Query 001367
Match_columns 1091
No_of_seqs 953 out of 4661
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 23:00:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 3.4E-72 7.4E-77 553.2 34.2 492 5-652 17-513 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 4.2E-63 9.1E-68 472.9 31.7 492 4-650 6-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 1.6E-59 3.4E-64 498.2 48.0 576 340-1008 25-620 (775)
4 KOG0319 WD40-repeat-containing 100.0 2.5E-56 5.4E-61 473.9 44.6 589 292-965 18-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 4.2E-52 9E-57 424.3 62.0 575 338-1007 22-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 1E-49 2.2E-54 423.4 62.4 590 291-1014 12-716 (893)
7 KOG0291 WD40-repeat-containing 100.0 2.6E-49 5.7E-54 420.2 62.9 579 401-1059 19-708 (893)
8 KOG0318 WD40 repeat stress pro 100.0 2.3E-49 4.9E-54 404.3 58.3 541 327-964 52-602 (603)
9 KOG0306 WD40-repeat-containing 100.0 8.8E-49 1.9E-53 416.1 51.8 569 343-1012 31-669 (888)
10 KOG0306 WD40-repeat-containing 100.0 1.8E-48 3.9E-53 413.7 49.4 503 335-967 66-667 (888)
11 KOG0271 Notchless-like WD40 re 100.0 1.5E-50 3.2E-55 396.4 28.0 333 324-713 105-479 (480)
12 KOG0271 Notchless-like WD40 re 100.0 1.8E-49 3.9E-54 388.8 29.9 367 392-913 111-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 1.5E-42 3.3E-47 365.1 39.6 624 337-1061 40-714 (1080)
14 KOG1408 WD40 repeat protein [F 100.0 7.1E-41 1.5E-45 352.6 41.4 509 328-916 72-714 (1080)
15 KOG1063 RNA polymerase II elon 100.0 4.3E-39 9.2E-44 340.1 46.9 606 340-1007 20-763 (764)
16 KOG0273 Beta-transducin family 100.0 1.9E-40 4.2E-45 334.9 35.0 345 322-762 167-522 (524)
17 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-41 6.4E-46 336.4 23.1 284 331-650 172-458 (459)
18 KOG1539 WD repeat protein [Gen 100.0 3.8E-37 8.2E-42 332.1 55.7 581 340-1059 39-647 (910)
19 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-40 5.2E-45 329.9 22.4 285 394-713 173-458 (459)
20 KOG0286 G-protein beta subunit 100.0 1.9E-38 4.2E-43 301.2 33.1 295 325-650 46-343 (343)
21 KOG0279 G protein beta subunit 100.0 1.1E-38 2.4E-43 301.2 31.1 298 326-652 7-313 (315)
22 KOG0276 Vesicle coat complex C 100.0 1.5E-37 3.2E-42 323.8 42.0 480 327-915 6-490 (794)
23 KOG1539 WD repeat protein [Gen 100.0 6.3E-35 1.4E-39 315.0 52.9 558 331-1008 73-649 (910)
24 KOG0286 G-protein beta subunit 100.0 4E-37 8.6E-42 292.3 31.5 287 391-713 50-343 (343)
25 KOG0315 G-protein beta subunit 100.0 8.2E-37 1.8E-41 283.2 31.2 293 345-672 8-308 (311)
26 KOG1063 RNA polymerase II elon 100.0 1.6E-35 3.4E-40 313.2 43.4 598 402-1060 20-763 (764)
27 KOG0279 G protein beta subunit 100.0 7.5E-36 1.6E-40 282.1 32.0 295 730-1060 12-313 (315)
28 KOG0263 Transcription initiati 100.0 8.4E-36 1.8E-40 322.3 35.7 277 319-610 363-651 (707)
29 KOG0276 Vesicle coat complex C 100.0 1.9E-34 4.2E-39 300.6 42.7 476 392-964 9-490 (794)
30 KOG0292 Vesicle coat complex C 100.0 5.3E-34 1.2E-38 308.4 46.5 582 330-1009 5-596 (1202)
31 KOG0295 WD40 repeat-containing 100.0 3E-36 6.6E-41 295.0 26.0 292 325-651 99-405 (406)
32 KOG0296 Angio-associated migra 100.0 2.1E-35 4.5E-40 289.4 29.6 335 325-715 55-398 (399)
33 KOG2106 Uncharacterized conser 100.0 2.2E-32 4.7E-37 278.5 50.8 535 325-1006 57-625 (626)
34 KOG0285 Pleiotropic regulator 100.0 2.9E-35 6.2E-40 286.7 26.4 301 318-654 135-441 (460)
35 KOG0296 Angio-associated migra 100.0 6.1E-34 1.3E-38 279.2 34.6 339 436-915 59-398 (399)
36 KOG0315 G-protein beta subunit 100.0 8.6E-34 1.9E-38 263.2 32.1 295 500-894 11-309 (311)
37 KOG2106 Uncharacterized conser 100.0 4.1E-32 8.9E-37 276.5 47.2 533 436-1059 61-625 (626)
38 KOG0273 Beta-transducin family 100.0 7E-34 1.5E-38 287.6 30.3 279 335-652 236-523 (524)
39 KOG0265 U5 snRNP-specific prot 100.0 9E-34 2E-38 270.8 27.9 291 328-650 41-336 (338)
40 KOG0645 WD40 repeat protein [G 100.0 4.9E-33 1.1E-37 261.9 32.2 292 326-652 6-311 (312)
41 KOG2048 WD40 repeat protein [G 100.0 5.4E-30 1.2E-34 271.4 55.8 550 396-1060 25-601 (691)
42 KOG0292 Vesicle coat complex C 100.0 1.2E-31 2.6E-36 290.3 43.6 497 392-1005 5-516 (1202)
43 KOG0316 Conserved WD40 repeat- 100.0 6.3E-33 1.4E-37 255.1 25.4 292 321-650 4-297 (307)
44 KOG0265 U5 snRNP-specific prot 100.0 8.4E-33 1.8E-37 264.2 26.8 286 392-711 43-334 (338)
45 KOG0295 WD40 repeat-containing 100.0 2.6E-33 5.7E-38 274.5 23.2 285 392-713 104-404 (406)
46 KOG0282 mRNA splicing factor [ 100.0 4.4E-34 9.4E-39 290.6 17.8 296 321-650 201-503 (503)
47 KOG0284 Polyadenylation factor 100.0 1.4E-33 3E-38 280.3 19.3 285 332-652 94-380 (464)
48 KOG0266 WD40 repeat-containing 100.0 3.5E-32 7.6E-37 307.8 33.0 294 327-652 151-454 (456)
49 KOG0293 WD40 repeat-containing 100.0 5.5E-33 1.2E-37 275.8 22.8 292 391-715 219-513 (519)
50 KOG0285 Pleiotropic regulator 100.0 4.6E-32 1E-36 264.4 26.6 294 391-763 146-439 (460)
51 KOG2048 WD40 repeat protein [G 100.0 1.4E-28 3.1E-33 260.7 53.7 549 332-964 23-601 (691)
52 KOG0645 WD40 repeat protein [G 100.0 9.3E-31 2E-35 246.6 31.5 292 730-1060 11-311 (312)
53 KOG0263 Transcription initiati 100.0 4.2E-32 9.1E-37 293.8 24.0 264 732-1009 377-651 (707)
54 cd00200 WD40 WD40 domain, foun 100.0 1.8E-30 4E-35 282.4 36.2 287 328-650 3-289 (289)
55 KOG0284 Polyadenylation factor 100.0 3E-32 6.5E-37 270.8 17.4 280 623-1006 97-379 (464)
56 KOG0281 Beta-TrCP (transducin 100.0 2.9E-32 6.3E-37 264.4 15.8 277 332-656 195-481 (499)
57 KOG0266 WD40 repeat-containing 100.0 3.4E-30 7.3E-35 291.6 31.9 290 395-715 158-454 (456)
58 KOG0316 Conserved WD40 repeat- 100.0 2.3E-30 4.9E-35 238.3 23.2 268 390-675 11-281 (307)
59 KOG0282 mRNA splicing factor [ 100.0 2.1E-31 4.6E-36 271.1 17.2 290 391-713 209-503 (503)
60 KOG0278 Serine/threonine kinas 100.0 1E-30 2.2E-35 242.7 18.3 289 328-656 8-301 (334)
61 KOG1445 Tumor-specific antigen 100.0 3.8E-28 8.2E-33 253.5 37.0 684 325-1070 70-854 (1012)
62 PLN00181 protein SPA1-RELATED; 100.0 1.3E-28 2.7E-33 301.8 39.4 294 330-651 479-792 (793)
63 KOG0281 Beta-TrCP (transducin 100.0 6.8E-31 1.5E-35 254.9 14.6 275 395-720 196-482 (499)
64 cd00200 WD40 WD40 domain, foun 100.0 1.3E-28 2.8E-33 267.9 34.1 285 392-713 5-289 (289)
65 KOG0288 WD40 repeat protein Ti 100.0 9.9E-30 2.1E-34 253.5 18.5 297 320-649 161-458 (459)
66 KOG0275 Conserved WD40 repeat- 100.0 2.5E-29 5.5E-34 241.6 19.2 289 394-713 211-507 (508)
67 PLN00181 protein SPA1-RELATED; 100.0 1.8E-27 4E-32 291.5 40.7 322 356-762 457-792 (793)
68 KOG0310 Conserved WD40 repeat- 100.0 2.6E-28 5.7E-33 249.3 26.8 286 329-651 22-308 (487)
69 KOG0640 mRNA cleavage stimulat 100.0 5.4E-28 1.2E-32 231.5 26.2 316 325-652 103-426 (430)
70 KOG0641 WD40 repeat protein [G 100.0 6.3E-27 1.4E-31 213.9 32.0 312 324-652 23-349 (350)
71 KOG0973 Histone transcription 100.0 5.4E-28 1.2E-32 271.5 29.3 307 332-654 11-357 (942)
72 KOG1407 WD40 repeat protein [F 100.0 2.1E-27 4.5E-32 222.7 28.2 279 328-643 14-293 (313)
