSCCCCEEEEC
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----------------ccCCCCCEEEEEEe
Confidence 3456678999999999999654489999999999999999886553311 56899999999999
Q ss_pred C-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001363 406 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 406 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
| ++++|++|+.|++|++||++++. +........+...+.+++|+|+++ +|++|+.||.|++||++ ++.+..+.+|
T Consensus 174 p~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h 249 (435)
T 4e54_B 174 PLNTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMH 249 (435)
T ss_dssp SSCTTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCC
T ss_pred CCCCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecc
Confidence 8 78999999999999999998753 222212223445688999999999 89999999999999975 5677888999
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd 561 (1092)
...|.+++|++.. ..++++++.|+.|++||++...... ....|...|.+++|+|+|++|++++. ++.|++||
T Consensus 250 ~~~v~~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd 324 (435)
T 4e54_B 250 KKKVTHVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYS 324 (435)
T ss_dssp SSCEEEEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEE
T ss_pred cceEEeeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEE
Confidence 9999999997653 3588999999999999998766543 33557789999999999999999986 66799999
Q ss_pred CCCCeEEEEEeeccccC---CceEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCceEEEEeCCCCCCCCc
Q 001363 562 ESEGAIKRTYQGLQLQH---NSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1092)
Q Consensus 562 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1092)
..++.....+..|.... ..+..+.|+|++..+++++ .++.|++||..+++.+..+..+. ...|.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~ 403 (435)
T 4e54_B 325 ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGIS 403 (435)
T ss_dssp SSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCC
T ss_pred CCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEE
Confidence 99998887776654111 1233456777777776654 34679999999999988875433 34577
Q ss_pred eE-EEccCCCEEEEEeCCCeEEEEECCCCce
Q 001363 627 RI-CFNKNGTLLAVIANENRIKILETPESNS 656 (1092)
Q Consensus 627 ~v-~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 656 (1092)
++ +|+|+|++|++|+ |+.|+||++.+++.
T Consensus 404 s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 404 SLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 76 6999999999876 78999999988754
No 70
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=321.54 Aligned_cols=348 Identities=11% Similarity=0.123 Sum_probs=242.8
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeC-----------CCCC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGL 622 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~ 622 (1092)
..+++|+...++....+.+|. ..|.+++|+| +++++++++.||.|++||+.++.....+.. ..+.
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred CcceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 346778888788888888877 9999999999 999999999999999999998765444321 1244
Q ss_pred CCCceEEEcc-CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001363 623 PENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 623 ~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
..|.+++|+| ++.++++++.||.|++|++.+++....+.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------------------------- 139 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---------------------------------------- 139 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----------------------------------------
Confidence 5789999999 77899999999999999987653322111
Q ss_pred eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001363 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 781 (1092)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEec---CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC
Q 001363 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857 (1092)
Q Consensus 782 ~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~---dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 857 (1092)
+...+.++++++ ++.++++++ ++.|++||+.+++.+..+..|...|++++|+| ++.
T Consensus 140 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 199 (408)
T 4a11_B 140 -------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYD 199 (408)
T ss_dssp -------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCT
T ss_pred -------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCC
Confidence 222334444544 445777776 68999999999999999999999999999999 666
Q ss_pred -EEEEEeCCCcEEEEEcCCce-eeEee---------------ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 001363 858 -VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 920 (1092)
Q Consensus 858 -~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~ 920 (1092)
++++|+.||.|++||+.++. .+..+ .+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 69999999999999998765 33433 57999999999999999999999999999999998663
Q ss_pred eeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCC
Q 001363 921 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg 1000 (1092)
.............. ...........+.+++++.++.|++||+.+++.+.. +.+|...|++++|+|||++|++++.||
T Consensus 280 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg 356 (408)
T 4a11_B 280 TLVNYGKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDC 356 (408)
T ss_dssp CCCCCCCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred ceeccccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCC
Confidence 32111111111111 123334445556666668999999999999999887 568999999999999999999999999
Q ss_pred cEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1001 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1001 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
.|++||+.+++.+....... ....+.|.....+.+.+.++.+++|+.+
T Consensus 357 ~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 357 NILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CEEEEEECC----------------------------------------------------
T ss_pred eEEEEeCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCc
Confidence 99999999998775443111 1122333345677788899999999875
No 71
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.4e-33 Score=314.30 Aligned_cols=291 Identities=12% Similarity=0.073 Sum_probs=246.5
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCC--eeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+..|.+.|++++|+|+|+ +|++|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD 63 (372)
T ss_dssp EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence 456889999999999998 68999999999999999886 3332 6689999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce---eEEE-ec
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSF-EG 483 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~-~~ 483 (1092)
+++|++++.|+.|++||+.+++... ...+..|...|.+++|+|+++ +|++++.|+.|++||+.+++. ...+ .+
T Consensus 64 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 64 SNRIVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp TTEEEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence 9999999999999999998875333 224567999999999999999 899999999999999998873 3333 67
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcC------------------CCCceEEecCCCCceEEEEEccCCCEEE
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
|...|.+++|++ ++.+|++++.||.|++||+. .......+..+...+.+++|+|++++|+
T Consensus 141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 899999999966 66899999999999999954 4566677778888999999999999999
Q ss_pred EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceE----------
Q 001363 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL---------- 613 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~---------- 613 (1092)
+++. ++.|++||..+++.+..+..+. ..+.+++|+|++.+++++ .|+.|++|++.+ +...
T Consensus 219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9986 6679999999999999999877 899999999999877777 999999999987 4311
Q ss_pred ----------------------------EEEeCCCCCCCCceEEEc-cCC---CEEEEEeCCCeEEEEECCCC
Q 001363 614 ----------------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES 654 (1092)
Q Consensus 614 ----------------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iw~~~~~ 654 (1092)
..+. .++...|.+++|. ++| ++|++++.||.|++|++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred chhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1111 2445679999866 566 99999999999999998754
No 72
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-33 Score=324.64 Aligned_cols=302 Identities=12% Similarity=0.120 Sum_probs=231.8
Q ss_pred EEEeeccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEEeCCCeE
Q 001363 569 RTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRI 646 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i 646 (1092)
....+|. ..|++++|+|. ++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+|
T Consensus 113 ~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 113 QKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp CEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred ccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 3445555 78999999994 5789999999999999999887766666666667899999998 78999999999999
Q ss_pred EEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccc
Q 001363 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1092)
Q Consensus 647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~ 726 (1092)
++||+.++.... +
T Consensus 190 ~iwd~~~~~~~~-~------------------------------------------------------------------ 202 (435)
T 4e54_B 190 RLQDFKGNILRV-F------------------------------------------------------------------ 202 (435)
T ss_dssp EEEETTSCEEEE-E------------------------------------------------------------------
T ss_pred EEeeccCCceeE-E------------------------------------------------------------------
Confidence 999976431100 0
Q ss_pred ccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001363 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~ 806 (1092)
... + .+...+.
T Consensus 203 ---------------~~~----------~--------------------------------------------~~~~~~~ 213 (435)
T 4e54_B 203 ---------------ASS----------D--------------------------------------------TINIWFC 213 (435)
T ss_dssp ---------------ECC----------S--------------------------------------------SCSCCCC
T ss_pred ---------------ecc----------C--------------------------------------------CCCccEE
Confidence 000 0 1334567
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe---e
Q 001363 807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK---L 882 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~---l 882 (1092)
+++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..++++|+.|+.|+|||+.+++.... .
T Consensus 214 ~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~ 292 (435)
T 4e54_B 214 SLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292 (435)
T ss_dssp CEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC
T ss_pred EEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEe
Confidence 889999999999998 7999999986 4667788899999999999995556899999999999999988765433 3
Q ss_pred ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--------
Q 001363 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-------- 954 (1092)
Q Consensus 883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-------- 954 (1092)
.+|...|++++|+|||++|++++.||.|+|||+.+++.............. ...+..+.|+|++..++++
T Consensus 293 ~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~ 370 (435)
T 4e54_B 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ--HLTPIKAAWHPRYNLIVVGRYPDPNFK 370 (435)
T ss_dssp CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS--SSCCCBCEECSSSSCEEEECCCCTTSC
T ss_pred eeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc--cceeEEEEEcCCCCEEEEEEcCCCCeE
Confidence 579999999999999999999999999999999987644322111111000 0123345666666665553
Q ss_pred -----eCCcEEEEEcCCceeeeeeccCCCCCEEEE-EEecCCCEEEEEECCCcEEEEEcCCCceE
Q 001363 955 -----HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus 955 -----~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l-~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~ 1013 (1092)
.++.|++||..+++.+..+..+|...|.++ +|+|||++|++|+ |++|+||++++|+..
T Consensus 371 ~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 371 SCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 235799999999999998888899999987 6999999999875 889999999998754
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.9e-33 Score=314.65 Aligned_cols=307 Identities=16% Similarity=0.168 Sum_probs=244.5
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCE
Q 001363 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL 636 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 636 (1092)
+|+.........+.+|. ..|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus 57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 44556667777888877 899999999999 999999999999999999999888887655667899999999 7899
Q ss_pred EEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
|++++.|+.|++||+.+. ....+..
T Consensus 134 l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------------------ 158 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGS-VIQVFAK------------------------------------------------------ 158 (383)
T ss_dssp EEEEETTTEEEEEETTSC-EEEEEEC------------------------------------------------------
T ss_pred EEEEeCCCEEEEEECCCC-ceEEEec------------------------------------------------------
Confidence 999999999999998732 1100000
Q ss_pred cccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecC
Q 001363 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 796 (1092)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 796 (1092)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-EEEEEeCCCcEEEEEcC
Q 001363 797 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNAR 874 (1092)
Q Consensus 797 ~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~dg~v~iwd~~ 874 (1092)
...+...|.+++|+|+++++++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.|+.|++||+.
T Consensus 159 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 159 -TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp -CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGG
T ss_pred -cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCC
Confidence 001456788899999999999888 689999998 5778888999999999999999 777 99999999999999999
Q ss_pred C----ceeeEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeec--CCCCcC-------CCCCce
Q 001363 875 S----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSET 940 (1092)
Q Consensus 875 ~----~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~v~ 940 (1092)
+ +.++..+ +|...|++++|+| ++++|++++.|+.|++||+.+++......... ...+.. ....+.
T Consensus 236 ~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 236 NIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI 314 (383)
T ss_dssp GCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred CCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence 8 5666666 6999999999999 99999999999999999998866433211111 001111 012344
Q ss_pred EEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccC-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001363 941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 941 ~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
.++|+|||++ ..+.|+.|++||+.+++++..+... |...+..++|+|||++|++++ ||.|++||+++
T Consensus 315 ~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 315 VAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 4666666666 3357899999999999998875532 577888889999999999997 99999999875
No 74
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-32 Score=306.97 Aligned_cols=289 Identities=12% Similarity=0.146 Sum_probs=259.6
Q ss_pred eeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 390 ~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
..+.+|...|++++|+|+|++|++++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i 100 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL 100 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence 3488999999999999999999999999999999999986554 7889999999999999999 8999999999999
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC-----CeEEEEEcCCCCc-----------eEEecCCCC--c
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL--G 531 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~-----------~~~~~~~~~--~ 531 (1092)
||+.+++.+..+. +...|.+++|++ ++.++++++.+ |.|++||+..... ...+..+.. .
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 9999999999988 889999999965 67899999999 9999999976642 223344444 8
Q ss_pred eEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001363 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
+.+++|+|+++++++++. ++.|++||+.+ ++.+..+..|. ..|.+++|+|+++++++++.|+.|++||+.++
T Consensus 178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 999999999999999876 66799999998 78888888877 89999999999999999999999999999999
Q ss_pred ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC--------------eEEEEECCCCceeeecccccCceeeeeecCCC
Q 001363 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1092)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 676 (1092)
+.+..+... ..+..++|+|+++++++++.++ .+++|+..+++.+..+.+|...|.+++++
T Consensus 251 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s--- 324 (369)
T 3zwl_B 251 QVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS--- 324 (369)
T ss_dssp CEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---
T ss_pred ceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---
Confidence 999888743 4589999999999999999988 89999999999999999999999999996
Q ss_pred ccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001363 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~ 718 (1092)
|+++++++++.|+.+++|++...
T Consensus 325 -------------------~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 325 -------------------PQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp -------------------TTSSEEEEEETTSEEEEEEECHH
T ss_pred -------------------CCCCEEEEEcCCCeEEEEECccc
Confidence 78899999999999999998743
No 75
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.1e-33 Score=312.35 Aligned_cols=299 Identities=11% Similarity=0.120 Sum_probs=231.5
Q ss_pred CCceEEeecCCCceEEEEEcCC-------CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d-------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
-+|++++|+|||+ +||+|+.| +.|+||++..+.......+ .......+.+|...|.+++++
T Consensus 15 ~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~---------~~~~~~~l~~~~~~v~s~~~~-- 82 (365)
T 4h5i_A 15 YPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF---------HILSEFALEDNDDSPTAIDAS-- 82 (365)
T ss_dssp SCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE---------EEEEEEECCTTSCCCCEEEEE--
T ss_pred CCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeee---------eeeeEEEccCCCCceEEEEeC--
Confidence 3899999999998 78888653 3599999987654321111 111223377899999888765
Q ss_pred CCEEEEE-----------eCCCEEEEEEccCCCcccce-EE-----EcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 408 GSLLGVA-----------YSKHIVQLYAYHGGSDARQQ-LE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 408 g~~las~-----------~~d~~i~iwd~~~~~~~~~~-~~-----~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
++.+++| +.|+.+++|++.++...... .. ...+...+.+++|||||+.+.+++++.|++|+||
T Consensus 83 ~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iw 162 (365)
T 4h5i_A 83 KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRII 162 (365)
T ss_dssp TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEE
T ss_pred CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEe
Confidence 5566665 35678999999876432211 11 1234456899999999996556677789999999
Q ss_pred ECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEEEEccCCCEEEEEe
Q 001363 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
|+++++++..+. |...|.+++|+| ||.++++++.+ .+++|+..++..... ...+...+.+++|+|+++++++++
T Consensus 163 d~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s 238 (365)
T 4h5i_A 163 DPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAAS 238 (365)
T ss_dssp ETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE
T ss_pred ECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe
Confidence 999999999886 778899999955 77899998855 556666666665443 345667899999999999999998
Q ss_pred cCCCCceeEEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-eCCCCCC
Q 001363 549 TSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLP 623 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~ 623 (1092)
.++.....++.|+...+.. ...+.+|. ..|.+++|+|++++|++|+.|++|+|||+.+++++..+ ..| ..
T Consensus 239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~ 313 (365)
T 4h5i_A 239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SF 313 (365)
T ss_dssp ESSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SS
T ss_pred cCCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cC
Confidence 8766666889999877654 23455555 88999999999999999999999999999999998876 444 45
Q ss_pred CCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001363 624 ENPRICFNKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
.|++++|+|||++||+++.|++|+||+++..
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 7999999999999999999999999999754
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-32 Score=312.34 Aligned_cols=299 Identities=16% Similarity=0.231 Sum_probs=247.5
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
....+|.+.+.+.++++++.. +++++.|+.|+|||+.+++..... ...|...|.+++|+|+
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~ 145 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHD 145 (401)
T ss_dssp EECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTT
T ss_pred eeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCC
Confidence 344588777665555444453 566778999999999999876542 2238899999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC-CCceeEEEecCCc
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGA 486 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~ 486 (1092)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ .+++++.|+.|++||+. .+..+..+.+|..
T Consensus 146 ~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 218 (401)
T 4aez_A 146 GSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218 (401)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred CCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence 9999999999999999999986555 678999999999994 45 79999999999999999 5677888999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
.|.+++|++ ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||..+++
T Consensus 219 ~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 219 EVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGA 295 (401)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCC
T ss_pred CeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCC
Confidence 999999966 6789999999999999999999888889899999999999998866555432 1237789999999999
Q ss_pred EEEEEeeccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
.+..+.. . ..+.+++|+|+++.+++++ .||.|++||+.++.........++...|.+++|+|++++|++++.||
T Consensus 296 ~~~~~~~-~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 296 RVNTVDA-G---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp EEEEEEC-S---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred EEEEEeC-C---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 9888864 3 5899999999999999954 89999999999977766654444456799999999999999999999
Q ss_pred eEEEEECCCCceeee
Q 001363 645 RIKILETPESNSVDA 659 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~ 659 (1092)
.|++|++.+++.+..
T Consensus 372 ~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 372 NLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEEEECCC------
T ss_pred cEEEEECCCCccccc
Confidence 999999998866544
No 77
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-32 Score=298.65 Aligned_cols=252 Identities=13% Similarity=0.167 Sum_probs=211.8
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC--CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
+..+.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+.. +.+|.++|.+++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~ 61 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDW 61 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEE
T ss_pred ceeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEe
Confidence 356889999999999999998 6999999999999999754 33332 7799999999999
Q ss_pred CCC--CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCCc--ee
Q 001363 405 SPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RT 478 (1092)
Q Consensus 405 spd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~--~~ 478 (1092)
+|+ |++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++. ..
T Consensus 62 s~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 62 AHPKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp CCGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred cCCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceee
Confidence 874 899999999999999999987422 22357789999999999998 77 89999999999999998764 24
Q ss_pred EEEecCCcCeEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEccCC--
Q 001363 479 YSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG-- 541 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~dg-- 541 (1092)
..+.+|...|.+++|+|.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence 6778999999999998752 35799999999999999998766 345678899999999999995
Q ss_pred -CEEEEEecCCCCceeEEEEeCCCCe---EEEEE--eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001363 542 -RRLFSCGTSKEGESFLVEWNESEGA---IKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 542 -~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++|++++. ++.|++||..++. ....+ ..+ ...|.+++|+|++++|++++.|+.|++|+..
T Consensus 219 ~~~las~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 219 RSYMASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKF---PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCC---SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceEEEEEEC----CCcEEEEEeCCCCCccceeeeecccC---CCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 78999886 6679999987643 11222 233 3789999999999999999999999999976
No 78
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-34 Score=323.51 Aligned_cols=289 Identities=12% Similarity=0.063 Sum_probs=226.6
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCC--CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
++.|.+.|++++|+|+|+ +||+|+.|+.|+|||+.++ +.+.. +.+|...|.+++|+|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPK 66 (377)
T ss_dssp EEECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTT
T ss_pred EecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCC
Confidence 345667999999999998 7899999999999999987 33332 6789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc---eeEEEec-
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG- 483 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~---~~~~~~~- 483 (1092)
+++|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+++++ ....+.+
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 99999999999999999999874444556788999999999999999 79999999999999999887 4778888
Q ss_pred CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC------------------CCceEEecCCCCceEEEEEccCCCEEE
Q 001363 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS------------------LGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
|...|.+++|++ ++.+|++++.||.|++||+.. ......+ .|...|.+++|+|++++|+
T Consensus 145 h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 145 LRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp CCSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred cCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 999999999965 668999999999999999853 2233344 7788999999999999999
Q ss_pred EEecCCCCceeEEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------
Q 001363 546 SCGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------- 611 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------- 611 (1092)
+++. ++.|++||+.+++. +..+.+|. ..|.+++|+|+++++++++.++.+ +|+.....
T Consensus 222 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T 3dwl_C 222 YAGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG 293 (377)
T ss_dssp EEET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred EEeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence 9986 66799999999987 77788877 899999999999998888776665 66654211
Q ss_pred -----------------------------eEEEEeC-----------CCCCCCCceEEEccC-CC---EEEEEeCCCeEE
Q 001363 612 -----------------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIK 647 (1092)
Q Consensus 612 -----------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~ 647 (1092)
....... ..+...|.++++.+. +. .+++++.||.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 0000000 014456888886653 33 699999999999
Q ss_pred EEEC
Q 001363 648 ILET 651 (1092)
Q Consensus 648 iw~~ 651 (1092)
+||+
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 79
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.9e-32 Score=309.00 Aligned_cols=289 Identities=16% Similarity=0.256 Sum_probs=244.0
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
..+.|+||+++ +||+|. |++|+|||+.+|+...... +.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999875 678875 8999999999998776422 557889999999999999999999
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCcCeEEEeec
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~i~~~ 494 (1092)
.|++|+|||+.+++.+. .+.+|...+.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987655 788999999988875 45 7999999999999998864 5567889999999999985
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEE-EEEecCCCCceeEEEEeCCCCeEEE
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l-~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
+ ++.++++++.||.+++|+....+. ......+...|.+++|+|++..+ ++++. ..++.|++||+.+++...
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 5 668999999999999999987653 34667788899999999977654 44433 337889999999999998
Q ss_pred EEeeccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
.+..+. .+.++.|+|+++.+++++ .|+.|++||+.+++++..+..|. ..|.+++|+|+|++|++|+.|++|+
T Consensus 316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEE
T ss_pred eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEE
Confidence 887654 789999999999998865 78999999999999999998664 5799999999999999999999999
Q ss_pred EEECCCCceeeecc
Q 001363 648 ILETPESNSVDAAG 661 (1092)
Q Consensus 648 iw~~~~~~~~~~~~ 661 (1092)
+|++.+..+.....
T Consensus 390 iWdv~~~~~~~~~~ 403 (420)
T 4gga_A 390 LWRCFELDPARRRE 403 (420)
T ss_dssp EECCSCSSCC----
T ss_pred EEECCCCCccchhh
Confidence 99998765544443
No 80
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-33 Score=311.55 Aligned_cols=317 Identities=11% Similarity=0.022 Sum_probs=248.0
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
+.-+..|.+|+|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 12 ~~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg-- 64 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE-- 64 (588)
T ss_dssp CCCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC--
T ss_pred hHhhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC--
Confidence 34467999999999998 799999999999 7555532 45799999999999999
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc----
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA---- 486 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---- 486 (1092)
.++.+.+|+.+....+. + .|...|.+++|||||+ .|++++.||.|++||.++ ++..+. |..
T Consensus 65 -----~~~~~~~~~~~~~~~~~----~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 65 -----FENKLDFELAQQNGLLN----S-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp -----CCCTTTTSCCCSSCSST----T-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred -----CcceEEEEeCCCceEee----c-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 45555555543322221 2 5688999999999999 799999999999999544 667777 665
Q ss_pred -CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-------eEEe----cCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 487 -PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 487 -~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~----~~~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
.|.+++|+| ||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. +
T Consensus 130 ~sv~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D 201 (588)
T 2j04_A 130 RTYHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----N 201 (588)
T ss_dssp TCEEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----T
T ss_pred ccEEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----C
Confidence 499999955 789999999999999999998753 3444 5667899999999999 666665 6
Q ss_pred eeEEEEeCCCCeE---EEEEe-eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 555 SFLVEWNESEGAI---KRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 555 ~~i~iwd~~~~~~---~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
+.|++||+.++.. .+++. +|. ..|.+++|+ ++.+++++ +++|++||+.+++....... +...+..++|
T Consensus 202 ~tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~ 273 (588)
T 2j04_A 202 NSVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPL 273 (588)
T ss_dssp CCEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEE
T ss_pred CeEEEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEe
Confidence 6799999988874 34553 554 789999999 58888887 69999999998877444433 4567999999
Q ss_pred --ccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccc
Q 001363 631 --NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1092)
Q Consensus 631 --s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1092)
+|++..+++++.||+ ++|.... +++ +||+..+++. |+
T Consensus 274 ~~s~d~~~La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~ 312 (588)
T 2j04_A 274 NHEKESTILLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EK 312 (588)
T ss_dssp TTCSSCEEEEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HH
T ss_pred eeCCCCCEEEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CC
Confidence 999999999999999 9999771 223 4677777775 89
Q ss_pred ccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeec
Q 001363 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 754 (1092)
Q Consensus 709 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 754 (1092)
++++|+...+.. . ...+...|.+++|+|||+.+++++.
T Consensus 313 ~v~lW~~~g~~l------~--~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 313 KFKKWSTIWNEF------N--NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHTTTTTTSS------S--SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEEECCCCce------e--eeccceEEEEEEECCCCCEEEEEEe
Confidence 999999753321 1 1123567999999999998887765
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-31 Score=329.52 Aligned_cols=212 Identities=18% Similarity=0.295 Sum_probs=184.4
Q ss_pred EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-----ceeEEEecCCcCeEEEeecccCCccEEEEEecCC
Q 001363 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 509 (1092)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg 509 (1092)
..+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++ .....+.+|...|.+++|++ ++.+|++|+.||
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~Dg 452 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWDG 452 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETTS
T ss_pred hhcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCCC
Confidence 357899999999999998644 8999999999999998763 45678899999999999965 678999999999
Q ss_pred eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001363 510 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 510 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
+|++||+.++.....+..|...|.+++|+|++++|++++. ++.|++||...............|...|.+++|+|+
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 9999999999888899999999999999999999999987 667999998766554444333334588999999998
Q ss_pred C--CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001363 590 K--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 590 ~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
+ ..+++++.|++|++||+.+++....+..|. ..|.+++|+|++++|++++.||.|++||+.+++
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6 579999999999999999999998887664 469999999999999999999999999988664
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.2e-32 Score=311.00 Aligned_cols=296 Identities=16% Similarity=0.151 Sum_probs=250.2
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC------ceEEecCCCCceEEEEEccC----C---CEE
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAPGLGCTRMAYSAN----G---RRL 544 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~i~~~~~s~d----g---~~l 544 (1092)
...+.+|...|++++|++ .+|++++.||.|++||+.... ....+..+...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456679999999999965 599999999999999999988 67788889999999999999 9 999
Q ss_pred EEEecCCCCceeEEEEeCCCCeE-----EEEEeecccc--CCceEEEEEc----CCCCE-EEEEeCCCcEEEEECCC---
Q 001363 545 FSCGTSKEGESFLVEWNESEGAI-----KRTYQGLQLQ--HNSVSVVHFD----TAKDQ-ILAAGDDHVIKIWDMNK--- 609 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~-----~~~~~~~~~~--~~~v~~~~~~----~~~~~-l~~~s~dg~i~iwd~~~--- 609 (1092)
++++. ++.|++||+.+++. ...+..|..+ ...|.+++|+ |++++ +++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99986 56699999998886 7788777322 3789999999 99999 99999999999999988
Q ss_pred ---CceEE-----EEeC-----CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCC
Q 001363 610 ---VQLLT-----TIDA-----GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1092)
Q Consensus 610 ---~~~~~-----~~~~-----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 676 (1092)
++.+. .+.. ..+...+.+++|+|++ ++++++.||.|++||+.+++.+..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------- 225 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES-------------- 225 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC--------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec--------------
Confidence 66555 5543 3334568999999999 999999999999999875432221110
Q ss_pred ccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCC
Q 001363 677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 756 (1092)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 756 (1092)
T Consensus 226 -------------------------------------------------------------------------------- 225 (397)
T 1sq9_A 226 -------------------------------------------------------------------------------- 225 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCC---CCCeeEEEEecCCCEEEEEe-C---CeEEEEE
Q 001363 757 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS---QEAVPCFALSKNDAYLFSAS-G---GVISLYI 829 (1092)
Q Consensus 757 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~---~~~v~~~~~s~dg~~l~~~s-d---g~i~iwd 829 (1092)
. .+| ...|.+++|+|++++|++++ | +.|++||
T Consensus 226 ---------------------------------------~--~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d 264 (397)
T 1sq9_A 226 ---------------------------------------Q--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE 264 (397)
T ss_dssp ---------------------------------------C--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------c--ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEE
Confidence 0 014 66788999999999999887 6 8999999
Q ss_pred cCCceeeEEecC-------------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec------cc-----
Q 001363 830 VMTFKTILTIMP-------------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------GH----- 885 (1092)
Q Consensus 830 ~~~~~~~~~~~~-------------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h----- 885 (1092)
+.+++.+..+.. |...|.+++|+| ++++|++++.||.|++||+.+++.+..+. +|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
T 1sq9_A 265 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL 343 (397)
T ss_dssp TTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred CCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh
Confidence 999999999988 999999999999 89999999999999999999999999999 88
Q ss_pred ----------cCCeEEEEEcCCC----------CEEEEEeCCCcEEEEEcCCC
Q 001363 886 ----------SKRVTGLVFSDAL----------NILVSSGGDAQIFVWDVDGW 918 (1092)
Q Consensus 886 ----------~~~V~~l~~spdg----------~~l~s~s~Dg~I~iwd~~~~ 918 (1092)
...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999999875
No 83
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.9e-32 Score=294.83 Aligned_cols=252 Identities=17% Similarity=0.299 Sum_probs=213.2
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v 469 (1092)
+.+|...|.+++|+|+|++||+|+.|++|+|||+.++.. ....++.+|.++|.+++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975421 223478899999999999864 77 8999999999999
Q ss_pred EECCCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccC-----
Q 001363 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN----- 540 (1092)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d----- 540 (1092)
||+.+++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999998865578999999999999999987642 4567788889999999997
Q ss_pred --------CCEEEEEecCCCCceeEEEEeCCCCe----EEEEEeeccccCCceEEEEEcCCC---CEEEEEeCCCcEEEE
Q 001363 541 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW 605 (1092)
Q Consensus 541 --------g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iw 605 (1092)
+++|++++. ++.|++||..+++ ....+.+|. ..|.+++|+|++ .+|++++.|++|++|
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 578999886 6679999998765 566777777 899999999984 789999999999999
Q ss_pred ECCCCc--e-EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 606 DMNKVQ--L-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 606 d~~~~~--~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
|+.++. . ...+....+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 998753 2 22332233445689999999999999999999999999763
No 84
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.6e-32 Score=308.67 Aligned_cols=347 Identities=14% Similarity=0.131 Sum_probs=246.8
Q ss_pred ceeeecccCCCCceEEeecC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.....+.+|.+.|++++|+| +++ +||+|+.||.|+|||+.+++.......... .........+|...|.+++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~ 106 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQ 106 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEE
T ss_pred cceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEE
Confidence 45677889999999999999 998 799999999999999999876653221100 0000001246999999999
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC---CCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
|+| ++.+|++++.|+.|++||+.+++... .+ .+...+.++.|++. +. ++++++.|+.|++||+.+++.+.
T Consensus 107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp ECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCE
T ss_pred EccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceee
Confidence 999 88899999999999999999986554 23 37778999999884 44 79999999999999999999999
Q ss_pred EEecCCcCeEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc-eEEe---------------cCCCCceEEEEEccCCC
Q 001363 480 SFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA-RVDY---------------DAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~-~~~~---------------~~~~~~i~~~~~s~dg~ 542 (1092)
.+.+|...|.+++|++. +. ++++++.||.|++||++.... ...+ ..+...|.+++|+|+++
T Consensus 181 ~~~~~~~~v~~~~~~~~--~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 181 ILQGHRQEILAVSWSPR--YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp EECCCCSCEEEEEECSS--CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eecCCCCcEEEEEECCC--CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 99999999999999764 44 699999999999999987652 2222 45677899999999999
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 001363 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1092)
++++++. ++.|++||+.+++....+.++.. ....+........+..+++++.++.|++||+.+++.+..+..+.
T Consensus 259 ~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 259 HLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp EEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred EEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 9999986 56699999999887655443321 01222222333445677788889999999999999999998664
Q ss_pred CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcc
Q 001363 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1092)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 700 (1092)
..|.+++|+|++++|++++.||.|++|++.+.+.+......... ..+. ......
T Consensus 335 --~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~~ 388 (408)
T 4a11_B 335 --KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN---------------------PAFEDA 388 (408)
T ss_dssp --SCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------
T ss_pred --CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc---------------------ccccee
Confidence 46999999999999999999999999999988766544322111 1111 123445
Q ss_pred ceeeccccccceeccc
Q 001363 701 EISVEAENKSEVEKPL 716 (1092)
Q Consensus 701 l~s~~~d~~i~lw~~~ 716 (1092)
..+.+.++.+++|+..
T Consensus 389 ~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 389 WSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------
T ss_pred ecccCccCceeecCCc
Confidence 5677788999999854
No 85
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=317.06 Aligned_cols=330 Identities=10% Similarity=0.037 Sum_probs=249.1
Q ss_pred CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
-..+|.+++|+|||+++++++. +++|+ |...++. +.+|. ..|.+++|+|+| .++.+.+|+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~~---l~gh~---~~v~~V~FsPdg-------~~~~~~~~~~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAKD---INCNS---KNLFHVKEFPLE-------FENKLDFELA 74 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCSC---CSSBG---GGTEEEEEECCC-------CCCTTTTSCC
T ss_pred hhccEEEEEECCCCCEEEEEcC----Cceee--cccccce---ecCCC---ccEEEEEECCCC-------CcceEEEEeC
Confidence 3468899999999999999986 67788 7555544 35766 899999999998 4555555554
Q ss_pred CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCc
Q 001363 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1092)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 687 (1092)
+. ...+.... ...|.+++|||+|.+||+++.||.+++|+... .+..+. |...+
T Consensus 75 ~~---~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~-------------------- 127 (588)
T 2j04_A 75 QQ---NGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL-------------------- 127 (588)
T ss_dssp CS---SCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS--------------------
T ss_pred CC---ceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc--------------------
Confidence 32 22222122 45799999999999999999999999999543 222221 11110
Q ss_pred eeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCC
Q 001363 688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767 (1092)
Q Consensus 688 ~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~ 767 (1092)
....+.+++|||||+.|++++.||+|++|++..+.
T Consensus 128 ---------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 128 ---------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp ---------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred ---------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 12358899999999999999999999999976531
Q ss_pred cCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee---eEEe-cCCC
Q 001363 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPPS 843 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~---~~~~-~~~~ 843 (1092)
... +++ ..+........+|...|.+++|+||| +++++.|+++++||+.+++. .+++ .+|.
T Consensus 163 l~~---------~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~ 226 (588)
T 2j04_A 163 ENT---------PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASR 226 (588)
T ss_dssp TTC---------CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred ccc---------ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence 100 000 00122222223588999999999999 55555689999999988774 3566 4788
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCCCcee
Q 001363 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGIQ 921 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~l~s~s~Dg~I~iwd~~~~~~~ 921 (1092)
..|.+++|+ ++.||+++ +++|++||+.+++......+|.+.|..++| +||+..|+++++||+ ++|..+.
T Consensus 227 ~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~---- 297 (588)
T 2j04_A 227 RKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE---- 297 (588)
T ss_dssp SCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS----
T ss_pred CcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc----
Confidence 899999998 37899887 699999999988874444489999999999 999999999999999 9999872
Q ss_pred eeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001363 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
++|+||+..++.. |+++++|+...+. +.. +.+ ...|.+++|||||+.+|+++
T Consensus 298 --------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~-~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 298 --------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNN-YET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp --------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSS-SCC-EEEEEEEEECTTSSEEEEEE
T ss_pred --------------------EEECCCceEEEEc-CCEEEEEECCCCc-eee-ecc-ceEEEEEEECCCCCEEEEEE
Confidence 5599999988875 9999999976444 332 333 77899999999999999886
No 86
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.6e-32 Score=304.85 Aligned_cols=290 Identities=12% Similarity=0.103 Sum_probs=247.7
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+..|..+|.+++|+|+|++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 45699999999999999999999999999999999875 113336789999999999999999 899999999999999
Q ss_pred CCCCceeEEE--ecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEEE
Q 001363 472 AVTGSRTYSF--EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 472 ~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
+.+++....+ ..|...|.+++|++ ++.+|++++.||.|++||++.... ......+...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 9998765444 67999999999965 668999999999999999998774 223356788999999999999999
Q ss_pred EEecCCCCceeEEEEeC------------------CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 546 SCGTSKEGESFLVEWNE------------------SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 546 ~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
+++. ++.|++||+ .+++.+..+.+|. ..+.+++|+|+++++++++.|+.|++||+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCC---CeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9986 566999994 4678888888777 89999999999999999999999999999
Q ss_pred CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC--Cce-----------------------------
Q 001363 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE--SNS----------------------------- 656 (1092)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~--~~~----------------------------- 656 (1092)
.+++.+..+..+. ..+.+++|+|++.+++++ .|+.|++|++.+ +..
T Consensus 232 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 232 DKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp GGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred CCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 9999999988663 468999999999988887 899999999987 321
Q ss_pred ----------eeecccccCceeeeeecCCCccccccccCCceeecCCCCCCC---ccceeeccccccceecccc
Q 001363 657 ----------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV---KPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 657 ----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---~~l~s~~~d~~i~lw~~~~ 717 (1092)
.....+|...|.++++. +++| +++++++.||.|++|++..
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVL---------------------SGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEE---------------------ESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccCccccccccccccCCcceeEEe---------------------cCCCcceeeEEEecCCCceEEEEecC
Confidence 11224788888888866 3566 8999999999999999864
No 87
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.2e-30 Score=287.81 Aligned_cols=282 Identities=16% Similarity=0.268 Sum_probs=236.9
Q ss_pred ceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001363 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1092)
Q Consensus 337 V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~ 416 (1092)
.++|+||+++ +||+|. |++|+|||+.+|+.+.... +.+|...|.+++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999987 578774 8999999999999876522 5578899999999999999999999
Q ss_pred CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCcCeEEEeecc
Q 001363 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~i~~~~ 495 (1092)
|++|++||+++++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+..++ ..+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999987655 67799988877655 455 7999999999999998876 45677889999999999854
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
++.++++++.||.|++||+.+.+. ......+...+..++++|++..++.... +..++.|++||...+......
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 668999999999999999987653 3455667778999999998776553322 133778999999988877665
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001363 572 QGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1092)
... ..+..+.|+|+++.+++++ .|+.|++||+.+++++..+..|. ..|.+++|+|+|++|++++.||+|+||
T Consensus 238 ~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 238 DAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp ECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 543 5799999999999988765 79999999999999999998664 579999999999999999999999999
Q ss_pred ECCCC
Q 001363 650 ETPES 654 (1092)
Q Consensus 650 ~~~~~ 654 (1092)
|+.+.
T Consensus 312 d~~~~ 316 (318)
T 4ggc_A 312 RCFEL 316 (318)
T ss_dssp CCSCC
T ss_pred ECCCC
Confidence 98754
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-32 Score=310.43 Aligned_cols=245 Identities=11% Similarity=0.136 Sum_probs=195.5
Q ss_pred ccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
+...|.+++|+|+++++++++.||.+++|++..... .....+. +|...|.+++|+|
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------~~~~~~~--~h~~~v~~~~~s~ 65 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------KHARTFS--DHDKIVTCVDWAP 65 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE----------------------EECCCBC--CCSSCEEEEEECT
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce----------------------EEEEEEe--cCCceEEEEEEeC
Confidence 456899999999999999999999999999864310 0111122 4899999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCce---eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce---eeEeecc-
Q 001363 813 NDAYLFSAS-GGVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---VISKLEG- 884 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---~~~~l~~- 884 (1092)
++++|++++ |+.|++||+.+++ ....+..|...|.+++|+| ++++|++|+.|+.|++||+.+++ ....+.+
T Consensus 66 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 999999998 7999999999877 6777888999999999999 89999999999999999999887 4778887
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee-------------eeeeeecCCCCcCCCCCceEEEEccCCCEE
Q 001363 885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-------------TCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 951 (1092)
|...|++++|+|++++|++++.|+.|++||+...+.. ...++... +|.. .|.+++|+|+|++|
T Consensus 145 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~v~~~~~sp~~~~l 220 (377)
T 3dwl_C 145 LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG---WVHAVGFSPSGNAL 220 (377)
T ss_dssp CCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS---SEEEEEECTTSSCE
T ss_pred cCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc---eEEEEEECCCCCEE
Confidence 9999999999999999999999999999999643211 12344444 4443 79999999999999
Q ss_pred EE-EeCCcEEEEEcCCcee----eeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 952 LL-VHETHLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 952 a~-~~d~~i~lwd~~~~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
++ +.|+.|++||+.+++. +.. +.+|...|.+++|+|||++|++++.|+.+ +|+..
T Consensus 221 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 221 AYAGHDSSVTIAYPSAPEQPPRALIT-VKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEETTTEEC-CEECSTTSCEEECCC-EECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEEeCCCcEEEEECCCCCCcceeeEe-ecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 98 5789999999999887 544 56799999999999999999988766655 67665
No 89
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=310.83 Aligned_cols=301 Identities=13% Similarity=0.199 Sum_probs=233.0
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC------------CcE
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG------------VSV 399 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~------------~~V 399 (1092)
.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ...-....+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCce
Confidence 3577999999999998 699999999999999998763110000 0000011266898 889
Q ss_pred EEEEECCCC--CEEEEEeCCCEEEEEEccCCCccc------------------------------------ceEE-Eccc
Q 001363 400 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQLE-IDAH 440 (1092)
Q Consensus 400 ~~l~~spdg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~~~-~~~h 440 (1092)
.+++|+|++ .+|++++.|++|++||+.++.... .... ..+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999998743210 0011 3689
Q ss_pred ccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC-CceeE-------EEecCCcCeEEEeecccCCc-cEEEEEecCCeE
Q 001363 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI 511 (1092)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~-------~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i 511 (1092)
...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|++ ++ .+|++++.||.|
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999999999 78888 799999999984 44444 2568999999999966 44 799999999999
Q ss_pred EEEEcCCCCc----eEEecCCCC------------ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeec
Q 001363 512 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL 574 (1092)
Q Consensus 512 ~vwd~~~~~~----~~~~~~~~~------------~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~ 574 (1092)
++||+++... ...+..+.. .|.+++|+|+|++|++++. +.|++||+.+ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence 9999998876 667777765 8999999999999998863 5799999997 8888888887
Q ss_pred cccCC------------ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----------------------
Q 001363 575 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----------------------- 619 (1092)
Q Consensus 575 ~~~~~------------~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----------------------- 619 (1092)
..... .+..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 62111 1334899999999999999999999999998876422111
Q ss_pred -------CCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001363 620 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 620 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
.....|..++|+|++++||+++.++ +++|...
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1123578899999999999998875 7777643
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.7e-32 Score=298.58 Aligned_cols=253 Identities=15% Similarity=0.204 Sum_probs=205.6
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp- 406 (1092)
..+.+|++.|++++|+|+|+ +||+|+.|++|+|||+.++..... ..+.+|...|.+++|+|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHP 68 (316)
T ss_dssp -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCG
T ss_pred eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCC
Confidence 56789999999999999998 699999999999999988753221 12778999999999987
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCCce---eEE
Q 001363 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS 480 (1092)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~~---~~~ 480 (1092)
++++||+|+.|++|++||+.++... ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++.. ...
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred CCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence 4899999999999999999986422 23367899999999999998 66 799999999999999987632 345
Q ss_pred EecCCcCeEEEeecccC---------------CccEEEEEecCCeEEEEEcCCCC---ceEEecCCCCceEEEEEccCC-
Q 001363 481 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG- 541 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~---------------~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~dg- 541 (1092)
+.+|...|.+++|++.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 57899999999997752 14689999999999999997553 445677888999999999987
Q ss_pred ---CEEEEEecCCCCceeEEEEeCCCC---e-EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001363 542 ---RRLFSCGTSKEGESFLVEWNESEG---A-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1092)
Q Consensus 542 ---~~l~~~~~~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1092)
++|++++. ++.|++|+..+. . ....+..|. ..|.+++|+|++++|++++.|++|++|+..
T Consensus 226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999886 678999998763 1 223445555 899999999999999999999999999975
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-31 Score=301.83 Aligned_cols=294 Identities=17% Similarity=0.226 Sum_probs=245.3
Q ss_pred eeecCCCCcEEEEEECCC----CCEEEEEeCCCEEEEEEccCCCcccceEEEc--ccccceeEEEEecC----CCcEEEE
Q 001363 390 ALVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVI 459 (1092)
Q Consensus 390 ~~l~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d----~~~l~l~ 459 (1092)
.+..+|..+|.+++|+|+ ...+++++.++.|++||+.+++.+....... .|...|.+++|+|+ ++ +|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~ 89 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLA 89 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEE
Confidence 346689999999999984 4566666677799999999887665443332 26678999999999 55 799
Q ss_pred EEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCceEEEE
Q 001363 460 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMA 536 (1092)
Q Consensus 460 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~ 536 (1092)
+|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...|.+++
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 9999999999999999999999999999999999762 5679999999999999999998887777 67888999999
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee-------------------------ccccCCceEEEEEcCCCC
Q 001363 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~~ 591 (1092)
|+|+++++++++. ++.|++||+.+++....+.. ...+...|.+++|+ ++
T Consensus 169 ~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 242 (366)
T 3k26_A 169 YDLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD 242 (366)
T ss_dssp ECTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT
T ss_pred ECCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC
Confidence 9999999999986 56699999998765543332 00133889999998 67
Q ss_pred EEEEEeCCCcEEEEECCCCce--------------EEEEeCCCCCCCCceEEEccC--CCEEEEEeCCCeEEEEECCCCc
Q 001363 592 QILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
++++++.|+.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++++.||.|++|++.+++
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 999999999999999987654 5666655 346899999999 9999999999999999999875
Q ss_pred e----eeecccc--cCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 656 S----VDAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 656 ~----~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
. ...+.+| ...|.+++|+ |+++++++++.|+.|++||+.
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 321 PHKAKCTTLTHHKCGAAIRQTSFS----------------------RDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGGCEEEEECCTTCCSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred CccccceEEcccccCCceEEEEeC----------------------CCCCeEEEEeCCCEEEEEEec
Confidence 3 3366666 6889988886 788999999999999999964
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.4e-31 Score=297.62 Aligned_cols=293 Identities=13% Similarity=0.164 Sum_probs=241.4
Q ss_pred eeecCCCCcEEEEEECCCCCEEE-EEeC---CCEEEEEEccCCCcccceEEEcccccceeEEEEecC---CCcEEEEEEe
Q 001363 390 ALVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG 462 (1092)
Q Consensus 390 ~~l~~h~~~V~~l~~spdg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~ 462 (1092)
.++.+|...|.+++|+|++..++ +|+. |+.|++||+.+++.... ...+|...|.+++|+|+ ++ +|++|+
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence 34678999999999999996655 5555 89999999998764432 23379999999999999 57 799999
Q ss_pred CCCcEEEEECCCCc-eeEEEecCCcCeEEEeecc----cCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCC----ce
Q 001363 463 DDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GC 532 (1092)
Q Consensus 463 ~d~~i~vwd~~~~~-~~~~~~~~~~~v~~i~~~~----~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~----~i 532 (1092)
.|+.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||+.... ....+..+.. .+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 99999999999998 8899999999999997643 5678899999999999999999887 5666655443 78
Q ss_pred EEEE----EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC---CCCEEEEEeCCCcEEEE
Q 001363 533 TRMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 533 ~~~~----~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~s~dg~i~iw 605 (1092)
.+++ |+|+++++++++. ++.|++||+.+++.... ..+. ..+.+++|+| ++.++++++.||.|++|
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence 8888 7889999999986 66799999999987544 4444 7899999999 99999999999999999
Q ss_pred ECCCCceEEEEe---CCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC-------------------ceeeeccc
Q 001363 606 DMNKVQLLTTID---AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES-------------------NSVDAAGV 662 (1092)
Q Consensus 606 d~~~~~~~~~~~---~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~ 662 (1092)
|+.+++....+. ...+...|.+++|+|+++ ++++++.||.|++|++..+ +.+..+.+
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (357)
T 3i2n_A 240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL 319 (357)
T ss_dssp EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence 998766544332 112345799999999998 8999999999999998754 34566777
Q ss_pred ccCceeeeeecCCCccccccccCCceeecCCCCCCCccce-eeccccccceeccc
Q 001363 663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPL 716 (1092)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-s~~~d~~i~lw~~~ 716 (1092)
|...|.+++|+ |+++.++ +++.|+.+++|++.
T Consensus 320 ~~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 320 STQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp CSSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECC
Confidence 88888888886 7788888 89999999999976
No 93
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-30 Score=286.20 Aligned_cols=281 Identities=15% Similarity=0.174 Sum_probs=247.0
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
.+.+|...|.+++| |++++|++++.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 37899999999999 999999999999999999998875444 5678999999999999999 89999999999999
Q ss_pred ECCCC---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCEEEE
Q 001363 471 DAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFS 546 (1092)
Q Consensus 471 d~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~ 546 (1092)
++... +.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.++++.| +++++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 98754 667888999999999998 346999999999999999 5666777888999999999998 9999999
Q ss_pred EecCCCCceeEEEEeCCCCeEEEEEee-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCC
Q 001363 547 CGTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
++. ++.|++|| .++....+.. +. ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+. ..|
T Consensus 161 ~~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i 228 (313)
T 3odt_A 161 ASA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFV 228 (313)
T ss_dssp EET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS--SCE
T ss_pred EEC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC--ceE
Confidence 986 56699999 5666667766 44 8899999999987 9999999999999999999999988664 469
Q ss_pred ceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeec
Q 001363 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 705 (1092)
.+++|+|++ .+++++.||.|++||+.+++....+..+...+.+++++ |+++ +++++
T Consensus 229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~-~~~~~ 284 (313)
T 3odt_A 229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM----------------------SNGD-IIVGS 284 (313)
T ss_dssp EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC----------------------TTSC-EEEEE
T ss_pred EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc----------------------cCCC-EEEEe
Confidence 999999999 58899999999999999999999999999999999997 5666 66789
Q ss_pred cccccceecccccc
Q 001363 706 AENKSEVEKPLFAR 719 (1092)
Q Consensus 706 ~d~~i~lw~~~~~~ 719 (1092)
.|+.+++|++....
T Consensus 285 ~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 285 SDNLVRIFSQEKSR 298 (313)
T ss_dssp TTSCEEEEESCGGG
T ss_pred CCCcEEEEeCCCCc
Confidence 99999999987543
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.8e-31 Score=295.26 Aligned_cols=287 Identities=9% Similarity=0.053 Sum_probs=242.1
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
....+|.+.|++++|+|+++ +|++|+.|+.|+|||+.+++..... ..+.+|...|.+++|+|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~ 67 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDN 67 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEES
T ss_pred ecccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCC
Confidence 44568999999999999998 6899999999999999988722110 014479999999999999
Q ss_pred CC-EEEEEeCCCEEEEEEc-cCCCcccceEEEcc--cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC---------
Q 001363 408 GS-LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--------- 474 (1092)
Q Consensus 408 g~-~las~~~d~~i~iwd~-~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~--------- 474 (1092)
++ +|++|+.|+.|++||+ .+++. ..+.+ |...|.+++|+| ++ .+++++.|+.|++||+.+
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred CCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEccccccccccccc
Confidence 99 9999999999999999 87653 35778 999999999999 77 899999999999999988
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCc--eEEecCCCCceEEEEEcc-CCCEEEEEecC
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGA--RVDYDAPGLGCTRMAYSA-NGRRLFSCGTS 550 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~--~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~ 550 (1092)
++++..+. |...|.+++|++ ++ +++++.||.|++||++. ... ......+...+.+++|+| +++++++++.
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~- 214 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI- 214 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-
T ss_pred CCeeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-
Confidence 77777776 889999999964 33 99999999999999988 443 335556777899999999 9999999986
Q ss_pred CCCceeEEEEeCCCC------eEEEEEeeccc------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 551 KEGESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
++.|++|+...+ +....+..|.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 215 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 215 ---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp ---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence 667999999887 77778887751 124899999999999999999999999999999999888875
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCCCe-EEEEE
Q 001363 619 GGGLPENPRICFNKNGTLLAVIANENR-IKILE 650 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~ 650 (1092)
+. ...|.+++ |++++|++++.||. .+.+.
T Consensus 292 ~h-~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FN-EDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CS-SSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cc-CCCceEec--CCCCeEEEEecCCccccccc
Confidence 51 24588888 99999999999998 54444
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9.7e-31 Score=302.03 Aligned_cols=280 Identities=21% Similarity=0.311 Sum_probs=241.6
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
....+|...|.|++| +++ ++++|+.||+|++||+.+++.+.. +.+|...|.+++| +
T Consensus 127 ~~~~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~ 182 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--D 182 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--C
T ss_pred ecccCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--C
Confidence 344567778999887 777 689999999999999999987765 7789999999999 8
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee---EEEecC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGH 484 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~---~~~~~~ 484 (1092)
+++|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++||+.+++.. ..+.+|
T Consensus 183 ~~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 255 (435)
T 1p22_A 183 ERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255 (435)
T ss_dssp SSEEEEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence 8999999999999999999987654 6789999999999974 4 7999999999999999988766 677899
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
...|.++++ ++.++++|+.||.|++||+++.+....+..+...+.++.+ +++++++++. ++.|++||+.+
T Consensus 256 ~~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~ 325 (435)
T 1p22_A 256 RAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIEC 325 (435)
T ss_dssp SSCEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTT
T ss_pred CCcEEEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCC
Confidence 999999998 5579999999999999999999999999999999999988 5789999886 56699999999
Q ss_pred CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------eEEEEeCCCCCCCCceEEEccCCC
Q 001363 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGT 635 (1092)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1092)
++.+..+.+|. ..|.+++| ++.++++|+.||.|++||+.++. .+..+..|. ..|.+++| ++.
T Consensus 326 ~~~~~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~ 396 (435)
T 1p22_A 326 GACLRVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEF 396 (435)
T ss_dssp CCEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSS
T ss_pred CCEEEEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCC
Confidence 99999999887 88999998 77899999999999999997766 777776554 46899999 788
Q ss_pred EEEEEeCCCeEEEEECCCCcee
Q 001363 636 LLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 636 ~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
+|++++.||.|++||+.+....
T Consensus 397 ~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 397 QIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp CEEECCSSSEEEEEC-------
T ss_pred EEEEEeCCCEEEEEECCCCCCc
Confidence 9999999999999999876443
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=8.6e-31 Score=295.60 Aligned_cols=294 Identities=17% Similarity=0.203 Sum_probs=241.9
Q ss_pred CCcceeeecccCCCCceEEeecCC---CceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCC
Q 001363 322 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1092)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spd---g~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~ 397 (1092)
.|...+..+.+|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|..
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~ 87 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTG 87 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSS
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccC
Confidence 456677899999999999999999 56 799999999999999998 444311 1667999
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEE--ecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
.|.+++|+|++++|++++.|+.|++||+.+++.+. +.+|...|.+++| +++++ +|++++.|+.|++||+.++
T Consensus 88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCS
T ss_pred CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCC
Confidence 99999999999999999999999999999876443 5679999999999 88888 8999999999999999999
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCCCE----EEEEec
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGT 549 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~----l~~~~~ 549 (1092)
+.+..+..+. .+.++.+. ...+++++.++.+++|+++......... .....+.++++.++... +++++.
T Consensus 162 ~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 162 NPMMVLQLPE-RCYCADVI----YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp SCSEEEECSS-CEEEEEEE----TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred cEEEEEecCC-CceEEEec----CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 9999998765 56566553 2478999999999999998776554332 23445667777666654 888875
Q ss_pred CCCCceeEEEEeCCCC---eEEEEEeecccc---------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001363 550 SKEGESFLVEWNESEG---AIKRTYQGLQLQ---------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~---~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
++.|++||.... ..+..+.+|... ...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 237 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 237 ----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp ----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 677999999987 556677776610 1169999999999999999999999999999999998887
Q ss_pred CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
.+ ...|.+++|+|++++|++++.|+..+.|+.
T Consensus 313 ~~--~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 313 QL--DQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CC--SSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CC--CCCceEEEECCCCCeEEEEecccccccccc
Confidence 65 346999999999999999999875554443
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-30 Score=299.31 Aligned_cols=281 Identities=19% Similarity=0.237 Sum_probs=242.3
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001363 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
..+.|+||++ ++||+|. |++|+|||..+|+..... .+.+|...|++++|+|||+ +|++|+.|++|+|||+++++.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~-~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE-EecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 4677999986 4788775 899999999999765532 4567888999999999999 899999999999999999999
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~ 556 (1092)
+..+.+|...+.++++ ++.+|++|+.|+.+++||...... ...+..|...+..+.++|+++++++++. ++.
T Consensus 182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~ 253 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL 253 (420)
T ss_dssp EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence 9999999999999877 447999999999999999987554 4567889999999999999999999986 566
Q ss_pred EEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEE-EE--EeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 557 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 557 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
+++|+..+++. +.....|. ..|.+++|+|.+..+ ++ |+.|++|++||+.+++....+..+. .+.++.
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~ 327 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSIL 327 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeee
Confidence 99999987753 34445555 899999999986544 44 3579999999999999999887653 478999
Q ss_pred EccCCCEEEEEe--CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccc
Q 001363 630 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 707 (1092)
Q Consensus 630 ~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 707 (1092)
|+|+++.+++++ .|+.|+|||+.+++.+..+.+|...|.+++|+ |||+++++++.|
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D 385 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAAD 385 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecC
Confidence 999999998876 68999999999999999999999999999996 789999999999
Q ss_pred cccceecccccc
Q 001363 708 NKSEVEKPLFAR 719 (1092)
Q Consensus 708 ~~i~lw~~~~~~ 719 (1092)
++|++|++....
T Consensus 386 ~tvriWdv~~~~ 397 (420)
T 4gga_A 386 ETLRLWRCFELD 397 (420)
T ss_dssp TEEEEECCSCSS
T ss_pred CeEEEEECCCCC
Confidence 999999976443
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=3e-31 Score=291.27 Aligned_cols=251 Identities=18% Similarity=0.318 Sum_probs=205.6
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~ 468 (1092)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999886421 23468899999999999863 77 799999999999
Q ss_pred EEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccC---
Q 001363 469 VWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN--- 540 (1092)
Q Consensus 469 vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d--- 540 (1092)
+||++++ +.+..+.+|...|.+++|+|..++.+|++++.||+|++||+..... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9999987 4667888999999999998876688999999999999999987643 2345567778999999997
Q ss_pred --------------CCEEEEEecCCCCceeEEEEeCCCC---eEEEEEeeccccCCceEEEEEcCCC----CEEEEEeCC
Q 001363 541 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD 599 (1092)
Q Consensus 541 --------------g~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~d 599 (1092)
+++|++++. ++.|++||...+ +.+..+.+|. ..|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence 468888875 667999999755 4566777777 899999999986 789999999
Q ss_pred CcEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 600 HVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 600 g~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
++|++|++.+.. ....+..+ ...|.+++|+|++++|++++.|+.|++|+...
T Consensus 238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999999987631 11223322 34689999999999999999999999999763
No 99
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.3e-30 Score=297.70 Aligned_cols=298 Identities=13% Similarity=0.165 Sum_probs=241.8
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-CCCEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV 413 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las 413 (1092)
....+++++|+...++++|+.||.|+||++........ ....+.+|...|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35667999999876777789999999999966432210 0012678999999999999 9999999
Q ss_pred EeCCCEEEEEEccCCCcc----cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE--ecCCcC
Q 001363 414 AYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAP 487 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~ 487 (1092)
|+.|++|++||+.++... .....+.+|...|.+++|+|+++. +|++++.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987432 233468899999999999999843 7999999999999999999999999 889999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
|.+++|++ ++.+|++++.||.|++||+++.+....+ ..+... +..++|+|++++++++.. +..++.|++||..++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence 99999965 6789999999999999999998888777 566654 899999999999888732 123788999999987
Q ss_pred eE-EEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCce-EEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 566 AI-KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 566 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
+. +...... +...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++ .
T Consensus 256 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 256 EEPLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp SSCSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred cCCceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 65 3333211 1367999999999999975 55799999999999884 555544444467999999999998764 5
Q ss_pred CCeEEEEECCCCc
Q 001363 643 ENRIKILETPESN 655 (1092)
Q Consensus 643 dg~i~iw~~~~~~ 655 (1092)
++.+++|++.++.
T Consensus 332 ~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 332 CEIARFYKLHERK 344 (402)
T ss_dssp TEEEEEEEEETTE
T ss_pred ceeEEEEEcCCCc
Confidence 6799999998764
No 100
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=2.1e-30 Score=289.95 Aligned_cols=307 Identities=10% Similarity=0.103 Sum_probs=227.2
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
...+.+|++.|++++|+|+|+ +||+|+.||.|+|||+.++...... ...+.+|...|.+++|+|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~ 67 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWAS 67 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECC
T ss_pred cccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcC
Confidence 356789999999999999998 6899999999999999987533211 112678999999999999
Q ss_pred --CCCEEEEEeCCCEEEEEEccCCCcc------cceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCCc
Q 001363 407 --DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 407 --dg~~las~~~d~~i~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
|+++|++++.|+.|++||+.+++.. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++
T Consensus 68 ~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTT
T ss_pred CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChH
Confidence 6999999999999999999987431 334467899999999999999 88 89999999999999999887
Q ss_pred eeEEEe-------------cCCcCeEEEeeccc-CCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccC
Q 001363 477 RTYSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN 540 (1092)
Q Consensus 477 ~~~~~~-------------~~~~~v~~i~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d 540 (1092)
.+..+. +|...+.+++|++. .++.++++++.++.+.+|+...... ...+..|...|.+++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~ 225 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC
T ss_pred HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC
Confidence 665443 57888999999764 1357999999999998888777665 5567778889999999999
Q ss_pred C----CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE----eCCCcEEEEECCCCce
Q 001363 541 G----RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA----GDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 541 g----~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----s~dg~i~iwd~~~~~~ 612 (1092)
+ ++|++++. ++.|++||+.++.......... .........+....+..+ .....+.+|+....+.
T Consensus 226 ~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 226 IGRWYQLIATGCK----DGRIRIFKITEKLSPLASEESL---TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp SSCSSEEEEEEET----TSCEEEEEEEECC------------------------------------------CCSEEEEE
T ss_pred CCCcceEEEEEcC----CCeEEEEeCCCCcCccccCCcc---cceeccCCCcccccccccccccccceeeeecccccccE
Confidence 8 78999886 6679999998776544433322 333333344443333333 3445566677667777
Q ss_pred EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeec
Q 001363 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 660 (1092)
+..+..|. ..|.+++|+|++++|++++.||.|++|++.++..+..+
T Consensus 299 ~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 299 LSEHDDHN--GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEECTTS--SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEeccc--ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 77777553 46999999999999999999999999999987655543
No 101
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.9e-30 Score=292.58 Aligned_cols=285 Identities=15% Similarity=0.156 Sum_probs=242.4
Q ss_pred ecCCCCc--EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEE
Q 001363 392 VRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1092)
Q Consensus 392 l~~h~~~--V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 469 (1092)
..+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~i 160 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDI 160 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEE
Confidence 3355554 45566664 56888889999999999998755422 223889999999999999 8999999999999
Q ss_pred EECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
||+.+++.+..+.+|...|.+++| ++.++++++.||.|++||++. ......+..|...|.+++|+|+++++++++
T Consensus 161 wd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 161 YDVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 999999999999999999999998 346999999999999999994 555667888999999999999999999998
Q ss_pred cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-Ee--CCCcEEEEECCCCceEEEEeCCCCCCCC
Q 001363 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AG--DDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
. ++.|++||+.+++.+..+..|. ..|.+++|+|++..+++ ++ .|+.|++||+.+++.+..+..+ ..+
T Consensus 237 ~----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v 306 (401)
T 4aez_A 237 N----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQV 306 (401)
T ss_dssp T----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCE
T ss_pred C----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcE
Confidence 6 5669999999999998888877 89999999998755554 44 6999999999999999888754 358
Q ss_pred ceEEEccCCCEEEEEe--CCCeEEEEECCCCceee--ecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001363 626 PRICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 626 ~~v~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
.+++|+|+++++++++ .||.|++|++.++.... .+.+|...|.+++++ |+++++
T Consensus 307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l 364 (401)
T 4aez_A 307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS----------------------PDGRIL 364 (401)
T ss_dssp EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC----------------------TTSSEE
T ss_pred EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC----------------------CCCCEE
Confidence 9999999999999954 89999999999865444 466888899988886 789999
Q ss_pred eeeccccccceeccccc
Q 001363 702 ISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 702 ~s~~~d~~i~lw~~~~~ 718 (1092)
++++.|+.+++|++..+
T Consensus 365 ~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 365 STAASDENLKFWRVYDG 381 (401)
T ss_dssp EEECTTSEEEEEECCC-
T ss_pred EEEeCCCcEEEEECCCC
Confidence 99999999999998744
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=278.05 Aligned_cols=277 Identities=19% Similarity=0.252 Sum_probs=236.8
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
.++|+||+++ +||+| .|++|+|||+.+++.++.. .+.+|...|++++|+|+++ ++++|+.|++|++||+++++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 5679999986 77776 5899999999999866533 4567888999999999999 8999999999999999999999
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
..+.+|...+.++.+ ++..+++++.++.+++|+...... ...+..|...+..+.++++++++++++. ++.|
T Consensus 103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i 174 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV 174 (318)
T ss_dssp EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence 999999999988765 346899999999999999887655 4567788899999999999999999986 6679
Q ss_pred EEEeCCCCeEE----EEEeeccccCCceEEEEEcCCCCEEE---EEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 558 VEWNESEGAIK----RTYQGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 558 ~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~---~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
++||..+++.. .....+ ...|..+.++|++..++ +++.+++|++||............. ..+..++|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~---~~v~~~~~ 248 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQH---QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILW 248 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCC---CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS---SCEEEEEE
T ss_pred eEEECCCCcccccceeeeccc---CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce---eeeeeeee
Confidence 99999887543 223333 37899999999876543 4568899999999998887776544 34889999
Q ss_pred ccCCCEEEEEe--CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccc
Q 001363 631 NKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1092)
Q Consensus 631 s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1092)
+|+++.+++++ .|+.|++||+.+++.+..+.+|...|.+++|+ ||++++++++.|+
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~ 306 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAADE 306 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETTT
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecCC
Confidence 99999888765 68999999999999999999999999999996 7899999999999
Q ss_pred ccceeccc
Q 001363 709 KSEVEKPL 716 (1092)
Q Consensus 709 ~i~lw~~~ 716 (1092)
+|++||+.
T Consensus 307 ~v~iWd~~ 314 (318)
T 4ggc_A 307 TLRLWRCF 314 (318)
T ss_dssp EEEEECCS
T ss_pred eEEEEECC
Confidence 99999975
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=5.7e-30 Score=297.48 Aligned_cols=253 Identities=14% Similarity=0.227 Sum_probs=207.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc--------ccceEEEcccc------------cceeEEEEecCC-
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC- 453 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~------------~~v~~~~~s~d~- 453 (1092)
|.+.|.+++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. +.|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 678999999999999999999999999999998752 11344678998 889999999998
Q ss_pred -CcEEEEEEeCCCcEEEEECCCCcee---------------------------------------EE-EecCCcCeEEEe
Q 001363 454 -KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSLC 492 (1092)
Q Consensus 454 -~~l~l~s~~~d~~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~i~ 492 (1092)
. .|++++.|++|++||+.++... .. ..+|...|.+++
T Consensus 107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 5 7999999999999998775432 12 367999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEE--------ecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCC
Q 001363 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
|++ ++.+|++| .||.|++||++....... +..+...|.+++|+|++ +++++++. ++.|++||+.
T Consensus 185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~ 257 (447)
T 3dw8_B 185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR 257 (447)
T ss_dssp ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence 966 67899998 899999999985443332 45678899999999999 89999986 5679999999
Q ss_pred CCeE----EEEEeeccc---------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCCCCC-----
Q 001363 564 EGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE----- 624 (1092)
Q Consensus 564 ~~~~----~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~----- 624 (1092)
+++. +..+.++.. +...|.+++|+|+++++++++. +.|++||+.+ ++.+..+..+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 9887 677777650 0128999999999999999999 9999999997 888888876643111
Q ss_pred --------CceEEEccCCCEEEEEeCCCeEEEEECCCCcee
Q 001363 625 --------NPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 625 --------v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
+..++|+|++++|++++.||.|++||+.+++.+
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999988665
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.1e-30 Score=288.98 Aligned_cols=255 Identities=17% Similarity=0.302 Sum_probs=217.7
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v 469 (1092)
+.+|...|.+++|+|++++||+|+.|+.|++||+..+. ......+.+|...|++++|+++ ++ +|++++.|+.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 77899999999999999999999999999999998432 2333468899999999999987 77 8999999999999
Q ss_pred EECCCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEcc------
Q 001363 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 539 (1092)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 539 (1092)
||+.+++ .+..+.+|...|.+++|++..++.+|++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999997 77888899999999999776437899999999999999998874 4456677888999999999
Q ss_pred -------CCCEEEEEecCCCCceeEEEEeCCCCe----EEEEEeeccccCCceEEEEEcCC---CCEEEEEeCCCcEEEE
Q 001363 540 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 605 (1092)
Q Consensus 540 -------dg~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iw 605 (1092)
++.++++++. ++.|++||+.++. ....+.+|. ..|.+++|+|+ +.++++++.||.|++|
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999986 5569999998764 445666666 89999999999 8999999999999999
Q ss_pred ECCCCc---eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCce
Q 001363 606 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1092)
Q Consensus 606 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 656 (1092)
|+.++. .........+...+.+++|+|++++|++++.||.|++|++.....
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 999875 333333333456789999999999999999999999999886543
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.3e-30 Score=289.34 Aligned_cols=263 Identities=13% Similarity=0.151 Sum_probs=216.6
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
++.++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+..... ..+.+|...|.+++|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~-----------------~~~~~h~~~v~~~~~~ 64 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWA 64 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEEC
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceee-----------------eEecCCCCcEEEEEeC
Confidence 4577899999999999999998 689999999999999984332211 1267899999999999
Q ss_pred CC--CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCCc--eeE
Q 001363 406 PD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTY 479 (1092)
Q Consensus 406 pd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~--~~~ 479 (1092)
|+ +++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ...
T Consensus 65 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~ 141 (379)
T 3jrp_A 65 HPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPI 141 (379)
T ss_dssp CGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEE
T ss_pred CCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeE
Confidence 87 999999999999999999987521 23367789999999999999 88 89999999999999999874 445
Q ss_pred EEecCCcCeEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCCce----EEecCCCCceEEEEEccC---C
Q 001363 480 SFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSAN---G 541 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~d---g 541 (1092)
.+.+|...|.+++|++.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+ +
T Consensus 142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence 677899999999997742 5789999999999999999876643 466778889999999999 8
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 001363 542 RRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 613 (1092)
++|++++. ++.|++||+.++... ........+...|.+++|+|+++++++++.||.|++|++..+...
T Consensus 222 ~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 222 SYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp EEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred CeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 99999986 566999999887421 112121123478999999999999999999999999999855433
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.9e-29 Score=291.29 Aligned_cols=275 Identities=16% Similarity=0.241 Sum_probs=239.2
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001363 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
.+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357778998887 89999999999999999999987554 68899999999999 677 8999999999999999
Q ss_pred CCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCCCEEEEEec
Q 001363 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
.+++.+..+.+|...|.+++|+ +.++++|+.||.|++||+.+.... ..+..+...|.++++ +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999999999984 359999999999999999987765 567788889999998 7889999986
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
++.|++||+.+++.+..+.+|. ..+.++.++ ++++++|+.||.|++||+.+++.+..+..+. ..|.+++
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~ 343 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIR 343 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEE
T ss_pred ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEE
Confidence 6779999999999999999887 889999884 6799999999999999999999999988654 4588888
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCc---------eeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcc
Q 001363 630 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 700 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 700 (1092)
| ++.++++++.||.|++||+.++. .+..+.+|...|.++++. ++.
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~ 397 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ 397 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence 8 78999999999999999987655 677788888888777663 678
Q ss_pred ceeeccccccceecccccc
Q 001363 701 EISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 701 l~s~~~d~~i~lw~~~~~~ 719 (1092)
+++++.||.|++|++....
T Consensus 398 l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEECCSSSEEEEEC-----
T ss_pred EEEEeCCCEEEEEECCCCC
Confidence 9999999999999987543
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.9e-29 Score=280.00 Aligned_cols=290 Identities=17% Similarity=0.152 Sum_probs=238.5
Q ss_pred ecCCCCcEEEEEECCC---CCEEEEEeCCCEEEEEEccC-CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcE
Q 001363 392 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1092)
Q Consensus 392 l~~h~~~V~~l~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 467 (1092)
+.+|.+.|.+++|+|+ |++|++|+.||.|++||+.+ +..+ ...+.+|.+.|.+++|+|+++ +|++++.|+.|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v 110 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA 110 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence 7789999999999999 69999999999999999997 4332 135778999999999999999 89999999999
Q ss_pred EEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+ ..++++
T Consensus 111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 186 (368)
T 3mmy_A 111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA 186 (368)
T ss_dssp EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence 999999998776 5579999999999777788999999999999999999988887777665 455555554 466666
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE----EEEEeCCCcEEEEECCCC---ceEEEEeCCC
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG 620 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~s~dg~i~iwd~~~~---~~~~~~~~~~ 620 (1092)
+. ++.+.+|+.............. ....+.++.+.++... +++++.||.|++|++... .....+..+.
T Consensus 187 ~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 187 TA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 65 5569999998765443322211 2345666666665544 999999999999999987 4556665543
Q ss_pred CC----------CCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceee
Q 001363 621 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690 (1092)
Q Consensus 621 ~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 690 (1092)
.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...+.+++|+
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----------------- 324 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN----------------- 324 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC-----------------
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC-----------------
Confidence 21 158999999999999999999999999999999999999999999999996
Q ss_pred cCCCCCCCccceeeccccccceeccc
Q 001363 691 NEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 691 ~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
|+++++++++.|+..+.|++.
T Consensus 325 -----~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 325 -----HNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -----TTSSCEEEEECCCSTTCGGGC
T ss_pred -----CCCCeEEEEeccccccccccc
Confidence 789999999999877777644
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.4e-29 Score=280.67 Aligned_cols=285 Identities=10% Similarity=-0.001 Sum_probs=240.1
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..+|.+.|.+++|+|++++|++++.|+.|++||+.++........+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999987632233356689999999999999872 388899999999999
Q ss_pred C-CCCceeEEEec--CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC---------CCceEEecCCCCceEEEEEcc
Q 001363 472 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA 539 (1092)
Q Consensus 472 ~-~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~i~~~~~s~ 539 (1092)
+ .+++. ..+.+ |...|.+++|++ +.++++++.||.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77754 77888 999999999976 57999999999999999987 55555555 777899999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCC-CeE--EEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----
Q 001363 540 NGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV----- 610 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~----- 610 (1092)
++ +++++. ++.|++||+.+ +.. ......+. ..+.+++|+| +++++++++.||.|++|++...
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 88 777765 66799999988 543 22333333 7899999999 9999999999999999999887
Q ss_pred -ceEEEEeCCCC-------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccc-cCceeeeeecCCCccccc
Q 001363 611 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA 681 (1092)
Q Consensus 611 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ 681 (1092)
+....+..+.. ...|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++ |
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~------- 302 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C------- 302 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-------
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-------
Confidence 77777776643 337899999999999999999999999999999999999988 88887776 2
Q ss_pred cccCCceeecCCCCCCCccceeeccccc-cceecc
Q 001363 682 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP 715 (1092)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~-i~lw~~ 715 (1092)
+++++++++.|+. .+.+..
T Consensus 303 ---------------~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 303 ---------------SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---------------CSSEEEEEEECTHHHHCSSS
T ss_pred ---------------CCCeEEEEecCCcccccccc
Confidence 5788999999998 777664
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=4.9e-29 Score=278.82 Aligned_cols=295 Identities=11% Similarity=0.123 Sum_probs=222.3
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc-cceEEEcccccceeEEEEec--CCCcEEEEEEeCCCcE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTI 467 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i 467 (1092)
++.+|.+.|.+++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| |++ +|++++.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 47899999999999999999999999999999999976432 33446779999999999999 588 89999999999
Q ss_pred EEEECCCC---------ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec------------
Q 001363 468 KVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------------ 526 (1092)
Q Consensus 468 ~vwd~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------ 526 (1092)
++||+.++ +.+..+.+|...|.+++|++..++.+|++++.||.|++||+++.+....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999987 567888999999999999775337899999999999999998876543221
Q ss_pred -CCCCceEEEEEccC---CCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCC----CEEEEE
Q 001363 527 -APGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILAA 596 (1092)
Q Consensus 527 -~~~~~i~~~~~s~d---g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~ 596 (1092)
.+...+.+++|+|+ +..+++++. ++.+.+|+...+.. +..+.+|. ..|.+++|+|++ ++++++
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEEE
Confidence 45668999999997 889999876 66688888777765 55666666 899999999998 799999
Q ss_pred eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE----eCCCeEEEEECCCCceeeecccccCceeeeee
Q 001363 597 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI----ANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1092)
Q Consensus 597 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 672 (1092)
+.||.|++||+.++......... .........++....++.+ .....+.+|+....+.+..+.+|...|.+++|
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp ETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred cCCCeEEEEeCCCCcCccccCCc--ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 99999999999876554433222 1122333334443333333 23445566666666788888999999999999
Q ss_pred cCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001363 673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~ 718 (1092)
+ |+++++++++.|+.|++|++...
T Consensus 315 s----------------------~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 315 N----------------------LTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp C----------------------SSSCCEEEEETTSCEEEEEECTT
T ss_pred c----------------------CCCCEEEEecCCCcEEEEecCcC
Confidence 6 78899999999999999998743
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-28 Score=283.34 Aligned_cols=306 Identities=11% Similarity=-0.006 Sum_probs=234.5
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCC---eeEEeeeeee---eccc--------------------------
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKVW---DIGA-------------------------- 382 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~---~~~~~~~~~~---d~~~-------------------------- 382 (1092)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.......- ....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3899999999999 55555 46899999999998 4433211000 0000
Q ss_pred ------ccceeeEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEcc--CCCcccceEEEcccccceeEEEEecCC
Q 001363 383 ------CSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAPC 453 (1092)
Q Consensus 383 ------~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~ 453 (1092)
...........+|...|.+++|+|+|++| |+++.|+.|++||+. +++.+.... ...|...|.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAEDD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECTTS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcCCC
Confidence 00000111234677789999999999996 889999999999999 776655321 12567899999999999
Q ss_pred CcEEEEEEeCCCcEEEEECCCCceeE----EEecCCcCeEEEeeccc-CCccEEEEEecCCeEEEEEcCCCCceEE-ecC
Q 001363 454 KQISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARVD-YDA 527 (1092)
Q Consensus 454 ~~l~l~s~~~d~~i~vwd~~~~~~~~----~~~~~~~~v~~i~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~ 527 (1092)
+ +|++|+.|+.|++|++.+++... .+.+|...|.+++|++. ..+.+|++++.|+.|++||+.+...... +..
T Consensus 162 ~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 162 T--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp S--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred C--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 9 89999999999999998887554 77899999999999774 2268999999999999999998887776 557
Q ss_pred CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc----------------------ccCCceEEEE
Q 001363 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNSVSVVH 585 (1092)
Q Consensus 528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v~~~~ 585 (1092)
|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. .....+..++
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 314 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII 314 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred CCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence 88999999999 9999999986 6789999999999988886431 1235789999
Q ss_pred EcCCCCEEEEEe-CCCcEEEEEC--CCC---ceEEEEeCCCCCCCCceEEEccCCCEEEEEeC------CCeEEEEECCC
Q 001363 586 FDTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPE 653 (1092)
Q Consensus 586 ~~~~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw~~~~ 653 (1092)
|+|+++++++++ .++.|++|++ .++ ..+..+..+ ..+.+++|+|++.++++++. +..|.+|.+..
T Consensus 315 ~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 315 KSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp ECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 999999999998 8999999999 555 566667655 45899999996544443332 45578887653
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.7e-27 Score=271.02 Aligned_cols=350 Identities=12% Similarity=0.082 Sum_probs=260.0
Q ss_pred ceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEc
Q 001363 347 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAY 425 (1092)
Q Consensus 347 ~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~ 425 (1092)
++++++++.|+.|++||+.+++.+.. +..| ..+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35889999999999999999987754 3344 458999999999987 56668999999999
Q ss_pred cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEE-EE
Q 001363 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FS 504 (1092)
Q Consensus 426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s 504 (1092)
.+++.+. .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|++ +++.+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEE
Confidence 9987554 444444 8999999999994 3456667899999999999998888754 4678888865 55666 78
Q ss_pred EecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEE
Q 001363 505 ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV 584 (1092)
Q Consensus 505 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 584 (1092)
++.++.|++||+.+.+....+..+ ..+..++|+|++++++.++. .++.|++||+.+++.+..+..+ ..+.++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~ 205 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGI 205 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccce
Confidence 888999999999988777766654 45689999999998865442 2667999999999888777642 578999
Q ss_pred EEcCCCCEEEEEe---CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCceeeec
Q 001363 585 HFDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 585 ~~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~ 660 (1092)
+|+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 9999999999987 78999999999999988887653 36889999999987 56678999999999999888777
Q ss_pred ccccCcee---eeeecCCCccccccccCCceeecCCC----CCCC--ccceeeccccccceeccccccCccccccccCCc
Q 001363 661 GVLSDNLR---KLSVNPISTVTGAGIANGSVSVNEDP----KEDV--KPEISVEAENKSEVEKPLFARPSECQSLLLPSK 731 (1092)
Q Consensus 661 ~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~----s~d~--~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~ 731 (1092)
..+..+.. .+...|.+.... ...|.... .+.. ..+...+.+...++|++..+....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~------~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~--------- 347 (391)
T 1l0q_A 283 AVGKNPYASGQFIGSIPVQPVYP------SADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK--------- 347 (391)
T ss_dssp ECSSSEECCSSCEEECSSCCCCC------BCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC---------
T ss_pred ECCcCCCccceeeeccccccccc------ccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC---------
Confidence 66654432 123333222110 11111110 0111 335556667888999976433211
Q ss_pred cccccEEEEEEecCCcEEEEee
Q 001363 732 VKANKISRLTYNNGGQAIFALA 753 (1092)
Q Consensus 732 ~~~~~i~~l~~s~~g~~l~~~~ 753 (1092)
+.. ....|+++|.+.+...
T Consensus 348 -~~~--~~~~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 348 -KQN--PTHTYSETGIYTVRLT 366 (391)
T ss_dssp -SSS--CEECCSSCEEEEEEEE
T ss_pred -cCC--CeEEeCCCceEEEEEE
Confidence 111 2357888888766543
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.2e-28 Score=275.26 Aligned_cols=282 Identities=13% Similarity=0.120 Sum_probs=215.9
Q ss_pred eeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
.+.++.+|.+.|++++|||||+ +||+|+.++ ++|||+.+++..... +...+..++++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~ 67 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRML 67 (355)
T ss_dssp --------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEEC
T ss_pred CccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEc
Confidence 3456789999999999999998 688888765 789999887655421 22257889999
Q ss_pred CCCCEEE-EEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001363 406 PDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1092)
Q Consensus 406 pdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~ 483 (1092)
+++++++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+..
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc
Confidence 9998885 56778999999999987655 443 66789999999864 3333 3789999999998 77776655
Q ss_pred CCcCeEEEeecccCCccEEEE--EecCCeEEEEEcCCCC----------------ceEEecCCCCceEEEEEccCCCEEE
Q 001363 484 HGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 484 ~~~~v~~i~~~~~~~~~~l~s--~~~dg~i~vwd~~~~~----------------~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
+...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|+
T Consensus 139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence 333444543 35555 6899999999998765 2567888999999999999999999
Q ss_pred EEecCCCCcee-EEEEeCCCCeEEEEEe-e-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--E-----
Q 001363 546 SCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T----- 615 (1092)
Q Consensus 546 ~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~----- 615 (1092)
+++. ++. |++||+.+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+.... .
T Consensus 212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp EEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred EEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 9986 776 9999999999999998 5 66 899999999999999999999999999997653211 1
Q ss_pred -------------EeCC-CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 616 -------------IDAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 616 -------------~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
+... ........++|+++++++++++.||.+++|++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 0001 1112246799999999999999999999998764
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=9.7e-27 Score=264.81 Aligned_cols=328 Identities=11% Similarity=0.117 Sum_probs=254.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 535 (1092)
++++++.|+.|++||+.+++.+..+..|.. +.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 788999999999999999999999987754 78899865 56665 677799999999999888777776555 89999
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEE
Q 001363 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT 614 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~ 614 (1092)
+|+|+++++++++. .++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++.+.
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999999877653 2567999999999998887754 368999999999988 677789999999999999988
Q ss_pred EEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCC
Q 001363 615 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 693 (1092)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1092)
.+..+. .+..++|+|+++++ ++++.++.|++||+.+++....+.
T Consensus 153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 197 (391)
T 1l0q_A 153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------------------------------- 197 (391)
T ss_dssp EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence 887653 36899999999887 566778999999987542221100
Q ss_pred CCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcc
Q 001363 694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 773 (1092)
Q Consensus 694 ~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~ 773 (1092)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCCceeeEEecCCCCCeEEE
Q 001363 774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSL 849 (1092)
Q Consensus 774 ~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~~~~~~~~~~~~~~i~~l 849 (1092)
+...+.+++|+|+++++++++ ++.|++||+.+++.+..+..+. .+.++
T Consensus 198 ---------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 249 (391)
T 1l0q_A 198 ---------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGI 249 (391)
T ss_dssp ---------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEE
T ss_pred ---------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEE
Confidence 122355677778877777664 5789999999998888887654 57899
Q ss_pred EEcCCCCCEE-EEEeCCCcEEEEEcCCceeeEeeccccCCeE---EEEEcC------------CC----------CEEEE
Q 001363 850 AFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLVFSD------------AL----------NILVS 903 (1092)
Q Consensus 850 ~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~---~l~~sp------------dg----------~~l~s 903 (1092)
+|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.| +. ..+..
T Consensus 250 ~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~ 328 (391)
T 1l0q_A 250 AVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD 328 (391)
T ss_dssp EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred EEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence 9999 77766 6778899999999999999988877765432 123332 21 34566
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 904 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 904 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
.+.|..+++|++..+.... . .-....|+++|.+.+.
T Consensus 329 ~~~~~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 329 LSKDATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCBSCSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred CCCCceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence 6778899999998765211 1 1224679999998876
No 114
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=2.4e-28 Score=278.96 Aligned_cols=285 Identities=13% Similarity=0.143 Sum_probs=232.9
Q ss_pred CcEEEEEECCCCCEEE-EEeCCCEEEEEEccCC-CcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECC
Q 001363 397 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV 473 (1092)
Q Consensus 397 ~~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~ 473 (1092)
.....++++|+...++ +++.||.|+||++... +.......+.+|.+.|.+++|+| +++ +|++|+.||+|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455689999876554 5788999999999654 22233335779999999999999 788 89999999999999999
Q ss_pred CC-------ceeEEEecCCcCeEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCceEEe--cCCCCceEEEEEccCCCE
Q 001363 474 TG-------SRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 474 ~~-------~~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~dg~~ 543 (1092)
++ +.+..+.+|...|.+++|++ ++ .+|++++.||.|++||+.+.+....+ ..|...|.+++|+|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence 88 67889999999999999976 44 59999999999999999999888888 788899999999999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEE-eeccccCCceEEEEEcCCCCEEEEE---eCCCcEEEEECCCCce-EEEEeC
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDA 618 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~---s~dg~i~iwd~~~~~~-~~~~~~ 618 (1092)
|++++. ++.|++||+++++.+..+ .+|. ...+..+.|+|++.++++| +.|+.|++||+.+++. +.....
T Consensus 191 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 191 ICTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp EEEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC
T ss_pred EEEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec
Confidence 999986 667999999999999888 6666 2348999999999999998 7999999999998765 333332
Q ss_pred CCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCce-eeeccc--ccCceeeeeecCCCccccccccCCceeecCCC
Q 001363 619 GGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSVNEDP 694 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1092)
. +...+.+++|+|++++++++ +.||.|++|++.+++. +..+.. +...+.+++|+
T Consensus 265 ~-~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s--------------------- 322 (402)
T 2aq5_A 265 D-TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM--------------------- 322 (402)
T ss_dssp C-CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC---------------------
T ss_pred c-CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe---------------------
Confidence 2 23468999999999999755 4799999999998874 444443 45788888886
Q ss_pred CCCCccceeeccccccceeccc
Q 001363 695 KEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 695 s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
|++..+++ .++.+++|++.