73 KOG0278 Serine/threonine kinas 100.0 4.5E-29 9.8E-34 231.7 16.3 286 392-718 10-300 (334)
74 KOG0643 Translation initiation 100.0 9.3E-28 2E-32 225.6 24.8 287 329-653 5-318 (327)
75 KOG0643 Translation initiation 100.0 2.2E-27 4.7E-32 223.2 27.1 286 391-715 5-317 (327)
76 KOG1446 Histone H3 (Lys4) meth 100.0 2.8E-26 6E-31 222.7 33.9 287 330-652 10-303 (311)
77 KOG0313 Microtubule binding pr 100.0 3.5E-27 7.5E-32 233.0 25.6 282 332-652 103-418 (423)
78 KOG0283 WD40 repeat-containing 100.0 1.3E-27 2.8E-32 261.7 24.3 310 325-654 257-578 (712)
79 KOG0640 mRNA cleavage stimulat 100.0 2.3E-27 5E-32 227.2 22.3 307 622-1007 112-426 (430)
80 PTZ00421 coronin; Provisional 100.0 6.1E-26 1.3E-30 254.6 35.8 288 333-633 19-314 (493)
81 KOG0313 Microtubule binding pr 100.0 2.6E-26 5.7E-31 226.8 27.6 285 439-915 103-418 (423)
82 KOG0973 Histone transcription 100.0 1.1E-26 2.5E-31 260.9 28.3 304 732-1063 12-358 (942)
83 KOG0274 Cdc4 and related F-box 100.0 1.5E-26 3.3E-31 259.0 29.3 284 332-660 206-490 (537)
84 KOG0277 Peroxisomal targeting 100.0 6.2E-27 1.3E-31 218.6 21.5 285 337-651 11-308 (311)
85 KOG0310 Conserved WD40 repeat- 100.0 1.9E-26 4E-31 235.9 26.0 284 732-1061 25-310 (487)
86 KOG0772 Uncharacterized conser 100.0 9.4E-27 2E-31 238.2 23.3 309 319-652 152-487 (641)
87 KOG0305 Anaphase promoting com 100.0 3.1E-26 6.8E-31 245.2 28.0 280 336-654 179-463 (484)
88 KOG1446 Histone H3 (Lys4) meth 100.0 3.6E-25 7.7E-30 215.0 32.3 271 392-675 10-286 (311)
89 KOG1407 WD40 repeat protein [F 100.0 7.7E-26 1.7E-30 212.2 26.4 255 392-661 16-270 (313)
90 KOG0772 Uncharacterized conser 99.9 9.2E-27 2E-31 238.3 21.4 313 659-1062 162-490 (641)
91 KOG0299 U3 snoRNP-associated p 99.9 5.5E-26 1.2E-30 230.5 25.6 293 327-641 135-444 (479)
92 KOG0647 mRNA export protein (c 99.9 1.2E-25 2.6E-30 215.6 26.4 276 333-641 26-312 (347)
93 KOG0300 WD40 repeat-containing 99.9 4.3E-26 9.3E-31 219.0 22.0 298 324-716 138-477 (481)
94 KOG2096 WD40 repeat protein [G 99.9 1.1E-25 2.3E-30 216.9 24.4 311 657-1009 79-404 (420)
95 KOG0283 WD40 repeat-containing 99.9 6.5E-26 1.4E-30 248.5 26.1 277 731-1010 265-579 (712)
96 PTZ00420 coronin; Provisional 99.9 1.2E-24 2.7E-29 244.3 36.7 237 392-634 70-318 (568)
97 KOG0301 Phospholipase A2-activ 99.9 2.1E-25 4.5E-30 237.2 27.7 284 325-654 5-290 (745)
98 KOG0288 WD40 repeat protein Ti 99.9 1.2E-26 2.5E-31 231.7 17.2 285 392-713 171-459 (459)
99 KOG0308 Conserved WD40 repeat- 99.9 7.2E-26 1.6E-30 238.6 23.7 295 332-653 19-328 (735)
100 KOG0268 Sof1-like rRNA process 99.9 1.8E-26 3.9E-31 226.3 15.5 293 325-657 57-350 (433)
101 KOG1963 WD40 repeat protein [G 99.9 6.9E-23 1.5E-27 225.4 44.5 521 392-1013 12-589 (792)
102 PTZ00421 coronin; Provisional 99.9 2.4E-24 5.2E-29 241.8 33.2 270 395-674 19-313 (493)
103 KOG0308 Conserved WD40 repeat- 99.9 1.4E-25 3E-30 236.5 21.2 356 401-839 29-402 (735)
104 KOG0268 Sof1-like rRNA process 99.9 4.5E-26 9.8E-31 223.5 15.6 284 436-764 61-346 (433)
105 KOG0647 mRNA export protein (c 99.9 1E-24 2.2E-29 209.2 24.2 275 393-680 24-309 (347)
106 KOG1445 Tumor-specific antigen 99.9 5.5E-24 1.2E-28 222.6 31.5 216 391-612 74-297 (1012)
107 KOG0641 WD40 repeat protein [G 99.9 1E-23 2.2E-28 192.9 29.3 299 393-763 29-349 (350)
108 KOG0277 Peroxisomal targeting 99.9 7.1E-25 1.5E-29 204.9 22.0 200 800-1006 103-308 (311)
109 KOG0289 mRNA splicing factor [ 99.9 1.3E-24 2.8E-29 218.3 24.9 281 397-713 220-504 (506)
110 KOG0274 Cdc4 and related F-box 99.9 9E-25 1.9E-29 244.8 26.4 277 395-718 207-485 (537)
111 KOG0294 WD40 repeat-containing 99.9 4.5E-24 9.8E-29 206.0 27.3 241 798-1062 40-283 (362)
112 KOG0289 mRNA splicing factor [ 99.9 4.5E-24 9.8E-29 214.4 28.1 282 335-651 220-505 (506)
113 KOG0299 U3 snoRNP-associated p 99.9 2E-24 4.3E-29 219.3 24.7 268 392-673 138-434 (479)
114 KOG0305 Anaphase promoting com 99.9 2.1E-24 4.5E-29 231.3 25.0 275 400-716 181-462 (484)
115 KOG2096 WD40 repeat protein [G 99.9 2.2E-23 4.8E-28 201.0 27.4 297 326-651 78-401 (420)
116 KOG1036 Mitotic spindle checkp 99.9 3E-23 6.5E-28 200.4 27.6 270 334-642 13-294 (323)
117 KOG1274 WD40 repeat protein [G 99.9 9.3E-21 2E-25 208.8 50.4 279 331-649 10-297 (933)
118 KOG1332 Vesicle coat complex C 99.9 2.5E-24 5.4E-29 200.1 18.1 252 391-652 6-286 (299)
119 PTZ00420 coronin; Provisional 99.9 1.2E-22 2.6E-27 228.4 34.0 250 414-675 50-317 (568)
120 KOG1274 WD40 repeat protein [G 99.9 4.8E-20 1E-24 203.2 51.8 277 393-686 10-292 (933)
121 KOG0300 WD40 repeat-containing 99.9 2E-23 4.2E-28 200.8 22.0 329 613-1008 141-477 (481)
122 KOG0294 WD40 repeat-containing 99.9 4.2E-23 9.2E-28 199.4 24.2 272 411-718 4-284 (362)
123 KOG0639 Transducin-like enhanc 99.9 1.3E-23 2.7E-28 214.4 20.6 287 332-651 417-703 (705)
124 KOG1963 WD40 repeat protein [G 99.9 5.5E-21 1.2E-25 210.5 42.5 515 438-1066 13-589 (792)
125 KOG0301 Phospholipase A2-activ 99.9 3.7E-23 8.1E-28 220.2 22.9 278 392-715 10-288 (745)
126 KOG0264 Nucleosome remodeling 99.9 3.4E-23 7.3E-28 210.9 21.3 266 330-609 120-405 (422)
127 KOG2055 WD40 repeat protein [G 99.9 1.7E-22 3.6E-27 205.1 25.8 289 578-1007 213-512 (514)
128 KOG4283 Transcription-coupled 99.9 2.2E-22 4.8E-27 192.0 24.5 319 331-714 40-364 (397)
129 KOG2055 WD40 repeat protein [G 99.9 1.6E-22 3.4E-27 205.3 24.5 287 335-652 214-512 (514)
130 KOG1273 WD40 repeat protein [G 99.9 2.9E-22 6.3E-27 193.1 24.7 299 321-654 12-324 (405)
131 KOG0646 WD40 repeat protein [G 99.9 3.1E-22 6.8E-27 203.9 24.8 293 349-675 9-330 (476)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.6E-21 1.2E-25 209.3 36.7 289 349-673 3-299 (300)
133 KOG1538 Uncharacterized conser 99.9 2.4E-21 5.3E-26 204.2 30.6 456 443-960 14-520 (1081)
134 KOG1332 Vesicle coat complex C 99.9 1.4E-22 3E-27 188.6 18.7 255 329-608 6-286 (299)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2E-20 4.3E-25 204.9 39.4 279 591-1016 2-288 (300)
136 KOG4283 Transcription-coupled 99.9 1.3E-21 2.7E-26 186.9 25.3 305 731-1059 41-364 (397)
137 KOG0639 Transducin-like enhanc 99.9 3.8E-22 8.2E-27 203.7 21.0 283 527-872 417-703 (705)
138 KOG1036 Mitotic spindle checkp 99.9 3.3E-21 7.1E-26 186.4 26.1 269 395-681 12-291 (323)
139 KOG1273 WD40 repeat protein [G 99.9 8.5E-22 1.8E-26 190.0 21.7 282 399-715 26-322 (405)
140 KOG4328 WD40 protein [Function 99.9 1.7E-21 3.7E-26 197.7 24.8 304 326-652 178-495 (498)
141 KOG0646 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 199.9 23.3 254 348-633 52-330 (476)
142 KOG0650 WD40 repeat nucleolar 99.9 1.2E-21 2.5E-26 204.9 22.5 325 315-712 381-732 (733)
143 KOG1538 Uncharacterized conser 99.9 3.6E-20 7.9E-25 195.4 33.8 277 330-653 10-294 (1081)
144 KOG0267 Microtubule severing p 99.9 8.8E-23 1.9E-27 218.1 11.1 236 392-643 24-259 (825)
145 KOG0264 Nucleosome remodeling 99.9 5.1E-21 1.1E-25 195.1 23.1 252 393-653 121-405 (422)
146 KOG0650 WD40 repeat nucleolar 99.9 6.5E-21 1.4E-25 199.3 23.6 321 568-961 393-732 (733)
147 KOG0269 WD40 repeat-containing 99.9 1.7E-20 3.7E-25 202.5 21.3 236 744-1009 99-342 (839)
148 KOG0269 WD40 repeat-containing 99.9 1.2E-20 2.7E-25 203.6 18.4 285 397-712 40-337 (839)
149 KOG0321 WD40 repeat-containing 99.9 2.7E-20 5.9E-25 196.5 20.0 313 340-715 55-391 (720)
150 KOG0267 Microtubule severing p 99.9 1.9E-21 4.1E-26 208.0 11.1 239 328-600 22-260 (825)
151 KOG1034 Transcriptional repres 99.8 2.1E-19 4.5E-24 175.0 23.3 295 328-652 32-383 (385)
152 KOG0321 WD40 repeat-containing 99.8 1.5E-19 3.4E-24 190.9 24.3 289 746-1063 65-394 (720)
153 KOG1009 Chromatin assembly com 99.8 3.6E-19 7.8E-24 178.5 24.6 308 329-656 9-376 (434)
154 KOG2445 Nuclear pore complex c 99.8 8.7E-19 1.9E-23 169.2 25.5 268 331-619 10-332 (361)
155 KOG2445 Nuclear pore complex c 99.8 7.1E-19 1.5E-23 169.8 24.8 257 392-654 9-320 (361)
156 KOG0307 Vesicle coat complex C 99.8 2E-20 4.3E-25 211.9 15.4 296 337-654 9-329 (1049)
157 KOG1034 Transcriptional repres 99.8 2.6E-19 5.7E-24 174.2 20.9 300 731-1060 36-383 (385)
158 KOG0270 WD40 repeat-containing 99.8 1.6E-19 3.5E-24 183.0 19.8 252 399-658 176-455 (463)
159 KOG4378 Nuclear protein COP1 [ 99.8 4.8E-19 1E-23 181.1 22.2 294 350-676 7-305 (673)
160 KOG4497 Uncharacterized conser 99.8 1.2E-18 2.6E-23 169.3 23.5 407 401-908 13-425 (447)
161 COG2319 FOG: WD40 repeat [Gene 99.8 1E-16 2.2E-21 186.5 43.6 369 329-764 60-443 (466)
162 COG2319 FOG: WD40 repeat [Gene 99.8 3.5E-16 7.6E-21 181.9 47.9 372 437-916 61-443 (466)
163 KOG4328 WD40 protein [Function 99.8 7.9E-19 1.7E-23 178.5 21.5 306 655-1008 177-496 (498)
164 KOG0302 Ribosome Assembly prot 99.8 9E-19 2E-23 173.6 21.1 265 328-605 145-435 (440)
165 KOG4378 Nuclear protein COP1 [ 99.8 2.2E-18 4.9E-23 176.3 24.6 294 593-989 5-305 (673)
166 KOG1912 WD40 repeat protein [G 99.8 7.9E-17 1.7E-21 173.9 34.5 598 336-1011 17-745 (1062)
167 KOG1009 Chromatin assembly com 99.8 1.6E-17 3.5E-22 166.8 26.8 303 733-1064 13-376 (434)
168 KOG1524 WD40 repeat-containing 99.8 7.4E-17 1.6E-21 166.8 31.6 499 394-1063 12-526 (737)
169 KOG1912 WD40 repeat protein [G 99.8 2.9E-16 6.3E-21 169.6 35.6 487 397-944 16-572 (1062)
170 KOG2919 Guanine nucleotide-bin 99.8 1.9E-17 4.1E-22 160.9 23.2 286 337-643 52-361 (406)
171 KOG0303 Actin-binding protein 99.8 1.6E-17 3.5E-22 165.7 23.1 237 391-633 76-320 (472)
172 KOG0644 Uncharacterized conser 99.8 3.2E-19 7E-24 193.5 11.8 286 326-657 182-473 (1113)
173 KOG0302 Ribosome Assembly prot 99.8 3.5E-18 7.6E-23 169.5 18.1 173 324-518 201-379 (440)
174 KOG2919 Guanine nucleotide-bin 99.8 2.5E-17 5.3E-22 160.1 23.2 190 804-998 161-361 (406)
175 KOG0270 WD40 repeat-containing 99.8 3.9E-18 8.5E-23 173.1 17.9 213 330-569 239-455 (463)
176 KOG4227 WD40 repeat protein [G 99.8 3.2E-17 7E-22 162.7 20.7 302 326-652 48-387 (609)
177 KOG1334 WD40 repeat protein [G 99.8 3E-18 6.5E-23 175.6 13.8 302 325-654 133-468 (559)
178 KOG0303 Actin-binding protein 99.8 2.9E-17 6.3E-22 163.9 19.8 238 329-590 76-321 (472)
179 KOG0322 G-protein beta subunit 99.8 1E-17 2.2E-22 158.2 15.7 293 323-651 3-322 (323)
180 KOG0322 G-protein beta subunit 99.8 1.7E-17 3.6E-22 156.8 17.1 304 568-914 7-322 (323)
181 KOG1524 WD40 repeat-containing 99.8 6.9E-16 1.5E-20 159.8 30.4 498 332-966 12-525 (737)
182 KOG0307 Vesicle coat complex C 99.8 4.2E-18 9.1E-23 193.3 14.0 251 336-611 66-330 (1049)
183 KOG4497 Uncharacterized conser 99.8 4.4E-16 9.5E-21 151.7 25.1 335 535-954 14-421 (447)
184 KOG0649 WD40 repeat protein [G 99.7 1.3E-15 2.7E-20 142.3 26.2 288 735-1058 12-314 (325)
185 KOG0642 Cell-cycle nuclear pro 99.7 1.9E-17 4.2E-22 173.3 15.4 262 391-663 289-572 (577)
186 KOG4227 WD40 repeat protein [G 99.7 1.9E-16 4E-21 157.3 19.7 295 391-715 51-387 (609)
187 KOG0649 WD40 repeat protein [G 99.7 1.5E-15 3.3E-20 141.7 24.2 281 336-649 12-313 (325)
188 KOG0642 Cell-cycle nuclear pro 99.7 6.3E-17 1.4E-21 169.5 16.8 270 326-618 286-571 (577)
189 PRK11028 6-phosphogluconolacto 99.7 1.6E-14 3.5E-19 159.0 37.1 198 805-1007 83-304 (330)
190 KOG2110 Uncharacterized conser 99.7 1.4E-14 3E-19 144.4 32.1 243 396-655 5-251 (391)
191 KOG1007 WD repeat protein TSSC 99.7 5.4E-16 1.2E-20 148.5 20.8 258 328-608 57-361 (370)
192 KOG0290 Conserved WD40 repeat- 99.7 1.3E-15 2.9E-20 146.0 23.3 289 327-648 38-361 (364)
193 KOG0644 Uncharacterized conser 99.7 2.7E-17 5.8E-22 178.8 12.3 288 566-918 181-471 (1113)
194 KOG1310 WD40 repeat protein [G 99.7 6.7E-16 1.4E-20 160.4 21.2 176 436-652 45-231 (758)
195 KOG1007 WD repeat protein TSSC 99.7 1.7E-15 3.8E-20 145.0 22.3 184 803-1008 172-362 (370)
196 KOG1188 WD40 repeat protein [G 99.7 3E-16 6.5E-21 154.2 17.2 291 457-762 42-345 (376)
197 KOG2110 Uncharacterized conser 99.7 9.1E-15 2E-19 145.7 27.1 241 801-1063 5-251 (391)
198 PRK11028 6-phosphogluconolacto 99.7 3.8E-14 8.2E-19 156.2 35.4 275 348-652 3-304 (330)
199 KOG1188 WD40 repeat protein [G 99.7 1.4E-15 3.1E-20 149.5 19.7 275 349-652 42-346 (376)
200 KOG1517 Guanine nucleotide bin 99.7 7.5E-15 1.6E-19 164.3 26.1 302 580-1010 1066-1384(1387)
201 KOG0771 Prolactin regulatory e 99.7 5.5E-16 1.2E-20 157.5 15.3 199 805-1009 148-356 (398)
202 KOG0290 Conserved WD40 repeat- 99.7 1.1E-14 2.4E-19 139.8 22.7 242 799-1050 94-356 (364)
203 PRK01742 tolB translocation pr 99.7 1.1E-14 2.4E-19 165.1 24.4 235 356-633 183-426 (429)
204 KOG1832 HIV-1 Vpr-binding prot 99.7 2.1E-16 4.5E-21 172.6 9.5 342 171-641 1014-1378(1516)
205 KOG1587 Cytoplasmic dynein int 99.7 2.5E-14 5.4E-19 159.4 25.9 250 395-654 241-518 (555)
206 PF02239 Cytochrom_D1: Cytochr 99.7 2.9E-13 6.3E-18 147.6 33.6 318 554-973 15-356 (369)
207 KOG0771 Prolactin regulatory e 99.6 3E-15 6.5E-20 152.2 16.3 197 846-1061 148-355 (398)
208 KOG1240 Protein kinase contain 99.6 8.1E-14 1.8E-18 158.9 29.2 257 392-656 1044-1338(1431)
209 PF02239 Cytochrom_D1: Cytochr 99.6 2E-13 4.3E-18 148.9 31.5 330 501-921 8-353 (369)
210 KOG2394 WD40 protein DMR-N9 [G 99.6 4.5E-14 9.7E-19 147.1 24.0 169 810-987 182-384 (636)
211 KOG1517 Guanine nucleotide bin 99.6 4.8E-14 1E-18 158.0 25.7 298 331-654 1061-1383(1387)
212 COG4946 Uncharacterized protei 99.6 6.1E-11 1.3E-15 122.0 44.7 420 342-905 44-508 (668)
213 KOG1334 WD40 repeat protein [G 99.6 4.6E-15 9.9E-20 152.6 15.0 296 392-715 138-466 (559)
214 KOG1240 Protein kinase contain 99.6 7.1E-14 1.5E-18 159.4 25.1 274 324-613 1038-1339(1431)
215 KOG2041 WD40 repeat protein [G 99.6 1.5E-12 3.2E-17 139.8 32.7 508 395-1005 13-617 (1189)
216 KOG1587 Cytoplasmic dynein int 99.6 8.7E-14 1.9E-18 155.0 23.9 253 335-609 243-517 (555)
217 KOG0974 WD-repeat protein WDR6 99.6 1.6E-11 3.5E-16 139.1 41.8 199 443-654 89-290 (967)
218 KOG2111 Uncharacterized conser 99.6 2.5E-12 5.5E-17 125.9 30.7 239 398-654 7-258 (346)
219 PRK01742 tolB translocation pr 99.6 7.3E-14 1.6E-18 158.4 21.9 228 324-589 193-426 (429)
220 KOG1523 Actin-related protein 99.6 2.7E-13 5.8E-18 132.5 22.4 232 395-639 9-266 (361)
221 KOG2139 WD40 repeat protein [G 99.6 1.1E-12 2.3E-17 130.3 26.6 288 336-652 100-431 (445)