T Consensus 323 -p~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 323 -PKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp -CGGGSCGG--GTEEEEEEEEE
T ss_pred -ccccccee--cceeEEEEEcC
Confidence 56666665 45689999976
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.3e-27 Score=249.30 Aligned_cols=270 Identities=10% Similarity=0.046 Sum_probs=200.8
Q ss_pred EEEEEeCCCeEEEEECCCC---ceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccce
Q 001363 636 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712 (1092)
Q Consensus 636 ~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~l 712 (1092)
.++++++ ..|++|+..++ +.+.+...+..+|..+.+.|+..- ++.... |
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------~~~~~~-~---- 107 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN----------------------LVCVAL-G---- 107 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS----------------------CEEEEE-C----
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc----------------------eeeeee-c----
Confidence 4555555 69999999998 788899999999999988764332 211111 0
Q ss_pred eccccccCccccccccCCccccccEEEEEEecC----CcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCC
Q 001363 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 788 (1092)
Q Consensus 713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~----g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g 788 (1092)
.-+...|.+++++|+ ++.++.++.+ +.+|++
T Consensus 108 ------------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l------------------------- 142 (356)
T 2w18_A 108 ------------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL------------------------- 142 (356)
T ss_dssp ------------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-------------------------
T ss_pred ------------------cccccceEEEEECCCccccccEEEeCCCe--EEEEec-------------------------
Confidence 115678999999999 9988887744 555542
Q ss_pred CceeeecCCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEc-CCceeeEEecCCCCCeEEEEEcC--CCCCEEEEE
Q 001363 789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIG 862 (1092)
Q Consensus 789 ~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~s~--~d~~~lasg 862 (1092)
++++++.++. |+.|++|++ .+++.+..+..|...++.++|++ .++.+||+|
T Consensus 143 -----------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg 199 (356)
T 2w18_A 143 -----------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT 199 (356)
T ss_dssp -----------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred -----------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence 3556666654 788999998 45888888888888888888887 467899999
Q ss_pred eCCCcEEEEEcCCceeeEeecccc---CCeEEEEEcCCCCEE------------EEEeCCCcEEEEEcCCCceeeeeeee
Q 001363 863 MDDSTILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQ 927 (1092)
Q Consensus 863 ~~dg~v~iwd~~~~~~~~~l~~h~---~~V~~l~~spdg~~l------------~s~s~Dg~I~iwd~~~~~~~~~~~~~ 927 (1092)
+.|++|+|||+.+|+++.++.+|. ..+.+++|+|||+++ ++|+.|++|++||..+++......+.
T Consensus 200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~ 279 (356)
T 2w18_A 200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC 279 (356)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee
Confidence 999999999999999999998754 367788999999886 66889999999999987755433333
Q ss_pred cCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEE-EEEEecCCCEEEEEECCCcEEEE
Q 001363 928 TPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPIS-QATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 928 ~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~-~l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
.+.++.. .+. ..+.++.++|+ +.|++|+|||+.+++++.. +.+|...+. .++|||||++|++|+.|++|+||
T Consensus 280 ~p~Gh~~---~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 280 LPPGQAG---RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp CCTTCCC---CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEE-ECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred ccCCCcc---eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEE-ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 3445543 233 33444888888 4799999999999999988 557766554 68999999999999999999999
Q ss_pred Ec
Q 001363 1006 EA 1007 (1092)
Q Consensus 1006 d~ 1007 (1092)
|+
T Consensus 354 d~ 355 (356)
T 2w18_A 354 HY 355 (356)
T ss_dssp EE
T ss_pred cC
Confidence 96
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.4e-26 Score=265.60 Aligned_cols=355 Identities=14% Similarity=0.092 Sum_probs=261.0
Q ss_pred CCCcEEEEEECCCCCEEEEEeCC-CEEEEEEccCCCcccceEEEcccccceeEEE---EecCCCcEEEE-----------
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLA---FSAPCKQISVI----------- 459 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~---~s~d~~~l~l~----------- 459 (1092)
....|..+.++|....++..... ...+++.. .....+..++ |+|+++.++++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM-------------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR 92 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEE-------------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeec-------------ccCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence 44567778888865444443211 11222221 1223455666 77776642222
Q ss_pred -EEeCCC--cEEEEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-----EecCCC
Q 001363 460 -TCGDDK--TIKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPG 529 (1092)
Q Consensus 460 -s~~~d~--~i~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~ 529 (1092)
+++.++ .|..||..++ +.+..+..+. .+.+++|++ ++.++++++.++.|++||+.+++... .+..+.
T Consensus 93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 93 IRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp ESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred ecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 223344 4444555445 5566666554 455888866 66788888899999999999887766 344677
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 001363 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN 608 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~ 608 (1092)
..+.+++|+++++.+++++. ++.|++||..+++.+..+..+. ..+.+++|+|+++.+++++ .++.|++||+.
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTG---KWSKILLYDPIRDLVYCSNWISEDISVIDRK 242 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSS---SSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCC---CCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence 78999999999999998875 6679999999999998888766 7899999999999886554 89999999999
Q ss_pred CCceEEEEeCCCCCCCCceEEEccCCCEEEEEe--------CCCeEEEEECCCCceeeecccccCceeeeeecCCCcccc
Q 001363 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--------NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1092)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1092)
+++.+..+..+. .+.+++|+|+++++++++ .|+.|++||+.+++.....
T Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------------------- 299 (433)
T 3bws_A 243 TKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------------------- 299 (433)
T ss_dssp TTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------------
T ss_pred CCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------------
Confidence 999888776543 378999999999999887 3667777766543211100
Q ss_pred ccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001363 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 760 (1092)
Q Consensus 681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~ 760 (1092)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-e-CCeEEEEEcCCceeeEE
Q 001363 761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILT 838 (1092)
Q Consensus 761 w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-s-dg~i~iwd~~~~~~~~~ 838 (1092)
.+...+.+++|+|+++.++++ + ++.|++||+.+++.+..
T Consensus 300 ---------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 300 ---------------------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp ---------------------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ---------------------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 012245567888888755444 3 68899999998888877
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeC---------------CCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEE
Q 001363 839 IMPPSPTATSLAFNPHDNNVIAIGMD---------------DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 903 (1092)
Q Consensus 839 ~~~~~~~i~~l~~s~~d~~~lasg~~---------------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s 903 (1092)
+. +...+.+++|+| ++++|++++. ||.|++||+.+++.+..+.. ...+.+++|+|||++|++
T Consensus 341 ~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 341 IP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp EE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEE
T ss_pred ec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEE
Confidence 76 667899999999 8888888876 57999999999999888886 457999999999999998
Q ss_pred EeC-CCcEEEEEcCC
Q 001363 904 SGG-DAQIFVWDVDG 917 (1092)
Q Consensus 904 ~s~-Dg~I~iwd~~~ 917 (1092)
++. |+.|++|+++.
T Consensus 418 ~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 418 SDFLDHQIRVYRRDG 432 (433)
T ss_dssp EETTTTEEEEEEETT
T ss_pred EECCCCeEEEEEecC
Confidence 875 99999999874
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.3e-26 Score=243.53 Aligned_cols=293 Identities=14% Similarity=0.139 Sum_probs=206.5
Q ss_pred eeEEEEe-cCCCcEEEEEEeCCCcEEEEECCCC---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC
Q 001363 444 VNDLAFS-APCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1092)
Q Consensus 444 v~~~~~s-~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 519 (1092)
+.++-|- +..+.+.+++++ ...|++|+..++ ++++++.+|..+|..+.+.|+.-+-..++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 5555553 445555677777 568999999999 8999999999999999997754332222221
Q ss_pred CceEEecCCCCceEEEEEccC----CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE
Q 001363 520 GARVDYDAPGLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1092)
Q Consensus 520 ~~~~~~~~~~~~i~~~~~s~d----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 595 (1092)
..+...|.+++++|| ++.+++++. .+.+|++.++ +.+.+
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~~g-------------------------~lv~s 150 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLTKR-------------------------RLVSS 150 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEETTT-------------------------EEEEE
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecCCC-------------------------cEEEe
Confidence 123447889999999 889988753 2666654333 33333
Q ss_pred Ee--CCCcEEEEEC-CCCceEEEEeCCCCCCCCceEEEcc---CCCEEEEEeCCCeEEEEECCCCceeeecccccCceee
Q 001363 596 AG--DDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1092)
Q Consensus 596 ~s--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 669 (1092)
++ .|+.|++|++ .+|+.+..+..+. ..+..++|++ ++.+|++++.|++|+|||+.+++.+..+.++..
T Consensus 151 s~~g~d~~V~~~~~s~dG~~~~s~~~~~--~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~---- 224 (356)
T 2w18_A 151 SGTLSDQQVEVMTFAEDGGGKENQFLMP--PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS---- 224 (356)
T ss_dssp ESSSTTCEEEEEEECTTSCEEEEEEECC--CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----
T ss_pred cccCCCCcEEEEEECCCCceeeeeccCC--CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc----
Confidence 22 4777777777 4466666666554 3578899999 789999999999999999999988877654322
Q ss_pred eeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEE
Q 001363 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1092)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 749 (1092)
+...+.+++|+|+|+.+
T Consensus 225 ---------------------------------------------------------------~v~~v~~vafSpdG~~l 241 (356)
T 2w18_A 225 ---------------------------------------------------------------YQASVCHKAYSEMGLLF 241 (356)
T ss_dssp -----------------------------------------------------------------CCCEEEEEEETTEEE
T ss_pred ---------------------------------------------------------------ceeeeEEEEECCCCCEE
Confidence 12346678899999877
Q ss_pred EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEE
Q 001363 750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLY 828 (1092)
Q Consensus 750 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iw 828 (1092)
++++.+.. + ..+++++ |++|++|
T Consensus 242 vs~s~~~~--~------------------------------------------------------w~laSGs~D~tIklW 265 (356)
T 2w18_A 242 IVLSHPCA--K------------------------------------------------------ESESLRSPVFQLIVI 265 (356)
T ss_dssp EEEC--------------------------------------------------------------------CCEEEEEE
T ss_pred EEeccCCC--c------------------------------------------------------ceeeccCCCcEEEEE
Confidence 77664311 0 1355666 7889999
Q ss_pred EcCCceeeEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeE-EEEEcCCCCEEE
Q 001363 829 IVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILV 902 (1092)
Q Consensus 829 d~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~ 902 (1092)
|..+++.+..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|+
T Consensus 266 d~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La 342 (356)
T 2w18_A 266 NPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL 342 (356)
T ss_dssp ETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred ECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE
Confidence 99999887765 356555544444 467999999999999999999999999999988665 589999999999
Q ss_pred EEeCCCcEEEEEc
Q 001363 903 SSGGDAQIFVWDV 915 (1092)
Q Consensus 903 s~s~Dg~I~iwd~ 915 (1092)
+|+.|++|+|||+
T Consensus 343 SGS~D~TIklWd~ 355 (356)
T 2w18_A 343 AGQKDGNIFVYHY 355 (356)
T ss_dssp EECTTSCEEEEEE
T ss_pred EEECCCcEEEecC
Confidence 9999999999996
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-28 Score=304.07 Aligned_cols=260 Identities=13% Similarity=0.155 Sum_probs=212.3
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
..++.+|.+.|++++|+|+|+ ++++|+.||+|+|||+.++..... ..+.+|.+.|.+++|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~ 63 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAH 63 (753)
T ss_dssp ------CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECC
T ss_pred eeecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecC
Confidence 467899999999999999998 689999999999999985432211 12778999999999999
Q ss_pred C--CCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEEEEECCCC--ceeEE
Q 001363 407 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTG--SRTYS 480 (1092)
Q Consensus 407 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~--~~~~~ 480 (1092)
+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ ++ .+++|+.||.|++||+.++ .....
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence 8 99999999999999999998752 233367789999999999999 88 8999999999999999887 34566
Q ss_pred EecCCcCeEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccC---CC
Q 001363 481 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSAN---GR 542 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~d---g~ 542 (1092)
+.+|...|.+++|++.. ++.++++|+.||.|++||++.... ...+..|...|.+++|+|+ ++
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 78899999999997742 578999999999999999988743 3467788999999999999 89
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001363 543 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1092)
++++++. ++.|++||..++... ........+...|.+++|+|+++++++++.||.|++|++.++.
T Consensus 221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999986 567999999886421 1111112234789999999999999999999999999998643
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=9.1e-28 Score=276.23 Aligned_cols=256 Identities=16% Similarity=0.250 Sum_probs=214.6
Q ss_pred eeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCC----------CCeeEEeeeeeeecccccceeeEeeecCCC
Q 001363 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS----------GQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1092)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~----------~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~ 396 (1092)
...+.+|.+.|++++|+|++..++|+|+.||.|+|||+.+ ...+. .+.+|.
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~-------------------~~~~h~ 181 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL-------------------RLRGHQ 181 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSE-------------------EEECCS
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcE-------------------EecCCC
Confidence 3556789999999999998545899999999999999986 22222 267899
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcc----cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 397 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..|.+++|+|++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++||
T Consensus 182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d 260 (430)
T 2xyi_A 182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWD 260 (430)
T ss_dssp SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEE
T ss_pred CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEE
Confidence 9999999999998 9999999999999999885432 223457789999999999995444 899999999999999
Q ss_pred CCCC---ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCC-EEEE
Q 001363 472 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFS 546 (1092)
Q Consensus 472 ~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~-~l~~ 546 (1092)
+.++ +.+..+..|...|++++|++.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++ .+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 261 TRNNNTSKPSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp TTCSCSSSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred CCCCCCCcceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 9987 5778888999999999997642 24799999999999999998 456778888999999999999996 5777
Q ss_pred EecCCCCceeEEEEeCCC--------------CeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC
Q 001363 547 CGTSKEGESFLVEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~ 610 (1092)
++. ++.|++||+.. .+.+..+.+|. ..|..++|+|+++ .+++++.||.|++|++...
T Consensus 340 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 340 SGT----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EET----TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EeC----CCcEEEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 765 56799999987 35556666666 8899999999999 8899999999999998754
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-28 Score=303.52 Aligned_cols=255 Identities=17% Similarity=0.300 Sum_probs=215.2
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecC--CCcEEEEEEeCCCcEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~ 468 (1092)
++.+|.+.|++++|+|+|++|++|+.||.|+|||+.++. ......+.+|.++|++++|+|+ ++ +|++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 377899999999999999999999999999999998532 2334478899999999999998 77 899999999999
Q ss_pred EEECCCCc--eeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEcc-----
Q 001363 469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA----- 539 (1092)
Q Consensus 469 vwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~----- 539 (1092)
+||+.+++ .+..+.+|...|.+++|++..++.++++|+.||.|++||+.... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77888899999999999876447899999999999999998873 3456677888999999999
Q ss_pred --------CCCEEEEEecCCCCceeEEEEeCCCC----eEEEEEeeccccCCceEEEEEcCC---CCEEEEEeCCCcEEE
Q 001363 540 --------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKI 604 (1092)
Q Consensus 540 --------dg~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~i 604 (1092)
++..+++++. ++.|++||..++ .....+.+|. ..|.+++|+|+ ++++++++.||.|++
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 5899999986 566999999877 5556677776 89999999999 899999999999999
Q ss_pred EECCCCceE---EEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001363 605 WDMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 605 wd~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
||+.++... .......+...|.+++|+|+|+++++++.||.|++|++..+.
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999886421 112222344578999999999999999999999999998653
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.1e-26 Score=268.31 Aligned_cols=300 Identities=12% Similarity=0.040 Sum_probs=229.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceE--EEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
..+.+++|+|++.++++++.++.|++||+.+++...... .+.+|.+.|.+++|+++++ ++++++.|+.|++||+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 456699999988888888888999999999987553211 2347888999999999998 899999999999999999
Q ss_pred CceeEEEecCCcCeEEEeecccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC-
Q 001363 475 GSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE- 552 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~- 552 (1092)
++.+..+..|...+.+++|++ ++..+ ++++.|+.|++||+++++....+.. ...+.+++|+|+|+++++++....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence 999999999999999999965 55666 5555899999999998777666654 446899999999999998874321
Q ss_pred ---CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE
Q 001363 553 ---GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1092)
Q Consensus 553 ---~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1092)
.++.|++||+.+++.+..+. +. ..+..++|+|+++.+ ++++.++.|++||+.+++.+..+... ..+.++
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~ 350 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTI 350 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEE
T ss_pred cccCCCeEEEEECCCCcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeE
Confidence 36789999999998877663 33 478899999999866 45689999999999999988888643 347899
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecccc
Q 001363 629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708 (1092)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 708 (1092)
+|+|+++++++++.+.. ..+..++++++.||
T Consensus 351 ~~s~dg~~l~~~~~~~~-------------------------------------------------~~~~~~~~~g~~dg 381 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPN-------------------------------------------------HPTEGYLKKGLVLG 381 (433)
T ss_dssp EECTTSSEEEEEECCCC-------------------------------------------------CTTTCTTSCCSSCC
T ss_pred EEcCCCCEEEEEecCCC-------------------------------------------------ccccccccccccce
Confidence 99999999988876320 01123344455555
Q ss_pred ccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeec-CCeeEEEeec
Q 001363 709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP 764 (1092)
Q Consensus 709 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~~w~~~ 764 (1092)
.+++||....+..... .....+.+++|+|+|+.+++++. ++.+++|++.
T Consensus 382 ~v~~~d~~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 382 KVYVIDTTTDTVKEFW-------EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEETTTTEEEEEE-------ECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEEECCCCcEEEEe-------cCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 5555554322211111 02345788999999998888775 8999999864
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=4e-27 Score=262.90 Aligned_cols=299 Identities=13% Similarity=0.135 Sum_probs=215.4
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
..+|...|.+++|+|||++||+|+.++ ++||++.+++... . .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 467999999999999999999998776 7899998764332 1 22235888899998884 446788889999999
Q ss_pred CCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001363 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
..+++.+..+. |...|.++++++ + .++++ .|+.|++||+.+. +....+.. +...+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 99999999887 677999999854 2 34443 5889999999887 44444333 445566777 66666522
Q ss_pred CCCceeEEEEeCCCCe----------------EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceE
Q 001363 551 KEGESFLVEWNESEGA----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLL 613 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~ 613 (1092)
..++.|++||+.++. .+..+.+|. ..|.+++|+|++++|++|+.|++ |++||+.+++.+
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCS---SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 236679999999876 266777777 89999999999999999999998 999999999999
Q ss_pred EEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee--eeccc-----ccCceeeeeecCCCccccccccCC
Q 001363 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV--DAAGV-----LSDNLRKLSVNPISTVTGAGIANG 686 (1092)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~ 686 (1092)
..+....+...|.+++|+|++++|++++.|++|++|++...... ..+.. .....++++...... .......
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 309 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV--DKHVRGC 309 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC--CTTCCCC
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc--CCCCCce
Confidence 99973223457999999999999999999999999999865321 11111 001111111000000 0001113
Q ss_pred ceeecCCCCCCCccceeeccccccceecccccc
Q 001363 687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 719 (1092)
Q Consensus 687 ~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~ 719 (1092)
.+++ ++|++.+++++.||.+++|++....
T Consensus 310 ~~a~----~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 310 KIAW----ISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEE----SSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEE----eCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 3455 6899999999999999999976443
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-27 Score=263.75 Aligned_cols=278 Identities=8% Similarity=0.053 Sum_probs=218.0
Q ss_pred EEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001363 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527 (1092)
Q Consensus 448 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 527 (1092)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+...
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 4456777 89999999999999999999988886 466777877654 99999999999998643
Q ss_pred CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcC--CCCEEEEEeCCCcEEE
Q 001363 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKI 604 (1092)
Q Consensus 528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~i 604 (1092)
.+.+||..+++.+..+. +|. ..|.+++|+| +++++++++.||+|++
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSA---NEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCS---SCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCC---CCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 27788888888766665 444 7899999999 9999999999999999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee-eecccccCceeeeeecCCCccccccc
Q 001363 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV-DAAGVLSDNLRKLSVNPISTVTGAGI 683 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (1092)
||+.+++.......+.. ..+.+++|+|++.++++|+.||.|++||+.+++.. ..+.
T Consensus 154 wd~~~~~~~~~~~~~~~-~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~---------------------- 210 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKSD-VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP---------------------- 210 (343)
T ss_dssp EESSSSCEEEEECCCSS-CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC----------------------
T ss_pred EECCCCcEEEEEecCCC-CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe----------------------
Confidence 99999998766644332 35899999999999999999999999998765221 1000
Q ss_pred cCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEee
Q 001363 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763 (1092)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~ 763 (1092)
T Consensus 211 -------------------------------------------------------------------------------- 210 (343)
T 3lrv_A 211 -------------------------------------------------------------------------------- 210 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecC--
Q 001363 764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP-- 841 (1092)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~-- 841 (1092)
. +|...|.+++|+|+|.+|++++++.|++||+.+++.+..+..
T Consensus 211 --------------------------------~---~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~ 255 (343)
T 3lrv_A 211 --------------------------------V---DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYT 255 (343)
T ss_dssp --------------------------------C---CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCB
T ss_pred --------------------------------c---cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccc
Confidence 0 166778888888888888888877899999888776555443
Q ss_pred -CCCCe--EEEEEcCCCCCEEEEEeC-CCcEEEEEcCCceeeEeeccccCCeEEEEEcC---CCCEEEEEeCCCcEEEEE
Q 001363 842 -PSPTA--TSLAFNPHDNNVIAIGMD-DSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 842 -~~~~i--~~l~~s~~d~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~l~s~s~Dg~I~iwd 914 (1092)
|...+ .+++|+| ++++|++++. |+.|+||++.++...... .++..++|++ +.+.+++++.|+.+.++-
T Consensus 256 ~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 256 IPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp C-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred cccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 33333 4699999 8999999998 999999999766533332 5678889998 889999999999999886
Q ss_pred cCC
Q 001363 915 VDG 917 (1092)
Q Consensus 915 ~~~ 917 (1092)
...
T Consensus 331 ~~~ 333 (343)
T 3lrv_A 331 KTN 333 (343)
T ss_dssp ECS
T ss_pred ecC
Confidence 554
No 124
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1e-26 Score=267.39 Aligned_cols=257 Identities=16% Similarity=0.311 Sum_probs=214.7
Q ss_pred eeEeeecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCC-------CcccceEEEcccccceeEEEEecCCCcEEE
Q 001363 387 FKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISV 458 (1092)
Q Consensus 387 ~~~~~l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l 458 (1092)
+......+|.+.|++++|+|+ +.+||+++.+|.|++||+.+. ........+.+|...|.+++|+|++.. +|
T Consensus 119 ~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l 197 (430)
T 2xyi_A 119 IEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YL 197 (430)
T ss_dssp EEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EE
T ss_pred eEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eE
Confidence 333446679999999999997 789999999999999999862 112334478899999999999999886 69
Q ss_pred EEEeCCCcEEEEECCCCce-------eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCC
Q 001363 459 ITCGDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAP 528 (1092)
Q Consensus 459 ~s~~~d~~i~vwd~~~~~~-------~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~ 528 (1092)
++|+.||.|++||+.++.. ...+.+|...|.+++|++. ++.+|++++.||.|++||++.. .....+..+
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 9999999999999988432 4667789999999999774 4579999999999999999987 456677788
Q ss_pred CCceEEEEEccCCC-EEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCcEEEE
Q 001363 529 GLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIW 605 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iw 605 (1092)
...|.+++|+|++. .+++++. ++.|++||+++ +..+..+.+|. ..|.+++|+|+++ .+++++.|+.|++|
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVW 349 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred CCCeEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence 89999999999998 4667765 67799999997 56778888877 8999999999985 68889999999999
Q ss_pred ECCC--------------CceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC
Q 001363 606 DMNK--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1092)
Q Consensus 606 d~~~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 654 (1092)
|+.. ...+.....+ ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 350 DLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred eCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9987 2455555444 45699999999999 9999999999999998753
No 125
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.3e-27 Score=270.74 Aligned_cols=265 Identities=15% Similarity=0.096 Sum_probs=219.4
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEc--------------------------------------
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------------------------------------- 438 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------------------- 438 (1092)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999977666 57789999999987221111222
Q ss_pred ----------------ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC--CCceeEEEe--cCCcCeEEEeecccCC
Q 001363 439 ----------------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKEN 498 (1092)
Q Consensus 439 ----------------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--~~~~~~~~~--~~~~~v~~i~~~~~~~ 498 (1092)
+|.+.|.+++|+|+++. ++++++.|+.|++||+. +++.+..+. .|...|.+++|++ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~ 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESR-LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--D 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSE-EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--T
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCE-EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--C
Confidence 34447999999999993 24899999999999999 888888886 5678899999965 6
Q ss_pred ccEEEEEecCCeEEEEEcCCCCceE----EecCCCCceEEEEEccC---CCEEEEEecCCCCceeEEEEeCCCCeEEEE-
Q 001363 499 IHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT- 570 (1092)
Q Consensus 499 ~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~d---g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~- 570 (1092)
+.+|++++.+|.|++|++....... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEEE
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeeee
Confidence 7899999999999999998776543 66678889999999999 999999986 56699999999988877
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----------------------CCCCCCce
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENPR 627 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~ 627 (1092)
+.+|. ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....+..
T Consensus 237 ~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 237 LFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp CCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred ecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 44666 899999999 9999999999999999999999998887632 11235789
Q ss_pred EEEccCCCEEEEEe-CCCeEEEEEC--CCC---ceeeecccccCceeeeeecC
Q 001363 628 ICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNP 674 (1092)
Q Consensus 628 v~~s~~~~~l~~~~-~dg~i~iw~~--~~~---~~~~~~~~~~~~v~~~~~~~ 674 (1092)
++|+|+++++++++ .++.|++|++ ..+ ..+..+..+ ..+.+++++|
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence 99999999999999 8999999999 555 556666666 7888999985
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.3e-28 Score=267.70 Aligned_cols=271 Identities=10% Similarity=0.056 Sum_probs=213.0
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
..+.+|++ ++++|+.||+|++||+.+++.+... . ...|.+++|+|+ +++++.|++
T Consensus 42 ~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~-------------------~--~~~v~~~~~~~~---~~s~s~D~~ 96 (343)
T 3lrv_A 42 KSMYYDKW-VCMCRCEDGALHFTQLKDSKTITTI-------------------T--TPNPRTGGEHPA---IISRGPCNR 96 (343)
T ss_dssp SSSSEEEE-EEEEEEETTEEEEEEESSSSCEEEE-------------------E--EECCCTTCCCCS---EEEECSTTE
T ss_pred hhhcCCCC-EEEEECCCCcEEEEECCCCcEEEEE-------------------e--cCCceeeeeCCc---eEEecCCCe
Confidence 34556776 7999999999999999999877641 1 356778889998 999999999
Q ss_pred EEEEEcc---------CCCcccceEEEcccccceeEEEEec--CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcC
Q 001363 420 VQLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP 487 (1092)
Q Consensus 420 i~iwd~~---------~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~ 487 (1092)
|++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++++.|++|++||+++++.+..... |...
T Consensus 97 i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 97 LLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp EEEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred EEEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 9999766 3332221 1226778999999999 999 899999999999999999998776644 5568
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-EEecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
|.+++|++ ++.+|++|+.||.|++||+++.... ..+.. |..+|.+++|+|+|.+|++++. + .|++||++++
T Consensus 173 i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~----~-~v~iwd~~~~ 245 (343)
T 3lrv_A 173 YSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD----Q-TVVCFDLRKD 245 (343)
T ss_dssp CCEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES----S-BEEEEETTSS
T ss_pred eEEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC----C-eEEEEEcCCC
Confidence 99999965 7789999999999999999998887 67777 8899999999999999999983 2 6999999998
Q ss_pred eEEEEEeeccccCCce--EEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc---CCCEEEE
Q 001363 566 AIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLAV 639 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~ 639 (1092)
+.+..+..+..+...+ .+++|+|+++++++++. |+.+++|++.+....... ..+..++|++ +...+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 8766655422111333 46999999999999998 999999999765433322 1245677887 8889999
Q ss_pred EeCCCeEEEEECC
Q 001363 640 IANENRIKILETP 652 (1092)
Q Consensus 640 ~~~dg~i~iw~~~ 652 (1092)
++.||.+.++-..
T Consensus 320 ~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 320 VCGDGGIAAILKT 332 (343)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEec
Confidence 9999999887543
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1e-25 Score=264.42 Aligned_cols=345 Identities=11% Similarity=0.091 Sum_probs=246.4
Q ss_pred eecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeec-CCCCcEEEEEECCCCCEEEEEeCCCE
Q 001363 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 341 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
+|+|++. ++++++.|++|.+||..+++.+.+ +. ++. +..++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 4899986 789999999999999999998765 33 343 889999999999999999999
Q ss_pred EEEEEc--cCCCcccceEEEcccccceeEEEEec----CCCcEEEEEEe-CCCcEEEEECCCCceeEEEecCCcCeEEEe
Q 001363 420 VQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSA----PCKQISVITCG-DDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1092)
Q Consensus 420 i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~----d~~~l~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~ 492 (1092)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+||..+++++..+..+...+....
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7765544 454 344679999999 999 566665 589999999999999888764322111111
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE--E
Q 001363 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--T 570 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~ 570 (1092)
++ +...+..+.++|++..+++... +++.|.+||..+++.+. .
T Consensus 276 ~~---------------------------------~~~~v~~i~~s~~~~~~~vs~~---~~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 276 YH---------------------------------PEPRVAAIIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EE---------------------------------SCCCEEEEEECSSSSEEEEEET---TTTEEEEEECTTSSSCEEEE
T ss_pred cc---------------------------------cCCceEEEEECCCCCEEEEEEC---CCCeEEEEEecCCCcceeEE
Confidence 11 1124667788888777665542 36678888887765433 2
Q ss_pred EeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEE-EccC-CCEEEEEe-CCCeE
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKN-GTLLAVIA-NENRI 646 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~-~~~l~~~~-~dg~i 646 (1092)
+. +. ..+..+.|+|+++++++++ .+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|
T Consensus 320 i~-~~---~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 320 IG-AA---PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI 395 (543)
T ss_dssp EE-CC---SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred ec-cC---cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceE
Confidence 22 22 5677899999999887665 68899999999999998887532111112223 4676 55566654 57899
Q ss_pred EEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccc
Q 001363 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1092)
Q Consensus 647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~ 726 (1092)
.+|+..+.. |..
T Consensus 396 ~v~d~~~~~-------~~~------------------------------------------------------------- 407 (543)
T 1nir_A 396 SLIGTDPKN-------HPQ------------------------------------------------------------- 407 (543)
T ss_dssp EEEECCTTT-------CTT-------------------------------------------------------------
T ss_pred EEEEeCCCC-------Cch-------------------------------------------------------------
Confidence 999987520 000
Q ss_pred ccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001363 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~ 806 (1092)
+...+ +.... .|...+.
T Consensus 408 ------~~~~~-----------------------------------------------------v~~l~----~~g~~~~ 424 (543)
T 1nir_A 408 ------YAWKK-----------------------------------------------------VAELQ----GQGGGSL 424 (543)
T ss_dssp ------TBTSE-----------------------------------------------------EEEEE----CSCSCCC
T ss_pred ------hcCeE-----------------------------------------------------EEEEE----cCCCCce
Confidence 00000 00000 1344556
Q ss_pred EEEEecCCCEEEEEe--------CCeEEEEEcCCceee-EEe--------cCCCCCeEEEEEcCCCCCEEEEEe-----C
Q 001363 807 CFALSKNDAYLFSAS--------GGVISLYIVMTFKTI-LTI--------MPPSPTATSLAFNPHDNNVIAIGM-----D 864 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s--------dg~i~iwd~~~~~~~-~~~--------~~~~~~i~~l~~s~~d~~~lasg~-----~ 864 (1092)
.++++|||++|++++ +++|.+||+.+++.. ..+ ..+...+..++|+| +|+.|+++. .
T Consensus 425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~ 503 (543)
T 1nir_A 425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKND 503 (543)
T ss_dssp CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTS
T ss_pred EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCC
Confidence 778889999888876 468999999998877 443 35667899999999 888888663 4
Q ss_pred CCcEEEEEcCCceeeEeeccc
Q 001363 865 DSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 865 dg~v~iwd~~~~~~~~~l~~h 885 (1092)
|+.|.|||..+++++.+++.+
T Consensus 504 ~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 504 SSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp CCEEEEEETTTTEEEEEECCT
T ss_pred CCeEEEEECCCceEEEeecCC
Confidence 799999999999999998854
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=4.7e-26 Score=267.17 Aligned_cols=343 Identities=9% Similarity=0.086 Sum_probs=257.2
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCceE
Q 001363 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL 613 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~--~~~~~~ 613 (1092)
+++|++..++++.. ++.|.+||..+++++..+.... .+..++|+|+++++++++.|++|++||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 37888887777654 6779999999999999988544 3889999999999999999999999999 888888
Q ss_pred EEEeCCCCCCCCceEEEcc----CCCEEEEEeC-CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCce
Q 001363 614 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1092)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 688 (1092)
..+... ..+..++|+| +|+++++++. +++|.+||..+++.+..+..+...+....+.
T Consensus 216 ~~i~~g---~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~--------------- 277 (543)
T 1nir_A 216 AEIKIG---IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH--------------- 277 (543)
T ss_dssp EEEECC---SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE---------------
T ss_pred EEEecC---CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc---------------
Confidence 888743 2468999999 9999999885 8999999999887776554221100000000
Q ss_pred eecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEE-EeecCCeeEEEeecCCC
Q 001363 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-ALASNGVHLMWRWPRND 767 (1092)
Q Consensus 689 ~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-~~~~dg~i~~w~~~~~~ 767 (1092)
....+.++.+++++..++ +...++.|.+|++....
T Consensus 278 --------------------------------------------~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 278 --------------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp --------------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred --------------------------------------------cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 123678899999776654 45557899998875431
Q ss_pred cCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC----
Q 001363 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP---- 841 (1092)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~---- 841 (1092)
. +....+ .+...+..++|+|||+++++++ +++|.+||..+++++..+..
T Consensus 314 ~----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 314 N----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp S----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred c----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 1 110011 1345577899999999887765 68999999999999888764
Q ss_pred CCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcCC-------ceeeEeeccccCCeEEEEEcCCCCEEEEEe-------C
Q 001363 842 PSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------G 906 (1092)
Q Consensus 842 ~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-------~ 906 (1092)
|.+....+ ++|+++.+++++. .|++|.+||+.+ +++++++.+|.+.+..++|+||+++|++++ .
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 55444443 5774477778776 689999999998 899999999999999999999999999987 2
Q ss_pred CCcEEEEEcCCCcee-eeeeeecCCCCcCCCCCceEEEEccCCCEEEEE------eCCcEEEEEcCCceeeeeec
Q 001363 907 DAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 974 (1092)
Q Consensus 907 Dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~------~d~~i~lwd~~~~~~~~~~~ 974 (1092)
+++|.|||+.+++.. ....+....+.......+..++|+|||+.+.++ .++.|.|||..+++++..+.
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 779999999998754 211111100001112368999999999999874 26899999999999988744
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.6e-27 Score=270.18 Aligned_cols=276 Identities=7% Similarity=-0.019 Sum_probs=179.7
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC-
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp- 406 (1092)
.....|...+....+++++. ++|+|+.|++|+|||+.+++......+ ..+.+|.+.|.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~ 147 (393)
T 4gq1_A 83 YSENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADV 147 (393)
T ss_dssp EECC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEE
T ss_pred ccccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEccc
Confidence 44456666666777777776 799999999999999998876543111 23789999999999998
Q ss_pred -------CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 407 -------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 407 -------dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++++.|++|++||+.+++...
T Consensus 148 ~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~ 223 (393)
T 4gq1_A 148 YSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAE 223 (393)
T ss_dssp ECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC---
T ss_pred cccccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccc
Confidence 89999999999999999998875443 56678999999999999864 79999999999999999998876
Q ss_pred EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEc-cCCCEEEEEecCCCCceeEE
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~~~~~i~ 558 (1092)
....+.......++.... . ..........+...+.++.|+ +|++.+++++. ++.++
T Consensus 224 ~~~~~~~~~~~~~~s~~~----------~---------~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~ 280 (393)
T 4gq1_A 224 ENSQTELVKNPWLLTLNT----------L---------PLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWL 280 (393)
T ss_dssp -------CSCCCSEEEES----------G---------GGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEE
T ss_pred cccccCCcccceEEeccc----------c---------cceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEE
Confidence 665444333222221111 1 111111223456678888886 79999999876 66799
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEE------------------EEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 559 EWNESEGAIKRTYQGLQLQHNSVSVV------------------HFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~------------------~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
+||+.++.....+..+. ..+..+ .++| ++.++++|+.||+|++||+.+++....+..
T Consensus 281 vwd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~ 357 (393)
T 4gq1_A 281 RWNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ 357 (393)
T ss_dssp EEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred EEECccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence 99999887766665544 222222 2333 233556688999999999999988777665
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 619 GGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
+. ..|.+++|+|||++||+++.+| +.+|.+
T Consensus 358 ~~--~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 358 LG--MPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CS--SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CC--CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 53 3699999999999999998766 555554
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=6.7e-27 Score=265.09 Aligned_cols=322 Identities=14% Similarity=0.087 Sum_probs=202.3
Q ss_pred cCCCceEEEEEcCCCcEEEEecCCCCe-----eEEeeeeeeecccccce-----eeEeeecCCCCcEEEEEECCCCCEEE
Q 001363 343 HPVQHTLLLVGTNVGDTGLWDVNSGQK-----LFIRNFKVWDIGACSML-----FKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 343 spdg~~llasg~~dg~i~iwd~~~~~~-----~~~~~~~~~d~~~~~~~-----~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
+|++..+++.| .++.|.+|+...... ........|+....... ........|...+....+++++.+||
T Consensus 27 ~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 105 (393)
T 4gq1_A 27 SPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLA 105 (393)
T ss_dssp SGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEE
T ss_pred CCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEE
Confidence 56665566666 468899997643211 11111222221111000 00112334555556666677888999
Q ss_pred EEeCCCEEEEEEccCCCcccc--eEEEcccccceeEEEEec--------CCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001363 413 VAYSKHIVQLYAYHGGSDARQ--QLEIDAHVGNVNDLAFSA--------PCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~--~~~~~~h~~~v~~~~~s~--------d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~ 482 (1092)
+++.|++|+|||..+++.... ...+.+|.+.|++++|+| |++ +|+||+.|++|+|||+.++.++..+.
T Consensus 106 s~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~~~~~~~~~~~ 183 (393)
T 4gq1_A 106 CVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRLTDEGPILAGY 183 (393)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred EEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEECCCCceeeeec
Confidence 999999999999998765332 223679999999999998 787 89999999999999999999888888
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
+|..+|.+++|+|. +..+|++++.||+|++||+.+.........+.......+++++.
T Consensus 184 ~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~--------------------- 241 (393)
T 4gq1_A 184 PLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT--------------------- 241 (393)
T ss_dssp ECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES---------------------
T ss_pred CCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc---------------------
Confidence 99999999999764 23589999999999999998876654433322211111111111
Q ss_pred CCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC----------------CCCC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----------------LPEN 625 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v 625 (1092)
..........+|. ..+.++.|. |+++.+++++.|+++++||+..+.....+..+.. ....
T Consensus 242 ~~~~~~~~~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (393)
T 4gq1_A 242 LPLVNTCHSSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL 318 (393)
T ss_dssp GGGC------CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCS
T ss_pred ccceeeeeccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcc
Confidence 1111111223444 678888886 8999999999999999999988766554432211 1112
Q ss_pred ceEEEcc--CCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCcccee
Q 001363 626 PRICFNK--NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703 (1092)
Q Consensus 626 ~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 703 (1092)
....|+| ++.++++|+.||.|++||..++........|...|.+++|+ |||++|++
T Consensus 319 ~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafs----------------------pdG~~LA~ 376 (393)
T 4gq1_A 319 LGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWH----------------------QDGSHLAI 376 (393)
T ss_dssp SCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEEC----------------------TTSSEEEE
T ss_pred eeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEc----------------------CCCCEEEE
Confidence 2344444 44567778889999999999998888888899999999996 78899998
Q ss_pred eccccccceecc
Q 001363 704 VEAENKSEVEKP 715 (1092)
Q Consensus 704 ~~~d~~i~lw~~ 715 (1092)
++.+| +.+|++
T Consensus 377 as~~G-v~lvrL 387 (393)
T 4gq1_A 377 ATEGS-VLLTRL 387 (393)
T ss_dssp EESSE-EEEEEE
T ss_pred EeCCC-eEEEEE
Confidence 87765 545543
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=3.5e-25 Score=252.30 Aligned_cols=307 Identities=9% Similarity=0.033 Sum_probs=241.7
Q ss_pred CCCceEEeecCCCceEEEEEc----CCC----cEEEEec--CCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~----~dg----~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...|...+|++.|..++++|+ .|| +|+|||+ .+++.+.... +.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHH
Confidence 358899999999987888886 457 8999999 8988764322 556777777777
Q ss_pred ECC--------------CCCEEEEEeCC------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC
Q 001363 404 WSP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1092)
Q Consensus 404 ~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~ 463 (1092)
+++ .+..+++++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 764 26677776654 799999998543 33 5678999999999999999 7888887
Q ss_pred CC---cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEE-EEecCCe--EEEEEcCCCCceEEecCCCCceEEEEE
Q 001363 464 DK---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1092)
Q Consensus 464 d~---~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~ 537 (1092)
++ .|++||+.+++.. .+..|...+.+++|+| ||+.|+ +++.++. |++||+.+++. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 9999999999875 5667888999999965 667776 6666665 99999987654 556667778999999
Q ss_pred ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEE
Q 001363 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLT 614 (1092)
Q Consensus 538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~ 614 (1092)
+|||++|++++.. ++...|++||..+++.. .+..+. ..+..++|+|++++|++++.+ ..|++||+.+++..
T Consensus 275 spdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~- 348 (415)
T 2hqs_A 275 FPDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 348 (415)
T ss_dssp CTTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-
T ss_pred CCCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-
Confidence 9999999988742 23557999999888743 333333 678899999999999987754 58999999998874
Q ss_pred EEeCCCCCCCCceEEEccCCCEEEEEeCCC---eEEEEECCCCceeeecccccCceeeeeecCCCc
Q 001363 615 TIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677 (1092)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 677 (1092)
.+..+ ..+..++|+|+|++|++++.++ .|++|++. +.....+..+...|.+++|+|...
T Consensus 349 ~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 349 VLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 34333 2588999999999999988876 79999987 556777888999999999997643
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1e-23 Score=240.17 Aligned_cols=306 Identities=13% Similarity=0.115 Sum_probs=228.7
Q ss_pred ccceeEEEEecCCCcEEEEEEe----CCC----cEEEEEC--CCCcee--EEEecCCcCeEEEeeccc------------
Q 001363 441 VGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK------------ 496 (1092)
Q Consensus 441 ~~~v~~~~~s~d~~~l~l~s~~----~d~----~i~vwd~--~~~~~~--~~~~~~~~~v~~i~~~~~------------ 496 (1092)
...+...+|++.|.. ++++|+ .|| +|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 356788899999876 666776 567 8999999 999987 558899988887776531
Q ss_pred CCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001363 497 ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1092)
Q Consensus 497 ~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1092)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 113466666654 7999999975 44556666778899999999999999988543 2468999999998875 4
Q ss_pred EeeccccCCceEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC-CC--
Q 001363 571 YQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN-- 644 (1092)
Q Consensus 571 ~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg-- 644 (1092)
+..+. ..+.+++|+|+++.|+ +++.++. |++||+.+++. ..+..+ ...+.+++|+|||++|++++. ++
T Consensus 218 l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 218 VASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCCc
Confidence 55555 6899999999999888 5666654 99999998876 344333 345789999999999988876 34
Q ss_pred eEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccc
Q 001363 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 724 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~ 724 (1092)
.|++|+..+++... +
T Consensus 292 ~i~~~d~~~~~~~~-l---------------------------------------------------------------- 306 (415)
T 2hqs_A 292 QVYKVNINGGAPQR-I---------------------------------------------------------------- 306 (415)
T ss_dssp EEEEEETTSSCCEE-C----------------------------------------------------------------
T ss_pred EEEEEECCCCCEEE-E----------------------------------------------------------------
Confidence 45555654331100 0
Q ss_pred ccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001363 725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 804 (1092)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~ 804 (1092)
. .+...
T Consensus 307 ------------------------------------------------------------------------~--~~~~~ 312 (415)
T 2hqs_A 307 ------------------------------------------------------------------------T--WEGSQ 312 (415)
T ss_dssp ------------------------------------------------------------------------C--CSSSE
T ss_pred ------------------------------------------------------------------------e--cCCCc
Confidence 0 02234
Q ss_pred eeEEEEecCCCEEEEEe-C---CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---cEEEEEcCCce
Q 001363 805 VPCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSE 877 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~~ 877 (1092)
+.+++|+|||++|++++ + ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++ .|++||+. +.
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~ 388 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GR 388 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SC
T ss_pred ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CC
Confidence 55677788888777765 2 47999999988763 455554 899999999 899999888877 79999987 56
Q ss_pred eeEeeccccCCeEEEEEcCCCC
Q 001363 878 VISKLEGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 878 ~~~~l~~h~~~V~~l~~spdg~ 899 (1092)
....+.+|.+.|.+++|+|.-+
T Consensus 389 ~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 389 FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CEEECCCSSSEEEEEEECCCCC
T ss_pred cEEEeeCCCCCCcCCccccccc
Confidence 6788899999999999999653
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=2.4e-23 Score=258.18 Aligned_cols=303 Identities=14% Similarity=0.081 Sum_probs=213.5
Q ss_pred CCCceEEeecCCCceEEEEEcC-CC-----cEEEEecCCCCeeEEeeeeeeecccc-----cceeeEeeecCCCCcEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWDIGAC-----SMLFKTALVRDPGVSVNRV 402 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~-dg-----~i~iwd~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~l~~h~~~V~~l 402 (1092)
...|.+++|||||++ |++++. |+ +|++||+.+++........-...... ........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 347999999999994 677766 87 89999999998665321100000000 0000000000000347899
Q ss_pred EECCCCCEEEEEeCCCEEEEEEccCCC--cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 403 VWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|++||+.+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999987 899999999872 232 3567888899999999999 677776 56999999999887655
Q ss_pred EecCCcC----------------eEEEeecccCCccEEEEEecCC---------------------------------eE
Q 001363 481 FEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------KI 511 (1092)
Q Consensus 481 ~~~~~~~----------------v~~i~~~~~~~~~~l~s~~~dg---------------------------------~i 511 (1092)
...+... +.+++| ++||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 5444432 366777 45778899888765 78
Q ss_pred EEEEcCC-CCceEEec--CCCCceEEEEEccCCCEEEEEec-CCCCceeEEEEeCCCCeEEEEEeeccccCC---ceEEE
Q 001363 512 KAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVV 584 (1092)
Q Consensus 512 ~vwd~~~-~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~ 584 (1092)
.+||+.+ ++...... .+...+..++| |||++|++... ....+..|++||..+++....+..+. .. .+..+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~ 342 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNSL 342 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSCC
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCce
Confidence 8899987 76554433 35567899999 99999997764 22346789999999999887776654 12 34678
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECC-CCceEEEEeCCCCCCCCceE-EEccCCCEEEEEeC-CC--eEEEEECC
Q 001363 585 HFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETP 652 (1092)
Q Consensus 585 ~~~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~-dg--~i~iw~~~ 652 (1092)
+|+|||+.+++++.+|.+++|.+. ++. ...+..+ ...+..+ +|+|+|+.++..+. ++ .+++|++.
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 999999988889999988888765 344 5555433 2346666 59999997765544 44 78888865
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=6e-23 Score=254.69 Aligned_cols=241 Identities=9% Similarity=0.067 Sum_probs=172.4
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCC----------------eEEEEEcCCCCCEEEEEeC
Q 001363 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT----------------ATSLAFNPHDNNVIAIGMD 864 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~----------------i~~l~~s~~d~~~lasg~~ 864 (1092)
+...+.+++|||||++|++++++.|++||+.+++.......+... +.+++||| |+++|++++.
T Consensus 150 ~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~ 228 (741)
T 2ecf_A 150 GEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARI 228 (741)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEE
T ss_pred CCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEE
Confidence 455678889999999999988889999999888776554444332 47899999 8999999887
Q ss_pred CC---------------------------------cEEEEEcCC-ceeeEeec--cccCCeEEEEEcCCCCEEEEEeC--
Q 001363 865 DS---------------------------------TILIYNARS-SEVISKLE--GHSKRVTGLVFSDALNILVSSGG-- 906 (1092)
Q Consensus 865 dg---------------------------------~v~iwd~~~-~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~-- 906 (1092)
|+ .|++||+.+ ++...... .|...+..++| |||++|++++.
T Consensus 229 d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~ 307 (741)
T 2ecf_A 229 DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSR 307 (741)
T ss_dssp ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEET
T ss_pred cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecc
Confidence 65 889999998 87655443 47888999999 99999997764
Q ss_pred ---CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcC-CceeeeeeccCCCCCE
Q 001363 907 ---DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE-ELTCLKQWFPISSVPI 981 (1092)
Q Consensus 907 ---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~-~~~~~~~~~~~h~~~v 981 (1092)
+..|++||+.+++.... +....... -..+..++|+|||++++++ .++.+.||.+. ++. ... +..|...|
T Consensus 308 ~~~~~~i~~~d~~~g~~~~~--~~~~~~~~--~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~-l~~~~~~v 381 (741)
T 2ecf_A 308 DQKKLDLVEVTLASNQQRVL--AHETSPTW--VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA-LTHGNWSV 381 (741)
T ss_dssp TSSEEEEEEEETTTCCEEEE--EEEECSSC--CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE-SCCSSSCE
T ss_pred cCCeEEEEEEECCCCceEEE--EEcCCCCc--CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee-eeecceEE
Confidence 56799999998764432 22111100 0124678999999977774 56777777765 344 443 55677788
Q ss_pred EEE-EEecCCCEEEEEE-CCC--cEEEEEcCC-CceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCC----
Q 001363 982 SQA-TFSCDCRMVFTSF-VDG--TLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN---- 1052 (1092)
Q Consensus 982 ~~l-~fs~dg~~l~t~~-~Dg--~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d---- 1052 (1092)
..+ .|||||+.|++.+ .++ .++||++.. +.....+.. ...+ ..++|+| |+.+|++...+
T Consensus 382 ~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~---------~~~~--~~~~~sp-dg~~l~~~~~~~~~p 449 (741)
T 2ecf_A 382 DELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK---------APGM--HSASFAR-NASVYVDSWSNNSTP 449 (741)
T ss_dssp EEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC---------SCSE--EEEEECT-TSSEEEEEEEETTEE
T ss_pred EeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc---------CCCc--eEEEECC-CCCEEEEEecCCCCC
Confidence 887 5999999876554 444 899999875 544444431 1123 3688999 57777766554
Q ss_pred CcEEEEecC
Q 001363 1053 GEVYVIEPN 1061 (1092)
Q Consensus 1053 g~v~~w~~~ 1061 (1092)
+.+++|+..
T Consensus 450 ~~~~l~~~~ 458 (741)
T 2ecf_A 450 PQIELFRAN 458 (741)
T ss_dssp EEEEEEETT
T ss_pred CeEEEEEcC
Confidence 468889874
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=2.8e-23 Score=256.90 Aligned_cols=310 Identities=9% Similarity=0.088 Sum_probs=222.3
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC---cEEEEEECCCCCEEE
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG 412 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~~la 412 (1092)
.+.+++|||||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 578899999998 5666 6889999999999986643 445554 499999999999999
Q ss_pred EEeCC---------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001363 413 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1092)
Q Consensus 413 s~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 483 (1092)
+++.+ +.+.+||+.+++. ..+....+|...+..++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99764 7889999999875 22212334555689999999999 5777664 7999999999988776655
Q ss_pred CCcCe------------------EEEeecccCCccEEEEEecCC----------------------------------eE
Q 001363 484 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI 511 (1092)
Q Consensus 484 ~~~~v------------------~~i~~~~~~~~~~l~s~~~dg----------------------------------~i 511 (1092)
+...+ .+++| ++||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 67778 45778898887653 79
Q ss_pred EEEEcCCCCceEEecCC------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce----
Q 001363 512 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV---- 581 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---- 581 (1092)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||..+++....+..+. ...+
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~ 308 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN 308 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence 99999887765555543 45788999999999987776554456789999999998877665543 1333
Q ss_pred EEEEEcCCCCEEEE--EeCCC------cEEEEE-CCCCce--EEEEeCCCCCCCCce-EEEccCCCEEEEEeCC---CeE
Q 001363 582 SVVHFDTAKDQILA--AGDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI 646 (1092)
Q Consensus 582 ~~~~~~~~~~~l~~--~s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i 646 (1092)
..++|+|||+.|+. +..++ .|++|| ..++.. ...+... . ..+.. ++|+|||+.|+..+.+ +.+
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~ 386 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence 37899999998775 44666 577777 344441 3333321 1 22343 6899999999877665 789
Q ss_pred EEEECCCCc--eeeeccc---ccCceeeeeecCCC
Q 001363 647 KILETPESN--SVDAAGV---LSDNLRKLSVNPIS 676 (1092)
Q Consensus 647 ~iw~~~~~~--~~~~~~~---~~~~v~~~~~~~~~ 676 (1092)
++|++.... ....+.. +...+..++++|++
T Consensus 387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg 421 (723)
T 1xfd_A 387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM 421 (723)
T ss_dssp EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred EEEEEeCCCCCCcceecccccCCCCeEEEEECCCC
Confidence 999986432 2333332 34456666666433
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1e-22 Score=251.99 Aligned_cols=385 Identities=11% Similarity=0.084 Sum_probs=255.1
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---------Cc
Q 001363 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV 601 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~ 601 (1092)
.+.+++|+|||+++++ +. ++.|++||..+++....+..+......+..++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997755 32 5579999999999887777655211248999999999999998764 78
Q ss_pred EEEEECCCCceEEEEeC-CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccc
Q 001363 602 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1092)
Q Consensus 602 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1092)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|+..+++.......+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------------- 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------------- 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence 88999999887 33332 222234788999999999999987 799999998775544332211110
Q ss_pred ccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-CeeE
Q 001363 681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL 759 (1092)
Q Consensus 681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~ 759 (1092)
+..|.. -|-.. ..-...+.+++|||||+.|++++.+ +.+.
T Consensus 158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~ 198 (723)
T 1xfd_A 158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP 198 (723)
T ss_dssp --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence 000000 00000 0011245789999999999888765 4667
Q ss_pred EEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe
Q 001363 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 839 (1092)
Q Consensus 760 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~ 839 (1092)
+|++.... + .+...+..+.|+++|.. ..+..|++||+.+++....+
T Consensus 199 ~~~~~~~~--------------------~-----------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 199 IMELPTYT--------------------G-----------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp EEEECCCS--------------------S-----------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEEC
T ss_pred eEEeeccC--------------------C-----------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEe
Confidence 77654211 0 02234677888888763 12357999999998876666
Q ss_pred cCC------CCCeEEEEEcCCCCCEEEEEeC----CCcEEEEEcCCceeeEeecc-ccCCeE----EEEEcCCCCEEEE-
Q 001363 840 MPP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEG-HSKRVT----GLVFSDALNILVS- 903 (1092)
Q Consensus 840 ~~~------~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~~~~~l~~-h~~~V~----~l~~spdg~~l~s- 903 (1092)
..+ ...+..++||| |+++|++... +..|++||+.++++...+.. |.+.+. .++|||||+.|+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred eCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 654 56789999999 8888877653 35899999999987766654 334443 7899999998775
Q ss_pred -EeCCC------cEEEEE-cCCCceeeeeeeecC-CCCcCCCCCceE-EEEccCCCEEEE-EeC---CcEEEEEcCCce-
Q 001363 904 -SGGDA------QIFVWD-VDGWGIQTCRSLQTP-DGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT- 968 (1092)
Q Consensus 904 -~s~Dg------~I~iwd-~~~~~~~~~~~~~~~-~~~~~~~~~v~~-l~~s~dg~~la~-~~d---~~i~lwd~~~~~- 968 (1092)
...++ .|.+|| ..+++.. +.... .+.. .+.. ++|||||+.|+. +.+ +.++||++....
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred EecccCCCcceeEEEEEeccCCCCcc---ceeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 44666 466677 3333200 01111 1222 2444 699999999986 444 679999986432
Q ss_pred -eeeeeccC--CCCCEEEEEEecCCCEEEEEECC-C--cEEEEEcCCCceEEee
Q 001363 969 -CLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 969 -~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~D-g--~i~vwd~~~~~~~~~~ 1016 (1092)
....+... |...+..++|||||++|+..... + ...+++..++..+..+
T Consensus 397 ~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 397 FNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp CCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 23322222 67778999999999988865432 2 3455676666554433
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=2.3e-21 Score=214.72 Aligned_cols=280 Identities=10% Similarity=0.065 Sum_probs=206.7
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeC-CC
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH 418 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~-d~ 418 (1092)
..|.+++++++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777887899999999999999999987754 22345566 9999999998777765 88
Q ss_pred EEEEEEccCCCc-ccceEEEcccccceeEEEEecCCCcEEEEEEeCC-C--cEEEEECCCCceeEEEecCCcCeEEEeec
Q 001363 419 IVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 419 ~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 494 (1092)
.|.+||+.+++. .. .+..+..+..+++|+|||+ +++++..+ + .|.+||+.+++.+..+..+. ...+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEEC
Confidence 999999999875 33 4555666665599999999 56655544 3 89999999999988876544 45788886
Q ss_pred ccCCcc-EEEEEecCCe-EEEEEcCCCCceE----EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE-
Q 001363 495 AKENIH-FIFSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI- 567 (1092)
Q Consensus 495 ~~~~~~-~l~s~~~dg~-i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~- 567 (1092)
+ +++ ++++...++. |.+|+++...... ...........++|+|||++++++.. .++.|.+||+.+++.
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 5 555 4455566688 9999998655432 22233456789999999998777653 256799999999887
Q ss_pred --EEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--EEEEeCC----CC-CCCCceEEEccCCCEE
Q 001363 568 --KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLL 637 (1092)
Q Consensus 568 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l 637 (1092)
+..+... ..+..++|+|+++++++++ .++.|.+||..+++. +..+... .. ......++|+|+|++|
T Consensus 212 ~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 287 (331)
T 3u4y_A 212 TLLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL 287 (331)
T ss_dssp EEEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE
T ss_pred ceeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEE
Confidence 6666543 4678899999999887665 578899999999887 4444322 11 1112458999999988
Q ss_pred EEEeC-CCeEEEEECCCC
Q 001363 638 AVIAN-ENRIKILETPES 654 (1092)
Q Consensus 638 ~~~~~-dg~i~iw~~~~~ 654 (1092)
++++. ++.|.+|++...
T Consensus 288 ~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 288 FISANISRELKVFTISGK 305 (331)
T ss_dssp EEEETTTTEEEEEETTSC
T ss_pred EEecCCCCcEEEEEecCC
Confidence 76665 579999999865
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=5.3e-21 Score=235.60 Aligned_cols=238 Identities=9% Similarity=-0.002 Sum_probs=166.0
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcc-cceEEEcccc-----------------cceeEEEEecCCCcEEEEE
Q 001363 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT 460 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~-----------------~~v~~~~~s~d~~~l~l~s 460 (1092)
+..+.|+ |+.+++++.++ | +||+.+|+.+ .. +..|. ..|.+++|||| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4457788 66777777888 8 9999998763 32 22332 46999999999 5 3443
Q ss_pred EeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-----CCceEEecCCCCc----
Q 001363 461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG---- 531 (1092)
Q Consensus 461 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~---- 531 (1092)
+. ++.|++||+.+++... +..+...+.+++|+| ||+.|+++ .++.|++||+.+ ++...........
T Consensus 98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred EE-CCEEEEEECCCCceEE-ccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 33 5999999999887654 445677788888854 77888884 789999999988 6655443333332
Q ss_pred ----------eEEEEEccCCCEEEEEecC-----------------------------CCCceeEEEEeCCCCeEEEEEe
Q 001363 532 ----------CTRMAYSANGRRLFSCGTS-----------------------------KEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 532 ----------i~~~~~s~dg~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
+.+++|+|||++|++++.+ ...+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 4789999999999988732 1245789999999988765443
Q ss_pred eccccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEe-CCC--CCCCCceEEEcc--CCCEEEEEeC
Q 001363 573 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AGG--GLPENPRICFNK--NGTLLAVIAN 642 (1092)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~v~~s~--~~~~l~~~~~ 642 (1092)
... +...+..++|+||++++++++.++ .|++||+.+++....+. ... ....+..++|+| ||++++++..
T Consensus 253 ~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 253 GEP-KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CSC-TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CCC-CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 211 236789999999999999987665 89999999984333332 111 111246788999 8888888877
Q ss_pred CCeEEEEECC
Q 001363 643 ENRIKILETP 652 (1092)
Q Consensus 643 dg~i~iw~~~ 652 (1092)
++.+++|.+.
T Consensus 332 ~g~~~l~~~~ 341 (706)
T 2z3z_A 332 DGWNHLYLYD 341 (706)
T ss_dssp TSSCEEEEEE
T ss_pred CCccEEEEEE
Confidence 7777777654
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2e-21 Score=239.48 Aligned_cols=243 Identities=11% Similarity=0.087 Sum_probs=170.5
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCC-----ceeeEEecCCCCC--------------eEEEEEcCCCCCEEEEEe-
Q 001363 804 AVPCFALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPT--------------ATSLAFNPHDNNVIAIGM- 863 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~-----~~~~~~~~~~~~~--------------i~~l~~s~~d~~~lasg~- 863 (1092)
.+.+++|||||++|+++.++.|++||+.+ ++.......+... +.+++||| |+++|++++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~ 200 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM 200 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence 34556788888888877778888888877 6655444433332 48999999 899999987
Q ss_pred --------------------------------CCCcEEEEEcCCceeeEeec--cccCCeEEEEEcCCCCEEEEEeCCC-
Q 001363 864 --------------------------------DDSTILIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDA- 908 (1092)
Q Consensus 864 --------------------------------~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg- 908 (1092)
.+..|++||+.+++...... .|...+.+++|+|||++|++++.++
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 44689999999988655442 4777899999999999999988776
Q ss_pred ----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEcc--CCCEEEEE-eCCcEEEEEcC-CceeeeeeccCCCCC
Q 001363 909 ----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFLLV-HETHLAIYEAE-ELTCLKQWFPISSVP 980 (1092)
Q Consensus 909 ----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~la~~-~d~~i~lwd~~-~~~~~~~~~~~h~~~ 980 (1092)
.|++||+.+++.............. ..+..++|+| ||++++++ .++.++||++. ++..+.. +..|...
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~---~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~-l~~~~~~ 356 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKHYV---EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ-VTKGEWE 356 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSSCC---CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE-CCCSSSC
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCCeE---CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe-cCCCCeE
Confidence 8999999987322211111111111 1246789999 99988875 56788888876 5555555 4566777
Q ss_pred EEE-EEEecCCCEEEEEECC-C----cEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCC--
Q 001363 981 ISQ-ATFSCDCRMVFTSFVD-G----TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-- 1052 (1092)
Q Consensus 981 v~~-l~fs~dg~~l~t~~~D-g----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-- 1052 (1092)
+.. ++|+|||+.|++++.+ + .|..||+.++... .+. +...+ .+++|+| |+.++++++.+
T Consensus 357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~---------~~~~~--~~~~~sp-dg~~l~~~~~~~~ 423 (706)
T 2z3z_A 357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT---------PESGM--HRTQLSP-DGSAIIDIFQSPT 423 (706)
T ss_dssp EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC---------CSSSE--EEEEECT-TSSEEEEEEECSS
T ss_pred EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc---------CCCce--EEEEECC-CCCEEEEEecCCC
Confidence 876 7999999988766654 3 5777777776532 222 12223 3688999 57877776554
Q ss_pred --CcEEEEecCCCC
Q 001363 1053 --GEVYVIEPNEPG 1064 (1092)
Q Consensus 1053 --g~v~~w~~~~~~ 1064 (1092)
+.|++||+....
T Consensus 424 ~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 424 VPRKVTVTNIGKGS 437 (706)
T ss_dssp CSCEEEEEESSSCE
T ss_pred CCcEEEEEECCCCe
Confidence 469999986543
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=8e-21 Score=212.44 Aligned_cols=274 Identities=11% Similarity=0.085 Sum_probs=213.0
Q ss_pred CCceEEeecCCCceEEEEEcC------CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCC
Q 001363 335 SSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg 408 (1092)
..+..++|+|+|++++++... ++.|.+||..+++.+.... ....+..++|+|||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~dg 100 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNTT 100 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCCC
Confidence 478899999999865555433 6789999999998776421 22347789999999
Q ss_pred CEEEEE-eCCCEEEEEEccCCCcccceEEEccccc---------ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001363 409 SLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1092)
Q Consensus 409 ~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 478 (1092)
++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+|+.+++...+.++.|.+||..+++.+
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence 976655 457899999999987654 3333322 278899999999522222246889999999999999
Q ss_pred EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC----CCCceEEEEEccCCCEEEEEecCCCCc
Q 001363 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
..+..+...+..++|+ ++++++++++.++.|.+||..+.+....+.. +...+..++|+|+|++++++.. .+
T Consensus 178 ~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~ 252 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KA 252 (353)
T ss_dssp EEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SS
T ss_pred EEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CC
Confidence 8887666667888885 4678899999999999999998877665554 3446788999999998887763 25
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1092)
+.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|+|+
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d 324 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD 324 (353)
T ss_dssp SEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred CEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence 679999999999888877533 25689999999777665 68999999999999988887653 3689999999
Q ss_pred CCEEEEEeCCC
Q 001363 634 GTLLAVIANEN 644 (1092)
Q Consensus 634 ~~~l~~~~~dg 644 (1092)
|++++++..++
T Consensus 325 g~~l~v~~~~~ 335 (353)
T 3vgz_A 325 GKTLYVSVKQK 335 (353)
T ss_dssp SCEEEEEEECC
T ss_pred CCEEEEEEccc
Confidence 99888776653
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=2.4e-20 Score=207.61 Aligned_cols=277 Identities=14% Similarity=0.152 Sum_probs=193.6
Q ss_pred CceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC-CEEEEE
Q 001363 346 QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY 423 (1092)
Q Consensus 346 g~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d-~~i~iw 423 (1092)
+++++++++.|+.|.+||+.. ++..... ...|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 345677778899999999963 4322111 22367789999999999999998876 899999
Q ss_pred Ecc--CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC---CCceeEEEecCCcCeEEEeecccCC
Q 001363 424 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKEN 498 (1092)
Q Consensus 424 d~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~ 498 (1092)
++. +++. .....+..+. .+.+++|+|+++. +++++..++.|.+||+. +++.+..+..+ ..+.+++|++ +
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~--d 139 (343)
T 1ri6_A 66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP--D 139 (343)
T ss_dssp EECTTTCCE-EEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT--T
T ss_pred EecCCCCce-eeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC--C
Confidence 998 5442 2222344333 7899999999994 33444558899999994 34455555443 4577788854 6
Q ss_pred ccEEEEEe-cCCeEEEEEcCC-CCceE----EecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeE--
Q 001363 499 IHFIFSIS-VDGKIKAWLYDS-LGARV----DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI-- 567 (1092)
Q Consensus 499 ~~~l~s~~-~dg~i~vwd~~~-~~~~~----~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~-- 567 (1092)
++++++++ .++.|.+||+.. +.... .... ....+..++|+|+|+++++++. .++.|.+|+.. +++.
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 67777777 899999999987 43321 2222 3447888999999998877652 25679999995 3433
Q ss_pred EEEEeecc---ccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECC--CC--ceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001363 568 KRTYQGLQ---LQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN--KV--QLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 568 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
...+.... .....+..++|+|++++++++ ..++.|.+||+. ++ +.+..+..+. .+..++|+|+|++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22222111 012356789999999988755 478999999998 33 3444454432 2789999999999888
Q ss_pred Ee-CCCeEEEEECC
Q 001363 640 IA-NENRIKILETP 652 (1092)
Q Consensus 640 ~~-~dg~i~iw~~~ 652 (1092)
++ .++.+.+|++.
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 88 57999999554
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=2.6e-20 Score=207.26 Aligned_cols=205 Identities=10% Similarity=0.161 Sum_probs=144.2
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEc---CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcCC-c
Q 001363 804 AVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-S 876 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-~ 876 (1092)
.+..++|+|+|+++++++ ++.|.+||+ .+.+.+..+..+ ..+.+++|+| ++++|++++ .++.|++||+.+ +
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCC
Confidence 456788888888776665 577999998 444555555533 4688999999 888777777 899999999987 6
Q ss_pred eeeE----eecc-ccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEccCC
Q 001363 877 EVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 877 ~~~~----~l~~-h~~~V~~l~~spdg~~l~s~s-~Dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
+... .+.. ....+..++|+|++++|+.++ .++.|.+|++.. ++......+............+..++|+|||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 5432 2232 345788999999999776554 789999999954 4433222333222211111246789999999
Q ss_pred CEEEE-E-eCCcEEEEEcC--Cc--eeeeeeccCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEEc--CCCce
Q 001363 949 TRFLL-V-HETHLAIYEAE--EL--TCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SNLEV 1012 (1092)
Q Consensus 949 ~~la~-~-~d~~i~lwd~~--~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~Dg~i~vwd~--~~~~~ 1012 (1092)
++|++ . .++.|.+||+. ++ +.+.. ...+. .+..++|+|||++|++++ .++.|.+|++ .+|++
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGF-QPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEE-EECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeee-ecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 98886 3 57899999998 33 33333 22233 388999999999998888 5799999955 46644
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=4e-20 Score=205.16 Aligned_cols=278 Identities=13% Similarity=0.096 Sum_probs=204.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE-EeCCCeEEEEECCCCceeeecccccCceee
Q 001363 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRK 669 (1092)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 669 (1092)
+++++++.++.|++||..+++.+..+........+..++|+|+|+++++ +..++.|.+||..+++....+.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc----
Confidence 4688899999999999999999888875432113678999999987654 45578999999887644332210000
Q ss_pred eeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEE
Q 001363 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 749 (1092)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 749 (1092)
+
T Consensus 78 ----------------------------------------------------------------------------~--- 78 (337)
T 1pby_B 78 ----------------------------------------------------------------------------E--- 78 (337)
T ss_dssp ----------------------------------------------------------------------------T---
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE---------
Q 001363 750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--------- 820 (1092)
Q Consensus 750 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~--------- 820 (1092)
.+...+.+++|+|||++++++
T Consensus 79 --------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 79 --------------------------------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELT 108 (337)
T ss_dssp --------------------------------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred --------------------------------------------------cccccccceEECCCCCEEEEEecccccccc
Confidence 000012234555555555554
Q ss_pred ----eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc--CCeEEEEE
Q 001363 821 ----SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS--KRVTGLVF 894 (1092)
Q Consensus 821 ----sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~ 894 (1092)
.++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+. .+ +.|
T Consensus 109 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~ 181 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE---TYA 181 (337)
T ss_dssp CEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT---TBC
T ss_pred cccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC---cee
Confidence 358899999999988877764 45678899999 88888877 6899999999999887776544 33 378
Q ss_pred cCCCCEEEEEeCCC------------------------cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCE
Q 001363 895 SDALNILVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1092)
Q Consensus 895 spdg~~l~s~s~Dg------------------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 950 (1092)
+||++.++..+.++ .|.+||+.+++... ..... +. ..+.+++|+|||++
T Consensus 182 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~---~~---~~~~~~~~s~dg~~ 254 (337)
T 1pby_B 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM-REVRI---MD---VFYFSTAVNPAKTR 254 (337)
T ss_dssp CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE-EEEEE---CS---SCEEEEEECTTSSE
T ss_pred CCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE-eecCC---CC---CceeeEEECCCCCE
Confidence 99998776554332 46899999877541 11211 11 24778999999999
Q ss_pred EEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 951 FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 951 la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
++++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|.+||+.+++.+..+..
T Consensus 255 l~~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 255 AFGA-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEe-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 9888 79999999999988776443 34678999999999999999999999999999999887763
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=3.6e-20 Score=205.57 Aligned_cols=279 Identities=10% Similarity=0.048 Sum_probs=207.8
Q ss_pred EEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC-cEEEEEECCCCCEEEE-EeCCCEEEEEEcc
Q 001363 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGV-AYSKHIVQLYAYH 426 (1092)
Q Consensus 349 llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~-~V~~l~~spdg~~las-~~~d~~i~iwd~~ 426 (1092)
++++++.+++|.+||+.+++.+.... .++.. .+..++|+|||+++++ ++.++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 68889999999999999988765411 12222 4788999999987755 4567899999999
Q ss_pred CCCcccceEEEcc---cccceeEEEEecCCCcEEEEEEe------------CCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 427 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 427 ~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~~------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
+++.+... .... |...+.+++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+..+
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 98755422 1111 233678999999999 455554 579999999999998887764 4457778
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc-----------------
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE----------------- 554 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~----------------- 554 (1092)
+|++ ++++|+++ ++.|.+||+.+.+....+..... ...+.|+|||+.++..+.... .
T Consensus 141 ~~s~--dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 141 AWAR--DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSG-VMATPFYTARKDIDPADP 214 (337)
T ss_dssp EECT--TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTT-EEEEEEEEEBTTSCTTSG
T ss_pred EECC--CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCC-ceeeeeeccccccccccc
Confidence 8854 66777777 68999999998876665554331 112378999987765543211 1
Q ss_pred ----eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 555 ----SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 555 ----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
..|.+||..+++.. .+.... +...+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++|
T Consensus 215 ~~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 287 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNV 287 (337)
T ss_dssp GGEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEE
T ss_pred cccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEE
Confidence 14799999998875 322211 22568889999999999888 7999999999999888887543 4689999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCceeeeccc
Q 001363 631 NKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1092)
Q Consensus 631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 662 (1092)
+|+|+++++++.++.|.+||+.+++.+..+..
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 99999999999999999999999887766553
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=1.1e-19 Score=201.20 Aligned_cols=284 Identities=11% Similarity=0.038 Sum_probs=195.7
Q ss_pred EEecCCcE-EEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEE
Q 001363 741 TYNNGGQA-IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 819 (1092)
Q Consensus 741 ~~s~~g~~-l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~ 819 (1092)
.|.+++.. +++...++.|.+|+... ++....... +...+ .++|+|||+++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~----~~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT----------------------LEILNQITL----GYDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT----------------------CCEEEEEEC----CCCEE-EEEECSSSCEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc----------------------cceeeeEEc----cCCcc-eEEEcCCCCEEEE
Confidence 35555555 55666678888887543 332333222 34445 9999999997777
Q ss_pred Ee--CCeEEEEEcCCcee-eEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---cEEEEEcCCceeeEeeccccCCeEEEE
Q 001363 820 AS--GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSEVISKLEGHSKRVTGLV 893 (1092)
Q Consensus 820 ~s--dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~ 893 (1092)
++ ++.|.+||..+++. ...+..+.....+++|+| ++++|+++..++ .|.+||+.+++.+..+..+ ....+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence 65 57999999999987 677766666665699999 899888655553 8999999999988887754 4578999
Q ss_pred EcCCCCEEEEE-eCCCc-EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--eCCcEEEEEcCCcee
Q 001363 894 FSDALNILVSS-GGDAQ-IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC 969 (1092)
Q Consensus 894 ~spdg~~l~s~-s~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~~ 969 (1092)
|+|||++|+++ ..++. |.+|++................. ..+..++|+|||++++++ .++.|.+||+.+++.
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 99999865544 55688 99999986432211111111111 247899999999977663 468899999998887
Q ss_pred ---eeeeccCCCCCEEEEEEecCCCEEEEEE-CCCcEEEEEcCCCce--EEeeccccccCCCCcccccc-ceEEEECCCC
Q 001363 970 ---LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEV--QCRILSTAYLRPTTSCLHVY-PHAIAAHPLK 1042 (1092)
Q Consensus 970 ---~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~-~~~~~~~p~d 1042 (1092)
+..+. +...+..++|+|||++|++++ .++.|.+||+.+++. +..+....... ..... ...++|+| |
T Consensus 211 ~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~sp-d 283 (331)
T 3u4y_A 211 ITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID----PRPLFGANQMALNK-T 283 (331)
T ss_dssp CEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCC----CGGGTTCCCEEECT-T
T ss_pred cceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccC----CCCcccccceEECC-C
Confidence 65533 346778899999999877665 578899999999987 33332110011 11111 13478999 4
Q ss_pred CCEEEEEe-CCCcEEEEecCCCC
Q 001363 1043 PTQFAVGL-TNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1043 ~~~l~~~~-~dg~v~~w~~~~~~ 1064 (1092)
+.+|++++ .++.|.+||+....
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEecCCCCcEEEEEecCCc
Confidence 67665554 56799999996544
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=2.8e-19 Score=199.83 Aligned_cols=249 Identities=13% Similarity=0.125 Sum_probs=196.0
Q ss_pred CCcEEEEEECCCCCEEEEEeC-------CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001363 396 GVSVNRVVWSPDGSLLGVAYS-------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~-------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
...+..++|+|||++|++++. ++.|.+||..+++.+.. +. ....+..++|+|+|+. +++++..++.|.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~ 114 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVT 114 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEE
Confidence 356889999999999988874 56899999999876553 32 2345788999999985 456667789999
Q ss_pred EEECCCCceeEEEecCCcC---------eEEEeecccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCceEEEEE
Q 001363 469 VWDAVTGSRTYSFEGHGAP---------VYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~---------v~~i~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 537 (1092)
+||..+++.+..+..+... +..+++++ ++.++++++ .++.|.+||..+.+....+......+..++|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 9999999998888765432 57788855 556666655 4789999999988887777756666788999
Q ss_pred ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-cCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEE
Q 001363 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTT 615 (1092)
Q Consensus 538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~ 615 (1092)
+|+|++++++.. ++.|.+||..+++.+..+..... +...+..++|+|+++++++++. ++.|.+||..+++.+..
T Consensus 193 s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 193 DSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp ETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 999999998864 56799999999998887765221 2356788999999998877664 59999999999999888
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCceeee
Q 001363 616 IDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDA 659 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~ 659 (1092)
+.... ...++|+|+|++++++. .++.|.+||..+++.+..
T Consensus 269 ~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 269 VAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT 309 (353)
T ss_dssp EECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence 87543 25799999999766666 689999999987755443
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1.2e-20 Score=204.99 Aligned_cols=257 Identities=14% Similarity=0.121 Sum_probs=187.6
Q ss_pred EEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccC-CCc
Q 001363 352 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSD 430 (1092)
Q Consensus 352 sg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~-~~~ 430 (1092)
.++.|++|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44678999999999887553 345788999999999999999986 77899999998 764
Q ss_pred ccceEEEccc-ccceeEEEEecCCCcEEEEEEe--CCCcEEEE--ECCCCceeEEEecCCcCeEEEeecccCCccEEE-E
Q 001363 431 ARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-S 504 (1092)
Q Consensus 431 ~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~-s 504 (1092)
.. ...+| ...+.+++|+||++ .+++++ .++...|| +..+++ ...+..+. .+..++|++ +++.|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEEE
Confidence 43 23344 46789999999999 677777 33455555 545554 44454343 478888855 666666 7
Q ss_pred EecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceE
Q 001363 505 ISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVS 582 (1092)
Q Consensus 505 ~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~ 582 (1092)
++.++.+++|+++.. .....+..+...+.+++|+|+|++++.++.. ++.+.+|+.. .+.....+..+. ..+.
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~ 220 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDW 220 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccC
Confidence 889999999997543 3445566667789999999999998877631 2346666654 344455565555 6788
Q ss_pred EEEEcCCCCEEEEEeCC-----------CcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 583 VVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 583 ~~~~~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
.++|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|++++|++++.+.
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999999888765 569999999887654443222234588899999999999887753
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=232.22 Aligned_cols=377 Identities=12% Similarity=0.039 Sum_probs=244.4
Q ss_pred EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC---------CCcEEE
Q 001363 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI 604 (1092)
Q Consensus 534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~i 604 (1092)
.++|+|||++++++ . ++.|++||..+++....+.++......+.+++|+|||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 67899999655543 2 557999999999988777765411124889999999999998876 789999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc-cccCceeeeeecCCCccccccc
Q 001363 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVTGAGI 683 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 683 (1092)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.+++...... ++...
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~----------------- 153 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENK----------------- 153 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTT-----------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCC-----------------
Confidence 999998763111111 3478899999999999986 6899999998775443221 00000
Q ss_pred cCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-CeeEEEe
Q 001363 684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWR 762 (1092)
Q Consensus 684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~~w~ 762 (1092)
+..|..+ .++.- .-.....+++|||||+.|+.++.| +.+.+|.
T Consensus 154 -----------------v~~g~~~---~v~~e----------------e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~ 197 (719)
T 1z68_A 154 -----------------IFNGIPD---WVYEE----------------EMLATKYALWWSPNGKFLAYAEFNDTDIPVIA 197 (719)
T ss_dssp -----------------EEESSCC---HHHHH----------------HTTCSSCCEEECTTSSEEEEEEEECTTSCEEE
T ss_pred -----------------eEccccc---ceeee----------------ecccCcccEEECCCCCEEEEEEECCCCCceEE
Confidence 0000000 00000 001123478999999999988765 5556665
Q ss_pred ecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceee------
Q 001363 763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI------ 836 (1092)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~------ 836 (1092)
+..... .+...+..+.+...|.. .....|++||+.+++..
T Consensus 198 ~~~~~~-------------------------------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 198 YSYYGD-------------------------------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp EEECCS-------------------------------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECC
T ss_pred eeccCC-------------------------------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEcc
Confidence 432100 02223445555444431 01247999999988753
Q ss_pred --EEecCCCCCeEEEEEcCCCCCEEEEEeCCC----cEEEEE----cCCceeeEee----ccccCCeE-----EEEEcCC
Q 001363 837 --LTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDA 897 (1092)
Q Consensus 837 --~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd----~~~~~~~~~l----~~h~~~V~-----~l~~spd 897 (1092)
..+.+|...+..++||| |++++++....+ .|.+|| +.++++...+ .+|.+.+. .++||||
T Consensus 244 ~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp CCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 12335777899999999 788777754332 488999 8888877666 46777777 8999999
Q ss_pred CCEEEE--EeCCC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeC-----CcEEEEEcCC-
Q 001363 898 LNILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE- 966 (1092)
Q Consensus 898 g~~l~s--~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d-----~~i~lwd~~~- 966 (1092)
|+.|+. ...+| .|.+||+.+++.. .+. .+. ..+..+.++ +++.|+. +.+ +..++|.+..
T Consensus 323 g~~l~~~~~~~~g~~~l~~~~~~~~~~~---~lt--~~~----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~ 392 (719)
T 1z68_A 323 AISYYKIFSDKDGYKHIHYIKDTVENAI---QIT--SGK----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG 392 (719)
T ss_dssp SSCEEEEEECTTSCEEEEEESSCSTTCE---ECS--CSS----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred CCeEEEEEEccCCceEEEEEECCCCceE---ecc--cCc----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence 996654 44555 4667777665421 121 111 146777888 8888777 443 6788888753
Q ss_pred -cee-eeee---ccCCCCCEEEEEEecCCCEEEEE-ECC--CcEEEEEcCCCceEEeec
Q 001363 967 -LTC-LKQW---FPISSVPISQATFSCDCRMVFTS-FVD--GTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 967 -~~~-~~~~---~~~h~~~v~~l~fs~dg~~l~t~-~~D--g~i~vwd~~~~~~~~~~~ 1017 (1092)
+.. ...+ +.+|...+..+.|||||++++.. +.+ ..+.+||+.+++....+.
T Consensus 393 ~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 393 SYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 421 1221 22366778899999999877753 333 468999999887654443
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=7.4e-20 Score=219.47 Aligned_cols=272 Identities=12% Similarity=0.074 Sum_probs=198.0
Q ss_pred CCCceEEeecCCCceEEEEEcC-CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-CcEEEEEECCCCCEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLL 411 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~-dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~l 411 (1092)
..+|++++|+|||++ ||+++. ||++.||++.+++... +..|. ..|..++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 447999999999995 566555 9999999997665443 44455 68999999999 777
Q ss_pred EEEeC---CCEEEEEEccC--CCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001363 412 GVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 412 as~~~---d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
++++. +....+|.+.. ..... .+..+. .+...+|+|||+.+++++++.++ +.+||+++++.......+.
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence 77765 45566666543 22111 232222 34467999999875666666555 4599999987765554333
Q ss_pred CeEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 487 PVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
.+++|+ +||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||.
T Consensus 153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 666774 478899988877 78999999887655 55667778899999999999995443 33458999999
Q ss_pred CCCeEEEEEeeccccCCceEEEE--------EcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1092)
.+++.. .+.++. ..+..+. |+|||..+++++.++++++|++ ++.... . ...+.+++|+ ++
T Consensus 226 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg 293 (582)
T 3o4h_A 226 RDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RG 293 (582)
T ss_dssp TTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TT
T ss_pred CCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CC
Confidence 999887 666554 4555556 9999988888999999999999 665441 1 1347789999 99
Q ss_pred CEEEEEeCCCe---EEEEECC
Q 001363 635 TLLAVIANENR---IKILETP 652 (1092)
Q Consensus 635 ~~l~~~~~dg~---i~iw~~~ 652 (1092)
+++++++.+.. +.+|+..
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTC
T ss_pred EEEEEEcCCCCCCeEEEEcCC
Confidence 99988887644 5666554
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=1.6e-18 Score=192.98 Aligned_cols=249 Identities=12% Similarity=0.151 Sum_probs=170.2
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCce--eeEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcC
Q 001363 801 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR 874 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~ 874 (1092)
+...+..++|+|||+++++.. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345667899999999444443 3789999998765 4444455677889999999 888888887 78999999996
Q ss_pred C-c--eeeEeecc---------ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCceeeeeeeecCCCCcCCCCCceE
Q 001363 875 S-S--EVISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 941 (1092)
Q Consensus 875 ~-~--~~~~~l~~---------h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 941 (1092)
. + +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 3 3 23333321 12348899999999977777778899999998 444332222222222 24678
Q ss_pred EEEccCCCEEEEE--eCCcEEEEEcCC--ceeeee-eccCC------CCCEEEEEEecCCCEEE-EEECCCcEEEEEcCC
Q 001363 942 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCLKQ-WFPIS------SVPISQATFSCDCRMVF-TSFVDGTLSIHEASN 1009 (1092)
Q Consensus 942 l~~s~dg~~la~~--~d~~i~lwd~~~--~~~~~~-~~~~h------~~~v~~l~fs~dg~~l~-t~~~Dg~i~vwd~~~ 1009 (1092)
++|+|||++++++ .++.+.+|++.. ++.... ..... ...+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999977774 467899999874 443211 11111 14588999999999874 555689999999973
Q ss_pred C---ceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCC-CcEEEEecCCCCCc
Q 001363 1010 L---EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDT 1066 (1092)
Q Consensus 1010 ~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-g~v~~w~~~~~~~~ 1066 (1092)
. ..+..+. .. . -.+..++|+| |+++|++++.+ +.|.+|++....++
T Consensus 272 ~g~~~~~~~~~------~~--~--~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 272 DGHLTLIQQIS------TE--G--DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GGCEEEEEEEE------CS--S--SCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCcEEEeEEEe------cC--C--CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 3 2222222 10 1 2345789999 57877777764 89999977544443
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=1.5e-19 Score=196.30 Aligned_cols=245 Identities=11% Similarity=0.069 Sum_probs=181.5
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCC-CCeeEEeeeeeeecccccceeeEeeecCC-CCcEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNR 401 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h-~~~V~~ 401 (1092)
......+..|...|.+++|+|||+ +|++++ ++.|.+||+.+ ++.... ..+| ...|.+
T Consensus 31 ~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~~~~~~~~ 89 (297)
T 2ojh_A 31 TRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGFATICNND 89 (297)
T ss_dssp TTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCTTCCCBCSC
T ss_pred CCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------ccccccccccc
Confidence 344456677888999999999999 466665 78999999998 776542 3334 478899
Q ss_pred EEECCCCCEEEEEe--CCCEEEEEEc--cCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC-CCc
Q 001363 402 VVWSPDGSLLGVAY--SKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGS 476 (1092)
Q Consensus 402 l~~spdg~~las~~--~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~ 476 (1092)
++|+|||++|++++ .++.+.||.+ .++. .. .+..+. .+.+++|+||++. ++++++.|+.++||++. .+.