222 KOG0974 WD-repeat protein WDR6 99.6 2.4E-11 5.2E-16 137.7 40.8 195 336-565 89-290 (967)
223 KOG1310 WD40 repeat protein [G 99.6 2E-14 4.3E-19 149.6 15.0 245 326-616 42-311 (758)
224 PF04762 IKI3: IKI3 family; I 99.6 6.3E-09 1.4E-13 126.3 64.5 509 395-1060 74-639 (928)
225 KOG2139 WD40 repeat protein [G 99.6 2.6E-12 5.7E-17 127.6 26.6 260 733-1007 140-431 (445)
226 PRK03629 tolB translocation pr 99.6 1.9E-12 4.1E-17 146.4 29.3 238 357-632 179-427 (429)
227 KOG2041 WD40 repeat protein [G 99.5 3.4E-11 7.3E-16 129.6 35.6 549 336-914 16-618 (1189)
228 KOG1523 Actin-related protein 99.5 1E-12 2.2E-17 128.6 22.0 238 333-599 9-269 (361)
229 KOG2321 WD40 repeat protein [G 99.5 1.2E-12 2.6E-17 137.6 23.8 285 332-654 49-345 (703)
230 PRK05137 tolB translocation pr 99.5 3.2E-12 6.9E-17 145.8 29.6 237 357-632 182-432 (435)
231 KOG2315 Predicted translation 99.5 1.6E-11 3.4E-16 129.7 30.9 285 336-659 36-351 (566)
232 KOG2394 WD40 protein DMR-N9 [G 99.5 7.5E-13 1.6E-17 138.1 20.6 278 336-657 125-457 (636)
233 KOG2111 Uncharacterized conser 99.5 5.7E-12 1.2E-16 123.5 25.2 241 802-1063 6-259 (346)
234 COG5354 Uncharacterized protei 99.5 9.3E-12 2E-16 129.6 27.9 280 333-651 31-347 (561)
235 PF04762 IKI3: IKI3 family; I 99.5 8.2E-09 1.8E-13 125.3 57.6 578 333-1012 74-689 (928)
236 PRK03629 tolB translocation pr 99.5 1.7E-12 3.7E-17 146.7 24.7 229 324-588 188-427 (429)
237 COG4946 Uncharacterized protei 99.5 2.4E-09 5.2E-14 110.5 44.5 517 326-1008 70-655 (668)
238 KOG1272 WD40-repeat-containing 99.5 5.6E-14 1.2E-18 143.8 11.2 268 396-686 129-401 (545)
239 PRK04922 tolB translocation pr 99.5 3.1E-12 6.8E-17 145.5 26.2 238 357-632 184-432 (433)
240 PRK02889 tolB translocation pr 99.5 5E-12 1.1E-16 143.2 26.5 223 392-632 191-424 (427)
241 KOG1272 WD40-repeat-containing 99.5 1.4E-13 3.1E-18 140.8 12.3 273 335-648 130-405 (545)
242 PRK04922 tolB translocation pr 99.5 2.5E-12 5.4E-17 146.4 23.7 230 323-588 192-432 (433)
243 KOG3881 Uncharacterized conser 99.5 3.8E-12 8.3E-17 128.1 21.7 272 334-632 55-341 (412)
244 PRK02889 tolB translocation pr 99.5 3.5E-12 7.5E-17 144.5 24.1 231 324-589 185-425 (427)
245 PF10282 Lactonase: Lactonase, 99.5 5.9E-10 1.3E-14 122.6 40.8 209 803-1013 88-330 (345)
246 COG5354 Uncharacterized protei 99.5 2E-10 4.4E-15 119.8 32.3 366 512-999 15-421 (561)
247 KOG2659 LisH motif-containing 99.5 3.2E-13 7E-18 128.4 10.8 171 3-185 24-206 (228)
248 PRK05137 tolB translocation pr 99.4 1.4E-11 3E-16 140.5 24.8 230 323-588 190-432 (435)
249 COG2706 3-carboxymuconate cycl 99.4 8.3E-10 1.8E-14 111.5 33.2 281 706-1012 15-328 (346)
250 KOG2321 WD40 repeat protein [G 99.4 1.3E-11 2.9E-16 129.9 21.1 278 694-1016 60-352 (703)
251 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.5E-09 5.4E-14 113.5 37.2 205 805-1016 108-339 (352)
252 KOG1409 Uncharacterized conser 99.4 2.4E-11 5.2E-16 120.2 20.1 336 567-1008 16-395 (404)
253 KOG2314 Translation initiation 99.4 3.5E-10 7.7E-15 118.9 29.0 317 532-998 213-558 (698)
254 KOG2315 Predicted translation 99.4 4.4E-10 9.5E-15 119.0 29.4 336 529-916 34-391 (566)
255 PF08662 eIF2A: Eukaryotic tra 99.4 5E-11 1.1E-15 117.8 20.9 154 846-1015 9-186 (194)
256 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.1E-09 2.3E-14 116.3 32.1 269 357-660 27-338 (352)
257 KOG2314 Translation initiation 99.4 1.3E-10 2.9E-15 122.0 24.5 316 298-653 216-574 (698)
258 PF10282 Lactonase: Lactonase, 99.4 9E-09 1.9E-13 113.2 38.7 249 396-652 36-322 (345)
259 PRK01029 tolB translocation pr 99.3 5.4E-10 1.2E-14 125.8 29.3 227 392-633 180-425 (428)
260 PRK01029 tolB translocation pr 99.3 2.5E-10 5.4E-15 128.5 26.3 235 327-590 177-426 (428)
261 KOG3881 Uncharacterized conser 99.3 1.6E-10 3.5E-15 116.7 21.2 251 395-660 54-328 (412)
262 COG2706 3-carboxymuconate cycl 99.3 1.9E-08 4E-13 101.9 35.3 302 508-894 15-345 (346)
263 PRK00178 tolB translocation pr 99.3 2.6E-10 5.7E-15 130.5 25.5 228 326-588 190-427 (430)
264 PRK00178 tolB translocation pr 99.3 8.1E-10 1.8E-14 126.5 29.4 223 392-632 194-427 (430)
265 PRK04792 tolB translocation pr 99.3 7.5E-10 1.6E-14 125.8 28.3 223 392-632 213-446 (448)
266 PRK04792 tolB translocation pr 99.3 1.9E-10 4E-15 130.7 23.3 227 327-588 210-446 (448)
267 KOG1354 Serine/threonine prote 99.3 1.7E-10 3.6E-15 114.2 19.1 263 333-610 24-361 (433)
268 TIGR02800 propeller_TolB tol-p 99.3 1E-09 2.2E-14 125.9 28.7 210 392-617 185-405 (417)
269 KOG1354 Serine/threonine prote 99.3 1E-09 2.2E-14 108.8 23.9 358 440-962 24-432 (433)
270 TIGR02800 propeller_TolB tol-p 99.3 4.2E-10 9.1E-15 129.0 24.0 214 325-571 180-404 (417)
271 PF08662 eIF2A: Eukaryotic tra 99.3 4.1E-10 9E-15 111.3 20.3 163 399-570 8-185 (194)
272 KOG1409 Uncharacterized conser 99.3 6.8E-11 1.5E-15 117.0 13.6 358 476-874 15-395 (404)
273 KOG4547 WD40 repeat-containing 99.2 1.8E-09 4E-14 115.5 22.9 188 811-1008 3-221 (541)
274 KOG4547 WD40 repeat-containing 99.2 1.6E-09 3.5E-14 115.9 22.5 194 405-609 2-221 (541)
275 TIGR03300 assembly_YfgL outer 99.2 5.1E-08 1.1E-12 109.7 32.6 209 821-1058 154-377 (377)
276 TIGR03300 assembly_YfgL outer 99.1 4.2E-08 9.1E-13 110.4 31.0 183 457-654 67-261 (377)
277 KOG1897 Damage-specific DNA bi 99.0 0.00013 2.8E-09 83.9 52.7 622 332-1005 304-1002(1096)
278 PLN02919 haloacid dehalogenase 99.0 2E-07 4.4E-12 115.9 32.3 260 737-1011 571-892 (1057)
279 KOG4190 Uncharacterized conser 99.0 2E-09 4.3E-14 112.8 12.0 243 392-650 731-986 (1034)
280 KOG0280 Uncharacterized conser 99.0 2.8E-08 6E-13 96.9 18.2 250 336-609 71-334 (339)
281 PLN02919 haloacid dehalogenase 99.0 2.2E-07 4.9E-12 115.5 31.0 255 805-1063 571-891 (1057)
282 PRK04043 tolB translocation pr 99.0 9.9E-08 2.1E-12 106.6 25.1 206 327-566 181-403 (419)
283 KOG3617 WD40 and TPR repeat-co 99.0 2.4E-08 5.2E-13 110.2 18.9 507 336-969 17-590 (1416)
284 KOG4190 Uncharacterized conser 99.0 3.1E-09 6.8E-14 111.3 11.2 294 326-648 727-1032(1034)
285 KOG1897 Damage-specific DNA bi 98.9 0.00028 6E-09 81.3 51.5 581 403-1065 264-947 (1096)
286 KOG1064 RAVE (regulator of V-A 98.9 3.2E-09 6.9E-14 126.4 11.5 202 392-619 2204-2409(2439)
287 KOG0280 Uncharacterized conser 98.9 1.4E-07 3.1E-12 92.0 20.1 198 804-1009 124-335 (339)
288 PRK04043 tolB translocation pr 98.9 6.9E-07 1.5E-11 99.9 28.1 218 823-1070 170-408 (419)
289 KOG1064 RAVE (regulator of V-A 98.9 6.4E-09 1.4E-13 124.0 12.2 225 408-662 2180-2408(2439)
290 PF15492 Nbas_N: Neuroblastoma 98.9 6.4E-07 1.4E-11 88.2 23.8 207 806-1017 2-269 (282)
291 PRK11138 outer membrane biogen 98.8 5E-06 1.1E-10 93.9 32.2 211 821-1059 169-393 (394)
292 PF07433 DUF1513: Protein of u 98.8 2.2E-06 4.7E-11 87.7 25.7 185 806-1000 55-278 (305)
293 KOG3914 WD repeat protein WDR4 98.8 6.3E-08 1.4E-12 99.0 13.7 165 336-526 64-232 (390)
294 PF07433 DUF1513: Protein of u 98.8 4.5E-06 9.8E-11 85.4 26.4 233 338-603 8-280 (305)
295 PF15492 Nbas_N: Neuroblastoma 98.8 4.4E-06 9.6E-11 82.4 24.7 214 848-1068 3-269 (282)