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKNL-PSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSSS-SEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecCC-CccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence 99999999999998 3344555554 4543 22 333333 4889999999994 34478889999999853 233
Q ss_pred eeEEEecCCcCeEEEeecccCCccEEEEEe-cCCeEEEEEcC-CCCceEEecCCCCceEEEEEccCCCEEEEEecCCC--
Q 001363 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-- 552 (1092)
Q Consensus 477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~-- 552 (1092)
....+..+...+.+++|++ ++.+|+.++ .++.+++|+++ .......+..+...+..++|+|+|++|++++.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp CEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred cceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 4456677888899999965 667777665 59999999987 45556666667778899999999999998876432
Q ss_pred -----CceeEEEEeCCCCeEEEE--EeeccccCCceEEEEEcCCCCEEEEEeCCC
Q 001363 553 -----GESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1092)
Q Consensus 553 -----~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 600 (1092)
....|++||+.+++.... +.++. ..+..++|+|++++|++++.+.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence 246799999998866443 33555 6788899999999998877543
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=6.2e-20 Score=226.50 Aligned_cols=279 Identities=14% Similarity=0.078 Sum_probs=197.2
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC---cEEEEEECCCCCEEEEE
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~~las~ 414 (1092)
..++|+|||+ +++++ .|++|++||+.+++.... +.+|.. .|.+++|||||++||++
T Consensus 19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence 3789999996 66665 589999999999986643 223332 48899999999999998
Q ss_pred eC---------CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecC
Q 001363 415 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH 484 (1092)
Q Consensus 415 ~~---------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~ 484 (1092)
+. ++.|++||+.+++.+... .+ ...+.+++|||||+ .|+.+. ++.|++||+.+++..+.. .++
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence 76 689999999998652100 12 24688999999999 566665 789999999988765432 233
Q ss_pred CcCe-----------------EEEeecccCCccEEEEEecCC----------------------------------eEEE
Q 001363 485 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA 513 (1092)
Q Consensus 485 ~~~v-----------------~~i~~~~~~~~~~l~s~~~dg----------------------------------~i~v 513 (1092)
...| .+++| ++||++|++++.|. .|++
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 2222 36777 55788999988652 7889
Q ss_pred EEcCCCCce--EE------ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe----CCCCeEEEEE----eecccc
Q 001363 514 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ 577 (1092)
Q Consensus 514 wd~~~~~~~--~~------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~ 577 (1092)
||+.++... .. +..+...+..++|+||++.+++..........|++|| ..+++....+ .++.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~-- 306 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT-- 306 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence 999876642 11 2346667899999999887776544334456799999 8888776555 2443
Q ss_pred CCceE-----EEEEcCCCCEEEE--EeCCC--cEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----
Q 001363 578 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----- 643 (1092)
Q Consensus 578 ~~~v~-----~~~~~~~~~~l~~--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----- 643 (1092)
..+. .+.|+|+|+.++. ...+| .|.+||+.+++. ..+..+ ...+..+.++ +++.++..+.+
T Consensus 307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~ 381 (719)
T 1z68_A 307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYP 381 (719)
T ss_dssp -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence 4454 7889999997654 33555 577778877763 334322 2345667777 88887777765
Q ss_pred CeEEEEECCC
Q 001363 644 NRIKILETPE 653 (1092)
Q Consensus 644 g~i~iw~~~~ 653 (1092)
+..++|.+..
T Consensus 382 ~~~~l~~~~~ 391 (719)
T 1z68_A 382 GRRNIYRISI 391 (719)
T ss_dssp TCBEEEEEEC
T ss_pred ceEEEEEEeC
Confidence 7888887654
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=9.4e-19 Score=194.95 Aligned_cols=277 Identities=12% Similarity=0.098 Sum_probs=182.9
Q ss_pred ccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeec---CCeeEEEeecCCCcCcCcccccccCCccc
Q 001363 707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS---NGVHLMWRWPRNDLTLSTEATTKVPPRLY 783 (1092)
Q Consensus 707 d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 783 (1092)
++.+.+|.++..... ...+. ...+...+..++|+|+|+ +++++. ++.+.+|++.....
T Consensus 15 ~~~i~v~~~d~~tg~-~~~~~--~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~--------------- 75 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKT-LTNDG--LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA--------------- 75 (347)
T ss_dssp CCEEEEEEEETTTTE-EEEEE--EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE---------------
T ss_pred CCCEEEEEEcCCCCe-EEEee--eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE---------------
Confidence 456778877642211 11111 112345667899999999 666654 58999998754321
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcC-C--ceeeEEecCC---------CCCeEEE
Q 001363 784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM-T--FKTILTIMPP---------SPTATSL 849 (1092)
Q Consensus 784 ~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~-~--~~~~~~~~~~---------~~~i~~l 849 (1092)
.....+. .+...+..++|+|||++|++++ ++.+.+|++. + .+.+..+... ...+.++
T Consensus 76 -------~~~~~~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~ 146 (347)
T 3hfq_A 76 -------HKLNTVV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYT 146 (347)
T ss_dssp -------EEEEEEE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEE
T ss_pred -------EEeeeee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEE
Confidence 0000000 1455678999999999988887 5889999996 2 3333333221 2348899
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEEcC-Cceee--Eeeccc-cCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCC--Cceee
Q 001363 850 AFNPHDNNVIAIGMDDSTILIYNAR-SSEVI--SKLEGH-SKRVTGLVFSDALNILVS-SGGDAQIFVWDVDG--WGIQT 922 (1092)
Q Consensus 850 ~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~--~~l~~h-~~~V~~l~~spdg~~l~s-~s~Dg~I~iwd~~~--~~~~~ 922 (1092)
+|+| +++++++...++.|++|++. +++.. ..+..+ ...+..++|+|||++|++ ...++.|.+|++.. ++...
T Consensus 147 ~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 147 DLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 9999 77777777778999999998 55432 222222 236788999999996665 56788999999885 44333
Q ss_pred eeeeecCCCCcCCCCCceEEEEccCCCEEEE-E-eCCcEEEEEcCC-c--eeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001363 923 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEE-L--TCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 923 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~i~lwd~~~-~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
...+............+..++|+|||++|++ . .++.|.+|++.. + +.+.. ...+...+..++|+|||++|++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ-ISTEGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE-EECSSSCCCEEEECTTSSEEEEEE
T ss_pred eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE-EecCCCCcCeEEECCCCCEEEEEE
Confidence 2233332221111124788999999998865 3 478999999973 2 33333 334566788999999999998887
Q ss_pred CC-CcEEEE--EcCCCceE
Q 001363 998 VD-GTLSIH--EASNLEVQ 1013 (1092)
Q Consensus 998 ~D-g~i~vw--d~~~~~~~ 1013 (1092)
.+ +.|.+| |..+|++.
T Consensus 305 ~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 305 QNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TTTTEEEEEEECTTTCCEE
T ss_pred cCCCcEEEEEEeCCCCeEE
Confidence 65 899999 55567665
No 154
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=6.3e-19 Score=199.86 Aligned_cols=308 Identities=10% Similarity=0.016 Sum_probs=202.7
Q ss_pred cccCCCcceeeecccCCCCceE-----EeecCCCceEEEEEcCCC--cEEEEecCCCCeeEEeeeeeeecccccceeeEe
Q 001363 318 SFSDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390 (1092)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~-----v~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 390 (1092)
+++.........|..|...+.. .+|||||++++.++..++ .|.+||+.+++....
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------------ 75 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------------ 75 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------------
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------------
Confidence 3444445667778888766666 899999996555544466 488889988876542
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEE--EEecCCCcEEEEE--------
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL--AFSAPCKQISVIT-------- 460 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~--~~s~d~~~l~l~s-------- 460 (1092)
..+|...+..++|||||++|++++.++.|++||+.+++... ....+...+... .+++|++ .++.
T Consensus 76 -t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~ 149 (388)
T 3pe7_A 76 -TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDW 149 (388)
T ss_dssp -CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGC
T ss_pred -eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccc
Confidence 34455555578899999999999999999999999986443 233444444433 3489998 4543
Q ss_pred --------------EeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCC
Q 001363 461 --------------CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLG 520 (1092)
Q Consensus 461 --------------~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~ 520 (1092)
.+.+..|.+||+.+++.. .+..+...+..+.|+|. |+..|+....+ ..|.++|.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 224578999999998754 44456677888888541 56777777653 367777776654
Q ss_pred ceEEecCCC-CceEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCCeEEEE--EeeccccCCceEEEEEcCCCCEEEEE
Q 001363 521 ARVDYDAPG-LGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA 596 (1092)
Q Consensus 521 ~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~ 596 (1092)
......... ..+..++|+|||+.|+..+... .....|++||+.+++.... +.++...........|+|+|+.++..
T Consensus 228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence 443333222 3577889999999887665432 2234599999999875432 22210000001123689999988754
Q ss_pred ---------eCCCcEEEEECCCCceEEEEeCCCCCC--------CCceEEEccCCCEEEEEeC-CCeEEEEEC
Q 001363 597 ---------GDDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILET 651 (1092)
Q Consensus 597 ---------s~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iw~~ 651 (1092)
..+..|++||+.+++............ .+..++|+|||+.|+..+. +|...+|.+
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 308 VQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ---------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 456789999999887654433322100 3678899999998887765 566666654
No 155
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=8.3e-19 Score=216.04 Aligned_cols=278 Identities=14% Similarity=0.120 Sum_probs=186.7
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCC-----cEEEEEECCCCC
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS 409 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~-----~V~~l~~spdg~ 409 (1092)
.....++|+|||+ +++++ |++|++||+.+++.... +.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence 3567899999997 67776 89999999999986543 444543 234488999999
Q ss_pred EEEEEeCC---------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 410 LLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 410 ~las~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+|++++.+ +.+.+||+.+++... +..|.+.+...+|||||+ .|+.+. |+.|++||+.+++..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence 99999876 567799999986443 567788899999999999 466654 78999999988875542
Q ss_pred -EecCCcCe-----------------EEEeecccCCccEEEEEecCCe-EEEEEcCCCCceEEecCCCCceEEEEEccCC
Q 001363 481 -FEGHGAPV-----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1092)
Q Consensus 481 -~~~~~~~v-----------------~~i~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg 541 (1092)
..++...+ ..+.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+...|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 22332222 23566 568889998876655 8888764221110 123355667777766
Q ss_pred CEEEEEecCCCCceeEEEEeCCC---C---eEEEEEeecc---ccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECC
Q 001363 542 RRLFSCGTSKEGESFLVEWNESE---G---AIKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMN 608 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~---~---~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~ 608 (1092)
.. .....|++||+.+ + +... +.... .+...+..++|+||++.++... .+..|++||+.
T Consensus 223 ~~--------~~~~~l~v~d~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 223 AV--------NPTVKFFVVNTDSLSSVTNATSIQ-ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293 (740)
T ss_dssp SC--------CCEEEEEEEETTSCCSSSCCCEEE-ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred Cc--------CCeeEEEEEECCCCCCCCcceEEE-ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC
Confidence 43 1244699999998 7 3332 32200 1236789999999998666543 23479999999
Q ss_pred CCc----eE--EEE--eCCCCCCC---CceEEEccCCCEEE-EEeC-C--CeEEEEECCCCc
Q 001363 609 KVQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESN 655 (1092)
Q Consensus 609 ~~~----~~--~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iw~~~~~~ 655 (1092)
+++ +. ..+ ..+..... ...++|+|||+.++ ..+. + ..|++|+..++.
T Consensus 294 tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 887 21 111 22221111 23789999999887 6654 3 457777776553
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=3.5e-17 Score=183.30 Aligned_cols=312 Identities=10% Similarity=0.091 Sum_probs=195.8
Q ss_pred cCCCEEEEEecCCCCceeEEEEeC--CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCC--C
Q 001363 539 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V 610 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~--~ 610 (1092)
+...+++.++.....++.|++|.+ .+++.......+ ...+..++|+|++++|++++.+ +.|.+|++.. +
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~---~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE---VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE---CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc---CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence 344456666544334556777754 567654443333 3677889999999999998876 7999998765 4
Q ss_pred ceEEEEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCcee
Q 001363 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 689 (1092)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 689 (1092)
+................+++ +++++++++ .++.+.+|++.....+.....
T Consensus 88 ~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~--------------------------- 138 (361)
T 3scy_A 88 TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD--------------------------- 138 (361)
T ss_dssp EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE---------------------------
T ss_pred cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce---------------------------
Confidence 43222221111223456666 788777776 578899999864322111000
Q ss_pred ecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcC
Q 001363 690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 769 (1092)
Q Consensus 690 ~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~ 769 (1092)
.+.....+.
T Consensus 139 -------------------------------------------------~~~~~g~~~---------------------- 147 (361)
T 3scy_A 139 -------------------------------------------------VIEFKGSGP---------------------- 147 (361)
T ss_dssp -------------------------------------------------EEECCCCCS----------------------
T ss_pred -------------------------------------------------eEEccCCCC----------------------
Confidence 000000000
Q ss_pred cCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCce-------e-----
Q 001363 770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-------T----- 835 (1092)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~-------~----- 835 (1092)
. +...+...+.+++|+|||+++++++ ++.+.+|++.... .
T Consensus 148 ----------------~----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 148 ----------------D----------KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp ----------------C----------TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred ----------------C----------ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence 0 0001233467788888888776665 5788888876433 1
Q ss_pred -eEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcCCcee--eEee---ccccCCeEEEEEcCCCCEEEEEeCC-
Q 001363 836 -ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGGD- 907 (1092)
Q Consensus 836 -~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~--~~~l---~~h~~~V~~l~~spdg~~l~s~s~D- 907 (1092)
......+......++|+| |++++++++ .++.|.+|++.+++. +..+ ..+...+..++|+|||++|+++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 202 PEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred ccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence 112233455678999999 888887777 689999999987754 2222 3344567899999999998766654
Q ss_pred -CcEEEEEcC--CCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--eCCcEEEEEc--CCceeeeeeccCCCCC
Q 001363 908 -AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEA--EELTCLKQWFPISSVP 980 (1092)
Q Consensus 908 -g~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~--~~~~~~~~~~~~h~~~ 980 (1092)
+.|.+|++. +++......+.. + ..+..++|+|||++|+++ .++.|.+|++ .+++........+...
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~ 353 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDK 353 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSS
T ss_pred CCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCC
Confidence 889999996 344322222222 1 247799999999998885 4578999655 4676654432334567
Q ss_pred EEEEEEe
Q 001363 981 ISQATFS 987 (1092)
Q Consensus 981 v~~l~fs 987 (1092)
+.|+.|.
T Consensus 354 p~~v~~~ 360 (361)
T 3scy_A 354 PVCLKFV 360 (361)
T ss_dssp EEEEEEE
T ss_pred CeEEEEc
Confidence 8999886
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1.4e-17 Score=186.47 Aligned_cols=300 Identities=13% Similarity=0.110 Sum_probs=196.5
Q ss_pred ecCCCceEEEEEc----CCCcEEEEec--CCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 342 FHPVQHTLLLVGT----NVGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 342 ~spdg~~llasg~----~dg~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
..+... .+.+|+ .++.|.+|++ .+|+..... .. +...+..++|+|||++|++++
T Consensus 9 ~~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~~ 68 (361)
T 3scy_A 9 TTDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSVN 68 (361)
T ss_dssp GGGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEEE
T ss_pred hCCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEEE
Confidence 344443 455664 3567888876 455543320 11 567788899999999999998
Q ss_pred CC----CEEEEEEccCC-CcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE---ecC---
Q 001363 416 SK----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---EGH--- 484 (1092)
Q Consensus 416 ~d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---~~~--- 484 (1092)
.+ +.|.+|++... ..+........+......+++ +++. ++++...++.|.+|++.+...+..+ ..+
T Consensus 69 ~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 69 EFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp CCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred ccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 75 79999998763 223333344445556777777 7773 3444457889999999754333211 111
Q ss_pred --------CcCeEEEeecccCCccEEEEEe-cCCeEEEEEcCCCCc------e-------EEecCCCCceEEEEEccCCC
Q 001363 485 --------GAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA------R-------VDYDAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 485 --------~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~------~-------~~~~~~~~~i~~~~~s~dg~ 542 (1092)
...+.+++|+ ++++++++++ .++.|.+|+++.... . ............++|+|||+
T Consensus 146 ~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~ 223 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK 223 (361)
T ss_dssp CSCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred CCCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence 2234678885 4677665544 589999999886542 1 22233445678999999999
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCC--CcEEEEECC--CCc--eEE
Q 001363 543 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--HVIKIWDMN--KVQ--LLT 614 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--g~i~iwd~~--~~~--~~~ 614 (1092)
+++++.. .++.|.+|++.+++.. ..+.....+......++|+|++++++++..+ +.|.+|++. +++ .+.
T Consensus 224 ~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~ 300 (361)
T 3scy_A 224 FAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG 300 (361)
T ss_dssp EEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE
T ss_pred EEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee
Confidence 8887763 2567999999877653 3333322222456899999999999776654 899999985 455 344
Q ss_pred EEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECC--CCceeeec-ccccCceeeeee
Q 001363 615 TIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETP--ESNSVDAA-GVLSDNLRKLSV 672 (1092)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~-~~~~~~v~~~~~ 672 (1092)
.+.. ...+..++|+|+|++|++++ .++.|.+|++. +++..... ..+.....|+.|
T Consensus 301 ~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 301 YQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 4443 23478999999999998887 57999996554 55544433 223345555555
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=4.5e-18 Score=189.66 Aligned_cols=283 Identities=11% Similarity=0.060 Sum_probs=194.6
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-eC
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS 416 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~ 416 (1092)
+.++++++++ ++++++.+++|.+||+.+++.+..... +....+..++|+|||++++++ ..
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVM------------------PDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEEC------------------SSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEec------------------CCCCCCceeEECCCCCEEEEEeCC
Confidence 3567888887 788999999999999999887654211 122257889999999976554 56
Q ss_pred CCEEEEEEccCCCcccceEEEc-cc-----ccceeEEEEecCCCcEEEEEEeCC------------CcEEEEECCCCce-
Q 001363 417 KHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSR- 477 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~-~h-----~~~v~~~~~s~d~~~l~l~s~~~d------------~~i~vwd~~~~~~- 477 (1092)
++.|.+||+.+++... .+. .+ ...+.+++|+|||+ .+++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 8899999999886544 232 22 23478999999999 56666654 8999999998543
Q ss_pred --eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC------------------------c
Q 001363 478 --TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------------------------G 531 (1092)
Q Consensus 478 --~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------------------------~ 531 (1092)
+..+. +...+.+++|++ +++ +++++ +.|.+||..+++....+..... .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 34444 334577888855 666 55543 4499999988876665543320 2
Q ss_pred eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEE-EeeccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 001363 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
...+++++++........ ....+..+|..+++.... +... ...+..++|+| ++++++++ ++.|.+||+.+
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~ 284 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL---TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ 284 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC---SSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC---CCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence 344666655532211110 011233366666553221 1122 35788999999 99999888 88999999999
Q ss_pred CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001363 610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
++.+..+.... .+..++|+|+|++|++++.++.|.+||..+++.+..+.
T Consensus 285 ~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 285 RKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp TEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 99888887543 36789999999999988889999999999887776654
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=2.9e-19 Score=203.76 Aligned_cols=271 Identities=13% Similarity=0.091 Sum_probs=188.1
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce----------eeEE-----ecCCCCCeEEEEEcCCCCCEEE----EE
Q 001363 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----------TILT-----IMPPSPTATSLAFNPHDNNVIA----IG 862 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~----------~~~~-----~~~~~~~i~~l~~s~~d~~~la----sg 862 (1092)
...+..+++++++.++++++.+.+++|+..... .+.. ...+...|.+++|+| ++++|| +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence 345788999999999999986559998764211 1111 112456799999999 899999 78
Q ss_pred eCCCcEEEEEcCCc--------e---eeEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001363 863 MDDSTILIYNARSS--------E---VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930 (1092)
Q Consensus 863 ~~dg~v~iwd~~~~--------~---~~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 930 (1092)
+.|+.|+|||+.++ + .+..+.+|...|.+++|+|+ +++|++++.||+|++||+.++... ....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-----~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-----CATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-----EEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-----eecc
Confidence 89999999999765 2 24666789999999999998 899999999999999999986321 1122
Q ss_pred CCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeeeecc------CCCCCEEEEEEecCCCEEEEE-ECCCc-
Q 001363 931 GVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTS-FVDGT- 1001 (1092)
Q Consensus 931 ~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~-~~Dg~- 1001 (1092)
+|.. .|.+++|+|+|++|++ +.|++|++||.. ++....+.. .|...|.+++|++++.++++. +.||.
T Consensus 190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 2332 6999999999999999 578999999998 444433211 234489999999999887653 34433
Q ss_pred -----EEEEEcCCCce-----EEeeccccccCCCCccccccceEEEECCCCCCEEEEEeC-CCcEEEEecCCCCCccccC
Q 001363 1002 -----LSIHEASNLEV-----QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT-NGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus 1002 -----i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~-dg~v~~w~~~~~~~~~~~~ 1070 (1092)
+++|++..... ...+....+.... .....+.+.+-++ .+++++++. .+.|.+......++.|...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~l~d-w~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCT---ERQHHYYLSYIEE-WDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCS---SSCCCEEEEEEGG-GTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCC---CcCcceeeehhcc-CCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 89999986532 1122111111111 1111123444453 455555544 5679999887777678887
Q ss_pred CCCCcccCCCCCCccc
Q 001363 1071 PPDEIVGDQPTSTSEG 1086 (1092)
Q Consensus 1071 ~~~~~~~~~~~~~~~~ 1086 (1092)
...|..+++.+.+.++
T Consensus 342 ~~~d~~ra~lP~~~~~ 357 (434)
T 2oit_A 342 LLEDSSRAELPVTDKS 357 (434)
T ss_dssp EECGGGCCBCCBCTTS
T ss_pred eccccccccccCCCCC
Confidence 7778777777666553
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=7.1e-18 Score=207.74 Aligned_cols=379 Identities=12% Similarity=0.034 Sum_probs=241.4
Q ss_pred eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce--EEEEEcCCCCEEEEEeCC---------C
Q 001363 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGDD---------H 600 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~d---------g 600 (1092)
..++.|+|||++++++ ++.|++||..+++....+.++......+ ..+.|+|||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999988875 4469999999999888888776222223 348899999999998876 5
Q ss_pred cEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc-cccCceeeeeecCCCccc
Q 001363 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVT 679 (1092)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 679 (1092)
.+.+||+.+++... +.. +...+..++|||||+.||.+. ++.|++|+..++...+... ++...
T Consensus 93 ~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------- 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------- 155 (740)
T ss_dssp EEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred EEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence 67799999987643 322 234578999999999999885 5899999998775433211 10000
Q ss_pred cccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC-Cee
Q 001363 680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVH 758 (1092)
Q Consensus 680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i 758 (1092)
+..+.. --+|.-+ -......+.|||||+.|+.+..| +.+
T Consensus 156 ---------------------~~~g~~---~~v~~ee----------------~~~~~~~~~wSpDg~~la~~~~d~~~v 195 (740)
T 4a5s_A 156 ---------------------IYNGIT---DWVYEEE----------------VFSAYSALWWSPNGTFLAYAQFNDTEV 195 (740)
T ss_dssp ---------------------EEESBC---CHHHHHH----------------TSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred ---------------------eecCcc---cccccch----------------hcCCCcceEECCCCCEEEEEEEcccCC
Confidence 000000 0000000 01223457999999999988766 458
Q ss_pred EEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC---ce-
Q 001363 759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK- 834 (1092)
Q Consensus 759 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~---~~- 834 (1092)
.+|++..... .. .+...+..+.+.+.|..- ...+|++||+.+ ++
T Consensus 196 ~~~~~~~~~~-----------------~~------------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 196 PLIEYSFYSD-----------------ES------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp CEEEEEECCS-----------------TT------------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSC
T ss_pred ceEEEEeecC-----------------CC------------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCc
Confidence 8887653210 00 133445666777666421 123689999998 73
Q ss_pred -eeEEec------CCCCCeEEEEEcCCCCCEEEEEeC----CCcEEEEEcCCce----ee--Eee--ccccCCeE-----
Q 001363 835 -TILTIM------PPSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT----- 890 (1092)
Q Consensus 835 -~~~~~~------~~~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~----~~--~~l--~~h~~~V~----- 890 (1092)
....+. ++...+..++|+| |+++++.... +..|++||+.+++ +. ..+ .+|...|.
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~ 322 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS 322 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence 233343 2677899999999 8887666543 3379999999987 32 222 45665554
Q ss_pred EEEEcCCCCEEE-EEeC-C--CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeC-----C--c
Q 001363 891 GLVFSDALNILV-SSGG-D--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T--H 958 (1092)
Q Consensus 891 ~l~~spdg~~l~-s~s~-D--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d-----~--~ 958 (1092)
.++|||||+.|+ ..+. + ..|.+||+.+++.. +...+.. .+..+. ++|++.|+. +.. + .
T Consensus 323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ 392 (740)
T 4a5s_A 323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRN 392 (740)
T ss_dssp CCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBE
T ss_pred CceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeE
Confidence 789999999887 6654 3 46888898875522 2223322 244443 355777766 432 2 3
Q ss_pred EEEEEcCCceeeeeec---cCCCCCEEEEEEecCCCEEEEEECC---CcEEEEEcCCCceEEee
Q 001363 959 LAIYEAEELTCLKQWF---PISSVPISQATFSCDCRMVFTSFVD---GTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 959 i~lwd~~~~~~~~~~~---~~h~~~v~~l~fs~dg~~l~t~~~D---g~i~vwd~~~~~~~~~~ 1016 (1092)
|+..++..+.....+. .+....+..+.|||||++++..... ..+.+++..+++....+
T Consensus 393 ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 393 LYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp EEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 5555555444321222 1234678899999999987755433 36888898888765444
No 161
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=1.5e-18 Score=197.75 Aligned_cols=221 Identities=12% Similarity=0.038 Sum_probs=160.2
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE-
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG- 412 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la- 412 (1092)
...++.+++++++. ++++|+.++ ++||+...-..... . -.+.. ....+.......|...|.+++|+|+|++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~-~--~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNK-P--GDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCC-T--TCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcc-c--ccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34789999999998 677788777 99987642110000 0 00000 000000011224677899999999999999
Q ss_pred ---EEeCCCEEEEEEccCC--------CcccceEEEcccccceeEEEEecC-CCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001363 413 ---VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 413 ---s~~~d~~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 480 (1092)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7788999999999765 222334456789999999999998 56 899999999999999999988777
Q ss_pred EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEccCCCEEEEEecCC--
Q 001363 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK-- 551 (1092)
Q Consensus 481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~~~-- 551 (1092)
..+|...|.+++|++ +|.+|++|+.||.|++||.+ ......+..+ ...+.+++|++++.++++.....
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 788999999999965 57899999999999999998 4444444332 23789999999988887655321
Q ss_pred -CCceeEEEEeCCCC
Q 001363 552 -EGESFLVEWNESEG 565 (1092)
Q Consensus 552 -~~~~~i~iwd~~~~ 565 (1092)
+....+++|++...
T Consensus 265 ~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 265 LETSPDVVMALLPKK 279 (434)
T ss_dssp SSSCCEEEEEECCCT
T ss_pred cCCCCceEEEEeccC
Confidence 11234889998754
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=1.4e-18 Score=208.28 Aligned_cols=236 Identities=16% Similarity=0.170 Sum_probs=175.3
Q ss_pred CCcEEEEEECCCCCEEEEEeC-CCEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEeC---CCcEEEE
Q 001363 396 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW 470 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~---d~~i~vw 470 (1092)
..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|. ..+..++|+|| + ++++++. +....+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 457999999999999999887 999999999776533 344555 68999999999 5 6776664 4555665
Q ss_pred ECCC---CceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001363 471 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 471 d~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 547 (1092)
.+.. +... .+..+ ..+...+|++++++..+++++.++. .+||+.+++.......+. .+++|+|||++++++
T Consensus 94 ~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5432 3322 33322 2344567777766556666555555 499998876554443332 789999999999988
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEEEeCCCCCCCC
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN 625 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1092)
+.+..+...|++||+.+++.. .+..+. ..+..++|+|||+.|+++..++ .|++||+.+++.. .+..+ ...+
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~ 240 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDF 240 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcCh
Confidence 765444477999999988765 555555 7789999999999999888888 8999999998877 44433 2335
Q ss_pred ceEE--------EccCCCEEEEEeCCCeEEEEEC
Q 001363 626 PRIC--------FNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 626 ~~v~--------~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
..++ |+|||.++++++.++.+++|++
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 5666 9999999999999999999998
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=6e-18 Score=191.81 Aligned_cols=257 Identities=11% Similarity=0.027 Sum_probs=178.0
Q ss_pred ecCCCCcEEE-----EEECCCCCEEEEEeC-CC--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC
Q 001363 392 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1092)
Q Consensus 392 l~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~ 463 (1092)
++.|...+.. .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 6667766666 899999999999987 66 48888998876443 2345555566789999999 7888888
Q ss_pred CCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe----------------------cCCeEEEEEcCCCCc
Q 001363 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA 521 (1092)
Q Consensus 464 d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------------------~dg~i~vwd~~~~~~ 521 (1092)
++.|++||+.+++....+..+...+....+..++++.+++... .++.|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999998877777677666555555567777777432 346799999988754
Q ss_pred eEEecCCCCceEEEEEcc-CCCEEEEEecCCC--CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC
Q 001363 522 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 522 ~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
.. +..+...+..++|+| ||+.|+.+..... ....|+++|..++.......... ...+....|+|||+.|+..+.
T Consensus 181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEEEEECTTSSCEEEEEE
T ss_pred EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--CcccccceECCCCCEEEEEec
Confidence 43 334455688999999 9999988775321 14468889987665433332221 124778899999998866442
Q ss_pred -C----CcEEEEECCCCceEEEEeCCCC--C-CCCceEEEccCCCEEEEE---------eCCCeEEEEECCCCce
Q 001363 599 -D----HVIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESNS 656 (1092)
Q Consensus 599 -d----g~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i~iw~~~~~~~ 656 (1092)
+ +.|++||+.+++.......... . ......+|+|||+.|+.. ..+..|++|++.+++.
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 2 2399999999875443322210 0 012334799999988864 4466899999887643
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=2.2e-17 Score=184.05 Aligned_cols=297 Identities=9% Similarity=0.013 Sum_probs=197.8
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
..++.++++++.++.|.+||+.+++....+..+. ..+..++|+|+|++++++.. .++.|++||+.+++.+..+...
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcc
Confidence 4466889999999999999999887766665443 25678999999997776552 3567999999999988776642
Q ss_pred ccc---CCceEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCce---EEEEeCCCCCCCCceEEEccCCCE
Q 001363 575 QLQ---HNSVSVVHFDTAKDQILAAGDD------------HVIKIWDMNKVQL---LTTIDAGGGLPENPRICFNKNGTL 636 (1092)
Q Consensus 575 ~~~---~~~v~~~~~~~~~~~l~~~s~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1092)
... ...+..++|+|+++++++++.+ +.|.+||+.+++. +.....+ ..+.+++|+|+|+
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGS- 160 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSC-
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC---CcccceeECCCCc-
Confidence 200 1236788999999999998865 8999999988543 3344433 2478899999999
Q ss_pred EEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
+++++ +.|.+||..+++....+......... +. .+ ..+.+|...
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~--~~---------------------~~-----------~~~~~~~~~ 204 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKG--YS---------------------AP-----------DVLYFWPHQ 204 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCCTT--BC---------------------CC-----------BCCCCCCCC
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCCcc--cc---------------------Cc-----------cceeeecCC
Confidence 55554 34999999888766544321100000 00 00 112223211
Q ss_pred cccCccccccccCCccccccEEEEEEecCCcEEE-----------EeecCCeeEEEeecCCCcCcCcccccccCCccccC
Q 001363 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-----------ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 785 (1092)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-----------~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1092)
... ........+++++++.... .....+.+.+|++.
T Consensus 205 ~~~------------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 251 (349)
T 1jmx_B 205 SPR------------HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA--------------------- 251 (349)
T ss_dssp CTT------------CEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---------------------
T ss_pred Ccc------------eeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc---------------------
Confidence 000 0001233455655542211 11222333333321
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEEec-CCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 001363 786 RHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 864 (1092)
Q Consensus 786 ~~g~~~~~~~l~~~~~~~~v~~~~~s~-dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~ 864 (1092)
.+...+..++++| |+++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.
T Consensus 252 --------------~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~ 314 (349)
T 1jmx_B 252 --------------DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGT 314 (349)
T ss_dssp --------------ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESB
T ss_pred --------------cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecC
Confidence 1345678999999 99999988 88999999999998887763 34577999999 8888888888
Q ss_pred CCcEEEEEcCCceeeEeeccc
Q 001363 865 DSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 865 dg~v~iwd~~~~~~~~~l~~h 885 (1092)
++.|.+||+.+++.+..+...
T Consensus 315 ~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 315 FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SSEEEEEETTTTEEEEEEECS
T ss_pred CCeEEEEeccccceeeeeecC
Confidence 999999999999988877644
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=3.6e-17 Score=183.06 Aligned_cols=249 Identities=9% Similarity=0.104 Sum_probs=169.2
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcC-CceeeEEecC-CCCCeEEEEEcCCCCCE--EEEEe-------------CC
Q 001363 803 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNNV--IAIGM-------------DD 865 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~~--lasg~-------------~d 865 (1092)
..+..++|+|||++|++++.+.|.+|++. +++....... ..+...+++|+| |+++ ++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 45778999999999988875599999997 7776543321 112356789999 8884 55553 68
Q ss_pred CcEEEEEcC-CceeeEeec----cccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC-CCceeeeeeeecCCCCcCCCCC
Q 001363 866 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS 938 (1092)
Q Consensus 866 g~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 938 (1092)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|++. +++......+.... + ...
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GDH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TCC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CCC
Confidence 999999997 466544443 25567999999999998887764 6789999998 66543222222111 0 124
Q ss_pred ceEEEEccCCCEEEEEe--CCcEEEEEcC--Cceeee---ee--cc----CCCC------CEEEEE-EecCCCEEEEEEC
Q 001363 939 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSFV 998 (1092)
Q Consensus 939 v~~l~~s~dg~~la~~~--d~~i~lwd~~--~~~~~~---~~--~~----~h~~------~v~~l~-fs~dg~~l~t~~~ 998 (1092)
+..++|+|||++|+++. ++.|.+|++. +++... .+ .. +|.. .+..++ |||||++|++++.
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 78999999999998753 5789999875 555421 11 11 1222 588999 9999999887764
Q ss_pred CC------cEEEEEcC-CCceEEeeccccccCCCCccccccceEEEECCC--CCCEEEEEeCC-CcEEEEecCCC
Q 001363 999 DG------TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1063 (1092)
Q Consensus 999 Dg------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~~~~d-g~v~~w~~~~~ 1063 (1092)
+. +|.+|++. +|++........... . .+..++++|. |+++|+++..+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~-----~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT-----S--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSS-----C--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCC-----C--CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 32 89999996 666543211000011 1 1224667884 47888888765 89999998543
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=1.8e-16 Score=176.17 Aligned_cols=296 Identities=10% Similarity=0.109 Sum_probs=201.3
Q ss_pred CCCceEEEEE-----cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe---
Q 001363 344 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY--- 415 (1092)
Q Consensus 344 pdg~~llasg-----~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~--- 415 (1092)
+++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|||||++|++++
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~ 71 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH 71 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence 3566555443 2468999999999987653 3334444 899999999999986
Q ss_pred -------CCCEEEEEEccCCCcccceEEEcc---cccceeEEEEecCCCcEEEEEEe--CCCcEEEEECCCCceeEE-Ee
Q 001363 416 -------SKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE 482 (1092)
Q Consensus 416 -------~d~~i~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~~-~~ 482 (1092)
.++.|.+||..+++.+..+..... +......++|+|||+ +|+++. .+++|.+||+.+++.+.. +.
T Consensus 72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 256799999998876654322111 223567899999999 455544 368999999999988877 54
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-------EecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-------~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
. ... ..+.+.|.. ...+++.+.||.+.+|++....... .+.....+ ..+.+++++..++..+. ++
T Consensus 150 ~-~~~-~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~ 221 (361)
T 2oiz_A 150 A-AGC-WSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG 221 (361)
T ss_dssp G-TTE-EEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred C-CCc-ceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence 2 221 223344432 3678889999999999987533322 11122222 23345677877776654 45
Q ss_pred eEEEEeCCCCeE--EEEEeecc---cc----CCceEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceEEE
Q 001363 556 FLVEWNESEGAI--KRTYQGLQ---LQ----HNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT 615 (1092)
Q Consensus 556 ~i~iwd~~~~~~--~~~~~~~~---~~----~~~v~~~~~~~~~~~l~~~s~-----------dg~i~iwd~~~~~~~~~ 615 (1092)
.++++|...+.. ...+.... .. ......++|+|+++.++++.. .+.|.+||+.+++.+..
T Consensus 222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 699999875542 22221100 00 011123689999988887643 35899999999999999
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC--ceeeecccccCceeeeeecCC
Q 001363 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPI 675 (1092)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~ 675 (1092)
+..+. +..++|+|||++|+++.. +.|.+||..++ +.+..+......-..+++.|+
T Consensus 302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence 98764 789999999999998887 99999999999 888776555555666677654
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=5.5e-17 Score=184.39 Aligned_cols=299 Identities=11% Similarity=-0.002 Sum_probs=194.2
Q ss_pred CcceeeecccCCCC-----ceEEeecCCCceEEEEEcCC--CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCC
Q 001363 323 PKTVAQTLIEGSSS-----PMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395 (1092)
Q Consensus 323 p~~~~~~l~~h~~~-----V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h 395 (1092)
....+..|..+... +..++|||||++++++...+ ..|.+||+.+++... +..+
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~--------------------l~~~ 78 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ--------------------LTEG 78 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE--------------------CCCS
T ss_pred CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE--------------------eecC
Confidence 34445666655433 88999999999655555443 368888998876543 2223
Q ss_pred CCc-EEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeE-------------------EEEecCCCc
Q 001363 396 GVS-VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQ 455 (1092)
Q Consensus 396 ~~~-V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------~~~s~d~~~ 455 (1092)
... ...++|||||++|++++.++.|++||+.+++... ....+...... ++|+|+++.
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~ 155 (396)
T 3c5m_A 79 KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW 155 (396)
T ss_dssp SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc
Confidence 333 3347899999999999999999999999876432 22223322222 356788873
Q ss_pred EEEEEE-----eCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEE
Q 001363 456 ISVITC-----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVD 524 (1092)
Q Consensus 456 l~l~s~-----~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~ 524 (1092)
++.+ ..+..|.+||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+........
T Consensus 156 --~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (396)
T 3c5m_A 156 --EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI 231 (396)
T ss_dssp --HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred --eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEe
Confidence 3332 45678999999998765544 46677888888652 45556665543 3588888876554333
Q ss_pred ecCC-CCceEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEe----
Q 001363 525 YDAP-GLGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG---- 597 (1092)
Q Consensus 525 ~~~~-~~~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s---- 597 (1092)
.... ...+..++|+|||++|+..+... .....|++||+.+++....... . ... +.|+| +++.+++++
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC-
T ss_pred eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcc
Confidence 3321 23578899999999888775432 1224599999998876543322 2 123 88999 999888754
Q ss_pred ------------CCCcEEEEECCCCceEEEEeCCCCC--------CCCceEEEccCCCEEEEEeC-CCeEEEE--ECCCC
Q 001363 598 ------------DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKIL--ETPES 654 (1092)
Q Consensus 598 ------------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~i~iw--~~~~~ 654 (1092)
.++.|++||+.+++........... ..+..++|+|+|+.|+.++. ++...+| ++.++
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred eeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 3478999999888754333222110 02456899999999887775 4544444 44444
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=1.4e-16 Score=178.17 Aligned_cols=250 Identities=9% Similarity=0.058 Sum_probs=172.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc-CCCcccceEEEcccccceeEEEEecCCCcEEEEEEe-----------
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------- 462 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~----------- 462 (1092)
+...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+++++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 34568889999999999999888 89999997 665332 1111111 235678999999853355553
Q ss_pred --CCCcEEEEECC-CCceeEEEe----cCCcCeEEEeecccCCccEEEEEe-cCCeEEEEEcC-CCCceE--Eec--CCC
Q 001363 463 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARV--DYD--APG 529 (1092)
Q Consensus 463 --~d~~i~vwd~~-~~~~~~~~~----~~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~~~--~~~--~~~ 529 (1092)
.++++.+|++. +|+....+. .+...+.+++|++ ||+++++++ .++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 466654443 2456788888854 677777765 46899999998 554322 232 235
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeEEE---EEeeccc----cCC------ceEEEE-EcCCCCEE
Q 001363 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI 593 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~----~~~------~v~~~~-~~~~~~~l 593 (1092)
..+..++|+|||++++++.. .++.|.+|+.. +++... .+..... +.. .+..++ |+|+|+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 57889999999999988763 24568887654 565432 2222110 011 478899 99999998
Q ss_pred EEEeCC-C-----cEEEEECC-CCceEEE---EeCCCCCCCCceEEEcc---CCCEEEEEeCC-CeEEEEECCCC
Q 001363 594 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES 654 (1092)
Q Consensus 594 ~~~s~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iw~~~~~ 654 (1092)
+++..+ + .|.+|++. +++.... .... ...+..++|+| +|++|+++..+ +.|.+|+....
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876543 2 89999996 6665432 2222 22467899999 89999999864 89999998765
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=4.9e-16 Score=172.69 Aligned_cols=313 Identities=10% Similarity=0.099 Sum_probs=209.9
Q ss_pred CccEEEEEe------cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec------CCCCceeEEEEeCCCC
Q 001363 498 NIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEG 565 (1092)
Q Consensus 498 ~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~------~~~~~~~i~iwd~~~~ 565 (1092)
++++++... .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445555543 3789999999888877666655444 8999999999998863 1223677999999999
Q ss_pred eEEEEEeeccc---cCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEE-EeCCCCCCCCceEEEccCC-CEEE
Q 001363 566 AIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLA 638 (1092)
Q Consensus 566 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~ 638 (1092)
+.+..+..... +......++++|+|++++++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 99888764320 1134667899999999999863 68999999999988887 65432 2235677765 6788
Q ss_pred EEeCCCeEEEEECCC-CceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceecccc
Q 001363 639 VIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 717 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~ 717 (1092)
+.+.||.+.+|+... ++...... ...+|+...
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~-----------------------------------------------~~~~~~~~~ 200 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR-----------------------------------------------SKQMFSVKD 200 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE-----------------------------------------------CCCCSCTTT
T ss_pred EECCCCcEEEEEECCCCcEeeecc-----------------------------------------------ccceEcCCC
Confidence 888999999998764 32221100 001111110
Q ss_pred ccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCC
Q 001363 718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797 (1092)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 797 (1092)
.. ..+.+++++..++..+.++.+.++++....... +..|........ ...
T Consensus 201 -----------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~---~~~ 250 (361)
T 2oiz_A 201 -----------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK---AKN 250 (361)
T ss_dssp -----------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH---HTT
T ss_pred -----------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc---ccc
Confidence 00 011224555555555666777777764321100 000111000000 000
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe------------CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001363 798 DSNSQEAVPCFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865 (1092)
Q Consensus 798 ~~~~~~~v~~~~~s~dg~~l~~~s------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 865 (1092)
-.......++|+||++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+| |+++|++++.
T Consensus 251 --~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~- 324 (361)
T 2oiz_A 251 --WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG- 324 (361)
T ss_dssp --CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-
T ss_pred --cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-
Confidence 0011122378999988777653 2479999999999999998776 99999999 8889998887
Q ss_pred CcEEEEEcCCc--eeeEeeccccCCeEEEEEcCCCC
Q 001363 866 STILIYNARSS--EVISKLEGHSKRVTGLVFSDALN 899 (1092)
Q Consensus 866 g~v~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~ 899 (1092)
+.|.+||..++ +.+..+..+......++++|||+
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999999 99999877888889999999986
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=2.1e-14 Score=167.33 Aligned_cols=328 Identities=11% Similarity=0.115 Sum_probs=223.6
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceEEEEeCCCCCCCCceEEEc
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
++.|.++|..+++.+..+... ..+..+.|+||++++++++.++.|.+||+. +++.+..+.... ....++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s 248 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETS 248 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEc
Confidence 678999999999999888753 356789999999999999999999999996 888888877543 25789999
Q ss_pred ----cCCCEEEEEeC-CCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeecc
Q 001363 632 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 706 (1092)
Q Consensus 632 ----~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 706 (1092)
|||++++++.. ++.+.++|..+.+.+..+......+ ++.
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~-----------------------------~~~------- 292 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY-----------------------------DEQ------- 292 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT-----------------------------TTC-------
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc-----------------------------ccc-------
Confidence 69998888765 5999999988877665443110000 000
Q ss_pred ccccceeccccccCccccccccCCccc-cccEEEEEEecCCcEEEEe-ecCCeeEEEeecCCCcCcCcccccccCCcccc
Q 001363 707 ENKSEVEKPLFARPSECQSLLLPSKVK-ANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 784 (1092)
Q Consensus 707 d~~i~lw~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 784 (1092)
..| ...+..+.+++++..++.. ...|.+.++++.....
T Consensus 293 ------------------------~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~---------------- 332 (567)
T 1qks_A 293 ------------------------EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN---------------- 332 (567)
T ss_dssp ------------------------CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE----------------
T ss_pred ------------------------cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc----------------
Confidence 001 1246667777776554444 4458888877543210
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC-----CCCCeEEEEEcCCCCC
Q 001363 785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNN 857 (1092)
Q Consensus 785 ~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~ 857 (1092)
+....+ ........+.|+|||++++++. ++.|.++|+.+++.+..+.. |.+.-..+ ++|+.+.
T Consensus 333 ------~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~ 402 (567)
T 1qks_A 333 ------LKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGP 402 (567)
T ss_dssp ------EEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEE
T ss_pred ------ceeeee---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCc
Confidence 111111 1233456789999999998886 58899999999998776643 33222222 6783355
Q ss_pred EEEEEe-CCCcEEEEEcCC-------ceeeEeeccccCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCce--
Q 001363 858 VIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI-- 920 (1092)
Q Consensus 858 ~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-------Dg~I~iwd~~~~~~-- 920 (1092)
+.+++. .++.|.++|..+ .+.+.++......-..+..+||+++|..... ..+|.|+|+.+.+.
T Consensus 403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g 482 (567)
T 1qks_A 403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDG 482 (567)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSS
T ss_pred EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccc
Confidence 555554 468999999988 5677887765444345788999999887663 35899999987511
Q ss_pred --eeeeeeecC--CCCcCCCCCceEEEEccCCCEEEEE-e-----CCcEEEEEcCCceeeeeec
Q 001363 921 --QTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWF 974 (1092)
Q Consensus 921 --~~~~~~~~~--~~~~~~~~~v~~l~~s~dg~~la~~-~-----d~~i~lwd~~~~~~~~~~~ 974 (1092)
.....+... .+.......+..+.|+|||+.+.++ . ++.|.|+|..+++.+..+.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 483 SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 111222210 0000011358899999999988774 2 6889999999999877643
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=1.4e-15 Score=185.61 Aligned_cols=295 Identities=10% Similarity=0.002 Sum_probs=196.1
Q ss_pred eecccCCCCceEEeecCCCceEEEEE--cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEE-----
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN----- 400 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg--~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~----- 400 (1092)
..+.+|...|..++|++++- +++++ +.++...||....+..... +..|...+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~ 76 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE 76 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred HHHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence 45678999999999999865 56666 5578899999654443332 445655555
Q ss_pred ----EEEEC--CCCCE-EEEEeC-CCEEEEEEcc--C-CCcccceEEEcc-----cccceeEEEEecCCCcEEEEEEeCC
Q 001363 401 ----RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD 464 (1092)
Q Consensus 401 ----~l~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~~~~s~d~~~l~l~s~~~d 464 (1092)
..+|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|||||+ .|++++.|
T Consensus 77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~ 150 (662)
T 3azo_A 77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE 150 (662)
T ss_dssp TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence 56565 99999 887654 4556666665 3 43 22 3444 677899999999999 67766665
Q ss_pred ----------CcEEEEECCC------CceeEEEe-cCCcCeEEEeecccCCccEEEEEecC--------CeEEEEEcC-C
Q 001363 465 ----------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYD-S 518 (1092)
Q Consensus 465 ----------~~i~vwd~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~d--------g~i~vwd~~-~ 518 (1092)
..|++||+.+ ++ ...+. .+...+..++| ++||++|+.++.+ ..|.+||+. +
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 5899999988 54 44555 55666777777 4578899887755 379999998 4
Q ss_pred C---CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC-----ceEEEEEcCCC
Q 001363 519 L---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAK 590 (1092)
Q Consensus 519 ~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~ 590 (1092)
+ ........+...+..++|+|||+.++++.. ++...|++||..+++.......+..... .+..++|+|++
T Consensus 228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred CcccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence 5 233333344678899999999995555433 3344789999878876554443321000 14678899999
Q ss_pred CEEEEEeCCCcEEEE--ECCCCceEEEEeCCCCCCCCceEEEccCCCE--EEEEeCCC--eEEEEECCCCceee
Q 001363 591 DQILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSVD 658 (1092)
Q Consensus 591 ~~l~~~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iw~~~~~~~~~ 658 (1092)
..+++++. +.+++| |..+++ +..+..+. ..+..+ +++++.. ++.++.+. .|.+++..+++...
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred EEEEEEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 99999988 999999 655555 55555442 234444 1444443 33444454 45556666665443
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=3.5e-15 Score=165.92 Aligned_cols=262 Identities=10% Similarity=0.118 Sum_probs=177.9
Q ss_pred CceEEeecCCCceEEEEE--------cCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 336 SPMSMDFHPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg--------~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
.+..+++ ||++++.+. ..++.|.+||+.+++... + ..+..++||||
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD 69 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD 69 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence 5677788 898655442 125679999998876432 2 46788999999
Q ss_pred CCEEEEEeCC---C--EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-------------------
Q 001363 408 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------------------- 463 (1092)
Q Consensus 408 g~~las~~~d---~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~------------------- 463 (1092)
|++||+++.+ + .|.+|++.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC--
T ss_pred CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceeec
Confidence 9999988653 3 47888888765332 223334 999999999994 555442
Q ss_pred --------CCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCC-------eEEEEEcCCCCceEEecCC
Q 001363 464 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP 528 (1092)
Q Consensus 464 --------d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-------~i~vwd~~~~~~~~~~~~~ 528 (1092)
...|.+||+.+++.+..+.. . .+..++|+ +|| +++++..++ ...+|.+++ .....+..+
T Consensus 143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~~~~l~~~ 216 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWED-GKEEKMFEK 216 (347)
T ss_dssp -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEET-TEEEEEEEE
T ss_pred CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeCC-CceEEeccC
Confidence 25799999999887555654 3 77788885 467 777776542 445665553 333333333
Q ss_pred CCceEEEEEccCCCEEEEEecCCC----CceeEEEEeCCCCeEEEEEeeccccCCceEE-EEEcCCCCEEEEEeCCCcEE
Q 001363 529 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 529 ~~~i~~~~~s~dg~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~s~dg~i~ 603 (1092)
..+..+ +|||++|+.++.... ....|++|| +++.......+. ..+.. +.|+ ++ .+++++.++.++
T Consensus 217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence 444443 999999988775331 245799999 666544444433 56775 8999 88 888899999999
Q ss_pred EEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE-EEEECC
Q 001363 604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP 652 (1092)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iw~~~ 652 (1092)
+| +.+++....... ...+..++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 876665444432 23578899999 677777776654 677665
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=9e-14 Score=161.96 Aligned_cols=325 Identities=13% Similarity=0.141 Sum_probs=219.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC--CCceeeecccccC
Q 001363 588 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSD 665 (1092)
Q Consensus 588 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~ 665 (1092)
|.+..+++...++.|.++|..+++.+..+.... .+..++|+|||+++++++.++.|.+||+. +.+.+..+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---- 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---- 237 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence 334456667789999999999999999887543 35689999999999999999999999985 443332221
Q ss_pred ceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEe--
Q 001363 666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-- 743 (1092)
Q Consensus 666 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-- 743 (1092)
.......++|+
T Consensus 238 -------------------------------------------------------------------~G~~P~~ia~s~~ 250 (567)
T 1qks_A 238 -------------------------------------------------------------------IGSEARSIETSKM 250 (567)
T ss_dssp -------------------------------------------------------------------CCSEEEEEEECCS
T ss_pred -------------------------------------------------------------------cCCCCceeEEccc
Confidence 11224578888
Q ss_pred --cCCcEEEEeecC-CeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCC------CC-CCCeeEEEEecC
Q 001363 744 --NGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS------NS-QEAVPCFALSKN 813 (1092)
Q Consensus 744 --~~g~~l~~~~~d-g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~------~~-~~~v~~~~~s~d 813 (1092)
|||++++++... +.+.++|.... +.+......+. .| ...+..+.++++
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~----------------------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~ 308 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETL----------------------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHY 308 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTC----------------------CEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCC----------------------cEEEEEeccccccccccccCCCceEEEEEcCC
Confidence 699888777654 78888774332 21222111100 01 236778999998
Q ss_pred CCEEEEEe--CCeEEEEEcCCceee--EEecCCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEEcCCceeeEeecc----
Q 001363 814 DAYLFSAS--GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG---- 884 (1092)
Q Consensus 814 g~~l~~~s--dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~~---- 884 (1092)
+..++... .|.|.++|..+.+.. ..+ ........+.|+| ++++++++. .++.|.++|+.+++.+..+..
T Consensus 309 ~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 309 RPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 77666554 489999998865432 222 2334567899999 788776655 578999999999988766543
Q ss_pred -ccCCeEEEEEcCCCCEE-EEEe-CCCcEEEEEcCCCc-----eeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe-
Q 001363 885 -HSKRVTGLVFSDALNIL-VSSG-GDAQIFVWDVDGWG-----IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 955 (1092)
Q Consensus 885 -h~~~V~~l~~spdg~~l-~s~s-~Dg~I~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~- 955 (1092)
|.+.-.. .++|++..+ ++.. .++.|.++|..+.. ......+....+ .-..+.++|+++++.+..
T Consensus 387 Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~------g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 387 PHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG------GSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp BCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS------CCCCEECCTTCSEEEEECT
T ss_pred CCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC------CCEEEEeCCCCCeEEEecC
Confidence 4332222 257875554 4443 46899999998732 111223332211 223577899999998854
Q ss_pred -------CCcEEEEEcCCc-----eee-eeec-------cCCCCCEEEEEEecCCCEEEEEE-----CCCcEEEEEcCCC
Q 001363 956 -------ETHLAIYEAEEL-----TCL-KQWF-------PISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNL 1010 (1092)
Q Consensus 956 -------d~~i~lwd~~~~-----~~~-~~~~-------~~h~~~v~~l~fs~dg~~l~t~~-----~Dg~i~vwd~~~~ 1010 (1092)
.++|.++|+.+. ... ..+. ..-...+..+.|++||+++.++. .++.|.|+|..++
T Consensus 460 ~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 460 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 358999999877 211 2211 11246789999999999888763 2789999999999
Q ss_pred ceEEeec
Q 001363 1011 EVQCRIL 1017 (1092)
Q Consensus 1011 ~~~~~~~ 1017 (1092)
++..++.
T Consensus 540 ~~~~~i~ 546 (567)
T 1qks_A 540 ELKHVIK 546 (567)
T ss_dssp EEEEEEC
T ss_pred eEEEEeC
Confidence 9988776
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.69 E-value=9.7e-16 Score=174.07 Aligned_cols=244 Identities=9% Similarity=-0.013 Sum_probs=166.0
Q ss_pred EEEEEECCCCCEEEEEeCC---CEEEEEEccCCCcccceEEEcccccce-eEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001363 399 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 474 (1092)
+..++|||||++||..... ..|.+||+.+++... +..+...+ ..+.|+|||+ .|+.++.++.|++||+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence 6778999999999887543 478899998875332 33333333 3488999999 788888888999999999
Q ss_pred CceeEEEecCCcCeEE---Eee--------------cccCCccEEEEE-----ecCCeEEEEEcCCCCceEEecCCCCce
Q 001363 475 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC 532 (1092)
Q Consensus 475 ~~~~~~~~~~~~~v~~---i~~--------------~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~i 532 (1092)
++.......+...... +++ ..+++++.++.. ..+..|.+||+.+++..... .+...+
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~ 190 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL 190 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence 8876666545443322 111 123344444433 35668999999887654443 345578
Q ss_pred EEEEEcc-CCCEEEEEecCCCC--ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEE
Q 001363 533 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI 604 (1092)
Q Consensus 533 ~~~~~s~-dg~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~i 604 (1092)
..+.|+| +++.++.++..... ...|++||..+++......... ...+..+.|+|++++|+.++.+ +.|++
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 8999999 88888777642110 1569999987765433332111 1357889999999988776543 45999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEEe----------------CCCeEEEEECCCCce
Q 001363 605 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS 656 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iw~~~~~~~ 656 (1092)
||+.+++......... .. ++|+| +|+++++++ .++.|++|+..+++.
T Consensus 269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 9999887655443321 23 89999 999888765 347899999987653
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=2.7e-14 Score=153.78 Aligned_cols=242 Identities=10% Similarity=0.092 Sum_probs=174.9
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecC------CCCCeEEEEEc-CCCCCEEEEEeC-CCcEEEE
Q 001363 801 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY 871 (1092)
Q Consensus 801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-~~d~~~lasg~~-dg~v~iw 871 (1092)
+-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..++++ + +++++++... ++.|++|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence 456688999999999888765 6899999987 666666542 33578899994 5 7777666643 8899999
Q ss_pred EcCCceeeEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCE
Q 001363 872 NARSSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950 (1092)
Q Consensus 872 d~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 950 (1092)
| .+++.+..+. .+...+.+++++|+|+++++...++.|.+||..... .. .+... +.. ..+..++++++|++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~--~~~~~-~~~---~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-LH--KFGCS-KHL---EFPNGVVVNDKQEI 177 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EE--EEECT-TTC---SSEEEEEECSSSEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-EE--EeCCC-Ccc---CCcEEEEECCCCCE
Confidence 9 5677776664 345678999999999988888888999999975422 11 12111 111 24789999999997
Q ss_pred EEEE-eCCcEEEEEcCCceeeeeec-cCCCCCEEEEEEecCCCEEEEEECCC-cEEEEEcCCCceEEeeccccccCCCCc
Q 001363 951 FLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1027 (1092)
Q Consensus 951 la~~-~d~~i~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~t~~~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1027 (1092)
+++. .++.|++||.. ++.+..+. .++...+..++++++|+++++...++ .|.+|+. +++.+..+...
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-------- 247 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK-------- 247 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------
Confidence 7774 57899999974 55554432 22346789999999999888887776 9999995 56666555421
Q ss_pred cccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001363 1028 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus 1028 ~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
.....+.+++++| ++.++++ +.|++|++|++....
T Consensus 248 ~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 248 VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence 1112456788998 4665555 689999999986544
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=1.2e-14 Score=159.85 Aligned_cols=248 Identities=12% Similarity=0.095 Sum_probs=181.6
Q ss_pred CCCeeEEEEecCCCEEEEEeCC-------------------------eEEEEEcCCceeeEEec-CCCCCeEEEEEcCCC
Q 001363 802 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD 855 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d 855 (1092)
-..+.+++++|+|+++++...+ .|.+||..+++.+..+. .+......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4568999999999999887743 69999999998877765 3446789999999 8
Q ss_pred CCEEEEEeCCCcEEEEEcCCce-eeEee---------ccccCCeEEEEEcC-CCCEEEEEe-CCCcEEEEEcCCCceeee
Q 001363 856 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC 923 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~sp-dg~~l~s~s-~Dg~I~iwd~~~~~~~~~ 923 (1092)
++++++...++.|++|+..... .+..+ .++......++++| ++.++++.+ .++.|++|+.+. +....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 8888888889999999986542 45555 34556789999999 788888886 689999999543 32221
Q ss_pred eeeecC-----CCCcCCCCCceEEEEccC-CCEEEE-EeCCcEEEEEcCCceeeeeec-cCCCCCEEEEEEec------C
Q 001363 924 RSLQTP-----DGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------D 989 (1092)
Q Consensus 924 ~~~~~~-----~~~~~~~~~v~~l~~s~d-g~~la~-~~d~~i~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~------d 989 (1092)
...... .+.. .....++++|+ |.++++ ..++.|++||..+|+.+..+. ..+...+..++|+| +
T Consensus 181 ~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~ 257 (329)
T 3fvz_A 181 WGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN 257 (329)
T ss_dssp ECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred eccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence 110000 0111 24789999999 555555 367789999999888887653 34567889999999 3
Q ss_pred CCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001363 990 CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 990 g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
|+..++...+.+|++|++.+|+.+..+.... ...-.+..++++| ++.++++...++.|++|++..
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred CCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 3333333344589999999999887764211 1112456789999 578888888999999999854
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=1.8e-14 Score=158.26 Aligned_cols=248 Identities=11% Similarity=0.085 Sum_probs=184.1
Q ss_pred CCceEEeecCCCceEEEEEcCC------------------------CcEEEEecCCCCeeEEeeeeeeecccccceeeEe
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 390 (1092)
+.|.+++++|+|+ ++++.+.+ ++|.+||..+|+.+...
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------- 85 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----------------- 85 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence 4899999999998 67777766 47999999888866420
Q ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC-cccceEEE---------cccccceeEEEEec-CCCcEEEE
Q 001363 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI 459 (1092)
Q Consensus 391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~~---------~~h~~~v~~~~~s~-d~~~l~l~ 459 (1092)
-.++-..+..++++|+|+++++...++.|++||..+.. .+. .+ .++......++|+| ++. +++
T Consensus 86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 22455688999999999988888889999999986542 222 33 24445688999999 677 677
Q ss_pred EEe-CCCcEEEEECCCCceeEEEecCC----------cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--
Q 001363 460 TCG-DDKTIKVWDAVTGSRTYSFEGHG----------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-- 526 (1092)
Q Consensus 460 s~~-~d~~i~vwd~~~~~~~~~~~~~~----------~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-- 526 (1092)
+.+ .++.|++|| .+|+.+..+.... .....+++.+. .+.++++...++.|++|+.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 775 689999999 6788777774322 33778888543 26788888889999999998777666653
Q ss_pred CCCCceEEEEEccCCCEEEEEecC---CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001363 527 APGLGCTRMAYSANGRRLFSCGTS---KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~---~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 603 (1092)
.....+..++++| +..+...+.. ......|++||..+++.+..+.....+...+..++++|+|..+++...++.|+
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 3455788999999 4444333211 12245799999999999888753222236789999999997777788899999
Q ss_pred EEECCC
Q 001363 604 IWDMNK 609 (1092)
Q Consensus 604 iwd~~~ 609 (1092)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
No 178
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.68 E-value=2.9e-10 Score=141.04 Aligned_cols=586 Identities=9% Similarity=0.018 Sum_probs=338.1
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|+++.-.++|... .|+.+| +..||- ..... +...... . -.-....|.++...++|.+.+ |
T Consensus 43 n~v~~I~qD~~G~lW--igT~~G-L~ryDG---~~f~~-----~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi-g 104 (795)
T 4a2l_A 43 STVFSIDQDKRGNMW--FATYDG-VNKYDG---YAFTV-----YQHNEDD----P--NSIANDISRIVKTDSQGRVWI-G 104 (795)
T ss_dssp SCEEEEEECTTSCEE--EEETTE-EEEECS---SCEEE-----ECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-E
T ss_pred ceeEEEEEcCCCCEE--EeecCc-CcccCC---CceEE-----EeCCCCC----C--CcccccceeEEEECCCCCEEE-E
Confidence 489999999999644 444555 566663 22211 1100000 0 000246799999999987665 4
Q ss_pred eCCCEEEEEEccCCCcccceEEEccccc----ceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC-CcC-e
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-V 488 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~-v 488 (1092)
+.+| +..||..+++.. .+..... .|.++...++|. +.+ ++. +.|..||..+++.......+ ... |
T Consensus 105 T~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i 175 (795)
T 4a2l_A 105 TRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTI 175 (795)
T ss_dssp ESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCC
T ss_pred eCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcce
Confidence 4566 899998775421 2222111 288999888887 343 444 45899998776533211111 112 6
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
.++... .++. +..++.++-+..|+..+.+..... ......|.++...++|...+.... .-+..||..+++.
T Consensus 176 ~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~-----~Gl~~~~~~~~~~ 247 (795)
T 4a2l_A 176 ASTLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEG-----AGLFLINPKTKEI 247 (795)
T ss_dssp EEEEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBS-----SCEEEEETTTTEE
T ss_pred EEEEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECC-----CCeEEEeCCCCeE
Confidence 666653 3444 445666556888887665443221 123456888888888876665422 1289999888765
Q ss_pred EEEEeec----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----CCCCCCceEEEccCCCEEE
Q 001363 568 KRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 568 ~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~ 638 (1092)
....... ......|.++...+++.. ..|+.+ -|.+||..++......... -....|.++...++|. |.
T Consensus 248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 324 (795)
T 4a2l_A 248 KNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MW 324 (795)
T ss_dssp EEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EE
T ss_pred EEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EE
Confidence 4432221 112357999999888764 445555 5899998877654432211 0123577888888876 55
Q ss_pred EEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001363 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~ 718 (1092)
+|+.++-|..|+..+.... .... . +.
T Consensus 325 igt~~~Gl~~~~~~~~~~~-~~~~----------~----------------------~~--------------------- 350 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRFK-NIRN----------I----------------------PY--------------------- 350 (795)
T ss_dssp EEESSSCEEEECGGGGSSE-EECC----------C----------------------TT---------------------
T ss_pred EEECCCCeEEeCCCcccce-EEcC----------C----------------------CC---------------------
Confidence 6777677777765433111 0000 0 00
Q ss_pred cCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCC
Q 001363 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798 (1092)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 798 (1092)
+.......|.++...++|. +..++.++-+..|+...... ..+....+. .. ..+
T Consensus 351 ----------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-~~-~~l-- 403 (795)
T 4a2l_A 351 ----------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE-SA-RGI-- 403 (795)
T ss_dssp ----------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC--------CC--
T ss_pred ----------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC-cc-cCC--
Confidence 0001234688888888887 44455555566665332211 001000000 00 000
Q ss_pred CCCCCCeeEEEEecCCC-EEEEEeCCeEEEEEcCCceeeEEec----CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEc
Q 001363 799 SNSQEAVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~-~l~~~sdg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 873 (1092)
....|.+++..++|+ +.+...++.+..||..+++...... .+...|.++...+ ++.+.+ |+.+ -+.+|+.
T Consensus 404 --~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~ 478 (795)
T 4a2l_A 404 --GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNP 478 (795)
T ss_dssp --SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEET
T ss_pred --CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeC
Confidence 245789999999998 5554445789999998776443321 1345789999988 676555 4554 5889998
Q ss_pred CCceeeEeec------cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC
Q 001363 874 RSSEVISKLE------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 874 ~~~~~~~~l~------~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
.+++...... -+...|.++...++|++.+... . -|..|+..+++. . ..............|.++...++
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~--~~~~~~~~~l~~~~i~~i~~d~~ 553 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-Q--KASILPVSNVTKLFTNCIYEASN 553 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-E--ECCCSCSCGGGGSCEEEEEECTT
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-E--EecCCCCCCCCCCeeEEEEECCC
Confidence 8776433221 1236799999999988777554 4 488999887543 1 11000000111136889999999
Q ss_pred CCEEEEEeCCcEEEEEcCCceeeeee-ccC-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCC
Q 001363 948 QTRFLLVHETHLAIYEAEELTCLKQW-FPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus 948 g~~la~~~d~~i~lwd~~~~~~~~~~-~~~-h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
|.+.+++.. .+..||..+++...-. ..+ ....|.++...++|.+.+++ . +-|..|+..++... .+....-++..
T Consensus 554 g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~~ 629 (795)
T 4a2l_A 554 GIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQSN 629 (795)
T ss_dssp SCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSCS
T ss_pred CCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCccc
Confidence 997776554 7889998776543311 111 14568899999999876655 3 55788998877543 34322222222
Q ss_pred CccccccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1026 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
.+..-++..++ + ..|..|+.+|- ..++.
T Consensus 630 ----~f~~~~~~~~~-~-G~l~~g~~~Gl-~~~~p 657 (795)
T 4a2l_A 630 ----QFNTASYCRTS-V-GQMYFGGINGI-TTFRP 657 (795)
T ss_dssp ----CEEEEEEEECT-T-SCEEEEETTEE-EEECG
T ss_pred ----cCccCceeECC-C-CeEEEecCCce-EEEcH
Confidence 22223455665 3 45777777774 45554
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=1.7e-14 Score=176.07 Aligned_cols=249 Identities=11% Similarity=0.002 Sum_probs=171.6
Q ss_pred ecCCCCcEEEEEECCCCCEEEEE--eCCCEEEEEEccCCCcccceEEEccccccee---------EEEEe--cCCCcEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQISV 458 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~--~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~---------~~~~s--~d~~~l~l 458 (1092)
+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+ |
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~-l 94 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL-L 94 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-E
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-E
Confidence 66799999999999887777777 558889999975443332 4566666666 66666 999941 4
Q ss_pred EEEe-CCCcEEEEECC--CCceeEEEec-----CCcCeEEEeecccCCccEEEEEecC----------CeEEEEEcCCC-
Q 001363 459 ITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDSL- 519 (1092)
Q Consensus 459 ~s~~-~d~~i~vwd~~--~~~~~~~~~~-----~~~~v~~i~~~~~~~~~~l~s~~~d----------g~i~vwd~~~~- 519 (1092)
+.++ .+..|.+|++. ++.....+.. |...+.+++|+ +||+.|++++.+ ..|.+||+.+.
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL--PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE--TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC--CCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 4433 35667777765 2034455555 56678888885 477899988877 58999999872
Q ss_pred ----CceEEec-CCCCceEEEEEccCCCEEEEEecCCC----CceeEEEEeCC-CC---eEEEEEeeccccCCceEEEEE
Q 001363 520 ----GARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVHF 586 (1092)
Q Consensus 520 ----~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~~ 586 (1092)
.....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++. ..+..+.|
T Consensus 173 ~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~~ 249 (662)
T 3azo_A 173 AADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAEW 249 (662)
T ss_dssp TTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEEE
T ss_pred cccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceEE
Confidence 2334444 44567788999999999998875432 13579999998 57 4444444444 67899999
Q ss_pred cCCCCEEEEEeCCC--cEEEEECCCCceEEEEeCCCCC------CCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001363 587 DTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKILE 650 (1092)
Q Consensus 587 ~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 650 (1092)
+|||+.+++++.++ .|++||..+++.......+... ..+..++|+|+++++++++. +.++||.
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 99999777777788 6667777677655443322111 01456777777777777777 7777773
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.65 E-value=1.9e-13 Score=146.99 Aligned_cols=248 Identities=14% Similarity=0.154 Sum_probs=177.6
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE-CCCCC
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 409 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~-spdg~ 409 (1092)
.+|-..+.+++++|+|+ ++++...++.|.+||.. ++.+...... ....+|...+..+++ .++|+
T Consensus 26 ~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~-------------~~~~~~~~~p~~i~~~~~~g~ 90 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGEC-------------GKRDSQLLYPNRVAVVRNSGD 90 (286)
T ss_dssp TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECCB-------------SSSTTCBSSEEEEEEETTTTE
T ss_pred CCccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEeccc-------------CCCcccccCceEEEEEcCCCe
Confidence 35566899999999998 78888888999999987 5544321100 001234567899999 57777
Q ss_pred EEEEEeC-CCEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe--cCC
Q 001363 410 LLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG 485 (1092)
Q Consensus 410 ~las~~~-d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~ 485 (1092)
++++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||. +++.+..+. ++.
T Consensus 91 l~v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 91 IIVTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL 163 (286)
T ss_dssp EEEEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTC
T ss_pred EEEEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCcc
Confidence 7776643 78899999 4454333 332 3445689999999998 7788778899999995 566666664 344
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCceEEEEEccCCCEEEEEecCCCCce-eEEEEeC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGES-FLVEWNE 562 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~~~~~~~-~i~iwd~ 562 (1092)
..+..+++.+ ++.++++...++.|++||... +....+... ...+..++++++|+.+++... ++ .|.+||.
T Consensus 164 ~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~ 236 (286)
T 1q7f_A 164 EFPNGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ 236 (286)
T ss_dssp SSEEEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT
T ss_pred CCcEEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC
Confidence 5678888854 667888888899999999743 444444433 246889999999987777643 33 7999995
Q ss_pred CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001363 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
+++.+..+..+. ....+..++++|+++.+++ +.++.|++|+....
T Consensus 237 -~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 237 -DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred -CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 566777776543 1234789999999976555 67999999997653
No 181
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.65 E-value=4.8e-10 Score=139.06 Aligned_cols=535 Identities=8% Similarity=0.032 Sum_probs=319.0
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|.++...++|..++ |+. +.+..||..+++.... ... .......|.++...++|.+.+..
T Consensus 88 n~I~~i~~d~~g~lWi--gT~-~Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWI--GTR-DGLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIST 148 (795)
T ss_dssp SCEEEEEECTTSCEEE--EES-SCEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEEE
T ss_pred cceeEEEECCCCCEEE--EeC-CchheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEEE
Confidence 4799999999998333 344 4589999877653321 000 00000118888888888766654
Q ss_pred eCCCEEEEEEccCCCcccceEEEccc-ccc-eeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcCeEEE
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~-v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i 491 (1092)
.. .+..||..+++..... .++ ... |.++...+++. +..++.++.|..||..+++..... ......|.++
T Consensus 149 -~~-gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i 220 (795)
T 4a2l_A 149 -PE-GLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI 220 (795)
T ss_dssp -TT-EEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred -CC-ceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence 44 4889998765321100 011 123 88888888886 444565556999998877654321 1234567777
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~ 564 (1092)
... .++. +..++.++-+.+||..+.+....... ....|.++...++|...+... . -|.+||..+
T Consensus 221 ~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~~ 291 (795)
T 4a2l_A 221 LQQ--SPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEGT 291 (795)
T ss_dssp EEE--ETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETTT
T ss_pred EEc--CCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCCC
Confidence 653 3444 55555554578888766543322211 235689999998888666542 1 289999888
Q ss_pred CeEEEEEee----ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC--C--CCCCCceEEEccCCCE
Q 001363 565 GAIKRTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTL 636 (1092)
Q Consensus 565 ~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~~~~ 636 (1092)
+........ .......|.++...++|. +..|+.++-|..|+..++......... . ....|.+++..++|.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~- 369 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN- 369 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence 765443221 112246799999988876 666777778999987665543222111 0 123477888888776
Q ss_pred EEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccc
Q 001363 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~ 716 (1092)
|.+|+.++-|..|+..++.......... ..
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~---------------------------------~~----------------- 399 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQED---------------------------------ES----------------- 399 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------------------------------------------------------
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecCCC---------------------------------Cc-----------------
Confidence 5567777778888876543211100000 00
Q ss_pred cccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecC
Q 001363 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 796 (1092)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 796 (1092)
. . ......|.++...++|..|..++.++-+..|+...... ..+....
T Consensus 400 -------~-~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~--------- 446 (795)
T 4a2l_A 400 -------A-R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRN--------- 446 (795)
T ss_dssp --------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTT---------
T ss_pred -------c-c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCC---------
Confidence 0 0 00234578888888888455555555566666433211 1111000
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 001363 797 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILI 870 (1092)
Q Consensus 797 ~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~i 870 (1092)
.......|.++...++|.+.+... +.+.+||..+++....... ....|.++...+ ++.+.+ |+. +-+..
T Consensus 447 -~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~ 521 (795)
T 4a2l_A 447 -SQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSV 521 (795)
T ss_dssp -SCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEE
T ss_pred -CCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEE
Confidence 001345789999999998777665 5688999887655432211 235789999988 676655 444 45888
Q ss_pred EEcCCceeeEeec-------cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001363 871 YNARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 871 wd~~~~~~~~~l~-------~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 943 (1092)
|+..+++. .+. .....|.++...++|.+.++.. .| |..||..+++... .....+.. ...|.++.
T Consensus 522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~~---~~~~~gl~--~~~i~~i~ 592 (795)
T 4a2l_A 522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIKR---YNTTNGLP--NNVVYGIL 592 (795)
T ss_dssp EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEEE---ECGGGTCS--CSCEEEEE
T ss_pred EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEEE---eCCCCCCc--hhheEEEE
Confidence 99887765 222 2446799999999998776543 34 8889987754322 22222221 13588899
Q ss_pred EccCCCEEEEEeCCcEEEEEcCCceeeeeeccCC---CCCE--EEEEEecCCCEEEEEECCCcEEEEEcC
Q 001363 944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPI--SQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 944 ~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h---~~~v--~~l~fs~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
..++|.+.+++ ++.|..|+..+++... +.... ...+ .++...+||++++ |+.+| +..++..
T Consensus 593 ~d~~g~lWi~t-~~Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 593 EDSFGRLWLST-NRGISCFNPETEKFRN-FTESDGLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRPE 658 (795)
T ss_dssp ECTTSCEEEEE-TTEEEEEETTTTEEEE-ECGGGTCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECGG
T ss_pred ECCCCCEEEEc-CCceEEEcCCCCcEEE-cCCcCCCccccCccCceeECCCCeEEE-ecCCc-eEEEcHH
Confidence 99999877766 5668888887665432 21111 1222 4667788887655 66676 4555543
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=1.2e-13 Score=152.30 Aligned_cols=274 Identities=10% Similarity=0.023 Sum_probs=188.3
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|.+++|+|++. .++..+.++.+++|. ++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-SAVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGG-CSSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCcc-ceeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 4688999999987 466667788899992 332221 44566778999999999988888
Q ss_pred eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC----CcEEEEECCCCceeEEEe--cCCcCe
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV 488 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~--~~~~~v 488 (1092)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||.++++....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 888999999998875332 1224567899999999998 66666655 689999988877654443 234568
Q ss_pred EEEeecccCCccEEEEEec------CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001363 489 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~ 562 (1092)
..+++.+ ++.++++... .+.|..++....+... +......+..++|+|||+.++.+.. .++.|++||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8888854 6667776553 2455555554433322 2222235678999999997766542 1457999998
Q ss_pred CC-CeEEEEE-----eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCC----CCCCceEEEcc
Q 001363 563 SE-GAIKRTY-----QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK 632 (1092)
Q Consensus 563 ~~-~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~ 632 (1092)
.+ +.....+ .... ....+..++++++++.+++...++.|.+||. +++.+..+..+.. ...+.+++|+|
T Consensus 212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence 63 3322211 1111 0136788999999998888778899999998 5677777654421 11478999999
Q ss_pred CCCEEEEEeCCC
Q 001363 633 NGTLLAVIANEN 644 (1092)
Q Consensus 633 ~~~~l~~~~~dg 644 (1092)
+++.|++++.++
T Consensus 290 dg~~L~v~~~~g 301 (333)
T 2dg1_A 290 GTNQLIICSNDI 301 (333)
T ss_dssp TSCEEEEEEECG
T ss_pred CCCEEEEEeCcc
Confidence 987777766653
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=1.7e-13 Score=167.89 Aligned_cols=250 Identities=10% Similarity=-0.009 Sum_probs=175.6
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCCC-----EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc--
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~-- 466 (1092)
+|...+..++|||||++||.+..++ .|++||+.+++.... .+ ....+..++|+|||+ .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCccc
Confidence 4556789999999999999876543 899999999875442 12 222367899999999 5666666655
Q ss_pred --------------EEEEECCCCcee--EEEec--CCcCeEEEeecccCCccEEEEEec-----CCeEEEEEcCC-----
Q 001363 467 --------------IKVWDAVTGSRT--YSFEG--HGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS----- 518 (1092)
Q Consensus 467 --------------i~vwd~~~~~~~--~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~-----dg~i~vwd~~~----- 518 (1092)
|++|++.+++.. ..+.. |...+..+.| ++||++|+.++. +..|.+||+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 999999987632 22232 4555677777 557788887765 56899999986
Q ss_pred -CC-ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEE
Q 001363 519 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1092)
Q Consensus 519 -~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~ 594 (1092)
+. ....+..+...+.. .|+++|+.|+..+........|++||+.++.. ...+..+. ....+..+.|++++..++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence 42 34444444444444 58899999888775443467899999988742 24444443 013677889987777778
Q ss_pred EEeCCCc--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCc
Q 001363 595 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1092)
Q Consensus 595 ~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 655 (1092)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .++++.||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888875 566787778877777655 334677889999887665433 4789999998765
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.61 E-value=2.3e-13 Score=147.18 Aligned_cols=249 Identities=12% Similarity=0.052 Sum_probs=177.4
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
..+..+..+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.++++
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~ 76 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCL 76 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeE
Confidence 3445566666688999999999877889999999999999887 322 3346678999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEccCCCcccceEEEccc-ccceeEEEEecCCCcEEEEEE----e-------------CCCc
Q 001363 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITC----G-------------DDKT 466 (1092)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~----~-------------~d~~ 466 (1092)
+|+|+++++...++.|.+||..+++.........+. ...+..++++|+|+ ++++. + ..+.
T Consensus 77 ~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 77 NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcE
Confidence 999998888777789999999887643211111111 23567899999998 67763 2 1345
Q ss_pred EEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-CCCc---eEEecCCCCceEEEEEccCCC
Q 001363 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~---~~~~~~~~~~i~~~~~s~dg~ 542 (1092)
|..++.. ++ +..+..+......++|++ +++.+++.+.++.|.+|++. .+.. ...+......+..++++++|+
T Consensus 155 l~~~~~~-g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 155 VFRLAPD-GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp EEEECTT-SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred EEEECCC-CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence 6666654 44 444555666778888854 66777777888999999987 3332 223333344567899999998
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEE-cCCCCEEEEEeCCCcEEEEECCCCce
Q 001363 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1092)
..++. .+.|.+||.. ++.+..+..+. . +.+++| .|+++.|++++.++ +..++..+..+
T Consensus 231 l~v~~------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 231 IWASA------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEEEE------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EEEEc------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 76665 2349999986 77777777665 4 888999 58889999988764 55566666544
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.60 E-value=3.4e-13 Score=149.76 Aligned_cols=285 Identities=11% Similarity=0.040 Sum_probs=175.8
Q ss_pred ceEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC---Ce--
Q 001363 580 SVSVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE---NR-- 645 (1092)
Q Consensus 580 ~v~~~~~~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g~-- 645 (1092)
.+....+ ||++++... .++.|++||+.+++.... ..+..++|+|||++|+.++.+ +.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 4555666 777776542 256799999998875433 236889999999999987754 33
Q ss_pred EEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccc
Q 001363 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725 (1092)
Q Consensus 646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~ 725 (1092)
|.+|++.+++......
T Consensus 87 l~~~~~~~g~~~~l~~---------------------------------------------------------------- 102 (347)
T 2gop_A 87 IWVADLETLSSKKILE---------------------------------------------------------------- 102 (347)
T ss_dssp EEEEETTTTEEEEEEE----------------------------------------------------------------
T ss_pred EEEEECCCCceEEEEc----------------------------------------------------------------
Confidence 6666766543221110
Q ss_pred cccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001363 726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805 (1092)
Q Consensus 726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v 805 (1092)
... +..++|+|||+.|+.++.+.. .. . ....+
T Consensus 103 -------~~~-~~~~~wspdg~~l~~~~~~~~-------~~---------------------~------------~~~~~ 134 (347)
T 2gop_A 103 -------AKN-IRSLEWNEDSRKLLIVGFKRR-------ED---------------------E------------DFIFE 134 (347)
T ss_dssp -------ESE-EEEEEECTTSSEEEEEEECCC-------C----------------------------------------
T ss_pred -------CCC-ccceeECCCCCEEEEEEccCC-------Cc---------------------C------------CcEEE
Confidence 112 677889999998887765410 00 0 00011
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-------cEEEEEcCCcee
Q 001363 806 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-------TILIYNARSSEV 878 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-------~v~iwd~~~~~~ 878 (1092)
..+.+..+|.-+.......|.+||+.+++.+..+.. . .+..++|+| |+ +++++..++ ...||.+.+++.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCce
Confidence 122233344332222235699999998887455544 3 788999999 78 888776542 345554445553
Q ss_pred eEeeccccCCeEEEEEcCCCCEEEEEeCCC--------cEEEEEcCCCceeeeeeeecCCCCcCCCCCceE-EEEccCCC
Q 001363 879 ISKLEGHSKRVTGLVFSDALNILVSSGGDA--------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQT 949 (1092)
Q Consensus 879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~s~dg~ 949 (1092)
..+..+ ..+..+ ||||++|+.++.++ .|.+|| +++. .....++. ..+.. ++|+ ||
T Consensus 211 -~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-----~~l~~~~~---~~~~~~~~~s-dg- 274 (347)
T 2gop_A 211 -EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-----MGILDEVD---RGVGQAKIKD-GK- 274 (347)
T ss_dssp -EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-----EESSTTCC---SEEEEEEEET-TE-
T ss_pred -EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-----EeccccCC---cccCCccEEc-Cc-
Confidence 444445 555554 99999998887543 577777 4331 22222222 24665 8999 88
Q ss_pred EEEE-EeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcE-EEEEcCCCc
Q 001363 950 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEASNLE 1011 (1092)
Q Consensus 950 ~la~-~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i-~vwd~~~~~ 1011 (1092)
++++ ..++.++|| +.+++... +. .+...|.+++|+| .++++++.++.. .+|.++ ++
T Consensus 275 ~~~~~~~~~~~~l~-~~~g~~~~-~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 275 VYFTLFEEGSVNLY-IWDGEIKP-IA-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EEEEEEETTEEEEE-EESSSEEE-EE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred EEEEEecCCcEEEE-EcCCceEE-Ee-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 6666 577889999 87665433 23 3477899999999 678888877765 888887 54
No 186
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=8.9e-09 Score=127.35 Aligned_cols=588 Identities=12% Similarity=0.103 Sum_probs=335.5
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|+++.-.++|...+ |+.+| +..||-.+ .. .+........ . ..-....|.++...++|..|-+|
T Consensus 19 n~V~~I~qD~~G~lWi--gT~~G-L~ryDG~~---f~-----~~~~~~~~~~--~--~~l~~n~I~~i~~d~~g~~lWig 83 (781)
T 3v9f_A 19 NYVLSITQDKQGFLWF--ATEEG-LNKFDGTR---FI-----TYYKEEQSSS--V--QSITGNELNEVYTDPVQPVIWIA 83 (781)
T ss_dssp SBEEEEEECTTSCEEE--EESSC-EEEECSSS---EE-----EECCCSSCSS--S--CCCSCSCEEEEEECSSSSEEEEE
T ss_pred CEeEEEEECCCCCEEE--ccCCc-CccccCCc---eE-----EEEcCCCCCc--c--ccccccccceEEEcCCCCEEEEE
Confidence 4899999999996444 44555 66676332 21 1110000000 0 00023569999999988845567
Q ss_pred eCCCEEEEEEccCCCcccceEEEc-----c---cccceeEEEEec--CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEID-----A---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG- 483 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~-----~---h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~- 483 (1092)
+.++-+..||..+++.. .+. . ....|.++.... ++. +..++.++.|..+|..+++.. .+..
T Consensus 84 t~~~Gl~~~d~~~~~f~----~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~-~~~~~ 155 (781)
T 3v9f_A 84 TQRAGLNAYNYETQSFS----VYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFT-HYNKS 155 (781)
T ss_dssp ESSSCEEEEETTTTEEE----EECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEE-EESTT
T ss_pred eCCCCcceECCCCCeEE----eeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEE-eeccC
Confidence 77734999998875421 121 0 123588888777 665 444554556899998776543 2321
Q ss_pred -----CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-------CCCCceEEEEEccCCCEEEEEecCC
Q 001363 484 -----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 484 -----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
....|.++... .++ .|..++.++-+..||..+.+...... .....|.++...++|...+...
T Consensus 156 ~~~~l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~--- 229 (781)
T 3v9f_A 156 TVPALPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS--- 229 (781)
T ss_dssp TCTTCSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET---
T ss_pred cccCCCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC---
Confidence 12346666553 344 45556666567888876654322111 1234688898888888766542
Q ss_pred CCceeEEEEeCCCCeEEEEEeec----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe-------CC-
Q 001363 552 EGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG- 619 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------~~- 619 (1092)
. -+.+||..+++........ ......|.++...+++. +..|+..+-|.++|..++....... ..
T Consensus 230 --~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~ 305 (781)
T 3v9f_A 230 --K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGD 305 (781)
T ss_dssp --T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCS
T ss_pred --C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCC
Confidence 2 3899998877654332211 11235789998887764 6667765678899988765432221 10
Q ss_pred ----CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCC
Q 001363 620 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1092)
Q Consensus 620 ----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (1092)
-....|.++...++|. |.+|+.++-|..++........ ... .+
T Consensus 306 ~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~~--------------------- 352 (781)
T 3v9f_A 306 NNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------SP--------------------- 352 (781)
T ss_dssp STTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----------------------------------
T ss_pred CCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------Cc---------------------
Confidence 1123477788888776 5567766777777765432111 000 00
Q ss_pred CCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccc
Q 001363 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 775 (1092)
Q Consensus 696 ~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~ 775 (1092)
.. ..+.......|.++...++|... .++.++-+..|+......
T Consensus 353 -~~----------------------------~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~------- 395 (781)
T 3v9f_A 353 -TQ----------------------------MNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVA------- 395 (781)
T ss_dssp --C----------------------------CCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEE-------
T ss_pred -cc----------------------------cccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeE-------
Confidence 00 00000023457888888888744 455444566665322110
Q ss_pred cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec--CCCCCeEEEEEcC
Q 001363 776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNP 853 (1092)
Q Consensus 776 ~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~ 853 (1092)
..+.... ......|.+++..++|.+.+...++.+..++..+++...... .....|.+++..+
T Consensus 396 -----~~~~~~~-----------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 459 (781)
T 3v9f_A 396 -----IYNKENR-----------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK 459 (781)
T ss_dssp -----ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT
T ss_pred -----EEccCCC-----------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC
Confidence 0000000 013467889999888887775546779999987776433221 2346789999887
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCceeeEeeccc-----cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001363 854 HDNNVIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 928 (1092)
Q Consensus 854 ~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 928 (1092)
++.+ ..|+. +-+..||..+++........ ...|.++...++|.+.+.....| |..||..+++... +..