296 KOG3617 WD40 and TPR repeat-co 98.8 5E-06 1.1E-10 92.5 26.9 343 398-819 17-373 (1416)
297 KOG0309 Conserved WD40 repeat- 98.7 1.1E-07 2.5E-12 103.7 13.7 247 336-609 69-340 (1081)
298 KOG3914 WD repeat protein WDR4 98.7 1.1E-07 2.4E-12 97.3 12.7 159 846-1016 66-232 (390)
299 KOG1832 HIV-1 Vpr-binding prot 98.7 1.1E-08 2.3E-13 113.5 5.0 215 392-639 1097-1318(1516)
300 COG5170 CDC55 Serine/threonine 98.7 3.6E-07 7.7E-12 89.6 14.5 76 799-874 170-253 (460)
301 KOG4532 WD40-like repeat conta 98.7 2.5E-06 5.5E-11 82.3 19.7 148 399-548 161-321 (344)
302 KOG4532 WD40-like repeat conta 98.7 3.2E-06 7E-11 81.6 20.0 189 817-1010 133-334 (344)
303 PRK11138 outer membrane biogen 98.7 1.9E-05 4E-10 89.2 29.6 193 457-657 71-279 (394)
304 PF08450 SGL: SMP-30/Gluconola 98.7 3.2E-05 6.9E-10 81.0 29.4 220 738-995 4-243 (246)
305 PF13360 PQQ_2: PQQ-like domai 98.7 6.1E-06 1.3E-10 86.3 23.9 224 821-1067 2-237 (238)
306 PF06433 Me-amine-dh_H: Methyl 98.6 3.5E-05 7.5E-10 79.9 27.3 285 555-883 17-330 (342)
307 PF06433 Me-amine-dh_H: Methyl 98.6 5E-05 1.1E-09 78.7 27.1 205 806-1016 99-329 (342)
308 KOG4714 Nucleoporin [Nuclear s 98.6 9.9E-07 2.1E-11 84.7 13.6 210 336-564 38-255 (319)
309 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00031 6.8E-09 68.0 30.1 137 500-647 24-160 (354)
310 KOG0882 Cyclophilin-related pe 98.6 3.5E-06 7.5E-11 87.4 18.3 291 332-649 7-369 (558)
311 KOG0309 Conserved WD40 repeat- 98.6 4.6E-07 9.9E-12 99.1 12.4 267 260-564 50-340 (1081)
312 PF08450 SGL: SMP-30/Gluconola 98.6 0.00011 2.3E-09 77.1 30.3 221 338-597 3-244 (246)
313 KOG0882 Cyclophilin-related pe 98.6 1.8E-06 3.9E-11 89.4 15.9 298 732-1057 8-369 (558)
314 PRK02888 nitrous-oxide reducta 98.5 1.2E-05 2.6E-10 90.1 23.0 105 808-916 283-405 (635)
315 COG5170 CDC55 Serine/threonine 98.5 1.7E-06 3.6E-11 85.1 14.3 251 395-652 25-367 (460)
316 PF13360 PQQ_2: PQQ-like domai 98.5 3.5E-05 7.7E-10 80.5 25.6 222 417-657 2-235 (238)
317 KOG0396 Uncharacterized conser 98.5 5.7E-07 1.2E-11 91.1 10.9 173 5-189 115-297 (389)
318 PRK02888 nitrous-oxide reducta 98.5 4.3E-05 9.3E-10 85.7 26.3 184 807-1008 198-405 (635)
319 KOG1920 IkappaB kinase complex 98.5 3.7E-05 7.9E-10 90.2 26.5 276 733-1059 68-364 (1265)
320 PF00930 DPPIV_N: Dipeptidyl p 98.5 5.6E-05 1.2E-09 83.6 27.0 267 343-642 1-347 (353)
321 PF00400 WD40: WD domain, G-be 98.5 4.1E-07 8.9E-12 63.3 5.8 39 875-913 1-39 (39)
322 PF10607 CLTH: CTLH/CRA C-term 98.5 4.9E-07 1.1E-11 85.4 8.2 133 38-183 5-141 (145)
323 KOG4714 Nucleoporin [Nuclear s 98.4 2.5E-06 5.3E-11 82.1 12.4 195 854-1058 100-316 (319)
324 KOG1920 IkappaB kinase complex 98.4 6.3E-05 1.4E-09 88.3 26.1 281 333-652 67-365 (1265)
325 KOG1645 RING-finger-containing 98.4 3E-05 6.6E-10 79.6 20.7 251 391-652 188-461 (463)
326 KOG1275 PAB-dependent poly(A) 98.4 4.9E-06 1.1E-10 93.8 15.6 180 812-1005 146-340 (1118)
327 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.0002 4.3E-09 79.2 28.0 304 538-903 1-345 (353)
328 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00083 1.8E-08 65.2 27.6 115 342-482 18-132 (354)
329 PF00400 WD40: WD domain, G-be 98.4 7.1E-07 1.5E-11 62.1 5.4 38 325-363 2-39 (39)
330 KOG2695 WD40 repeat protein [G 98.4 1.2E-06 2.5E-11 87.7 8.7 167 338-528 215-387 (425)
331 KOG3621 WD40 repeat-containing 98.3 0.00017 3.8E-09 79.9 23.5 138 335-493 34-178 (726)
332 PF14583 Pectate_lyase22: Olig 98.3 0.0019 4.1E-08 68.7 30.4 278 341-650 42-379 (386)
333 KOG1645 RING-finger-containing 98.2 9E-05 2E-09 76.2 17.8 250 327-608 186-461 (463)
334 KOG2695 WD40 repeat protein [G 98.2 3.9E-06 8.5E-11 84.0 7.8 135 333-483 251-386 (425)
335 KOG2114 Vacuolar assembly/sort 98.2 0.00024 5.3E-09 80.4 22.2 199 403-617 30-252 (933)
336 KOG2066 Vacuolar assembly/sort 98.2 5.5E-05 1.2E-09 84.8 16.9 188 843-1060 40-233 (846)
337 KOG2114 Vacuolar assembly/sort 98.1 0.0006 1.3E-08 77.4 23.0 202 341-572 30-252 (933)
338 KOG1275 PAB-dependent poly(A) 98.1 7.6E-05 1.6E-09 84.6 15.9 186 457-652 149-342 (1118)
339 cd00216 PQQ_DH Dehydrogenases 98.1 0.0052 1.1E-07 71.1 31.5 137 501-644 63-238 (488)
340 smart00668 CTLH C-terminal to 98.1 2.5E-06 5.4E-11 65.5 2.7 53 37-90 4-56 (58)
341 PRK13616 lipoprotein LpqB; Pro 98.0 0.0011 2.4E-08 77.2 24.8 212 843-1080 350-588 (591)
342 KOG2066 Vacuolar assembly/sort 98.0 0.00049 1.1E-08 77.5 20.7 186 735-964 41-233 (846)
343 PF08513 LisH: LisH; InterPro 98.0 9.2E-06 2E-10 49.7 3.8 27 6-32 1-27 (27)
344 cd00216 PQQ_DH Dehydrogenases 98.0 0.0051 1.1E-07 71.2 29.1 244 813-1071 111-435 (488)
345 COG0823 TolB Periplasmic compo 98.0 0.00064 1.4E-08 75.7 20.1 196 325-549 183-389 (425)
346 COG0823 TolB Periplasmic compo 97.9 0.00066 1.4E-08 75.5 19.5 175 823-1011 174-362 (425)
347 PF02897 Peptidase_S9_N: Proly 97.9 0.014 3.1E-07 66.6 30.9 251 336-613 125-409 (414)
348 PF11768 DUF3312: Protein of u 97.9 0.00071 1.5E-08 74.3 18.3 114 802-918 206-332 (545)
349 PF11768 DUF3312: Protein of u 97.9 0.008 1.7E-07 66.3 26.2 113 938-1063 208-332 (545)
350 smart00667 LisH Lissencephaly 97.9 1.9E-05 4.2E-10 52.7 4.1 32 4-35 2-33 (34)
351 PF08596 Lgl_C: Lethal giant l 97.9 0.0051 1.1E-07 67.8 25.1 282 735-1063 3-338 (395)
352 PF06977 SdiA-regulated: SdiA- 97.9 0.006 1.3E-07 62.2 23.6 197 328-547 15-239 (248)
353 PF08596 Lgl_C: Lethal giant l 97.9 0.0037 8E-08 68.9 23.7 255 336-597 3-325 (395)
354 PF14583 Pectate_lyase22: Olig 97.9 0.0059 1.3E-07 65.1 24.0 229 402-643 41-303 (386)
355 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.11 2.5E-06 60.3 35.9 61 822-884 441-501 (527)
356 COG3490 Uncharacterized protei 97.8 0.012 2.6E-07 58.5 23.1 256 580-913 69-346 (366)
357 PF04053 Coatomer_WDAD: Coatom 97.8 0.0035 7.7E-08 70.0 22.0 220 735-1009 34-264 (443)
358 PF04841 Vps16_N: Vps16, N-ter 97.7 0.02 4.2E-07 64.3 27.5 199 806-1016 33-255 (410)
359 COG3391 Uncharacterized conser 97.7 0.011 2.4E-07 65.8 25.3 207 803-1016 75-292 (381)
360 PF02897 Peptidase_S9_N: Proly 97.7 0.035 7.6E-07 63.4 30.1 248 397-656 124-408 (414)
361 PF04053 Coatomer_WDAD: Coatom 97.7 0.0057 1.2E-07 68.4 22.4 223 394-653 30-263 (443)
362 KOG3621 WD40 repeat-containing 97.7 0.0031 6.7E-08 70.4 19.2 119 625-764 36-155 (726)
363 PRK13616 lipoprotein LpqB; Pro 97.6 0.0035 7.5E-08 73.1 19.9 184 802-999 350-560 (591)
364 PF06977 SdiA-regulated: SdiA- 97.6 0.024 5.2E-07 57.9 23.2 201 800-1004 20-247 (248)
365 COG3391 Uncharacterized conser 97.6 0.2 4.2E-06 56.0 32.1 251 398-661 32-292 (381)
366 KOG1008 Uncharacterized conser 97.5 4.2E-05 9.1E-10 83.3 2.3 204 334-563 56-275 (783)
367 PF00780 CNH: CNH domain; Int 97.5 0.071 1.5E-06 56.9 27.0 231 406-662 5-265 (275)
368 PF04841 Vps16_N: Vps16, N-ter 97.5 0.085 1.9E-06 59.2 28.1 187 802-1005 81-285 (410)
369 COG3490 Uncharacterized protei 97.5 0.035 7.6E-07 55.3 21.0 231 806-1058 72-346 (366)
370 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.4 8.7E-06 55.9 36.2 197 457-658 71-339 (527)
371 COG3386 Gluconolactonase [Carb 97.4 0.048 1E-06 57.9 22.9 222 340-597 30-274 (307)
372 KOG2817 Predicted E3 ubiquitin 97.4 0.0011 2.4E-08 69.1 10.0 100 7-108 118-230 (394)
373 PF00780 CNH: CNH domain; Int 97.3 0.15 3.2E-06 54.4 26.4 229 345-619 6-266 (275)
374 COG3386 Gluconolactonase [Carb 97.2 0.099 2.1E-06 55.6 23.0 215 447-673 30-263 (307)
375 PF10647 Gmad1: Lipoprotein Lp 97.2 0.18 3.9E-06 52.5 24.5 206 844-1075 25-249 (253)
376 KOG1008 Uncharacterized conser 97.2 0.00012 2.6E-09 79.9 0.9 182 487-675 58-254 (783)
377 PF08553 VID27: VID27 cytoplas 97.1 0.025 5.4E-07 66.9 19.4 147 854-1007 492-647 (794)
378 PF03178 CPSF_A: CPSF A subuni 97.1 0.039 8.4E-07 60.4 19.6 214 780-1004 5-262 (321)
379 PRK10115 protease 2; Provision 97.0 0.73 1.6E-05 55.7 31.1 244 397-654 127-396 (686)
380 PF03178 CPSF_A: CPSF A subuni 97.0 0.21 4.6E-06 54.6 24.3 175 357-563 2-202 (321)
381 TIGR03074 PQQ_membr_DH membran 97.0 1.4 3.1E-05 53.2 40.4 205 457-661 196-486 (764)
382 KOG4640 Anaphase-promoting com 97.0 0.0031 6.7E-08 69.5 9.2 93 336-451 22-115 (665)
383 PRK10115 protease 2; Provision 96.9 1.5 3.2E-05 53.1 32.6 244 336-611 128-397 (686)
384 smart00320 WD40 WD40 repeats. 96.9 0.0021 4.5E-08 43.9 5.1 39 875-913 2-40 (40)
385 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.76 1.7E-05 50.8 26.7 84 530-619 308-409 (415)
386 KOG4640 Anaphase-promoting com 96.9 0.0046 1E-07 68.1 9.5 93 843-944 21-114 (665)
387 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.4 8.6E-06 52.9 24.3 83 800-882 306-407 (415)
388 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.079 1.7E-06 45.5 14.4 55 591-651 16-70 (111)
389 PF14870 PSII_BNR: Photosynthe 96.8 0.92 2E-05 48.0 27.2 157 840-1004 142-301 (302)
390 PF07995 GSDH: Glucose / Sorbo 96.8 1.1 2.5E-05 48.8 27.9 113 336-465 3-135 (331)
391 PF14727 PHTB1_N: PTHB1 N-term 96.7 0.42 9.2E-06 52.9 23.5 285 590-916 37-361 (418)
392 PF10647 Gmad1: Lipoprotein Lp 96.7 0.17 3.7E-06 52.6 19.6 147 802-953 24-183 (253)
393 KOG2395 Protein involved in va 96.7 0.035 7.7E-07 60.1 14.3 144 407-562 344-499 (644)
394 smart00320 WD40 WD40 repeats. 96.7 0.0029 6.3E-08 43.1 4.5 37 326-363 4-40 (40)
395 KOG2395 Protein involved in va 96.7 0.092 2E-06 57.1 17.2 145 857-1007 348-500 (644)
396 PHA02713 hypothetical protein; 96.7 0.12 2.6E-06 60.8 20.1 195 854-1072 303-543 (557)
397 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.092 2E-06 45.1 13.4 101 888-1003 2-110 (111)
398 PF05096 Glu_cyclase_2: Glutam 96.5 0.95 2E-05 46.1 22.3 186 802-996 45-249 (264)
399 PF08553 VID27: VID27 cytoplas 96.4 0.069 1.5E-06 63.3 15.8 145 454-607 493-646 (794)
400 PRK13684 Ycf48-like protein; P 96.3 2.3 5E-05 46.5 29.6 156 885-1059 172-330 (334)
401 COG3204 Uncharacterized protei 96.2 1.4 3E-05 44.9 21.1 200 731-956 83-304 (316)
402 KOG4441 Proteins containing BT 96.2 0.39 8.4E-06 56.4 20.2 235 811-1071 283-555 (571)
403 PF05694 SBP56: 56kDa selenium 96.1 1.2 2.7E-05 48.3 21.7 239 345-597 86-392 (461)
404 KOG4441 Proteins containing BT 96.1 0.47 1E-05 55.7 20.2 234 407-654 284-548 (571)
405 PF07995 GSDH: Glucose / Sorbo 96.0 3 6.5E-05 45.6 27.5 240 803-1055 3-330 (331)
406 KOG2079 Vacuolar assembly/sort 96.0 0.071 1.5E-06 63.0 13.0 100 407-510 98-198 (1206)
407 PHA02713 hypothetical protein; 96.0 0.27 5.9E-06 57.8 18.3 201 452-663 303-544 (557)
408 PF15390 DUF4613: Domain of un 95.9 0.13 2.9E-06 56.9 13.5 160 842-1009 19-188 (671)
409 PF05694 SBP56: 56kDa selenium 95.8 1.3 2.7E-05 48.3 20.2 254 498-753 86-393 (461)
410 PF14727 PHTB1_N: PTHB1 N-term 95.8 4 8.7E-05 45.4 30.9 279 745-1061 37-361 (418)
411 KOG2079 Vacuolar assembly/sort 95.8 0.059 1.3E-06 63.6 10.8 99 349-472 101-202 (1206)
412 KOG3630 Nuclear pore complex, 95.7 0.2 4.4E-06 59.6 14.6 248 801-1086 100-363 (1405)
413 KOG4499 Ca2+-binding protein R 95.6 2 4.3E-05 42.0 18.3 144 441-595 108-271 (310)
414 COG3204 Uncharacterized protei 95.6 1.5 3.3E-05 44.7 18.4 171 881-1061 81-264 (316)
415 PF14870 PSII_BNR: Photosynthe 95.6 3.9 8.5E-05 43.3 29.0 231 803-1057 63-301 (302)
416 PF12894 Apc4_WD40: Anaphase-p 95.5 0.056 1.2E-06 38.5 6.1 31 396-426 11-41 (47)
417 PF12894 Apc4_WD40: Anaphase-p 95.5 0.037 8.1E-07 39.4 5.0 33 335-369 12-44 (47)
418 TIGR03074 PQQ_membr_DH membran 95.2 5.2 0.00011 48.6 24.8 203 812-1015 194-485 (764)
419 PF15390 DUF4613: Domain of un 95.1 7.4 0.00016 43.9 24.4 122 334-473 56-186 (671)
420 KOG2444 WD40 repeat protein [G 94.9 0.072 1.6E-06 51.7 6.7 102 815-916 72-178 (238)
421 PF05096 Glu_cyclase_2: Glutam 94.9 5.3 0.00011 40.9 22.4 193 733-953 44-248 (264)
422 TIGR02604 Piru_Ver_Nterm putat 94.7 8.1 0.00018 43.0 23.6 139 802-952 14-200 (367)
423 KOG1898 Splicing factor 3b, su 94.7 14 0.0003 44.8 40.3 115 941-1068 939-1056(1205)
424 PF12234 Rav1p_C: RAVE protein 94.5 0.96 2.1E-05 52.5 15.5 123 837-963 24-155 (631)
425 PF12234 Rav1p_C: RAVE protein 94.4 1.1 2.4E-05 52.0 15.8 112 443-562 31-155 (631)
426 COG4590 ABC-type uncharacteriz 94.4 0.68 1.5E-05 49.5 12.7 158 800-967 219-389 (733)
427 KOG4499 Ca2+-binding protein R 94.3 5.9 0.00013 38.9 18.9 138 531-673 110-262 (310)
428 KOG1898 Splicing factor 3b, su 94.2 17 0.00037 44.0 32.2 105 807-915 939-1048(1205)
429 COG4257 Vgb Streptogramin lyas 94.0 7.4 0.00016 39.4 18.0 197 844-1069 63-269 (353)
430 PF10168 Nup88: Nuclear pore c 93.9 1.2 2.5E-05 53.5 15.3 91 977-1070 84-189 (717)
431 PLN00033 photosystem II stabil 93.9 5.5 0.00012 44.3 19.6 147 803-961 240-396 (398)
432 KOG1916 Nuclear protein, conta 93.7 0.14 2.9E-06 59.3 6.7 131 329-485 127-282 (1283)
433 KOG2444 WD40 repeat protein [G 93.7 0.19 4.2E-06 48.9 6.7 101 350-473 73-177 (238)
434 KOG2280 Vacuolar assembly/sort 93.6 5.4 0.00012 46.2 18.7 181 823-1016 65-255 (829)
435 PHA03098 kelch-like protein; P 93.5 3.5 7.5E-05 48.9 18.7 153 498-655 342-514 (534)
436 PHA03098 kelch-like protein; P 93.4 2.4 5.2E-05 50.2 17.2 188 811-1012 293-516 (534)
437 PF14761 HPS3_N: Hermansky-Pud 93.2 3.8 8.2E-05 40.2 14.6 157 889-1059 21-213 (215)
438 PF10214 Rrn6: RNA polymerase 92.9 31 0.00066 42.8 27.1 174 800-1009 78-278 (765)
439 TIGR02604 Piru_Ver_Nterm putat 92.8 2.8 6E-05 46.7 15.4 149 843-996 14-202 (367)
440 PRK13684 Ycf48-like protein; P 92.7 18 0.00038 39.6 31.5 153 801-962 172-329 (334)
441 PF10168 Nup88: Nuclear pore c 92.7 29 0.00064 41.9 24.7 94 800-916 83-180 (717)
442 PHA02790 Kelch-like protein; P 92.5 5.1 0.00011 46.4 17.6 184 812-1011 271-474 (480)
443 COG3823 Glutamine cyclotransfe 92.2 7.1 0.00015 37.7 14.4 100 812-916 55-159 (262)
444 PF03022 MRJP: Major royal jel 91.9 20 0.00042 38.2 20.6 188 804-995 3-253 (287)
445 KOG2377 Uncharacterized conser 91.5 6.1 0.00013 42.8 14.7 142 845-993 25-169 (657)
446 KOG1900 Nuclear pore complex, 91.3 16 0.00034 45.6 19.7 151 862-1012 96-278 (1311)
447 KOG1916 Nuclear protein, conta 91.3 0.25 5.5E-06 57.2 4.9 178 822-1007 153-374 (1283)
448 PF08728 CRT10: CRT10; InterP 91.2 6.2 0.00013 46.6 15.8 173 813-1006 49-245 (717)