T Consensus 460 -~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~ 532 (781)
T 3v9f_A 460 -NKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQ 532 (781)
T ss_dssp -TSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECT
T ss_pred -CCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccC
Confidence 6654 44665 55889998876543322212 46799999999888766443345 7888887654222 222
Q ss_pred CCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccC---CCCCEEEEEEecCCCEEEEEECCCcEEEE
Q 001363 929 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 929 ~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~Dg~i~vw 1005 (1092)
..+. ....|.++...++|.+.+++.+|-+..||..+++... +... ....|.++...++|.+.++ +..| |..+
T Consensus 533 ~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~ 607 (781)
T 3v9f_A 533 YEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCY 607 (781)
T ss_dssp TTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEE
T ss_pred CCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEE
Confidence 2221 1246889999999998777665444888887665332 1111 1346788998889986664 4555 7778
Q ss_pred EcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1006 EASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1006 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
+..++... .+....-++.. ....-++..++ + ..|..|+.+| +..++..
T Consensus 608 ~~~~~~~~-~~~~~dGl~~~----~f~~~~~~~~~-~-G~l~~g~~~G-l~~f~p~ 655 (781)
T 3v9f_A 608 ITSKKCFY-TYDHSNNIPQG----SFISGCVTKDH-N-GLIYFGSING-LCFFNPD 655 (781)
T ss_dssp ETTTTEEE-EECGGGTCCSS----CEEEEEEEECT-T-SCEEEEETTE-EEEECSC
T ss_pred ECCCCceE-EecccCCcccc----ccccCceEECC-C-CEEEEECCCc-eEEEChh
Confidence 88766543 33322222222 22223455665 3 4577788887 4556643
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=1.3e-13 Score=169.02 Aligned_cols=250 Identities=10% Similarity=-0.004 Sum_probs=172.4
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+|+..+..++|||||++++.+.+.+| +|++||+.+|+.+.. . + +...+..++||||
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspD 181 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHD 181 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTT
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeC
Confidence 45557889999999996444433333 899999999986642 0 1 1123667999999
Q ss_pred CCEEEEEeCCCE----------------EEEEEccCCCcccc-eEEEcccccceeEEEEecCCCcEEEEEEeC-----CC
Q 001363 408 GSLLGVAYSKHI----------------VQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DK 465 (1092)
Q Consensus 408 g~~las~~~d~~----------------i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~ 465 (1092)
|+.|+.++.++. |++|++.++..... ......|...+..++|||||++ |+.++. +.
T Consensus 182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVN 259 (710)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCC
T ss_pred CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCcc
Confidence 999999987765 99999988753211 1122235566889999999995 444332 57
Q ss_pred cEEEEECCC------Cc-eeEEEecCCcCeEEEeecccCCccEEEEEecC----CeEEEEEcCCCCc--eEEecCCC--C
Q 001363 466 TIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG--L 530 (1092)
Q Consensus 466 ~i~vwd~~~------~~-~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~--~~~~~~~~--~ 530 (1092)
.|.+||+.+ +. ....+..+...+... |++ +|..|+..+.. +.|.+||+.+... ...+..+. .
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD 336 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence 899999987 53 466676676666543 443 45555555443 3699999987652 23333333 3
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-e---CCCcEEEEE
Q 001363 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-G---DDHVIKIWD 606 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s---~dg~i~iwd 606 (1092)
.+..+++++++..+++... ++...|++|++.+|+.+..+..+. ..+..+.++|+++.++.. + ..++++.||
T Consensus 337 ~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred eEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 6778899877766666654 335678899987888777776654 778889999998777643 2 457899999
Q ss_pred CCCCc
Q 001363 607 MNKVQ 611 (1092)
Q Consensus 607 ~~~~~ 611 (1092)
+.+++
T Consensus 412 ~~tg~ 416 (710)
T 2xdw_A 412 LTKEE 416 (710)
T ss_dssp TTSSS
T ss_pred CCCCc
Confidence 98877
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=1.2e-12 Score=138.57 Aligned_cols=245 Identities=12% Similarity=0.104 Sum_probs=179.8
Q ss_pred EEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-CcEEEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001363 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1092)
Q Consensus 349 llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 427 (1092)
+|++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 789999999999999999998765 33344 4788999999999998 35677999999 7
Q ss_pred CCcccceEEEccc-ccceeEEEEecCCCcEEEEEEeC-CCcEEEEECCCCceeEEEecC------CcCeEEEeecccCCc
Q 001363 428 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENI 499 (1092)
Q Consensus 428 ~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~ 499 (1092)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+..+... ......+++ .++|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 76555 34443 34688999999999 7777776 778888884 78888777521 122333333 5578
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc--
Q 001363 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-- 577 (1092)
Q Consensus 500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-- 577 (1092)
.++++...++.|..||.+ ++.+..+.... ...++.+.++|+.++++.. .+.|..+|..+|+.+..+......
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 78777776643 4556788899999988764 457999999999999988754311
Q ss_pred -CCceEEEEEcCCCCEEEEEeCC--------CcEEEEEC-CCCceEEEEeCCCCCCCCceEE
Q 001363 578 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 578 -~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
...+..+...++++.+++.+.. +..+++.+ .+|+.+..+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 1237788889999888776421 13345555 4777777776665555555544
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=4e-13 Score=147.22 Aligned_cols=278 Identities=10% Similarity=-0.010 Sum_probs=190.7
Q ss_pred CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccce
Q 001363 355 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434 (1092)
Q Consensus 355 ~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~ 434 (1092)
.+++|.+||.++++........ . . -.........+++. +++..++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~----~------n---~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~-- 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYR----A------N---GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG-- 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHH----H------H---SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred CCceEEEEECCCCEEhhhhHhh----h------c---CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence 3789999999998765421000 0 0 00122446777774 45555556667899999999987665
Q ss_pred EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC-----cCeEEEeecccCCccEEEEEe-cC
Q 001363 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VD 508 (1092)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~~l~s~~-~d 508 (1092)
++. .......++++++++ ++++...++.|.+||..+++....+.... .....+++ . ++.++++.. .+
T Consensus 79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 333 335688999999985 66666578999999999999887776433 13455666 2 334444443 48
Q ss_pred CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC------ceeEEEEeCCCCeEEEEEeeccccCCceE
Q 001363 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVS 582 (1092)
Q Consensus 509 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 582 (1092)
+.|.++|..+.+....+... .....++++|+|++++++..+... .+.|.++|..+++....+.... .....
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~ 228 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPS 228 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCce
Confidence 99999999988776665543 345678999999977766432100 2679999999999887765432 23688
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEE----eCCCeEEEEECCCCcee
Q 001363 583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSV 657 (1092)
Q Consensus 583 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~----~~dg~i~iw~~~~~~~~ 657 (1092)
.++++|+++.++++.. .|.+||..+++................++++| ++.++++. ..++.|.+|+.. ++.+
T Consensus 229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 9999999999988765 89999999887632111111123467899999 55555555 568999999998 7776
Q ss_pred eecc
Q 001363 658 DAAG 661 (1092)
Q Consensus 658 ~~~~ 661 (1092)
..+.
T Consensus 306 ~~i~ 309 (328)
T 3dsm_A 306 DEFY 309 (328)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=2.4e-13 Score=165.95 Aligned_cols=246 Identities=11% Similarity=-0.017 Sum_probs=166.1
Q ss_pred CCCCcEEEEEECCCCCEEEEE-----eCCCEEEEEEccCCCcccceEEEcccccce--eEEEEecCCCcEEEEEEeCCCc
Q 001363 394 DPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNV--NDLAFSAPCKQISVITCGDDKT 466 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~-----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v--~~~~~s~d~~~l~l~s~~~d~~ 466 (1092)
+|...+..++|||||++||.+ +.+.+|++||+.+|+.+.. .+...+ ..++|+|||+ .|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----~~~~~~~~~~~~wspDg~--~l~~~~~d~~ 190 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----DVIEGGKYATPKWTPDSK--GFYYEWLPTD 190 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----CCBSCCTTCCCEECTTSS--EEEEEECCCC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----cccCcccccceEEecCCC--EEEEEEecCC
Confidence 566789999999999999954 3456899999999875511 122222 6899999999 6777777765
Q ss_pred -------------EEEEECCCCc----eeEEEecCCcCeEEEeecccCCccEEEEEecCC----eEEEEEcCCCCceEEe
Q 001363 467 -------------IKVWDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDY 525 (1092)
Q Consensus 467 -------------i~vwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~ 525 (1092)
|++|++.++. ++.....|...+..+.++ +||++|+.++.++ .|.+|+..+... ..+
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l 267 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS--RDGKYLFVYILRGWSENDVYWKRPGEKDF-RLL 267 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC--TTSCCEEEEEEETTTEEEEEEECTTCSSC-EEE
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC--CCCCEEEEEEeCCCCceEEEEEcCCCCce-EEe
Confidence 9999999886 333333455677788874 5777887777665 566665544433 333
Q ss_pred cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE---EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcE
Q 001363 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1092)
Q Consensus 526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 602 (1092)
..+...+....+ ++|. ++..+.....+..|++||+.++.. ...+..+. ...+..++++ ++..+++...|+..
T Consensus 268 ~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~ 342 (695)
T 2bkl_A 268 VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATS 342 (695)
T ss_dssp EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEE
T ss_pred ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEE
Confidence 334444455555 6777 665554333467899999987753 33333321 2457788888 66777888889988
Q ss_pred EEEECC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCc
Q 001363 603 KIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1092)
Q Consensus 603 ~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 655 (1092)
++|.+. +++....+..+. ...+..++++|+++.++.... .++|++||+.+++
T Consensus 343 ~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 343 EVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 888654 455555555432 234667788999987774433 4789999998775
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=4e-12 Score=140.13 Aligned_cols=246 Identities=8% Similarity=-0.028 Sum_probs=168.8
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
......+.++...+.+++|+|+|+ +++++..++.|.+||..+++.... ...+...+.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~ 93 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIK 93 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEE
T ss_pred cceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEE
Confidence 445566777777889999999998 788888889999999998875532 223567899999
Q ss_pred ECCCCCEEEEEeCC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC------CCcEEEEECC
Q 001363 404 WSPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAV 473 (1092)
Q Consensus 404 ~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~ 473 (1092)
|+|+|+++++...+ +.|.+||..++...... .-..+...+.+++++|+|+ ++++... .+.|..+|..
T Consensus 94 ~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~ 170 (333)
T 2dg1_A 94 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD 170 (333)
T ss_dssp ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT
T ss_pred ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCC
Confidence 99999988887666 68999999887533111 1012445789999999998 5665543 3556677766
Q ss_pred CCceeEEEecCCcCeEEEeecccCCccEE-EEEecCCeEEEEEcCCC-CceEE------ecCC-CCceEEEEEccCCCEE
Q 001363 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSL-GARVD------YDAP-GLGCTRMAYSANGRRL 544 (1092)
Q Consensus 474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~-~~~~~------~~~~-~~~i~~~~~s~dg~~l 544 (1092)
+++... +..+...+..+++++ ++..+ ++.+.++.|.+||+... ..... .... ...+..++++++|+..
T Consensus 171 ~~~~~~-~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~ 247 (333)
T 2dg1_A 171 FRTVTP-IIQNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY 247 (333)
T ss_dssp SCCEEE-EEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred CCEEEE-eecCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEE
Confidence 555433 323334567788854 66644 55566889999999642 22211 1111 1367889999999977
Q ss_pred EEEecCCCCceeEEEEeCCCCeEEEEEeeccc---cCCceEEEEEcCCCCEEEEEeCCC
Q 001363 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDH 600 (1092)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~dg 600 (1092)
++... ++.|.+||. +++.+..+..... +...+..++|+|+++.|++++.++
T Consensus 248 v~~~~----~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 248 VAMYG----QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEET----TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEcC----CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 76643 456999998 5666666654331 011578899999988887766554
No 192
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=1.8e-11 Score=132.52 Aligned_cols=285 Identities=11% Similarity=0.055 Sum_probs=195.0
Q ss_pred cccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001363 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 330 l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
+..+...+.+++++|+|+ +.++...++.|.+||.. ++.... . +..+...+.+++++++|+
T Consensus 10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGE 69 (299)
T ss_dssp CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCC
Confidence 445556899999999998 56665557899999988 553321 0 223457899999999999
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcCe
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV 488 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v 488 (1092)
++++...++.|..||.. ++ ... ..+......+..+++.++|. ++++...++.|.+||. +++.... ...+...+
T Consensus 70 l~v~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEEEETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEeCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 88887778889999986 33 221 12223455789999999998 6777777889999998 6554432 22344567
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1092)
..+++. +++.++++...++.|..||. +++.... .......+..++++++|+..++... .+.|..||. +++.
T Consensus 144 ~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 144 SFITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEI 215 (299)
T ss_dssp EEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCE
T ss_pred ceEEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcE
Confidence 888874 46677777777889999998 4443322 3333456889999999986665432 456999999 6664
Q ss_pred EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
.. +... .....+..++++++++..++...++.|..||. ++. +..+........+.++++ ++|++.++.. .+.+.
T Consensus 216 ~~-~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 216 TE-FKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG 289 (299)
T ss_dssp EE-EECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred EE-EECC-CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence 43 3221 12357889999999886666557789999998 454 334433333345788999 8887666654 56777
Q ss_pred EEECCCC
Q 001363 648 ILETPES 654 (1092)
Q Consensus 648 iw~~~~~ 654 (1092)
.++..++
T Consensus 290 ~~~~~~~ 296 (299)
T 2z2n_A 290 KLTLIKD 296 (299)
T ss_dssp EEEEC--
T ss_pred EEEcCcc
Confidence 7776543
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.56 E-value=7e-13 Score=143.98 Aligned_cols=288 Identities=14% Similarity=0.114 Sum_probs=194.5
Q ss_pred EEeecCCCceEEEEEcC----CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 339 SMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 339 ~v~~spdg~~llasg~~----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
.....||+++++++-.. ++.|.+.|..+++.+.... ....+ . +++||||++|+++
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-------------------vG~~P-~-va~spDG~~lyVa 95 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-------------------GGFLP-N-PVVADDGSFIAHA 95 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-------------------ECSSC-E-EEECTTSSCEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-------------------CCCCC-c-EEECCCCCEEEEE
Confidence 35667999876666554 6899999999998876421 12233 4 9999999999887
Q ss_pred e----------CCCEEEEEEccCCCcccceEEEcc--c---ccceeEEEEecCCCcEEEEEEe--CCCcEEEEECCCCce
Q 001363 415 Y----------SKHIVQLYAYHGGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSR 477 (1092)
Q Consensus 415 ~----------~d~~i~iwd~~~~~~~~~~~~~~~--h---~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~ 477 (1092)
+ .++.|.+||..+++.+..+. +.. + ...-..++|+|||++ ++.+. .++.|.++|+.+++.
T Consensus 96 n~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 96 STVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEE
T ss_pred cccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcE
Confidence 5 35789999999987665432 211 0 123557999999995 44443 378999999999999
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEec----CCCCce-EEEEEc-cCCCEEEEEecC
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYD----APGLGC-TRMAYS-ANGRRLFSCGTS 550 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~----~~~~~i-~~~~~s-~dg~~l~~~~~~ 550 (1092)
+.++..... ..+.|. ..+.+++.+.||.+.+.++.. ++...... ....++ ....|. ++|++++...
T Consensus 173 v~tI~v~g~----~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-- 245 (386)
T 3sjl_D 173 KRMLDVPDC----YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 245 (386)
T ss_dssp EEEEECCSE----EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred EEEEECCCc----ceeecC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--
Confidence 998854221 111222 235677888899999999876 33322111 111222 123554 6887666442
Q ss_pred CCCceeEEEEeCCCCe--EEEEEeec-------cccCCceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCc
Q 001363 551 KEGESFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQ 611 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~ 611 (1092)
.+.|++.|..++. ....+.-. .........++++++++.++.... .+.|.+.|+.+++
T Consensus 246 ---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 246 ---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp ---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred ---CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 4569999987664 33333200 000123345677999999988642 2579999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCceeeecccc
Q 001363 612 LLTTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGVL 663 (1092)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 663 (1092)
.+..+.... .+..+++++|++ +|++.. .++.|.++|..+++.+..+...
T Consensus 323 v~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 323 RLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred EEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 999987653 367999999997 666654 4899999999999888877643
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=1.4e-11 Score=136.50 Aligned_cols=203 Identities=10% Similarity=0.011 Sum_probs=141.4
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe
Q 001363 806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 881 (1092)
..++++|||++|++++ ++.|.++| .+++.+.. +.... ++.+.|.+.+.+++.+.||.+.+++. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4688999999998876 36799999 99998877 65322 24555645567777889999999999 8876633
Q ss_pred ec-----cccCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC----cCCCCCceEEEEccCCCEE
Q 001363 882 LE-----GHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRF 951 (1092)
Q Consensus 882 l~-----~h~~~V-~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~l~~s~dg~~l 951 (1092)
.. ....++ ....+++++..++..+..+.+.+.|+.+........+...... .........++++||++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 22 111222 3356777776665556788999999976542221222111100 0000124458899999988
Q ss_pred EEEe-----------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceEEee
Q 001363 952 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 952 a~~~-----------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
.+.. .+.|.++|..+++.+..+..+ ....+++|+|||+ .++++. .++.|.+||+.+++.+.++
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 7742 247999999999998886543 3688999999999 777776 4899999999999999774
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.55 E-value=4.6e-12 Score=137.55 Aligned_cols=204 Identities=13% Similarity=0.078 Sum_probs=142.7
Q ss_pred eeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceeeE
Q 001363 805 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS 880 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~ 880 (1092)
...++|+|||+++.++. ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 44688999999888775 4789999999999999886432 1 233433 566777888899999999876 55432
Q ss_pred eeccc----cCCeE-EEEEc-CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCcCCCCCceEEEEccCC
Q 001363 881 KLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 881 ~l~~h----~~~V~-~l~~s-pdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~s~dg 948 (1092)
....+ ..++. ..+|. ++|++++ .+.+|.|.+.|+.++.......+... .+... +....+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence 22111 12222 24664 6775554 66789999999987653222222210 11111 235568889999
Q ss_pred CEEEEEe-----------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceEEe
Q 001363 949 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus 949 ~~la~~~-----------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~ 1015 (1092)
+.+.+.. .+.|.++|+.+++.+..+..++ .+.+++|++||+ +|+++. .++.|.++|..+++.+.+
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9988842 1469999999999999877653 688999999997 666654 589999999999999988
Q ss_pred ec
Q 001363 1016 IL 1017 (1092)
Q Consensus 1016 ~~ 1017 (1092)
+.
T Consensus 370 i~ 371 (386)
T 3sjl_D 370 VN 371 (386)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=1.5e-11 Score=136.32 Aligned_cols=281 Identities=12% Similarity=0.011 Sum_probs=186.3
Q ss_pred eecCCCceEEEEEc-CCC---cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-
Q 001363 341 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1092)
Q Consensus 341 ~~spdg~~llasg~-~dg---~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~- 415 (1092)
...|++++++++-. ... +|.++|..+++.+.. +.....+ .++|||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 44578875444432 223 889999999887643 2222233 899999999999986
Q ss_pred ---------CCCEEEEEEccCCCcccceEEEc--cc---ccceeEEEEecCCCcEEEEEEe--CCCcEEEEECCCCceeE
Q 001363 416 ---------SKHIVQLYAYHGGSDARQQLEID--AH---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 416 ---------~d~~i~iwd~~~~~~~~~~~~~~--~h---~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~ 479 (1092)
.++.|.+||..+.+.+.... +. .+ ...-..++|+|||++ |+.+. .++.|.++| ++++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~--l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNAD--LLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCCE--EEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999999876555331 11 00 123457899999994 55544 257899999 9999887
Q ss_pred E-EecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-----CCCCc-eEEEEEccCCCEEEEEecCCC
Q 001363 480 S-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKE 552 (1092)
Q Consensus 480 ~-~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~-i~~~~~s~dg~~l~~~~~~~~ 552 (1092)
. +... .. +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 162 ~~i~~~-~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSSP-TC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCCC-ce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 5432 21 23333332 45677888999999999 665542221 11112 233456777665554443
Q ss_pred CceeEEEEeCCCCe--EEEEEeecc-------ccCCceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceE
Q 001363 553 GESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLL 613 (1092)
Q Consensus 553 ~~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~ 613 (1092)
.+.+.+.|..++. .+..+.... ........+.++|+++.++++.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 3468889987553 222222100 00123445789999998888653 357999999999999
Q ss_pred EEEeCCCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCceeee
Q 001363 614 TTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA 659 (1092)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~ 659 (1092)
..+.... ....++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 9987553 368999999999 677776 489999999999988766
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=1.4e-12 Score=141.00 Aligned_cols=238 Identities=11% Similarity=0.056 Sum_probs=168.9
Q ss_pred ecCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 470 (1092)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++++++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445667788999999998 7777888899999999886 33 4556777899999999998 67777777899999
Q ss_pred ECCCCceeEEEecC----CcCeEEEeecccCCccEEEEEec-----------------CCeEEEEEcCCCCceEEecCCC
Q 001363 471 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG 529 (1092)
Q Consensus 471 d~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~~~ 529 (1092)
|..+++........ ...+..+++. ++|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 99888765443221 1235567774 47778887331 2344444443 4444444555
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeE---EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001363 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1092)
Q Consensus 530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 605 (1092)
.....++|+|||+.+++... ++.|++|++. +++. ...+.. ....+..++++++|+..++. ++.|.+|
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 56789999999999844432 5679999986 5554 333311 23567789999999866555 7889999
Q ss_pred ECCCCceEEEEeCCCCCCCCceEEE-ccCCCEEEEEeCCCeEEEEECCCC
Q 001363 606 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES 654 (1092)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~ 654 (1092)
|.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 986 777777775543 788999 5899999998876 4444555544
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=1.8e-12 Score=141.96 Aligned_cols=272 Identities=8% Similarity=0.032 Sum_probs=183.6
Q ss_pred cccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccC
Q 001363 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 785 (1092)
Q Consensus 706 ~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1092)
.++++.++|..+.+....................+++. +++.+++...++.+.+||..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~--------------------- 72 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN--------------------- 72 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT---------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc---------------------
Confidence 36778888876543322111000001122345667764 45555566667888887654
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEcCCceeeEEecCCC-----CCeEEEEEcCCCCCEE
Q 001363 786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVI 859 (1092)
Q Consensus 786 ~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~l 859 (1092)
+++.+.... .......++++++++++++. .++.|.+||..+++....+.... .....+++ . +++++
T Consensus 73 -t~~~~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 73 -TFKEVGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp -TCCEEEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred -ccEEEEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence 333233321 23567899999999655555 37999999999999887765432 14556777 3 56555
Q ss_pred EEEe-CCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC----------CcEEEEEcCCCceeeeeeeec
Q 001363 860 AIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQT 928 (1092)
Q Consensus 860 asg~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D----------g~I~iwd~~~~~~~~~~~~~~ 928 (1092)
++.. .++.|.++|..+++.+..+... .....++++|+|++++++..+ +.|.++|..+++... .+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence 5554 4889999999999988877643 345789999999988877654 789999998876433 2222
Q ss_pred CCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeee-eccCCCCCEEEEEEec-CCCEEEEE----ECCCcE
Q 001363 929 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSC-DCRMVFTS----FVDGTL 1002 (1092)
Q Consensus 929 ~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~-~~~~h~~~v~~l~fs~-dg~~l~t~----~~Dg~i 1002 (1092)
..+ .....++|+||+++|.++.. .|.+||..+++.... +...+......++++| ++..+++. ..+++|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 222 14789999999999988655 999999998876432 2222246789999999 55555555 568899
Q ss_pred EEEEcCCCceEEeec
Q 001363 1003 SIHEASNLEVQCRIL 1017 (1092)
Q Consensus 1003 ~vwd~~~~~~~~~~~ 1017 (1092)
.+||.. |+.+.++.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 98888776
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.53 E-value=7.2e-11 Score=127.66 Aligned_cols=237 Identities=11% Similarity=-0.011 Sum_probs=163.2
Q ss_pred ccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001363 735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
..+..+++.++|..+++...++.+..|+... . .....++ .....+..++++++|
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----------------------~-~~~~~~~--~~~~~~~~i~~~~~g 110 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKKG-----------------------I-IKEYTLP--NPDSAPYGITEGPNG 110 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTS-----------------------C-EEEEECS--STTCCEEEEEECTTS
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCCC-----------------------c-EEEEeCC--CcCCCceeeEECCCC
Confidence 3467788889998777766677777766321 1 1111111 134567899999999
Q ss_pred CEEEEEe-CCeEEEEEcCCceeeEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe-eccccCCeEE
Q 001363 815 AYLFSAS-GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTG 891 (1092)
Q Consensus 815 ~~l~~~s-dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~ 891 (1092)
+++++.. ++.|.+||. +++.... .......+..+++++ +++++++...++.|..||. +++.... +..+...+.+
T Consensus 111 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 187 (299)
T 2z2n_A 111 DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVG 187 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCccee
Confidence 8888765 588999998 5544332 233456789999999 7888877777889999999 6665432 3345567889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCceee
Q 001363 892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCL 970 (1092)
Q Consensus 892 l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~ 970 (1092)
+++.++|+++++...++.|.+|+. +++... ..... .. ..+.+++++++|++.++. .++.|..||. +++..
T Consensus 188 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~-~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 258 (299)
T 2z2n_A 188 ITKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIPT-PN---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE 258 (299)
T ss_dssp EEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECSS-TT---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE
T ss_pred EEECCCCCEEEEccCCceEEEECC-CCcEEE---EECCC-CC---CCceeEEECCCCCEEEeccCCceEEEECC-CCceE
Confidence 999999998887777888999999 554322 21111 11 258899999999977775 5688999998 45433
Q ss_pred eeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001363 971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
......+...+.++++ ++|+++++.+ .+.+..++..+++
T Consensus 259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 2223345678999999 9998777654 5677778877654
No 200
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=1.3e-08 Score=125.79 Aligned_cols=536 Identities=11% Similarity=0.038 Sum_probs=309.2
Q ss_pred CCceEEeecCCCc-eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC--CCCEE
Q 001363 335 SSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLL 411 (1092)
Q Consensus 335 ~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~l 411 (1092)
..|.++...++|. .+ .|+.++.+..||..+++.... .. ... .. ..-....|.++...+ +|.+.
T Consensus 66 n~I~~i~~d~~g~~lW--igt~~~Gl~~~d~~~~~f~~~-~~---~~~------~~--~~l~~~~i~~i~~d~~~~g~lw 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIW--IATQRAGLNAYNYETQSFSVY-QY---NPE------DP--QSLITNDVTHITSSVQAGKGLW 131 (781)
T ss_dssp SCEEEEEECSSSSEEE--EEESSSCEEEEETTTTEEEEE-CC---CTT------CS--SSCSCSCEEEEEECSSTTSEEE
T ss_pred cccceEEEcCCCCEEE--EEeCCCCcceECCCCCeEEee-cc---ccC------CC--CCcccCcceEEEecCccCCCEE
Confidence 3699999999997 43 355555799999887653321 00 000 00 000124688998887 66554
Q ss_pred EEEeCCCEEEEEEccCCCcccceEEEcc------cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe---
Q 001363 412 GVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--- 482 (1092)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~--- 482 (1092)
.++.++-+..||..+++.. .+.. ....|.++...++|. +..++.++-|..||..+++...-..
T Consensus 132 -i~t~~~gl~~~~~~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~ 203 (781)
T 3v9f_A 132 -VCTYYRGIEYLDIATGKFT----HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQ 203 (781)
T ss_dssp -EEESSSCEEEEETTTTEEE----EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC---
T ss_pred -EEECCCCeeEEECCCCeEE----eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCC
Confidence 4553334888998765321 1211 124588888888876 4446666568999988775432111
Q ss_pred ----cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEecCC
Q 001363 483 ----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 483 ----~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
.....|.++.. +.++.+. .|+.+ -+.+||..+....... ......|.++...++|...+....
T Consensus 204 ~~~~l~~~~i~~i~~--d~~g~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-- 277 (781)
T 3v9f_A 204 NPNSLPGNDVRCIYK--DTNGNIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATEL-- 277 (781)
T ss_dssp -----CCSSEEEEEE--CTTCCEE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESS--
T ss_pred CcccCCCCceeEEEE--cCCCCEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCC--
Confidence 11345777765 3455444 45555 5788887654332211 112346889988888876654321
Q ss_pred CCceeEEEEeCCCCeEEEEEe-----------eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe---
Q 001363 552 EGESFLVEWNESEGAIKRTYQ-----------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--- 617 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~--- 617 (1092)
+-|.++|..++....... ........|.++...++|. +-.|+.++-|..++..++.......
T Consensus 278 ---~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~ 353 (781)
T 3v9f_A 278 ---NGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPT 353 (781)
T ss_dssp ---SCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----
T ss_pred ---CCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcc
Confidence 228889988765433221 1112246789999888875 6667777778999987655433211
Q ss_pred ----CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCC
Q 001363 618 ----AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 693 (1092)
Q Consensus 618 ----~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1092)
..-....|.+++..++|. |.+|+.++-|..|+..++... .+..
T Consensus 354 ~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~------------------------------- 400 (781)
T 3v9f_A 354 QMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI-YNKE------------------------------- 400 (781)
T ss_dssp CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE-CC---------------------------------
T ss_pred ccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE-EccC-------------------------------
Confidence 011123477788777776 556676666888876533111 0000
Q ss_pred CCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcc
Q 001363 694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 773 (1092)
Q Consensus 694 ~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~ 773 (1092)
+.......|.++...++|...+ ++.++-+..++....
T Consensus 401 -----------------------------------~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~------- 437 (781)
T 3v9f_A 401 -----------------------------------NRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK------- 437 (781)
T ss_dssp --------------------------------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC-------
T ss_pred -----------------------------------CCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC-------
Confidence 0000234577888877887444 554444555543221
Q ss_pred cccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC-----CCCeEE
Q 001363 774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATS 848 (1092)
Q Consensus 774 ~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~-----~~~i~~ 848 (1092)
. ....... ......|.++...++|.+.+... +.+..+|..+++........ ...|.+
T Consensus 438 ---------------~-~~~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (781)
T 3v9f_A 438 ---------------K-FQIIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRS 499 (781)
T ss_dssp ---------------E-EEECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred ---------------c-EEEeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEE
Confidence 1 1111000 01346788999888887666554 67899998876554333222 357899
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc---ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001363 849 LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS 925 (1092)
Q Consensus 849 l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 925 (1092)
++..+ ++.+.+ |+.++-+..||..+++...-... ....|.++...++|.+.++. .+|.|..||..+++...
T Consensus 500 i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~~--- 573 (781)
T 3v9f_A 500 IAQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQV--- 573 (781)
T ss_dssp EEECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCEE---
T ss_pred EEEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEEE---
Confidence 99988 676555 56544488898877653322111 24578999999898876654 47754888887755322
Q ss_pred eecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeecc--C---CCCCEEEEEEecCCCEEEEEECCC
Q 001363 926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--I---SSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~--~---h~~~v~~l~fs~dg~~l~t~~~Dg 1000 (1092)
.....+-. ...|.++...++|.+.+++.+ .|..++..+++... +.. + ..-...++...+||++++ |+.+|
T Consensus 574 ~~~~~gl~--~~~i~~i~~d~~g~lW~~t~~-Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G 648 (781)
T 3v9f_A 574 FQRKEGLP--NTHIRAISEDKNGNIWASTNT-GISCYITSKKCFYT-YDHSNNIPQGSFISGCVTKDHNGLIYF-GSING 648 (781)
T ss_dssp ECGGGTCS--CCCCCEEEECSSSCEEEECSS-CEEEEETTTTEEEE-ECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE
T ss_pred ccccCCCC--CceEEEEEECCCCCEEEEcCC-ceEEEECCCCceEE-ecccCCccccccccCceEECCCCEEEE-ECCCc
Confidence 22222221 135789999999988777644 47778877654332 111 1 111234677788887665 66777
Q ss_pred cEEEEEcC
Q 001363 1001 TLSIHEAS 1008 (1092)
Q Consensus 1001 ~i~vwd~~ 1008 (1092)
+..++..
T Consensus 649 -l~~f~p~ 655 (781)
T 3v9f_A 649 -LCFFNPD 655 (781)
T ss_dssp -EEEECSC
T ss_pred -eEEEChh
Confidence 5556654
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.53 E-value=2.2e-12 Score=136.59 Aligned_cols=246 Identities=9% Similarity=0.000 Sum_probs=175.2
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecccc-CCe
Q 001363 813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRV 889 (1092)
Q Consensus 813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V 889 (1092)
.+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++++ +.++.|..||. +|+.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456777776 6999999999999999998766 4789999999 888888 45788999999 899999988653 578
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecC-CCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCC
Q 001363 890 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 966 (1092)
Q Consensus 890 ~~l~~spdg~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~ 966 (1092)
.++.+.+||+++++.+. ++.|..+|.+ ++......+... .+.. .....+++.++|+++++. .++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 89999999999999887 7777777763 443322222111 1111 135567889999999985 67899999998
Q ss_pred ceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEE
Q 001363 967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1046 (1092)
Q Consensus 967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1046 (1092)
|+.+.++.. ...+.++.+.++|..+++++.+++|..+|..+|+.+.++..... +.. .-..+..++..+ ++..+
T Consensus 155 G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~---~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-EGV---QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-BSC---CCSEEEEEEECT-TSCEE
T ss_pred CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-CCc---cccccccceEcC-CCCEE
Confidence 888877543 24566788899999999998888999999999999988863221 110 112345566676 46766
Q ss_pred EEEeCC--------CcEEEEecC-CCCCccccCCCCC
Q 001363 1047 AVGLTN--------GEVYVIEPN-EPGDTWAVLPPDE 1074 (1092)
Q Consensus 1047 ~~~~~d--------g~v~~w~~~-~~~~~~~~~~~~~ 1074 (1092)
++.+.. +..+++++. +.+-.|......+
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~ 264 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVK 264 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTT
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCccc
Confidence 666421 233566663 3333465444333
No 202
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.51 E-value=4.1e-13 Score=163.88 Aligned_cols=250 Identities=9% Similarity=-0.072 Sum_probs=163.3
Q ss_pred cCCCCceEEeecCCCceEEEEE----cCCCcEEEEecCCCCee-EEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg----~~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
+|+..+..++|||||++++.+. +.+.+|++||+.+|+.+ .. . +.+. ....++|||
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp 177 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP 177 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence 5666799999999999644443 33467999999999865 21 0 1111 125789999
Q ss_pred CCCEEEEEeCCCE-------------EEEEEccCCCccc-ceEEEcccccceeEEEEecCCCcEEEEEEeCCC----cEE
Q 001363 407 DGSLLGVAYSKHI-------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK 468 (1092)
Q Consensus 407 dg~~las~~~d~~-------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~----~i~ 468 (1092)
||+.|++++.+.. |++|++.++.... .......|...+..+.|||||++ |+.++.++ .|.
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY 255 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence 9999999988765 9999999875321 12122345567889999999995 44444344 677
Q ss_pred EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCC-CCceEEEEEccCC
Q 001363 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG 541 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~-~~~i~~~~~s~dg 541 (1092)
+||..+++ ...+..+...+....+ + ++.+++... .++.|.+||+.+... ...+... ...+..++++ ++
T Consensus 256 ~~~~~~~~-~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~ 330 (695)
T 2bkl_A 256 WKRPGEKD-FRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG 330 (695)
T ss_dssp EECTTCSS-CEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred EEcCCCCc-eEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence 77765554 4455556555555554 2 344444444 257899999987653 3333333 4467788887 66
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCceE
Q 001363 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQLL 613 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~~ 613 (1092)
..+++... ++...|++++.. ++....+..+. ...+..+.++|+++.++... ..++|++||+.+++..
T Consensus 331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 66666554 234456666654 55555555442 25677788899988776432 3478999999988743
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.49 E-value=2.8e-12 Score=136.50 Aligned_cols=241 Identities=8% Similarity=-0.046 Sum_probs=166.6
Q ss_pred CceEEeecCCCceEEE-EEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 336 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~lla-sg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
...+++++|+|+ +++ +...++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 778999999998 666 556778999999766543211 11233567889999999966665
Q ss_pred eCCCEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
. ++.|.+||..++... .+. .....+..++++++|+ ++++...++.|.+|+..+.............+..+++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765422 122 2235688999999998 7777777889999986655443322233345677887
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee
Q 001363 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1092)
.+ ++.++++...++.|.+||................+..++++++|..+++... ++.|.+|+..+.........
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence 54 6677777777899999998766544333333356889999999966665532 45699999876544332211
Q ss_pred ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001363 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 574 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1092)
. ...+..++++++++.+++...++.|++++....+.
T Consensus 232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 1 25689999999999888888899999999876543
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=2e-12 Score=158.95 Aligned_cols=247 Identities=9% Similarity=0.050 Sum_probs=164.0
Q ss_pred CCCCcEEEEEECCCCCEEEEEeCC-----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCc--
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~-- 466 (1092)
+|...+..++|||||++||.++.+ ..|++||+.+|+.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 344578899999999999988654 4699999999875431 112223468899999 8 4555555443
Q ss_pred ------------EEEEECCCCce--eEEEec--CCcCeEEEeecccCCccEEEEEecCC-----eEEEEEcCCC--CceE
Q 001363 467 ------------IKVWDAVTGSR--TYSFEG--HGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV 523 (1092)
Q Consensus 467 ------------i~vwd~~~~~~--~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~--~~~~ 523 (1092)
|++|++.++.. ...+.. +...+..+.| ++||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 89999988763 223332 3335777777 55788888777554 7999999876 3133
Q ss_pred EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001363 524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1092)
Q Consensus 524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 601 (1092)
.+..+...+... ++|+|+.|+..+..+..+..|++||+.++ +....+..+. ..+..+.+. ++..+++...|+.
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence 343343344444 35999999888765444678999999885 3333443333 456677777 5566777888888
Q ss_pred EEEEECC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCc
Q 001363 602 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1092)
Q Consensus 602 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 655 (1092)
.++|.+. ++.....+..+. ...+..++++|+++.++.... .+++++||+.+++
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7777554 456666665432 234678889999886664332 4789999998775
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.47 E-value=1.9e-10 Score=124.35 Aligned_cols=281 Identities=10% Similarity=0.025 Sum_probs=191.4
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
......+.+++++++|+ +.++...++.|.+||.. ++.... . +..+...+..+++.++|++
T Consensus 16 ~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l 75 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF-E-----------------VPTPDAKVMCLIVSSLGDI 75 (300)
T ss_dssp SSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE-E-----------------CSSTTCCEEEEEECTTSCE
T ss_pred CCCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE-E-----------------CCCCCCcceeEEECCCCCE
Confidence 33445889999999998 66666677899999987 554321 1 2234467999999999998
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE-EEecCCcCeE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVY 489 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~ 489 (1092)
.++...++.|..||.. ++. . ...+......+.++++.++|+ ++++...++.|..||.. ++... .+......+.
T Consensus 76 ~v~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 76 WFTENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp EEEETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred EEEecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 8877778889999988 543 2 112333346789999999998 67777668899999987 65542 2232345677
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001363 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
.+++. +++.+.++...++.|..++. .++... ........+..+++.++|+..++... .+.|..||. +++..
T Consensus 150 ~i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~ 221 (300)
T 2qc5_A 150 FITLG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEIS 221 (300)
T ss_dssp EEEEC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEE
T ss_pred eEEEC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEE
Confidence 88874 46677776666888999988 333322 22233456889999999986665432 456999998 55544
Q ss_pred EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001363 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
...... ....+.+++++++++..++...++.|..|+. ++... .+........+.+++++++|++.++.. . .|..
T Consensus 222 ~~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~ 295 (300)
T 2qc5_A 222 EYDIPT--PNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGK 295 (300)
T ss_dssp EEECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEE
T ss_pred EEECCC--CCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEE
Confidence 321111 1356889999999986666656789999998 45443 333332334578999999998665544 4 6666
Q ss_pred EEC
Q 001363 649 LET 651 (1092)
Q Consensus 649 w~~ 651 (1092)
++.
T Consensus 296 ~~p 298 (300)
T 2qc5_A 296 LNL 298 (300)
T ss_dssp EEE
T ss_pred eCC
Confidence 664
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.47 E-value=2.3e-11 Score=134.90 Aligned_cols=205 Identities=14% Similarity=0.086 Sum_probs=143.4
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe-
Q 001363 806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK- 881 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~- 881 (1092)
..++|+|||+++.++. ++.|.+.|+.+++.+.++..... ....|++.+.+++.+.||.+.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4568899999888875 36899999999999888764321 333442446667777888888888866655432
Q ss_pred ---eccccCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc-C---CCCCceEEEEccCCCEEEE
Q 001363 882 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM-T---LAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 882 ---l~~h~~~V-~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~v~~l~~s~dg~~la~ 953 (1092)
+.....++ ..+.|+++++.++..+..+.|.+.|+.+........+....... . .......++++||++.+.+
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22122222 23578999998888888899999999765432211211110000 0 0012334799999998777
Q ss_pred Ee-----------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceEEee
Q 001363 954 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 954 ~~-----------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
.. .+.|.++|..+.+.+..+..+ ....++.|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 42 247999999999999887544 3588999999999 888887 5899999999999999887
No 207
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.47 E-value=8e-12 Score=132.99 Aligned_cols=240 Identities=10% Similarity=-0.057 Sum_probs=166.5
Q ss_pred cEEEEEECCCCCEEE-EEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001363 398 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1092)
Q Consensus 398 ~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 476 (1092)
...+++++++|++++ +.+.++.|.+||..++.... ....+...+.+++++++|+ ++++.. ++.|.+||..++.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 788999999999777 44678899999987653211 1122335688999999998 566655 8899999977654
Q ss_pred eeEEEe-cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001363 477 RTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 477 ~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
. ..+. .....+..+++.+ ++.++++...++.|.+|+..+.............+..++++++|+.+++... .+
T Consensus 99 ~-~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~ 171 (270)
T 1rwi_B 99 Q-TVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 171 (270)
T ss_dssp C-EECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GT
T ss_pred E-eeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CC
Confidence 3 3332 2335678888854 6677777778899999976554443322223345778999999986665532 45
Q ss_pred eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC
Q 001363 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1092)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1092)
.|.+||..++.......... ..+..+++++++..+++...++.|.+|+..+..... ... .+...+..++++++|+
T Consensus 172 ~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 172 RVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRT 246 (270)
T ss_dssp EEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCC
T ss_pred EEEEEecCCCceEeecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCC
Confidence 79999988776543322222 568899999999766777678899999987655433 221 2224578999999999
Q ss_pred EEEEEeCCCeEEEEECCCCc
Q 001363 636 LLAVIANENRIKILETPESN 655 (1092)
Q Consensus 636 ~l~~~~~dg~i~iw~~~~~~ 655 (1092)
++++...++.|++++....+
T Consensus 247 l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 247 VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEGGGTEEEEECCCGGG
T ss_pred EEEEECCCCEEEEEcCCCcc
Confidence 88888889999999987553
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.46 E-value=1.1e-11 Score=137.35 Aligned_cols=281 Identities=11% Similarity=0.093 Sum_probs=191.7
Q ss_pred CCCceEEEEEcCC----CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe----
Q 001363 344 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---- 415 (1092)
Q Consensus 344 pdg~~llasg~~d----g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~---- 415 (1092)
|++++++++...+ ++|.+.|..+++.+..... -..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-------------------G~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-------------------GFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-------------------CSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-------------------CCCC--ceEECCCCCEEEEEecccc
Confidence 5666666665544 7999999999988865221 2234 799999999998886
Q ss_pred ------CCCEEEEEEccCCCcccceEEEc--c---cccceeEEEEecCCCcEEEEEEe--CCCcEEEEECCCCceeEEEe
Q 001363 416 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 416 ------~d~~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~~~~ 482 (1092)
.++.|.++|..+++.+..+. +. . .......++|+|||++ ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987665432 22 0 0123457899999994 55444 36889999999999998886
Q ss_pred cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE----ecCCCCc-eEEEEEccCCCEEEEEecCCCCceeE
Q 001363 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
.... ....+... ..+++.+.||.+.+.+....+.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 4221 12222222 5667778888888888854443321 1111222 123567899988777654 4569
Q ss_pred EEEeCCCCeEE--EEEeec-----c--ccCCceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceEEEEeC
Q 001363 558 VEWNESEGAIK--RTYQGL-----Q--LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 558 ~iwd~~~~~~~--~~~~~~-----~--~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~ 618 (1092)
++.|..++... ..+... . ........++++|+++++++... .+.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998665432 111110 0 00011223689999998887642 35799999999999999875
Q ss_pred CCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCceeeec
Q 001363 619 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA 660 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~ 660 (1092)
.. ....++|+|||+ ++++.. .++.|.++|..+.+.+..+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 53 257899999999 888887 5899999999999888765
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=9.8e-12 Score=152.81 Aligned_cols=249 Identities=11% Similarity=0.009 Sum_probs=158.2
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+|...+..++|||||++++.+.+.+| +|++||+.+|+.+.. . + +...+..++||||
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-----------------~--~~~~~~~~~wspD 219 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-----------------L--KWVKFSGLAWLGN 219 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-----------------E--EEEESCCCEESTT
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-----------------C--CCceeccEEEECC
Confidence 34447889999999996544443333 599999999987642 0 0 1122356899999
Q ss_pred CCEEEEEeCCCE--------------EEEEEccCCCcccc-eEEEcccccceeEEEEecCCCcEEEEEEeC-----CCcE
Q 001363 408 GSLLGVAYSKHI--------------VQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTI 467 (1092)
Q Consensus 408 g~~las~~~d~~--------------i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~~i 467 (1092)
+.|+.++.++. |++|++.++..... ......+...+..+.|||||++ |+..+. ...|
T Consensus 220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l 296 (741)
T 1yr2_A 220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTV 296 (741)
T ss_dssp -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEE
T ss_pred -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceE
Confidence 99998876543 88999987653211 1112233345889999999994 444443 3489
Q ss_pred EEEECCCC--ceeEEEecCCcCeEEEeecccCCccEEEEEec----CCeEEEEEcCCCC-c-eEEecCCCCceEEEEEcc
Q 001363 468 KVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-A-RVDYDAPGLGCTRMAYSA 539 (1092)
Q Consensus 468 ~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~-~-~~~~~~~~~~i~~~~~s~ 539 (1092)
++||+.++ ++...+..+...+....+ +++..|+..+. ++.|.+||+.+.. . ...+..+...+..++++
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~- 372 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA- 372 (741)
T ss_dssp EEEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-
T ss_pred EEEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-
Confidence 99999887 425566556555544432 35567776665 3459999988742 2 33334444456667776
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCce
Q 001363 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 612 (1092)
Q Consensus 540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 612 (1092)
++..+++... ++...|++++.. +...+.+..+. ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 373 ~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4455555544 335556677764 55555555432 35788899999987666432 447899999988873
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.38 E-value=1.3e-10 Score=126.74 Aligned_cols=250 Identities=13% Similarity=0.098 Sum_probs=164.9
Q ss_pred ccCCCCceEEeecCCCceEEEE-------EcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llas-------g~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
.+.-....+++|+++|+ ++++ +..++.|.+||..+++.... .. ....++...+..++
T Consensus 14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~--------------~~~~~~~~~~~~i~ 77 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK--------------PEVNGYGGIPAGCQ 77 (314)
T ss_dssp ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE-EC--------------CEETTEECCEEEEE
T ss_pred hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee--------------cccCCCCCCCceEE
Confidence 44444788999999997 6666 56678999999888875421 00 00122446789999
Q ss_pred ECCC-CCEEEEEeCCCEEEEEEccCCCcccc-eEEEcc-cccceeEEEEecCCCcEEEEEEeCC---------------C
Q 001363 404 WSPD-GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD---------------K 465 (1092)
Q Consensus 404 ~spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d---------------~ 465 (1092)
++++ |+++++.. .+.|.+||.. ++.... .....+ ....+.++++.++|+ ++++...+ +
T Consensus 78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence 9999 76555544 4469999988 653211 000011 224588999999998 56665544 5
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeec--ccCCccEE-EEEecCCeEEEEEcC-CCC-----ceEEecCCC-CceEEE
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFI-FSISVDGKIKAWLYD-SLG-----ARVDYDAPG-LGCTRM 535 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~~l-~s~~~dg~i~vwd~~-~~~-----~~~~~~~~~-~~i~~~ 535 (1092)
.|..||.. ++..... .+......++++ .+++++.+ ++...++.|.+|+++ .+. ....+..+. .....+
T Consensus 154 ~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred eEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 67777765 5543332 333445677775 11566555 444568899999986 222 112223232 567889
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 001363 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 609 (1092)
Q Consensus 536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~ 609 (1092)
+++++|+..++... ++.|.+||..+++.+..+..+. ..+.+++++|+++.|+++ ..++.|..|++..
T Consensus 232 ~~d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 232 DFDEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999988777643 4569999998787777666544 678999999999966555 4567899998764
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.37 E-value=1.8e-09 Score=116.65 Aligned_cols=243 Identities=12% Similarity=0.027 Sum_probs=168.7
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001363 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1092)
Q Consensus 392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 471 (1092)
+......+.++++.++|+..++...++.|.+||.. ++... ..+..+...+.++++.++|. ++++...++.|..||
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLS 89 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEEC
Confidence 33456788999999999988877778899999988 54221 12333446789999999998 667666678899999
Q ss_pred CCCCceeE-EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-EEecCCCCceEEEEEccCCCEEEEEec
Q 001363 472 AVTGSRTY-SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 472 ~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
.. ++... .+......+..+++. +++.++++...++.|..+|.. ++.. .........+..+++.++|+..++...
T Consensus 90 ~~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 165 (300)
T 2qc5_A 90 KK-GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ 165 (300)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred CC-CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC
Confidence 87 65432 222234567888875 466777777778899999887 3333 223334457889999999996555432
Q ss_pred CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
.+.|..+|. +++... +.... ....+..+++.+++...++....+.|.+|+. +++.... ........+.+++
T Consensus 166 ----~~~i~~~~~-~g~~~~-~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~ 236 (300)
T 2qc5_A 166 ----NNSIGRITN-TGKLEE-YPLPT-NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAIT 236 (300)
T ss_dssp ----TTEEEEECT-TCCEEE-EECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEE
T ss_pred ----CCeEEEECC-CCcEEE-eeCCC-CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEE
Confidence 456999998 565543 32211 1256889999999876666666778999998 5554433 2222234578899
Q ss_pred EccCCCEEEEEeCCCeEEEEECC
Q 001363 630 FNKNGTLLAVIANENRIKILETP 652 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iw~~~ 652 (1092)
++++|++.++...++.|..|+..
T Consensus 237 ~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 237 AGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ECSTTCEEEEETTTTEEEEECTT
T ss_pred ECCCCCEEEeccCCCeEEEECCC
Confidence 99999877666667899999983
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.36 E-value=3.8e-10 Score=127.00 Aligned_cols=242 Identities=12% Similarity=0.012 Sum_probs=164.0
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
...+.++|+|+|+ |+++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999998 788888789999999988765532 112 22333 9999999999998
Q ss_pred eCCC--EEEEEEccCCCcccceEEEcc-cccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE----EecCCcC
Q 001363 415 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP 487 (1092)
Q Consensus 415 ~~d~--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~----~~~~~~~ 487 (1092)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 7765 799999887654332111112 4456889999995552 44466788999999987764322 2222222
Q ss_pred e--EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC---------------CCceEEEEEccCCCEEEEEecC
Q 001363 488 V--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---------------GLGCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 488 v--~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---------------~~~i~~~~~s~dg~~l~~~~~~ 550 (1092)
- ..++|++. ++.++++...++.|+.|+.+.. ...+.+. -.....++++++|+.+++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 27888653 3567777778899999987654 2222221 12478899999999655543
Q ss_pred CCCceeEEEEeCCCCeEEEEEeecc------------ccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
.+++.|+.|+..++.. ..+.++. ........+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0266799999877764 4444431 00245889999999877777777888887765
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=2e-10 Score=125.22 Aligned_cols=245 Identities=9% Similarity=0.064 Sum_probs=163.6
Q ss_pred cEEEEEEecCCcEEEE-------eecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCC-CCCCCCCeeE
Q 001363 736 KISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT-DSNSQEAVPC 807 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l~~-------~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~-~~~~~~~v~~ 807 (1092)
...+++|+++|..+++ ...++.|.+|+.... ... ....+ ..++...+.+
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----------------------~~~-~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG----------------------KKT-VICKPEVNGYGGIPAG 75 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC----------------------CEE-EEECCEETTEECCEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC----------------------cEE-EEEecccCCCCCCCce
Confidence 4568899999987777 466777887764332 211 11000 0013356889
Q ss_pred EEEecC-CCEEEEEeCCeEEEEEcCCceeeEE-ecC----CCCCeEEEEEcCCCCCEEEEEeCC---------------C
Q 001363 808 FALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------S 866 (1092)
Q Consensus 808 ~~~s~d-g~~l~~~sdg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~s~~d~~~lasg~~d---------------g 866 (1092)
++++++ |+++++..++.|.+||.. ++.... ... +...+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 776666656689999988 665433 221 123578999999 78887776655 5
Q ss_pred cEEEEEcCCceeeEeeccccCCeEEEEEc----CCCCEEE-EEeCCCcEEEEEcC-CCceeeeeeeecCCCCcCCCCCce
Q 001363 867 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILV-SSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----pdg~~l~-s~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
.|..|+.. ++... +..+......++|+ ||++.|. +...++.|.+|+++ .++...........+... ..+.
T Consensus 154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGAD 229 (314)
T ss_dssp EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEE
T ss_pred eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCC
Confidence 67777766 55433 33344567889999 9997654 44567899999987 444322223333332210 1467
Q ss_pred EEEEccCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEE-ECCCcEEEEEcCCC
Q 001363 941 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1010 (1092)
Q Consensus 941 ~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~-~~Dg~i~vwd~~~~ 1010 (1092)
.++++++|+++++. .++.|.+||..+++.+..+ ..+...+.+++|++||+.|+++ ..++.|..|++...
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 89999999988874 6788999999877766553 3455789999999999955544 45678999998753
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.34 E-value=2.7e-10 Score=124.39 Aligned_cols=256 Identities=9% Similarity=0.040 Sum_probs=169.9
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCce-----------eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 001363 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 872 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd 872 (1092)
.+..+++++...++++|+...+.+|++++.+ ..... .+.. |+.++| |+.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence 6889999999999999998888889976544 11222 3555 999999 57889988 889999999
Q ss_pred cCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEE
Q 001363 873 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952 (1092)
Q Consensus 873 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 952 (1092)
+.+.........|..++.++.+.+.. +++++.||.|.+||++++.... +. ..|++++|||+| ..+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~---------~~Vs~v~WSpkG-~~v 177 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA---------QNVTSFDVTNSQ-LAV 177 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE---------ESEEEEEECSSE-EEE
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc---------CCceEEEEcCCc-eEE
Confidence 98876666677788889988887653 8889999999999999765322 11 259999999999 444
Q ss_pred EEeCCcEEEEEcCCcee--eeeec-----c---CCCCCEEEEEEecCCCEEEEEECC-----------CcEEEEEcCCCc
Q 001363 953 LVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSFVD-----------GTLSIHEASNLE 1011 (1092)
Q Consensus 953 ~~~d~~i~lwd~~~~~~--~~~~~-----~---~h~~~v~~l~fs~dg~~l~t~~~D-----------g~i~vwd~~~~~ 1011 (1092)
...||++++|+...++. ...+. . +|...|.++.|.+++.++++-+.. -.++|-....+.
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~ 257 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGS 257 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCC
Confidence 57899999999887775 44431 1 478899999999999999874431 145666633333
Q ss_pred eEE-ee-ccccccCCCCccccccceE-EEECCCCCCEEEEEeCCC-cEEEEecCCCCCccccCCCCCcccCCCCCCcc
Q 001363 1012 VQC-RI-LSTAYLRPTTSCLHVYPHA-IAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSE 1085 (1092)
Q Consensus 1012 ~~~-~~-~~~~~~~~~~~~~~v~~~~-~~~~p~d~~~l~~~~~dg-~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1085 (1092)
... .+ ...............+... -.|.|+..+++++++.-. .|.+++-. . ...+..|..+++.+.+.+
T Consensus 258 ~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~~~----~-~~~~~~Ds~Ra~lPl~~~ 330 (388)
T 1xip_A 258 ASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSK----Q-VIEPSQDSERAVLPISEE 330 (388)
T ss_dssp EEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSS----S-EEEESSGGGCCBCCBCTT
T ss_pred ceeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEeccc----c-EEeecCccccceeccCCC
Confidence 211 11 1000011000011112111 235443335666665544 57777532 1 233445567777766665
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.31 E-value=2.8e-10 Score=138.36 Aligned_cols=252 Identities=11% Similarity=0.052 Sum_probs=164.9
Q ss_pred cCCCCceEEeecCCCceEEEEEcC----CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+|...+..++|||||++++.+.+. ..+|+|||+.+|+.+.. . + +......++|+ |
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-D 184 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-G 184 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-T
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-C
Confidence 456678899999999965444333 35799999999986542 1 1 11112467899 9
Q ss_pred CCEEEEEeCCC-------------EEEEEEccCCCcccc-eEEEcc-cccceeEEEEecCCCcEEEEEEe---CCCcEEE
Q 001363 408 GSLLGVAYSKH-------------IVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKV 469 (1092)
Q Consensus 408 g~~las~~~d~-------------~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~---~d~~i~v 469 (1092)
|+.|+.++.+. .|++|++.++..-.. +..... |...+..+.|||||+++ +++.+ .++.|++
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYV 263 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEE
Confidence 99999998773 499999987643211 111223 44557889999999963 33333 2358999
Q ss_pred EECCCCc-eeEEEecCCcCeEEEeecccCCccEEEEEecC---CeEEEEEcCCCCc--eEEecCCCCceEEEEEccCCCE
Q 001363 470 WDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRR 543 (1092)
Q Consensus 470 wd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~dg~~ 543 (1092)
||+.++. ....+..+....... +.+. ++.+++....+ +.|..+++.+... ...+..+...+. .|+++++.
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~ 339 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY 339 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred EECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence 9998774 455666666655544 3322 33444555443 5799999987654 234444444444 89999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceE
Q 001363 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL 613 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~~~~~ 613 (1092)
|+..... ++...|++||..++.. ..+.... ...+..+.++++++.++....+ ++++.||+.+++..
T Consensus 340 lv~~~~~-~g~~~l~~~d~~g~~~-~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 340 LFAEYMV-DATARVEQFDYEGKRV-REVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEEE-TTEEEEEEECTTSCEE-EEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEEE-CCeeEEEEEECCCCee-EEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 8877653 3356799999885543 4443222 2457777788888877665444 78999999887643
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.31 E-value=8.7e-10 Score=118.76 Aligned_cols=229 Identities=10% Similarity=0.050 Sum_probs=150.2
Q ss_pred cEEEEEEecCCcEE-EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001363 736 KISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 814 (1092)
Q Consensus 736 ~i~~l~~s~~g~~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg 814 (1092)
-..+..|++++..+ ++...++.|..|+... +. ..... ....+.+++++++|
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~-~~~~~-----~~~~~~~i~~~~dG 65 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFT----------------------KQ-VQRVT-----MDAPVSSVALRQSG 65 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTT----------------------CC-EEEEE-----CSSCEEEEEEBTTS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCC----------------------Cc-EEEEe-----CCCceEEEEECCCC
Confidence 34578889865544 4445567777776433 22 11111 34568899999999
Q ss_pred CEEEEEeCCeEEEEEcCCceeeEEecC----CCCCeEEEEEcCCCCCEEEEEeCC---------CcEEEEEcCCceeeEe
Q 001363 815 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARSSEVISK 881 (1092)
Q Consensus 815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~d---------g~v~iwd~~~~~~~~~ 881 (1092)
+++++ .++.|.+||..+++....... ....+..++++| +++++++.... ..-.||.+.....+..
T Consensus 66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 143 (297)
T 3g4e_A 66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK 143 (297)
T ss_dssp SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE
T ss_pred CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE
Confidence 95554 577899999988765433221 123578899999 78877654322 2345555543222233
Q ss_pred eccccCCeEEEEEcCCCCEE-EEEeCCCcEEEEEc--CCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCC
Q 001363 882 LEGHSKRVTGLVFSDALNIL-VSSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET 957 (1092)
Q Consensus 882 l~~h~~~V~~l~~spdg~~l-~s~s~Dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~ 957 (1092)
+..+......++|+||++.| ++.+.++.|.+|++ .++.......+....... ..+..+++.++|++.++. ..+
T Consensus 144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETTT
T ss_pred EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCCC
Confidence 33344557889999999876 45566788999998 455443333333332211 246789999999988775 457
Q ss_pred cEEEEEcCCceeeeeeccCCCCCEEEEEEe-cCCCEEEEEEC
Q 001363 958 HLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFV 998 (1092)
Q Consensus 958 ~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~ 998 (1092)
.|..||..+++.+..+. .+...+++++|. ||++.|+.++.
T Consensus 221 ~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcC
Confidence 79999999898877643 445789999999 89887776654
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.29 E-value=1.1e-09 Score=117.84 Aligned_cols=233 Identities=12% Similarity=0.093 Sum_probs=155.9
Q ss_pred ccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCE
Q 001363 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1092)
Q Consensus 331 ~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 410 (1092)
..+..-..+..|+|++..++.+...++.|..||..+++.... .....+.+++++|+|++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~i~~~~dG~l 67 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---------------------TMDAPVSSVALRQSGGY 67 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---------------------ECSSCEEEEEEBTTSSE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------eCCCceEEEEECCCCCE
Confidence 334445668999997666888888889999999998764321 13467999999999996
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcc--cccceeEEEEecCCCcEEEEEEeC---------CCcEEEEECCCCceeE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD---------DKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~~~---------d~~i~vwd~~~~~~~~ 479 (1092)
+++ . ++.|.+||.++++... ...... ....+..++++|+|+ ++++... .....||.+.....+.
T Consensus 68 ~v~-~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 142 (297)
T 3g4e_A 68 VAT-I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK 142 (297)
T ss_dssp EEE-E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE
T ss_pred EEE-E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE
Confidence 555 3 4569999998865321 111111 224588999999998 4444322 1234555544322233
Q ss_pred EEecCCcCeEEEeecccCCccEE-EEEecCCeEEEEEcC--CCCce-----EEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~~~~-----~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
.+..+....+.++|++ +++.| ++.+.++.|.+|+++ ++... ..+.........+++.++|+..++...
T Consensus 143 ~~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-- 218 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-- 218 (297)
T ss_dssp EEEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET--
T ss_pred EEeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC--
Confidence 3333444567888854 55555 556668899999984 33211 122222346788999999987766543
Q ss_pred CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeC
Q 001363 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 598 (1092)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~ 598 (1092)
.+.|..||..+++.+..+..+. ..+.+++|. |+++.|++++.
T Consensus 219 --~~~v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 --GGRVIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp --TTEEEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred --CCEEEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence 4569999999999988887765 678999998 88888777654
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.28 E-value=7.2e-10 Score=119.99 Aligned_cols=240 Identities=12% Similarity=0.041 Sum_probs=161.2
Q ss_pred cceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEE
Q 001363 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1092)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~ 403 (1092)
...+..|..+.......+|+|+|+.++.++..++.|..|+. +++.. . +..+...+..++
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~ 92 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNA 92 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEE
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceee
Confidence 33445555566688899999999878889888999999998 45422 1 223566789999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEccc-ccceeEEEEecCCCcEEEEE----EeC-------------CC
Q 001363 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DK 465 (1092)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s----~~~-------------d~ 465 (1092)
++++|+++++...++.|.+|+.. ++.........+. ...+.++++.++|+ ++++ |.. .+
T Consensus 93 ~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 93 VDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred ECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCC
Confidence 99999977776666789999986 4422111111111 13477899999998 6665 332 25
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCCc---eEEecCCCCceEEEE
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMA 536 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~---~~~~~~~~~~i~~~~ 536 (1092)
.|..||..+++..... .....+.++|+ +|+..|+.+... +.|.+|++..... .............++
T Consensus 170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC 245 (305)
T ss_dssp EEEEECSSSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred eEEEEcCCCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence 6888887777654433 33456778885 466777766655 7899999875431 111122233455789
Q ss_pred EccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcE
Q 001363 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1092)
Q Consensus 537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 602 (1092)
+.++|+..++. . + .|.+|+. .++.+..+.... .+..++|+++++.|+.++.++..
T Consensus 246 ~d~~G~lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 246 VDRGGWLWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp ECTTSCEEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTEEE
T ss_pred ECCCCCEEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCeEE
Confidence 99999955443 2 2 3999998 577777766543 47889999999989888876533
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=1.3e-09 Score=122.70 Aligned_cols=248 Identities=11% Similarity=0.002 Sum_probs=163.6
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEEcCCceee
Q 001363 803 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 879 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~ 879 (1092)
.....++++++++++++.. ++.|++||..++......... .... ++|++ +++.|+++..++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 3567899999999776665 488999999988776555442 2333 99999 888888888766 7999998776544
Q ss_pred Eee----ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce-EEEEccCCCEEEEE
Q 001363 880 SKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET-HIQFHKDQTRFLLV 954 (1092)
Q Consensus 880 ~~l----~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~s~dg~~la~~ 954 (1092)
..+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+... .... .++|+|++..|.++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence 343 224566788999995555555777889999999876532211110 111111 0113 99999965544443
Q ss_pred --eCCcEEEEEcCCceeeeeeccCC---------------CCCEEEEEEecCCCEEEEEE-CCCcEEEEEcCCCceEEee
Q 001363 955 --HETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 955 --~d~~i~lwd~~~~~~~~~~~~~h---------------~~~v~~l~fs~dg~~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
.++.|+.|+.... +.. ..++ -.....++|+++|+++++-+ .+++|+.|++.+|......
T Consensus 285 d~~~~~I~~~~~~g~--~~~-~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEW-FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp ETTTTEEEEECTTCC--EEE-EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEE-EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 5678999987643 222 1122 13578999999999888777 7899999998888754332
Q ss_pred cccc---ccCCCC-ccccccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 1017 LSTA---YLRPTT-SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 1017 ~~~~---~~~~~~-~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
.... +..... ...--.|..++++|+ +.++++-..++.|+.+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 2100 000000 001134678999994 777888888888988765
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.27 E-value=1e-10 Score=128.86 Aligned_cols=273 Identities=11% Similarity=0.015 Sum_probs=174.8
Q ss_pred CCceEEeecCCCceEEEEEc--CCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 412 (1092)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .++-|.. ...+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~~----------~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQSG----------NAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCCS----------SCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCccc----------CcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 666653 2343666666555322 2211110 0224667899999999998766
Q ss_pred EEeC-----CCEEEEEEccCCCcccceEEEc----ccccceeEEEEecCCCcEEEEEEe---CCCcEEEEECCCCceeEE
Q 001363 413 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS 480 (1092)
Q Consensus 413 s~~~-----d~~i~iwd~~~~~~~~~~~~~~----~h~~~v~~~~~s~d~~~l~l~s~~---~d~~i~vwd~~~~~~~~~ 480 (1092)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6543 578999999988644422 221 12345689999987553 456655 688999999999987776
Q ss_pred EecCCcCeE-EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 481 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 481 ~~~~~~~v~-~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
+.+|..... ...+ ..++..+.+.+.+|.++.|. ..+..++++|||+.|+.+... ...++.
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 655432211 0222 22456677777888876663 135789999999998887642 224666
Q ss_pred EeCC---CCe-----EEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001363 560 WNES---EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1092)
Q Consensus 560 wd~~---~~~-----~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1092)
++.. .+. ... ...++. .....++++++|..+++...++.|.+||..+++........ .......++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va 297 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN 297 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence 5532 111 000 111222 34567899999998888888999999998666654433322 223467899
Q ss_pred EccCCCEEEEEeCCCeE
Q 001363 630 FNKNGTLLAVIANENRI 646 (1092)
Q Consensus 630 ~s~~~~~l~~~~~dg~i 646 (1092)
|.++++++++....+.+
T Consensus 298 ~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 298 FGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp ECTTSCEEEEECCGGGS
T ss_pred ECCCCcEEEEeCccccc
Confidence 99998877777654433
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.26 E-value=2.3e-10 Score=124.84 Aligned_cols=272 Identities=10% Similarity=-0.032 Sum_probs=174.2
Q ss_pred eEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe--------
Q 001363 348 TLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-------- 415 (1092)
Q Consensus 348 ~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-------- 415 (1092)
+++++...++ +|.+.|..+++.+.+.. .+ ..+ .+++||||++++++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG-~~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GA-FLS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------EC-TTC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEe------------------CC-CCC--ceEECCCCCEEEEEccccccccc
Confidence 4556655555 88899999999887522 12 234 799999999999986
Q ss_pred --CCCEEEEEEccCCCcccceEEEcc-c----ccceeEEEEecCCCcEEEEEEe--CCCcEEE--EECCCCceeEEEecC
Q 001363 416 --SKHIVQLYAYHGGSDARQQLEIDA-H----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGH 484 (1092)
Q Consensus 416 --~d~~i~iwd~~~~~~~~~~~~~~~-h----~~~v~~~~~s~d~~~l~l~s~~--~d~~i~v--wd~~~~~~~~~~~~~ 484 (1092)
.++.|.+||..+++.+..+. +.+ . ......++|+|||++ ++.+. .+..|.+ +|..+ +.++...
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36789999999998766432 220 0 123568999999995 44443 3567888 99877 4555321
Q ss_pred CcCeEEEeecccCCccEEEEEecCCeEEEEEcCC-----CCceE----EecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001363 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~ 555 (1092)
+. ..+.+.+. ..+++.+.||.+.+.|+.+ ++... .+.....+. . ++++..++..+. +
T Consensus 166 -~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 166 -SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp -SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred -Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 11 12223322 3556677788888888876 22111 011112233 3 666666665543 3
Q ss_pred eEEEEeCCCCe--EEEEEeec-------cccCCceEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCceEEEEe
Q 001363 556 FLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 556 ~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~~ 617 (1092)
.+.+.|..++. .+..+... .........+.++|++++++++.. ++.+.++|+.+.+.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 58888886542 22222110 000011122679999999887543 2356699999999998887
Q ss_pred CCCCCCCCceEEEccCCCE-EEEEe-CCCeEEEEECCCCceeeecccc
Q 001363 618 AGGGLPENPRICFNKNGTL-LAVIA-NENRIKILETPESNSVDAAGVL 663 (1092)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~-l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 663 (1092)
... ....++|+|||++ +++.. .++.|.++|+.+.+.+..+...
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 553 3688999999984 55555 5899999999999888877644
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.26 E-value=3.2e-10 Score=137.77 Aligned_cols=245 Identities=9% Similarity=0.054 Sum_probs=160.3
Q ss_pred CCCCcEEEEEECCCCCEEEEEe-----CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCC---
Q 001363 394 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 465 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--- 465 (1092)
+|...+..++|||||++||.+. ....|++||+.+|+.+.. .+ +......++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~--~~~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PL--KDVKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EE--EEEESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--cc--CCceeccEEEe-CCC--EEEEEEecCccc
Confidence 4566788999999999999653 235799999999875431 11 11123678999 999 566665553
Q ss_pred ----------cEEEEECCCCce----eEEEec-CCcCeEEEeecccCCccEEEEEec----CCeEEEEEcCCCC-ceEEe
Q 001363 466 ----------TIKVWDAVTGSR----TYSFEG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY 525 (1092)
Q Consensus 466 ----------~i~vwd~~~~~~----~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~-~~~~~ 525 (1092)
.|++|++.++.. +..... |...+.++.+ ++||++|+.... +..|.++|+.+.. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987753 222233 4445666777 557777654433 2479999988764 33444
Q ss_pred cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCC---
Q 001363 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--- 600 (1092)
Q Consensus 526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--- 600 (1092)
..+....... ++++|..++..+........|+.+|+.++.. ...+..+. ..+. .|++++++|+....++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence 4444444444 6788887776665433367899999988754 24455544 3343 8889999888766443
Q ss_pred cEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC----CeEEEEECCCCc
Q 001363 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN 655 (1092)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iw~~~~~~ 655 (1092)
.|++|++..+ ....+..... ..+..+.+++++..++....+ +++..||+.+++
T Consensus 351 ~l~~~d~~g~-~~~~l~~p~~-~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGK-RVREVALPGL-GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSC-EEEEECCSSS-SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCC-eeEEeecCCC-ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 6889998754 4455543321 234566677888877766554 889999987764
No 223
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.25 E-value=1.6e-05 Score=93.80 Aligned_cols=532 Identities=9% Similarity=0.001 Sum_probs=288.7
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeE
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1092)
+|+.+ ....|+..++++..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 45554 45568899998654211 11111 2345779999997764 556666788999999876544333332224466
Q ss_pred EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001363 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1092)
Q Consensus 490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1092)
.+++.+. ++.+.++-...+.|.+.+++...........-.....+++.|....|+..-.. ....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 7777543 34566666677889999987665444443444567899999976666655321 14568888876554333
Q ss_pred EEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001363 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1092)
Q Consensus 570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1092)
.... ......+++++++..|+.+. ..+.|..+|+..... ..+... ......+++.. +.++++-...+.|..
T Consensus 161 l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 161 LVPN----VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp EECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EECC----CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 3322 25788999999887777765 567899999876544 333222 22345777765 445555555788988
Q ss_pred EECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCcccccccc
Q 001363 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 728 (1092)
Q Consensus 649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~ 728 (1092)
.|..+++....+.........+.+....... + .+.....++. + ..+-+-... ....|. -
T Consensus 233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~-------~n~C~~~ng~----C---~~~C~~~~~--~~~~C~---C 291 (628)
T 4a0p_A 233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--G-------WNECASSNGH----C---SHLCLAVPV--GGFVCG---C 291 (628)
T ss_dssp EETTTCCSCEEEECSCCSCCEEEEECGGGSC--C-------CCTTTTTGGG----C---SSEEEEETT--TEEEEE---C
T ss_pred EECCCCCceEEEecCCCCcceeeeeeecccc--c-------ceEeccCCCC----c---chhhhcCCC--CCeeEE---c
Confidence 8877775555444333333333322111000 0 0000000000 0 000000000 000000 0
Q ss_pred CC--ccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001363 729 PS--KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 729 ~~--~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~ 806 (1092)
+. ........|. +....++.+. ...|+-..+... ... -..... ..-..+.
T Consensus 292 ~~g~~l~~d~~~C~---~~~~~Ll~s~-~~~i~~i~l~~~--------------------~~~-~~~l~~---~~~~~~~ 343 (628)
T 4a0p_A 292 PAHYSLNADNRTCS---APTTFLLFSQ-KSAINRMVIDEQ--------------------QSP-DIILPI---HSLRNVR 343 (628)
T ss_dssp STTCEECTTSSCEE---CCSSEEEEEE-TTEEEEECCCTT--------------------CCC-CEECCC---TTCSCEE
T ss_pred CCCcEecccCCcCc---cccceeeeec-cceEEEEecccc--------------------cCc-eEEEEe---hhcCCce
Confidence 00 0000001111 1112222222 223322221110 000 001111 1234577
Q ss_pred EEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001363 807 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
.++|.+.+..|..+. .+.|+.++.........+.. ....+..+|+....+++..+-+..+.|.+.++. |+.
T Consensus 344 ~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~ 422 (628)
T 4a0p_A 344 AIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRS 422 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCE
T ss_pred EEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCe
Confidence 899999877777776 47788888764433333332 234678999988335555666677899999987 444
Q ss_pred eEee-ccccCCeEEEEEcC-CCCEEEEEeCCC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE
Q 001363 879 ISKL-EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954 (1092)
Q Consensus 879 ~~~l-~~h~~~V~~l~~sp-dg~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~ 954 (1092)
...+ ........+|++.| .|.++++-.... .|...+++...... .+.. .. .....+++.+++..|..+
T Consensus 423 ~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~~---~l---~~P~gla~D~~~~~LYw~ 494 (628)
T 4a0p_A 423 VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFFS---GL---SKPIALALDSRLGKLFWA 494 (628)
T ss_dssp EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EECS---SC---SCEEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEec---cC---CCccEEEEeCCCCEEEEE
Confidence 4443 33456789999999 555555543332 46666665432111 1211 11 256899999998888775
Q ss_pred e--CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEee
Q 001363 955 H--ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 955 ~--d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
. .+.|..+++. |.....+.........+++... +..+++=.....|...|..+|+....+
T Consensus 495 D~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 495 DSDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp ETTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred eCCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 4 4678889985 4444444433344567777654 445555545677888888877654443
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.25 E-value=3.1e-10 Score=123.79 Aligned_cols=196 Identities=11% Similarity=0.005 Sum_probs=128.0
Q ss_pred eEEEEecCCCEEEEEe---CCeEEE--EEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-----
Q 001363 806 PCFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----- 875 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~s---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----- 875 (1092)
..++++|||++++++. +..+.+ +|..+ +.++.... . ..+.|++...+++.+.||.+.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 3578888988888875 256888 88877 34443211 1 223343455666677888888889887
Q ss_pred ceeeEe----eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCcCCCCCceEEEEc
Q 001363 876 SEVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFH 945 (1092)
Q Consensus 876 ~~~~~~----l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~s 945 (1092)
++.... +.-...+. + ++++..++..+. +.|.+.|+.+........+... .+... .....++|+
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s 272 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKL 272 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEE
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEc
Confidence 543321 11122343 3 667777666667 8999999976432211111111 01000 122337899
Q ss_pred cCCCEEEEE-e-C--------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCceE
Q 001363 946 KDQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus 946 ~dg~~la~~-~-d--------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~Dg~i~vwd~~~~~~~ 1013 (1092)
||++.+.++ . . +.+.++|+.+++.+..+..+. ....++|+|||+ .+++.. .+++|.++|+.+++.+
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 999988874 3 2 357799999999988765443 688999999998 456666 5899999999999999
Q ss_pred Eeec
Q 001363 1014 CRIL 1017 (1092)
Q Consensus 1014 ~~~~ 1017 (1092)
.++.
T Consensus 351 ~~I~ 354 (368)
T 1mda_H 351 SSVE 354 (368)
T ss_dssp EECC
T ss_pred EEEE
Confidence 8876
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.22 E-value=7e-10 Score=122.19 Aligned_cols=273 Identities=7% Similarity=-0.011 Sum_probs=175.4
Q ss_pred ccEEEEEEecCCcEEEEeec--CCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001363 735 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 812 (1092)
Q Consensus 735 ~~i~~l~~s~~g~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~ 812 (1092)
..+..++++++|+.+++... ++.+++|.+... .... ..-|. .....+-..+..+++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g------~~~~---~p~~~-----------~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD------GLIP---FPPQS-----------GNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT------EEEE---SCCCC-----------SSCCCCCSCEEEEEECS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC------Ceec---CCCcc-----------cCcccceeEeeEEEEcC
Confidence 46788999999998777542 343677776511 1000 00000 00112556789999999
Q ss_pred CCCEEEEEe------CCeEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCCCEEEEEe---CCCcEEEEEcCCce
Q 001363 813 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE 877 (1092)
Q Consensus 813 dg~~l~~~s------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~ 877 (1092)
+|+++++-. ++.|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 998766553 378999999999877766432 235689999983454555555 57899999999998
Q ss_pred eeEeeccccCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe-
Q 001363 878 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 955 (1092)
Q Consensus 878 ~~~~l~~h~~~V~-~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~- 955 (1092)
....+.+|..... ...++++|..+.+.+.|+.++.|.. .+..++|+|||+.|.++.
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence 7777766533211 1445667878888888887765531 256899999999888753
Q ss_pred CC-cEEEEEcCC---ce-----eeeee-ccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCC
Q 001363 956 ET-HLAIYEAEE---LT-----CLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus 956 d~-~i~lwd~~~---~~-----~~~~~-~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
.+ .+..++... +. ....+ ..++.+....++++++|.++++...++.|.+||..+|+...... .+
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~-- 288 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE-- 288 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG--
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC--
Confidence 33 455554321 10 00000 11234456789999999999998889999999986675432221 11
Q ss_pred CccccccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001363 1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1026 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1059 (1092)
....+..++++| ++.++++....+.+.+|+
T Consensus 289 ---~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 289 ---KLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ---GGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred ---ceecCCeeEECC-CCcEEEEeCccccccccc
Confidence 123567889998 477777777665554443
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=1.1e-08 Score=122.86 Aligned_cols=199 Identities=11% Similarity=0.089 Sum_probs=133.9
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcC----------e-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 525 (1092)
.++.++.++.|..+|..+|+.+.++...... + ..+++ ++..++.++.|+.|..+|..+++.+..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4666777899999999999999887643221 0 11222 3457888899999999999999988876
Q ss_pred cCC-C----CceEEEEEccCCCEEEEEecCCC--CceeEEEEeCCCCeEEEEEeecccc---------------------
Q 001363 526 DAP-G----LGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQ--------------------- 577 (1092)
Q Consensus 526 ~~~-~----~~i~~~~~s~dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~--------------------- 577 (1092)
... . ..+.+.-.. .+..+++++...+ .++.|+.+|..+|+.+-.+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 1 112111111 2345555443211 2578999999999998777643210
Q ss_pred --------CCceEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceEEEEeCCCCC-------C
Q 001363 578 --------HNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------P 623 (1092)
Q Consensus 578 --------~~~v~~~~~~~~~~~l~~~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~ 623 (1092)
......++++|++..++.++.++ .|..+|..+|+.+..++...+. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 01113578889999999887664 4999999999999887753221 1
Q ss_pred CCceEEEccCC---CEEEEEeCCCeEEEEECCCCceeeec
Q 001363 624 ENPRICFNKNG---TLLAVIANENRIKILETPESNSVDAA 660 (1092)
Q Consensus 624 ~v~~v~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~ 660 (1092)
....+....+| ..+++++.+|.++++|..+++.+...
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 12223333477 68899999999999999999876554
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=8.6e-09 Score=112.44 Aligned_cols=224 Identities=13% Similarity=0.032 Sum_probs=149.3
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
-..+.+|+|++..++.++..++.|..||..+++... + .....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 456789999876688888888999999998875431 1 123579999999999887765
Q ss_pred CCCEEEEEEccCCCcccceEEEc-c-cccceeEEEEecCCCcEEEEEEeC------CCcEEEEECCCCceeEEEecCCcC
Q 001363 416 SKHIVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~-~-h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
.++ |.+||..+++... ..... + ....+.+++++|+|+ ++++... .+.|..++ +++.. .+..+...
T Consensus 108 ~~g-l~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DDG-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TTE-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CCC-EEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 444 9999998876321 11111 1 124688999999998 4444432 24555556 45433 33333345
Q ss_pred eEEEeecccCCccEE-EEEecCCeEEEEEcC--CC-Cc-----eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001363 488 VYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~ 558 (1092)
.+.++|++ +++.+ ++.+.++.|.+|+++ ++ .. ...+.........+++.++|+..++... .+.|.
T Consensus 181 ~~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~ 254 (326)
T 2ghs_A 181 PNSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD 254 (326)
T ss_dssp EEEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred cCCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence 67788854 66655 444567899999986 43 21 1122223445678999999987766542 34699
Q ss_pred EEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeC
Q 001363 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 598 (1092)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~ 598 (1092)
.||. +++.+..+.... ..+.+++|+ ++++.|++++.
T Consensus 255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEB
T ss_pred EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEec
Confidence 9998 677777776544 579999998 88887766553
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=7.4e-09 Score=124.31 Aligned_cols=227 Identities=14% Similarity=0.123 Sum_probs=151.9
Q ss_pred CCeEEEEEcCCceeeEEecCCCCC--------------------------------eEEEEEcCCCCCEEEEEeCCC---
Q 001363 822 GGVISLYIVMTFKTILTIMPPSPT--------------------------------ATSLAFNPHDNNVIAIGMDDS--- 866 (1092)
Q Consensus 822 dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~s~~d~~~lasg~~dg--- 866 (1092)
++.|+.+|..+|+.+.++...... ...++++| ++.+|+.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 467888888888887766432211 13578899 677888887764
Q ss_pred ----------------cEEEEEcCCceeeEeecc--cc-------CCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCC
Q 001363 867 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW 918 (1092)
Q Consensus 867 ----------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg---~~l~s~s~Dg~I~iwd~~~~ 918 (1092)
.|..+|..+|+.+..+.. |. ....-+....+| +.++.++.+|.|.++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999999877653 31 122223444477 68999999999999999998
Q ss_pred ceeeeeeeecCC--------CC------------c-----CCC--CCceEEEEccCCCEEEEE-eC--------------
Q 001363 919 GIQTCRSLQTPD--------GV------------M-----TLA--PSETHIQFHKDQTRFLLV-HE-------------- 956 (1092)
Q Consensus 919 ~~~~~~~~~~~~--------~~------------~-----~~~--~~v~~l~~s~dg~~la~~-~d-------------- 956 (1092)
+........... +. . ... ..-..++|+|++.++.+. .+
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 865422211000 00 0 000 001367899999888773 21
Q ss_pred -----------------------------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001363 957 -----------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 957 -----------------------------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
+.|..||+.+++.+.... +..++....++.+|..+++++.||.+++||+
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 679999999999876643 3445556667888889999999999999999
Q ss_pred CCCceEEeeccccccCCCCccccccceEEEECCCCCC-EEEEEeC----------------CCcEEEEecC
Q 001363 1008 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT-QFAVGLT----------------NGEVYVIEPN 1061 (1092)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~-~l~~~~~----------------dg~v~~w~~~ 1061 (1092)
.+|+.+.++.... + +...-+.+.+ ++. ++++.+. .+.+.+|.+.
T Consensus 506 ~tG~~lw~~~~~~----~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 506 ATGEKLWEAPTGT----G-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp TTCCEEEEEECSS----C-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CCCceeeeeeCCC----C-----cccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 9999998887332 1 1112234444 344 4444333 4788999987
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.18 E-value=7.4e-09 Score=124.57 Aligned_cols=383 Identities=10% Similarity=0.104 Sum_probs=216.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcC----------e-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 525 (1092)
.++.++.++.|..+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 4667777899999999999999888643221 0 11111 2357888999999999999999988766
Q ss_pred cCC-C-CceEEEEEcc---CCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccc----------------------
Q 001363 526 DAP-G-LGCTRMAYSA---NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL---------------------- 576 (1092)
Q Consensus 526 ~~~-~-~~i~~~~~s~---dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~---------------------- 576 (1092)
... . .....+..+| ++. ++++.... ..++.|+.||..+|+.+-.+.....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 543 1 1101111112 444 44443211 1367899999999999877653110
Q ss_pred ------cCCceEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEeCCCCC-------CC
Q 001363 577 ------QHNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PE 624 (1092)
Q Consensus 577 ------~~~~v~~~~~~~~~~~l~~~s~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~ 624 (1092)
+......++++|++..++.++.++. |..||..+|+.+..+....+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 0011125788899899999887764 999999999999888653221 01
Q ss_pred CceEEEccCCC---EEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccc
Q 001363 625 NPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 701 (1092)
Q Consensus 625 v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 701 (1092)
........+|+ .++.++.+|.++++|..+++.+......... +...+.+. .+..+
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~~~~---------------------~~~pi 364 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS-WTKGMDMK---------------------TGRPI 364 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEEETT---------------------TTEEE
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc-cccccCcc---------------------CCCcc
Confidence 11112223565 7889999999999999999877543321100 00000000 00000
Q ss_pred eeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCc
Q 001363 702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 781 (1092)
Q Consensus 702 ~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 781 (1092)
... .. .|.. +.....+..|.......-..++++|+...+++...+....++......
T Consensus 365 ~~~----~~-~~~~----~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~-------------- 421 (689)
T 1yiq_A 365 LDE----EN-AAYW----KNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP-------------- 421 (689)
T ss_dssp ECH----HH-HCTT----TSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC--------------
T ss_pred cch----hh-cccc----CCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc--------------
Confidence 000 00 0000 000111222222222233458899998888887776544443321100
Q ss_pred cccCCCCCceeeecCCCCCCCCCeeEEEEecC---CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC
Q 001363 782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN---DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857 (1092)
Q Consensus 782 ~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~d---g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 857 (1092)
.|....+. . ..... +...|. +....... +|.|..||+.+++.+..+..+.. ...-.++. .+.
T Consensus 422 ~~~~~~~~-~---------~~g~~--~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agg 487 (689)
T 1yiq_A 422 KRNPFKSM-Y---------QLGLR--TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGN 487 (689)
T ss_dssp CCCSCTTS-C---------CCSSE--ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTT
T ss_pred cccccccc-c---------ccCcc--ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceE-CCC
Confidence 01110000 0 00000 000000 00000001 37899999999999888765432 22334555 566
Q ss_pred EEEEEeCCCcEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEE
Q 001363 858 VIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 903 (1092)
Q Consensus 858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s 903 (1092)
++++|+.||.++.||.++|+.+.+++...+. ..-+.|+.||+..+.