449 KOG2280 Vacuolar assembly/sort 91.1 20 0.00043 41.9 19.1 163 398-572 85-255 (829)
450 PF14761 HPS3_N: Hermansky-Pud 91.1 13 0.00027 36.7 15.4 146 856-1007 29-214 (215)
451 KOG2247 WD40 repeat-containing 91.1 0.12 2.6E-06 55.7 2.0 241 738-1015 39-288 (615)
452 COG1520 FOG: WD40-like repeat 91.1 30 0.00064 38.7 22.1 197 413-619 73-279 (370)
453 TIGR03118 PEPCTERM_chp_1 conse 90.9 22 0.00048 36.9 22.3 207 803-1017 24-289 (336)
454 KOG4460 Nuclear pore complex, 90.8 3.9 8.6E-05 44.9 12.8 101 977-1079 103-217 (741)
455 KOG3630 Nuclear pore complex, 90.7 2.7 5.9E-05 50.7 12.4 147 443-595 102-260 (1405)
456 COG3292 Predicted periplasmic 90.7 34 0.00074 38.7 21.9 354 336-758 166-527 (671)
457 PF03022 MRJP: Major royal jel 90.6 26 0.00057 37.2 19.6 166 466-639 35-252 (287)
458 COG1520 FOG: WD40-like repeat 90.5 33 0.00071 38.3 21.6 200 809-1017 65-278 (370)
459 PHA02790 Kelch-like protein; P 90.4 11 0.00023 43.8 17.3 187 854-1067 271-475 (480)
460 PF11725 AvrE: Pathogenicity f 90.3 46 0.001 43.0 22.6 150 332-518 360-517 (1774)
461 KOG2377 Uncharacterized conser 90.0 1.9 4.2E-05 46.3 9.5 122 334-475 66-187 (657)
462 PF07676 PD40: WD40-like Beta 89.9 0.99 2.2E-05 30.8 5.1 32 331-362 5-38 (39)
463 KOG1900 Nuclear pore complex, 89.8 4.3 9.3E-05 50.2 13.4 172 318-518 63-273 (1311)
464 PF13449 Phytase-like: Esteras 89.3 17 0.00037 39.6 16.9 151 842-994 19-231 (326)
465 PF10433 MMS1_N: Mono-function 89.2 52 0.0011 38.6 37.6 80 813-895 418-503 (504)
466 PF10313 DUF2415: Uncharacteri 89.2 1.7 3.7E-05 30.1 5.5 32 843-874 1-34 (43)
467 TIGR03118 PEPCTERM_chp_1 conse 89.0 32 0.00069 35.9 23.8 214 443-662 24-289 (336)
468 PF10313 DUF2415: Uncharacteri 89.0 1.7 3.6E-05 30.1 5.4 32 397-428 1-35 (43)
469 PF12657 TFIIIC_delta: Transcr 88.9 2 4.4E-05 41.6 8.5 31 397-427 86-122 (173)
470 COG4257 Vgb Streptogramin lyas 88.6 31 0.00066 35.2 21.1 224 694-965 70-306 (353)
471 PF07569 Hira: TUP1-like enhan 88.3 2.2 4.7E-05 43.1 8.5 76 893-968 18-99 (219)
472 COG5167 VID27 Protein involved 88.1 16 0.00035 40.3 14.8 150 447-607 472-631 (776)
473 KOG3616 Selective LIM binding 87.9 11 0.00024 43.3 13.9 78 395-481 13-90 (1636)
474 COG5290 IkappaB kinase complex 87.0 42 0.00092 39.4 17.8 508 328-952 10-563 (1243)
475 PLN02153 epithiospecifier prot 87.0 53 0.0011 36.1 21.4 162 896-1070 85-292 (341)
476 PLN00033 photosystem II stabil 86.9 57 0.0012 36.4 32.5 150 888-1057 241-396 (398)
477 TIGR03606 non_repeat_PQQ dehyd 86.8 62 0.0013 36.7 29.6 66 330-408 25-90 (454)
478 PRK14131 N-acetylneuraminic ac 86.6 54 0.0012 36.7 19.3 39 602-642 314-352 (376)
479 PLN02193 nitrile-specifier pro 86.6 69 0.0015 37.1 21.2 162 896-1072 228-420 (470)
480 COG4590 ABC-type uncharacteriz 86.3 2.6 5.7E-05 45.3 7.8 172 833-1012 211-391 (733)
481 PF07250 Glyoxal_oxid_N: Glyox 86.1 13 0.00028 37.9 12.5 148 512-662 49-207 (243)
482 PF07569 Hira: TUP1-like enhan 85.8 5 0.00011 40.5 9.4 75 941-1016 16-104 (219)
483 PF05935 Arylsulfotrans: Aryls 85.8 51 0.0011 38.2 18.8 146 864-1019 127-313 (477)
484 PF13449 Phytase-like: Esteras 85.7 53 0.0012 35.8 18.1 160 732-902 18-231 (326)
485 TIGR03548 mutarot_permut cycli 85.4 60 0.0013 35.3 21.4 70 498-567 123-198 (323)
486 KOG1983 Tomosyn and related SN 85.1 16 0.00034 46.1 15.1 69 937-1011 200-268 (993)
487 PF08728 CRT10: CRT10; InterP 85.1 3.9 8.4E-05 48.1 9.2 135 336-472 102-245 (717)
488 PF14781 BBS2_N: Ciliary BBSom 84.9 30 0.00064 31.3 12.9 122 338-481 2-133 (136)
489 PRK13613 lipoprotein LpqB; Pro 83.6 1E+02 0.0023 36.5 21.8 203 844-1069 364-588 (599)
490 KOG1983 Tomosyn and related SN 83.4 24 0.00053 44.5 15.7 34 336-370 37-70 (993)
491 PF12657 TFIIIC_delta: Transcr 83.3 7.9 0.00017 37.5 9.3 31 886-916 86-122 (173)
492 TIGR03606 non_repeat_PQQ dehyd 83.3 26 0.00057 39.6 14.4 113 885-998 29-166 (454)
493 PF02333 Phytase: Phytase; In 82.4 83 0.0018 34.6 24.0 188 457-654 70-292 (381)
494 PF10395 Utp8: Utp8 family; I 81.7 1.2E+02 0.0026 35.9 24.3 243 808-1060 34-305 (670)
495 PF10433 MMS1_N: Mono-function 81.2 1.2E+02 0.0026 35.6 35.6 105 496-606 219-340 (504)
496 COG5167 VID27 Protein involved 81.2 32 0.00069 38.2 13.2 141 854-1007 478-632 (776)
497 PRK13615 lipoprotein LpqB; Pro 81.0 1.2E+02 0.0025 35.6 18.8 151 845-1007 336-502 (557)
498 TIGR03548 mutarot_permut cycli 80.7 80 0.0017 34.4 17.2 104 812-918 72-197 (323)
499 PRK13613 lipoprotein LpqB; Pro 80.5 1E+02 0.0022 36.6 18.5 190 803-1001 364-576 (599)
500 PF05935 Arylsulfotrans: Aryls 80.2 1.2E+02 0.0026 35.1 27.1 192 456-654 116-369 (477)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-72 Score=553.19 Aligned_cols=492 Identities=21% Similarity=0.314 Sum_probs=415.7
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhhhh
Q 001367 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1091)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1091)
+.|++|++.|+|+++||.+|+.+||.|||+.+. .+.|.+++++|+|+.++..+..+. +++.+.+.++.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 569999999999999999999999999999874 899999999999999999998773 3334446679999999999
Q ss_pred hhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCCChHHHHHHHHHHHHhhhcCcccccc
Q 001367 82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK 161 (1091)
Q Consensus 82 lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 161 (1091)
||++..|...+|+.+||+...++. +..+++++|+.-+..++-....+... .-.....|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999888886 57788999988766544322222111 112356899999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCCCCCcccCCCCCCCCCCCCCCCCCCceeecCCCCC
Q 001367 162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT 241 (1091)
Q Consensus 162 ~~~~~~p~~rL~~Ll~qa~~~q~~~~~~~~~~~~~~sl~~dh~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 241 (1091)
+|++||++||+||++||+++|+||| ..+..|||.||.|.+ .+ +|+++
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~q------ip~qt--------------- 216 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQ------IPSQT--------------- 216 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------cc------CCchh---------------
Confidence 9999999999999999999999999 566689999999988 44 34443
Q ss_pred CcccccccccCCCCCCccccccCCCCCCccccCccccccccCCCcccccCcccCCcCCCCCCcchhhhcccccCCcccCC
Q 001367 242 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321 (1091)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsP~~~~~~~~~~~~~~~~~~~ 321 (1091)
T Consensus 217 -------------------------------------------------------------------------------- 216 (519)
T KOG0293|consen 217 -------------------------------------------------------------------------------- 216 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE
Q 001367 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1091)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1091)
.++|..|+++||.+.||++|+ +||+++.|.+..||++.....+.- ..++.+|..+|..
T Consensus 217 -----~qil~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~y 274 (519)