T Consensus 488 lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 488 LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 9999999999999999999999888754332 234677788875443
No 230
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.17 E-value=1.2e-08 Score=111.44 Aligned_cols=225 Identities=10% Similarity=0.018 Sum_probs=145.4
Q ss_pred EEEEEEecCCcEE-EEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001363 737 ISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 815 (1092)
Q Consensus 737 i~~l~~s~~g~~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~ 815 (1092)
..+.+|++++..+ ++...++.|..|+... +. ..... ....+.+++++++|+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~-~~~~~-----~~~~v~~i~~~~dg~ 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS----------------------GR-KTVHA-----LPFMGSALAKISDSK 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT----------------------TE-EEEEE-----CSSCEEEEEEEETTE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC----------------------Cc-EEEEE-----CCCcceEEEEeCCCe
Confidence 4567899975544 4444567777776432 21 11111 234688999999999
Q ss_pred EEEEEeCCeEEEEEcCCceeeEEecC----CCCCeEEEEEcCCCCCEEEEEeC------CCcEEEEEcCCceeeEeeccc
Q 001363 816 YLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMD------DSTILIYNARSSEVISKLEGH 885 (1092)
Q Consensus 816 ~l~~~sdg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~------dg~v~iwd~~~~~~~~~l~~h 885 (1092)
++++. ++.|.+||..+++....... ....+..++++| +++++++... .+.|..++ +++.. .+..+
T Consensus 103 l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~ 177 (326)
T 2ghs_A 103 QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD 177 (326)
T ss_dssp EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE
T ss_pred EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC
Confidence 87765 55599999988775433221 123578999999 7877665442 24566666 45543 33334
Q ss_pred cCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcC--CC-ceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEE
Q 001363 886 SKRVTGLVFSDALNILVSS-GGDAQIFVWDVD--GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 960 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~-s~Dg~I~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~ 960 (1092)
......++|+||++.|..+ +.++.|.+|++. ++ +......+....... ..+..+++.++|.+.++. .++.|.
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEE
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEE
Confidence 4557789999999876544 557889999986 54 322212222222111 236789999999987775 457899
Q ss_pred EEEcCCceeeeeeccCCCCCEEEEEEe-cCCCEEEEEECC
Q 001363 961 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD 999 (1092)
Q Consensus 961 lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~D 999 (1092)
.||. +++.+..+ ..+...+++++|+ +|++.|++++..
T Consensus 255 ~~d~-~g~~~~~i-~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARY-EVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEE-ECCCCCcEEEEEecCCCCEEEEEecC
Confidence 9998 56665553 3445679999999 898877665544
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.17 E-value=7e-08 Score=107.94 Aligned_cols=151 Identities=15% Similarity=0.071 Sum_probs=100.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCC---------cCeE-EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------~~v~-~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 526 (1092)
.++.++.++.|..+|.++|+.+....... ..+. .... ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 47778889999999999999987775432 2222 2222 33578888999999999999988877665
Q ss_pred CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC--CceEEEEEcCCCCEEEEEeCCCcEEE
Q 001363 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
........... .+ ..+++++. ++.|+.+|..+|+.+..+....... ......... +..+++++.++.+..
T Consensus 131 ~~~~~~~~p~~-~~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVV-SD-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEE-ET-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEE-EC-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 44322111222 23 35555543 5679999999999887766533000 000111222 457888888999999
Q ss_pred EECCCCceEEEEeCC
Q 001363 605 WDMNKVQLLTTIDAG 619 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~ 619 (1092)
+|..+|+.+......
T Consensus 203 ~d~~tG~~~w~~~~~ 217 (376)
T 3q7m_A 203 VLMEQGQMIWQQRIS 217 (376)
T ss_dssp EETTTCCEEEEEECC
T ss_pred EECCCCcEEEEEecc
Confidence 999999988777643
No 232
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.16 E-value=8.2e-09 Score=111.60 Aligned_cols=232 Identities=14% Similarity=0.083 Sum_probs=152.2
Q ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001363 394 DPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 394 ~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
.........+|+|+|+ ++++...++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+||.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 3555677899999999 4556667789999998 443 22 3445666789999999998 5666556678999997
Q ss_pred CCCceeEEEecC----CcCeEEEeecccCCccEEEE----Eec-------------CCeEEEEEcCCCCceEEecCCCCc
Q 001363 473 VTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGLG 531 (1092)
Q Consensus 473 ~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~ 531 (1092)
+ ++........ ...++.+++. ++|.++++ |.. .+.|..+|..+++..... ....
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred C-CCEEEEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 6 6533222111 1235667774 47777776 322 245666766555544332 3345
Q ss_pred eEEEEEccCCCEEEEEecCC--CCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001363 532 CTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1092)
Q Consensus 532 i~~~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 607 (1092)
...++|+||++.|+.+.... .+.+.|+.|++..+... ..+... .......+++.++|+ +.+++.+ .|.+|+.
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS 265 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSC-EEECCSS-EEEEECT
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCC-EEEecCC-cEEEECC
Confidence 67899999999887765421 01257999998765421 111111 124456788999998 4444444 4999998
Q ss_pred CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001363 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1092)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1092)
+++.+..+..+. .+.+++|+++++.|.+++.++.
T Consensus 266 -~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 -DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred -CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence 577777776553 3789999999998988887643
No 233
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.16 E-value=2.2e-05 Score=92.56 Aligned_cols=521 Identities=8% Similarity=-0.028 Sum_probs=269.7
Q ss_pred CCEEEEEEccCCC-cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-eEEEecCCcCeEEEeec
Q 001363 417 KHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPH 494 (1092)
Q Consensus 417 d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~i~~~ 494 (1092)
...|+..++.+.. ... .+...-.....++|++.+.. ++++-...+.|..++++.... ...+...-.....+++.
T Consensus 17 ~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD 92 (619)
T 3s94_A 17 RRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92 (619)
T ss_dssp SSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred cccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence 4457777777542 111 11223345778999997764 445555677899999876532 22333333567788885
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001363 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
+. ++.+.++-...+.|.+.+++.................+++.|.+.+|+..... ....|...++............
T Consensus 93 ~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 93 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECSS
T ss_pred ec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeCC
Confidence 53 33566666678899999998765544443444456789999986666655321 1346777776543332222222
Q ss_pred cccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 575 QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
......+++++++..|+.+. ..+.|...|+............ ......+++..+ .++++-...+.|...|..+
T Consensus 170 ---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 170 ---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp ---CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSS
T ss_pred ---CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCC
Confidence 25678999999877777664 5677888888754433322211 123457777665 4444445578899999887
Q ss_pred CceeeecccccCceeeeeec-CCCcccc--ccc----cCCceeecCCCCCCCccceeeccccccceeccccccCcccccc
Q 001363 654 SNSVDAAGVLSDNLRKLSVN-PISTVTG--AGI----ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 726 (1092)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~-~~~~~~~--~~~----~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~ 726 (1092)
++....+.........+++. +.....+ .+. .-....+. +|..........+|...
T Consensus 244 g~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~l--------------- 305 (619)
T 3s94_A 244 GEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVKL--------------- 305 (619)
T ss_dssp CCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCCB---------------
T ss_pred CcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEEC---CCCCCCceEeCCchhee---------------
Confidence 76555444333223333332 1110000 000 00000010 00000000000000000
Q ss_pred ccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001363 727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 806 (1092)
Q Consensus 727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~ 806 (1092)
. .....|. +..+.++..+..+.|+..++..... . .....+. .-..+.
T Consensus 306 --~----~d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~-~~~~~~~---~l~~~~ 352 (619)
T 3s94_A 306 --L----ENGKTCK---DGATELLLLARRTDLRRISLDTPDF--------------------T-DIVLQLE---DIRHAI 352 (619)
T ss_dssp --C----TTSSCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------C-CEECCCS---CCSSEE
T ss_pred --c----ccCcccC---CCCceEEEEEcccceEEEecCCCcc--------------------c-eeEEecc---ccCccE
Confidence 0 0000000 0011122223334454444332110 0 0011111 223467
Q ss_pred EEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc
Q 001363 807 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
+++|.+.+..|..++ .+.|..++.........+...-.....+|+.+.++++..+-+..+.|.+.++........+..
T Consensus 353 ~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~ 432 (619)
T 3s94_A 353 AIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISE 432 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT
T ss_pred EEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEEC
Confidence 899998766666665 578999988754433334333356678999863555666666678999999875432222233
Q ss_pred ccCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--eCCcEE
Q 001363 885 HSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLA 960 (1092)
Q Consensus 885 h~~~V~~l~~spdg~~l~s~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~i~ 960 (1092)
.-....+|++.|....|..+.. ...|...+++...... ... ... .....+++++++..|..+ ..+.|.
T Consensus 433 ~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~--l~~---~~l---~~P~GlalD~~~~~LY~aD~~~~~I~ 504 (619)
T 3s94_A 433 DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV--LVN---TSL---GWPNGLALDYDEGKIYWGDAKTDKIE 504 (619)
T ss_dssp TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EEC---SSC---SCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE--EEe---CCC---CCCeeeEEcccCCEEEEEECCCCEEE
Confidence 4456889999997444444432 3566666766533211 111 111 257899999988877775 446788
Q ss_pred EEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001363 961 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 961 lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~ 1011 (1092)
.+++.... ...+....-....+++...+ ...++-...+.|...+..+|.
T Consensus 505 ~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 505 VMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred EEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 88885433 33322222223345555433 333333345667777777773
No 234
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.16 E-value=5.9e-10 Score=121.74 Aligned_cols=177 Identities=12% Similarity=0.053 Sum_probs=133.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCc--------ccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEE
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 468 (1092)
.+++.+++++...++++|+.++ +.+|++..... .... ....+.. |+.++| |++ +|+++ .++.|+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~ 109 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALY 109 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEE
Confidence 3789999999999999999986 66799764330 1111 1224666 999999 888 67777 789999
Q ss_pred EEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001363 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1092)
Q Consensus 469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 548 (1092)
+||+.+.........|...+.++.+.+. .+++++.||.+.+||+....... ....|++++|||+| ++.+.
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE
T ss_pred EEEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE
Confidence 9999887766677778888888776432 28889999999999998766543 33589999999999 45555
Q ss_pred cCCCCceeEEEEeCCCCeE--EEEEee------ccccCCceEEEEEcCCCCEEEE
Q 001363 549 TSKEGESFLVEWNESEGAI--KRTYQG------LQLQHNSVSVVHFDTAKDQILA 595 (1092)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~--~~~~~~------~~~~~~~v~~~~~~~~~~~l~~ 595 (1092)
. ++.+++|+...++. .+++.. +..+...|.++.|.+++.++++
T Consensus 180 ~----dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 180 K----DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp T----TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred c----CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 4 56699999888775 555621 0112478999999999887776
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.14 E-value=6.6e-08 Score=105.24 Aligned_cols=233 Identities=14% Similarity=0.109 Sum_probs=152.0
Q ss_pred EEe--cCCCEEEEEe--CCeEEEEEcCCc----eeeEEec------C-CCCCeEEEEEcCCCCCEEEEEeCC------Cc
Q 001363 809 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM------P-PSPTATSLAFNPHDNNVIAIGMDD------ST 867 (1092)
Q Consensus 809 ~~s--~dg~~l~~~s--dg~i~iwd~~~~----~~~~~~~------~-~~~~i~~l~~s~~d~~~lasg~~d------g~ 867 (1092)
.++ +++++|++.+ +++|.++|+.+. +...++. . ....-..+.++| ++ +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 346 8899998887 588999999765 6666663 0 112446678899 77 66666655 78
Q ss_pred EEEEEcCCceeeEeeccccC---CeEEEEEcCCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeee
Q 001363 868 ILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS 925 (1092)
Q Consensus 868 v~iwd~~~~~~~~~l~~h~~---~V~~l~~spdg~~l~s~s-------------------~Dg~I~iwd~~~~~~~~~~~ 925 (1092)
|.++|..+.+.+.++..-.+ --..+.|+|+++.+++.. .+.+|.+||+.+++... .
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence 99999999999998873222 234588999999999874 36889999999865333 2
Q ss_pred eecCCCCcCCCCCceEEEE--ccCCCEEEEE-------eCCcEEEEEcCCceeeeee---ccC----------------C
Q 001363 926 LQTPDGVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLKQW---FPI----------------S 977 (1092)
Q Consensus 926 ~~~~~~~~~~~~~v~~l~~--s~dg~~la~~-------~d~~i~lwd~~~~~~~~~~---~~~----------------h 977 (1092)
+....... ....+.| +|+++++.++ .+++|.+|....++..... ... -
T Consensus 244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 33321111 2445655 9999988773 3457877665544311110 000 0
Q ss_pred CCCEEEEEEecCCCEEEEEEC-CCcEEEEEcCC---CceEEeeccccccCCCCc----cccccceEEEECCCCCCEEEEE
Q 001363 978 SVPISQATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYLRPTTS----CLHVYPHAIAAHPLKPTQFAVG 1049 (1092)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~~~-Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~p~d~~~l~~~ 1049 (1092)
......+.+|+||++|.++.. .+.|.++|+.. .+++..+..........| .....|..++++| |+++|+++
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa 398 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT 398 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence 245788999999999988775 68999999863 355555543211100000 0012466789999 58888888
Q ss_pred e
Q 001363 1050 L 1050 (1092)
Q Consensus 1050 ~ 1050 (1092)
.
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 7
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.13 E-value=7.1e-08 Score=107.87 Aligned_cols=277 Identities=11% Similarity=0.048 Sum_probs=172.0
Q ss_pred EEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC
Q 001363 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 429 (1092)
Q Consensus 350 lasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 429 (1092)
+.+++.++.|..+|..+|+.+-........ .. .......+.+ ....++..+++++.++.|..+|..+|+
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~------~~----~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLAEKD------GW----FSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC---------C----CSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCcccc------cc----ccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 556677899999999999977543321000 00 0000122222 112246678888899999999999997
Q ss_pred cccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCe-----EEEeecccCCccEEEE
Q 001363 430 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----YSLCPHAKENIHFIFS 504 (1092)
Q Consensus 430 ~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~~~l~s 504 (1092)
.+-. .............. ++ .++.++.++.|..+|..+|+.+.......... ..... .+..++.
T Consensus 125 ~~W~---~~~~~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~~ 193 (376)
T 3q7m_A 125 VAWQ---TKVAGEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAVV 193 (376)
T ss_dssp EEEE---EECSSCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEEE
T ss_pred EEEE---EeCCCceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEEE
Confidence 5532 22222111222222 34 47778889999999999999988776433221 11111 1246788
Q ss_pred EecCCeEEEEEcCCCCceEEecCCCCc----eEE---EEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 505 ISVDGKIKAWLYDSLGARVDYDAPGLG----CTR---MAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 505 ~~~dg~i~vwd~~~~~~~~~~~~~~~~----i~~---~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
++.+|.+..+|..+++........... +.. +...| .+..++.++. ++.++.+|..+|+.+.....
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~-- 267 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY----NGNLTALDLRSGQIMWKREL-- 267 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT----TSCEEEEETTTCCEEEEECC--
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec----CcEEEEEECCCCcEEeeccC--
Confidence 888999999999988877665432210 000 00111 2445555543 45699999999988766543
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 001363 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 655 (1092)
.....+.. ++..+++++.++.+..+|..+++.+........ ..+..... .+..+++++.+|.+..+|..+++
T Consensus 268 ---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 268 ---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp ---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred ---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 22333333 467888899999999999999998877752211 11222233 25688899999999999999998
Q ss_pred eeeeccc
Q 001363 656 SVDAAGV 662 (1092)
Q Consensus 656 ~~~~~~~ 662 (1092)
.+.....
T Consensus 340 ~~~~~~~ 346 (376)
T 3q7m_A 340 FVAQQKV 346 (376)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7665543
No 237
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.10 E-value=1.8e-08 Score=121.22 Aligned_cols=290 Identities=12% Similarity=0.050 Sum_probs=180.4
Q ss_pred EEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-CcE-EEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001363 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1092)
Q Consensus 350 lasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V-~~l~~spdg~~las~~~d~~i~iwd~~~ 427 (1092)
+.+++.++.|.-+|..+|+.+-.+....- ... ..... ..+ ..+++ ++..|++++.|+.|..+|..+
T Consensus 73 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~-----~~~-----~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~T 140 (689)
T 1yiq_A 73 MYTTGPFSVVYALDARDGRLIWKYDPQSD-----RHR-----AGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKT 140 (689)
T ss_dssp EEEECGGGCEEEEETTTCCEEEEECCCCC-----GGG-----GGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred EEEEcCCCeEEEEECCCCceeEEEcCCCC-----ccc-----cccccccCCCCccEE--ECCEEEEEccCCEEEEEECCC
Confidence 55566789999999999998765332100 000 00000 000 01122 467888899999999999999
Q ss_pred CCcccceEEEcccc---cceeEEEEecCCCcEEEEEEe-----CCCcEEEEECCCCceeEEEecCC-c------------
Q 001363 428 GSDARQQLEIDAHV---GNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHG-A------------ 486 (1092)
Q Consensus 428 ~~~~~~~~~~~~h~---~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~-~------------ 486 (1092)
|+.+-.... ..+. ..+.+.-.-.++. +++..+ .++.|+.||.++|+.+..+.... .
T Consensus 141 G~~~W~~~~-~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 141 GQRAWSVDT-RADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp CCEEEEEEC-CSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred CCEeeeecC-cCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 986543211 1011 1111111112554 333322 37899999999999998775211 0
Q ss_pred ------------------CeEEEeecccCCccEEEEEecCCe-------------------EEEEEcCCCCceEEecCCC
Q 001363 487 ------------------PVYSLCPHAKENIHFIFSISVDGK-------------------IKAWLYDSLGARVDYDAPG 529 (1092)
Q Consensus 487 ------------------~v~~i~~~~~~~~~~l~s~~~dg~-------------------i~vwd~~~~~~~~~~~~~~ 529 (1092)
....+++ +++..+++.++.++. |..+|.++++.+..+....
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~ 295 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAY--DPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP 295 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccCCceeeecCCCCccccceeE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence 0012344 334567888887764 9999999999887665421
Q ss_pred C---------ceEEEEEccCCC---EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc---------------------
Q 001363 530 L---------GCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--------------------- 576 (1092)
Q Consensus 530 ~---------~i~~~~~s~dg~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 576 (1092)
. +........+|+ .++.+.. ++.++++|..+|+.+........
T Consensus 296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 296 GDAWDYTATQHMILAELPIDGKPRKVLMQAPK----NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred cccccccCCCCcEEEeeccCCcEEEEEEEECC----CCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 1 122222233565 5555543 77899999999998744321110
Q ss_pred ---------------cCCceEEEEEcCCCCEEEEEeC-------------------------------------------
Q 001363 577 ---------------QHNSVSVVHFDTAKDQILAAGD------------------------------------------- 598 (1092)
Q Consensus 577 ---------------~~~~v~~~~~~~~~~~l~~~s~------------------------------------------- 598 (1092)
....-..++++|+...+++...
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 0000112688888888877532
Q ss_pred --CCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccc
Q 001363 599 --DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 663 (1092)
Q Consensus 599 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 663 (1092)
+|.|+.||+.+++.+.....+.. .....+...+.++++++.||.++.||..+++.+..++..
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CcceeEEEEECCCCCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 37899999999999988876532 333466677889999999999999999999988777644
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.06 E-value=5.6e-08 Score=105.78 Aligned_cols=239 Identities=12% Similarity=0.080 Sum_probs=153.6
Q ss_pred eec--CCCceEEEEEcCCCcEEEEecCCC--CeeEEeeeeeeecccccceeeEeeecC-CCCcEEEEEECCCCCEEEEEe
Q 001363 341 DFH--PVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 341 ~~s--pdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~~ 415 (1092)
+++ ++++++++.|..+++|.|+|+.+. +......++.-+ +... .......+..+||| .++++.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~-----------~~~~~g~s~Ph~~~~~pdG-i~Vs~~ 155 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEE-----------VKKVSGYSRLHTVHCGPDA-IYISAL 155 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHH-----------HHHHHCEEEEEEEEECSSC-EEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhh-----------cccccCCCcccceeECCCe-EEEEcC
Confidence 447 899998899999999999999755 212111110000 0000 11245668899999 666654
Q ss_pred CC------CEEEEEEccCCCcccceEEEcccc-cceeEEEEecCCCcEEEEEEe-------------------CCCcEEE
Q 001363 416 SK------HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG-------------------DDKTIKV 469 (1092)
Q Consensus 416 ~d------~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~-------------------~d~~i~v 469 (1092)
.+ +.|.+.|.++++.+.... ..... .--..+.|+|+++ .+++.. ...+|.+
T Consensus 156 g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 156 GNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp EETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred CCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 44 689999999987665321 11222 2233588899999 677764 3689999
Q ss_pred EECCCCceeEEEecC-C-cCeEEEeecccCCccEEEEEe------cCCeEEEEEcCCCCce--EE--ecCC---------
Q 001363 470 WDAVTGSRTYSFEGH-G-APVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGAR--VD--YDAP--------- 528 (1092)
Q Consensus 470 wd~~~~~~~~~~~~~-~-~~v~~i~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~--~~--~~~~--------- 528 (1092)
||+.+++.+.++... . .....+.|..++++++++.++ .+++|.+|..+.+... .. +...
T Consensus 233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence 999999888888653 1 234456665577888777766 4668887766542211 01 1110
Q ss_pred -------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC---CCeEEEEEeeccc-----------cCCceEEEEEc
Q 001363 529 -------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES---EGAIKRTYQGLQL-----------QHNSVSVVHFD 587 (1092)
Q Consensus 529 -------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~---~~~~~~~~~~~~~-----------~~~~v~~~~~~ 587 (1092)
......+.+|+||++|+++.. +.+.|.++|+. +.+.+..+..... -.+....++++
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS 389 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS 389 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence 234678999999999998764 35679999985 2345544433210 00135788999
Q ss_pred CCCCEEEEEe
Q 001363 588 TAKDQILAAG 597 (1092)
Q Consensus 588 ~~~~~l~~~s 597 (1092)
|||++++++.
T Consensus 390 pDGk~LyVaN 399 (462)
T 2ece_A 390 RDGRRVYVTN 399 (462)
T ss_dssp TTSSEEEEEC
T ss_pred CCCCEEEEEc
Confidence 9999999986
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.05 E-value=9.5e-09 Score=112.69 Aligned_cols=302 Identities=11% Similarity=0.049 Sum_probs=177.3
Q ss_pred eEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE
Q 001363 445 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD 524 (1092)
Q Consensus 445 ~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 524 (1092)
.+..+..++. +..++.++.|..|| .+++.+.....+...+.++.. ..++ .+..++.+ +..+|. +++....
T Consensus 23 ~~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~ 92 (330)
T 3hxj_A 23 SSPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWR 92 (330)
T ss_dssp CCCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGG
T ss_pred cCceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEE
Confidence 3445556776 66777888999999 888887665544444555554 3344 45555544 777775 4333333
Q ss_pred ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001363 525 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1092)
Q Consensus 525 ~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 604 (1092)
+...........+. + ..++.++. ++.|+.+|.. ++......... ..+.++...+++. ++.++.++.|..
T Consensus 93 ~~~~~~~~~~~~~~-~-~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~ 161 (330)
T 3hxj_A 93 FDTKKAIVSDFTIF-E-DILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYA 161 (330)
T ss_dssp SCC-----CCEEEE-T-TEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEE
T ss_pred EECCCCcccCceEE-C-CEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEE
Confidence 33222222223333 4 44555543 4569999988 77666555433 4455566666665 667778899999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCcccccccc
Q 001363 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 684 (1092)
+|.. ++......... ..+.++...+++.+.+ ++ +.+..++ .+++......
T Consensus 162 ~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~----------------------- 211 (330)
T 3hxj_A 162 INPD-GTEKWRFKTND--AITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFY----------------------- 211 (330)
T ss_dssp ECTT-SCEEEEEECSS--CCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEEC-----------------------
T ss_pred ECCC-CCEeEEEecCC--CceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEc-----------------------
Confidence 9998 87776665432 2356666666666443 33 5566665 3321111000
Q ss_pred CCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeec
Q 001363 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 764 (1092)
Q Consensus 685 ~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~ 764 (1092)
T Consensus 212 -------------------------------------------------------------------------------- 211 (330)
T 3hxj_A 212 -------------------------------------------------------------------------------- 211 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCC
Q 001363 765 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP 844 (1092)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~ 844 (1092)
. ....+.++++.++|.+.+...++.+..+|. +++.+..+.....
T Consensus 212 ~-----------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~ 255 (330)
T 3hxj_A 212 A-----------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKR 255 (330)
T ss_dssp C-----------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSC
T ss_pred c-----------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCC
Confidence 0 111233445555555555444566666653 4444444443333
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
.+.++.+.+ ++ .|.+++.+|.+..+|. +++.+..+......+.++...++|++. .++.+|.+++...+.
T Consensus 256 ~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 256 IESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLE 324 (330)
T ss_dssp CCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred ccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence 344556665 45 5666888889999996 677777666556667788887787655 478899998887765
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.02 E-value=7.4e-08 Score=108.83 Aligned_cols=345 Identities=11% Similarity=0.041 Sum_probs=199.1
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe----------cCCeEEEEEcCCCCceEE
Q 001363 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGKIKAWLYDSLGARVD 524 (1092)
Q Consensus 455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~ 524 (1092)
++.+.||+..|.++|+-+-+++.++.+......-. .-|-.+.....++..+ .+|. ....
T Consensus 15 ~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~----------~~~~ 83 (595)
T 1fwx_A 15 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGK----------RIHD 83 (595)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTC----------SSCC
T ss_pred EEEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCc----------eecc
Confidence 44688999999999999999999988863221000 0000000000000000 0010 0000
Q ss_pred ecCCCCceEEEEE---ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEE-c-CCCCEEEEEe--
Q 001363 525 YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG-- 597 (1092)
Q Consensus 525 ~~~~~~~i~~~~~---s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~s-- 597 (1092)
.+.. .-..+++ .+||++++.+.. .+..|.+.|+.+.++.+.+.-.. ......+++ + |+++++++++
T Consensus 84 -~gd~-hh~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~ 156 (595)
T 1fwx_A 84 -NGDL-HHVHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGED 156 (595)
T ss_dssp -CCCB-CCEEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECS
T ss_pred -cCCC-CccccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEeccc
Confidence 0000 1122333 248999998653 36679999999999888664322 245778887 5 9999999985
Q ss_pred ----------------CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 001363 598 ----------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 598 ----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
.++.+.+.|.++.+...++...+. ...++++|+|+++++.+.+... +..+....
T Consensus 157 ~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~~~i~~~~ 226 (595)
T 1fwx_A 157 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------GMTLPEMT 226 (595)
T ss_dssp CEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------CSSHHHHT
T ss_pred ccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------Ccchhhcc
Confidence 345799999999999998886542 4678999999999999876321 00000000
Q ss_pred cccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEE
Q 001363 662 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 741 (1092)
Q Consensus 662 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 741 (1092)
. .....+.+-.... .. .
T Consensus 227 ~--~~~d~v~V~~~~~-----------------------~~--------------------------------------~ 243 (595)
T 1fwx_A 227 A--AEMDHIVVFNIAE-----------------------IE--------------------------------------K 243 (595)
T ss_dssp C--CSEEEEEEEEHHH-----------------------HH--------------------------------------H
T ss_pred c--cccceEEEeeccc-----------------------ee--------------------------------------E
Confidence 0 0000011100000 00 0
Q ss_pred EecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCc-eeeecCCCCCCCCCeeEEEEecCCCEEEEE
Q 001363 742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSA 820 (1092)
Q Consensus 742 ~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~ 820 (1092)
+.++|+.... +.+.+.|....+ +.. +.... -.....++.++|||++++++
T Consensus 244 ~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~ 294 (595)
T 1fwx_A 244 AIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCVA 294 (595)
T ss_dssp HHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEEE
T ss_pred eccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEEe
Confidence 0111111111 223343322100 111 11111 12244578999999999988
Q ss_pred e--CCeEEEEEcCCce------------eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC----------c
Q 001363 821 S--GGVISLYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------S 876 (1092)
Q Consensus 821 s--dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----------~ 876 (1092)
+ +++|.++|+.+.+ ...... -......++|+| +|...++..-|++|.+||+.+ .
T Consensus 295 ~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~ 372 (595)
T 1fwx_A 295 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD 372 (595)
T ss_dssp CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred CCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence 7 5889999998763 223332 345678999999 776666777899999999987 4
Q ss_pred eeeEeeccccCCe-----EEEEEcCCCCEEEEEeC---CCc----------EEEEEcCCCcee
Q 001363 877 EVISKLEGHSKRV-----TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGIQ 921 (1092)
Q Consensus 877 ~~~~~l~~h~~~V-----~~l~~spdg~~l~s~s~---Dg~----------I~iwd~~~~~~~ 921 (1092)
+.+.++..|-.+- ..+.++|||++|+++.. |+. -.++|+++++..
T Consensus 373 ~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 373 PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred eeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 5677776664432 22356899999998753 543 188999765533
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.01 E-value=1.1e-08 Score=112.31 Aligned_cols=269 Identities=12% Similarity=0.059 Sum_probs=173.2
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d 417 (1092)
.+..+..+|. +..|+.++.|..|| .+++.+... ..+...+.++...++|.+.+ ++.+
T Consensus 23 ~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~-------------------~~~~~~~~~~~~~~~g~l~v-~t~~ 79 (330)
T 3hxj_A 23 SSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFF-------------------KSGEIIECRPSIGKDGTIYF-GSDK 79 (330)
T ss_dssp CCCEECTTSC--EECSSTTTTTEEEC-TTSCEEESS-------------------CGGGEEEECCEETTTTEECC-SSCE
T ss_pred cCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEE-------------------ecCCCcccceEEecCCcEEE-ecCc
Confidence 4556667776 45667788999999 888765431 11234456777777776444 4444
Q ss_pred CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccC
Q 001363 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1092)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 497 (1092)
|..+|. +++.+... ...........+. ++ .+..++.++.|..+|.. ++.......+...+.++.. .+
T Consensus 80 --l~~~d~-~g~~~~~~---~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~ 146 (330)
T 3hxj_A 80 --VYAINP-DGTEKWRF---DTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SE 146 (330)
T ss_dssp --EEEECC-CGGGGGGS---CC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CT
T ss_pred --EEEECC-CCcEEEEE---ECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cC
Confidence 888886 55443321 1122223333443 44 47778888999999988 8877777655555555554 33
Q ss_pred CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc
Q 001363 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1092)
Q Consensus 498 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1092)
++ .++.++.++.|..+|.. ++...........+.++.+.+++...+.. +.|+.+| .+++....+....
T Consensus 147 ~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~-- 214 (330)
T 3hxj_A 147 DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY-- 214 (330)
T ss_dssp TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS--
T ss_pred CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC--
Confidence 44 46678888999999988 66666665555567777787888765544 2399999 7777666555433
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCcee
Q 001363 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1092)
Q Consensus 578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 657 (1092)
..+.++...+++ .+.+++.++.+..+|. +++.+........ .+..+.+.+++ .|.+++.+|.+..++. +++..
T Consensus 215 -~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 215 -WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp -CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred -cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence 557777888776 4666777888888874 5666666654432 23455665555 5667888889999985 55555
Q ss_pred eecc
Q 001363 658 DAAG 661 (1092)
Q Consensus 658 ~~~~ 661 (1092)
....
T Consensus 288 ~~~~ 291 (330)
T 3hxj_A 288 WNFE 291 (330)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.96 E-value=7.9e-10 Score=122.74 Aligned_cols=191 Identities=8% Similarity=-0.023 Sum_probs=112.5
Q ss_pred CCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001363 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1092)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 486 (1092)
++..+++++.|+.|+.||..+|+.+- .+.. +.+.+..+..++. ++++++.|+.|+.||.++|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 67899999999999999999997654 3333 4566666677787 677788999999999999998877654322
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001363 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1092)
Q Consensus 487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1092)
.......... ++..+++++.++.+..||..+++....+..+. ...++|++..+++++. ++.|+.||..+|+
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTRE 151 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSSS
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCCC
Confidence 1111111111 33578888999999999999988877665443 2345678888888765 6779999999998
Q ss_pred EEEEEeeccccCCceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 567 IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 567 ~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
.+..+.... .....+.++. ..+++++.+|.++.||..+|+.+.....
T Consensus 152 ~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 152 LRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp CCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred EEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 776655322 1122233332 5678889999999999999999887764
No 243
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.94 E-value=0.00052 Score=86.43 Aligned_cols=609 Identities=9% Similarity=0.034 Sum_probs=304.6
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC----CCEEEE
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLGV 413 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd----g~~las 413 (1092)
+++++-.+| ++..|+..|.=.+|.+.....-...-+.+-| --..-++|..++.... ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEEE
Confidence 566666666 5777888777777777643210000000000 1123467777776431 235555
Q ss_pred Ee---CCCEEEEEEccCCCcccceEEEcccccceeEEEEec---CCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcC
Q 001363 414 AY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1092)
Q Consensus 414 ~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 487 (1092)
++ .+|.+++..-.-+-.......+.+ ...++.+.... .+. +|+.+..+.+ .|+.+. ++.+..+.. .
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~-~-- 467 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETEL-M-- 467 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECC-T--
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCccccccc-c--
Confidence 43 457788765432211111112222 23455555432 233 5665555555 455432 223333311 1
Q ss_pred eEEEeecccCCccEEEEEec---------CCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 488 VYSLCPHAKENIHFIFSISV---------DGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 488 v~~i~~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
.| ..+...|+++.. ...|++.+.........+..+. ..|...+.+ +.+++.+. .+.+
T Consensus 468 ----gf--~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-----g~~l 534 (1158)
T 3ei3_A 468 ----GF--VDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-----GRAL 534 (1158)
T ss_dssp ----TC--CSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-----TTEE
T ss_pred ----cc--cCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-----CCEE
Confidence 11 112223333321 2235666655444555555443 356655544 34555553 1236
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001363 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1092)
.++++..++.... .... -...|.|+++.|. +.++++|.. |++++|+++.+.+.+........ ....++.+
T Consensus 535 ~~fel~~~~L~~~-~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l 611 (1158)
T 3ei3_A 535 YYLQIHPQELRQI-SHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILM 611 (1158)
T ss_dssp EEEEEETTEEEEE-EEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEE
T ss_pred EEEEeeCCceeee-cccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEE
Confidence 6677665544332 2111 1367999998764 368888886 99999999998777765544321 12334433
Q ss_pred c--cCCCEEEEEeCCCeEEEEECC--CCceeee--cccccCceeeeeecC----------CCccccccccCC--------
Q 001363 631 N--KNGTLLAVIANENRIKILETP--ESNSVDA--AGVLSDNLRKLSVNP----------ISTVTGAGIANG-------- 686 (1092)
Q Consensus 631 s--~~~~~l~~~~~dg~i~iw~~~--~~~~~~~--~~~~~~~v~~~~~~~----------~~~~~~~~~~~~-------- 686 (1092)
. ....+|.+|-.||.+.-+.+. ++..... ..-...++.-..+.. ..+.+... ..+
T Consensus 612 ~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~-~~~~l~~s~l~ 690 (1158)
T 3ei3_A 612 TTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYS-SNHKLVFSNVN 690 (1158)
T ss_dssp EEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEE-SSSSEEEEEBS
T ss_pred EEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEE-cCCceEEeccC
Confidence 3 234678899999998766554 3322211 000011111111110 11111000 011
Q ss_pred ------ceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001363 687 ------SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 760 (1092)
Q Consensus 687 ------~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~ 760 (1092)
...|+....|+| ++ +..++.+++..++....-....+ .-...+..++++|+.+.++.+..+...
T Consensus 691 ~~~v~~~~~F~se~~~~g--~v-~~~~~~LrI~~i~~~~~~~~~~i-----pL~~Tprri~y~~~~~~~~v~~~~~~~-- 760 (1158)
T 3ei3_A 691 LKEVNYMCPLNSDGYPDS--LA-LANNSTLTIGTIDEIQKLHIRTV-----PLYESPRKICYQEVSQCFGVLSSRIEV-- 760 (1158)
T ss_dssp SSCCCEEEEECCSSSTTE--EE-EECSSCEEEEEECCSSSEEEEEE-----ECSSEEEEEEEEGGGTEEEEEEEEEEE--
T ss_pred hHHhceEeccCcccCCCc--EE-EEcCCceEEEEecccCCeeEEEE-----eCCCCceEEEEcCCCCEEEEEEEeccc--
Confidence 111222212222 22 22335577777643221111111 123577899999998877666543211
Q ss_pred EeecCC-----------------------------CcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE--
Q 001363 761 WRWPRN-----------------------------DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA-- 809 (1092)
Q Consensus 761 w~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~-- 809 (1092)
++.... ....-+.......+++.|+.+...+...++.. ...+.+++
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~---nE~~~sv~~v 837 (1158)
T 3ei3_A 761 QDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ---NEYALSLVSC 837 (1158)
T ss_dssp ECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT---TEEEEEEEEE
T ss_pred cccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC---CcceEEEEEE
Confidence 111000 00000111223457788888887776666653 33444444
Q ss_pred -EecC-CCEEEEEe-----------CCeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC
Q 001363 810 -LSKN-DAYLFSAS-----------GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 810 -~s~d-g~~l~~~s-----------dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
|..+ ..++++|. .|.|.+|++..++...... ...+.+++++-- +|++|| |- ..+|++|++..
T Consensus 838 ~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla-~i-g~~l~vy~l~~ 913 (1158)
T 3ei3_A 838 KLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLA-SI-NSTVRLYEWTT 913 (1158)
T ss_dssp CCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEE-EE-TTEEEEEEECT
T ss_pred EEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEE-Ec-CCEEEEEECCC
Confidence 3333 46888774 2569999987544322211 235678887754 454444 43 47899999986
Q ss_pred ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEe
Q 001363 876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 955 (1092)
Q Consensus 876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~ 955 (1092)
.+.+..-..+-..|..+.....+++++.|..-..|.+...+..+... ..+..-.. . .+++++.|-.++.++++-.
T Consensus 914 ~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~D~~-~---~~vta~~~ld~~t~l~aD~ 988 (1158)
T 3ei3_A 914 EKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNF-EEIARDFN-P---NWMSAVEILDDDNFLGAEN 988 (1158)
T ss_dssp TSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEE-EEEEECCS-C---BCEEEEEEEETTEEEEEET
T ss_pred CceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeE-EEEEeecc-c---ccEEEEEEEccCcEEEEcC
Confidence 65433111122223333333357899999888888887665432111 12221111 1 3689999987776666556
Q ss_pred CCcEEEEEcCCc-------eeeeeeccCC-CCCEEEEEE---ecC---------CCEEEEEECCCcEEEEEc
Q 001363 956 ETHLAIYEAEEL-------TCLKQWFPIS-SVPISQATF---SCD---------CRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 956 d~~i~lwd~~~~-------~~~~~~~~~h-~~~v~~l~f---s~d---------g~~l~t~~~Dg~i~vwd~ 1007 (1092)
++.+.++..... +.+.....-| ...|+++.- .+. ...++.++.+|+|.+.-.
T Consensus 989 ~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 989 AFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp TSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred CCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 788888876531 2222111112 556777652 222 234677888998887643
No 244
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.93 E-value=0.00015 Score=85.46 Aligned_cols=458 Identities=9% Similarity=-0.018 Sum_probs=230.3
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
-..+..++|++.+.+++.+-...+.|..++++....... ++...-..+..+|+.+.+..|+.
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~ly~ 100 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYW 100 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCEEEE
Confidence 346889999997776666656678888888876532110 12223357889999997666665
Q ss_pred E-eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEE-eCCCcEEEEECCCCceeEEEecCCcCeEEE
Q 001363 414 A-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1092)
Q Consensus 414 ~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 491 (1092)
+ ...+.|.+.++.+... +. .+...-.....+++.|.+.. ++++- +..+.|...+++...........-...+.+
T Consensus 101 ~d~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl 176 (619)
T 3s94_A 101 TDSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 176 (619)
T ss_dssp EETTTTEEEEEETTSCSC-EE--EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred EeCCCCEEEEEECCCCCE-EE--EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence 5 4568899999986432 21 12233445778999997664 33333 334677777765433322232334456778
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
++.+. ++.+.++-...+.|...|++.................+++..+ .++.+-. ..+.|...|..+++....+
T Consensus 177 ald~~-~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 177 TLDYE-EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGLREI 250 (619)
T ss_dssp EEETT-TTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCCEEC
T ss_pred EEEcc-CCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCcccEEE
Confidence 88543 3345555556678888888754433322212222345666544 5555432 2455888887776543322
Q ss_pred eec-----------c--cc---------CCceEEEEE-----------cCCC---------------CEEEEEeCCCcEE
Q 001363 572 QGL-----------Q--LQ---------HNSVSVVHF-----------DTAK---------------DQILAAGDDHVIK 603 (1092)
Q Consensus 572 ~~~-----------~--~~---------~~~v~~~~~-----------~~~~---------------~~l~~~s~dg~i~ 603 (1092)
... . +. .+....+++ .|.| .+|+.+ ..+.|+
T Consensus 251 ~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~ 329 (619)
T 3s94_A 251 HSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLR 329 (619)
T ss_dssp CSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEE
T ss_pred ecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceE
Confidence 110 0 00 000001111 1111 122222 234566
Q ss_pred EEECCCCceEE-EEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccc
Q 001363 604 IWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1092)
Q Consensus 604 iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (1092)
..++....... .+.. .....+..++|++.+..|..+ ...+.|+.++...................+++.+.
T Consensus 330 ~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~------ 402 (619)
T 3s94_A 330 RISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWV------ 402 (619)
T ss_dssp EEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT------
T ss_pred EEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecc------
Confidence 66665443211 1111 122345678898855555544 45788888887754332222222233344444421
Q ss_pred cccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecC--CeeE
Q 001363 682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHL 759 (1092)
Q Consensus 682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~ 759 (1092)
.+++..+-...+.|.+.+++... ...+. . ........+++.|....|+.+... +.|.
T Consensus 403 ---------------~~~lY~tD~~~~~I~v~~~~G~~---~~~l~-~--~~l~~P~~iavdp~~G~ly~tD~g~~~~I~ 461 (619)
T 3s94_A 403 ---------------ARNLYWTDTGTDRIEVTRLNGTM---RKILI-S--EDLEEPRAIVLDPMVGYMYWTDWGEIPKIE 461 (619)
T ss_dssp ---------------TTEEEEEETTTTEEEEEETTSCS---CEEEE-C--TTCCSEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred ---------------cCcEEEEeCCCCcEEEEeCCCCe---EEEEE-E--CCCCCeeeEEEEcCCCcEEEecCCCCCEEE
Confidence 23344444444555555544211 11111 0 123457789999864444444322 3333
Q ss_pred EEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeE
Q 001363 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTIL 837 (1092)
Q Consensus 760 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~ 837 (1092)
..+++.. . ..... . ..-.....++++++++.|..+. .+.|..+++.......
T Consensus 462 r~~~dG~-------~--------------~~~l~-~----~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~ 515 (619)
T 3s94_A 462 RAALDGS-------D--------------RVVLV-N----TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV 515 (619)
T ss_dssp EEETTSC-------S--------------CEEEE-C----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE
T ss_pred EEccCCC-------c--------------cEEEE-e----CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE
Confidence 3322211 0 00010 0 1234567899999888887776 3779889886443322
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 838 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 838 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
.+...-.....+++.. +.+..+-...+.|...|..+|
T Consensus 516 ~~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 516 LVEDKIPHIFGFTLLG--DYVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EEECCCCSSCCEEEET--TEEEEECTTSSCEEEEESSSC
T ss_pred EeccCCCCcEEEEEEC--CEEEEeecCCCeEEEEEcCCC
Confidence 2222222334555543 334443334456666666665
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.92 E-value=4.6e-10 Score=124.60 Aligned_cols=191 Identities=9% Similarity=0.052 Sum_probs=109.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC
Q 001363 855 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 934 (1092)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 934 (1092)
++..|++++.||.|+.||..+|+.+.++.. +.+.+..+.+++..+++++.|+.|+.||..+++..............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 456889999999999999999999988876 56666666778888888889999999999887643211111100000
Q ss_pred CCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEE
Q 001363 935 LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus 935 ~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1014 (1092)
.+..++.++..++.+.++.++.||..+|+.+..+.. +. ...++|++..|++++.|+.|+.||..+|+.+.
T Consensus 85 -----~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 85 -----ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp -----TCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred -----cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 011112344433336789999999999998766432 22 24567788899999999999999999999877
Q ss_pred eeccccccCCCCccccccceEEEECCC--CCCEEEEEeCCCcEEEEecCCCCCccccC
Q 001363 1015 RILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus 1015 ~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 1070 (1092)
++....+.. .+++++ -...+++++.||.|+.||....+..|...
T Consensus 155 ~~~~~~~~~------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 155 NATYFDYAA------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEEECC------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred eEecccccC------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 665222111 112210 01567888999999999998888888765
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.86 E-value=1.2e-06 Score=104.89 Aligned_cols=375 Identities=14% Similarity=0.137 Sum_probs=206.2
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCe-----------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----------~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 525 (1092)
.++.++.++.|..+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 46667778899999999999998875432211 11122 2357888899999999999999988766
Q ss_pred cCCCC----ceEEEEEccCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccc-----------------------
Q 001363 526 DAPGL----GCTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL----------------------- 576 (1092)
Q Consensus 526 ~~~~~----~i~~~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~----------------------- 576 (1092)
..... .+.+.-.-.++ .++++.... ..++.|+.+|..+|+.+-.+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred ccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 54211 11110011134 454443221 1257899999999999887753210
Q ss_pred -----cCCceEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEeCCCCC-------CCC
Q 001363 577 -----QHNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PEN 625 (1092)
Q Consensus 577 -----~~~~v~~~~~~~~~~~l~~~s~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~v 625 (1092)
+......+++.|+...++.++.++. |..+|..+|+.+...+...+. ...
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~ 302 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI 302 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence 0011124678888889988887763 999999999999888753221 111
Q ss_pred ceEEEccCCC---EEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccce
Q 001363 626 PRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 702 (1092)
Q Consensus 626 ~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 702 (1092)
....+..+|+ .+++++.+|.++++|..+++.+......... +...+.+ ..+..........+++.
T Consensus 303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~---------~~g~p~~~~~~~~~~~~-- 370 (668)
T 1kv9_A 303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDL---------ATGRPVEAPGVRYEKEP-- 370 (668)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECT---------TTCCEEECTTTTCSSSC--
T ss_pred EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-ccccccc---------ccCCccccccccccCCe--
Confidence 1122234665 6888999999999999999887554322210 0011110 00000000000000000
Q ss_pred eeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCcc
Q 001363 703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 782 (1092)
Q Consensus 703 s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 782 (1092)
.+..|.......-..++++|+...+++...+-...+ .... ..
T Consensus 371 ----------------------~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~-~~~~---------------~~ 412 (668)
T 1kv9_A 371 ----------------------IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVY-RNEG---------------KD 412 (668)
T ss_dssp ----------------------EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE-CCCG---------------GG
T ss_pred ----------------------eEECCCCccccCCCcceECCCCCEEEEeccccceEe-eeec---------------cc
Confidence 000111001111123678888777666555422211 1000 00
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE-EEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001363 783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860 (1092)
Q Consensus 783 ~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~-~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 860 (1092)
|....+. . .... + .+..++ ... +|.|..||..+++.+.+...+.. .....+.. .+.+++
T Consensus 413 ~~~~~~~--~--------~g~~-----~--~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t-~gg~vf 473 (668)
T 1kv9_A 413 FVTRKAF--N--------TAAG-----F--ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVF 473 (668)
T ss_dssp CCCCSSC--C--------CSSC-----G--GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEE
T ss_pred ccccccc--c--------cCcc-----c--cccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEe-CCCEEE
Confidence 1100000 0 0000 0 011111 122 47899999999998877654332 22233333 466888
Q ss_pred EEeCCCcEEEEEcCCceeeEeeccccCCe-EEEEEcCCCC-EEEEEe
Q 001363 861 IGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG 905 (1092)
Q Consensus 861 sg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~-~l~s~s 905 (1092)
+|+.||.++.||..+|+.+..+....+.. .-+.+..+|+ +++.++
T Consensus 474 ~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 474 QGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 89999999999999999998887543211 2244455776 444443
No 247
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.86 E-value=0.00053 Score=80.79 Aligned_cols=535 Identities=9% Similarity=-0.020 Sum_probs=275.8
Q ss_pred eEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEEcc
Q 001363 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYH 426 (1092)
Q Consensus 348 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~ 426 (1092)
+|+.+ ....|+..++.+........ + ..-..+..++|.+.+..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 34444 34778999988765332111 1 123468899999977776655 456889999987
Q ss_pred CCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEE-
Q 001363 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI- 505 (1092)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~- 505 (1092)
+... .. .+.........+++.+.+.. ++++-...+.|.+.+++.......+...-.....+++.|. +|.+.++-
T Consensus 68 g~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 6432 21 22222235678999877664 4556666788999997655432223233445678888654 33444443
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001363 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1092)
Q Consensus 506 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 585 (1092)
+..+.|...+++......... .......+++++++..|+.+-. +.+.|...|+..... ..+.... .....++
T Consensus 143 g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~gla 214 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLT 214 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEE
T ss_pred CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEE
Confidence 235678888877655444433 3456789999999888887753 356799999876544 3333322 3456777
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCCCCCCceE-EEccCCCEEEEEeCCCeEEEEECCCCce--eeeccc
Q 001363 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIANENRIKILETPESNS--VDAAGV 662 (1092)
Q Consensus 586 ~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~ 662 (1092)
+.. +..+++-...+.|...|..+++....+..... ....+ .+++..+. + .+.. ...++.+ +....
T Consensus 215 v~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~-~n~C----~~~ng~C~~~C~~~- 282 (628)
T 4a0p_A 215 QYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G-WNEC----ASSNGHCSHLCLAV- 282 (628)
T ss_dssp EET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C-CCTT----TTTGGGCSSEEEEE-
T ss_pred EEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c-ceEe----ccCCCCcchhhhcC-
Confidence 764 33334444578898899888776666543211 12233 22221110 0 0000 0000000 00000
Q ss_pred ccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEE
Q 001363 663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742 (1092)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 742 (1092)
....-. ..+|.+-.+.... .... .+ ...++.+. ...|+-..+..... ....++. .....+.+++|
T Consensus 283 ~~~~~~--C~C~~g~~l~~d~---~~C~----~~-~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~~~~ld~ 347 (628)
T 4a0p_A 283 PVGGFV--CGCPAHYSLNADN---RTCS----AP-TTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRNVRAIDY 347 (628)
T ss_dssp TTTEEE--EECSTTCEECTTS---SCEE----CC-SSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSCEEEEEE
T ss_pred CCCCee--EEcCCCcEecccC---CcCc----cc-cceeeeec-cceEEEEecccccC---ceEEEEe-hhcCCceEEEE
Confidence 000000 0111111110000 0000 11 12222222 23343333321110 0111111 12345778999
Q ss_pred ecCCcEEEEeec-CCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe
Q 001363 743 NNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 821 (1092)
Q Consensus 743 s~~g~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s 821 (1092)
.+....|+.+.. .+.|..++...... ..+.............+..+++...++.|..+.
T Consensus 348 d~~~~~iy~sD~~~~~I~r~~~~g~~~--------------------~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td 407 (628)
T 4a0p_A 348 DPLDKQLYWIDSRQNMIRKAQEDGSQG--------------------FTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTC 407 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC--------------------EEEEC--------CCCEEEEEEETTTTEEEEEE
T ss_pred ecCCCeEEEEecCcceEEEEEcCCCCc--------------------eEEEEcccccccccCCcceEEeeccCCeEEEEc
Confidence 887665655543 45666554322100 001000000000234578999999877776665
Q ss_pred --CCeEEEEEcCCceeeEEe-cCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEEcCCceeeEeeccccCCeEEEEEcC
Q 001363 822 --GGVISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKLEGHSKRVTGLVFSD 896 (1092)
Q Consensus 822 --dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp 896 (1092)
.+.|.+.++. |+....+ ........++++.|..+.++.+-.... .|...+++...........-.....|++.+
T Consensus 408 ~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~ 486 (628)
T 4a0p_A 408 EATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDS 486 (628)
T ss_dssp TTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred CCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeC
Confidence 4789999986 4444443 334467899999995555555543333 566666653332222232344578999999
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceeeee
Q 001363 897 ALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ 972 (1092)
Q Consensus 897 dg~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~~~ 972 (1092)
+++.|..+. ..+.|...+++..... .+.. +.. ....++++.. +.+..+ ...+.|...|..+|+....
T Consensus 487 ~~~~LYw~D~~~~~I~~~~~dG~~r~---~~~~--~~~---~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~ 555 (628)
T 4a0p_A 487 RLGKLFWADSDLRRIESSDLSGANRI---VLED--SNI---LQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTK 555 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCE---EEEC--SSC---SCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEE
T ss_pred CCCEEEEEeCCCCEEEEEeCCCCceE---EEEc--CCC---CCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEE
Confidence 876666554 4578999998764321 1211 111 1345666644 333333 2445677777666654433
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.86 E-value=1.1e-07 Score=107.39 Aligned_cols=235 Identities=9% Similarity=0.015 Sum_probs=159.1
Q ss_pred cCCCEEEEEe--CCeEEEEEcCCceeeEEecCC-CCCeEEEEE-c-CCCCCEEEEEe------------------CCCcE
Q 001363 812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM------------------DDSTI 868 (1092)
Q Consensus 812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~lasg~------------------~dg~v 868 (1092)
+||+++.+.. ++.|.+.|+.+.++...+.-. ......+++ + | +++++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 4899998876 477999999999988855433 246788888 5 8 788888884 34589
Q ss_pred EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q 001363 869 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--------------------------------------QI 910 (1092)
Q Consensus 869 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--------------------------------------~I 910 (1092)
.++|..+.+.+.++.--. ....++++|||+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999999888876322 356788999999999988653 35
Q ss_pred EEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE--eCCcEEEEEcCCce------------eeeeec
Q 001363 911 FVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT------------CLKQWF 974 (1092)
Q Consensus 911 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~------------~~~~~~ 974 (1092)
.|.|..+ +... ...+.... ...++.++|||++++++ .+++|.++|+.+.+ ......
T Consensus 257 ~VID~~~~~~~~~-~~~Ipvg~-------~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 257 KVVDGRKEASSLF-TRYIPIAN-------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp EEEECSGGGCCSS-EEEEEEES-------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred EEEeCcccCCcee-EEEEecCC-------CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 5666655 2110 11122211 35679999999999985 56789999999663 222222
Q ss_pred cCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC----------CceEEeeccccccCCCCccccccceEEEECCCCCC
Q 001363 975 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus 975 ~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1044 (1092)
-......++|++||...++..-|+.|.+||+.+ ...+.++.. .+.|.+ .-.++..+.+| |++
T Consensus 329 --vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh----~~~~~g~t~~~-DGk 400 (595)
T 1fwx_A 329 --LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGH----LKTVMGETLDA-TND 400 (595)
T ss_dssp --CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEE----EEETTTTSTTC-CSS
T ss_pred --CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-cccccc----ceeccceEeCC-CCC
Confidence 246788999999994445566899999999987 444545442 111111 11223345677 688
Q ss_pred EEEEEeCCC--cE-----------EEEecCCCC
Q 001363 1045 QFAVGLTNG--EV-----------YVIEPNEPG 1064 (1092)
Q Consensus 1045 ~l~~~~~dg--~v-----------~~w~~~~~~ 1064 (1092)
+|+++..-. .+ .++|++..+
T Consensus 401 ~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 401 WLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 888776532 23 788884333
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.86 E-value=6.9e-06 Score=86.40 Aligned_cols=224 Identities=12% Similarity=0.043 Sum_probs=143.7
Q ss_pred CcEEEEEECCCCCEEEEEe-CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 397 VSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
..+..++|++++..|..+. ..+.|..++..++.... .+.........+++.+++.. ++++....+.|.+++++..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 4578899999877666654 56789999998654211 22222246789999998664 4556666789999997654
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEec--CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
...............+++.+. ++.++++... .+.|..++++.................+++++++..|+.+.. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~-~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeC-CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 322222222245677888553 2333444333 468888888754433333233346788999999888877653 2
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1092)
.+.|..+|.........+.+. .....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~ 260 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIAL 260 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEEC
T ss_pred CCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecC
Confidence 567999998765544443321 334566654 45565554 56899999999999988886432 12357788888
Q ss_pred CCC
Q 001363 633 NGT 635 (1092)
Q Consensus 633 ~~~ 635 (1092)
++.
T Consensus 261 ~~~ 263 (267)
T 1npe_A 261 SQC 263 (267)
T ss_dssp SCC
T ss_pred ccC
Confidence 764
No 250
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.84 E-value=0.0011 Score=83.48 Aligned_cols=572 Identities=10% Similarity=0.091 Sum_probs=280.3
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEccCCCc-----ccceEEEcccccceeEEEEecC---CCcEEEEEEe---CCCcE
Q 001363 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG---DDKTI 467 (1092)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~---~d~~i 467 (1092)
.+++++-.+| +|..|+..|.=.+|.+..... +....++ ..-++|.+++.... +.. .+++++ .+|.+
T Consensus 329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL 405 (1158)
T 3ei3_A 329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSL 405 (1158)
T ss_dssp CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEE
T ss_pred ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeE
Confidence 3567776555 788888877777777764321 1222233 24468888887542 122 233332 56788
Q ss_pred EEEECCCC-ceeEEEec-CCcCeEEEeecc-cCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CceEEEEEcc-CC
Q 001363 468 KVWDAVTG-SRTYSFEG-HGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSA-NG 541 (1092)
Q Consensus 468 ~vwd~~~~-~~~~~~~~-~~~~v~~i~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~-dg 541 (1092)
++..-.-+ +.+..+.- .-..++.+.... +....+|+.+..+.+ +++.+.. +........+ .....++... .+
T Consensus 406 ~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~-e~veev~~~gf~~~~~TL~~~~l~~ 483 (1158)
T 3ei3_A 406 RIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNG-EEVEETELMGFVDDQQTFFCGNVAH 483 (1158)
T ss_dssp EEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEET-TEEEEECCTTCCSSSCEEEEEEETT
T ss_pred EEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeC-CcccccccccccCCCCcEEEEEcCC
Confidence 88752211 11122210 113344443221 123457777776666 4554422 1222221111 1111111111 12
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--EEeCC
Q 001363 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG 619 (1092)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~ 619 (1092)
..++=... ..|++.+...+..+..+.... ...|...+.+. .+++.++ .+.+.++.+..++... .....
T Consensus 484 ~~ivQVt~-----~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~ 553 (1158)
T 3ei3_A 484 QQLIQITS-----ASVRLVSQEPKALVSEWKEPQ--AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEME 553 (1158)
T ss_dssp TEEEEEES-----SCEEEEESSSCCEEEEECCTT--CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECS
T ss_pred CeEEEEec-----CEEEEEECCCCeEEEEEECCC--CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCC
Confidence 23433332 227777766555555554333 23566666543 4666665 5778888877654332 22222
Q ss_pred CCCCCCceEEEccC------CCEEEEEeC-CCeEEEEECCCCceeeeccccc-CceeeeeecCCCccccccccCCceeec
Q 001363 620 GGLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVN 691 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1092)
..|.|+++.|. +.++++|.. |++++|+++++.+.+....-.. ....++.+. .+
T Consensus 554 ---~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~---------------~~- 614 (1158)
T 3ei3_A 554 ---HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMT---------------TF- 614 (1158)
T ss_dssp ---SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEE---------------EE-
T ss_pred ---CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEE---------------Ee-
Confidence 35888888763 479999997 9999999998765443221111 111222221 01
Q ss_pred CCCCCCCccceeeccccccceecccc--ccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcC
Q 001363 692 EDPKEDVKPEISVEAENKSEVEKPLF--ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 769 (1092)
Q Consensus 692 ~~~s~d~~~l~s~~~d~~i~lw~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~ 769 (1092)
....++..|-.||.+..+.++. +.........+ ...++.-..+...|..-+.+.++.-..+|.-+
T Consensus 615 ----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L----G~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~----- 681 (1158)
T 3ei3_A 615 ----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL----GTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN----- 681 (1158)
T ss_dssp ----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC----CSSCCEEEEEESSSCEEEEEESSSCEEEEESS-----
T ss_pred ----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc----CCCceEEEEEeeCCceeEEEECCCCEEEEEcC-----
Confidence 1124456666666654444332 11111111111 11233333333333322222223222222211
Q ss_pred cCcccccccCCccccCCCCCceeeecCCCCCCCCCee-EEEEecC--CCEEEEEeCCeEEEEEcCCcee--eEEecCCCC
Q 001363 770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALSKN--DAYLFSASGGVISLYIVMTFKT--ILTIMPPSP 844 (1092)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~-~~~~s~d--g~~l~~~sdg~i~iwd~~~~~~--~~~~~~~~~ 844 (1092)
+. +....+ ....+. ...|+.. ..-++..+++.++|..+.+... ++++. -..
T Consensus 682 ------------------~~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~ 737 (1158)
T 3ei3_A 682 ------------------HK-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP-LYE 737 (1158)
T ss_dssp ------------------SS-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE-CSS
T ss_pred ------------------Cc-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe-CCC
Confidence 00 111111 111222 2234332 2345555566688877654322 22222 234
Q ss_pred CeEEEEEcCCCCCEEEEEeCC-------------------------------------------------CcEEEEEcCC
Q 001363 845 TATSLAFNPHDNNVIAIGMDD-------------------------------------------------STILIYNARS 875 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~d-------------------------------------------------g~v~iwd~~~ 875 (1092)
.+..++++| ..+.++++..+ +.|++.|-.+
T Consensus 738 Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t 816 (1158)
T 3ei3_A 738 SPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHT 816 (1158)
T ss_dssp EEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTT
T ss_pred CceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCC
Confidence 667788887 55544443311 2467777777
Q ss_pred ceeeEeecc-ccCCeEEEE---EcCC-CCEEEEEe----------CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001363 876 SEVISKLEG-HSKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 876 ~~~~~~l~~-h~~~V~~l~---~spd-g~~l~s~s----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
.+.+..+.- ....+.+++ |..+ ..+++.|. ..|.|.++++..++.. .+...+- .+.+.
T Consensus 817 ~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~---lv~~~~v----~g~v~ 889 (1158)
T 3ei3_A 817 FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ---TVAEKEV----KGAVY 889 (1158)
T ss_dssp CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE---EEEEEEE----SSCEE
T ss_pred CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE---EEEEEEc----CCcCE
Confidence 766554432 222344444 4333 46788775 3478999999854322 2221111 12566
Q ss_pred EEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcC--CCceEEeecc
Q 001363 941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS--NLEVQCRILS 1018 (1092)
Q Consensus 941 ~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~--~~~~~~~~~~ 1018 (1092)
+++-- +| +|+++-..+|++|++...+.++. ...+-..|..+.....|.+++.|..-.+|.+.... .+++.-..
T Consensus 890 al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~-~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a-- 964 (1158)
T 3ei3_A 890 SMVEF-NG-KLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA-- 964 (1158)
T ss_dssp EEEEE-TT-EEEEEETTEEEEEEECTTSCEEE-EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE--
T ss_pred EEeee-CC-EEEEEcCCEEEEEECCCCceEEE-EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE--
Confidence 66533 23 67777789999999986654431 11111123333343457788888877777765543 33332111
Q ss_pred ccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001363 1019 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1019 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
..+. +.+..++.+- |...++.+..+|.|.+...+..
T Consensus 965 ~D~~-------~~~vta~~~l--d~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 965 RDFN-------PNWMSAVEIL--DDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp ECCS-------CBCEEEEEEE--ETTEEEEEETTSEEEEEEECTT
T ss_pred eecc-------cccEEEEEEE--ccCcEEEEcCCCcEEEEecCCC
Confidence 1222 2334455554 2368999999999999988653
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.84 E-value=1e-05 Score=85.15 Aligned_cols=258 Identities=11% Similarity=0.012 Sum_probs=156.4
Q ss_pred CCEEEEEeCCCEEEEEEccCCCccc--ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 485 (1092)
|.+|+.+.. +.|+.+++.+..... ....+......+..++|++++.. ++++....+.|.+++...+.....+....
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 78 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL 78 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence 345655543 468889987654211 01112222345789999997764 55566667899999987665433333323
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.....+++.+. ++.+.++....+.|.+++++.................++++|++..|+.+.... ..+.|+.++....
T Consensus 79 ~~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~ 156 (267)
T 1npe_A 79 GSPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT 156 (267)
T ss_dssp CCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred CCccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC
Confidence 45678888543 234555666678999999876544333333334668899999877766654321 1356888887543
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
. ...+.... ......+++++++..|+.+. ..+.|.++|.........+... .....++.. ++.++++...++
T Consensus 157 ~-~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d-~~~lyva~~~~~ 229 (267)
T 1npe_A 157 N-RRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKTN 229 (267)
T ss_dssp C-CEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTTT
T ss_pred C-cEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe-CCEEEEEECCCC
Confidence 2 22332111 24678899999887776654 5678999999765544444321 223456654 344444444568
Q ss_pred eEEEEECCCCceeeeccccc-CceeeeeecCCC
Q 001363 645 RIKILETPESNSVDAAGVLS-DNLRKLSVNPIS 676 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 676 (1092)
.|..++..+++.+..+.... .....+++.|..
T Consensus 230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred eEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 99999999887776665332 234555555443
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.83 E-value=2.2e-06 Score=102.78 Aligned_cols=194 Identities=13% Similarity=0.143 Sum_probs=129.1
Q ss_pred CCeEEEEEcCCceeeEEecCCC-------------------------------CCeEEEEEcCCCCCEEEEEeCCCc---
Q 001363 822 GGVISLYIVMTFKTILTIMPPS-------------------------------PTATSLAFNPHDNNVIAIGMDDST--- 867 (1092)
Q Consensus 822 dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~d~~~lasg~~dg~--- 867 (1092)
++.|..+|..+|+.+.++.... .....++++| +..+++.++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 3667778887777776654210 0112478888 6778888887763
Q ss_pred ----------------EEEEEcCCceeeEeecc--cc-------CCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCc
Q 001363 868 ----------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG 919 (1092)
Q Consensus 868 ----------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg~---~l~s~s~Dg~I~iwd~~~~~ 919 (1092)
|..+|..+|+.+..++. |. .+.....+..+|+ .++.++.+|.+.++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 99999999999887764 32 2333333334675 68889999999999999988
Q ss_pred eeeeeeeec---------CCCCc--------C------CC-----CCceEEEEccCCCEEEEE-----------------
Q 001363 920 IQTCRSLQT---------PDGVM--------T------LA-----PSETHIQFHKDQTRFLLV----------------- 954 (1092)
Q Consensus 920 ~~~~~~~~~---------~~~~~--------~------~~-----~~v~~l~~s~dg~~la~~----------------- 954 (1092)
......... ..+.. . .. ..-..++++|+..++.+.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 652211100 00000 0 00 001237888887776651
Q ss_pred --------------------eCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEE
Q 001363 955 --------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus 955 --------------------~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1014 (1092)
.++.|..||..+|+.+-+... ..++....+...|.++++++.||.++.||..+|+.+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 126799999999998765432 2334444556678899999999999999999999998
Q ss_pred eecc
Q 001363 1015 RILS 1018 (1092)
Q Consensus 1015 ~~~~ 1018 (1092)
++..
T Consensus 494 ~~~~ 497 (668)
T 1kv9_A 494 QFEA 497 (668)
T ss_dssp EEEC
T ss_pred EecC
Confidence 8874
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.79 E-value=5.9e-06 Score=96.51 Aligned_cols=167 Identities=14% Similarity=0.176 Sum_probs=106.8
Q ss_pred EEEEcCCCCCEEEEEeCC----------------CcEEEEEcCCceeeEeecc--cc--------CCeEEEEEc-CCC--
Q 001363 848 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL-- 898 (1092)
Q Consensus 848 ~l~~s~~d~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-pdg-- 898 (1092)
.+++.+ ...+++.++.+ +.|.-+|..+|+.+..++. |. .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 356667 55677777665 3899999999999877764 21 1221 2222 567
Q ss_pred -CEEEEEeCCCcEEEEEcCCCceeeeeeeec----------CCCCc----------CC-----------CCCceEEEEcc
Q 001363 899 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVM----------TL-----------APSETHIQFHK 946 (1092)
Q Consensus 899 -~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~----------~~~~~----------~~-----------~~~v~~l~~s~ 946 (1092)
+.++.++.+|.+.+.|..+++..-...... ..+.. .. ...-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567788999999999999987654322110 00000 00 00113567888
Q ss_pred CCCEEEEE----------------------------------------eCCcEEEEEcCCceeeeeeccCCCCCEEEEEE
Q 001363 947 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF 986 (1092)
Q Consensus 947 dg~~la~~----------------------------------------~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~f 986 (1092)
+..++.+. ..+.|.-||+.+|+.+-+...+ .++..-.+
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~ 480 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM 480 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence 77766541 2256888898888877654322 22222223
Q ss_pred ecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 987 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 987 s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
...|..++.++.||.++.||..+|+.+.++..
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 44667888899999999999999999988863
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.75 E-value=1.2e-06 Score=89.82 Aligned_cols=200 Identities=12% Similarity=0.076 Sum_probs=138.5
Q ss_pred CeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceee
Q 001363 804 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 879 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 879 (1092)
....++|++|+.++++.+ ++.|+++|+.+++.+..+.-.. .....+++. ++++.++...++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 457899999876655554 3789999999999998875322 233456665 3455566667889999999999999
Q ss_pred EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCc
Q 001363 880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 958 (1092)
Q Consensus 880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~ 958 (1092)
.++..-... ...+++||+.|+.+..++.|.++|..+.+......+....... ..+..+.|. +|...+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~---~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV---IRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc---ccceeEEEE-CCEEEEecCCCCe
Confidence 888632121 2446678888877777889999999987654433322211111 135678888 77555544 5689
Q ss_pred EEEEEcCCceeeeeeccC-C-----------CCCEEEEEEecCCCEEE-EEECCCcEEEEEcCCCc
Q 001363 959 LAIYEAEELTCLKQWFPI-S-----------SVPISQATFSCDCRMVF-TSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus 959 i~lwd~~~~~~~~~~~~~-h-----------~~~v~~l~fs~dg~~l~-t~~~Dg~i~vwd~~~~~ 1011 (1092)
|.+.|..+++.+..+..+ - ......++|+|+++.++ ++...+.+.+-++....
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 999999999988776432 0 13568999999987555 55567888888876643
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.72 E-value=2.3e-05 Score=91.73 Aligned_cols=378 Identities=11% Similarity=0.002 Sum_probs=204.0
Q ss_pred EEEEEeC-CCcEEEEEC-CCCceeEEEecCCc-Ce----------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceE
Q 001363 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGA-PV----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 523 (1092)
Q Consensus 457 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~~~~-~v----------~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 523 (1092)
.++.++. ++.|..+|. ++|+.+.++..... .+ ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3556666 889999999 89999887753321 00 11122 23578888899999999999998887
Q ss_pred EecCCCC----ceEE-EEEccCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeecccc-------------------
Q 001363 524 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 577 (1092)
Q Consensus 524 ~~~~~~~----~i~~-~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~------------------- 577 (1092)
....... .+.+ ..+ .++ .++++.... ..++.|+.+|..+|+.+-.+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 1111 111 144 445443211 11567999999999998776543200
Q ss_pred ---------------CC-ceEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEeCCCCC---
Q 001363 578 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL--- 622 (1092)
Q Consensus 578 ---------------~~-~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 622 (1092)
.. ....+++.++...++.++.+ +.|..+|..+|+.+...+...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00 00235667777777776642 35999999999999888654211
Q ss_pred ----CCCceEEEccCCC---EEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCC
Q 001363 623 ----PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 695 (1092)
Q Consensus 623 ----~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (1092)
....-+....+|+ .++.++.+|.+.++|..+++.+.........-....+.+
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~--------------------- 356 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL--------------------- 356 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence 1111122224674 677888899999999999987765432110000000000
Q ss_pred CCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccc
Q 001363 696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 775 (1092)
Q Consensus 696 ~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~ 775 (1092)
..++.+...... . .+.....+..|.......-..++++|+...+++...+....++..+..
T Consensus 357 ~~g~p~~~~~~~---------~-~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~--------- 417 (571)
T 2ad6_A 357 KTGTPVRDPEFA---------T-RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP--------- 417 (571)
T ss_dssp TTCSEEECGGGC---------C-CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC---------
T ss_pred cCCceecccccC---------C-CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc---------
Confidence 000000000000 0 000000001111001111135688999888888877644444332110
Q ss_pred cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCC
Q 001363 776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 855 (1092)
Q Consensus 776 ~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d 855 (1092)
...+. . .-.....+..+|.+. ....++.+..||..+++.+.++.... .+....+.. .
T Consensus 418 ---------~~~g~-~---------~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~ 474 (571)
T 2ad6_A 418 ---------YRAGQ-F---------FVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-K 474 (571)
T ss_dssp ---------CCTTS-C---------CCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-T
T ss_pred ---------cccCC-c---------cccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-C
Confidence 00011 0 000011122233321 00124789999999998887765322 222222232 3
Q ss_pred CCEEEEEeCCCcEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEE
Q 001363 856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 903 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s 903 (1092)
+.++++++.||.|+.||..+|+.+.++...... -.-+.+..+|+.++.
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 457777999999999999999999888743221 122345567765553
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.70 E-value=3.9e-05 Score=89.89 Aligned_cols=379 Identities=12% Similarity=0.075 Sum_probs=202.7
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEecCCcCe---------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001363 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 528 (1092)
Q Consensus 458 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v---------~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 528 (1092)
++.++.++.|..+|.++|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445553449999999999998876443211 11122 2357888899999999999999988765443
Q ss_pred CC----ceE-EEEEcc---CCC-EEEEEecCC--CCceeEEEEeCCCCeEEEEEeecccc--------------------
Q 001363 529 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------- 577 (1092)
Q Consensus 529 ~~----~i~-~~~~s~---dg~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------- 577 (1092)
.. .+. ...+.. +|+ .++++.... ..++.|+-+|..+|+.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111112 234 455543211 12678999999999987665431100
Q ss_pred ------------------CCceEEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceEEE
Q 001363 578 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT 615 (1092)
Q Consensus 578 ------------------~~~v~~~~~~~~~~~l~~~s~--------------------d----g~i~iwd~~~~~~~~~ 615 (1092)
...-..+++.|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 000023567777788887663 2 5899999999999988
Q ss_pred EeCCCCC----CCCc-eEEEc---cCCC---EEEEEeCCCeEEEEECCCCceeeecccccC--ceeeeeecCCCcccccc
Q 001363 616 IDAGGGL----PENP-RICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG 682 (1092)
Q Consensus 616 ~~~~~~~----~~v~-~v~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~ 682 (1092)
++...+. ..+. -+.+. .+|+ .++.++.+|.++++|..+++.+........ ....+...
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~--------- 377 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK--------- 377 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT---------
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccccc---------
Confidence 8653221 0111 12222 4674 788899999999999999988766543221 11111000
Q ss_pred ccCCceeecCCCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEe
Q 001363 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 762 (1092)
Q Consensus 683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~ 762 (1092)
.+.........|.. +. . .+ +.....+..|.......-..++++|+...+++...+-...++.
T Consensus 378 --~g~p~~~~~~~~~~--~~-~-~~------------~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~ 439 (582)
T 1flg_A 378 --TGRPVEREGQRPPL--PE-P-GQ------------KHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWT 439 (582)
T ss_dssp --TCCEEECTTCSCCC--CC-T-TC------------SSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEE
T ss_pred --CCCEeEccccCCcc--cc-c-cc------------cCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeec
Confidence 00000000000000 00 0 00 0000001111111111122467888877777766553333332
Q ss_pred ecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC
Q 001363 763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 842 (1092)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~ 842 (1092)
.+.. ...| ....-..+...|++. ..+|.|..||+.+++.+.+....
T Consensus 440 ~~~~------------------~~~g------------~~~~g~~~~~~p~~~----~~~G~l~A~D~~tG~~~W~~~~~ 485 (582)
T 1flg_A 440 EEVS------------------YTKG------------SAYLGMGFRIKRMYD----DHVGSLRAMDPVSGKVVWEHKEH 485 (582)
T ss_dssp CCCC------------------CCTT------------SCCCCEEEEEEESCS----SCSEEEEEECTTTCCEEEEEEES
T ss_pred cccc------------------ccCC------------CceeccceeecCCCC----CCcceEEEEECCCCCEEEEecCC
Confidence 1110 0011 111111122223310 12578999999999988766533
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCe-EEEEEcCCCCEEEE
Q 001363 843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILVS 903 (1092)
Q Consensus 843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~l~s 903 (1092)
.. +..-.+.. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..||+..+.
T Consensus 486 ~~-~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 486 LP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp SC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CC-CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 22 21111112 34578889999999999999999998887543322 12566678864443
No 257
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.69 E-value=3.1e-06 Score=86.81 Aligned_cols=217 Identities=9% Similarity=-0.009 Sum_probs=144.0
Q ss_pred ceeeEEecCCCC--CeEEEEEcCCCCCEEEEEeC--CCcEEEEEcCCceeeEeecccc-CCeEEEEEcCCCCEE-EEEeC
Q 001363 833 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNIL-VSSGG 906 (1092)
Q Consensus 833 ~~~~~~~~~~~~--~i~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l-~s~s~ 906 (1092)
.+.+.++. |.. ....++|++ ++.+.++.+. ++.|.++|+.+++.+..+.-.. .-...+++. ++.| ++.-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34555664 443 368999999 6655554443 5799999999999888865211 122345554 4444 44556
Q ss_pred CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCceeeeeeccCC----CCCE
Q 001363 907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPI 981 (1092)
Q Consensus 907 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~~~~~~~~h----~~~v 981 (1092)
++.+.++|..+.+.... +... .. ....+++||+.+.++ .+++|.++|..+.+.+..+..+. -..+
T Consensus 85 ~~~v~viD~~t~~v~~~--i~~g-~~-------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKN--FTHQ-MK-------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp CSEEEEEETTTTEEEEE--EECC-SS-------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CCEEEEEECCCCcEEEE--EECC-CC-------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 88999999998764432 2221 01 124477788877774 45789999999988877765432 1246
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCC---CCccccccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001363 982 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus 982 ~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w 1058 (1092)
..+.|. ||+..+....++.|.+-|..+++...++......+. ..+....-+..++++|+....++++...+.|.+-
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 788888 786555555678999999999999999875321110 0011123446789999655678888889999999
Q ss_pred ecCCCC
Q 001363 1059 EPNEPG 1064 (1092)
Q Consensus 1059 ~~~~~~ 1064 (1092)
++.+..
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 986543
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.67 E-value=2.6e-05 Score=91.10 Aligned_cols=383 Identities=11% Similarity=0.038 Sum_probs=202.3
Q ss_pred EEEEEeC-CCcEEEEEC-CCCceeEEEecCCcC-----------eEEEeecccC--CccEEEEEecCCeEEEEEcCCCCc
Q 001363 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKE--NIHFIFSISVDGKIKAWLYDSLGA 521 (1092)
Q Consensus 457 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~~~~~-----------v~~i~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~ 521 (1092)
.++.++. ++.|.-+|. .+|+.+.++...... ...+++.+.. ...+++.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 3666666 889999999 899999877543211 0122331111 112378888999999999999988
Q ss_pred eEEecCCCC----ceEE-EEEccCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccccC----------------
Q 001363 522 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQH---------------- 578 (1092)
Q Consensus 522 ~~~~~~~~~----~i~~-~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~---------------- 578 (1092)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|..+|+.+-.+.......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 876544321 1111 111 244 444443211 125789999999999987765432000
Q ss_pred ------------------Cce-EEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEeCCCCCC
Q 001363 579 ------------------NSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 579 ------------------~~v-~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
..+ ..+++.++...++.++.+ +.|..+|..+|+.+..++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 000 134566777888887765 379999999999998887543211
Q ss_pred ----CCce-EEEc---cCC---CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecC
Q 001363 624 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 692 (1092)
Q Consensus 624 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1092)
.... +.+. .+| ..++.++.+|.++++|..+++.+.........-+.-.+. ...+...+..
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~---------~~~g~p~~~~ 372 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD---------LKTGQPVRDP 372 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC---------TTTCCEEECG
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc---------cCCCceeecc
Confidence 0111 2222 467 567778899999999999998776543211000000000 0000000000
Q ss_pred CCCCCCccceeeccccccceeccccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCc
Q 001363 693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772 (1092)
Q Consensus 693 ~~s~d~~~l~s~~~d~~i~lw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~ 772 (1092)
...+ .+.....+..|.......-..++++|+...+++...+....++-.+..
T Consensus 373 ~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~------ 424 (599)
T 1w6s_A 373 EYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP------ 424 (599)
T ss_dssp GGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC------
T ss_pred ccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc------
Confidence 0000 000000111111111122235788999888877776633322211000
Q ss_pred ccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEc
Q 001363 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 852 (1092)
Q Consensus 773 ~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 852 (1092)
...+.. .-..-..+..+|.+........|.+..||+.+++.+.+.......... .+.
T Consensus 425 ------------~~~g~~----------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~~~ 481 (599)
T 1w6s_A 425 ------------YKAGQF----------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-TMA 481 (599)
T ss_dssp ------------CCTTSC----------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-CEE
T ss_pred ------------ccCCcc----------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-ceE
Confidence 000110 000000011122110000002477899999999887776422111111 122
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCceeeEeeccccCCe-EEEEEcCCCCEEE
Q 001363 853 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV 902 (1092)
Q Consensus 853 ~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~l~ 902 (1092)
. .+.+++.++.||.++.||.++|+.+.+++-..+.+ .-+.+..||+..+
T Consensus 482 t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 482 T-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp E-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred e-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence 2 35577789999999999999999998886433221 2245556776433
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.66 E-value=1.3e-05 Score=93.92 Aligned_cols=167 Identities=9% Similarity=0.067 Sum_probs=107.5
Q ss_pred EEEEcCCCCCEEEEEeCC----------------CcEEEEEcCCceeeEeecc--cc--------CCeEEEEEcCCCC--
Q 001363 848 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFSDALN-- 899 (1092)
Q Consensus 848 ~l~~s~~d~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~spdg~-- 899 (1092)
.+++.+ +...++.+..+ +.|..+|..+|+.+..++. |. .++. +....+|+
T Consensus 239 ~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~ 316 (571)
T 2ad6_A 239 WYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMT 316 (571)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEE
T ss_pred eEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEE
Confidence 356777 45566666532 3599999999998877653 21 2221 22234774
Q ss_pred -EEEEEeCCCcEEEEEcCCCceeeeeeeec-C---------CCCc-------------------CCC--CCceEEEEccC
Q 001363 900 -ILVSSGGDAQIFVWDVDGWGIQTCRSLQT-P---------DGVM-------------------TLA--PSETHIQFHKD 947 (1092)
Q Consensus 900 -~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-~---------~~~~-------------------~~~--~~v~~l~~s~d 947 (1092)
.++.++.+|.+.+.|..+++..-...+.. . .+.. ... ..-..++|+|+
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 396 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence 57788899999999999987544322111 0 0000 000 00135788998
Q ss_pred CCEEEEE-e-------------------------------------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecC
Q 001363 948 QTRFLLV-H-------------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCD 989 (1092)
Q Consensus 948 g~~la~~-~-------------------------------------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~d 989 (1092)
..++.+. . ++.|..||..+++.+.+...+ ..+.+..+...
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~ 474 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTK 474 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEET
T ss_pred CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEEC
Confidence 8877763 2 367999999999887664322 23333334445
Q ss_pred CCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 990 CRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 990 g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
+..+++++.||.|+.||..+|+.+.++..
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 66788899999999999999999988874
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.63 E-value=5.6e-05 Score=88.50 Aligned_cols=167 Identities=14% Similarity=0.160 Sum_probs=106.8
Q ss_pred EEEEcCCCCCEEEEEeC--------------------C----CcEEEEEcCCceeeEeecc--cc--------CCeEEEE
Q 001363 848 SLAFNPHDNNVIAIGMD--------------------D----STILIYNARSSEVISKLEG--HS--------KRVTGLV 893 (1092)
Q Consensus 848 ~l~~s~~d~~~lasg~~--------------------d----g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~ 893 (1092)
.++++| +..+++.+.. | +.|.-+|..+|+.+..++. |. .++. +.
T Consensus 250 ~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~ 327 (582)
T 1flg_A 250 SASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FD 327 (582)
T ss_dssp CCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EE
T ss_pred CceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Ee
Confidence 467777 5567766663 2 5899999999999887753 32 1221 12
Q ss_pred Ec-CCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeec------------------CCCCc-----------------C
Q 001363 894 FS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT------------------PDGVM-----------------T 934 (1092)
Q Consensus 894 ~s-pdg~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~------------------~~~~~-----------------~ 934 (1092)
.. .+|+ .++.++.+|.++++|..+++..-...... ..... .
T Consensus 328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~ 407 (582)
T 1flg_A 328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP 407 (582)
T ss_dssp EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred eecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence 21 4674 78889999999999999987553222110 00000 0
Q ss_pred CC--CCceEEEEccCCCEEEE-Ee---------------------------------CCcEEEEEcCCceeeeeeccCCC
Q 001363 935 LA--PSETHIQFHKDQTRFLL-VH---------------------------------ETHLAIYEAEELTCLKQWFPISS 978 (1092)
Q Consensus 935 ~~--~~v~~l~~s~dg~~la~-~~---------------------------------d~~i~lwd~~~~~~~~~~~~~h~ 978 (1092)
.. ..-..++++|+..++.+ .. ++.|.-||+.+|+.+-+...+
T Consensus 408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-- 485 (582)
T 1flg_A 408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-- 485 (582)
T ss_dssp TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--
T ss_pred CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--
Confidence 00 00124677877665554 21 467999999999887654322
Q ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 979 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 979 ~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
.++..-.....|.++++++.||.++.||..+|+.+.++..
T Consensus 486 ~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 486 LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 2222222333566888899999999999999999998874
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.58 E-value=6.3e-06 Score=83.16 Aligned_cols=186 Identities=13% Similarity=0.065 Sum_probs=130.0
Q ss_pred eeEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcCe-EEEeecccCCccEEEEEecCCeEEEEEcCCCC
Q 001363 444 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 520 (1092)
Q Consensus 444 v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 520 (1092)
...+.|+ ++. ++++.+.+| .|+++|+++|+.+.++....... ..+++ .+ +.+.+..-.++.+.++|..+.+
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eC-CEEEEEEeeCCEEEEEECccCc
Confidence 4778898 664 667777666 89999999999998886433221 22443 22 2445555568999999999999
Q ss_pred ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEeC
Q 001363 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 521 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
.+..+...... ..+++|++.|+... +...|.++|..+.+.+..+..... ....++.+.+. +|...+..-.
T Consensus 119 ~~~ti~~~~eG---~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 119 QVRSFNYDGEG---WGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp EEEEEECSSCC---CCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EEEEEECCCCc---eEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 88877654422 34457888887763 256799999999999888765320 11234556776 6654444447
Q ss_pred CCcEEEEECCCCceEEEEeCCCC----------CCCCceEEEccCCCEEEEEeCC
Q 001363 599 DHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIANE 643 (1092)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~d 643 (1092)
++.|.+.|..+++.+..+...+- ....+.+||+|+++.|.+.+..
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 88999999999999999876421 1234789999998888877763
No 262
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.53 E-value=0.006 Score=74.65 Aligned_cols=571 Identities=13% Similarity=0.077 Sum_probs=299.1
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
...|.++.-..+|...+ |+.+| +..||-.+ ...... . -......|.++....+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~lWi--gT~~G-L~ryDG~~---~~~~~~-----~----------~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWI--GSNKG-LFSYDGYS---TQQHFT-----Y----------GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSCEEE--EESSC-EEEECSSC---EEECSC-----T----------TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCCEEE--EECCC-ccccCCCc---eEEEEc-----c----------CCCCCceEEEEEEcCCC-cEEE
Confidence 34799999999997444 44555 55666321 111000 0 00123568888877766 5556
Q ss_pred EeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-----cCCcCe
Q 001363 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPV 488 (1092)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v 488 (1092)
|+.+| +..||..++..... .......|.++.. .+|. |..++.+ -+..+|..+++.. .+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~~---~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQP---ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECCC---SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEECc---ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 66666 78999887532110 0112234776654 4554 4444544 6888998776543 331 112456
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecC----CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
.++.. +.++.+.+ ++.+| +..++..+...... ... ....|.++....++..|..+.. +-+..+|..
T Consensus 149 ~~i~~--d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIR--TKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS 219 (758)
T ss_dssp EEEEE--CTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred EEEEE--cCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence 66655 33444444 55544 66677655432211 111 1224778888777775555542 138889988
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-----CCCCCceEEEccCCCEEE
Q 001363 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~ 638 (1092)
+++........ ...|.++....++... .|+.+ -+.+++..++.......... ....|.++....+|. |.
T Consensus 220 ~~~~~~~~~l~---~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 293 (758)
T 3ott_A 220 TGQIKQTEAFH---NNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IW 293 (758)
T ss_dssp TTEEEEEEEEE---EEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EE
T ss_pred CCeEEeccCCC---CCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EE
Confidence 77653322111 2468888887777644 45544 58888887765433221110 112356666666665 44
Q ss_pred EEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceeccccc
Q 001363 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 718 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~~~~~ 718 (1092)
+|+..| +.++.... ..... ....
T Consensus 294 iGT~~G-l~~~~~~~--~~~~~-----------------------------------------------------~~~~- 316 (758)
T 3ott_A 294 LGTDYG-ISLSRYNS--ALQFI-----------------------------------------------------PISQ- 316 (758)
T ss_dssp EEESSS-EEEECCCC---CEEE-----------------------------------------------------EHHH-
T ss_pred EEeCCc-ccccccCC--ceeEE-----------------------------------------------------eccc-
Confidence 455555 43332111 00000 0000
Q ss_pred cCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCC
Q 001363 719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798 (1092)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 798 (1092)
.........|.++....+|...+.+ .+| +..++...... .....+...... ..+
T Consensus 317 ---------~~~~~~~~~v~~i~~D~~g~lWiGt-~~G-l~~~~~~~~~~---------~~~~~~~~~~~~----~~l-- 370 (758)
T 3ott_A 317 ---------ITGTGDGNQFYSLFRDSKGFYWFGG-ANG-LIRFTDPAGER---------HDAIWYRMGDKT----YPL-- 370 (758)
T ss_dssp ---------HSCSCCCCBEEEEEECTTCCEEEEE-TTE-EEEESCTTSSC---------CCCEEECTTCSS----SCC--
T ss_pred ---------CCCCCCCceEEEEEEcCCCCEEEee-CCc-ceeeccccccc---------ceeEEeccCCcC----CCC--
Confidence 0000022357777777778755544 455 33333221100 000111100000 001
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe--cC----CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 001363 799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHDNNVIAIGMDDSTILIYN 872 (1092)
Q Consensus 799 ~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd 872 (1092)
....|.++.-.++|++.+.. ++-+..||..+++...-. .. ....|.++...+ ++. |-.|+..+-+.++|
T Consensus 371 --~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 371 --SHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVD 445 (758)
T ss_dssp --SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEE
T ss_pred --CCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEc
Confidence 23568888888888876644 667999998877654321 11 224578888876 554 55577766688888
Q ss_pred cCCc-----eee---Eeec---c-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001363 873 ARSS-----EVI---SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 940 (1092)
Q Consensus 873 ~~~~-----~~~---~~l~---~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1092)
..+. ... ..+. + ....|.++...++|++.+.++..+-|..+|..+++... +.. .... ....+.
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~---~~~-~~~~-~~~~~~ 520 (758)
T 3ott_A 446 KHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK---LFA-DELT-GEKSPN 520 (758)
T ss_dssp HHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE---ECT-TTSC-GGGCEE
T ss_pred cccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE---ecC-CCcC-CCcccc
Confidence 6531 111 1111 1 12358999999999877644444558889988755332 111 1100 012477
Q ss_pred EEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccC-CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccc
Q 001363 941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus 941 ~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
++....+|.+.+.+. +.+..|+..++....-...+ ....|.++... +|. |..++..| +..+|..+.+... +.
T Consensus 521 ~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~-~~-- 593 (758)
T 3ott_A 521 YLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQ-QN-- 593 (758)
T ss_dssp EEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEEE-C---
T ss_pred eEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeEE-ec--
Confidence 888888998887654 56888887665432210111 13567888764 665 44455555 7788888776542 11
Q ss_pred cccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1020 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1020 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
++.. .+. -++...+ ...|..|+.+|-+ .++..
T Consensus 594 --~~~~----~~~-~~~~~~~--~G~l~fG~~~Gl~-~f~p~ 625 (758)
T 3ott_A 594 --MTNK----RFT-SLLFDPK--EDCVYLGGADGFG-ISHSN 625 (758)
T ss_dssp ---CCC----CCS-EEEEETT--TTEEEEECBSEEE-EEEC-
T ss_pred --CCCC----cee-eeEEECC--CCcEEEecCCceE-EEChh
Confidence 1111 122 1222233 3678888888754 45554
No 263
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.51 E-value=1.4e-05 Score=97.51 Aligned_cols=248 Identities=9% Similarity=-0.010 Sum_probs=133.6
Q ss_pred CceEEeec-CCCceEEEEEcCCC----cEEEEecCCC-CeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCC
Q 001363 336 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1092)
Q Consensus 336 ~V~~v~~s-pdg~~llasg~~dg----~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 409 (1092)
.+...+|| |||++++.+.+.+| +|+++|+.+| +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 67889999 99996555544443 4999999998 63311 0 10 1134688999999
Q ss_pred EEEEEeCC-----CEEEEEEccCCCcccceEEEc-ccccceeEEEEecCCCcEEEEEEe-CCCcEEEEECCCCc-ee--E
Q 001363 410 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y 479 (1092)
Q Consensus 410 ~las~~~d-----~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~-~d~~i~vwd~~~~~-~~--~ 479 (1092)
.|+....+ ..|.++++.++...... .+. ........+.|||||+++++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99887654 36888888776422111 222 223346678999999963333322 23468888988762 22 3
Q ss_pred EE-ecCCcCeEEEeecccCCccEEEEEecC--C--eEEEEEcCCCCceEE-ecCCCC--ceEEEEEccCCCEEEEEecCC
Q 001363 480 SF-EGHGAPVYSLCPHAKENIHFIFSISVD--G--KIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 480 ~~-~~~~~~v~~i~~~~~~~~~~l~s~~~d--g--~i~vwd~~~~~~~~~-~~~~~~--~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
.+ ........++.|+ .++.+++....+ + .|..+++.+...... +..+.. .+..+ ++++..|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~--~~~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESI--AVRSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEE--EECSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEE--EEECCEEEEEEE-e
Confidence 33 2334444555432 133344444443 2 466666654222112 222222 33444 445666665543 2
Q ss_pred CCceeEEEEeC-------CCCeEEEEEeeccccCCceEEEEE----cCCCCEE-EEEeCC---CcEEEEECCCCce
Q 001363 552 EGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGDD---HVIKIWDMNKVQL 612 (1092)
Q Consensus 552 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l-~~~s~d---g~i~iwd~~~~~~ 612 (1092)
++...|+++++ .+++....+.... ...+..+.+ ++++..+ ++.+.. +.++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34667888886 4443123332111 112233322 3455444 443322 4577788877764
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.51 E-value=7.1e-06 Score=82.78 Aligned_cols=184 Identities=12% Similarity=0.109 Sum_probs=125.4
Q ss_pred eeEEEEecCCCEEEEEe-CC--eEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeE
Q 001363 805 VPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 880 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s-dg--~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 880 (1092)
...+.|+ ++.++.+.+ +| .|+++|+.+++.+..+.-.... .-.+++. ++++.+....++.+.+||..+.+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence 4688898 666666555 44 7999999999999887644322 2335554 34555555668999999999999999
Q ss_pred eeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcE
Q 001363 881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 959 (1092)
Q Consensus 881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i 959 (1092)
++..-. ....+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.|. +|++.+.. .++.|
T Consensus 122 ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~I 194 (262)
T 3nol_A 122 SFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNKI 194 (262)
T ss_dssp EEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCeE
Confidence 887422 223444678877776667889999999876554333321 11110 134557776 77665554 56789
Q ss_pred EEEEcCCceeeeeeccC---------C--CCCEEEEEEecCCCEEEEEEC
Q 001363 960 AIYEAEELTCLKQWFPI---------S--SVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 960 ~lwd~~~~~~~~~~~~~---------h--~~~v~~l~fs~dg~~l~t~~~ 998 (1092)
.+.|..+|+.+..+-.+ + ..-...++|+|+++.|++.+.
T Consensus 195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999988775432 0 235688999999888877764
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.48 E-value=7.7e-05 Score=80.82 Aligned_cols=268 Identities=10% Similarity=0.033 Sum_probs=149.0
Q ss_pred ecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeee--eeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK--VWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
.+.+.-....+++|+++|+ ++.++..++.|..||..++..... ... .+....|..... .........+..+++.+
T Consensus 13 ~~~g~~~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~p~gi~~~~ 89 (322)
T 2fp8_A 13 LIEAPSYAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDF-AYASPYWNKAFCENSTD-AEKRPLCGRTYDISYNL 89 (322)
T ss_dssp EEECSSSCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEE-EESCTTCCHHHHTTCCC-GGGHHHHCCEEEEEEET
T ss_pred ecCCccCCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEE-ecccccccccccccccc-hhccccCCCCceEEEcC
Confidence 3444334678899999998 566777889999999877653311 000 000000000000 00000113578899998
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCCcccceE-EEcc-cccceeEEEEec-CCCcEEEEEEeC-----------------CC
Q 001363 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQL-EIDA-HVGNVNDLAFSA-PCKQISVITCGD-----------------DK 465 (1092)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~-~~~~-h~~~v~~~~~s~-d~~~l~l~s~~~-----------------d~ 465 (1092)
+|+ |.++...+.|..+|..++.. .... ...+ .......+++.+ +|. +.++... ++
T Consensus 90 ~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 90 QNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp TTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred CCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCc
Confidence 554 55554455588888776532 1111 1111 113467899999 887 5554322 36
Q ss_pred cEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEE-EEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEccCCC
Q 001363 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGR 542 (1092)
Q Consensus 466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~ 542 (1092)
.|..||..+++....... ....+.++++ +++.+|+ +-+..+.|.++++.... ....+....+ ...+++.++|+
T Consensus 166 ~v~~~d~~~~~~~~~~~~-~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 166 RLIKYDPSTKETTLLLKE-LHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH 241 (322)
T ss_dssp EEEEEETTTTEEEEEEEE-ESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC
T ss_pred eEEEEeCCCCEEEEeccC-CccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC
Confidence 789999877764332222 2234567774 4666554 44567899999987532 1111111222 67899999998
Q ss_pred EEEEEecCC------CCceeEEEEeCCCCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001363 543 RLFSCGTSK------EGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 543 ~l~~~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
..++..... ...+.|..+|.. ++.+..+...... ...+..+++ .++..+++....+.|.++++..
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 766654210 013568889874 7777766643210 134566666 3444444444677888888753
No 266
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.47 E-value=3.9e-05 Score=77.32 Aligned_cols=186 Identities=10% Similarity=0.110 Sum_probs=128.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001363 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1092)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 475 (1092)
..-...+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. ........++++. +.+..-.++.+.+||.++.
T Consensus 54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTT
T ss_pred ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcC
Confidence 3445778887 4666677788889999999999887754 332 2333223445555 4445667899999999999
Q ss_pred ceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CC---ceEEEEEccCCCEEEEEecC
Q 001363 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GL---GCTRMAYSANGRRLFSCGTS 550 (1092)
Q Consensus 476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~---~i~~~~~s~dg~~l~~~~~~ 550 (1092)
+.+.++..... -..++. |+..|+.+..++.|.++|..+.+....+... .. .+..+.+. +|+ |++...
T Consensus 127 ~~~~ti~~~~e-GwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw- 198 (268)
T 3nok_A 127 QRERTTRYSGE-GWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW- 198 (268)
T ss_dssp EEEEEEECSSC-CCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET-
T ss_pred cEEEEEeCCCc-eeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC-
Confidence 99999975332 234443 4567777777999999999988876655432 22 34556666 775 444432
Q ss_pred CCCceeEEEEeCCCCeEEEEEeeccc----------cCCceEEEEEcCCCCEEEEEeC
Q 001363 551 KEGESFLVEWNESEGAIKRTYQGLQL----------QHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
....|.+.|+.+|+.+..+..... .....+.++++|+++.|++.+.
T Consensus 199 --~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 --HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp --TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred --CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 245799999999999988775311 1246789999999887777664
No 267
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.47 E-value=3.8e-05 Score=83.31 Aligned_cols=244 Identities=10% Similarity=0.001 Sum_probs=147.8
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEc-----------------ccccceeEEEEec-CCC
Q 001363 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-----------------AHVGNVNDLAFSA-PCK 454 (1092)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-----------------~h~~~v~~~~~s~-d~~ 454 (1092)
.+.-.....++|.++|+++.++..++.|..|+..+++. ....... .....+..+++.+ +++
T Consensus 15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~ 93 (322)
T 2fp8_A 15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ 93 (322)
T ss_dssp ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence 33334566789999999888888889999999876532 1111000 0123578899998 665
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeEEEec-----CCcCeEEEeecccC-CccEEEEEec-----------------CCeE
Q 001363 455 QISVITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKE-NIHFIFSISV-----------------DGKI 511 (1092)
Q Consensus 455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~i~~~~~~-~~~~l~s~~~-----------------dg~i 511 (1092)
|+.+...+.|..+|..+++. ..+.. .......+++ .+ +|.+.++... +|.|
T Consensus 94 ---l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 94 ---LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTV--DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp ---EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEE--CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred ---EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEE--ecCCCEEEEECCcccccccccceehcccCCCceE
Confidence 44444445588899776542 22221 1123566777 44 5556665432 3668
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCC
Q 001363 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
..+|..+........ .......++++++|+.|+.+.. ..+.|+.++..... ....+.... + ...+++.++
T Consensus 168 ~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~ 239 (322)
T 2fp8_A 168 IKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNAD 239 (322)
T ss_dssp EEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTT
T ss_pred EEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCC
Confidence 888776554322211 1123456899999997776643 24569999887521 112222222 3 778999999
Q ss_pred CCEEEEEeC----------CCcEEEEECCCCceEEEEeCCCC--CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001363 590 KDQILAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1092)
Q Consensus 590 ~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 653 (1092)
|+..++... .+.|..+|. .++.+..+....+ ...+..+++ .+++++++...++.|..+++..
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 986666544 467888887 4777777765432 234566666 4566666555678899988764
No 268
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.47 E-value=4.4e-06 Score=84.16 Aligned_cols=183 Identities=9% Similarity=0.080 Sum_probs=124.4
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCC-CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEe
Q 001363 804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 881 (1092)
-...+.|+. +.++.+.+ +|.|+++|+++++.+..+ -... ..-.+++. ++++.+....++.+.+||..+.+.+.+
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 346788873 44444444 588999999999988887 2222 22346665 455666667789999999999999998
Q ss_pred eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEE
Q 001363 882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 960 (1092)
Q Consensus 882 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~ 960 (1092)
+..- ..-..++ +|++.|+.+..++.|.++|..+.+......+....... ..+..+.|. +|++.+.. .++.|.
T Consensus 132 i~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 132 TRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp EECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred EeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCeEE
Confidence 8742 2223344 67888888777899999999987755533332211111 135667777 77655554 567899
Q ss_pred EEEcCCceeeeeeccC------------CCCCEEEEEEecCCCEEEEEE
Q 001363 961 IYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 961 lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
+.|..+|+.+..+-.+ -..-...++++|+++.|++.+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999987765322 123568899999876666555
No 269
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.46 E-value=0.00046 Score=74.58 Aligned_cols=234 Identities=9% Similarity=0.038 Sum_probs=133.0
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee
Q 001363 802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 878 (1092)
...+.++.+.+ +..++++..+.|.. ....|+.-.... .+...+..+++.+ ++.+++++ .+|.|.. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence 44678899986 55666665664433 222233322222 2334577888876 66666655 4564432 2222322
Q ss_pred e-EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCC
Q 001363 879 I-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957 (1092)
Q Consensus 879 ~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~ 957 (1092)
= ....++...+..+++.+++.+++.+...+..+-+|-.... ...+.... . ..+..+++++++++++++.++
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t---W~~~~~~~--~---~~~~~~~~~~~g~~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA---WEPHNRTT--S---RRLHNMGFTPDGRLWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS---CEEEECCS--S---SCEEEEEECTTSCEEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc---eeECCCCC--C---CccceeEECCCCCEEEEeCCc
Confidence 1 1223455678999999998888766444333333321111 11222211 1 257899999999988888888
Q ss_pred cEEEEEcCCceeeeeeccC---CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccce
Q 001363 958 HLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus 958 ~i~lwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
.+++.+...|+.-.....+ +...+.++.+.+++..++++ .+|.| ++..+.|+.-..+......+. .++
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~~-- 296 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NFY-- 296 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CCC--
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----CeE--
Confidence 8877653434443332212 23468899999888877755 57776 566677755544431111111 244
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEEe
Q 001363 1035 AIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus 1035 ~~~~~p~d~~~l~~~~~dg~v~~w~ 1059 (1092)
++.|.+ +..+++++.+|.|.-++
T Consensus 297 ~v~~~~--~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 297 KILFFS--PDQGFILGQKGILLRYV 319 (327)
T ss_dssp EEEEEE--TTEEEEECSTTEEEEEC
T ss_pred EEEEEC--CCceEEEcCCceEEEEc
Confidence 455543 35677888899776654
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.44 E-value=0.0001 Score=79.12 Aligned_cols=228 Identities=14% Similarity=0.113 Sum_probs=138.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-CC-cEEEEECCC
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK-TIKVWDAVT 474 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~-~i~vwd~~~ 474 (1092)
.....++|+++|+++++-..++.|..||..++. ... + ........+++.++|+ ++++... ++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 456789999999977776678899999987632 211 1 2234688999999998 4554433 32 477778788
Q ss_pred CceeEEEec-CCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-e-------c--CCCCceEEEEEccCCCE
Q 001363 475 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR 543 (1092)
Q Consensus 475 ~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~dg~~ 543 (1092)
++....... .......++.. .++..+++...++.|.++|......... . . ..-.....+ ++|++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 875433221 11222344432 2334455554688888888765321111 0 0 111133445 889988
Q ss_pred EEEEecCCCCceeEEEEeCCC-CeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 001363 544 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1092)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1092)
|+.+.. ..+.|+.++... ++. ...+.. . .....+++.++|+.+++....+.|.+++.. ++.........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~-~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVE-Q---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEE-S---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEec-c---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 877653 356799999864 332 112211 1 245668899999877776678899999975 65533222222
Q ss_pred CCCCCceEEEc---cCCCEEEEEeCC
Q 001363 621 GLPENPRICFN---KNGTLLAVIANE 643 (1092)
Q Consensus 621 ~~~~v~~v~~s---~~~~~l~~~~~d 643 (1092)
......+++|. |+++.|++.+..
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccCCceEEEEecccCCCCEEEEECCC
Confidence 23456889998 888877777654
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.43 E-value=1e-05 Score=97.37 Aligned_cols=277 Identities=10% Similarity=0.040 Sum_probs=156.1
Q ss_pred EEeecC-CCceEEEEEcCCC-----------cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECC
Q 001363 339 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1092)
Q Consensus 339 ~v~~sp-dg~~llasg~~dg-----------~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp 406 (1092)
++++.| +|+ +++.|+.+. .+.+||..+++-.... .....+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc----------------ccCCCCCCccccccCCC
Confidence 567777 787 777776432 5788888877533210 01122333445678889
Q ss_pred CCCEEEEEeC-CCEEEEEEccCCCcccceEEEcccccc-eeEEEEecCCCcEEEEEEe-CC-----CcEEEEECCCCcee
Q 001363 407 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRT 478 (1092)
Q Consensus 407 dg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~d~~~l~l~s~~-~d-----~~i~vwd~~~~~~~ 478 (1092)
+|+.+++|+. +..+.+||..+++-.. ...+ +..+ -.+++..++|+ +++.|+ .+ ..+.+||..+++..
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeE-CCCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 9999999984 4579999998763221 1111 1111 13455667888 777777 44 57999999887643
Q ss_pred EEEecC-CcCeE----EEeecccCCccEEEEEecCC---------eEEEEEcCCCCceEEecCC---------CCceEEE
Q 001363 479 YSFEGH-GAPVY----SLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRM 535 (1092)
Q Consensus 479 ~~~~~~-~~~v~----~i~~~~~~~~~~l~s~~~dg---------~i~vwd~~~~~~~~~~~~~---------~~~i~~~ 535 (1092)
.. ... ..+.. ...+ ..++..++.++.+| .+..||..+.......... ...-.++
T Consensus 328 ~~-~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 328 SL-PNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EE-TTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred eC-CCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 32 100 00000 0011 12445556665554 4567887765533221111 1122344
Q ss_pred EEc-cCCCEEEEEecCCC----Cce---eEEEEeCCCCeEEEEE--eeccccCCceEEEEEcCCCCEEEEEeCC------
Q 001363 536 AYS-ANGRRLFSCGTSKE----GES---FLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD------ 599 (1092)
Q Consensus 536 ~~s-~dg~~l~~~~~~~~----~~~---~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~d------ 599 (1092)
.+. .+++.++.++.+.. ... .+.+||..+....... .... ...-.+++..|+++.++.|+.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~ 482 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFE 482 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcC
Confidence 444 36777777764321 011 6888998877654433 1111 1223445667899999998754
Q ss_pred -----CcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001363 600 -----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1092)
Q Consensus 600 -----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1092)
..+.+||..+.+....-.............+.|+|+.++.|+.
T Consensus 483 ~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 483 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999988765432222211112234556789999999885
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.41 E-value=0.00079 Score=73.37 Aligned_cols=249 Identities=11% Similarity=-0.012 Sum_probs=154.5
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 413 (1092)
.+..+|.+..+++. ++++ ....|+..++........ +. ....+..++|.+.+..|..
T Consensus 33 ~d~~~C~~~~~~~~-ll~~--~~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEPV-LLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCCE-EEEE--CBSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCce-eEee--cccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEE
Confidence 34667888777553 4444 235688888766543321 22 3345889999987666665
Q ss_pred E-eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEe
Q 001363 414 A-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1092)
Q Consensus 414 ~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~ 492 (1092)
+ ...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.+++.......+.........++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 5 456789999988754221 12222234578999986664 455666678999999775543333333345567888
Q ss_pred ecccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001363 493 PHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1092)
+.+. ++.++++-... +.|...+++...........-.....++++|++..|+.+-. +.+.|..+|.........+
T Consensus 166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 8653 34455555555 78888888765444433333446789999998888877643 3567999998754333333
Q ss_pred eeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001363 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
.... .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus 242 ~~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 242 SQGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 456677773 34444445567788888876776666554
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.40 E-value=0.00016 Score=73.52 Aligned_cols=207 Identities=7% Similarity=-0.005 Sum_probs=134.6
Q ss_pred eecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC
Q 001363 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1092)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd 407 (1092)
+.|.|-.+++..++|+|++..|.++...++.|...|.. |+.+.... +.+ ....-.|++.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~ 80 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGD 80 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECST
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCC
Confidence 46777777999999999887788888888999999998 77665422 222 256788999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCCcccceEEEc------ccccceeEEEEecCCCcEEEEEEeCCC--cEEEEEC-CCCcee
Q 001363 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDA-VTGSRT 478 (1092)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~------~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~-~~~~~~ 478 (1092)
+.++++.-.++.+.++++.....+....... ........++|+|+++. |+++.... .|..|+- ..+..+
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCC
T ss_pred CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCce
Confidence 9877776567889999987654322111111 12345689999999985 33333333 4555541 112222
Q ss_pred EEEe-------cCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CceEEEEEccCCC
Q 001363 479 YSFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGR 542 (1092)
Q Consensus 479 ~~~~-------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~dg~ 542 (1092)
..+. .+...+.+++++|. .+++++.....+.+.++|.... .+..+.... .....++|.++|+
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred eeecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 2221 12345678888876 4578888888888999987644 333332221 2567899999998
Q ss_pred EEEEEecCCCCceeEEEEeC
Q 001363 543 RLFSCGTSKEGESFLVEWNE 562 (1092)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~ 562 (1092)
..++ +. .+.++.+..
T Consensus 237 lyIv-sE----~n~~y~f~~ 251 (255)
T 3qqz_A 237 IYIV-SE----PNRFYRFTP 251 (255)
T ss_dssp EEEE-ET----TTEEEEEEC
T ss_pred EEEE-cC----CceEEEEEe
Confidence 5555 32 335666654
No 274
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.40 E-value=0.00014 Score=78.13 Aligned_cols=231 Identities=12% Similarity=0.084 Sum_probs=137.0
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC-C-cEEEEEcCCceee
Q 001363 803 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-S-TILIYNARSSEVI 879 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-g-~v~iwd~~~~~~~ 879 (1092)
.....++++++|+++++.. ++.|..||.... ....+. .......+++++ +++++++.... + .|..++..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4567899999999766654 688999998753 333332 335688999999 78766655433 2 4777787777653
Q ss_pred Eeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee---ee--cCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 880 SKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ--TPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 880 ~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~---~~--~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
.... ........++..+++..+++-..++.|.++|..++....... +. ...+.. .....+ ++|++.|.+
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEE
Confidence 3221 112223455666666556655568888888876542111000 00 011111 123455 899987776
Q ss_pred E--eCCcEEEEEcCC-cee--eeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCcc
Q 001363 954 V--HETHLAIYEAEE-LTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028 (1092)
Q Consensus 954 ~--~d~~i~lwd~~~-~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1028 (1092)
+ ..+.|..|++.. +.. ...+.. ......+++++||+++++....+.|.+++.. |+........ .+
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--~~----- 253 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--QG----- 253 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--GT-----
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--cc-----
Confidence 4 457899999874 332 111111 1345678999999987777777899999975 6553211100 11
Q ss_pred ccccceEEEEC---CCCCCEEEEEeCCC
Q 001363 1029 LHVYPHAIAAH---PLKPTQFAVGLTNG 1053 (1092)
Q Consensus 1029 ~~v~~~~~~~~---p~d~~~l~~~~~dg 1053 (1092)
.-.+.+++|. | |+..|.+++..+
T Consensus 254 -~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 254 -VIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp -CTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred -cCCceEEEEecccC-CCCEEEEECCCC
Confidence 1236678898 6 455565555443
No 275
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.36 E-value=0.00015 Score=72.44 Aligned_cols=188 Identities=13% Similarity=0.116 Sum_probs=125.4
Q ss_pred CCCcEEEEEECCCCCEEEEEeCC--CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001363 395 PGVSVNRVVWSPDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1092)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 472 (1092)
...-...+.|++ +.+..+.+.+ ..|+.+|+.+|+.++.. .+..+ ........+++. +.+..-.++.+.++|.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~~---~fgeGi~~~~~~-ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPPP---YFGAGIVAWRDR-LIQLTWRNHEGFVYDL 92 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCTT---CCEEEEEEETTE-EEEEESSSSEEEEEET
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCCC---cceeEEEEeCCE-EEEEEeeCCEEEEEEC
Confidence 345677899986 5556666654 48999999999876643 22222 222333334554 4445567899999999
Q ss_pred CCCceeEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-----CceEEEEEccCCCEEEEE
Q 001363 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----LGCTRMAYSANGRRLFSC 547 (1092)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~s~dg~~l~~~ 547 (1092)
++.+.+.++...... ..++. ++..|+.+..++.|.++|..+.+....+.... ..+..+.+. +|+.. +.
T Consensus 93 ~tl~~~~ti~~~~~G-wglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly-an 165 (243)
T 3mbr_X 93 ATLTPRARFRYPGEG-WALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL-AN 165 (243)
T ss_dssp TTTEEEEEEECSSCC-CEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE-EE
T ss_pred CcCcEEEEEeCCCCc-eEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE-EE
Confidence 999999999754332 34443 44556666678899999999888766554321 234455554 66544 43
Q ss_pred ecCCCCceeEEEEeCCCCeEEEEEeeccc----------cCCceEEEEEcCCCCEEEEEeC
Q 001363 548 GTSKEGESFLVEWNESEGAIKRTYQGLQL----------QHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
... ...|.+.|+.+|+.+..+..... .....+.++++|+++.|++.+.
T Consensus 166 vw~---s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 166 VWL---TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ETT---TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ECC---CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 321 44699999999999988874321 1246789999999888888774
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.36 E-value=6.7e-05 Score=90.13 Aligned_cols=121 Identities=12% Similarity=0.185 Sum_probs=76.5
Q ss_pred EEEEcc-CCCEEEEEecCCC-------CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEE
Q 001363 534 RMAYSA-NGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI 604 (1092)
Q Consensus 534 ~~~~s~-dg~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~i 604 (1092)
..++.+ +++.++.++.+.+ ....+.+||+.+++..........+.....++++..++..+++|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456677 8888888775432 123689999998765432222111112334567788999888887 4568999
Q ss_pred EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe-CC-----CeEEEEECCCCc
Q 001363 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPESN 655 (1092)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iw~~~~~~ 655 (1092)
||..+.+....-..+.. ..-..++..+++++++.|+ .+ ..+.+||..+.+
T Consensus 270 yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 99988765544332221 1123566667899999988 34 457778776653
No 277
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.35 E-value=7.1e-05 Score=74.90 Aligned_cols=187 Identities=10% Similarity=0.037 Sum_probs=125.7
Q ss_pred CCCeeEEEEecCCCEEEEEe-C--CeEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce
Q 001363 802 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 877 (1092)
Q Consensus 802 ~~~v~~~~~s~dg~~l~~~s-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 877 (1092)
..-...+.|++ +.++.+.+ + ..|+.+|+.+++.+....-.... --.+++. ++++......++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34456889986 45555544 2 47999999999999887644332 2345554 45566666778999999999999
Q ss_pred eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eC
Q 001363 878 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 956 (1092)
Q Consensus 878 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d 956 (1092)
.+.++..-. .-..+ ++|++.|+.+..++.|.++|..+.+......+....... ..+..+.+. +|+..+.. .+
T Consensus 97 ~~~ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~---~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL---DNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc---ccceeeEEe-CCEEEEEECCC
Confidence 999887432 22344 457777777677889999999987655433332211111 134556655 67655554 56
Q ss_pred CcEEEEEcCCceeeeeeccC------------CCCCEEEEEEecCCCEEEEEEC
Q 001363 957 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 957 ~~i~lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~~~ 998 (1092)
+.|.+.|..+|+.+..+-.+ -..-...++++|+++.|++.+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 78999999999988775422 1235688999998877776664
No 278
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.33 E-value=0.0013 Score=70.65 Aligned_cols=238 Identities=10% Similarity=-0.039 Sum_probs=144.8
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC---CceeEE-EecCC
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTYS-FEGHG 485 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---~~~~~~-~~~~~ 485 (1092)
+|+.+.. ..|+..|+.+++... .+ ........++|.+++.. ++++-...+.|..+++.+ +..... +....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 4444444 348888988765332 22 23445789999987664 555666678999999876 222222 32222
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+... ..+.|...++...
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG~ 153 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 153 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCCC
Confidence 34567777533 34556666778899999987654444343344567899999977777665431 1357888887543
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
....+.... ......+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 154 -~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 154 -DIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp -CEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred -CeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 333332211 25678999999887777665 5678999998754433333322222234577775 456666666678
Q ss_pred eEEEEECCCCceeeec
Q 001363 645 RIKILETPESNSVDAA 660 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~ 660 (1092)
.|..++..+++....+
T Consensus 230 ~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcceEEE
Confidence 8999887766554443
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.33 E-value=0.00066 Score=75.21 Aligned_cols=249 Identities=11% Similarity=-0.008 Sum_probs=155.1
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
+.-.|.+..+.+ +++++ ....|+..++.++..... . .....+..++|.+.+..|..+
T Consensus 77 d~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~~-------------------~-~~~~~~~gl~~d~~~~~ly~~ 133 (386)
T 3v65_B 77 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------L-NNLENAIALDFHHRRELVFWS 133 (386)
T ss_dssp TSSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEEE-------------------E-CSCSCEEEEEEETTTTEEEEE
T ss_pred CCCeECCccccc-eeEee--cCccceeeccCCCcEEEE-------------------e-cCCCccEEEEEecCCCeEEEE
Confidence 345677777755 34444 236788888876654321 1 233468899999866666655
Q ss_pred -eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001363 415 -YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 415 -~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.+++.......+.........+++
T Consensus 134 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giav 209 (386)
T 3v65_B 134 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 209 (386)
T ss_dssp ETTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEE
T ss_pred eCCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEE
Confidence 456789999988754211 12222234567899986664 4556666778999987755433334333455678888
Q ss_pred cccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001363 494 HAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
.+. ++.++++-... +.|...+++...........-.....++++|++..|+.+-. ..+.|..+|.........+.
T Consensus 210 dp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~ 285 (386)
T 3v65_B 210 HPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 285 (386)
T ss_dssp ETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEEC
T ss_pred EcC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEE
Confidence 653 33445554444 77888888765554444444446789999998888877643 35679999986543333332
Q ss_pred eccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
... .....+++. .+..+++-...+.|..++..+|+....+..
T Consensus 286 ~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 286 QGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCC---CCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 222 456777773 344445555678888888777777666653
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.29 E-value=0.00083 Score=74.38 Aligned_cols=246 Identities=11% Similarity=-0.038 Sum_probs=153.0
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001363 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1092)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 479 (1092)
.|.+..+ ..+|+.+.. ..|+..++.++.... +.........++|.+.+.. ++++-...+.|..+++..+....
T Consensus 80 ~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 80 SCKALGP-EPVLLFANR-IDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp CEEECSS-CCEEEEECB-SCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEE
T ss_pred eECCccc-cceeEeecC-ccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEE
Confidence 3455555 345554433 458888887654222 2223345789999986664 45566667899999987765444
Q ss_pred EEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ....|+.
T Consensus 153 ~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r 229 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEA 229 (386)
T ss_dssp EECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEE
T ss_pred EEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEE
Confidence 33322334456676543 34566666677889888887655444444444567899999988777766431 1367888
Q ss_pred EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001363 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1092)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1092)
.++............ ......++++|++..|+.+. ..+.|..+++........+... ......+++ .++.+++
T Consensus 230 ~~~dG~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 230 SSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW 303 (386)
T ss_dssp EETTSCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred EeCCCCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEE
Confidence 887654333222221 24578999998777776654 5678999998754443333322 233467777 4456666
Q ss_pred EEeCCCeEEEEECCCCceeeecc
Q 001363 639 VIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 639 ~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
+-...+.|..++..+++....+.
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEc
Confidence 66677888888866665555544
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.29 E-value=0.0013 Score=71.76 Aligned_cols=248 Identities=10% Similarity=-0.036 Sum_probs=152.8
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001363 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 477 (1092)
..+|.+..++ .+|+.+.. ..|+..++.+.... .+......+..++|.+.+.. ++++-...+.|..+++..+..
T Consensus 35 ~~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~~----~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFANR-IDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp SSCEEESSSC-CEEEEECB-SCEEEECTTSCCEE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred CCcccccccC-ceeEeecc-cceEEEeCCCCeeE----EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCc
Confidence 3455666663 34554433 34777787664321 12223345789999987664 455556678899999887654
Q ss_pred eEEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001363 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1092)
Q Consensus 478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i 557 (1092)
...+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+...... ...|
T Consensus 108 ~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~I 184 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRI 184 (349)
T ss_dssp EEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCEE
T ss_pred eEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCEE
Confidence 4433333334566777543 345666666778999999886655544444445678999999777776654311 3678
Q ss_pred EEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE
Q 001363 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1092)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1092)
+..++............ ......++++|++..|+.+. ..+.|..+++........+... ......+++ .++.+
T Consensus 185 ~r~~~dG~~~~~~~~~~---~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~l 258 (349)
T 3v64_C 185 EASSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSL 258 (349)
T ss_dssp EEEETTSCSCEESCCSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEE
T ss_pred EEEeCCCCCcEEEEECC---CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEE
Confidence 88887644332222211 24678999998877776654 5678999998754443333322 233467777 44556
Q ss_pred EEEEeCCCeEEEEECCCCceeeecc
Q 001363 637 LAVIANENRIKILETPESNSVDAAG 661 (1092)
Q Consensus 637 l~~~~~dg~i~iw~~~~~~~~~~~~ 661 (1092)
+++-...+.|..++..+++....+.
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEecCCCCeEEEEEccCCCccEEec
Confidence 6666667888888866665544443
No 282
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.27 E-value=0.022 Score=69.56 Aligned_cols=527 Identities=11% Similarity=0.055 Sum_probs=272.2
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..|.++....+|.. -.|+.+ -+..+|..+++.... .......|.++.. .+| .|..+
T Consensus 63 ~~i~~i~~d~~g~l--WigT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWig 118 (758)
T 3ott_A 63 TRIYCGVIIDNTYL--YMGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWLG 118 (758)
T ss_dssp SCEEEEEEETTTEE--EEEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEEE
T ss_pred ceEEEEEEcCCCcE--EEEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEEE
Confidence 46888888888863 334444 478999877532110 0112235777765 345 55556
Q ss_pred eCCCEEEEEEccCCCcccceEEEc-----ccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC-----
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEID-----AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH----- 484 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~----- 484 (1092)
+.+| +..+|..+++.. .+. .....|.++....+|. +. .|+.+ -+..+|..+++.. .+...
T Consensus 119 t~~G-l~~~~~~~~~~~----~~~~~~~~l~~~~i~~i~~d~~g~--lW-igt~~-Gl~~~~~~~~~~~-~~~~~~~~~~ 188 (758)
T 3ott_A 119 ALNG-LYTYQLQSRKLT----SFDTRRNGLPNNTIYSIIRTKDNQ--IY-VGTYN-GLCRYIPSNGKFE-GIPLPVHSSQ 188 (758)
T ss_dssp ETTE-EEEEETTTCCEE----EECHHHHCCSCSCEEEEEECTTCC--EE-EEETT-EEEEEETTTTEEE-EECCCCCTTC
T ss_pred cCCc-ceeEeCCCCeEE----EeccCCCCcCCCeEEEEEEcCCCC--EE-EEeCC-CHhhCccCCCceE-EecCCCcccc
Confidence 6664 888898765421 121 1124588888877777 33 34444 5788887776543 22111
Q ss_pred -CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 485 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 485 -~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
...|.++.. +.++..|..|+. +-+..+|..+.............|.++....+|...+.. . . -+.+++..
T Consensus 189 ~~~~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~ 259 (758)
T 3ott_A 189 SNLFVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHND 259 (758)
T ss_dssp SSCCEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCT
T ss_pred ccceeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecC
Confidence 123666655 334444555554 456777766543322111123357788888888766554 2 1 27888887
Q ss_pred CCeEEEEEee----ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe-----CCCCCCCCceEEEccCC
Q 001363 564 EGAIKRTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-----AGGGLPENPRICFNKNG 634 (1092)
Q Consensus 564 ~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~v~~s~~~ 634 (1092)
++........ .......|.++....++. |-.|+..| +.++.... . ..... .......|.++.-..+|
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~i~~D~~g 335 (758)
T 3ott_A 260 TTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS-A-LQFIPISQITGTGDGNQFYSLFRDSKG 335 (758)
T ss_dssp TSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTC
T ss_pred CCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC-c-eeEEecccCCCCCCCceEEEEEEcCCC
Confidence 7654322211 112235688888887765 45555566 55443322 1 11111 00111246667766666
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecccccCceeeeeecCCCccccccccCCceeecCCCCCCCccceeeccccccceec
Q 001363 635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714 (1092)
Q Consensus 635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~lw~ 714 (1092)
.+- +|+.+| +..++..++.... ++.+.
T Consensus 336 ~lW-iGt~~G-l~~~~~~~~~~~~---------------------------------------------------~~~~~ 362 (758)
T 3ott_A 336 FYW-FGGANG-LIRFTDPAGERHD---------------------------------------------------AIWYR 362 (758)
T ss_dssp CEE-EEETTE-EEEESCTTSSCCC---------------------------------------------------CEEEC
T ss_pred CEE-EeeCCc-ceeecccccccce---------------------------------------------------eEEec
Confidence 644 445544 5555443321000 00000
Q ss_pred cccccCccccccccCCccccccEEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeee
Q 001363 715 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVN 794 (1092)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 794 (1092)
... . +.......|.++....+|...+.+ . +-+..|+...... ..+. ..
T Consensus 363 ~~~--~--------~~~l~~~~v~~i~~d~~g~lWigt-~-~GL~~~~~~~~~~------------~~~~--------~~ 410 (758)
T 3ott_A 363 MGD--K--------TYPLSHNRIRHIYEDKEQQLWIAT-D-GSINRYDYATRQF------------IHYN--------IV 410 (758)
T ss_dssp TTC--S--------SSCCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEE------------EEEE--------EE
T ss_pred cCC--c--------CCCCCCCceEEEEECCCCCEEEEe-C-CcHhhcCcCCCcE------------EEee--------cC
Confidence 000 0 000023457777777778755543 3 4455555332211 0000 00
Q ss_pred cCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCc-----eee---EEec---C-CCCCeEEEEEcCCCCCEEEEE
Q 001363 795 DTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNVIAIG 862 (1092)
Q Consensus 795 ~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~lasg 862 (1092)
..........|.++...++|.+.+...++-+.++|..+. ... ..+. + ....|.++...+ ++.+.+.+
T Consensus 411 ~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~ 489 (758)
T 3ott_A 411 DNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLL 489 (758)
T ss_dssp CCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEE
T ss_pred CCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEc
Confidence 000000234578888888887666554567888886531 111 1111 1 223588999988 77766534
Q ss_pred eCCCcEEEEEcCCceeeEeecc---ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCc
Q 001363 863 MDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 939 (1092)
Q Consensus 863 ~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 939 (1092)
+..+-+..+|..+++....... ....+.++....+|.+.+. +..| |..++..++.... .. ..+.. ...|
T Consensus 490 ~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~---~~-~~gl~--~~~i 561 (758)
T 3ott_A 490 YNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQS---IS-FGSFS--NNEI 561 (758)
T ss_dssp TTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCB---CC-CCC-----CCE
T ss_pred cCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEE---ec-ccCCC--ccce
Confidence 4445588899887764432211 1346788888888877764 4555 8888877654222 11 11111 1357
Q ss_pred eEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEe-cCCCEEEEEECCCcEEEEEcC
Q 001363 940 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus 940 ~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~Dg~i~vwd~~ 1008 (1092)
.++... +|.+.+++ ++.+..+|..+.+...--. ....+....+. +||. |..|+.+|- ..++..
T Consensus 562 ~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~G~-l~fG~~~Gl-~~f~p~ 625 (758)
T 3ott_A 562 LSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQNM--TNKRFTSLLFDPKEDC-VYLGGADGF-GISHSN 625 (758)
T ss_dssp EEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC----CCCCCSEEEEETTTTE-EEEECBSEE-EEEEC-
T ss_pred EEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEecC--CCCceeeeEEECCCCc-EEEecCCce-EEEChh
Confidence 777764 66655544 5568888987765432111 12223344444 4664 555777774 445544
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.27 E-value=0.00084 Score=68.30 Aligned_cols=217 Identities=12% Similarity=0.128 Sum_probs=133.9
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001363 838 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 838 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~ 916 (1092)
.+.+-...+..++++|+++.++++...++.|...|.. ++.+..+.- -......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4555557899999999555666678888999999998 887777642 22568889999999877776677889999987
Q ss_pred CCce-eeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCC---ceeeeee------ccCCCCCEEEEE
Q 001363 917 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQW------FPISSVPISQAT 985 (1092)
Q Consensus 917 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~---~~~~~~~------~~~h~~~v~~l~ 985 (1092)
.... ..........+..........++++|+++.|.++ ......||.+.. ...+... ...+-..+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6542 1112222111111222457999999999777764 333445555531 1111111 011344678999
Q ss_pred EecCC-CEEEEEECCCcEEEEEcCCCceEEeecccc-ccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001363 986 FSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus 986 fs~dg-~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1060 (1092)
|.|.. ++++.+.....+.++|.. |+.+..+.... .... ....-.+-.++++| +++++ ..+.-+.++.+.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l--~~~~~qpEGia~d~-~G~ly-IvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGL--SHNIKQAEGVAMDA-SGNIY-IVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGC--SSCCCSEEEEEECT-TCCEE-EEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCc--ccccCCCCeeEECC-CCCEE-EEcCCceEEEEEe
Confidence 99855 455555566788899976 55665555332 1000 01112346789999 46644 4477776666643
No 284
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.24 E-value=0.0022 Score=68.85 Aligned_cols=232 Identities=9% Similarity=-0.066 Sum_probs=139.7
Q ss_pred CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-CCCEEEEEEccCC---Cccc
Q 001363 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGG---SDAR 432 (1092)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~---~~~~ 432 (1092)
..|+..|+.+++.... + .....+..++|++++..|..+. ..+.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 6789999887764432 1 2345678999999776666554 5688999998762 2122
Q ss_pred ceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEecC-CeE
Q 001363 433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI 511 (1092)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~i 511 (1092)
. .+...-.....+++.+.+.. ++++-...+.|.+.|++.......+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222235678999876654 4556667889999997754433333333455678888543 33344444333 678
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001363 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1092)
Q Consensus 512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 591 (1092)
...+++...........-.....+++++++..|+.+-. ..+.|..+|...... +.+............+++. .+.
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ 220 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDK 220 (316)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTE
T ss_pred EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCE
Confidence 88887654433333333456789999998888877653 256799999874333 3332211012345677774 344
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEe
Q 001363 592 QILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
.+++-...+.|..++..+++.+..+.
T Consensus 221 ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 44455567788888877776555553
No 285
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.23 E-value=0.00021 Score=87.05 Aligned_cols=246 Identities=6% Similarity=-0.058 Sum_probs=133.2
Q ss_pred CCCC-cEEEEEEC-CCCCEEEEEeC-C----CEEEEEEccCC-CcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-
Q 001363 394 DPGV-SVNRVVWS-PDGSLLGVAYS-K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD- 464 (1092)
Q Consensus 394 ~h~~-~V~~l~~s-pdg~~las~~~-d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d- 464 (1092)
+|.. .+...+|| |||++||.+.. + .+|+++|+.+| +.+.. .+ ......++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~---~~~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KV---SGTNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CE---EEECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cc---cCceeeEEEecCCCE--EEEEEECC
Confidence 4443 78889999 99999997643 2 35999999998 64321 11 122457899999985 3333333
Q ss_pred ----CcEEEEECCCCce--eEEEec-CCcCeEEEeecccCCccEEEEEec---CCeEEEEEcCCCC-ce--EEe-cCCCC
Q 001363 465 ----KTIKVWDAVTGSR--TYSFEG-HGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLG-AR--VDY-DAPGL 530 (1092)
Q Consensus 465 ----~~i~vwd~~~~~~--~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~-~~--~~~-~~~~~ 530 (1092)
..|.++++.++.. ...+.. .......+.+ ++||++|+..+. ...|.++|+.+.. .. ..+ .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 3688889887753 223322 2233455566 557777776553 3357888887753 22 222 22333
Q ss_pred ceEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCCeEEEE-EeeccccCCceEEEEEcCCCCEE-EEEeCCCc--EEEE
Q 001363 531 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKIW 605 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~--i~iw 605 (1092)
...++.|+ +|..|+..+... .+...|+.+|..++..... +..+. ....+..+.+. ++.+ ++...++. |.++
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 44444443 366666555432 3466788899875322122 22222 01134455554 4444 45666675 4555
Q ss_pred EC-------CCCceEEEEeCCCCCCCCceEEE------ccCCCE-EEEEeCC---CeEEEEECCCCc
Q 001363 606 DM-------NKVQLLTTIDAGGGLPENPRICF------NKNGTL-LAVIANE---NRIKILETPESN 655 (1092)
Q Consensus 606 d~-------~~~~~~~~~~~~~~~~~v~~v~~------s~~~~~-l~~~~~d---g~i~iw~~~~~~ 655 (1092)
++ .+++....+..... ...+.+ ++++.. +++.+.. +.+..+++.+++
T Consensus 397 dl~~~~~~~~~g~~~~~l~l~~~---~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 397 MADSQDGVFKAGTGLREVVMEEP---IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp ECCTTTSCCCTTTCCEECCCCCS---SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ecccccccccCCccceEECCCCc---eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 65 34441344432221 223344 345543 3333332 456667766553
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.20 E-value=0.0024 Score=70.91 Aligned_cols=248 Identities=9% Similarity=-0.036 Sum_probs=152.9
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCC
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~ 485 (1092)
+|+.+. ...|+..++.+..... +......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 455443 4568888888654222 2234456889999987664 4555556788999998752 2223333234
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+.+|+..-.. ....|+..++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence 45667777543 34566666778899999988665555554444567899999977777665421 1356888887654
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
......... ......+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 236 ~~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 236 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred ccEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 433333322 25678999999888887765 5678999998765544444432222334566663 345556666678
Q ss_pred eEEEEECCCCceeeecccccCceeee
Q 001363 645 RIKILETPESNSVDAAGVLSDNLRKL 670 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~~~~~~~v~~~ 670 (1092)
.|..++..+++....+.........+
T Consensus 312 ~V~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp SEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred eEEEEEcCCCCceEEEecCCCCCceE
Confidence 88888877776655554333333333
No 287
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.14 E-value=0.0046 Score=66.63 Aligned_cols=282 Identities=11% Similarity=0.024 Sum_probs=148.0
Q ss_pred CCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 335 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
..+.+|.|.+++. ++++|. .|.| +...+.|+.=...... .......+.+++|++ +..++ +
T Consensus 36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~tW~~~~~~---------------~~~~~~~~~~i~~~~-~~~~~-~ 95 (327)
T 2xbg_A 36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQTWEPRTLV---------------LDHSDYRFNSVSFQG-NEGWI-V 95 (327)
T ss_dssp SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSSCEECCCC---------------CSCCCCEEEEEEEET-TEEEE-E
T ss_pred CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCCCeECCCC---------------CCCCCccEEEEEecC-CeEEE-E
Confidence 4799999988877 566654 4544 3333444321110000 112345788999986 44444 4
Q ss_pred eCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcCeEEEee
Q 001363 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCP 493 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~i~~ 493 (1092)
+..+.|.. ....|+..........+.+.+..+.+.+++. .++.+ .++.|..- .+.|+.-.. ...+...+..+++
T Consensus 96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence 45664433 3344543332211112345577888887776 45544 46654332 233433222 2344556788877
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee
Q 001363 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1092)
.+ ++.+++.+...+..+-+|-....-..........+..+.+.++++.++.+. .+.+++.+...|+....+..
T Consensus 171 ~~--~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~~ 243 (327)
T 2xbg_A 171 SP--SGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELLS 243 (327)
T ss_dssp CT--TSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCBC
T ss_pred cC--CCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEeccC
Confidence 54 556666554433334343211111111223345788899999988766542 34466654333443333322
Q ss_pred c-cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-CCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 574 L-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 574 ~-~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
. ......+..+.+.+++..+++ +.+|.+ .+..+.|+.-..+... .....+..+.|.+++. +++++.+|.|.-++-
T Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 244 PLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp TTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 1 001235788889887665555 456766 4555556554444321 1123578898876554 666677887766653
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=0.00055 Score=76.93 Aligned_cols=246 Identities=12% Similarity=0.041 Sum_probs=141.5
Q ss_pred CeeEEEEec-CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC-CC----cEEEEEcCCc
Q 001363 804 AVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARSS 876 (1092)
Q Consensus 804 ~v~~~~~s~-dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg----~v~iwd~~~~ 876 (1092)
....++++| ++..|.++. .+.|+.+|..++...... ........++|++ ++++|+++.. ++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 456889998 455565555 478999999876654433 3456688999999 7885555554 22 3444443 33
Q ss_pred eee--EeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 877 EVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 877 ~~~--~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
... ..+. .......++++| +|.++++-..++.|..++..++.... ....... .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 222 2222 123456789999 67777776678889999998754321 1222111 14678999999996665
Q ss_pred E--eCCcEEEEEcCC--cee--eeeecc-----CC---------CCCEE-EEEEe--------cCCCEEEEEECCCcEEE
Q 001363 954 V--HETHLAIYEAEE--LTC--LKQWFP-----IS---------SVPIS-QATFS--------CDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus 954 ~--~d~~i~lwd~~~--~~~--~~~~~~-----~h---------~~~v~-~l~fs--------~dg~~l~t~~~Dg~i~v 1004 (1092)
+ ..+.|..++... +.. +..+.. +. -.... .++.. ++|.++++-...++|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 557888887653 221 111110 00 11223 45553 34666665556678998
Q ss_pred EEcCCCceEEeecccc--ccC---C--CCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1005 HEASNLEVQCRILSTA--YLR---P--TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1005 wd~~~~~~~~~~~~~~--~~~---~--~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
++ .+|.......... ... . .....--.|..++++|+++.++++=...+.|+.+++.
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 4565443322100 000 0 0000112578899998545566665566788887763
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.11 E-value=0.00047 Score=77.48 Aligned_cols=248 Identities=11% Similarity=0.051 Sum_probs=143.1
Q ss_pred CeeEEEEecC--CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC---C-cEEEEEcCCc
Q 001363 804 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS 876 (1092)
Q Consensus 804 ~v~~~~~s~d--g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g-~v~iwd~~~~ 876 (1092)
....++++|+ +..|..+. .+.|+.+|..+++.... .........+++++ +++++++-... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 44454454 48899999987766544 33556789999999 77754443321 1 2333333222
Q ss_pred ee-eEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE
Q 001363 877 EV-ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954 (1092)
Q Consensus 877 ~~-~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~ 954 (1092)
.. ...+. .-.....+++.| +|.++++-..++.|+.++..++.... ........ .....++|+|+|+.|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~~-----~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDTK-----GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCCC-----CCcccEEEeCCCCEEEEE
Confidence 11 01111 233456689999 67777666677889999988665411 11111111 124579999999966664
Q ss_pred --eCCcEEEEEcC--Cceee--eeecc-----C---------CCCCEEEEEE---------ecCCCEEEEEECCCcEEEE
Q 001363 955 --HETHLAIYEAE--ELTCL--KQWFP-----I---------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus 955 --~d~~i~lwd~~--~~~~~--~~~~~-----~---------h~~~v~~l~f---------s~dg~~l~t~~~Dg~i~vw 1005 (1092)
..+.|..++.. ++... ..+.. + .-.....+++ .++|.++++-...++|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45678888765 23211 11110 0 1124677999 6777777776667889999
Q ss_pred EcCCCceEEeecccc-----ccCC--CCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1006 EASNLEVQCRILSTA-----YLRP--TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1006 d~~~~~~~~~~~~~~-----~~~~--~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
+. +|.......... +... .....--.|..++++|.++.++++=...+.|+.+++.
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 564432221100 0000 0000112467899995456666666667788888763
No 290
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=0.0031 Score=70.83 Aligned_cols=239 Identities=13% Similarity=0.072 Sum_probs=135.2
Q ss_pred CceEEeecC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE
Q 001363 336 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1092)
Q Consensus 336 ~V~~v~~sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 414 (1092)
....++++| ++..|.++-.. +.|+.+|..++.... +.........++|+++|++|+++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyva 196 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMIIT 196 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEEE
Confidence 568899998 34445554433 789999988765432 22244678899999999977666
Q ss_pred eCC----C-EEEEEEccCCCcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcC
Q 001363 415 YSK----H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP 487 (1092)
Q Consensus 415 ~~d----~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~ 487 (1092)
... . .+.+.+.. +.... ...+. .......++++| +|. ++++-..++.|..++..++........ ....
T Consensus 197 d~~~~~~~~~v~~~~~~-g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~ 271 (430)
T 3tc9_A 197 NDQNNNDRPNNYILTRE-SGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW 271 (430)
T ss_dssp ECCSCTTSEEEEEEEGG-GTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSSC
T ss_pred eCCCCcccceEEEEeCC-Cceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCCc
Confidence 542 2 34444443 33221 11222 123456789999 565 666666788999999887664322221 2234
Q ss_pred eEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc----eEEecCC---------------CCceE-EEEEc--------
Q 001363 488 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCT-RMAYS-------- 538 (1092)
Q Consensus 488 v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~----~~~~~~~---------------~~~i~-~~~~s-------- 538 (1092)
...+++++ ++. ++++-...+.|..++.+.... ...+... -.... .++..
T Consensus 272 P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D 349 (430)
T 3tc9_A 272 EFHIQFHP--SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS 349 (430)
T ss_dssp CEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSS
T ss_pred ceeEEEcC--CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccC
Confidence 66788855 566 455556778899988764311 1111110 00122 44443
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec---------c------ccCCceEEEEEcCC-CCEEEEEeCCCcE
Q 001363 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------Q------LQHNSVSVVHFDTA-KDQILAAGDDHVI 602 (1092)
Q Consensus 539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------~------~~~~~v~~~~~~~~-~~~l~~~s~dg~i 602 (1092)
++|...++-. +.+.|+.++. +|... .+.+. . ..-.....++++|+ +..+++-..++.|
T Consensus 350 ~~g~lyvaD~----~n~~I~~i~~-~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rI 423 (430)
T 3tc9_A 350 DEYDFYFCDR----ENHCIRILTP-QGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRI 423 (430)
T ss_dssp CCEEEEEEEG----GGTEEEEECT-TSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEE
T ss_pred CCCeEEEEEC----CCcEEEEECC-CCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence 2344444332 2566888884 45443 33322 0 00125788999985 4444444456677
Q ss_pred EEEECC
Q 001363 603 KIWDMN 608 (1092)
Q Consensus 603 ~iwd~~ 608 (1092)
+.++++
T Consensus 424 r~i~~e 429 (430)
T 3tc9_A 424 RKIGYE 429 (430)
T ss_dssp EEEEEC
T ss_pred EEEccC
Confidence 777653
No 291
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.99 E-value=0.0094 Score=66.14 Aligned_cols=250 Identities=8% Similarity=-0.061 Sum_probs=150.3
Q ss_pred eEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe-C
Q 001363 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-S 416 (1092)
Q Consensus 338 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~ 416 (1092)
+|.+..+.. +++.+. ...|+..++.+..... +...-..+..++|++.+..|..+. .
T Consensus 76 ~C~~~~~~~-~ll~~~--~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~ 132 (400)
T 3p5b_L 76 ACKAVGSIA-YLFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLS 132 (400)
T ss_dssp SCCCSTTSC-EEEEEE--TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETT
T ss_pred ceeeccccc-eeEEec--cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecC
Confidence 344443333 344443 3678888888765432 122446788999999776666654 5
Q ss_pred CCEEEEEEccCCCcc-cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001363 417 KHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
.+.|+.+++.+.... .....+.........+++.+.+.. ++++-...+.|.+.+++.......+.........+++.+
T Consensus 133 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 133 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence 678999998763210 011122223445778999985554 556666678999999876654444443445567888865
Q ss_pred cCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001363 496 KENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1092)
Q Consensus 496 ~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1092)
. ++.++++-.. .+.|...+++...........-.....+++++++..|+.+-. +...|..+|.............
T Consensus 212 ~-~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~ 287 (400)
T 3p5b_L 212 V-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDE 287 (400)
T ss_dssp T-TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECS
T ss_pred c-cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCC
Confidence 4 2334444323 477888888765554444444456789999998888887743 2567999998654433333321
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001363 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 575 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
. .......+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus 288 ~-~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 288 K-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp S-TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred C-CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 1 11345566663 23344455566788888877777666654
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.97 E-value=0.0021 Score=72.07 Aligned_cols=239 Identities=15% Similarity=0.088 Sum_probs=136.6
Q ss_pred CCceEEeecCC---CceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEE
Q 001363 335 SSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1092)
Q Consensus 335 ~~V~~v~~spd---g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 411 (1092)
.....++|+|+ |. |+++-. .+.|+.+|..++.... +.+.......++|+++|+++
T Consensus 139 ~~P~gvavd~~s~~g~-Lyv~D~-~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~ly 196 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDD-LYWVGQ-RDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMV 196 (433)
T ss_dssp SCCCEEEECTTTTTCE-EEEECB-TSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEE
T ss_pred CCCceEEEccccCCCE-EEEEeC-CCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEE
Confidence 35779999995 55 444433 3889999988776543 22244568999999999944
Q ss_pred EEEeCC---C-EEEEEEccCCCcccceEEEcccccceeEEEEec-CCCcEEEEEEeCCCcEEEEECCCCceeEEE-ec-C
Q 001363 412 GVAYSK---H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG-H 484 (1092)
Q Consensus 412 as~~~d---~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~-~ 484 (1092)
++.... . .+...+...+.... ..+. .-.....+++.| +|. ++++-..++.|+.+|..++.....+ .. .
T Consensus 197 Vad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~ 271 (433)
T 4hw6_A 197 VVDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDT 271 (433)
T ss_dssp EEECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred EEcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence 443311 2 23444443322111 1121 223456789999 666 5666667788999998878763333 21 1
Q ss_pred CcCeEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc----eEEecCC---------------CCceEEEEE-------
Q 001363 485 GAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCTRMAY------- 537 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~----~~~~~~~---------------~~~i~~~~~------- 537 (1092)
...-..+++++ ++. +.++-...+.|+.++++.... ...+... -.....+++
T Consensus 272 ~~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~ 349 (433)
T 4hw6_A 272 KGSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA 349 (433)
T ss_dssp CSSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred CCCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence 22234577754 556 555556678899988763211 1111110 113566888
Q ss_pred --ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc---------------cCCceEEEEEc-CCCCEEEEEeCC
Q 001363 538 --SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------QHNSVSVVHFD-TAKDQILAAGDD 599 (1092)
Q Consensus 538 --s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~-~~~~~l~~~s~d 599 (1092)
.++|...++-. +.+.|+.++. +|.. .++.+... .-.....+++. +++..+++-..+
T Consensus 350 ~dd~~g~lyvaD~----~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n 423 (433)
T 4hw6_A 350 GEEDEYDFYFCDR----DSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN 423 (433)
T ss_dssp TSSCCEEEEEEET----TTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred ccCCCCcEEEEEC----CCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence 66666555533 2667888885 5543 33333210 11346778888 455444444456
Q ss_pred CcEEEEECC
Q 001363 600 HVIKIWDMN 608 (1092)
Q Consensus 600 g~i~iwd~~ 608 (1092)
+.|+.++++
T Consensus 424 ~rIr~i~~e 432 (433)
T 4hw6_A 424 HRVRKIAPE 432 (433)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEecC
Confidence 677776653
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.95 E-value=0.013 Score=62.60 Aligned_cols=239 Identities=9% Similarity=-0.019 Sum_probs=145.7
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecCCcCe
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPV 488 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v 488 (1092)
+|+.+ ....|+..++.+...... ..+ .......+++|.+.+.. ++++-...+.|..+++..+... ..+...-...
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~-~~~-~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENAT-IVV-GGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCE-EEE-EEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred EEEEE-ccCeEEEEECCCCceEEE-EEe-cCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 34443 345689999987531111 112 22335678999986654 5556667788999998776422 2222222345
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001363 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1092)
Q Consensus 489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1092)
..+++.+. ++.+.++-...+.|.+++++.................+++.|.+..|+..... ....|+..++.....
T Consensus 82 ~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~~- 157 (318)
T 3sov_A 82 DGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSR- 157 (318)
T ss_dssp CEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCSC-
T ss_pred cEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCCe-
Confidence 56776533 44566666677899999987655444444444567899999977776665421 245688888764332
Q ss_pred EEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001363 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1092)
Q Consensus 569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1092)
..+.... -.....+++++++..|+.+. ..+.|..+|+........... .......+++.. +.++.+-...+.|.
T Consensus 158 ~~~~~~~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~ 232 (318)
T 3sov_A 158 FIIINSE--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSIL 232 (318)
T ss_dssp EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred EEEEECC--CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEE
Confidence 2222111 24678999999877776654 567899999875443333321 123346677753 45555656678899
Q ss_pred EEECCCCceeeecc
Q 001363 648 ILETPESNSVDAAG 661 (1092)
Q Consensus 648 iw~~~~~~~~~~~~ 661 (1092)
.++..+++....+.
T Consensus 233 ~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 233 ACNKYTGEGLREIH 246 (318)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEECCCCCceEEEe
Confidence 89887775544443
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.88 E-value=0.014 Score=62.40 Aligned_cols=233 Identities=12% Similarity=0.010 Sum_probs=141.5
Q ss_pred CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEEccCCCcccce
Q 001363 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQ 434 (1092)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~~~~ 434 (1092)
...|+..++.+........ + .....+..++|.+.+..|..+ ...+.|..++..++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV-----------------V-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE-----------------E-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEEEE-----------------e-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 3679999988764211100 1 112356789999966555554 4567899999887642221
Q ss_pred EEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccCCccEEEEEe--cCCeEE
Q 001363 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIK 512 (1092)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~--~dg~i~ 512 (1092)
.+...-.....+++.+.+.. ++++-...+.|.+++++.......+.........+++.+.. ..|+.+. ..+.|.
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIE 148 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEE
Confidence 12222235668999876554 55566667899999976544333333344556788886532 3444444 357788
Q ss_pred EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE
Q 001363 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1092)
Q Consensus 513 vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 592 (1092)
..+++...........-.....+++++++..|+.+-. ..+.|..+|...........+.. .....+++.. +..
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~l 221 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DIL 221 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEE
T ss_pred EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEE
Confidence 8887754444333333445689999998888877643 35679999986543322222222 4566777753 334
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeC
Q 001363 593 ILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1092)
+.+-...+.|..++..+|+....+..
T Consensus 222 ywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEEecCCCeEEEEECCCCCceEEEeC
Confidence 44555678888899887776666543
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.87 E-value=0.013 Score=70.50 Aligned_cols=238 Identities=10% Similarity=-0.025 Sum_probs=146.0
Q ss_pred EEEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCC
Q 001363 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1092)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~ 485 (1092)
+|+.+. ...|+..++...... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred cccccc-ccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 444443 344788888765422 22234456789999986654 5556666788999998753 2223333234
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001363 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1092)
.....|++.+. .+.+.++-...+.|.+.+++.......+.........|++.|.+.+|+..-.. ....|...++...
T Consensus 471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 45567777543 23566676778899999988665544444444567899999987777665421 1256888888655
Q ss_pred eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001363 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1092)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1092)
.....+... ......|++.+.+..|+.+. ..+.|...++........+...........+++.. +.++++-...+
T Consensus 548 ~~~~lv~~~---l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~ 623 (791)
T 3m0c_C 548 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE 623 (791)
T ss_dssp CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred ceEEEEeCC---CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCC
Confidence 443333322 25788999998877777765 55679999987665555554333223334566532 34444444567
Q ss_pred eEEEEECCCCceeeec
Q 001363 645 RIKILETPESNSVDAA 660 (1092)
Q Consensus 645 ~i~iw~~~~~~~~~~~ 660 (1092)
.|...+..++..+..+
T Consensus 624 ~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 624 AIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred EEEEEeCCCCcceEEe
Confidence 8888887766554444
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.81 E-value=0.0074 Score=63.62 Aligned_cols=197 Identities=12% Similarity=0.157 Sum_probs=125.7
Q ss_pred CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC---CCC---EEEEEeC---CCcEEEEEcC--CceeeEe
Q 001363 814 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGMD---DSTILIYNAR--SSEVISK 881 (1092)
Q Consensus 814 g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---d~~---~lasg~~---dg~v~iwd~~--~~~~~~~ 881 (1092)
..+++... .+.+.+||+ +|+.++.+.. +.+..+.+-|. +++ ++++... +++|.+|++. +++ +..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 34444333 578999999 8998888853 56677766651 111 2333333 5799999773 333 444
Q ss_pred ecc------cc-CCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEcCC---CceeeeeeeecCCCCcCCCCCceEEEEccC
Q 001363 882 LEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 882 l~~------h~-~~V~~l~~--spd-g~-~l~s~s~Dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
+.. .. ..+..+++ +|. ++ +++....+|.+..|++.. +.. ..+.++.+.-. +.+..++..+.
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~-~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI-SGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE-EEEEEEEEECS----SCEEEEEEETT
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc-cceEEEEecCC----CCcceEEEcCC
Confidence 421 11 56777888 775 44 577788899999999843 222 22333333222 25789999998
Q ss_pred CCEEEEEeCC-cEEEEEcC-----CceeeeeeccCC-CCCEEEEEE--ecCCC-EEEEEE-CCCcEEEEEcC-CCceEEe
Q 001363 948 QTRFLLVHET-HLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQCR 1015 (1092)
Q Consensus 948 g~~la~~~d~-~i~lwd~~-----~~~~~~~~~~~h-~~~v~~l~f--s~dg~-~l~t~~-~Dg~i~vwd~~-~~~~~~~ 1015 (1092)
...|.++.+. .|..|+.+ +++.+..+-.++ ...+..|++ .++|+ ||++++ .+.+..|||.. +.+.+.+
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 8888887554 46566644 344554432333 347888887 56666 677666 56799999997 7888888
Q ss_pred eccc
Q 001363 1016 ILST 1019 (1092)
Q Consensus 1016 ~~~~ 1019 (1092)
|...
T Consensus 271 f~Ig 274 (355)
T 3amr_A 271 FRIT 274 (355)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8633
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=0.0065 Score=68.10 Aligned_cols=249 Identities=11% Similarity=0.114 Sum_probs=141.7
Q ss_pred cEEEEEECC-CCCEEEEEe-CCCEEEEEEccCCCcccceEEEc-ccccceeEEEE-------ecCCCcEEEEEEeCCC--
Q 001363 398 SVNRVVWSP-DGSLLGVAY-SKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAF-------SAPCKQISVITCGDDK-- 465 (1092)
Q Consensus 398 ~V~~l~~sp-dg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~-------s~d~~~l~l~s~~~d~-- 465 (1092)
....|+|+| ++..|.++. ..+.|++.|.+++.... +.... ........++| +++|++ |+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 467899999 455555554 44678888888764322 11110 12235889999 999984 44443332
Q ss_pred -----cEEEEECCC-Ccee-----EEEecCCcCeEEEeecccCCccEEEEEecCCeEEEEEcC-------CCCc------
Q 001363 466 -----TIKVWDAVT-GSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------SLGA------ 521 (1092)
Q Consensus 466 -----~i~vwd~~~-~~~~-----~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-------~~~~------ 521 (1092)
.|.+.+... |... ..+.... ....+++++. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 266666443 2221 2222212 2345566443 45667777788899999987 4432
Q ss_pred -----e-EEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC--CCCeEE--EEEeecc------------ccC
Q 001363 522 -----R-VDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGAIK--RTYQGLQ------------LQH 578 (1092)
Q Consensus 522 -----~-~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~--~~~~~~--~~~~~~~------------~~~ 578 (1092)
. ..+ .........++|+|+|+.|+.+-. ....|+.++. .++... ..+.+.. ..-
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 112 222345678999999997666532 3567888554 344321 2333320 001
Q ss_pred CceE-EEEEc-------CCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC----------------------CCCCCceE
Q 001363 579 NSVS-VVHFD-------TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----------------------GLPENPRI 628 (1092)
Q Consensus 579 ~~v~-~~~~~-------~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v 628 (1092)
.... .++.. +++..+++-..+..|+.++ .+|. +.++...+ .......+
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 2234 45554 4556666666788899998 4554 44443221 01224578
Q ss_pred EEccC-CCEEEEEeCCCeEEEEECCCCce
Q 001363 629 CFNKN-GTLLAVIANENRIKILETPESNS 656 (1092)
Q Consensus 629 ~~s~~-~~~l~~~~~dg~i~iw~~~~~~~ 656 (1092)
+++++ |.++++=+.++.|+.+++.....
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 88886 76666666678888888876543
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.79 E-value=0.024 Score=68.22 Aligned_cols=251 Identities=9% Similarity=-0.039 Sum_probs=148.6
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~- 414 (1092)
.-+|.+..+.. +++.+ ....|+..++....... +......+..++|.+.+..|+.+
T Consensus 386 ~~~C~~~~~~p-~Ll~a--n~~~Ir~i~l~~~~~~~--------------------l~~~~~~~~gl~~d~~~~~lY~sD 442 (791)
T 3m0c_C 386 TKACKAVGSIA-YLFFT--NRHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSD 442 (791)
T ss_dssp CCCCEETTSCC-EEEEE--CBSSEEEECTTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEE
T ss_pred Cceeeeccccc-ccccc--cccceeEeeccCCccee--------------------eecCCCceEEEeecccCCeeEEee
Confidence 33455544433 23333 23567777777654332 22234567899999966665554
Q ss_pred eCCCEEEEEEccCCCcc-cceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEee
Q 001363 415 YSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1092)
Q Consensus 415 ~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 493 (1092)
...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++........+.........|++
T Consensus 443 ~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaV 521 (791)
T 3m0c_C 443 LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV 521 (791)
T ss_dssp TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEE
T ss_pred ccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEE
Confidence 45678998988753210 111123323455778999988865 5566667889999998755443334444455788888
Q ss_pred cccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001363 494 HAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 494 ~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
.+.. +.++++-... +.|.+.+++...........-.....|++.+.+..|+.+-. +...|...++........+.
T Consensus 522 Dp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~---~~~~I~~~d~dG~~~~~v~~ 597 (791)
T 3m0c_C 522 DPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILE 597 (791)
T ss_dssp ETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEE
T ss_pred ecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---CCCcEEEEecCCCceEEEec
Confidence 6542 3344443333 67888888765554444444457889999988888877643 25679999986554444443
Q ss_pred eccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEe
Q 001363 573 GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTID 617 (1092)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~ 617 (1092)
... ......++++. +.+|+.+ ...+.|...|..+|+.+..+.
T Consensus 598 ~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 598 DEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp CTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 321 11234556653 3355544 456778888877776665554
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.73 E-value=0.017 Score=64.69 Aligned_cols=253 Identities=13% Similarity=0.111 Sum_probs=142.8
Q ss_pred CceEEeecC-CCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE-------CCC
Q 001363 336 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-------SPD 407 (1092)
Q Consensus 336 ~V~~v~~sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~-------spd 407 (1092)
....|+|+| ++..|+++....+.|++.|..++........ -...-.....++| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~----------------~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI----------------NTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC----------------TTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc----------------CccccCCCcEEEEeecccccCCC
Confidence 467899999 3555666665557788899887765532100 0112246899999 999
Q ss_pred CCEEEEEeCCC-------EEEEEEccC-CCccc-c-eEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECC----
Q 001363 408 GSLLGVAYSKH-------IVQLYAYHG-GSDAR-Q-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---- 473 (1092)
Q Consensus 408 g~~las~~~d~-------~i~iwd~~~-~~~~~-~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---- 473 (1092)
|++|+++...+ .|.+.+... |.... . ...+... .....++++|++.. ++++-..++.|..+|++
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99777765543 366666444 22211 0 0122211 23457889996554 56667778889999987
Q ss_pred ---CCce-----------eEE-Ee-cCCcCeEEEeecccCCccE-EEEEecCCeEEEEEcCCCCce----EEecCC---C
Q 001363 474 ---TGSR-----------TYS-FE-GHGAPVYSLCPHAKENIHF-IFSISVDGKIKAWLYDSLGAR----VDYDAP---G 529 (1092)
Q Consensus 474 ---~~~~-----------~~~-~~-~~~~~v~~i~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~----~~~~~~---~ 529 (1092)
++.. ... +. +.......++|++ ++.+ .++-+....|+.++.+..... ..+.+. .
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 5553 122 21 1234457888855 5564 555566788988776543211 111110 0
Q ss_pred ------------CceE-EEEEc-------cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-------------
Q 001363 530 ------------LGCT-RMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL------------- 576 (1092)
Q Consensus 530 ------------~~i~-~~~~s-------~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~------------- 576 (1092)
.... .++.. ++|...++-.. +..|+.++ .+|. +.++.+...
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~----N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL----NFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG----GTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC----CCEEEEEe-CCCC-EEEEecccccccccCccccccC
Confidence 1123 44554 44554444332 66799998 4553 445544310
Q ss_pred --------cCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEE
Q 001363 577 --------QHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLT 614 (1092)
Q Consensus 577 --------~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~ 614 (1092)
.-.....+++.++ +..+++=..+..|+.++++......
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 0134667888886 5544555566778888776654443
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.73 E-value=0.01 Score=62.63 Aligned_cols=193 Identities=12% Similarity=0.136 Sum_probs=120.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecccC--Ccc---EEEEEe-c--CCeEEEEEcCCCC-ceEEecC
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE--NIH---FIFSIS-V--DGKIKAWLYDSLG-ARVDYDA 527 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~---~l~s~~-~--dg~i~vwd~~~~~-~~~~~~~ 527 (1092)
+++....++-+.+||+ +|+.++.+.. +.++.+.+.+.- +++ ++++.. . +++|++|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666667788999998 9999988864 456666554310 111 223333 3 5789999875322 2333321
Q ss_pred ------CC-CceEEEEE--ccC-CC-EEEEEecCCCCceeEEEEeC-------CCCeEEEEEeeccccCCceEEEEEcCC
Q 001363 528 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1092)
Q Consensus 528 ------~~-~~i~~~~~--s~d-g~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~ 589 (1092)
.. ..+..+|+ +|. ++ ++++... ++.+..|++ .+.+.++++... ..+..|...+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 11 45666777 674 44 3444433 456777777 234566666653 47889999999
Q ss_pred CCEEEEEeCCCcEEEEECC-----CCceEEEEeCCCCCCCCceEEE--ccCCC-EEEEEe-CCCeEEEEECC-CCceeee
Q 001363 590 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVDA 659 (1092)
Q Consensus 590 ~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~~~~-~dg~i~iw~~~-~~~~~~~ 659 (1092)
..+|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++.+ .+.++.+|+.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 9999999998777777755 3445555433222235677777 45555 566665 57899999996 4444444
Q ss_pred c
Q 001363 660 A 660 (1092)
Q Consensus 660 ~ 660 (1092)
+
T Consensus 271 f 271 (355)
T 3amr_A 271 F 271 (355)
T ss_dssp E
T ss_pred E
Confidence 4
No 301
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.63 E-value=0.082 Score=54.46 Aligned_cols=234 Identities=12% Similarity=0.097 Sum_probs=144.2
Q ss_pred eecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEE
Q 001363 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420 (1092)
Q Consensus 341 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i 420 (1092)
-.+|..+ ++|.-. ..++.|+|+++.+.+..+.+ ..+|..=.|-.+..+-++. +..|
T Consensus 73 IMnP~~~-ViALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~~L~lVT--~taV 128 (365)
T 2xzh_A 73 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNTVALVT--DNAV 128 (365)
T ss_dssp EECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCEEEEEECSSSEEEEEE--SSEE
T ss_pred eeCCCcc-EEEEec-CCeEEEechHHhhhhcceec--------------------CCccEEEEecCCCeEEEEc--CCcE
Confidence 3478877 666544 57899999999988875432 3578888887655444443 3459
Q ss_pred EEEEccCCCcccceEEEcccc----cceeEEEEecCCCcEEEEEEe------CCCcEEEEECCCCceeEEEecCCcCeEE
Q 001363 421 QLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1092)
Q Consensus 421 ~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1092)
+-|++++..... ..+..|. ..|..-..+++.+++ +++|= -.|.+.+|..+.+ .-+.++||.+....
T Consensus 129 yHWs~~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~ 204 (365)
T 2xzh_A 129 YHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQ 204 (365)
T ss_dssp EEEESSTTCCCE--EEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEE
T ss_pred EEEcccCCCCCc--eeeecchhcccceEEEEEECCCCCEE-EEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEE
Confidence 999998644322 2344443 356677778888863 33332 2467889996654 45678888877666
Q ss_pred EeecccCCc-cEEEEEec---CCeEEEEEcCCC---Cc-----eEEecCC----CCceEEEEEccCCCEEEEEecCCCCc
Q 001363 491 LCPHAKENI-HFIFSISV---DGKIKAWLYDSL---GA-----RVDYDAP----GLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 491 i~~~~~~~~-~~l~s~~~---dg~i~vwd~~~~---~~-----~~~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
+.+...+.. .+++.+.. .+.+++-++... .. ...+..+ ..-..++..|+.-..++..+. -
T Consensus 205 ~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK----~ 280 (365)
T 2xzh_A 205 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 280 (365)
T ss_dssp ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET----T
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC----C
Confidence 655332222 23333333 268999988554 11 1111111 122346677777777776654 6
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
|.+++||+.++.++..-+-.. ..|...+...+..-+++....|.|.--.++.
T Consensus 281 G~ihlyDleTgt~i~~nrIS~---d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 281 GYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp SEEEEEETTTCCEEEEEECCS---SCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred cEEEEEEcccCcEEEEeccCC---CceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 789999999999987766544 5665555555555566666666665554444
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.62 E-value=0.0073 Score=63.07 Aligned_cols=202 Identities=12% Similarity=0.093 Sum_probs=124.3
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEE-ecC----CC--CCeEEEEE---cCCCCCEEEEEeC-------
Q 001363 804 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGMD------- 864 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~d~~~lasg~~------- 864 (1092)
-..++.|.+....+..++ .++|..||...+..... +.. .. ..+..+.+ .| +++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 345788988666666665 79999999986544333 222 11 13578999 68 6777776442
Q ss_pred ------CCcEEEEEcC---CceeeEeec--ccc-----------CCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCcee
Q 001363 865 ------DSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWGIQ 921 (1092)
Q Consensus 865 ------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~spdg~~l~s~s~D-g~I~iwd~~~~~~~ 921 (1092)
+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+.....
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 6789999999 787654433 211 247889999999999998887 77666665543221
Q ss_pred eeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-eCCcEEEEEcCCcee--eeeeccCC---CCCEEEE-EEecCCCE-E
Q 001363 922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCRM-V 993 (1092)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~i~lwd~~~~~~--~~~~~~~h---~~~v~~l-~fs~dg~~-l 993 (1092)
. ..+....... ......+++.|||..|++. ..+.+..+|+.+... +..-..+. -.....+ .--.+|+. |
T Consensus 173 ~-~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 173 T-FAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp E-EEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred e-eeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence 1 1122211111 1246799999999988883 478899999884333 21110021 1233443 33357877 5
Q ss_pred EEEECCCcEEEEEcCC
Q 001363 994 FTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 994 ~t~~~Dg~i~vwd~~~ 1009 (1092)
++.+..+.+.+.+-+.
T Consensus 250 V~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 250 VGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEETTEEEEEECSST
T ss_pred EEcCCCCEEEEECCCC
Confidence 5555566555555444
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.60 E-value=0.02 Score=62.08 Aligned_cols=229 Identities=12% Similarity=0.072 Sum_probs=124.8
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEcCCce-eeEEec---CCCCCeEEEEEcCC---CCCEEEEEeC---C----CcE
Q 001363 803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STI 868 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---d~~~lasg~~---d----g~v 868 (1092)
.....++|.|||+++++-.+|.|++++ .+++ .+..+. ........++++|+ ++.+.++-+. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 346789999999977776689999987 3454 222221 12356889999993 2444443332 3 567
Q ss_pred EEEEcCCc-------eee-Eeecc-ccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCcee-----
Q 001363 869 LIYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ----- 921 (1092)
Q Consensus 869 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~spdg~~l~s~s~D-------------g~I~iwd~~~~~~~----- 921 (1092)
..|+.... +.+ ..+.. .......|+|.|||.++++.+.. |.|.-.+.+. +..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCCCC
Confidence 77877654 111 21221 11123579999999988875532 3344444332 100
Q ss_pred -eeeeeecCCCCcCCCCCceEEEEcc-CCCEEEE--EeCC--cEEEEEcCCce------------------eeeeeccCC
Q 001363 922 -TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL--VHET--HLAIYEAEELT------------------CLKQWFPIS 977 (1092)
Q Consensus 922 -~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~--~~d~--~i~lwd~~~~~------------------~~~~~~~~h 977 (1092)
...... .++. ....++|+| +|++.++ +.+. .|.+.. .+. .+..+.. .
T Consensus 187 ~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~-~ 257 (354)
T 3a9g_A 187 PNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS-E 257 (354)
T ss_dssp TTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT-C
T ss_pred CCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC-C
Confidence 000111 1111 356899999 6777776 2222 244332 221 1111101 1
Q ss_pred CCCEEEEEEe-------cCCCEEEEEECCCcEEEEEcCCC-ceEEeeccccccCCCCccccccceEEEECCCCCCEEEEE
Q 001363 978 SVPISQATFS-------CDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1049 (1092)
Q Consensus 978 ~~~v~~l~fs-------~dg~~l~t~~~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~ 1049 (1092)
......++|. .+|.++++.-..+.|...++... ....... .... ..-++..+++.| |+.++++.
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~----~~~rp~~v~~~p-DG~lyv~~ 329 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKN----VFGRLRDVVIDD-DGGILIST 329 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTT----TSCCEEEEEECT-TSCEEEEE
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccC----CCCCeeEEEECC-CCcEEEEE
Confidence 3467888883 67877777666778888888753 3321111 1111 112456788998 56666655
Q ss_pred e
Q 001363 1050 L 1050 (1092)
Q Consensus 1050 ~ 1050 (1092)
.
T Consensus 330 ~ 330 (354)
T 3a9g_A 330 S 330 (354)
T ss_dssp C
T ss_pred e
Confidence 4
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.59 E-value=0.00042 Score=83.05 Aligned_cols=234 Identities=9% Similarity=-0.016 Sum_probs=135.0
Q ss_pred CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCC----CceeEEEecCCcCeEEEe
Q 001363 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSLC 492 (1092)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~i~ 492 (1092)
.+.|+..++.+.+... +......+..++|.+.+.. ++++-...+.|+.+++.+ ......+.........++
T Consensus 385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 3467778877654322 1122335678999987763 444445567899999875 222222211112334566
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001363 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1092)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1092)
+.+. ++.++++-...+.|.+++++.......+.........+++.|++.+|+..... ..+.|+.+++..... ..+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~~-~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDI-YSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCCC-CEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCCe-eEEE
Confidence 6433 34555665667889999887654444433333455778999977766654321 125687777653322 2222
Q ss_pred eccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 573 GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 573 ~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
... ......++++|++..|+.+ +..+.|.++++........+...........+++..+ .++++....+.|..++.
T Consensus 536 ~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 536 TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred eCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 111 2456789999987666655 4667899999875444333332222223456666554 45555566789999998
Q ss_pred CCCceeeeccc
Q 001363 652 PESNSVDAAGV 662 (1092)
Q Consensus 652 ~~~~~~~~~~~ 662 (1092)
.+++.+..+..
T Consensus 613 ~~G~~~~~i~~ 623 (699)
T 1n7d_A 613 LTGSDVNLLAE 623 (699)
T ss_dssp TTEEEEECCCT
T ss_pred cCCCceEEeec
Confidence 87776666543
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.55 E-value=0.016 Score=62.90 Aligned_cols=228 Identities=11% Similarity=0.075 Sum_probs=120.3
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--eEEec---CCCCCeEEEEEcCCC---CCEEEEEeC-C-----CcEE
Q 001363 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPHD---NNVIAIGMD-D-----STIL 869 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~s~~d---~~~lasg~~-d-----g~v~ 869 (1092)
....++|.|||+++++-..|.|.+++ +++. +..+. ........++|+| + +..|.++.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 46789999999977776679999998 3432 22221 1235678999999 6 334444333 2 6788
Q ss_pred EEEcCCce-----e-eEeec---cccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCcee------
Q 001363 870 IYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------ 921 (1092)
Q Consensus 870 iwd~~~~~-----~-~~~l~---~h~~~V~~l~~spdg~~l~s~s~D-------------g~I~iwd~~~~~~~------ 921 (1092)
.|+...+. . +..+. +.......++|.|||.+.++.+.. |.|.-++.+. ...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 88877531 1 22233 111123579999999887775432 3444444432 100
Q ss_pred -----eeeeeecCCCCcCCCCCceEEEEcc-CCCEEEE-EeCCcE------EEEEcCCce------------------ee
Q 001363 922 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL-VHETHL------AIYEAEELT------------------CL 970 (1092)
Q Consensus 922 -----~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~-~~d~~i------~lwd~~~~~------------------~~ 970 (1092)
...... .++. ....++|+| +|.+.++ ...+.+ .|.-+..+. .+
T Consensus 188 ~~~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000100 0111 256789999 6777776 222221 233333222 11
Q ss_pred eeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEee-ccccccCCCCccccccceEEEECCCCCCEEEEE
Q 001363 971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1049 (1092)
Q Consensus 971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~ 1049 (1092)
..+ .+......++| .+|.++++....+.|...++......... ....++.. .-++..+++.| |+.++++.
T Consensus 262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence 111 22345677888 57777666656677777777654311000 00011111 12456788888 46655554
Q ss_pred e
Q 001363 1050 L 1050 (1092)
Q Consensus 1050 ~ 1050 (1092)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.53 E-value=0.00052 Score=82.27 Aligned_cols=205 Identities=9% Similarity=0.007 Sum_probs=123.6
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcCC----ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc
Q 001363 803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 876 (1092)
Q Consensus 803 ~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 876 (1092)
..+..++|++.+..|..+. .+.|+.+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789998887777775 47899999875 22222222222345678888635666666566789999998865
Q ss_pred eeeEeeccccCCeEEEEEcCCCCEEEEEeC-C-CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE
Q 001363 877 EVISKLEGHSKRVTGLVFSDALNILVSSGG-D-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954 (1092)
Q Consensus 877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-D-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~ 954 (1092)
.....+.........+++.|++.+|..+.. . +.|.+.++....... .+.. .. .....|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~~---~l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE---NI---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESCS---SC---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEeC---CC---CCccEEEEeccCCEEEEE
Confidence 433333333345678899997655544432 2 677777776532111 1111 11 135689999987766664
Q ss_pred --eCCcEEEEEcCCceeeeeeccC--CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeec
Q 001363 955 --HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 955 --~d~~i~lwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
..+.|..+++.... ...+... .......|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 45679999986432 2222221 1233445566444 445555566889999998888876664
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.45 E-value=0.14 Score=52.79 Aligned_cols=231 Identities=14% Similarity=0.134 Sum_probs=150.5
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceeeEeeccc
Q 001363 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 885 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 885 (1092)
+.-.+|..+.+|.-....+.++|+++.+.+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..+.+.+..|
T Consensus 71 sAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 55678999999988888999999999988887763 35666667764 45666555 56799999975 3566666655
Q ss_pred c----CCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCC-----
Q 001363 886 S----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT----- 949 (1092)
Q Consensus 886 ~----~~V~~l~~spdg~~l~s~s~-------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~----- 949 (1092)
. ..|..-..+++.++++..|- .|.+.+|..+.+ .-+..+||.. .-..+-.+|.
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~------~sQ~ieGhaa-----~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA-----SFAQFKMEGNAEEST 215 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT------EEEEECCSEE-----EEEEECCTTCSSCEE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc------ccceeeeeee-----eeEEEecCCCCCCce
Confidence 3 46777788899999886653 367889999874 3445566542 1122323332
Q ss_pred EEEEEe----CCcEEEEEcCCc---e------eeeeeccC--CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEE
Q 001363 950 RFLLVH----ETHLAIYEAEEL---T------CLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus 950 ~la~~~----d~~i~lwd~~~~---~------~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1014 (1092)
+++.+. .++++|.++... . .+..+++. -.+-..++..|+.-..+..-+.-|.|.+||+++|.++.
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 233232 257999998432 1 11111211 25556677888877788888899999999999999987
Q ss_pred eeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001363 1015 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1015 ~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
+-+. +...|... +.+. +..-++.....|.|.--.+.+.
T Consensus 296 ~nrI--------S~d~iF~t--a~~~-~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 296 MNRI--------SGETIFVT--APHE-ATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEC--------CSSCEEEE--EEEG-GGTEEEEEETTCEEEEEEECTT
T ss_pred Eecc--------CCCceEEe--cccC-CCCcEEEEcCCCEEEEEEECcc
Confidence 6651 22334422 2322 2345556668888776666543
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.43 E-value=0.17 Score=54.39 Aligned_cols=236 Identities=12% Similarity=0.093 Sum_probs=145.0
Q ss_pred EeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001363 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1092)
Q Consensus 340 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1092)
.-.+|..+ ++|.-. ..++.|+|+++.+.+..+.+ ..+|..=.|-.+. .|+-.+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~ta 126 (494)
T 1bpo_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA 126 (494)
T ss_dssp EEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SSE
T ss_pred eeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CCe
Confidence 44577776 565543 57899999999888875332 2467777776544 444443 446
Q ss_pred EEEEEccCCCcccceEEEcccc----cceeEEEEecCCCcEEEEEEe------CCCcEEEEECCCCceeEEEecCCcCeE
Q 001363 420 VQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1092)
Q Consensus 420 i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~v~ 489 (1092)
|+-|++++..... ..+..|. ..|..-..++|.+++ +++|= -.|.+.+|..+.+. -+.+.||.+...
T Consensus 127 VyHWsi~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 127 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFA 202 (494)
T ss_dssp EEEEESSSSCCCE--EEEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEE
T ss_pred eEEecccCCCCch--hheecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeeccccc-cchheeeeeeeE
Confidence 9999997644322 2344443 357777788999863 33332 34678899966554 567788887776
Q ss_pred EEeecccCCc-cEEEEEecC---CeEEEEEcCCC---C-----ceEEecCC----CCceEEEEEccCCCEEEEEecCCCC
Q 001363 490 SLCPHAKENI-HFIFSISVD---GKIKAWLYDSL---G-----ARVDYDAP----GLGCTRMAYSANGRRLFSCGTSKEG 553 (1092)
Q Consensus 490 ~i~~~~~~~~-~~l~s~~~d---g~i~vwd~~~~---~-----~~~~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~ 553 (1092)
.+.+...... .++..+... +.+++-++... . ....+..+ ..-..++..++.-..++..+.
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---- 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence 6655332222 234444332 78999988654 1 11111111 122346777887777777664
Q ss_pred ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001363 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1092)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1092)
.|.++++|+.++.++..-+-.. ..|...+......-+++....|.|.--.++..
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred CceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 7789999999999987766544 56655555555555666556665555444443
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.34 E-value=0.24 Score=53.18 Aligned_cols=232 Identities=14% Similarity=0.129 Sum_probs=151.6
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceeeEeecc
Q 001363 806 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 884 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~ 884 (1092)
.+.-.+|..+.+|.-.+.++.|+|+++...+..+.-. ..|.-=.|-. .+.|+..+ +..|+-|++.. ..+++.+..
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheec
Confidence 3567889999998888899999999999888877643 3455555653 34666555 56799999975 356666665
Q ss_pred cc----CCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC-----
Q 001363 885 HS----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ----- 948 (1092)
Q Consensus 885 h~----~~V~~l~~spdg~~l~s~s~-------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg----- 948 (1092)
|. ..|..-..++|.++++..|- .|.+.+|.++.+. -+..+||.. .-..+-.+|
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 213 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSEE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCCc
Confidence 53 46777888999999886542 4678899998743 445566543 112222233
Q ss_pred CEEEEEe----CCcEEEEEcCCc---e------eeeeeccC--CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceE
Q 001363 949 TRFLLVH----ETHLAIYEAEEL---T------CLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus 949 ~~la~~~----d~~i~lwd~~~~---~------~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~ 1013 (1092)
.+++.+. .++++|.++... . .+...++. -.+-..++..|+.-..+..-+.-|.|.+||+.+|.++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 1233232 268999998532 1 11111211 2556667888888888888999999999999999998
Q ss_pred EeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001363 1014 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
.+-+. +...|.. -+.+. ...-++.....|.|.--.+.+.
T Consensus 294 ~~nrI--------s~~~iF~--t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 294 YMNRI--------SGETIFV--TAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEC--------CSSCEEE--EEEET-TTTEEEEEETTCEEEEEEECTT
T ss_pred eeecc--------cCCceEE--ecccC-CCCcEEEEccCceEEEEEEccc
Confidence 66651 2233442 23333 2345666668888877666543
No 310
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.29 E-value=0.039 Score=59.84 Aligned_cols=237 Identities=10% Similarity=0.085 Sum_probs=125.6
Q ss_pred CeeEEEEecCCC-EEEEEeCCeEEEEEcCCceeeEE---e----cCCCCCeEEEEEcCC---CCCEEEEEeC-------C
Q 001363 804 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILT---I----MPPSPTATSLAFNPH---DNNVIAIGMD-------D 865 (1092)
Q Consensus 804 ~v~~~~~s~dg~-~l~~~sdg~i~iwd~~~~~~~~~---~----~~~~~~i~~l~~s~~---d~~~lasg~~-------d 865 (1092)
....++|.|||+ ++++-..|.|++++.. ++.... + .........++++|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 7766667999999854 332211 1 112345689999993 3444443222 2
Q ss_pred CcEEEEEcCCc-------eee-Eeec-----cccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCc
Q 001363 866 STILIYNARSS-------EVI-SKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG 919 (1092)
Q Consensus 866 g~v~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~spdg~~l~s~s~D-------------g~I~iwd~~~~~ 919 (1092)
..|..|++..+ +.+ ..+. .|. ...|+|.|||.++++.+.. |.|.-.+.+..
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~- 174 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE- 174 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-
Confidence 35666666432 111 1121 132 3569999999777776542 34555555431
Q ss_pred ee-----------eeeeeecCCCCcCCCCCceEEEEcc-CCCEEEEE--eCCcEEEEEcCCceee---------------
Q 001363 920 IQ-----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTCL--------------- 970 (1092)
Q Consensus 920 ~~-----------~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~~--~d~~i~lwd~~~~~~~--------------- 970 (1092)
.. ...... .++. ....++|.| +|++.++- .++.=.|.-+..+...
T Consensus 175 ~p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~ 248 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK 248 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred CCCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence 00 000111 1111 367899999 67666662 2222222222111110
Q ss_pred --------------eeeccCCCCCEEEEEEec-------CCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccc
Q 001363 971 --------------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCL 1029 (1092)
Q Consensus 971 --------------~~~~~~h~~~v~~l~fs~-------dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1092)
..+.-.+...+..++|.. +|.++++.-..+.|...++..++....... +. ..
T Consensus 249 ~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~~----~~ 321 (353)
T 2g8s_A 249 IPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI---LT----DR 321 (353)
T ss_dssp CTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE---SG----GG
T ss_pred cCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc---cc----CC
Confidence 000001234677888863 577777766778888888876654433221 11 11
Q ss_pred cccceEEEECCCCCCEEEEEe-CCCcEEEEec
Q 001363 1030 HVYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1060 (1092)
Q Consensus 1030 ~v~~~~~~~~p~d~~~l~~~~-~dg~v~~w~~ 1060 (1092)
.-++..+++.| |+.++++.. .+| +||.+
T Consensus 322 ~~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 322 GQRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CCceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 12567889999 567555443 344 45554
No 311
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.27 E-value=0.16 Score=53.02 Aligned_cols=170 Identities=7% Similarity=0.021 Sum_probs=109.0
Q ss_pred cCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE---CCCC
Q 001363 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW---SPDG 408 (1092)
Q Consensus 332 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~---spdg 408 (1092)
...---.+++|.+....++++.-..++|..||...+..... .+. ++.. -......+..+.| .|+|
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~~s~---------~g~~~~~~sGl~~~~~D~~g 77 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--GASS---------NGDGEQQMSGLSLLTHDNSK 77 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--TTCC---------SSCCSEEEEEEEESSSSSCC
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--Cccc---------cCCCcceeeEEEEeccCCCC
Confidence 33334567899886655667666789999999986654432 110 0000 0001124678999 6888
Q ss_pred CEEEEEe-------------CCCEEEEEEcc---CCCcccceEEEcccc-----------cceeEEEEecCCCcEEEEEE
Q 001363 409 SLLGVAY-------------SKHIVQLYAYH---GGSDARQQLEIDAHV-----------GNVNDLAFSAPCKQISVITC 461 (1092)
Q Consensus 409 ~~las~~-------------~d~~i~iwd~~---~~~~~~~~~~~~~h~-----------~~v~~~~~s~d~~~l~l~s~ 461 (1092)
+++++.. .+..|..+|+. +++.+... .+.... .....++..++|+ ..+++
T Consensus 78 rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~ 154 (334)
T 2p9w_A 78 RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAF 154 (334)
T ss_dssp EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEE
T ss_pred cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeC
Confidence 8888644 25779999999 77655422 333222 2488999999999 78888
Q ss_pred eCC-CcEEEEECCCCceeEEEecC------CcCeEEEeecccCCccEEEEEecCCeEEEEEcCCC
Q 001363 462 GDD-KTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1092)
Q Consensus 462 ~~d-~~i~vwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 519 (1092)
+.- +.|...+.+.. .+..+... ....+.|+++| ++.+|++....|.+..+|+...
T Consensus 155 s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 155 ALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred CCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 877 88877775433 33333211 12255778854 6677777777999999998853
No 312
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.23 E-value=0.11 Score=56.39 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=63.1
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC---CCE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSL 410 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~ 410 (1092)
-...+.++|.|||+ ++++ ..+|.|.+++ +++......++ +..........|+|+|| +.+
T Consensus 30 l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~--------------v~~~g~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAELS--------------VYHRGESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp CSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecce--------------EeecCCCCceeEEECCCCCCCCE
Confidence 34678999999998 5555 4558999998 44321110000 12223457889999998 566
Q ss_pred EEEEeC-C-----CEEEEEEccCCCcc--cceE-EEc---ccccceeEEEEecCCCcEEEEEE
Q 001363 411 LGVAYS-K-----HIVQLYAYHGGSDA--RQQL-EID---AHVGNVNDLAFSAPCKQISVITC 461 (1092)
Q Consensus 411 las~~~-d-----~~i~iwd~~~~~~~--~~~~-~~~---~h~~~v~~~~~s~d~~~l~l~s~ 461 (1092)
|.++.. . +.|..|+...+..- +.+. .+. +.......++|.|||. ++++.
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 655543 2 56888888754211 1111 122 1112346899999996 45543
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.22 E-value=0.044 Score=58.73 Aligned_cols=207 Identities=10% Similarity=0.040 Sum_probs=114.4
Q ss_pred cEEEEEECCCCCEEEEEe------------CCCEEEEEEccCCCc-ccceEEEcc-----cccceeEEEEec--CCCcEE
Q 001363 398 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSD-ARQQLEIDA-----HVGNVNDLAFSA--PCKQIS 457 (1092)
Q Consensus 398 ~V~~l~~spdg~~las~~------------~d~~i~iwd~~~~~~-~~~~~~~~~-----h~~~v~~~~~s~--d~~~l~ 457 (1092)
..-.++..|+|..+++++ .+|.|.++|..+... ...+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 344566788886666652 688999999974321 2222 2333 233566777766 454323
Q ss_pred EEEEeC--CCcEEEEECCCCc-e---eEEEecC-CcCeEEEeecccCCccEEEEEec-----------------CCeEEE
Q 001363 458 VITCGD--DKTIKVWDAVTGS-R---TYSFEGH-GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKA 513 (1092)
Q Consensus 458 l~s~~~--d~~i~vwd~~~~~-~---~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~-----------------dg~i~v 513 (1092)
+++-.. +.+|.+|+++.+. . +.++.+. -...+.+.+.+ +|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333333 5678888766532 2 2333332 13456777743 5666666431 234444
Q ss_pred EEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-CeE--EEEEeeccccCCceEEEEEcC-C
Q 001363 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-A 589 (1092)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~ 589 (1092)
+| ..+.. .....-.....++|+||++.|+.+.. ....|+.|++.. ++. .+.+ .. .+....+++.+ +
T Consensus 208 ~d--~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~-~~---~g~PDGi~vD~e~ 277 (355)
T 3sre_A 208 YS--PNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVL-SF---DTLVDNISVDPVT 277 (355)
T ss_dssp EC--TTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEE-EC---SSEEEEEEECTTT
T ss_pred EE--CCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEE-eC---CCCCceEEEeCCC
Confidence 44 33222 22222234678999999999888764 255788898753 333 2233 11 25678899999 5
Q ss_pred CCEEEEEeCC-CcEEEEECC--CCceEEEEe
Q 001363 590 KDQILAAGDD-HVIKIWDMN--KVQLLTTID 617 (1092)
Q Consensus 590 ~~~l~~~s~d-g~i~iwd~~--~~~~~~~~~ 617 (1092)
|+..+++..+ +.|..|+.. .+..+..+.
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 8877766533 344445544 244444444
No 314
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=97.19 E-value=0.00026 Score=56.53 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=32.8
Q ss_pred CCchhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001363 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1092)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~ 35 (1092)
|+....||.+||..||+|.||..||-+|+.||+|.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999974
No 315
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.19 E-value=0.28 Score=52.97 Aligned_cols=233 Identities=17% Similarity=0.134 Sum_probs=119.1
Q ss_pred CCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCC---CCE
Q 001363 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSL 410 (1092)
Q Consensus 334 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~ 410 (1092)
-...+.++|.|||+ ++++ ..+|.|.+++ .+|+ .....+. +..........|+|+|+ +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCCE
Confidence 34789999999997 5555 4459999887 3444 1110100 01223456889999998 555
Q ss_pred EEEEeC----C----CEEEEEEccCCC-ccc---ce-EEEc-ccccceeEEEEecCCCcEEEEEEeC-------------
Q 001363 411 LGVAYS----K----HIVQLYAYHGGS-DAR---QQ-LEID-AHVGNVNDLAFSAPCKQISVITCGD------------- 463 (1092)
Q Consensus 411 las~~~----d----~~i~iwd~~~~~-~~~---~~-~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~------------- 463 (1092)
|.++.. + ..|..|+...+. .+. .+ ..+. +.......++|.|||. ++++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 555433 2 567788876541 111 11 0121 1111346799999997 5555332
Q ss_pred CCcEEEEECCCC---------ceeEEEecCCcCeEEEeecccCCccEEEEEecCCe---EEEEEcCCCC-----------
Q 001363 464 DKTIKVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK---IKAWLYDSLG----------- 520 (1092)
Q Consensus 464 d~~i~vwd~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~---i~vwd~~~~~----------- 520 (1092)
.+.|.-.+.+.. ..+.. .++.. ...++|.+. ++.++++-..... |.+. ..+.
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~ 242 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIWS-YGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKA 242 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEEE-ECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEEE-EccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCC
Confidence 245555554321 11221 23433 345677542 3444444322221 3222 1111
Q ss_pred -------ceEEecCCCCceEEEEEc-------cCCCEEEEEecCCCCceeEEEEeCCCC-eEE--EEEeeccccCCceEE
Q 001363 521 -------ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTYQGLQLQHNSVSV 583 (1092)
Q Consensus 521 -------~~~~~~~~~~~i~~~~~s-------~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~v~~ 583 (1092)
....+.........++|. .+|+++++... .+.|...++... +.. ..+... ....+..
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~~ 316 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKN--VFGRLRD 316 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTT--TSCCEEE
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccC--CCCCeeE
Confidence 112221223356778883 56765555432 445777776643 322 122111 1256888
Q ss_pred EEEcCCCCEEEEEe
Q 001363 584 VHFDTAKDQILAAG 597 (1092)
Q Consensus 584 ~~~~~~~~~l~~~s 597 (1092)
+++.|||...++..
T Consensus 317 v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 317 VVIDDDGGILISTS 330 (354)
T ss_dssp EEECTTSCEEEEEC
T ss_pred EEECCCCcEEEEEe
Confidence 99999986555543
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.07 E-value=0.032 Score=59.19 Aligned_cols=234 Identities=13% Similarity=0.083 Sum_probs=123.7
Q ss_pred CCCEEEEEe-C------CeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEEcCCce-
Q 001363 813 NDAYLFSAS-G------GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSE- 877 (1092)
Q Consensus 813 dg~~l~~~s-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~- 877 (1092)
++.+++.|+ . ..+.+||..+.+-.. .+........++. . ++.+++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--L-HDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--E-TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--E-CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 445555554 1 358899988765322 2221111222222 2 56788888765 368999988765
Q ss_pred ----eeEeeccccCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCC
Q 001363 878 ----VISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 948 (1092)
Q Consensus 878 ----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 948 (1092)
.+..+......-..+.+ ++++++.|+.++ .+.+||..+.+......+. ... ....+...++
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r------~~~~~~~~~~ 160 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ--TAR------EGAGLVVASG 160 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS--SCC------BSCEEEEETT
T ss_pred CeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC--CCc------ccceEEEECC
Confidence 22222222222222222 677788777543 5888998886644432221 111 1112222367
Q ss_pred CEEEEE-eC-----CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEeec
Q 001363 949 TRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus 949 ~~la~~-~d-----~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~ 1017 (1092)
++++.| .+ ..+.+||..+.+-...-... .......+...+++.++.|+.+ ..+.+||+.+.+....-
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~- 238 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA-TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT- 238 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC-
T ss_pred EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC-cccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC-
Confidence 766663 32 46899998876544321111 1111112223477788888764 46899999888654221
Q ss_pred cccccCCCCccccccceEEEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCCCC
Q 001363 1018 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPD 1073 (1092)
Q Consensus 1018 ~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~~ 1073 (1092)
..+.. ....+++.. ++..++.|+.++ .|.+||+. ..+|...++.
T Consensus 239 ---~~p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~ 287 (301)
T 2vpj_A 239 ---SMTTP-----RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPI--IDSWEVVTSM 287 (301)
T ss_dssp ---CCSSC-----CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETT--TTEEEEEEEE
T ss_pred ---CCCCc-----ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCC--CCeEEEcCCC
Confidence 12221 111122222 357888887663 56777774 4568776543
No 317
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.07 E-value=0.029 Score=60.29 Aligned_cols=109 Identities=13% Similarity=0.122 Sum_probs=82.2
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC----CCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee----
Q 001363 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---- 878 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~---- 878 (1092)
......+|.-++.+.++.||.-++......+.+... -..|..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 445667889999999999999998855555555443 23688999999 899999876 55799988874321
Q ss_pred --------eEeecc------ccCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCC
Q 001363 879 --------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 879 --------~~~l~~------h~~~V~~l~~spd---g~~l~s~s~Dg~I~iwd~~~ 917 (1092)
...+.- ...+|..+.|+|- +..|++-..|++|++||+..
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 112221 2567999999995 56899999999999999986
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.05 E-value=0.044 Score=58.24 Aligned_cols=233 Identities=10% Similarity=0.011 Sum_probs=124.4
Q ss_pred CEEEEEe---CCeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCC----CcEEEEEcCCcee--eEeec
Q 001363 815 AYLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEV--ISKLE 883 (1092)
Q Consensus 815 ~~l~~~s---dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~--~~~l~ 883 (1092)
.+++.|+ ...+.+||..+.+-.. .+........++.+ ++.+++.|+.+ ..+.+||..+.+- +..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3444454 2569999988765322 22222222233333 56788888765 5788999988642 22232
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-e-
Q 001363 884 GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H- 955 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~- 955 (1092)
.....-..+.+ ++++++.|+.+ ..+.+||..+.+......+... . ....+..-++++++.+ .
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r------~~~~~~~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ--R------CSHGMVEANGLIYVCGGSL 159 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC--C------BSCEEEEETTEEEEECCEE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC--c------ceeEEEEECCEEEEECCCC
Confidence 21122222222 67788888765 4588999988664332221111 1 1112222366666663 2
Q ss_pred --------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEeecccccc
Q 001363 956 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYL 1022 (1092)
Q Consensus 956 --------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~ 1022 (1092)
-..+.+||..+.+-...-... .......+..-++++++.|+.+ ..+.+||+.+.+.... ...
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~ 234 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMI-EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV----SPM 234 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC----CCC
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCcc-chhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC----CCC
Confidence 345889999877543321111 1111112223377788877754 3588999988754422 122
Q ss_pred CCCCccccccceEEEECCCCCCEEEEEeCC-----CcEEEEecCCCCCccccCCCCC
Q 001363 1023 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus 1023 ~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-----g~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
+.. ....+++.. ++.+++.|+.+ ..+.+||+ ...+|...++..
T Consensus 235 p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~ 282 (306)
T 3ii7_A 235 PWK-----GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT--ETDKWVANSKVR 282 (306)
T ss_dssp SCC-----BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET--TTTEEEEEEEEE
T ss_pred CCC-----ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC--CCCeEEeCCCcc
Confidence 221 111222222 36788888865 45777887 445688765443
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.01 E-value=0.037 Score=58.67 Aligned_cols=236 Identities=11% Similarity=-0.002 Sum_probs=119.7
Q ss_pred CCCEEEEEe-CC-----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----CcEEEEECCCC
Q 001363 407 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 475 (1092)
Q Consensus 407 dg~~las~~-~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~ 475 (1092)
++..++.|+ .+ ..+.+||..+++-.. ...+... .....+...+++ +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~--r~~~~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRK--RRYVASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSC--CBSCEEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChh--hccccEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 32 358889988754211 1111111 111122223555 66667654 46899998887
Q ss_pred c---eeEE--EecCCcCeEEEeecccCCccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001363 476 S---RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1092)
Q Consensus 476 ~---~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 545 (1092)
+ -... +.........+.+ ++.+++.|+.++ .+.+||..+.+-...-..........+...+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 3222 1111111112222 456777776543 577888776543322221211111122223677777
Q ss_pred EEecCCC-CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeCC
Q 001363 546 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG 619 (1092)
Q Consensus 546 ~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~ 619 (1092)
.++.++. ....+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-...
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 7665332 13458999998876544321111 1112222222 45566666643 46899999987765543322
Q ss_pred CCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECCCCce
Q 001363 620 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESNS 656 (1092)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~ 656 (1092)
.. .....+..-++++++.|+.+ ..+.+||..+.+.
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 21 12222233367777777765 4577888877643
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.94 E-value=0.089 Score=55.71 Aligned_cols=222 Identities=10% Similarity=0.052 Sum_probs=117.1
Q ss_pred CeEEEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEEcCCcee--eEeeccccCCeEEEE
Q 001363 823 GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEV--ISKLEGHSKRVTGLV 893 (1092)
Q Consensus 823 g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~--~~~l~~h~~~V~~l~ 893 (1092)
..+..||..+.+-... +......-..+.+ ++.+++.|+.++ .+.+||..+.+- +..+......-..+.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence 4588899887653222 2211111222222 567888887553 688999887642 222222112222222
Q ss_pred EcCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-e-------CCcEE
Q 001363 894 FSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-------ETHLA 960 (1092)
Q Consensus 894 ~spdg~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-------d~~i~ 960 (1092)
+ ++++++.|+.++ .+.+||+.+.+......+.. ... -.+++ .-++++++.+ . -..+.
T Consensus 107 ~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~-----~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 107 L--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT--RRS-----SVGVG-VVGGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp E--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS--CCB-----SCEEE-EETTEEEEECCEETTTTEECCCEE
T ss_pred E--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC--ccc-----CceEE-EECCEEEEEeCCCCCCCccccEEE
Confidence 2 677888887654 47788888766433222111 111 11222 2366666663 2 23588
Q ss_pred EEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEeeccccccCCCCccccccceE
Q 001363 961 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus 961 lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
+||..+.+-...-.......-.+ +...++++++.|+.+ ..+.+||+.+.+....- ..+.. ....+
T Consensus 177 ~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~~~~-----r~~~~ 246 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMSTRRSGAG-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA----DMNMC-----RRNAG 246 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC----CCSSC-----CBSCE
T ss_pred EEeCCCCcEEECCCCcccccccc-EEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC----CCCCc-----cccCe
Confidence 99998765433211111111112 223377888888765 36889999887554221 12211 11112
Q ss_pred EEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCC
Q 001363 1036 IAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus 1036 ~~~~p~d~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~ 1071 (1092)
++.. ++..++.|+.++ .+.+||+. ..+|...+
T Consensus 247 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~ 283 (302)
T 2xn4_A 247 VCAV--NGLLYVVGGDDGSCNLASVEYYNPT--TDKWTVVS 283 (302)
T ss_dssp EEEE--TTEEEEECCBCSSSBCCCEEEEETT--TTEEEECS
T ss_pred EEEE--CCEEEEECCcCCCcccccEEEEcCC--CCeEEECC
Confidence 2222 367888888664 47888884 45698775
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.86 E-value=0.072 Score=56.53 Aligned_cols=235 Identities=8% Similarity=-0.026 Sum_probs=119.3
Q ss_pred CEEEEEeC--CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC----CcEEEEECCCCceeEEEe
Q 001363 409 SLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE 482 (1092)
Q Consensus 409 ~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~ 482 (1092)
.+++.|+. ...+.+||..+++-.. ...+......-.. ..-+++ +++.|+.+ ..+.+||+.+++-...-.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~--~~~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAAC--VFWDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEE--EEETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEE--EEECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555554 3468899988754211 1111111111112 223555 66777654 578899988876433221
Q ss_pred cCC--cCeEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC-
Q 001363 483 GHG--APVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG- 553 (1092)
Q Consensus 483 ~~~--~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~- 553 (1092)
... .....+.+ ++.+++.|+.+ ..+.+||..+.+-...-..+.......+...+++.++.++.+...
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTT
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCC
Confidence 111 11112222 45677777765 357888887654333222221111112222466777776654332
Q ss_pred ----ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeCCCCCCC
Q 001363 554 ----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPE 624 (1092)
Q Consensus 554 ----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 624 (1092)
...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-........
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred cccccceEEEeCCCCCeEEECCCccc-hhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 3558899998876543322111 1122222222 45566666543 4688999988765543222221111
Q ss_pred CceEEEccCCCEEEEEeCC-----CeEEEEECCCCcee
Q 001363 625 NPRICFNKNGTLLAVIANE-----NRIKILETPESNSV 657 (1092)
Q Consensus 625 v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~ 657 (1092)
...+.+ ++++++.|+.+ ..+.+||..+.+..
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 222222 67788888753 56888888876443
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.84 E-value=0.088 Score=55.72 Aligned_cols=235 Identities=12% Similarity=0.037 Sum_probs=117.0
Q ss_pred CCEEEEEeCC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCC-----CcEEEEECCCCcee
Q 001363 408 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT 478 (1092)
Q Consensus 408 g~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~~~~ 478 (1092)
+..++.|+.+ ..+..||+.+++- .....+......- +++ .-+++ +++.|+.+ ..+.+||..+.+-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCRA-GMV-YMAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBSC-EEE-EETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCcccccc-eEE-EECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455555533 3478888877531 1111111111111 122 22555 66677654 35889998877543
Q ss_pred EEEe--cCCcCeEEEeecccCCccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001363 479 YSFE--GHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1092)
Q Consensus 479 ~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~ 551 (1092)
..-. ........+.+ ++.+++.|+.++ .+.+||+.+.+-...-..........+..-+++.++.++.+.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 166 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV 166 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCC
Confidence 2211 11111112222 456777777653 466777765543322111111111112223667777766543
Q ss_pred CC---ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeCCCCCC
Q 001363 552 EG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLP 623 (1092)
Q Consensus 552 ~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 623 (1092)
.. ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 32 3458899998876544321111 1122222222 45666666643 4689999988766544322211
Q ss_pred CCceEEEccCCCEEEEEeCCC-----eEEEEECCCCce
Q 001363 624 ENPRICFNKNGTLLAVIANEN-----RIKILETPESNS 656 (1092)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~ 656 (1092)
.....+..-++++++.|+.++ .+.+||..+.+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 112222233677777777653 478888887643
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.83 E-value=0.24 Score=53.55 Aligned_cols=236 Identities=8% Similarity=-0.017 Sum_probs=117.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC--cccceE-EEcccccceeEEEEecC---CCcEEEEEEeC-------
Q 001363 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQL-EIDAHVGNVNDLAFSAP---CKQISVITCGD------- 463 (1092)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~-~~~~h~~~v~~~~~s~d---~~~l~l~s~~~------- 463 (1092)
.....|+|.|||+.|.++...|.|++++..... .+.... ...........++|+|+ +.. +.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence 457889999999944455577899999854321 111000 01112345688999996 554 3333222
Q ss_pred CCcEEEEECCCC--c--eeEE-EecC------CcCeEEEeecccCCccEEEEEec-------------CCeEEEEEcCCC
Q 001363 464 DKTIKVWDAVTG--S--RTYS-FEGH------GAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL 519 (1092)
Q Consensus 464 d~~i~vwd~~~~--~--~~~~-~~~~------~~~v~~i~~~~~~~~~~l~s~~~-------------dg~i~vwd~~~~ 519 (1092)
...|..|+...+ . .... +... ...-..++|. +||.+.++.+. .|.|.-++.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666666533 1 1111 1111 1113457774 46655555433 245666665532
Q ss_pred C------------ceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEE--------eCCCC-------------
Q 001363 520 G------------ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEW--------NESEG------------- 565 (1092)
Q Consensus 520 ~------------~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iw--------d~~~~------------- 565 (1092)
- ....+.........++|.| +|+..+ +-...++...|.+. ....+
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~-~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWL-NEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEE-EEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEE-EecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 0 1111111223567899999 555444 33221111122221 11000
Q ss_pred --------eEEEEEeeccccCCceEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCceEEEEeC-CCCCCCCceEE
Q 001363 566 --------AIKRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRIC 629 (1092)
Q Consensus 566 --------~~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~ 629 (1092)
..+..+.. ......+.|.. ++.++++.-..+.|...++..++....... ......+..++
T Consensus 254 ~~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR 329 (353)
T ss_dssp BSSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred CCCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence 00001111 13456677753 456666665777788888776554433221 11123578899
Q ss_pred EccCCCEEEEE
Q 001363 630 FNKNGTLLAVI 640 (1092)
Q Consensus 630 ~s~~~~~l~~~ 640 (1092)
+.|||.++++.
T Consensus 330 ~~pdG~lyv~t 340 (353)
T 2g8s_A 330 TGPDGYLYVLT 340 (353)
T ss_dssp ECTTSCEEEEE
T ss_pred ECCCCcEEEEE
Confidence 99999866654
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.82 E-value=0.13 Score=54.79 Aligned_cols=229 Identities=10% Similarity=0.072 Sum_probs=120.7
Q ss_pred eCCeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeC-----C------CcEEEEEcCCcee--eEeecccc
Q 001363 821 SGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEV--ISKLEGHS 886 (1092)
Q Consensus 821 sdg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~-----d------g~v~iwd~~~~~~--~~~l~~h~ 886 (1092)
++..+.+||..+.+-.. .+..+.......+... ++.+++.|+. . ..+.+||..+.+- +..+....
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 34678999998776432 2222223333334444 6778888874 1 1378889887652 22222111
Q ss_pred CCeEEEEEcCCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-e-C
Q 001363 887 KRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E 956 (1092)
Q Consensus 887 ~~V~~l~~spdg~~l~s~s~D--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-d 956 (1092)
..-..+.+ ++++++.|+.+ ..+.+||..+.+......+.. . .....+...++++++.| . +
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~------r~~~~~~~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--V------VYGHTVLSHMDLVYVIGGKGS 159 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--C------CBSCEEEEETTEEEEECCBCT
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--c------ccceeEEEECCEEEEEeCCCC
Confidence 11122222 66777777743 358899998865433221111 1 11122333566666664 3 2
Q ss_pred -----CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCC-----cEEEEEcCCCceEEeeccccccCCCC
Q 001363 957 -----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRILSTAYLRPTT 1026 (1092)
Q Consensus 957 -----~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 1026 (1092)
+.+.+||..+.+-...-... .......+..-+++.++.|+.++ .+.+||+.+.+....- ..+..
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~- 233 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE----AFPQE- 233 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC----CCSSC-
T ss_pred CCcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECC----CCCCc-
Confidence 46999999876543321111 11111122234778888888664 4888999887544221 12221
Q ss_pred ccccccceEEEECCCCCCEEEEEeCCC--------------cEEEEecCCCCCccccCCCCC
Q 001363 1027 SCLHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus 1027 ~~~~v~~~~~~~~p~d~~~l~~~~~dg--------------~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
....+++.. ++.+++.|+.++ .+.+||+ ...+|...+|..
T Consensus 234 ----r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~ 287 (315)
T 4asc_A 234 ----RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNE--EEKKWEGVLREI 287 (315)
T ss_dssp ----CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET--TTTEEEEEESCS
T ss_pred ----ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecC--CCChhhhhccCC
Confidence 111122222 357888888643 3566676 455698775544
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.72 E-value=0.82 Score=48.65 Aligned_cols=99 Identities=11% Similarity=0.125 Sum_probs=58.5
Q ss_pred eeEEEEecCCCEEEEEe--CCeEEEEEcCCcee------------------eEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 001363 805 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGMD 864 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~d~~~lasg~~ 864 (1092)
...++|.|+|.+.++-. ++.-.|--+..+.. +..+..+......++|.. +.++.....
T Consensus 204 p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~ 281 (347)
T 3das_A 204 VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLR 281 (347)
T ss_dssp CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEEST
T ss_pred cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeecccc
Confidence 45789999887766553 22222322222211 122222223556788874 556666666
Q ss_pred CCcEEEEEcCCcee----eEeeccccCCeEEEEEcCCCCEEEEEe
Q 001363 865 DSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG 905 (1092)
Q Consensus 865 dg~v~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~l~s~s 905 (1092)
.+.|....+..+.. ...+.+..+.+..|+..|||.++++.+
T Consensus 282 ~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 282 GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 66777777765432 233445557899999999998877654
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.69 E-value=0.093 Score=55.75 Aligned_cols=236 Identities=11% Similarity=0.049 Sum_probs=122.9
Q ss_pred ecCCCEEEEEe-----CCeEEEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeC----C-----CcEEEEEcC
Q 001363 811 SKNDAYLFSAS-----GGVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMD----D-----STILIYNAR 874 (1092)
Q Consensus 811 s~dg~~l~~~s-----dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~----d-----g~v~iwd~~ 874 (1092)
.-++.+++.|+ -..+.+||..+.+-... +....... +++.. ++.+++.|+. + ..+.+||..
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 34566666665 14589999887653322 22111122 22222 5677777775 2 368899988
Q ss_pred Ccee--eEeeccccCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccC
Q 001363 875 SSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 875 ~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 947 (1092)
+.+- +..+......-..+.+ ++++++.|+.+ ..+.+||..+.+......+. .... .-..+. -+
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~----~~~~~~--~~ 168 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML--TRRI----GVGVAV--LN 168 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS--SCCB----SCEEEE--ET
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC--cccc----ceEEEE--EC
Confidence 7642 2222221122222333 67777777644 35888999886543322111 1111 112222 26
Q ss_pred CCEEEEE-eC-----CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEee
Q 001363 948 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 948 g~~la~~-~d-----~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~ 1016 (1092)
+++++.+ .+ +.+.+||..+.+-...-.......-.+++ .-++++++.|+.+ ..+.+||+.+.+....
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~- 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV- 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE-EECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-
Confidence 6666663 22 45899998876543221111111111122 2377788888765 4689999988754421
Q ss_pred ccccccCCCCccccccceEEEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCCCC
Q 001363 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPD 1073 (1092)
Q Consensus 1017 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~~ 1073 (1092)
...+.. ....+++.. ++.+++.|+.++ .+.+||+. ..+|...++.
T Consensus 247 ---~~~p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~ 296 (308)
T 1zgk_A 247 ---APMKHR-----RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPD--TDTWSEVTRM 296 (308)
T ss_dssp ---CCCSSC-----CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT--TTEEEEEEEC
T ss_pred ---CCCCCC-----ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCC--CCEEeecCCC
Confidence 112221 111222222 367888887653 56778874 4568776443
No 327
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.65 E-value=0.73 Score=51.20 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=77.4
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEcCCcee-------------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 001363 804 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-------------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 868 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~-------------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v 868 (1092)
..-.+.++|||+++++++ +.++.++|+..... ..... -.-.....+|.+ +|....+..-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence 345688999999999997 68899999874211 11122 234567899999 78666667789999
Q ss_pred EEEEcCCc----------eeeEeeccccCCeEEEEE------cCCCCEEEEEe---CCCcE----------EEEEcCCCc
Q 001363 869 LIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQI----------FVWDVDGWG 919 (1092)
Q Consensus 869 ~iwd~~~~----------~~~~~l~~h~~~V~~l~~------spdg~~l~s~s---~Dg~I----------~iwd~~~~~ 919 (1092)
.-|++... ..+.++.-|-.+- .+.- .|||++|++.. .|+-+ .+.|+...+
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 99999764 4556666554432 2222 57999999874 45533 667776544
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.64 E-value=0.17 Score=53.94 Aligned_cols=232 Identities=9% Similarity=-0.029 Sum_probs=115.6
Q ss_pred EEEEeCCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC-----C------CcEEEEECCCCceeE
Q 001363 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTY 479 (1092)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-----d------~~i~vwd~~~~~~~~ 479 (1092)
++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||..+++-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 34444 468999998865221 22222222233333445666 5666663 1 127788988876422
Q ss_pred EEecCCcCeE--EEeecccCCccEEEEEecC--------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001363 480 SFEGHGAPVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1092)
Q Consensus 480 ~~~~~~~~v~--~i~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 549 (1092)
+.....+-. +++. . ++.+++.|+.+ ..+.+||..+.+-...-..+.......+...+++.++.++.
T Consensus 82 -~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 111111111 1111 1 44666666642 34788887765422221111222222223356666677664
Q ss_pred CC--CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEeCCCCC
Q 001363 550 SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGL 622 (1092)
Q Consensus 550 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~ 622 (1092)
.. .....+.+||+.+.+-...-.... ......++.+ ++..++.|+.++ .+.+||+.+.+....-.....
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 233 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE- 233 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 21 123458999998876543221111 1112222222 556667776544 588899988766554332222
Q ss_pred CCCceEEEccCCCEEEEEeCC--------------CeEEEEECCCCcee
Q 001363 623 PENPRICFNKNGTLLAVIANE--------------NRIKILETPESNSV 657 (1092)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~d--------------g~i~iw~~~~~~~~ 657 (1092)
.....+..-++++++.|+.+ ..+.+||..+.+..
T Consensus 234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 11222223367777777753 24677888776443
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.53 E-value=0.48 Score=50.67 Aligned_cols=175 Identities=11% Similarity=0.028 Sum_probs=97.7
Q ss_pred CCCcEEEEEcCC--ceee-Eeecc-----ccCCeEEEEEcC--CCC-EEEEE-eC--CCcEEEEEcCCCceeeeeeeecC
Q 001363 864 DDSTILIYNARS--SEVI-SKLEG-----HSKRVTGLVFSD--ALN-ILVSS-GG--DAQIFVWDVDGWGIQTCRSLQTP 929 (1092)
Q Consensus 864 ~dg~v~iwd~~~--~~~~-~~l~~-----h~~~V~~l~~sp--dg~-~l~s~-s~--Dg~I~iwd~~~~~~~~~~~~~~~ 929 (1092)
.+|.|.++|..+ ++.. -.+.+ .......+.+.+ ++. +|..+ .. +.+|.+|+++..... ...+...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-LLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-EEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE-EEEEecc
Confidence 689999999874 2211 12222 234667777765 454 34444 22 567888888764322 2234444
Q ss_pred CCCcCCCCCceEEEEccCCCEEEEEe----C------------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEE
Q 001363 930 DGVMTLAPSETHIQFHKDQTRFLLVH----E------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 993 (1092)
Q Consensus 930 ~~~~~~~~~v~~l~~s~dg~~la~~~----d------------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l 993 (1092)
.+... .....+++.++|++.++.. | ..=.+|.+..++. .... ..-.....++|||||+.|
T Consensus 160 ~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~-~~~~-~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 160 RHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVA-EGFDFANGINISPDGKYV 235 (355)
T ss_dssp CCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCC-EEEE-EEESSEEEEEECTTSSEE
T ss_pred ccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeE-EEee-cCCcccCcceECCCCCEE
Confidence 44322 3678999999999888742 1 1233444433332 2222 223467889999999887
Q ss_pred EEEE-CCCcEEEEEcCC-CceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCC
Q 001363 994 FTSF-VDGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1052 (1092)
Q Consensus 994 ~t~~-~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d 1052 (1092)
+.+. ..+.|..|++.. |.+... ... ..+ -.+=-++.++++|++.+++..+
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~~-~~~-~~~-------g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTPL-RVL-SFD-------TLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEE-EEE-ECS-------SEEEEEEECTTTCCEEEEEESC
T ss_pred EEEeCCCCeEEEEEECCCCcEecC-EEE-eCC-------CCCceEEEeCCCCcEEEEecCC
Confidence 7665 567899999864 433211 111 111 1233466776236777766544
No 330
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.35 E-value=0.034 Score=53.84 Aligned_cols=143 Identities=7% Similarity=-0.056 Sum_probs=80.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcee-----eEeeccc--cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee----e
Q 001363 855 DNNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT----C 923 (1092)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~-----~~~l~~h--~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~----~ 923 (1092)
...+|++..+| +|+.=...++.. ..+..++ =..++.++|+|+|.+.+. .+|.+.--+..+..... .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34567777777 666554444431 1111222 236789999999987777 66654444433211111 0
Q ss_pred eeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeecc------CCCCCEEEEEEecCCCEEEEEE
Q 001363 924 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
..+-.. +-. ....+.|.|+|.+.++ .|+.|+-++-.+.....-+.. .--..+..|.|.|+|.+.++.
T Consensus 80 t~IG~~-Gw~----~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 80 KKIGNG-GWN----QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp EEEECS-CGG----GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred cEeccc-ccc----cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 011000 100 1368999999999998 779888777643221110000 112467899999999877665
Q ss_pred CCCcEEEEEcC
Q 001363 998 VDGTLSIHEAS 1008 (1092)
Q Consensus 998 ~Dg~i~vwd~~ 1008 (1092)
|+.++-+...
T Consensus 153 -dg~lyr~~~P 162 (236)
T 1tl2_A 153 -GQQFYKALPP 162 (236)
T ss_dssp -TTEEEEECCC
T ss_pred -CCcEEecCCC
Confidence 7775544333
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.14 E-value=0.18 Score=53.49 Aligned_cols=238 Identities=6% Similarity=-0.053 Sum_probs=117.7
Q ss_pred CCCCCEEEEEeCC----CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC----C-----CcEEEEE
Q 001363 405 SPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----D-----KTIKVWD 471 (1092)
Q Consensus 405 spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d-----~~i~vwd 471 (1092)
.-++..++.|+.+ ..+.+||..+++-.. ...+......- +++ .-+++ +++.|+. + ..+.+||
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGC-VVGGL--LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEE-EETTE--EEEECCEEEETTEEEECCCEEEEE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEE-EECCE--EEEECCCcCCCCCCeecceEEEEC
Confidence 3456777777632 358899988754211 10111111111 122 22555 5666665 2 4688999
Q ss_pred CCCCceeEE--EecCCcCeEEEeecccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001363 472 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1092)
Q Consensus 472 ~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 544 (1092)
+.+.+-... +.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+..-+++.+
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 172 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLY 172 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred CCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEE
Confidence 887753321 1111111112222 45667776644 347778876654322211111111111122266777
Q ss_pred EEEecCCCC-ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeC
Q 001363 545 FSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDA 618 (1092)
Q Consensus 545 ~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~ 618 (1092)
+.++.++.. ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-..
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 776654322 3458899998776543221111 1122223333 55566666644 5689999988765543322
Q ss_pred CCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECCCCce
Q 001363 619 GGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESNS 656 (1092)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~ 656 (1092)
... .....+..-++++++.|+.+ ..+.+||..+.+.
T Consensus 250 p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 250 KHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp SSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 211 11112222367777777643 4577888877643
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.11 E-value=0.29 Score=60.86 Aligned_cols=232 Identities=13% Similarity=0.125 Sum_probs=140.0
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC-ceeeEeeccc
Q 001363 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 885 (1092)
Q Consensus 807 ~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 885 (1092)
+.-.+|..+.+|.-.+.++.|+|+++...+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..+++.+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 45578888888888888999999998877766653 33565556654 34555554 56799999974 3455555545
Q ss_pred ----cCCeEEEEEcCCCCEEEEEe-------CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEE---ccCCCEE
Q 001363 886 ----SKRVTGLVFSDALNILVSSG-------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF---HKDQTRF 951 (1092)
Q Consensus 886 ----~~~V~~l~~spdg~~l~s~s-------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---s~dg~~l 951 (1092)
...|..-.-+++.+|++..| -.|.+.+|+++.+ .-+..+||.. ....+.+ .+...++
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------~sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------cchhhhHhHh---hhheeccCCCCCCceEE
Confidence 45677788889999988654 3478899998874 3344555543 1111111 1112233
Q ss_pred EEEe----CCcEEEEEcCCc---ee------eeeeccC--CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEee
Q 001363 952 LLVH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus 952 a~~~----d~~i~lwd~~~~---~~------~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
+.+. .+.++|.++... .. +...++. -..-..++..|+.-..+...+.-|.|.++|+.+|..+.+-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 3232 267888888542 11 1111111 1444456777777677888888999999999999887544
Q ss_pred ccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001363 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus 1017 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
+. ++..|... +.+.. ..-++.....|.|.--.+.+
T Consensus 297 ri--------s~~~iF~~--~~~~~-~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 297 RI--------SGETIFVT--APHEA-TAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred cc--------cCCceEEe--ccCCC-CCceEEEcCCceEEEEEEcc
Confidence 41 12333322 22322 23344444777766555544
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.01 E-value=0.64 Score=49.35 Aligned_cols=227 Identities=10% Similarity=0.001 Sum_probs=110.9
Q ss_pred EEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeC----CC-------cEEEEECCCCceeEE--EecCC
Q 001363 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG 485 (1092)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d~-------~i~vwd~~~~~~~~~--~~~~~ 485 (1092)
.+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++-... +....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37889988765322 12221112222333345566 6666762 11 177888887754321 11111
Q ss_pred cCeEEEeecccCCccEEEEEecC-------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC--Ccee
Q 001363 486 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF 556 (1092)
Q Consensus 486 ~~v~~i~~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--~~~~ 556 (1092)
.....+.+ ++.+++.|+.+ ..+.+||..+.+-...-..+.......+...+++.++.++.... ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11111222 45677777754 24677777655433222222211111222356777777664221 1345
Q ss_pred EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001363 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1092)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1092)
+.+||+.+.+-...-.... ......++.+ ++..++.|+.+ ..+.+||+.+.+....-..+.. .....+..
T Consensus 177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~ 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred EEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence 8999998876543321111 1112222222 45666666633 3577899988765543222211 11222223
Q ss_pred cCCCEEEEEeCC--------------CeEEEEECCCCceee
Q 001363 632 KNGTLLAVIANE--------------NRIKILETPESNSVD 658 (1092)
Q Consensus 632 ~~~~~l~~~~~d--------------g~i~iw~~~~~~~~~ 658 (1092)
-++++++.|+.+ ..+.+||..+.+...
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 357777777653 357788887765443
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.00 E-value=0.47 Score=51.44 Aligned_cols=239 Identities=12% Similarity=0.069 Sum_probs=117.3
Q ss_pred cCCCEEEEEe--CCeEEEEEcCC----ceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeC-C---------CcEEEEEcC
Q 001363 812 KNDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNAR 874 (1092)
Q Consensus 812 ~dg~~l~~~s--dg~i~iwd~~~----~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~-d---------g~v~iwd~~ 874 (1092)
-++++++.|+ ...+.+||..+ ++.+..+. .......++.+ ++++++.|+. + ..+.+||..
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 3677777775 36799999863 33333332 11122223333 5677777776 2 468999998
Q ss_pred Ccee--eEeec-cccCCeEEEEEcCCCCEEEEEeCC---------------------------------------CcEEE
Q 001363 875 SSEV--ISKLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFV 912 (1092)
Q Consensus 875 ~~~~--~~~l~-~h~~~V~~l~~spdg~~l~s~s~D---------------------------------------g~I~i 912 (1092)
+.+- +..+. .....-.++. .++++++.|+.+ ..+.+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred CCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 7642 22222 1111122222 577888888865 46889
Q ss_pred EEcCCCceeeeeeeecCCCCcCCCCCc-eEEEEccCCCEEEEE-e------CCcEEEEEc--CCceeeeee-ccCCCCCE
Q 001363 913 WDVDGWGIQTCRSLQTPDGVMTLAPSE-THIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQW-FPISSVPI 981 (1092)
Q Consensus 913 wd~~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~s~dg~~la~~-~------d~~i~lwd~--~~~~~~~~~-~~~h~~~v 981 (1092)
||..+.+......+.... .- .+++. -++++++.+ . ...+..||+ .+.+-.... ........
T Consensus 173 yd~~~~~W~~~~~~p~~~-------~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 173 FDPSTQQWSYAGESPWYG-------TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp EETTTTEEEEEEECSSCC-------CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred EeCCCCcEEECCCCCCCC-------cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 999886644432211111 11 22222 356666653 2 235777876 443322211 11111111
Q ss_pred EEEEEecCCCEEEEEECC----------------------CcEEEEEcCCCceEEeeccccccCCCCccccccceEEEEC
Q 001363 982 SQATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1039 (1092)
Q Consensus 982 ~~l~fs~dg~~l~t~~~D----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1039 (1092)
...+...++++++.|+.+ ..+.+||+.+.+.... ..++.. .....++..
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~----r~~~~~~~~- 315 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS----GELSQG----RAYGVSLPW- 315 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE----EECSSC----CBSSEEEEE-
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC----CCCCCC----cccceeEEe-
Confidence 222334577788877742 2578899987755432 122222 111122333
Q ss_pred CCCCCEEEEEeCCC------cEEEEecCCCCCccccCCCCCcc
Q 001363 1040 PLKPTQFAVGLTNG------EVYVIEPNEPGDTWAVLPPDEIV 1076 (1092)
Q Consensus 1040 p~d~~~l~~~~~dg------~v~~w~~~~~~~~~~~~~~~~~~ 1076 (1092)
++.+++.|+.++ .|.++++ ...+|....|...+
T Consensus 316 --~~~i~v~GG~~~~~~~~~~v~~l~~--~~~~~~~~~~~~~~ 354 (357)
T 2uvk_A 316 --NNSLLIIGGETAGGKAVTDSVLITV--KDNKVTVQNLEHHH 354 (357)
T ss_dssp --TTEEEEEEEECGGGCEEEEEEEEEC---CCSCEEEC-----
T ss_pred --CCEEEEEeeeCCCCCEeeeEEEEEE--cCcEeEeeeccccc
Confidence 368889998664 2344455 55668877776643
No 335
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.98 E-value=0.35 Score=52.04 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=85.9
Q ss_pred CCeEEEEEcCCCCceEEecCC----CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe------------EEEEE
Q 001363 508 DGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------------IKRTY 571 (1092)
Q Consensus 508 dg~i~vwd~~~~~~~~~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~------------~~~~~ 571 (1092)
++.||..++.....-..+... -..+..+..+|+|++|+..+ +..|.+..+..+. ..+.+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-----~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-----DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-----SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-----CCeEEEEEecCccccCcccccccccceeEE
Confidence 356666666644333333332 23677899999999999986 4457777665221 11223
Q ss_pred eeccc---cCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc--eEEEEe-------CCCCCCCCceEEEccCCCE
Q 001363 572 QGLQL---QHNSVSVVHFDTA---KDQILAAGDDHVIKIWDMNKVQ--LLTTID-------AGGGLPENPRICFNKNGTL 636 (1092)
Q Consensus 572 ~~~~~---~~~~v~~~~~~~~---~~~l~~~s~dg~i~iwd~~~~~--~~~~~~-------~~~~~~~v~~v~~s~~~~~ 636 (1092)
.-... ...+|..+.|+|- +..|++-..|+.|++||+.... +. .+. .......|.+++|.+++-.
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcE
Confidence 22110 1367999999996 4689999999999999998622 22 232 1222245778899887776
Q ss_pred EEEEe--CCCeEEEE
Q 001363 637 LAVIA--NENRIKIL 649 (1092)
Q Consensus 637 l~~~~--~dg~i~iw 649 (1092)
|.+.+ ..|.|+-.
T Consensus 194 LYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 194 LYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEecCCCCCEEEE
Confidence 76655 66666543
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.065 Score=56.79 Aligned_cols=198 Identities=9% Similarity=0.040 Sum_probs=109.9
Q ss_pred CEEEEEeCCCcEEEEEcCCceeeEeeccc-cCCeEEEEE--cC-CCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCC
Q 001363 857 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG 931 (1092)
Q Consensus 857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~--sp-dg~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 931 (1092)
.++++++.||.|+-.|..+|+.+.++... ..++....- .+ ++..++.. +.||.|..++..+|.......+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999888754 123222110 01 23333333 589999999988875332111111111
Q ss_pred CcCCCCCceEEEE------------ccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCC------EEEEEEe-----c
Q 001363 932 VMTLAPSETHIQF------------HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----C 988 (1092)
Q Consensus 932 ~~~~~~~v~~l~~------------s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~------v~~l~fs-----~ 988 (1092)
. .-+.. +.+|..++.+.++++.-.|+.+|+.+..+..+.... ..|.... .
T Consensus 91 ~-------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 91 T-------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp T-------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred c-------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 0 00111 245554555889999999999999998765442111 1111111 1
Q ss_pred CCCEEEEEECCCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCcc
Q 001363 989 DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus 989 dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
.+..|+.+..+..+.+.+ .+|+ ...+....+.+.... ..+.. ....+. |+.. ++++.||.|..+|.......|
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~-~~~~~-~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD-VPLAL-QNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT-HHHHT-TCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccc-ccccc-cccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 245777788888888777 5564 433332223222200 00000 000111 3444 557889999988888777778
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.82 E-value=1.1 Score=47.54 Aligned_cols=224 Identities=13% Similarity=0.127 Sum_probs=115.6
Q ss_pred CeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeC----CC-------cEEEEEcCCceee--EeeccccCC
Q 001363 823 GVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD----DS-------TILIYNARSSEVI--SKLEGHSKR 888 (1092)
Q Consensus 823 g~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~----dg-------~v~iwd~~~~~~~--~~l~~h~~~ 888 (1092)
..+..||..+.+-.. .+..........+... ++.+++.|+. ++ .+.+||..+.+-. ..+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 458899988776433 2222222233333444 6788888883 12 2778888776432 222211111
Q ss_pred eEEEEEcCCCCEEEEEeCC-------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEE-e-C---
Q 001363 889 VTGLVFSDALNILVSSGGD-------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E--- 956 (1092)
Q Consensus 889 V~~l~~spdg~~l~s~s~D-------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-d--- 956 (1092)
-..+.+ ++++++.|+.+ ..+.+||..+.+......+ +.... -.++ ...++++++.| . +
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~-----~~~~-~~~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL--PIKVY-----GHNV-ISHNGMIYCLGGKTDDKK 172 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC--SSCEE-----SCEE-EEETTEEEEECCEESSSC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC--CCccc-----ccEE-EEECCEEEEEcCCCCCCC
Confidence 222222 67788888764 2478888887654332211 11111 1122 22567766663 2 1
Q ss_pred --CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCceEEeeccccccCCCCccc
Q 001363 957 --THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCL 1029 (1092)
Q Consensus 957 --~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1092)
+.+.+||..+.+-...-.......-.++ ..-+++.++.|+.+ ..+.+||+.+.+.... ...|..
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~---- 243 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM----TEFPQE---- 243 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC----CCCSSC----
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceE-EEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC----CCCCCc----
Confidence 3599999987754332111111111122 22477888888754 3477889888764421 112222
Q ss_pred cccceEEEECCCCCCEEEEEeCC--------------CcEEEEecCCCCCccccCC
Q 001363 1030 HVYPHAIAAHPLKPTQFAVGLTN--------------GEVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus 1030 ~v~~~~~~~~p~d~~~l~~~~~d--------------g~v~~w~~~~~~~~~~~~~ 1071 (1092)
....+++.. ++.+++.|+.+ ..+.+||+ ...+|....
T Consensus 244 -r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~ 294 (318)
T 2woz_A 244 -RSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED--DKKEWAGML 294 (318)
T ss_dssp -CBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEET--TTTEEEEEE
T ss_pred -ccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeC--CCCEehhhc
Confidence 111122222 35788888764 34677777 445688763
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.81 E-value=2.5 Score=44.96 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=71.0
Q ss_pred ceeeecccCCCCceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEE
Q 001363 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1092)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~ 404 (1092)
....++...-...+.|+|.|||+ ++++-...|.|++++..+++......+. .+..........|+|
T Consensus 22 ~~~~~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~-------------~v~~~g~~GllGia~ 87 (347)
T 3das_A 22 KVLRTVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVP-------------GVSPSGEGGLLGIAL 87 (347)
T ss_dssp EEEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECT-------------TCCCBTTBSEEEEEE
T ss_pred ceeEEeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccC-------------ceeecCCCCceeeEe
Confidence 34445555555889999999998 6777655799999987666542210000 012234567889999
Q ss_pred CCC---CCEEEEE-e--CCCEEEEEEccCCC----cc---cceE-EEc-ccccceeEEEEecCCCcEEEEEEe
Q 001363 405 SPD---GSLLGVA-Y--SKHIVQLYAYHGGS----DA---RQQL-EID-AHVGNVNDLAFSAPCKQISVITCG 462 (1092)
Q Consensus 405 spd---g~~las~-~--~d~~i~iwd~~~~~----~~---~~~~-~~~-~h~~~v~~~~~s~d~~~l~l~s~~ 462 (1092)
+|| +.+|.+. + .++.|.-|.+..+. .+ +.+. .+. +....-..|+|.|||. ++++.+
T Consensus 88 ~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 88 SPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp CTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred ccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 996 4445443 2 34556667766521 11 1111 121 1112346799999997 555543
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.80 E-value=0.091 Score=50.88 Aligned_cols=149 Identities=9% Similarity=0.027 Sum_probs=85.4
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee------eEee--ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001363 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------ISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~------~~~l--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~ 916 (1092)
.++.++|+| ++.+.++ .+|.++-.+..++.. -..+ .+... -.++.|.|+|.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 667999999 8887776 678777666654221 1111 01122 478999999999988 56888777653
Q ss_pred CCceeeee--eeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceee-----eeecc-CCCCCEEEEEEec
Q 001363 917 GWGIQTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----KQWFP-ISSVPISQATFSC 988 (1092)
Q Consensus 917 ~~~~~~~~--~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~-----~~~~~-~h~~~v~~l~fs~ 988 (1092)
+....... ......+-.. .+..|.|.|+|.+-++. |+.++-....++... ...+. +....-..+.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~---~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWS---GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGG---GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred cCCCCceeccccEeccCCCC---ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 32211110 0000111111 47899999999999998 888654333322110 01111 2223344567888
Q ss_pred CCCEEEEEECCCcEEEEEc
Q 001363 989 DCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus 989 dg~~l~t~~~Dg~i~vwd~ 1007 (1092)
+|...++. +| ++|..
T Consensus 192 ~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 192 VGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp TSCEEEEE--TT--EEEEE
T ss_pred CCcEEEEe--CC--eEEec
Confidence 88776655 66 44443
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.26 E-value=1.7 Score=48.47 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=63.1
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc--CCCCCceEEEEccC---CCEEEE--Ee---
Q 001363 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKD---QTRFLL--VH--- 955 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~s~d---g~~la~--~~--- 955 (1092)
-...+.|+|.|||+++++-...+.|++++..++.... ......... ........++|+|| +..|.+ +.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 3457799999999988875444568888765544322 111111110 01135779999996 555554 22
Q ss_pred ---------CCcEEEEEcCCc-------eeeee-eccCCCCCEEEEEEecCCCEEEEEEC
Q 001363 956 ---------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV 998 (1092)
Q Consensus 956 ---------d~~i~lwd~~~~-------~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~ 998 (1092)
...|.-|+...+ +.+.. +..........|+|.|||.+.++.+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 134555555322 11211 11111235788999999998777654
No 341
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.23 E-value=0.57 Score=58.38 Aligned_cols=237 Identities=12% Similarity=0.108 Sum_probs=134.3
Q ss_pred eecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCCCEE
Q 001363 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420 (1092)
Q Consensus 341 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i 420 (1092)
-.+|..+ ++|.-. ..++.|+|+++...+..+.+ ..+|..=.|-.+..+-+++ +..|
T Consensus 72 IMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~l~lVT--~~aV 127 (1630)
T 1xi4_A 72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNTVALVT--DNAV 127 (1630)
T ss_pred ccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCeeEEEc--CCeE
Confidence 3467766 566543 57899999999887765332 3467777887655443333 3459
Q ss_pred EEEEccCCCcccceEEEccc----ccceeEEEEecCCCcEEEEEEe------CCCcEEEEECCCCceeEEEecCCcCeEE
Q 001363 421 QLYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1092)
Q Consensus 421 ~iwd~~~~~~~~~~~~~~~h----~~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 490 (1092)
.-|++.+...... .+..| ...|..-..+++.+++ +++|= -.|.+.+|..+.+. .+.+.||.+....
T Consensus 128 yHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~ 203 (1630)
T 1xi4_A 128 YHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ 203 (1630)
T ss_pred EEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhhe
Confidence 9999975432221 22233 3457777788899863 33332 45788999866543 4556677666555
Q ss_pred EeecccCCccEEEE-Eec---CCeEEEEEcCCC---CceE-----EecCC----CCceEEEEEccCCCEEEEEecCCCCc
Q 001363 491 LCPHAKENIHFIFS-ISV---DGKIKAWLYDSL---GARV-----DYDAP----GLGCTRMAYSANGRRLFSCGTSKEGE 554 (1092)
Q Consensus 491 i~~~~~~~~~~l~s-~~~---dg~i~vwd~~~~---~~~~-----~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~~ 554 (1092)
+.+...+....|++ +.. .+.+++-++... .... .+..+ ..-..++..++.-..+...+. .
T Consensus 204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~ 279 (1630)
T 1xi4_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 279 (1630)
T ss_pred eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----C
Confidence 54432222222322 222 268899888653 1111 11111 112235666666666666553 6
Q ss_pred eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001363 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1092)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1092)
|.+.++|+.||.++..-+-.. .+|...+......-+++....|.|.--.+.....
T Consensus 280 G~~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred ceEEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 789999999998876544333 4454444444444455555556555555444433
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.99 E-value=1.3 Score=47.85 Aligned_cols=142 Identities=6% Similarity=-0.052 Sum_probs=67.3
Q ss_pred CcEEEEEcCCce--eeEeeccccCCeEEEEEcCCCCEEEEEeCC------CcEEEEEc--CCCceeeeeeeecCCCCcCC
Q 001363 866 STILIYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDV--DGWGIQTCRSLQTPDGVMTL 935 (1092)
Q Consensus 866 g~v~iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~l~s~s~D------g~I~iwd~--~~~~~~~~~~~~~~~~~~~~ 935 (1092)
..+.+||..+.+ .+..+......-.+++.. ++++++.|+.+ ..+.++|+ .+.+... +.......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~---~~~~~~~~-- 241 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK---LAPVSSPD-- 241 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEE---CCCSSTTT--
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEe---cCCCCCCc--
Confidence 478999998764 333332111110122222 66777777642 35777877 4433222 22211110
Q ss_pred CCCceEEEEccCCCEEEEE-eC----------------------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCE
Q 001363 936 APSETHIQFHKDQTRFLLV-HE----------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 992 (1092)
Q Consensus 936 ~~~v~~l~~s~dg~~la~~-~d----------------------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~ 992 (1092)
......+...++++++.+ .+ ..+.+||..+.+-...-... ..+....+...++++
T Consensus 242 -~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i 319 (357)
T 2uvk_A 242 -GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS-QGRAYGVSLPWNNSL 319 (357)
T ss_dssp -CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS-SCCBSSEEEEETTEE
T ss_pred -ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC-CCcccceeEEeCCEE
Confidence 011223344566666663 21 24788998866533221111 111112234458888
Q ss_pred EEEEECCC------cEEEEEcCCCceEEe
Q 001363 993 VFTSFVDG------TLSIHEASNLEVQCR 1015 (1092)
Q Consensus 993 l~t~~~Dg------~i~vwd~~~~~~~~~ 1015 (1092)
++.||.++ .|.++++++++....
T Consensus 320 ~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 320 LIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred EEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 88898653 355668888877643
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.91 E-value=2.5 Score=47.25 Aligned_cols=163 Identities=12% Similarity=0.087 Sum_probs=90.5
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCcee--eEeecc------ccCCeEEEEEcCC----CCEEEEEeC-----
Q 001363 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEG------HSKRVTGLVFSDA----LNILVSSGG----- 906 (1092)
Q Consensus 844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~V~~l~~spd----g~~l~s~s~----- 906 (1092)
.....++|.| +++++++-...+.|++++..+++. +..+.. ..+....|+|+|| +.+.++-+.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 888777544445788888765543 223321 2456779999995 444444432
Q ss_pred -------CCcEEEEEcCCC--ceeee-eeeecCCCCcCCCCCceEEEEccCCCEEEEEeCC-------------------
Q 001363 907 -------DAQIFVWDVDGW--GIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET------------------- 957 (1092)
Q Consensus 907 -------Dg~I~iwd~~~~--~~~~~-~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~------------------- 957 (1092)
...|.-+++..+ ..... .++........ .....++|.|||.+.++..|+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~--H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~ 183 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD--HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPT 183 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS--CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC--CCCCeEeECCCCeEEEEECCCCCCCccccccccccccccc
Confidence 234555655432 11111 12221111111 146899999999988873221
Q ss_pred ------------cEEEEEcC-Cce-----------eeeeeccCCCCCEEEEEEecCCCEEEEE-ECCCcEEEEEcCCC
Q 001363 958 ------------HLAIYEAE-ELT-----------CLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1010 (1092)
Q Consensus 958 ------------~i~lwd~~-~~~-----------~~~~~~~~h~~~v~~l~fs~dg~~l~t~-~~Dg~i~vwd~~~~ 1010 (1092)
.=+|+.+. .+. ....+..+| .....++|.++|++.++- +.++.-.|.-+..|
T Consensus 184 ~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G 260 (454)
T 1cru_A 184 QQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG 260 (454)
T ss_dssp HHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred cccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence 11344332 232 123333444 456789999998866653 34555566666554
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.49 E-value=5.4 Score=41.56 Aligned_cols=182 Identities=10% Similarity=0.058 Sum_probs=101.2
Q ss_pred EEeecCCCceEEEEEcCC-------------CcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEEC
Q 001363 339 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1092)
Q Consensus 339 ~v~~spdg~~llasg~~d-------------g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s 405 (1092)
+--++++|+++..+...+ ..|+..++..++... +... . +.+|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~--~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD--P--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS--C--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC--C--ccEEE
Confidence 345689998766665543 356777776665332 1111 1 23678
Q ss_pred CCCCEEEEEe--C--CCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001363 406 PDGSLLGVAY--S--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1092)
Q Consensus 406 pdg~~las~~--~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 481 (1092)
+++++|+... . ...|..-++.+.. .. .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 2 3345555655432 22 3333332 467889985 2334334678888888776544333
Q ss_pred ecCCcCeEEEeecccCCccEEEEEecCC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001363 482 EGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1092)
Q Consensus 482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i 559 (1092)
.+ ... ..++| ++.+|+-....+ .|..-+++...... +.. ..+ ..++|++++|+.+.... ...|..
T Consensus 184 ~~---~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPVV-LTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV 250 (302)
T ss_dssp CS---CEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCEE-CSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred CC---Ccc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeEE-EeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence 32 222 22333 445666555432 45555665544332 222 222 34888999998764321 356777
Q ss_pred EeCCCCe
Q 001363 560 WNESEGA 566 (1092)
Q Consensus 560 wd~~~~~ 566 (1092)
-++....
T Consensus 251 ~~~DG~~ 257 (302)
T 3s25_A 251 VKNDGTG 257 (302)
T ss_dssp EETTSCC
T ss_pred EECCCCc
Confidence 7775443
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.093 Score=55.61 Aligned_cols=194 Identities=10% Similarity=0.033 Sum_probs=104.4
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecC-CcCeEEEeeccc-CCccEEEEE-ecCCeEEEEEcCCCCceEEecCC----C
Q 001363 457 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAK-ENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G 529 (1092)
Q Consensus 457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~i~~~~~-~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~----~ 529 (1092)
+++.++.||.|.-.|.++|+.+.+++.. ..++....-... .++..++.. +.||.|..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5888999999999999999999988754 123322211111 133334343 68999999988776444332211 1
Q ss_pred CceEE---EEE-----ccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCc-----eEEEEEc-----CCCC
Q 001363 530 LGCTR---MAY-----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS-----VSVVHFD-----TAKD 591 (1092)
Q Consensus 530 ~~i~~---~~~-----s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~-----~~~~ 591 (1092)
.++.. ..+ +..+..+++++. ++.++..|..+|+.+..+...... .. ..+.... ..+.
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKN-GYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBC-C--------------------CC
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCc-ccccccccccccccccccccCCC
Confidence 11110 000 014456667665 778999999999999888643210 10 0011110 1235
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEE-----eCCCCCCCC-ceEEEccCCCEEEEEeCCCeEEEEECCCCceee
Q 001363 592 QILAAGDDHVIKIWDMNKVQLLTTI-----DAGGGLPEN-PRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1092)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v-~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 658 (1092)
.++.+..+..+.+.+ .+|+ ...+ ........+ ..-..+.|+.+ ++++.||.|.-+|..++..+.
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777777777666 3443 2111 100000000 00001234555 557889999999988887654
No 346
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=94.32 E-value=0.033 Score=44.24 Aligned_cols=54 Identities=19% Similarity=0.382 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhc
Q 001363 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLS 58 (1092)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~ 58 (1092)
++|+-+=|++||..+||.+++.+|.+|.+++.+ ...=....|+=+|..++.+-.
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQK 65 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK 65 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHH
Confidence 578999999999999999999999999998774 222346677777777766644
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.01 E-value=5.4 Score=44.46 Aligned_cols=195 Identities=11% Similarity=0.100 Sum_probs=116.5
Q ss_pred cCCCEEEEEe--CCeEEEEEcCCceeeEEecC-CCCCeEEEEEc--CCCCCEEEEEeC-------CCcE-----------
Q 001363 812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFN--PHDNNVIAIGMD-------DSTI----------- 868 (1092)
Q Consensus 812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s--~~d~~~lasg~~-------dg~v----------- 868 (1092)
.||+||..-. ..+|...++...++-+.+.- ....+..++|- | +..+++.+++ ||..
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 4789998887 47788899998887666553 34577888886 6 6667777654 2221
Q ss_pred -EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEEcCC-------Cceee---
Q 001363 869 -LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDVDG-------WGIQT--- 922 (1092)
Q Consensus 869 -~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg---------------~I~iwd~~~-------~~~~~--- 922 (1092)
...|..+.+...++.- .+....+...++|++.++.+... -+.++++.. |+...
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1123333333333221 22333456678888888776532 255665431 11110
Q ss_pred --eeeeecCC----CC-----cCCCCCceEEEEccCCCEEEEE--eCCcEEEEEcCCcee-------------eeeeccC
Q 001363 923 --CRSLQTPD----GV-----MTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI 976 (1092)
Q Consensus 923 --~~~~~~~~----~~-----~~~~~~v~~l~~s~dg~~la~~--~d~~i~lwd~~~~~~-------------~~~~~~~ 976 (1092)
..++.... +. .+.......+.++|||++++++ -+.++.++|++.... .... .
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--E 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--B
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--c
Confidence 01111111 00 0111345679999999999995 467899999974221 1111 1
Q ss_pred CCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001363 977 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus 977 h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~ 1010 (1092)
-.......+|.++|.-..|-.-|..|.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 2567788999999954455558999999999764
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=93.04 E-value=12 Score=40.73 Aligned_cols=259 Identities=11% Similarity=0.054 Sum_probs=122.6
Q ss_pred CCCeeEEEEec--CCCEEEEEeCC----eEEEEEcCCceeeEEecC--------------CCCCeEEEEEcCCC-CCEEE
Q 001363 802 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTFKTILTIMP--------------PSPTATSLAFNPHD-NNVIA 860 (1092)
Q Consensus 802 ~~~v~~~~~s~--dg~~l~~~sdg----~i~iwd~~~~~~~~~~~~--------------~~~~i~~l~~s~~d-~~~la 860 (1092)
...|.++++.| ++.+++.+..| .|...+ ..++.-..+.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35688999998 66666666554 333321 22222222111 11257789998743 44556
Q ss_pred EEeCCCcEEEEEcCCceeeEeec---c----------------ccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCce
Q 001363 861 IGMDDSTILIYNARSSEVISKLE---G----------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGI 920 (1092)
Q Consensus 861 sg~~dg~v~iwd~~~~~~~~~l~---~----------------h~~~V~~l~~spd-g~~l~s~s~Dg~I~iwd~~~~~~ 920 (1092)
++...+.|...+ +.|+.-..+. . ....|.+|.+.|. ...|..+..++.|...+-....
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~t- 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTD- 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSS-
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCC-
Confidence 566566554442 2222211111 0 1235789999873 3444444444434433222211
Q ss_pred eeeeeeec-CCC-Cc-----CCCCCceEEEEccC-CCEEEEEeCCcEEEEEcCCceeeeeeccCC-C---CCEEEEEEec
Q 001363 921 QTCRSLQT-PDG-VM-----TLAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC 988 (1092)
Q Consensus 921 ~~~~~~~~-~~~-~~-----~~~~~v~~l~~s~d-g~~la~~~d~~i~lwd~~~~~~~~~~~~~h-~---~~v~~l~fs~ 988 (1092)
...+.. ... .. .....+.++++.|+ ...|.++..+.|...+- .++....+...- . ..+..++++|
T Consensus 211 --W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 211 --WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp --CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred --ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 111111 000 00 00124788999986 35565655555555442 233322222111 1 3456788876
Q ss_pred -CCCEEEEEEC-----------CCcEEEEEcCC-CceEEeeccccccCCCCccccccceEEEECCCCCCEEEEEeCCCcE
Q 001363 989 -DCRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1055 (1092)
Q Consensus 989 -dg~~l~t~~~-----------Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v 1055 (1092)
+...|.+++. ++...+|...+ |+....+. .-++....-..+...+++++|.++..|.+++.++.|
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 3334444432 33345665554 44433332 112221000112223577888655667777766654
Q ss_pred EEEecCCCCCccccC
Q 001363 1056 YVIEPNEPGDTWAVL 1070 (1092)
Q Consensus 1056 ~~w~~~~~~~~~~~~ 1070 (1092)
|.-.+.+..|...
T Consensus 366 --~~S~D~G~tW~~~ 378 (394)
T 3b7f_A 366 --WASADEGEHWQCI 378 (394)
T ss_dssp --EEESSTTSBCEEE
T ss_pred --EEECCCCCCceEc
Confidence 5555667778754
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.49 E-value=5.5 Score=47.39 Aligned_cols=196 Identities=10% Similarity=0.104 Sum_probs=106.6
Q ss_pred cCCCEEEEEeC-----CeEEEEEcCCceeeEEe--------cCCCCCeEEEEEcCCCCCEEEEEeCCC------cEEEEE
Q 001363 812 KNDAYLFSASG-----GVISLYIVMTFKTILTI--------MPPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN 872 (1092)
Q Consensus 812 ~dg~~l~~~sd-----g~i~iwd~~~~~~~~~~--------~~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iwd 872 (1092)
.++.+++.|+. ..+.+||..+.+-...- ......-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 56677777652 45889998766433222 11112334455543 466777777543 588899
Q ss_pred cCCce--eeEeeccccCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCceeeeeeee-cCCCCcCCCCCceEEEEccC
Q 001363 873 ARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD 947 (1092)
Q Consensus 873 ~~~~~--~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~d 947 (1092)
..+.+ .+..+......- +++...++++++.||.++ .+.+||..+.......... .+.... ...++.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~----~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL----VSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC----BSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc----ceeEEEEeCC
Confidence 88753 222222111111 233324888999988765 6899999886643322100 111111 1234566665
Q ss_pred -CCEEEEE-e--C-----CcEEEEEcCCcee-----eeeecc--CCCCCEEEEEEecCCCEEEEEECC--------CcEE
Q 001363 948 -QTRFLLV-H--E-----THLAIYEAEELTC-----LKQWFP--ISSVPISQATFSCDCRMVFTSFVD--------GTLS 1003 (1092)
Q Consensus 948 -g~~la~~-~--d-----~~i~lwd~~~~~~-----~~~~~~--~h~~~v~~l~fs~dg~~l~t~~~D--------g~i~ 1003 (1092)
+++++.| . + +.+.+||..+... -..... .....-.+++...++++++.||.+ ..+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5566654 2 2 3589999987761 111111 111111123333447888888743 4599
Q ss_pred EEEcCCCceE
Q 001363 1004 IHEASNLEVQ 1013 (1092)
Q Consensus 1004 vwd~~~~~~~ 1013 (1092)
+||+.+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999988765
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.37 E-value=21 Score=39.70 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=35.9
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCcccceEEEc---------ccccceeEEEEecC
Q 001363 397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP 452 (1092)
Q Consensus 397 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~d 452 (1092)
.....|+|.|||. .|+++...|.|++++.........+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4567899999996 56666788999999754321111111221 11356788999997
No 351
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=91.26 E-value=28 Score=41.07 Aligned_cols=245 Identities=8% Similarity=0.021 Sum_probs=123.1
Q ss_pred EEe-ecCCCceEEEEEcCCC----cEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCC-----CcEEEEEECCCC
Q 001363 339 SMD-FHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-----VSVNRVVWSPDG 408 (1092)
Q Consensus 339 ~v~-~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-----~~V~~l~~spdg 408 (1092)
.+. ++||+++++++-|..| .++++|+.+++.+.. .|. .. ... .....++|..++
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~--------------~k~~~~~~~~~~~~~W~d~~ 196 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PI--------------TNSGKLLEGKFTYPTWINKD 196 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CB--------------CTTCCBCCEETCCEEEEETT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-cc--------------cccccccccccceeeEECCC
Confidence 344 8999997766655444 599999999876632 110 00 000 011234666333
Q ss_pred CEEEEE----------eCCCEEEEEEccCCCcccceEEEcccccce-eEEEEecCCCc---EEEEEEeCC---CcEEEEE
Q 001363 409 SLLGVA----------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQ---ISVITCGDD---KTIKVWD 471 (1092)
Q Consensus 409 ~~las~----------~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~d~~~---l~l~s~~~d---~~i~vwd 471 (1092)
..+++. +....|+.|.+.+...-.. ..+.+....+ .....+++++. ..+++.+.+ ..+.+.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 275 (711)
T 4hvt_A 197 TIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAK-KLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILD 275 (711)
T ss_dssp EEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCE-EEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEE
T ss_pred EEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCe-EEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEc
Confidence 333321 1124688888776532211 1233333332 34556777774 235554422 3456666
Q ss_pred CCC--CceeEEEecCCcCeEEEeecccCCccEEEEE----------ecCCeEEEEEcCCC-------CceEE-e-cCCCC
Q 001363 472 AVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSL-------GARVD-Y-DAPGL 530 (1092)
Q Consensus 472 ~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~----------~~dg~i~vwd~~~~-------~~~~~-~-~~~~~ 530 (1092)
... ++ +..+....... +.. ..++.+++.. ...+.|...++... ..... + .....
T Consensus 276 ~~~~~~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (711)
T 4hvt_A 276 TKYKNLK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE 350 (711)
T ss_dssp CSSSSCE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE
T ss_pred CCCCCCc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC
Confidence 543 33 22232111111 111 1133444422 24677888988763 12222 2 22344
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-EEEE-EeeccccCCceEEEEEcCCCCEEEE-Ee---CCCcEEE
Q 001363 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIKI 604 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~s---~dg~i~i 604 (1092)
.+..+.+..+ ..+++... ++...+.++++.++. .... +.... .+.+......+++..++. .+ .-+.+..
T Consensus 351 ~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~ 425 (711)
T 4hvt_A 351 VFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIYL 425 (711)
T ss_dssp EEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEEE
T ss_pred eEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEEE
Confidence 6777888765 34444433 446678999987775 2233 22211 145666666677655443 33 3466888
Q ss_pred EECCCCc
Q 001363 605 WDMNKVQ 611 (1092)
Q Consensus 605 wd~~~~~ 611 (1092)
+|.. ++
T Consensus 426 ~d~~-~~ 431 (711)
T 4hvt_A 426 WVKT-HE 431 (711)
T ss_dssp ECTT-SC
T ss_pred EeCC-Cc
Confidence 8876 44
No 352
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.96 E-value=16 Score=37.82 Aligned_cols=216 Identities=9% Similarity=0.100 Sum_probs=117.4
Q ss_pred ecCCCceEEEEEcC-CCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEeCC---
Q 001363 342 FHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK--- 417 (1092)
Q Consensus 342 ~spdg~~llasg~~-dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d--- 417 (1092)
|+++|.++..+... ++.|...+.+....... .. . .+--++++|++|+.+...
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l--------------------~~--~--~~~~i~~~g~~Iyy~~~~~~~ 76 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKL--------------------SN--D--TAMYINADKNYVYYVRNNNQK 76 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEE--------------------EE--E--EEEEEEECSSEEEEEEECC--
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEc--------------------cC--C--ceeeEEEcCCEEEEEECCCCc
Confidence 44567766555433 45566666554443321 11 1 133457899999887543
Q ss_pred -----------CEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEE--eCCCcEEEEECCCCceeEEEecC
Q 001363 418 -----------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGH 484 (1092)
Q Consensus 418 -----------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~--~~d~~i~vwd~~~~~~~~~~~~~ 484 (1092)
..|+..++.+++... +... .+..|+++++.++++.. .....|..-++... ....+..+
T Consensus 77 ~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~ 147 (302)
T 3s25_A 77 ITSQTFFSYDRNSLCRIKRNGHGSTV----LDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNH 147 (302)
T ss_dssp ----CCSSCCSEEEEEEETTSCCCEE----EECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESS
T ss_pred ccccceeccCCCeEEEEeCCCCcceE----eecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCC
Confidence 467777777764221 2221 12378889985333331 23445666676543 34445444
Q ss_pred CcCeEEEeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001363 485 GAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1092)
Q Consensus 485 ~~~v~~i~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~ 563 (1092)
.. ..+.+ +++.|+-.+. ...|.+-+++.......... ... ..+.|++.+|+...... ...|..-++.
T Consensus 148 ~~----~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~--~~~I~~~~ld 215 (302)
T 3s25_A 148 YL----FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNR--DNAIVHVNIN 215 (302)
T ss_dssp CC----CCSEE--ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGG--TTEEEEECSS
T ss_pred Cc----eEeeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCC--CcEEEEEECC
Confidence 32 23333 4455554444 56787777766554443332 222 34669999998765422 2467777776
Q ss_pred CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCC
Q 001363 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKV 610 (1092)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~ 610 (1092)
.+.. ..+.. ..+ ..|+|++.+|+-++. .+.|..-++...
T Consensus 216 G~~~-~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 216 NPNP-VVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp SCCC-EECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCe-EEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 6553 33322 223 347888888876543 345666666543
No 353
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.23 E-value=10 Score=44.95 Aligned_cols=202 Identities=13% Similarity=0.054 Sum_probs=103.3
Q ss_pred cCCCcEEEEEEeCC----CcEEEEECCCCceeEEE-e-----cCCcC-eEEEeecccCCccEEEEEecCC------eEEE
Q 001363 451 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-----GHGAP-VYSLCPHAKENIHFIFSISVDG------KIKA 513 (1092)
Q Consensus 451 ~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~-~-----~~~~~-v~~i~~~~~~~~~~l~s~~~dg------~i~v 513 (1092)
.++. +++.||.+ ..+.+||..+++-...- . ..... -.+++.. ..++.+++.|+.++ .+.+
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~-~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI-SRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE-TTTTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE-ccCCEEEEEcCCCCCCCccccEEE
Confidence 4455 66666643 46888998877644322 1 01111 1112221 11456777776543 4677
Q ss_pred EEcCCCCceEEecCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee--ccccCCceEEEEEcCC-
Q 001363 514 WLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA- 589 (1092)
Q Consensus 514 wd~~~~~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~- 589 (1092)
||..+.+-...-..+... -.+++...+++.++.||.+... .+.+||+.+......-.. .........++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 777664322221111111 1233333488888888765543 699999988765433220 1111122333555555
Q ss_pred CCEEEEEeC--C-----CcEEEEECCCCc------eEEEEeCCCCCCCCceEEEccCCCEEEEEeC--------CCeEEE
Q 001363 590 KDQILAAGD--D-----HVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNKNGTLLAVIAN--------ENRIKI 648 (1092)
Q Consensus 590 ~~~l~~~s~--d-----g~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~--------dg~i~i 648 (1092)
+..++.|+. + ..+.+||+.+.. .............-..++...++++++.|+. ...+.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 555566654 2 458899998877 2222221100001123333344777777774 345888
Q ss_pred EECCCCcee
Q 001363 649 LETPESNSV 657 (1092)
Q Consensus 649 w~~~~~~~~ 657 (1092)
||..+.+..
T Consensus 631 yd~~t~~W~ 639 (695)
T 2zwa_A 631 LDPLSETLT 639 (695)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 888776443
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.85 E-value=15 Score=37.64 Aligned_cols=222 Identities=13% Similarity=0.102 Sum_probs=107.3
Q ss_pred CceEEeecCCCceEEEEEcCCCcEEEEecCCCCeeEEeeeeeeecccccceeeEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001363 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1092)
Q Consensus 336 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 415 (1092)
.|..++....- .++. . ||.|..|-......+.. .......|..++...+-. ++. .
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-------------------p~~~~~~i~~ia~G~~hs-~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-------------------PAATQSGVDAIAAGNYHS-LAL-K 79 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-------------------CGGGGSCCCEEEECSSEE-EEE-E
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-------------------CccCCCCEEEEEeCCCEE-EEE-E
Confidence 45566555442 2333 3 78888887654332211 000123566666654332 233 4
Q ss_pred CCCEEEEEEccCCCcccceEEEcccccceeEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcCeEEEeecc
Q 001363 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1092)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 495 (1092)
||.|..|-.....++... ..-...|..++...+.. +.-. ||.|..|-....-.+.........|..++.-
T Consensus 80 -~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G~~hs----~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G- 149 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWAS----YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG- 149 (282)
T ss_dssp -TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEETTEE----EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC-
T ss_pred -CCEEEEeeCCCCCCCCCC---cccCCCeEEEECcCCEE----EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc-
Confidence 888999987654333211 11134677777665432 2234 8999999754322121111123446666542
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001363 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1092)
Q Consensus 496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1092)
....++ -. ||.|..|-.......-.-......|..++...+...++ . ++.|+.|-....-.+.. ...
T Consensus 150 --~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~- 216 (282)
T 3qhy_B 150 --VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTE- 216 (282)
T ss_dssp --SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGG-
T ss_pred --cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Ccc-
Confidence 222333 34 79999996654333211111123455555443322222 2 44588886543211111 000
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001363 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1092)
Q Consensus 576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1092)
....|..++..... .++.. ||.++.|-...
T Consensus 217 -~~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 217 -ALSGVSAIASGEWY--SLALK-NGKVIAWGSSR 246 (282)
T ss_dssp -GGSSCCEEEECSSC--EEEEE-TTEEEEESTTC
T ss_pred -cCCCceEEEcCCCE--EEEEE-CCEEEEecCCC
Confidence 11346666655433 33333 88888886554
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.47 E-value=22 Score=37.98 Aligned_cols=171 Identities=12% Similarity=0.093 Sum_probs=91.4
Q ss_pred cEEEEECCCC--ceeEEEecC------CcCeEEEeec-ccC----CccE-EEEEecCCeEEEEEcCCCCceEEec----C
Q 001363 466 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE----NIHF-IFSISVDGKIKAWLYDSLGARVDYD----A 527 (1092)
Q Consensus 466 ~i~vwd~~~~--~~~~~~~~~------~~~v~~i~~~-~~~----~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~----~ 527 (1092)
.|.+||+.++ +.++++.-. ...+..+.+. ..+ ++.+ .++-+..+.|.|+|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 888776532 2346777775 211 1233 3444456789999998776544331 1
Q ss_pred C--------------CCceEEEEEccC----CCEEEEEecCCCCceeEEEEe---CCCCeEEE--EEeeccccCCceEEE
Q 001363 528 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWN---ESEGAIKR--TYQGLQLQHNSVSVV 584 (1092)
Q Consensus 528 ~--------------~~~i~~~~~s~d----g~~l~~~~~~~~~~~~i~iwd---~~~~~~~~--~~~~~~~~~~~v~~~ 584 (1092)
. ...+..++++|+ ++.|+.....+. .++-.. ++...... ...+.......-..+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~---~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI---KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL 280 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS---EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC---cEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence 1 136788999998 777777664321 122221 11111111 112222001233455
Q ss_pred EEc-CCCCEEEEEeCCCcEEEEECCC-C---ceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001363 585 HFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1092)
Q Consensus 585 ~~~-~~~~~l~~~s~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1092)
++. .+|..+++--....|..|+..+ . .....+...........+.+.++|.+.+.
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEE
Confidence 675 5666666666888899999876 1 22333332223334455666555543333
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.40 E-value=26 Score=41.46 Aligned_cols=241 Identities=9% Similarity=0.011 Sum_probs=117.8
Q ss_pred ECCCCCEEEEE-eC----CCEEEEEEccCCCcccceEEEcccc-----cceeEEEEecCCCcEEEEEE----------eC
Q 001363 404 WSPDGSLLGVA-YS----KHIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAFSAPCKQISVITC----------GD 463 (1092)
Q Consensus 404 ~spdg~~las~-~~----d~~i~iwd~~~~~~~~~~~~~~~h~-----~~v~~~~~s~d~~~l~l~s~----------~~ 463 (1092)
++||+++++.+ |. -..++++|+++++.+.....-.... .....++|..++. ++++. +.
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEITSSLY 214 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCBCTTSS
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCE--EEEEeCCCCCCcCcCCC
Confidence 89999998876 22 2369999999987553211100000 0123457874443 44432 12
Q ss_pred CCcEEEEECCCCc--eeEEEecCCcCeE-EEeecccCCcc---EEEEEecC---CeEEEEEcCCCCc-eEEecCCCCceE
Q 001363 464 DKTIKVWDAVTGS--RTYSFEGHGAPVY-SLCPHAKENIH---FIFSISVD---GKIKAWLYDSLGA-RVDYDAPGLGCT 533 (1092)
Q Consensus 464 d~~i~vwd~~~~~--~~~~~~~~~~~v~-~i~~~~~~~~~---~l~s~~~d---g~i~vwd~~~~~~-~~~~~~~~~~i~ 533 (1092)
...|+.|.+-+.. -...+.+....+. +.....++... .+++.+.+ ..+.+.+.+.... ...+..+...
T Consensus 215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 292 (711)
T 4hvt_A 215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA-- 292 (711)
T ss_dssp BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC--
T ss_pred CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc--
Confidence 3468888776653 2334444444432 22222232221 35554423 3345555543222 2333322221
Q ss_pred EEEEccCCCEEEEEecC------CCCceeEEEEeCCCCe-------EEEE-EeeccccCCceEEEEEcCCCCEEEEEeCC
Q 001363 534 RMAYSANGRRLFSCGTS------KEGESFLVEWNESEGA-------IKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1092)
Q Consensus 534 ~~~~s~dg~~l~~~~~~------~~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 599 (1092)
.+..+.++.+++....+ .-..+.|...|+.++. ..+. +.... ...+..+.+..+ ..+++...+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~l~~~~~~~ 369 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA--NEVFNFISTTKD-RVFLATYDN 369 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT--TEEEEEEEECSS-CEEEEEEET
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC--CCeEEEEEEECC-EEEEEEEEC
Confidence 12344566655543221 0124568888877642 1222 32222 346778888875 566666666
Q ss_pred Cc--EEEEECCCCc-eEEE-EeCCCCCCCCceEEEccCCCEE-EEEeC---CCeEEEEECC
Q 001363 600 HV--IKIWDMNKVQ-LLTT-IDAGGGLPENPRICFNKNGTLL-AVIAN---ENRIKILETP 652 (1092)
Q Consensus 600 g~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~~~~l-~~~~~---dg~i~iw~~~ 652 (1092)
+. +.++++.++. .... +..... ..+.....++++..+ ++.+. -+.+..++..
T Consensus 370 ~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 370 VVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp TEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 64 6677776664 2223 333321 234445555665544 33332 2566666665
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=87.87 E-value=16 Score=39.18 Aligned_cols=171 Identities=13% Similarity=0.175 Sum_probs=93.5
Q ss_pred eEEEEEcCCc--eeeEEecCC------CCCeEEEEEc---CC---CCCEEEEEe-CCCcEEEEEcCCceeeEeec-----
Q 001363 824 VISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE----- 883 (1092)
Q Consensus 824 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~lasg~-~dg~v~iwd~~~~~~~~~l~----- 883 (1092)
+|.+||+.+. +.++++.-+ ...+..+++. |. ++.++..+. ..+-|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5677888888 777765432 2456778877 21 134444444 35689999999886544331
Q ss_pred ---------cc----cCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCceeee---eeeecCCCCcCCCCCceEEE
Q 001363 884 ---------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQ 943 (1092)
Q Consensus 884 ---------~h----~~~V~~l~~spd----g~~l~s~s~Dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~l~ 943 (1092)
|. ...|..|++||+ ++.|....-.+ -++|.+.+.-.... ..++.. |.......-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 11 246888999998 77777666555 35665543211100 011110 0000001223456
Q ss_pred Ec-cCCCEEEE-EeCCcEEEEEcCC-c---eeeeeeccC-CCCCEEEEEEecCCCEEEEE
Q 001363 944 FH-KDQTRFLL-VHETHLAIYEAEE-L---TCLKQWFPI-SSVPISQATFSCDCRMVFTS 996 (1092)
Q Consensus 944 ~s-~dg~~la~-~~d~~i~lwd~~~-~---~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~ 996 (1092)
+. .+|.+.++ ...+.|..|+..+ . +....+... .-..+..+.+.++|.+.+++
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 65 56776666 4778899999875 1 111221211 22346667766666655544
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.18 E-value=37 Score=36.77 Aligned_cols=206 Identities=9% Similarity=0.074 Sum_probs=93.3
Q ss_pred CCEEEEEeCCCcEEEEEcCC-ceeeEee--ccccCCeEEEEEcC--CCCEEEEEeCCC----cEEEEEcCCCceeeeeee
Q 001363 856 NNVIAIGMDDSTILIYNARS-SEVISKL--EGHSKRVTGLVFSD--ALNILVSSGGDA----QIFVWDVDGWGIQTCRSL 926 (1092)
Q Consensus 856 ~~~lasg~~dg~v~iwd~~~-~~~~~~l--~~h~~~V~~l~~sp--dg~~l~s~s~Dg----~I~iwd~~~~~~~~~~~~ 926 (1092)
...|.+|+..| +.+++... ++.-..+ ......|.+|++.| ++.+++.+ ..| .|...+ +.++ ....+
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~-D~G~--tW~~~ 96 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSD-DGGG--NWTEA 96 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEES-STTS--CCEEC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeC-CCCC--CceEC
Confidence 44677788777 55555432 2211111 11235699999998 55555544 343 333322 2222 11111
Q ss_pred ecC---CCCcC-----CCCCceEEEEcc---CCCEEEEEeCCcEEEEEcCCceeeeeecc------------------CC
Q 001363 927 QTP---DGVMT-----LAPSETHIQFHK---DQTRFLLVHETHLAIYEAEELTCLKQWFP------------------IS 977 (1092)
Q Consensus 927 ~~~---~~~~~-----~~~~v~~l~~s~---dg~~la~~~d~~i~lwd~~~~~~~~~~~~------------------~h 977 (1092)
... ..... ....|.++++.| .+.+.+.+..+.|...+ ..|+.-..... ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCC
Confidence 111 00000 001477889986 45555555556554432 22222221110 11
Q ss_pred CCCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCceEEeecc---ccccCCCCccccccceEEEECCCCCCEEEEEeCCC
Q 001363 978 SVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILS---TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG 1053 (1092)
Q Consensus 978 ~~~v~~l~fs~d-g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg 1053 (1092)
...+.+|.+.|. ...|+.+..++.|... .+.|+....+.. ..+++...........+++++|.++..+.++...|
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~ggl~~s-~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSSGGVFES-TDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEETBEEEEE-SSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CCceeEEEECCCCCCEEEEEECCCCEEEE-CCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 235788999873 3444445444443322 233433322221 01111110000112346788886567777776554
Q ss_pred cEEEEecCCCCCccccCC
Q 001363 1054 EVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus 1054 ~v~~w~~~~~~~~~~~~~ 1071 (1092)
||...+.+..|....
T Consensus 255 ---l~~s~D~G~tW~~~~ 269 (394)
T 3b7f_A 255 ---IYRMDRREGVWKRIG 269 (394)
T ss_dssp ---EEEEETTTTEEECGG
T ss_pred ---EEEeCCCCCcceECC
Confidence 344445566676553
No 359
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=82.56 E-value=1.1 Score=40.01 Aligned_cols=55 Identities=15% Similarity=0.308 Sum_probs=43.0
Q ss_pred hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccc
Q 001363 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDH 127 (1092)
Q Consensus 72 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 127 (1092)
++|.|+-+.||||+..|..++|..++.+.-..+... .+..++|..+.......++
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n 87 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHEN 87 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhC
Confidence 899999999999999999999999999866656555 7777777776665554443
No 360
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=82.33 E-value=47 Score=33.92 Aligned_cols=183 Identities=10% Similarity=0.010 Sum_probs=95.3
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEeec
Q 001363 804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883 (1092)
Q Consensus 804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 883 (1092)
.|..++...+-. ++. .+|.+..|-......+..-..-...|..++... ...+.-. ||.|+.|-....-.+..-.
T Consensus 64 ~i~~ia~G~~hs-~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 455555543322 223 377787776543222111111124688888764 3444445 9999999765532221111
Q ss_pred cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEE
Q 001363 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 963 (1092)
Q Consensus 884 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd 963 (1092)
.....|..++...+. .++ .. ||.|..|-........ .+.... ..|..++...+...++ .++.|+.|-
T Consensus 138 ~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gqlg-----~p~~~~---~~v~~i~~G~~hs~al--~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQTT-----VPAEAQ---SGVDDVAGGIFHSLAL--KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTTS-----CCGGGG---SSEEEEEECSSEEEEE--ETTEEEEEE
T ss_pred cCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCCC-----CceecC---CCeEEEEecCCEEEEE--ECCeEEEEE
Confidence 234567777765442 333 34 7999999766422111 111001 2466676655555444 689999997
Q ss_pred cCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001363 964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
....-.+.... .....|..++--.+- .++.. ||.|+.|=...
T Consensus 205 ~n~~gqlg~p~-~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 205 DNRYKQTTVPT-EALSGVSAIASGEWY-SLALK--NGKVIAWGSSR 246 (282)
T ss_dssp CCTTSTTCCCG-GGGSSCCEEEECSSC-EEEEE--TTEEEEESTTC
T ss_pred CCCCCCCCCCc-ccCCCceEEEcCCCE-EEEEE--CCEEEEecCCC
Confidence 65432222111 113456666644433 33333 89999996544
No 361
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=80.61 E-value=59 Score=33.97 Aligned_cols=158 Identities=8% Similarity=0.090 Sum_probs=90.4
Q ss_pred CCCeeEEEEec---CCCEEEEEe-CCeEEEEEcCCceee-------EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 001363 802 QEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTI-------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 870 (1092)
Q Consensus 802 ~~~v~~~~~s~---dg~~l~~~s-dg~i~iwd~~~~~~~-------~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i 870 (1092)
...|.++..-+ +..+++..+ .|.++--.+...... ..+.. .+.+..+.... +...|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 34455544333 466777776 699998887653322 22333 34555555544 4567778889999888
Q ss_pred EEcC--C---------ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee-----eeeeecCCCCcC
Q 001363 871 YNAR--S---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMT 934 (1092)
Q Consensus 871 wd~~--~---------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~-----~~~~~~~~~~~~ 934 (1092)
+... . |...-.+. ....|.++...+++..|+.++..|.++.-.+..-.... ...+...+..
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~-- 248 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR-- 248 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT--
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC--
Confidence 8776 2 11112232 34567777777777789999999999988876532211 1111111101
Q ss_pred CCCCceEEEE-ccCCCEEEEEeCCcEEEEEcCC
Q 001363 935 LAPSETHIQF-HKDQTRFLLVHETHLAIYEAEE 966 (1092)
Q Consensus 935 ~~~~v~~l~~-s~dg~~la~~~d~~i~lwd~~~ 966 (1092)
+.+..+.. ..+...++++.+|.+.-++...
T Consensus 249 --d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 249 --GRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp --CSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred --CeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 12444433 3334455557777777777653
No 362
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=79.99 E-value=2 Score=39.36 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=44.1
Q ss_pred hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCccccc
Q 001363 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE 128 (1092)
Q Consensus 72 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 128 (1092)
++|.|+-+.||||+..|...+|..+|++.-..+.....+..++|+.+.......+++
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~ 108 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNE 108 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcH
Confidence 899999999999999999999999999855544444456777787776655544433
No 363
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=79.09 E-value=83 Score=34.78 Aligned_cols=105 Identities=13% Similarity=0.130 Sum_probs=60.8
Q ss_pred CeeEEEEecCCC--EEEEEeCCeEEEEEcCCce---eeEEecC---------CCCCeEEEEEcCC---CCCEEEEEeC--
Q 001363 804 AVPCFALSKNDA--YLFSASGGVISLYIVMTFK---TILTIMP---------PSPTATSLAFNPH---DNNVIAIGMD-- 864 (1092)
Q Consensus 804 ~v~~~~~s~dg~--~l~~~sdg~i~iwd~~~~~---~~~~~~~---------~~~~i~~l~~s~~---d~~~lasg~~-- 864 (1092)
....|+|.|||. ++++-..|.|++++..... .+..+.. .......++|+|+ ++.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999995 7776668999999754221 2222211 1356788999992 2433333222
Q ss_pred C----------CcEEEEEcCC----------ceeeEeec--cccCCeEEEEEcCCCCEEEEEeCCC
Q 001363 865 D----------STILIYNARS----------SEVISKLE--GHSKRVTGLVFSDALNILVSSGGDA 908 (1092)
Q Consensus 865 d----------g~v~iwd~~~----------~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg 908 (1092)
+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 1344455532 12232222 1112357899999999988877644
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.80 E-value=8.8 Score=47.38 Aligned_cols=42 Identities=14% Similarity=0.068 Sum_probs=35.6
Q ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecccc
Q 001363 979 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus 979 ~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
..+.+++..+|..+++|-+.|+++|+|++.++.++.......
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~ 277 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQ 277 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccc
Confidence 356777888899999999999999999999999988766433
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=75.65 E-value=73 Score=32.31 Aligned_cols=193 Identities=10% Similarity=0.075 Sum_probs=105.0
Q ss_pred CCEEEEEeCCCcEEE---EEcCCceeeEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceee---eeeeec
Q 001363 856 NNVIAIGMDDSTILI---YNARSSEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQT---CRSLQT 928 (1092)
Q Consensus 856 ~~~lasg~~dg~v~i---wd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iwd~~~~~~~~---~~~~~~ 928 (1092)
...|+.-+..|.++- |++..+.....+. ....|..+.... +..+++.++.+|.++-..+..-. .. ...+..
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~l 112 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKL 112 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCC
T ss_pred CCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEec
Confidence 335555666776554 4443322111133 345666664421 56789999999999999876532 11 011111
Q ss_pred CCCCcCCCCCceEEEEccCCCEEE-EEeCCcEEEEEcCCceeee-------eeccCCCCCEEEEEEecCCCEEEEEECCC
Q 001363 929 PDGVMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAEELTCLK-------QWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus 929 ~~~~~~~~~~v~~l~~s~dg~~la-~~~d~~i~lwd~~~~~~~~-------~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg 1000 (1092)
.++ ..+..+........++ .+..|.+..++...-.... .+.-.....|..+...+++.+++..+..|
T Consensus 113 keg-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G 187 (276)
T 3no0_A 113 TEG-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKG 187 (276)
T ss_dssp CTT-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTS
T ss_pred CCC-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCC
Confidence 111 2455555554544444 4788888888764321111 01111246677776666777889999999
Q ss_pred cEEEEEcCCCceEEeec-cccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEE--EecC
Q 001363 1001 TLSIHEASNLEVQCRIL-STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV--IEPN 1061 (1092)
Q Consensus 1001 ~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~--w~~~ 1061 (1092)
.++...+..-....+-. ....+.. .+.+-.. ....+ ...++..+.+|.+.. ++..
T Consensus 188 ~~kr~~~~e~~~~~R~gkGv~~i~~---~~~lv~~-~~~~~--~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 188 RVKKISHEEIPKTNRGVKGTEVSGT---KDTLVDL-IPIKE--EVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp CEEEEEGGGSCCCCTTCCCEECCCS---SSCEEEE-EEESS--EEEEEEEETTSCEEEEEEEGG
T ss_pred cEEEeEHHHcccCCCCCcceEEEcC---CCcEEEE-EEeCC--CCEEEEEcCCCeEEEeeeCHH
Confidence 99988876544332210 0001111 2223222 12232 457888889999888 8764
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=73.36 E-value=82 Score=31.89 Aligned_cols=192 Identities=6% Similarity=0.014 Sum_probs=104.4
Q ss_pred EEecCCCEEEEEeCCeEE---EEEcCCceeeEEecCCCCCeEEEEEcCC-CCCEEEEEeCCCcEEEEEcCCc------ee
Q 001363 809 ALSKNDAYLFSASGGVIS---LYIVMTFKTILTIMPPSPTATSLAFNPH-DNNVIAIGMDDSTILIYNARSS------EV 878 (1092)
Q Consensus 809 ~~s~dg~~l~~~sdg~i~---iwd~~~~~~~~~~~~~~~~i~~l~~s~~-d~~~lasg~~dg~v~iwd~~~~------~~ 878 (1092)
..+....+++..+.|.++ +|++..++... +-.....|.++.. ++ +..+++..+.+|.++-..+..- ..
T Consensus 31 ~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~ 108 (276)
T 3no0_A 31 RVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMP 108 (276)
T ss_dssp EEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEE
T ss_pred EECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeE
Confidence 334444555555667654 34444332211 2223456666644 32 3568999999999999987653 22
Q ss_pred eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce-----eeeeeeecCCCCcCCCCCceEEEEccCCCEEEE
Q 001363 879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI-----QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 953 (1092)
Q Consensus 879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 953 (1092)
.-.++. .+.+..+........++..+..|.+..++...-.. .-...+....+ ..|.++...+++..++.
T Consensus 109 ~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~~~~ll~ 182 (276)
T 3no0_A 109 IIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNGEPYLLV 182 (276)
T ss_dssp CSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESSCSEEEE
T ss_pred EEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCCCCEEEE
Confidence 222332 34566666666667888889999888877643111 01111211111 34666555555555544
Q ss_pred -EeCCcEEEEEcCCcee-------eeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEE--EEcCCC
Q 001363 954 -VHETHLAIYEAEELTC-------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI--HEASNL 1010 (1092)
Q Consensus 954 -~~d~~i~lwd~~~~~~-------~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~v--wd~~~~ 1010 (1092)
+..|.++...+..-.. +..+ ...+.+..+....++..++..+.+|.+.. +++..-
T Consensus 183 ~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 183 ITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred EeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 7788888887653222 1111 12344555444333445666667777666 665543
No 367
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=71.70 E-value=1.1 Score=40.58 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=28.9
Q ss_pred cccchhhhHhHHhhhhhhccCCCHHHHHHHHHhhcc
Q 001363 67 RYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLK 102 (1092)
Q Consensus 67 ~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~ 102 (1092)
.+.. ++|.|+-|.||||+..| ..+|..++.+.-.
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~ 64 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSP 64 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGG
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhH
Confidence 3444 89999999999999999 9999999987444
No 368
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=70.41 E-value=1.2e+02 Score=32.54 Aligned_cols=162 Identities=14% Similarity=0.160 Sum_probs=79.4
Q ss_pred EEEEEEecCCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCE
Q 001363 737 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 816 (1092)
Q Consensus 737 i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~ 816 (1092)
+..++++......++...+|.+..|-.....+.-.+.......+ .....+ ....|..++... ...
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p----------~~v~~l----~~~~i~~va~G~-~hs 171 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRP----------RVIESL----RGIEVVDVAAGG-AHS 171 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEE----------EECGGG----TTSCEEEEEECS-SEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCC----------eEeccc----CCCeEEEEEeCc-CeE
Confidence 44456666666677777888888886433221111111000000 000001 122444444322 223
Q ss_pred EEEEeCCeEEEEEcCCc-----------eeeEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc-e------
Q 001363 817 LFSASGGVISLYIVMTF-----------KTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-E------ 877 (1092)
Q Consensus 817 l~~~sdg~i~iwd~~~~-----------~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~------ 877 (1092)
++...+|.|..|-.... .....+.. ....|..++... +....+.-..||.|+.|-.... +
T Consensus 172 ~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~ 250 (389)
T 3kci_A 172 ACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGS 250 (389)
T ss_dssp EEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSC
T ss_pred EEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCC
Confidence 33344677777754321 01111211 224577777754 3456667788999999965431 1
Q ss_pred ----eeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001363 878 ----VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916 (1092)
Q Consensus 878 ----~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~ 916 (1092)
....+.. ....|..++... .+.+....||.|..|-..
T Consensus 251 ~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 251 DGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp CCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEEEEECC
T ss_pred CCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEEEEeCC
Confidence 1112221 122466666543 344445789999999754
No 369
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.51 E-value=88 Score=38.42 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee
Q 001363 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
.+.+++..+ +..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 567778877 7889999999999999999999987664
No 370
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=61.27 E-value=1.8e+02 Score=31.18 Aligned_cols=194 Identities=8% Similarity=0.074 Sum_probs=96.2
Q ss_pred eeEEEEecCCCEEEE-EeCCeEEEEEcCCc-----------eeeEEecCC-CCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001363 805 VPCFALSKNDAYLFS-ASGGVISLYIVMTF-----------KTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIY 871 (1092)
Q Consensus 805 v~~~~~s~dg~~l~~-~sdg~i~iwd~~~~-----------~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iw 871 (1092)
+..++++......+. ..+|.|..|-.... .....+... ...|..++.. ....+....||.|+.|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEe
Confidence 444555544443333 33677777754321 111222221 2357777764 4566667889999999
Q ss_pred EcCC-ce----------eeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---------eeeeeeeecCC
Q 001363 872 NARS-SE----------VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG---------IQTCRSLQTPD 930 (1092)
Q Consensus 872 d~~~-~~----------~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~---------~~~~~~~~~~~ 930 (1092)
-... ++ ....+.. ....|..++......+.+....||.|..|-..... ......+..+.
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 263 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC
Confidence 7543 11 1111111 23357777765433566666789999999654211 01111111111
Q ss_pred CCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCcee----------eeeecc-CCCCCEEEEEEecCCCEEEEEECC
Q 001363 931 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC----------LKQWFP-ISSVPISQATFSCDCRMVFTSFVD 999 (1092)
Q Consensus 931 ~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~----------~~~~~~-~h~~~v~~l~fs~dg~~l~t~~~D 999 (1092)
+ ..|..++.... ..++...++.|+.|-....-. ...... .....|..++. -..+.+....|
T Consensus 264 ~-----~~v~~v~~G~~-hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~ 335 (389)
T 3kci_A 264 G-----LGVVKVECGSQ-FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTED 335 (389)
T ss_dssp T-----SCEEEEEEETT-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETT
T ss_pred C-----CcEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCC
Confidence 1 12444443322 223346788888886532111 011111 11234655553 33455556789
Q ss_pred CcEEEEEcCC
Q 001363 1000 GTLSIHEASN 1009 (1092)
Q Consensus 1000 g~i~vwd~~~ 1009 (1092)
|.|+.|=...
T Consensus 336 G~v~~wG~n~ 345 (389)
T 3kci_A 336 GEVYTWGDND 345 (389)
T ss_dssp CCEEEEECCT
T ss_pred CCEEEeeCCC
Confidence 9999996553
No 371
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=60.99 E-value=35 Score=29.53 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=49.2
Q ss_pred HHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhcc
Q 001363 13 LQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALD 86 (1092)
Q Consensus 13 ~q~L~~~g-~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~ 86 (1092)
...+...| |.++...+++=-.+..+ ...=.-....|+|++|+..+.+.-.++... . ..+-..=.=+..
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~--~a~~~lg~~~~~ 93 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF----I--KGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----H--HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh----h--HHHHHHHHHHHH
Confidence 33333444 77777666553322221 111133445688888888776642222221 1 111111122345
Q ss_pred CCCHHHHHHHHHhhccccCCCCHHHHHHHHHhh
Q 001363 87 GHDIAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1092)
Q Consensus 87 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~ 119 (1092)
.|++.+|+..+++-+. +.+.+++-...|..||
T Consensus 94 ~~~~~~A~~~~~~al~-l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ-VDPSNEEAREGVRNCL 125 (126)
T ss_dssp TTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHH-HCcCCHHHHHHHHHhc
Confidence 6778888888877544 3334555555555554
No 372
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=60.28 E-value=1.6e+02 Score=30.32 Aligned_cols=151 Identities=11% Similarity=0.085 Sum_probs=79.8
Q ss_pred CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-CCCEEEEEeCC
Q 001363 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGG 823 (1092)
Q Consensus 745 ~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~-dg~~l~~~sdg 823 (1092)
+...++..+.+|.++--.+..-. .....-.....+.. . ..+..+.... +..+++..+.|
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~-----------------~~~r~G~~~i~l~~--~-d~lv~~~~~~~~~~i~l~T~~G 167 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFN-----------------RLRTAGKVAIKLVD--G-DELIGVDLTSGEDEVMLFSAEG 167 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGT-----------------TCCTTCEESSCCCT--T-CCEEEEEEECTTCEEEEEETTS
T ss_pred CCcEEEEEeCCCeEEEEEHHHhh-----------------ccccCCeEEEEECC--C-CEEEEEEEeCCCCEEEEECCCC
Confidence 45668888999998876543211 11111122222221 2 4444444433 44455555578
Q ss_pred eEEEEEcCCcee---------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCce---------eeEeeccc
Q 001363 824 VISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGH 885 (1092)
Q Consensus 824 ~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---------~~~~l~~h 885 (1092)
.+..+....-.. ...+. ....|.++.... ++..+++.+..|.++-.++..-. ....+..-
T Consensus 168 ~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~ 245 (307)
T 1zi0_A 168 KVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 245 (307)
T ss_dssp EEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCC-SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTT
T ss_pred cEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCC
Confidence 877777643211 11222 334666666555 45678888999999888774321 11222223
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001363 886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917 (1092)
Q Consensus 886 ~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~ 917 (1092)
.+.+..+....+...++..+.+|.+.-.++..
T Consensus 246 ~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 246 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 34555544444445555666777666666554
No 373
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=58.32 E-value=12 Score=32.77 Aligned_cols=91 Identities=19% Similarity=0.310 Sum_probs=52.2
Q ss_pred CchhHHHHHHHHHhhhhcCh-hHHHHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccCCCc--CCccccchhhhHhHH
Q 001363 2 SKLNKDLVFLILQFLNEEGF-TESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKV--DDNRYSTKIYFEIRK 78 (1092)
Q Consensus 2 ~~~~~~~~~li~q~L~~~g~-~~s~~~L~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~--~~~~~~~~~~~~i~~ 78 (1092)
+....++...|+..|.+.|| ..+...+-++-|++.+ +...|++.++.+.+. -...+..-+++.+.+
T Consensus 18 ~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~ 86 (130)
T 2k9m_A 18 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEE 86 (130)
T ss_dssp CSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhc
Confidence 34567788999999999997 4566666666665443 345566666666432 233333323333322
Q ss_pred ---------hhhhh-hccCCCHH-HHHHHHHhhcccc
Q 001363 79 ---------QNFFE-ALDGHDIA-KALNILKKDLKDF 104 (1092)
Q Consensus 79 ---------q~~~E-ll~~~~~~-~a~~~l~~~l~~~ 104 (1092)
..+|| +|.++++. +|+.++|+ |.|-
T Consensus 87 ~~~~a~~ii~~~l~~~la~~~~~~~~~~~Ir~-L~P~ 122 (130)
T 2k9m_A 87 IYPEEEEILKKALRDLKRGKKLKPEIKGKLSR-LRLF 122 (130)
T ss_dssp SCSTTHHHHHHHHHHHHHSCCCCHHHHHHHHT-CCSC
T ss_pred CchhHHHHHHHhHHHHHHcCCHHHHHHHHHHc-CCCC
Confidence 13566 66666643 45666653 5543
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=57.27 E-value=19 Score=41.06 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=43.0
Q ss_pred CceEEEEccCCCEEEEEeC-------------CcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001363 938 SETHIQFHKDQTRFLLVHE-------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 938 ~v~~l~~s~dg~~la~~~d-------------~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
..-.|+|+|+|++++.... +.+.+.+..+++..+.........++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 3567999999997666321 23566676777766554444478999999999999888763
No 375
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=57.25 E-value=26 Score=39.51 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=42.6
Q ss_pred CceEEEEccCCCEEEEEe-------------CCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEE
Q 001363 938 SETHIQFHKDQTRFLLVH-------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 997 (1092)
Q Consensus 938 ~v~~l~~s~dg~~la~~~-------------d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 997 (1092)
..-.|+|.++|.+.++.. .+.+..++..+++..+.........++.++||||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 467899999999887422 125677777777765543222356799999999999888764
No 376
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=56.45 E-value=21 Score=36.91 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=63.1
Q ss_pred HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCHHHHHHHHHhhccc-cCCCCHHHHHHHH
Q 001363 38 MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKD-FAPGNEELFKELA 116 (1092)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~-~~~~~~~~~~~l~ 116 (1092)
+.+|++.|.+|+|-||.+.+..+ |.-++.++++.+|+.+|.+-..- +.+.+...-.+|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl--------------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI--------------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH--------------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 78999999999999999887654 22233345566666666553221 2223444455666
Q ss_pred HhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCcccccccCCCCCccHHHHHHHHHHHHHHHhcCCC
Q 001363 117 QLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCAN 189 (1092)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~c~~ 189 (1092)
.++.- .... .+ .....+++.+|. +|-+.+|++ .+. ..++++.|++|=.....+
T Consensus 77 ~llve-v~~~----~~-~~~~~~~~~rl~-~l~~~~p~~------------~~~-r~~fi~~ai~WS~~~g~~ 129 (312)
T 2wpv_A 77 FYLLE-VYDL----AE-VKVDDISVARLV-RLIAELDPS------------EPN-LKDVITGMNNWSIKFSEY 129 (312)
T ss_dssp HHHHH-HHHH----TT-CCCSHHHHHHHH-HHHTTCCTT------------CTT-HHHHHHHHHHHHHHTSSC
T ss_pred HHHHH-HHHH----cC-CCCCHHHHHHHH-HHHHHCCCC------------Cch-HHHHHHHHHHHHhhcCCC
Confidence 55542 1111 11 111234455554 444455552 122 478899999998765443
No 377
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=56.43 E-value=33 Score=35.19 Aligned_cols=55 Identities=11% Similarity=0.072 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhhhhcC-hhHHHHHHHH--hcCCCh-h--H--HHHHHHhcCcCHHHHHHHhcc
Q 001363 5 NKDLVFLILQFLNEEG-FTESAHMLER--ESRFYF-D--M--KFFEDMILDGKWEDVEQYLSS 59 (1092)
Q Consensus 5 ~~~~~~li~q~L~~~g-~~~s~~~L~~--Es~~~~-~--~--~~~~~~i~~g~w~~~~~~l~~ 59 (1092)
.-+.++++.+++...| +.++.+.|++ +.++.. + + ..=.-....|++++|+..+.+
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence 3445677777777777 6677777765 233222 1 1 111334466777777777665
No 378
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=54.41 E-value=1.8e+02 Score=33.81 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=26.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCceeeEeecc
Q 001363 855 DNNVIAIGMDDSTILIYNARSSEVISKLEG 884 (1092)
Q Consensus 855 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 884 (1092)
+..++++-+.|.++|+|++.+++++....-
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 467999999999999999999998876543
No 379
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=52.64 E-value=26 Score=36.42 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=61.5
Q ss_pred HHHHHHHhcCcCH---HHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCHHHHHHHHHhhc-cccCCCCHHHHH
Q 001363 38 MKFFEDMILDGKW---EDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDL-KDFAPGNEELFK 113 (1092)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l-~~~~~~~~~~~~ 113 (1092)
+.+|++.|.+|+| -||.+.+..+ + .-++.++++.+|+++|..-- .-+...+...-.
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi-----------~---------~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV-----------A---------ARYSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH-----------H---------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH-----------H---------HHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 6899999999999 8998886654 1 12233455566666555421 111223444455
Q ss_pred HHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCcccccccCCCCCccHHHHHHHHHHHHHHHhcCCC
Q 001363 114 ELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCAN 189 (1092)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~c~~ 189 (1092)
+|+.++.- .... .++ ....+.+.+|++-+. .+||+ .|.| ..+++.|++|=.....+
T Consensus 76 DL~~llve-vy~~----~~~-~~~~~~~~rL~~L~~-~~~~~------------~p~r-~~fi~~ai~WS~~~g~~ 131 (336)
T 3lpz_A 76 DLAVLLVD-TFRQ----AGQ-RVDGASRGKLLGCLR-LFQPG------------EPVR-KRFVKEMIDWSKKFGDY 131 (336)
T ss_dssp HHHHHHHH-HHHH----HTC-CCCHHHHHHHHHHHT-TSCTT------------CHHH-HHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHH-HHHH----cCC-CCCHHHHHHHHHHHH-hCCCC------------CcHH-HHHHHHHHHHHhhcCCC
Confidence 66655541 1111 111 112345555544443 44441 2334 77999999998764433
No 380
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=52.53 E-value=40 Score=39.13 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=30.4
Q ss_pred CEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 980 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 980 ~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
.|.++. .+..+|+|-+.|+++|+|++.++.++.....
T Consensus 223 ~Is~~~--~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKL--FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEec--cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 455444 4578999999999999999999998877765
No 381
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=52.52 E-value=59 Score=27.56 Aligned_cols=59 Identities=7% Similarity=-0.020 Sum_probs=32.4
Q ss_pred eEEEEccCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001363 940 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 940 ~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
..+.+..||.+++...+..-.+|...+.. ...-..+.+..||.+++.. .++.+ +|...+
T Consensus 26 ~~L~~q~dGNLvL~~~~~~~~vWssnt~~---------~~~~~~l~l~~dGNLVl~d-~~~~~-iW~S~t 84 (113)
T 3mez_B 26 YSLVMRDDCNLVLTKGSKTNIVWESGTSG---------RGQHCFMRLGHSGELDITD-DRLNT-VFVSNT 84 (113)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECCCTT---------SCSSCEEEECTTSCEEEEC-TTSCE-EEECSC
T ss_pred EEEEEcCCCEEEEEECCCCEEEEECCccc---------CCcCEEEEEeCCCcEEEEC-CCCCE-EEECCC
Confidence 45666777776665332234466654321 1122456788888877754 34444 676544
No 382
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.60 E-value=66 Score=40.63 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCceeeEee
Q 001363 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 882 (1092)
.+.+++..+ +..++++-+.|+++|||++.+++++.+.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 445566666 7889999999999999999999987764
No 383
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=45.05 E-value=2.8e+02 Score=28.71 Aligned_cols=164 Identities=10% Similarity=0.055 Sum_probs=91.3
Q ss_pred CCCeEEEEEcCC--CCCEEEEEeCCCcEEEEEcCCce-------eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001363 843 SPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSE-------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913 (1092)
Q Consensus 843 ~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~-------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iw 913 (1092)
...|.++..-++ +..++++.+.+|.++--.+.... ..-.+.. .+.+..+........|+..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 345655543331 46799999999999998876522 2223333 3456665555566778888899988888
Q ss_pred EcC--CCce-----eeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCCceee-------eee-ccCC
Q 001363 914 DVD--GWGI-----QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCL-------KQW-FPIS 977 (1092)
Q Consensus 914 d~~--~~~~-----~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~~~~~-------~~~-~~~h 977 (1092)
.+. .-.. .....+.... ...|.++...+++..++. +..|.++.-.+..-... ..+ +..-
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~~-----~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFNI-----DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCCT-----TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred ECcccccCcCCcCCCCeeeecCCC-----CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 776 2110 0011111111 135666666555555555 77888888776432221 111 1111
Q ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCce
Q 001363 978 SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus 978 ~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~ 1012 (1092)
.+.+..+....+...++..+.+|.+.-++...-..
T Consensus 248 ~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~ 282 (327)
T 3uc1_A 248 RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRK 282 (327)
T ss_dssp TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCB
T ss_pred CCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccc
Confidence 33455554444455666667777777776654433
No 384
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=43.58 E-value=3.9e+02 Score=29.93 Aligned_cols=165 Identities=12% Similarity=0.123 Sum_probs=88.0
Q ss_pred cccceeEEEEecCCCcEEEEEEeCCCc----------------------------EEEEECCCCceeEEEecC--CcCe-
Q 001363 440 HVGNVNDLAFSAPCKQISVITCGDDKT----------------------------IKVWDAVTGSRTYSFEGH--GAPV- 488 (1092)
Q Consensus 440 h~~~v~~~~~s~d~~~l~l~s~~~d~~----------------------------i~vwd~~~~~~~~~~~~~--~~~v- 488 (1092)
|-..+....|.-||+. -++....+++ +.|+|-.+|+.+.++.-. .+.+
T Consensus 177 ~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~ 255 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVS 255 (591)
T ss_dssp TSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGG
T ss_pred ccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCccc
Confidence 5556777778888876 4555555554 789998899888776432 1111
Q ss_pred --------------EEEeecccCCccEEEEEe---cCCeEEEEEcCCCCceE--EecCCC-----------CceEEEEEc
Q 001363 489 --------------YSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARV--DYDAPG-----------LGCTRMAYS 538 (1092)
Q Consensus 489 --------------~~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~--~~~~~~-----------~~i~~~~~s 538 (1092)
.+++.. +.+...++.+- .-..+..||+...+... .+.... +...-..+.
T Consensus 256 ~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVD 334 (591)
T 2zux_A 256 DWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVD 334 (591)
T ss_dssp GGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCS
T ss_pred ccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCC
Confidence 222221 11122233322 12246777776654322 222211 223333445
Q ss_pred cCCCE-EEEEecCCCCceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcCCC--CEEEEEeCCC----cEEEEECCCC
Q 001363 539 ANGRR-LFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAK--DQILAAGDDH----VIKIWDMNKV 610 (1092)
Q Consensus 539 ~dg~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~--~~l~~~s~dg----~i~iwd~~~~ 610 (1092)
-||+- |+.++. ++| ..|+.+.... +|. ..+....|.|+. ..++.+.+++ -..+.|..+|
T Consensus 335 gDG~dEIv~Gs~---------~iD-~dG~~L~st~~gHG---Da~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG 401 (591)
T 2zux_A 335 GDGKDEIIFGSM---------AVD-HDGKGMYSTGLGHG---DALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATG 401 (591)
T ss_dssp SSSSCEEEETTE---------EEC-TTSCEEEECSCCCC---SCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTC
T ss_pred CCCCceEEEeee---------EEC-CCCCEeeeCCCCCC---CeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCC
Confidence 55553 222221 223 2344443332 333 777777888874 4666666542 3556899999
Q ss_pred ceEEEEeCC
Q 001363 611 QLLTTIDAG 619 (1092)
Q Consensus 611 ~~~~~~~~~ 619 (1092)
+.+......
T Consensus 402 ~vlw~~~~~ 410 (591)
T 2zux_A 402 KILWGVYAG 410 (591)
T ss_dssp CEEEEECCS
T ss_pred cEEEEcCCC
Confidence 999887644
No 385
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.09 E-value=6.3 Score=49.95 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=34.5
Q ss_pred CEEEEEEecCCCEEEEEECCCcEEEEEcCCCceEEeeccccc
Q 001363 980 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021 (1092)
Q Consensus 980 ~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~ 1021 (1092)
.+.+++..++..+|+|-+.|+++|+|++.++.++........
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~~ 280 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQT 280 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCCS
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhhc
Confidence 445566778889999999999999999999999888764433
No 386
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=41.81 E-value=3.1e+02 Score=28.19 Aligned_cols=109 Identities=8% Similarity=0.035 Sum_probs=60.2
Q ss_pred CCcEEEEeecCCeeEEEeecCCCcCcCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE-EEEeCC
Q 001363 745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL-FSASGG 823 (1092)
Q Consensus 745 ~g~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~v~~~~~s~dg~~l-~~~sdg 823 (1092)
+...++..+.+|.++.-.+..-... . ..| .....+. ....+..+....++..+ +....|
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~--------------r-~~G--~~~i~L~---~~d~lv~~~~~~~~~~i~l~T~~G 172 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAV--------------K-SRG--VIVIKLN---DKDFVTSAEIVFKDEKVICLSKKG 172 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC-------------------C--EECBCCC---TTCCEEEEEEECTTCEEEEEETTS
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhcc--------------C-CCc--EEEEecC---CCCEEEEEEEeCCCCEEEEEeCCC
Confidence 4566888888888877654321100 0 112 2222232 23445555444444444 444578
Q ss_pred eEEEEEcCCc---------eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEcCC
Q 001363 824 VISLYIVMTF---------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 875 (1092)
Q Consensus 824 ~i~iwd~~~~---------~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 875 (1092)
.+..+....- .....+. ....|.++..-. ++..|++.+..|..+..++..
T Consensus 173 ~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 173 SAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECT-TCSEEEEEETTSEEEEEEGGG
T ss_pred cEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEEC-CCCeEEEEECCCceEEEEHHH
Confidence 8888876542 1222233 234566666555 456788889999999988854
No 387
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=40.53 E-value=1.4e+02 Score=26.46 Aligned_cols=94 Identities=11% Similarity=0.154 Sum_probs=55.0
Q ss_pred hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCHHHHHH
Q 001363 21 FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALN 95 (1092)
Q Consensus 21 ~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~ 95 (1092)
+.++...+++-.....+ +..=+-....|+|++|+..+.+.-.++.+. ...+...-.-+...|++.+|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCchHHHHH
Confidence 34555555555444332 111133466799999999998752332221 1111112222346799999999
Q ss_pred HHHhhccccCCCCHHHHHHHHHhhcc
Q 001363 96 ILKKDLKDFAPGNEELFKELAQLLTL 121 (1092)
Q Consensus 96 ~l~~~l~~~~~~~~~~~~~l~~~~~~ 121 (1092)
.+++-+. +.+.+++.+..|+.++..
T Consensus 87 ~~~~al~-~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVE-LNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 9998654 344567777888877654
No 388
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=40.22 E-value=3.6e+02 Score=28.51 Aligned_cols=64 Identities=6% Similarity=-0.010 Sum_probs=36.1
Q ss_pred cCCCCEEEEEeCCCcEEEEECCC-------CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001363 587 DTAKDQILAAGDDHVIKIWDMNK-------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1092)
Q Consensus 587 ~~~~~~l~~~s~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 651 (1092)
-|+..++++.+.+|.|+--.+.. ++-+..+..... ..+..+........++..+..|.++-+..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~G~~~~~~~ 74 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEE-DFIDQLWLVNTHDTLLTFTSSGKVFWLPV 74 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCC-CCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCC-CEEEEEEEecCCCEEEEEeCCCeEEEEEH
Confidence 46778899999999998754322 111222222221 23444444445566666777777665543
No 389
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=40.12 E-value=28 Score=27.45 Aligned_cols=29 Identities=14% Similarity=0.136 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001363 7 DLVFLILQFLNEEGFTESAHMLERESRFY 35 (1092)
Q Consensus 7 ~~~~li~q~L~~~g~~~s~~~L~~Es~~~ 35 (1092)
-+.-||-.||+=+||+-|+..++-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 35668999999999999999999999985
No 390
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=38.04 E-value=5.6e+02 Score=30.12 Aligned_cols=62 Identities=13% Similarity=0.084 Sum_probs=36.2
Q ss_pred CceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCC-----CCCCceEEEcc-CCCEEEEEe
Q 001363 579 NSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----LPENPRICFNK-NGTLLAVIA 641 (1092)
Q Consensus 579 ~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~-~~~~l~~~~ 641 (1092)
+.|..++++|.. ..++++...+.|..++-. |+.-..+..... ...+.+++++| +.+.++++.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 378899999874 567777766776666533 333233322111 13477899998 434444443
No 391
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=37.18 E-value=1e+02 Score=35.07 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=48.0
Q ss_pred ceEEEEEccCCCEEEEEecCC--------CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE
Q 001363 531 GCTRMAYSANGRRLFSCGTSK--------EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 596 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~~--------~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 596 (1092)
..-.|+|+|+|+++++--.+. .+++.+.+.+..+++..+.+.+.. ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEE
Confidence 456799999999665532110 134667888889999988888776 5789999999999888764
No 392
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=35.71 E-value=1.1e+02 Score=27.11 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=8.4
Q ss_pred hcCcCHHHHHHHhcc
Q 001363 45 ILDGKWEDVEQYLSS 59 (1092)
Q Consensus 45 i~~g~w~~~~~~l~~ 59 (1092)
...|+|++|+..+..
T Consensus 66 ~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 66 QAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHH
Confidence 345666666655554
No 393
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.01 E-value=1.6e+02 Score=33.29 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=46.8
Q ss_pred ceEEEEEccCCCEEEEEecC--------CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe
Q 001363 531 GCTRMAYSANGRRLFSCGTS--------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1092)
Q Consensus 531 ~i~~~~~s~dg~~l~~~~~~--------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 597 (1092)
....++|.++|.+.++.-.. +.+...++.++..++++...+.+.. ...++.++|+||++.|++.-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~--~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC--CccccCCEECCCCCEEEEEE
Confidence 45789999999877733111 1124478888998998877776543 35689999999999887753
No 394
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=34.63 E-value=22 Score=28.42 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.5
Q ss_pred CCchhHHHHHHHHHhhhhc
Q 001363 1 MSKLNKDLVFLILQFLNEE 19 (1092)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~ 19 (1092)
|+..+++++..|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6778899999999999864
No 395
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=33.92 E-value=5.5e+02 Score=28.80 Aligned_cols=296 Identities=13% Similarity=0.083 Sum_probs=142.8
Q ss_pred CCCCceEEeecCCCceEEEEEcCCCc----------------------------EEEEecCCCCeeEEeeeeeeeccccc
Q 001363 333 GSSSPMSMDFHPVQHTLLLVGTNVGD----------------------------TGLWDVNSGQKLFIRNFKVWDIGACS 384 (1092)
Q Consensus 333 h~~~V~~v~~spdg~~llasg~~dg~----------------------------i~iwd~~~~~~~~~~~~~~~d~~~~~ 384 (1092)
|-..+....|.-||+.=++....+|+ +.|+|=.+|+.+.+..+..-.-..+.
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 55578888889999766777766665 78888888887765332100000000
Q ss_pred ceeeEeeecCCCCc--EEEEEECC-CCCEEEEEe---CCCEEEEEEccCCCcccceEEEccc-----------ccceeEE
Q 001363 385 MLFKTALVRDPGVS--VNRVVWSP-DGSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAH-----------VGNVNDL 447 (1092)
Q Consensus 385 ~~~~~~~l~~h~~~--V~~l~~sp-dg~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~h-----------~~~v~~~ 447 (1092)
.-- -.++... ..++++-- +.-.++.+- ....|..||..+++... ...+... .....-.
T Consensus 257 WGD----~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~-~W~~d~~~~~~~~~~gqg~h~~~va 331 (591)
T 2zux_A 257 WGD----SYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSK-LWTLDSSKSGNEAFAGQGNHNLSIA 331 (591)
T ss_dssp GTC----SSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEE-EEEEETTSTTCGGGSSCCCSCCEEE
T ss_pred ccc----ccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEE-EEEecCCCCCcccccccCCCCCeeE
Confidence 000 0001001 12233221 111222221 12246667766553211 1122110 0134445
Q ss_pred EEecCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcCeEEEeecccCCccEEEEEecCC----eEEEEEcCCCCce
Q 001363 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGAR 522 (1092)
Q Consensus 448 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~ 522 (1092)
.+.-||+. -++.|+ .++| ..|+.+.+. .+|...+....|.|+..|.-++.+..++ -..+.|..+++.+
T Consensus 332 DVDgDG~d-EIv~Gs-----~~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 332 DVDGDGKD-EIIFGS-----MAVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp CCSSSSSC-EEEETT-----EEEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEE
T ss_pred eCCCCCCc-eEEEee-----eEEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEE
Confidence 56667776 455444 1344 455555444 3788777777787776666777776652 2445787887777
Q ss_pred EEecCC--CCceEEEEEccCCC--EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC
Q 001363 523 VDYDAP--GLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1092)
Q Consensus 523 ~~~~~~--~~~i~~~~~s~dg~--~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 598 (1092)
...... .+......|.|+.. .+.+ . -.+++. +|+.+.... . ...-..+-|..+...-+.-
T Consensus 405 w~~~~~~d~Gr~~~~Didp~~pG~E~w~--~-------~~l~~~-~G~~i~~~~--p--~~~N~~i~WdGDl~relld-- 468 (591)
T 2zux_A 405 WGVYAGKDVGRGMAADIDPRYPGQEVWA--N-------GSLYSA-KGVKIGSGV--P--SSTNFGIWWDGDLLREQLD-- 468 (591)
T ss_dssp EEECCSSCCCCEEEECCCTTSSSCEEEE--T-------TEEECT-TSCBCSSCC--C--SCCSEEECCSSSSSCEEEE--
T ss_pred EEcCCCCCCCceeEEecCCCCCceEEEe--c-------CceECC-CCCEecCCC--C--CCcceeEEECCCCcHhhhC--
Confidence 665432 22333333444422 2222 0 124453 333332210 1 0112346676665333332
Q ss_pred CCcEEEEECCCCceEEEEeCCC-----CCCCCceEEEcc--CC-CEEEEE-eCCCeEEEEECCCCce
Q 001363 599 DHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNK--NG-TLLAVI-ANENRIKILETPESNS 656 (1092)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~--~~-~~l~~~-~~dg~i~iw~~~~~~~ 656 (1092)
.+.|.-|+...+.....+...+ +...-.++...- |. .-++.. .++..++||.......
T Consensus 469 ~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt~ 535 (591)
T 2zux_A 469 SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPTE 535 (591)
T ss_dssp TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCS
T ss_pred CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCCCCc
Confidence 2468889988777544444332 111223333332 22 234434 4556799998765433
No 396
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=32.58 E-value=4.3e+02 Score=27.21 Aligned_cols=237 Identities=7% Similarity=0.087 Sum_probs=120.5
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCcee----eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEEc---CC------ce
Q 001363 812 KNDAYLFSAS-GGVISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA---RS------SE 877 (1092)
Q Consensus 812 ~dg~~l~~~s-dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~---~~------~~ 877 (1092)
|+..++++.+ +|.|+--.+.+.+. -..+. ..+.+..+.... ....|+..+..|.++-+.. .. |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 3445555555 57777665542211 11122 223444444444 4556777888887666554 22 22
Q ss_pred eeEe---eccccCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCceee----eeeeecCCCCcCCCCCceEEEEcc-
Q 001363 878 VISK---LEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQT----CRSLQTPDGVMTLAPSETHIQFHK- 946 (1092)
Q Consensus 878 ~~~~---l~~h~~~V~~l~~sp---dg~~l~s~s~Dg~I~iwd~~~~~~~~----~~~~~~~~~~~~~~~~v~~l~~s~- 946 (1092)
++.. +. -...|.++...+ ++.+++.++..|.++--.+..-.... ...+...++ +.+..+....
T Consensus 81 ~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~ 154 (323)
T 1wp5_A 81 HIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDG 154 (323)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECS
T ss_pred ChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCC
Confidence 2211 22 233466543333 26789999999999999886422111 112222222 2344544444
Q ss_pred CCCEEEEEeCCcEEEEEcCCceeeee-------eccCCCCCEEEEEEecCCC-EEEEEECCCcEEEEEcCCCceEEeecc
Q 001363 947 DQTRFLLVHETHLAIYEAEELTCLKQ-------WFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus 947 dg~~la~~~d~~i~lwd~~~~~~~~~-------~~~~h~~~v~~l~fs~dg~-~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
+..+++.+.+|.+..++...-..... ........|.++..-+++. .|++.+..|..+.-++..-....+-..
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k 234 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR 234 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC
Confidence 44455558888888887753221111 1111245566665544455 788888888888777655322211100
Q ss_pred ----ccccCCCCccccccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001363 1019 ----TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus 1019 ----~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1061 (1092)
....... +..+.. ++...+ +..++..+..|.+...++.
T Consensus 235 Gv~~~~~~~~~--~~~l~~-~~~v~~--~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 235 GVVILRELKAN--PHRISG-FVVAQD--SDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CEECSCCCSSS--CCCEEE-EEEECT--TCEEEEEETTSCEEEEEGG
T ss_pred CEECeeecCCC--CceEEE-EEEeCC--CCeEEEEeCCCeEEEEEhh
Confidence 0001111 112221 223343 4567788888888777764
No 397
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=32.44 E-value=5.1 Score=33.54 Aligned_cols=35 Identities=9% Similarity=0.125 Sum_probs=27.2
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccC
Q 001363 25 AHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1092)
Q Consensus 25 ~~~L~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1092)
+..+-+|||+++++.-+-..|. |+|+++.+.++++
T Consensus 38 ~i~vi~~sGL~y~~~pmgT~IE-Ge~devm~vvk~~ 72 (106)
T 1vk8_A 38 AIEKISSWGMKYEVGPSNTTVE-GEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHTTCSCEEECSSCEEEE-ECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEeCCCccEEE-cCHHHHHHHHHHH
Confidence 3344458999999887777775 9999999998754
No 398
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=31.69 E-value=1.2e+02 Score=29.95 Aligned_cols=111 Identities=7% Similarity=0.062 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHh
Q 001363 6 KDLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1092)
Q Consensus 6 ~~~~~li~q~L~~~g-~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q 79 (1092)
.|+.....+.+...| |.++...+++=-....+ ...-.-....|++++|+..+......+.+. ......+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT---KAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT---TCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch---hHHHHHHHH
Confidence 344444555555555 77777766653332221 233345667899999999887752222111 121222222
Q ss_pred hhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhc
Q 001363 80 NFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1092)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~~ 120 (1092)
.-.-+...|++.+|+..+++-+.- .+.+...+..|+.+..
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~ 119 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDR-DTTRLDMYGQIGSYFY 119 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc-CcccHHHHHHHHHHHH
Confidence 222334568888888888875442 2233444555555443
No 399
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.43 E-value=88 Score=29.72 Aligned_cols=102 Identities=12% Similarity=0.192 Sum_probs=63.6
Q ss_pred ccchhhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHH
Q 001363 68 YSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLE 147 (1092)
Q Consensus 68 ~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 147 (1092)
+...+.-+|.+|..+=.+++|++.+|..+|+.-+..-. .+...=..|..++.+.+. .++-+-++ |-..++++
T Consensus 108 l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~-s~~kLr~kL~~II~~Kd~-~H~~lqnF------Sy~~~~~k 179 (235)
T 3bu8_A 108 VVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP-TTQKLRNDLLNIIREKNL-AHPVIQNF------SYETFQQK 179 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG-GGHHHHHHHHHHHHHTCT-TSHHHHTC------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC-CchHHHHHHHHHHhccCc-ccHHHHhc------cHHHHHHH
Confidence 34458899999999999999999999999999777422 122233467777766543 22222221 34556677
Q ss_pred HHhhcccCcccccccCCCCCccHHHHHHHHHHHHHHHhcCCC
Q 001363 148 LKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCAN 189 (1092)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~c~~ 189 (1092)
+..++...+= .++. -||..|.+-+.++|..
T Consensus 180 i~~fve~~~~---------~a~~---FLL~~A~Kv~ks~~~~ 209 (235)
T 3bu8_A 180 MLRFLESHLD---------DAEP---YLLTMAKKALKSESAA 209 (235)
T ss_dssp HHHHHHTTSC---------CCCC---HHHHHHHHHTTTC---
T ss_pred HHHHHHHHhc---------ccch---HHHHHHHHHHhhcccc
Confidence 7776665321 2233 4677788877777654
No 400
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=30.35 E-value=59 Score=26.34 Aligned_cols=55 Identities=5% Similarity=-0.116 Sum_probs=28.7
Q ss_pred HhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccC-CCHHHHHHHHHhhcc
Q 001363 44 MILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDG-HDIAKALNILKKDLK 102 (1092)
Q Consensus 44 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~-~~~~~a~~~l~~~l~ 102 (1092)
....|+|++|+..+.+........ ....++...-.=+... |++.+|+..++.-+.
T Consensus 50 ~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 50 LYNLERYEEAVDCYNYVINVIEDE----YNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSCCT----TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHccCHHHHHHHHHHHHHhCccc----chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 445688888888876642221110 0111122222223456 778888888876543
No 401
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=29.53 E-value=30 Score=19.85 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=12.7
Q ss_pred chhHHHHHHHHHhhhhc
Q 001363 3 KLNKDLVFLILQFLNEE 19 (1092)
Q Consensus 3 ~~~~~~~~li~q~L~~~ 19 (1092)
.+-+||++||-||-+..
T Consensus 2 nfMkDvlql~qQy~qsh 18 (26)
T 1kdl_A 2 NFMKDVLRLIEQYVSSH 18 (26)
T ss_dssp THHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34578999999986654
No 402
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=28.93 E-value=1.5e+02 Score=25.69 Aligned_cols=14 Identities=14% Similarity=-0.121 Sum_probs=7.0
Q ss_pred cCCCHHHHHHHHHh
Q 001363 86 DGHDIAKALNILKK 99 (1092)
Q Consensus 86 ~~~~~~~a~~~l~~ 99 (1092)
..|++.+|+..+++
T Consensus 64 ~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 64 SLGLYEQALQSYSY 77 (142)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHH
Confidence 34555555555554
No 403
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=28.36 E-value=4.9e+02 Score=26.52 Aligned_cols=158 Identities=8% Similarity=0.123 Sum_probs=85.3
Q ss_pred CCCeeEEEEe---cCCCEEEEEe-CCeEEEEEcCCce-------eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 001363 802 QEAVPCFALS---KNDAYLFSAS-GGVISLYIVMTFK-------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 870 (1092)
Q Consensus 802 ~~~v~~~~~s---~dg~~l~~~s-dg~i~iwd~~~~~-------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i 870 (1092)
...|.++..- .++.+++..+ .|.++-..+.... ....+... +.+..+.... +...++..+.+|.+..
T Consensus 94 ~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~-~~~~i~l~T~~G~~ir 171 (307)
T 1zi0_A 94 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS-GEDEVMLFSAEGKVVR 171 (307)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC-CCCEEEEECCCCcEEE
Confidence 3345554332 3455566555 6998888765322 22223333 5555555544 4556777888998888
Q ss_pred EEcCCc---------eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee-----eeeeecCCCCcCCC
Q 001363 871 YNARSS---------EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMTLA 936 (1092)
Q Consensus 871 wd~~~~---------~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~-----~~~~~~~~~~~~~~ 936 (1092)
++...- ...-.+. -...|.++...+++..+++.+..|.++-.+++.-.... ...++.....
T Consensus 172 f~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~---- 246 (307)
T 1zi0_A 172 FKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN---- 246 (307)
T ss_dssp EEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTT----
T ss_pred EEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCC----
Confidence 877431 1112232 23567777665566778888999999988875422110 1111111111
Q ss_pred CCceEEEE-ccCCCEEEEEeCCcEEEEEcCC
Q 001363 937 PSETHIQF-HKDQTRFLLVHETHLAIYEAEE 966 (1092)
Q Consensus 937 ~~v~~l~~-s~dg~~la~~~d~~i~lwd~~~ 966 (1092)
+.+..+.. .++..+++.+.+|.+.-+++..
T Consensus 247 ~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 247 GLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp CSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 13333333 3444455556777766666543
No 404
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=28.27 E-value=49 Score=25.70 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=26.8
Q ss_pred CchhHHHHHHHHHhhhhcCh-hHHHHHHHHhcCCChh
Q 001363 2 SKLNKDLVFLILQFLNEEGF-TESAHMLERESRFYFD 37 (1092)
Q Consensus 2 ~~~~~~~~~li~q~L~~~g~-~~s~~~L~~Es~~~~~ 37 (1092)
+.....+...|+..|.+.|| +.+...+-++-|++.+
T Consensus 27 ~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~ 63 (76)
T 2k9l_A 27 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE 63 (76)
T ss_dssp CTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH
Confidence 34557789999999999997 4566666666676554
No 405
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.02 E-value=2.3e+02 Score=24.07 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=8.8
Q ss_pred HhcCcCHHHHHHHhcc
Q 001363 44 MILDGKWEDVEQYLSS 59 (1092)
Q Consensus 44 ~i~~g~w~~~~~~l~~ 59 (1092)
....|+|++|+..+..
T Consensus 75 ~~~~~~~~~A~~~~~~ 90 (148)
T 2dba_A 75 HLKLEDYDKAETEASK 90 (148)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHH
Confidence 3445666666655544
No 406
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=27.79 E-value=2.9e+02 Score=27.82 Aligned_cols=108 Identities=8% Similarity=0.096 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhhhhcC-hhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhh
Q 001363 5 NKDLVFLILQFLNEEG-FTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1092)
Q Consensus 5 ~~~~~~li~q~L~~~g-~~~s~~~L~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1092)
+.++..++.+.+...| |.++...|++ +-..+ ....+-....|++++|+..+..+....... ..+.+. ..+
T Consensus 100 ~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~l~-~a~ 172 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA----TLTQLA-TAW 172 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc----HHHHHH-HHH
Confidence 4555555656666777 8888888887 33334 333345567899999999988763332221 212111 122
Q ss_pred hhh-ccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhc
Q 001363 82 FEA-LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1092)
Q Consensus 82 ~El-l~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~~ 120 (1092)
+.+ ...|++++|+.++++-+.. .+.++..+..|+.++.
T Consensus 173 ~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 173 VSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHH
Confidence 222 3457788888888775443 3345555555555443
No 407
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=27.71 E-value=1.5e+02 Score=24.81 Aligned_cols=89 Identities=9% Similarity=-0.026 Sum_probs=45.8
Q ss_pred HHHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhh
Q 001363 8 LVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1092)
Q Consensus 8 ~~~li~q~L~~~g-~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1092)
..+.....+...| |.++...+++=-.+..+ ...=.-....|+|++|+..+.....++... . ...+ ..-
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~-~~~~----~lg 79 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-V-RAYI----RKA 79 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHH----HHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-H-HHHH----HHH
Confidence 3333444444444 77777766654333222 122233456788988888887642222211 0 1111 111
Q ss_pred hhhccCCCHHHHHHHHHhhcc
Q 001363 82 FEALDGHDIAKALNILKKDLK 102 (1092)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~ 102 (1092)
.=+...|++.+|+..+++-+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHH
Confidence 223456888888888877433
No 408
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=27.55 E-value=2.5e+02 Score=23.27 Aligned_cols=85 Identities=8% Similarity=-0.028 Sum_probs=43.3
Q ss_pred HHHHhhhhcChhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhc
Q 001363 11 LILQFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEAL 85 (1092)
Q Consensus 11 li~q~L~~~g~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell 85 (1092)
+-..+++..-|.++...+++=.....+ ...-.-....|+|++|+.++.......... ..+.+. .-.-+.
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~----la~~~~ 95 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTR----KAAALE 95 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHH----HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHH----HHHHHH
Confidence 333334444477777777665444332 122233456788888888876642221111 001111 111224
Q ss_pred cCCCHHHHHHHHHhhc
Q 001363 86 DGHDIAKALNILKKDL 101 (1092)
Q Consensus 86 ~~~~~~~a~~~l~~~l 101 (1092)
..|++.+|+..+++-+
T Consensus 96 ~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 96 AMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5678888888887644
No 409
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=27.12 E-value=2.6e+02 Score=23.01 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=16.3
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEcC
Q 001363 806 PCFALSKNDAYLFSASGGVISLYIVM 831 (1092)
Q Consensus 806 ~~~~~s~dg~~l~~~sdg~i~iwd~~ 831 (1092)
..+.+..||.+++...++. .+|...
T Consensus 53 ~~L~l~~dGnLvL~d~~~~-~vWss~ 77 (105)
T 4h3o_A 53 CSAVLQSDGNFVVYDSSGR-SLWASH 77 (105)
T ss_dssp CEEEECTTSCEEEECTTCC-EEEECC
T ss_pred EEEEEeCCccEEEECCCcE-EEEEec
Confidence 3577888888877654444 367654
No 410
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=27.09 E-value=1.2e+02 Score=27.23 Aligned_cols=87 Identities=10% Similarity=0.059 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhh
Q 001363 6 KDLVFLILQFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1092)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 80 (1092)
++|-.-|.++|.+-+.-+-+ ..+..+ ...=......|++++|+..+.....++... . .+.+ ..
T Consensus 9 ~~~~~~l~~~~~~~~~l~~a------l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-~-~~~~----~l 76 (151)
T 3gyz_A 9 ESISTAVIDAINSGATLKDI------NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-V-DYIM----GL 76 (151)
T ss_dssp CHHHHHHHHHHHTSCCTGGG------CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHH----HH
T ss_pred HHHHHHHHHHHHCCCCHHHH------hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H-HHHH----HH
Confidence 34566777777776642222 122222 111134456788888888887753322221 0 0111 11
Q ss_pred hhhhccCCCHHHHHHHHHhh--cccc
Q 001363 81 FFEALDGHDIAKALNILKKD--LKDF 104 (1092)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~--l~~~ 104 (1092)
=.-+...|++.+|+..+++- +.|-
T Consensus 77 g~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 77 AAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 12234678888888888875 5554
No 411
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=27.07 E-value=30 Score=24.44 Aligned_cols=16 Identities=38% Similarity=0.845 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHhhhhc
Q 001363 4 LNKDLVFLILQFLNEE 19 (1092)
Q Consensus 4 ~~~~~~~li~q~L~~~ 19 (1092)
+++++++.|+|||+..
T Consensus 1 ~~K~la~sIi~FL~~~ 16 (52)
T 4gof_A 1 MKKRLAYAIIQFLHDQ 16 (52)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHh
Confidence 3678999999999764
No 412
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=26.63 E-value=2.4e+02 Score=22.80 Aligned_cols=103 Identities=14% Similarity=0.265 Sum_probs=49.7
Q ss_pred HHHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhh
Q 001363 8 LVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1092)
Q Consensus 8 ~~~li~q~L~~~g-~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1092)
....+...+...| |.++...+++=.....+ ...-.-....|++++|+.++.......... ....+.+ -
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l----a 84 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNL----G 84 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHH----H
Confidence 3344444444444 66666665543222111 222234456788888888877642221111 0111111 1
Q ss_pred hhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHH
Q 001363 82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQ 117 (1092)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1092)
.-+...+++.+|+..+++-+. +.+.++.....|..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALE-LDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH-hCCCcHHHHHHHHH
Confidence 112357888888888876443 22234444444443
No 413
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=26.07 E-value=1.4e+02 Score=26.76 Aligned_cols=89 Identities=12% Similarity=0.028 Sum_probs=45.6
Q ss_pred HHHHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhh
Q 001363 7 DLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1092)
Q Consensus 7 ~~~~li~q~L~~~g-~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 80 (1092)
+....+...+...| |.++...+++=-.+..+ ...=.-....|+|++|+..+.....++... ..+.+ ..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~----~l 85 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWS----RL 85 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH----HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHH----HH
Confidence 34444444444454 77777666654333221 122234456788888888877642222211 00111 11
Q ss_pred hhhhccCCCHHHHHHHHHhhc
Q 001363 81 FFEALDGHDIAKALNILKKDL 101 (1092)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~l 101 (1092)
-.=+...|++.+|+..+++-+
T Consensus 86 g~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHH
Confidence 122245688888888887643
No 414
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=26.04 E-value=2.6e+02 Score=23.37 Aligned_cols=88 Identities=9% Similarity=0.121 Sum_probs=46.0
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCcee
Q 001363 890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 969 (1092)
Q Consensus 890 ~~l~~spdg~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~ 969 (1092)
..+.+..||++++... ++ +|...+.. .+ .-..+.+..+|.+++...++...+|...+.
T Consensus 22 ~~L~~q~dGnLvl~~~-~~---vW~snt~~----------~~------~~~~l~l~~dGNLVl~~~~~~~~vW~S~t~-- 79 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNE-AG---GFQSNTHG----------RG------VDCTLRLNNRGQLEIHSANSNTPVWVYPRS-- 79 (111)
T ss_dssp EEEEECTTSCEEEECS-SC---CEECCCTT----------SC------SSCEEEECTTSCEEEECSSCSSCSEEESSS--
T ss_pred EEEEEccCCeEEEECC-CC---EEECCccc----------CC------cCEEEEEcCCCcEEEEeCCCCEEEEEeccc--
Confidence 4566677777766432 22 77755421 00 123577888888777654444456754321
Q ss_pred eeeeccCCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001363 970 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus 970 ~~~~~~~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~ 1009 (1092)
.........+.+.+||.+++-+ -.+|...+
T Consensus 80 -----~~~~~~~~~l~Lq~dGNlvly~-----~~~W~s~t 109 (111)
T 3mez_A 80 -----VNTVRGNYAATLGPDQHVTIYG-----PAIWSTPA 109 (111)
T ss_dssp -----CCCCSSCCEEEECTTSCEEEEC-----SEEEECCC
T ss_pred -----cCCCCcCEEEEECCCCeEEEec-----cCEEccCC
Confidence 0011123445666777766643 24565543
No 415
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=25.62 E-value=7.6e+02 Score=27.83 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=29.1
Q ss_pred CceEEEEEcCC--CCEEEEEeCC----CcEEEEECCCCceEEEEeCCCC
Q 001363 579 NSVSVVHFDTA--KDQILAAGDD----HVIKIWDMNKVQLLTTIDAGGG 621 (1092)
Q Consensus 579 ~~v~~~~~~~~--~~~l~~~s~d----g~i~iwd~~~~~~~~~~~~~~~ 621 (1092)
..+....|.|+ +-.++.+.++ .-..+.|..+|+.+........
T Consensus 368 Da~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D 416 (620)
T 2zuy_A 368 DAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTD 416 (620)
T ss_dssp SCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSC
T ss_pred ceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCccc
Confidence 66777777787 4455555554 2567889999999988765433
No 416
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=25.33 E-value=2.2e+02 Score=25.73 Aligned_cols=14 Identities=21% Similarity=-0.028 Sum_probs=7.8
Q ss_pred cCcCHHHHHHHhcc
Q 001363 46 LDGKWEDVEQYLSS 59 (1092)
Q Consensus 46 ~~g~w~~~~~~l~~ 59 (1092)
..|+|++|+..+..
T Consensus 51 ~~~~~~~a~~~~~~ 64 (184)
T 3vtx_A 51 DIGLPNDAIESLKK 64 (184)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 45666666655544
No 417
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=25.26 E-value=1.6e+02 Score=25.03 Aligned_cols=89 Identities=12% Similarity=-0.118 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHh
Q 001363 6 KDLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1092)
Q Consensus 6 ~~~~~li~q~L~~~g-~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q 79 (1092)
.+....+...+...| |.++...+++=-.+..+ ...=.-....|+|++|+..+.....+.... . .+.+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~-~~~~~---- 82 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-V-KAHFF---- 82 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHHH----
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-H-HHHHH----
Confidence 344444444444555 77777666653322222 122233456889999988887642222211 0 11111
Q ss_pred hhhhhccCCCHHHHHHHHHhh
Q 001363 80 NFFEALDGHDIAKALNILKKD 100 (1092)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~ 100 (1092)
.-.-+...|++.+|+..+++-
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 111234568888888888764
No 418
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=24.39 E-value=5.1e+02 Score=29.09 Aligned_cols=76 Identities=8% Similarity=-0.058 Sum_probs=46.5
Q ss_pred EecCCCEEEEEEC-------CCcEEEEEcCCCceEEeeccccccCCCCccccccceEEEECCC-CC--CEEEEEeCCCcE
Q 001363 986 FSCDCRMVFTSFV-------DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL-KP--TQFAVGLTNGEV 1055 (1092)
Q Consensus 986 fs~dg~~l~t~~~-------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~-d~--~~l~~~~~dg~v 1055 (1092)
--.+|++++.-+. ...|+|.|+.+|.++.++...... .. ...+....+ .+.+ |+ +.+.+|...|.|
T Consensus 202 ~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~~~-~~--~~Gls~~~~-~D~d~Dg~~D~~YaGDl~Gnl 277 (570)
T 3hx6_A 202 RLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTGRT-GV--PNGLSSPRL-ADNNSDGVADYAYAGDLQGNL 277 (570)
T ss_dssp ECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECCST-TS--CCCEEEEEE-ECTTSSSBCCEEEEEETTSEE
T ss_pred EecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCCCC-cc--CCccccceE-EecCCCCceeEEEEEeCCCcE
Confidence 3347776554433 247999999999999888643210 00 111222222 3321 11 479999999999
Q ss_pred EEEecCCCCC
Q 001363 1056 YVIEPNEPGD 1065 (1092)
Q Consensus 1056 ~~w~~~~~~~ 1065 (1092)
.-+|+....+
T Consensus 278 WRfDl~~~~~ 287 (570)
T 3hx6_A 278 WRFDLIAGKV 287 (570)
T ss_dssp EEEECSCSSC
T ss_pred EEEEcCCCCc
Confidence 9999987665
No 419
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=24.10 E-value=1.9e+02 Score=23.87 Aligned_cols=95 Identities=8% Similarity=0.023 Sum_probs=49.2
Q ss_pred HHHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcC-CccccchhhhHhHHhh
Q 001363 8 LVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVD-DNRYSTKIYFEIRKQN 80 (1092)
Q Consensus 8 ~~~li~q~L~~~g-~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~-~~~~~~~~~~~i~~q~ 80 (1092)
....+.+.+...| |.++...+++=.....+ ...-.-....|+|++|+.++....... ...........++-..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3344444444555 77777766653322111 122233456799999999987642221 1100000112222222
Q ss_pred hhhhccCCCHHHHHHHHHhhcc
Q 001363 81 FFEALDGHDIAKALNILKKDLK 102 (1092)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~l~ 102 (1092)
-.-+...|++.+|+..+++-+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 2223568999999999987544
No 420
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=23.41 E-value=2.7e+02 Score=27.97 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=50.0
Q ss_pred hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCHHHHHH
Q 001363 21 FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALN 95 (1092)
Q Consensus 21 ~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~ 95 (1092)
|.++...+++=-....+ ...-+-.+..|++++|+..+.++....... ....-..-+++...++..+|+.
T Consensus 133 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~~~~~~l~~~~~~~~a~~ 206 (287)
T 3qou_A 133 YTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------RYQGLVAQIELLXQAADTPEIQ 206 (287)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------HHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------HHHHHHHHHHHHhhcccCccHH
Confidence 55555555543222221 233345567788888888888763332211 1122233344555666677777
Q ss_pred HHHhhccccCCCCHHHHHHHHHhhcc
Q 001363 96 ILKKDLKDFAPGNEELFKELAQLLTL 121 (1092)
Q Consensus 96 ~l~~~l~~~~~~~~~~~~~l~~~~~~ 121 (1092)
.|++-+.- .+.+.+....|+.++..
T Consensus 207 ~l~~al~~-~P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 207 QLQQQVAE-NPEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCccHHHHHHHHHHHHH
Confidence 77765442 23455555566666554
No 421
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=23.30 E-value=6.1e+02 Score=25.87 Aligned_cols=117 Identities=9% Similarity=0.118 Sum_probs=69.7
Q ss_pred CCeEEEEEcCC--CCCEEEEEeCCCcEEEEEcCC-------ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001363 844 PTATSLAFNPH--DNNVIAIGMDDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914 (1092)
Q Consensus 844 ~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iwd 914 (1092)
..|.++...++ +..+|+..+..|.++...+.. |...-.+.. .+.+..+....++..++..+.+|.+..+.
T Consensus 100 e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~ 178 (312)
T 1suu_A 100 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFN 178 (312)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 34555433321 356788899999999888743 222333443 45676666665567788889999998888
Q ss_pred cCCCce-----eeeeeeecCCCCcCCCCCceEEEEccCCCEEEE-EeCCcEEEEEcCC
Q 001363 915 VDGWGI-----QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 966 (1092)
Q Consensus 915 ~~~~~~-----~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~i~lwd~~~ 966 (1092)
.+.-.. .....+....+ ..|.++..-.++..+++ +..|..+..++..
T Consensus 179 ~~ev~~~gR~~~Gv~~i~L~~~-----d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 179 SRDVRLTNRGTQGVCGMKLKEG-----DLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp GGGSCBCCTTBCCEECCCCCTT-----CCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred HHHccccCCCCCCeEeEEeCCC-----CEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 765111 11112222211 24666655555554444 7788888888753
No 422
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=22.62 E-value=93 Score=23.07 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHhhhhcChhHHHHHHHHhcCC
Q 001363 4 LNKDLVFLILQFLNEEGFTESAHMLERESRF 34 (1092)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Es~~ 34 (1092)
.++.+.|||+--|.-=||.+.|..|-.+-+.
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~ 45 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKA 45 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 4678899999999999999999999888775
No 423
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=22.48 E-value=4.7e+02 Score=24.85 Aligned_cols=110 Identities=13% Similarity=-0.008 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhhcC-hhHHHHHHHHhcCCCh---h--HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHh
Q 001363 6 KDLVFLILQFLNEEG-FTESAHMLERESRFYF---D--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1092)
Q Consensus 6 ~~~~~li~q~L~~~g-~~~s~~~L~~Es~~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q 79 (1092)
.++...+...+...| |.++...+++=..... + ...-.-....|++++|+.++.+....+... . ...++..
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~--~~~~~~~ 146 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP--E--RSRVFEN 146 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCT--T--HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCc--c--cHHHHHH
Confidence 344555555556666 6666665554322211 1 222344566888888888887752210111 1 1111111
Q ss_pred hhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhc
Q 001363 80 NFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1092)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~~~ 120 (1092)
.-.-++..|++++|+..+++-+.-. +.+...+..|+.+..
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 1222345788888888888754322 234444445554443
No 424
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=22.27 E-value=3e+02 Score=21.91 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=48.2
Q ss_pred HHHHhhhhcChhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhc
Q 001363 11 LILQFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEAL 85 (1092)
Q Consensus 11 li~q~L~~~g~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell 85 (1092)
+...++...-|.++...+++=-....+ ...=.-....|+|++|+..+.......... . .+.+ ..-.-+.
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~----~~a~~~~ 83 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-G-KGYS----RKAAALE 83 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-H-HHHH----HHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-H-HHHH----HHHHHHH
Confidence 344444444477777666653222111 122233455788888888877642221111 0 0111 1111234
Q ss_pred cCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001363 86 DGHDIAKALNILKKDLKDFAPGNEELFKELA 116 (1092)
Q Consensus 86 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1092)
..|++.+|+..+++-+. +.+.++.....+.
T Consensus 84 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~ 113 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK-HEANNPQLKEGLQ 113 (118)
T ss_dssp HTTCHHHHHHHHHHHHT-TCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH-cCCCCHHHHHHHH
Confidence 57888888888877543 2223444434443
No 425
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=22.11 E-value=55 Score=32.09 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=27.1
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHhcCCChhHHHHHHHhcCcC
Q 001363 8 LVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGK 49 (1092)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~L~~Es~~~~~~~~~~~~i~~g~ 49 (1092)
+|+-+++||++.|+. +-|-+-+|-.-+++.+++.+..|.
T Consensus 40 iv~~~i~~i~~~gl~---eGIfR~~G~~~~i~~L~~~~~~~~ 78 (229)
T 3iug_A 40 VLQSCTAFIERYGIV---DGIYRLSGVASNIQRLRHEFDSEH 78 (229)
T ss_dssp HHHHHHHHHHHHCCS---TTTTTSCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCC---CCCeecCCcHHHHHHHHHHHhcCC
Confidence 677788999998862 334444444445888998887763
No 426
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=22.11 E-value=3.7e+02 Score=25.73 Aligned_cols=107 Identities=9% Similarity=-0.008 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhhcC-hhHHHHHHHHhcCCCh---h--HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhh
Q 001363 7 DLVFLILQFLNEEG-FTESAHMLERESRFYF---D--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1092)
Q Consensus 7 ~~~~li~q~L~~~g-~~~s~~~L~~Es~~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 80 (1092)
++...+...+...| |.++...+++=-.... + ...-.-....|+|++|+.++.......... ..++...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l 111 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN------ARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc------HHHHHHH
Confidence 44455555555666 7777766655322211 1 222344567899999999988752222111 1112222
Q ss_pred hhhhccCCCHHHHHHHHHhhcc-ccCCCCHHHHHHHHHhh
Q 001363 81 FFEALDGHDIAKALNILKKDLK-DFAPGNEELFKELAQLL 119 (1092)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~l~-~~~~~~~~~~~~l~~~~ 119 (1092)
-.-+...|++.+|+..+++-+. |..+.....+..++.+.
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~ 151 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS 151 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH
Confidence 2223568999999999998766 11122334444455443
No 427
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.07 E-value=97 Score=27.00 Aligned_cols=24 Identities=29% Similarity=0.086 Sum_probs=16.9
Q ss_pred hhhhhccCCCHHHHHHHHHhhccc
Q 001363 80 NFFEALDGHDIAKALNILKKDLKD 103 (1092)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~l~~ 103 (1092)
..-||+..++..+|.+++++--.|
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~~p 36 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELEVP 36 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCC
Confidence 345777788888888888873333
No 428
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.76 E-value=96 Score=27.98 Aligned_cols=21 Identities=33% Similarity=0.180 Sum_probs=15.9
Q ss_pred hhhhhccCCCHHHHHHHHHhh
Q 001363 80 NFFEALDGHDIAKALNILKKD 100 (1092)
Q Consensus 80 ~~~Ell~~~~~~~a~~~l~~~ 100 (1092)
..-||+..++..+|.+++++-
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 345777788888888888873
No 429
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=21.56 E-value=7.5e+02 Score=26.27 Aligned_cols=199 Identities=11% Similarity=0.072 Sum_probs=96.9
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEEcCCc-e----------eeEeeccc-cCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001363 845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSS-E----------VISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFV 912 (1092)
Q Consensus 845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~----------~~~~l~~h-~~~V~~l~~spdg~~l~s~s~Dg~I~i 912 (1092)
.|..++.. ....+.-..||.|+.|-.... + ....+... ...|..++.. ..+.+....||.|..
T Consensus 122 ~i~~ia~G---~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 122 RIKQIACG---DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYG 196 (406)
T ss_dssp CEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CEEEEEEC---hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCCEEE
Confidence 67777764 446666788999999975431 1 11122211 2256666654 345555678999999
Q ss_pred EEcCCCc---------eeeeeeeecCCCCcCCCCCceEEEEccCCCEEEEEeCCcEEEEEcCCceee----------eee
Q 001363 913 WDVDGWG---------IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL----------KQW 973 (1092)
Q Consensus 913 wd~~~~~---------~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~i~lwd~~~~~~~----------~~~ 973 (1092)
|-..... ......+....+ ..|..++.... ..++...++.|+.|-....-.+ ...
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~v~~~~~-----~~i~~va~G~~-ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~ 270 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPERVTSTGG-----EKMSMVACGWR-HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK 270 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEECCCSTT-----CCEEEEEECSS-EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred eeCCCCCCCCCCCCCCcCccEEecccCC-----ceEEEEEECCC-cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEE
Confidence 9644311 001111111111 13444443322 2233467788888864321111 111
Q ss_pred cc-CCCCCEEEEEEecCCCEEEEEECCCcEEEEEcCCCceE------EeeccccccCCCCccccccceEEEECCCCCCEE
Q 001363 974 FP-ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ------CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1046 (1092)
Q Consensus 974 ~~-~h~~~v~~l~fs~dg~~l~t~~~Dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1046 (1092)
.. .....|..++- -..+.+.-..||.|+.|=....-.+ ....+...... ....| ..++.- ....
T Consensus 271 v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~--~~~~v--~~va~G---~~hs 341 (406)
T 4d9s_A 271 LEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP--DDQKV--VQVSCG---WRHT 341 (406)
T ss_dssp CGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG--GGCCE--EEEEEC---SSEE
T ss_pred ecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc--CCCcE--EEEEeC---CCeE
Confidence 11 11234555543 3345555568999999964432111 11110000000 01112 233333 3566
Q ss_pred EEEeCCCcEEEEecCCC
Q 001363 1047 AVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus 1047 ~~~~~dg~v~~w~~~~~ 1063 (1092)
++-..||.|+.|--.+.
T Consensus 342 ~alt~~G~v~~wG~n~~ 358 (406)
T 4d9s_A 342 LAVTERNNVFAWGRGTN 358 (406)
T ss_dssp EEEETTSCEEEEECCTT
T ss_pred EEEeCCCCEEEecCCCC
Confidence 67778999999997543
No 430
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=21.54 E-value=3.3e+02 Score=22.15 Aligned_cols=89 Identities=12% Similarity=-0.008 Sum_probs=42.4
Q ss_pred HHHHHHHhhhhcC-hhHHHHHHHHhcCCCh---h--HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhh
Q 001363 8 LVFLILQFLNEEG-FTESAHMLERESRFYF---D--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1092)
Q Consensus 8 ~~~li~q~L~~~g-~~~s~~~L~~Es~~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1092)
....+...+...| |.++...+++=..... + ...-.-....|+|++|+..+.......... ..+.+.+ -
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~----~ 87 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRM----G 87 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----H
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHH----H
Confidence 3334444444444 6666655554222111 1 222233456788888888876642221111 0011111 1
Q ss_pred hhhccCCCHHHHHHHHHhhcc
Q 001363 82 FEALDGHDIAKALNILKKDLK 102 (1092)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~ 102 (1092)
.=+...|++.+|+..+++-+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 112356778888888876433
No 431
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=21.01 E-value=2.3e+02 Score=23.30 Aligned_cols=54 Identities=13% Similarity=0.287 Sum_probs=28.4
Q ss_pred HHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCHHHHHHHHHhhcc
Q 001363 43 DMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLK 102 (1092)
Q Consensus 43 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~ 102 (1092)
-....|++++|+.++.......... ....+.+ -.-+...|++.+|+..+++-+.
T Consensus 44 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 44 AYYKQGDYDEAIEYYQKALELDPRS--AEAWYNL----GNAYYKQGDYDEAIEYYQKALE 97 (136)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCc--hHHHHHH----HHHHHHhcCHHHHHHHHHHHHH
Confidence 3445688888888876642221111 0011111 1112457788888888877543
No 432
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=20.34 E-value=9.2 Score=31.97 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=25.6
Q ss_pred HHHhcCCChhHHHHHHHhcCcCHHHHHHHhccC
Q 001363 28 LERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1092)
Q Consensus 28 L~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1092)
+-+|||+++++.-+-..|. |+|+++.+.++.+
T Consensus 28 vl~~sGl~y~~~pmgT~IE-Ge~devm~vv~~~ 59 (104)
T 2ibo_A 28 YLQTQEVTMVVTPFETVLE-GEFDELMRILKEA 59 (104)
T ss_dssp HHHHSSSEEEECSSCEEEE-EEHHHHHHHHHHH
T ss_pred HHHHcCCCeEecCCccEEE-cCHHHHHHHHHHH
Confidence 3348999998877777775 9999999998754
Done!