T KOG0293|consen 217 -----WQILQDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSY 274 (519)
T ss_pred -----hhhHhhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEE
Confidence 356789999999999999998 579999999999999876554221 1238899999999
Q ss_pred EEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe
Q 001367 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1091)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1091)
+.||||.+||++|+.|..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|++|..||+. |..+..+
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecCC-cchhhcc
Confidence 9999999999999999999999999998765331 24668999999999999 79999999999999955 5556666
Q ss_pred cCCC-cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 482 EGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 482 ~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
++-. ..|.++++ +.||.++++.+.|..|++++.++...+.. .....+|++++.|.|++++++.-. +..+.+|
T Consensus 350 ~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~----~qei~LW 422 (519)
T KOG0293|consen 350 EGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQ----DQEIHLW 422 (519)
T ss_pred cccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcc----cCeeEEe
Confidence 6543 56888888 56889999999999999999887665543 335568999999999999988765 4559999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc-CCCEEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAV 639 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~ 639 (1091)
|++....++.+.||......|.++.-..+..++++||+|+.|+||+..+|+++..+.+|.. .|++|+|+| +..++|+
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFAS 500 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhc
Confidence 9999999999999996666677765566678999999999999999999999999998875 799999999 5678999
Q ss_pred EECCCeEEEEECC
Q 001367 640 IANENRIKILETP 652 (1091)
Q Consensus 640 ~~~dg~i~iwd~~ 652 (1091)
+++||+|+||...
T Consensus 501 asDDgtIRIWg~~ 513 (519)
T KOG0293|consen 501 ASDDGTIRIWGPS 513 (519)
T ss_pred cCCCCeEEEecCC
Confidence 9999999999765
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.2e-63 Score=472.94 Aligned_cols=492 Identities=18% Similarity=0.278 Sum_probs=403.5
Q ss_pred hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhh
Q 001367 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1091)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q 79 (1091)
-..+|||||+|||+|+.+++++++||+|+++++| ++.|-+.|.+|+||.++..+++| +++.+.+..||+|
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence 4569999999999999999999999999999997 89999999999999999999998 5555678899999
Q ss_pred hhhhhhcCCCHHHHHHHHHhh--ccccCCCCHHHHHHHHhhcccccccchhccccccCCChHHHHHHHHHHHHhhhcCcc
Q 001367 80 NFFEALDGHDIAKALNILKKD--LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPI 157 (1091)
Q Consensus 80 ~~lEll~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~ 157 (1091)
..|||+|.++...|..+||+. +.-+.+.+|++|-+|+.||..+.++..+.+. +..++.|+. .|.+.++.++-
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrRa---~IAQ~ls~EV~ 153 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRRA---VIAQALSGEVH 153 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHHH---HHHHHhcCceE
Confidence 999999999999999999983 3335667899999999999999999888732 245777774 44555554332
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCCCCCcccCCCCCCCCCCCCCCCCCCceeecC
Q 001367 158 LQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSS 237 (1091)
Q Consensus 158 ~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~~~~~~~~~~~~sl~~dh~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 237 (1091)
.+||+||+.||+||++||+++.+.|..+ ...||..-.-.+
T Consensus 154 --------VVppSRLlaLlGQaLKWQqHQGLLPPGt--~iDLFRGkAA~K------------------------------ 193 (508)
T KOG0275|consen 154 --------VVPPSRLLALLGQALKWQQHQGLLPPGT--TIDLFRGKAAMK------------------------------ 193 (508)
T ss_pred --------EcChHHHHHHHHHHhhhHhhcCCCCCCc--eeeeccchhhhh------------------------------
Confidence 3899999999999999999997766421 112222000000
Q ss_pred CCCCCcccccccccCCCCCCccccccCCCCCCccccCccccccccCCCcccccCcccCCcCCCCCCcchhhhcccccCCc
Q 001367 238 SMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGET 317 (1091)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsP~~~~~~~~~~~~~~~ 317 (1091)
...|..||.+..
T Consensus 194 ---------------------------------------------~~~Ee~~Pt~l~----------------------- 205 (508)
T KOG0275|consen 194 ---------------------------------------------DQEEERYPTQLA----------------------- 205 (508)
T ss_pred ---------------------------------------------hhHhhhchHHhh-----------------------
Confidence 001222443332
Q ss_pred ccCCCchheeeec-ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC
Q 001367 318 SFSDFPKTVAQTL-IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1091)
Q Consensus 318 ~~~~~p~~~~~~l-~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 396 (1091)
+.+ .|.+..+.|..|||||+ +|++|+.||.|.|||..+|+......++.- .-+.-+.
T Consensus 206 ----------r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAq-----------d~fMMmd 263 (508)
T KOG0275|consen 206 ----------RSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ-----------DNFMMMD 263 (508)
T ss_pred ----------hheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhh-----------cceeecc
Confidence 222 25556889999999999 679999999999999999998765433211 1145588
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
.+|.|+.||.|...||+|+.||.|+||.+.+|.+++..- +.|+..|+++.||.|+. .+++++.|.++++.-+.+|+
T Consensus 264 ~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK 339 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGK 339 (508)
T ss_pred cceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccch
Confidence 999999999999999999999999999999999998532 28999999999999999 69999999999999999999
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC--CcEEEEEEcCCC-CEEEEEecCCCC
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSANG-RRLFSCGTSKEG 553 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~d~-~~l~~~~~~~~~ 553 (1091)
+++.|+||..-|+...| .++|..+++++.||+|++|+..+.++..+++..+ .+|.++..-|.+ ..+++|..
T Consensus 340 ~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr---- 413 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR---- 413 (508)
T ss_pred hHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC----
Confidence 99999999999999999 5688999999999999999999999888776543 467787777744 56777754
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
.+++++.++. |+.++.+.......+...+++.+|.|.++++.++|+.++.|...+|++..++..+.. .+..++-+|.
T Consensus 414 sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPH 490 (508)
T KOG0275|consen 414 SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPH 490 (508)
T ss_pred CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcc
Confidence 5669998874 677888876554556777888999999999999999999999999999999998866 6789999999
Q ss_pred CCEEEEEECCCeEEEEE
Q 001367 634 GTLLAVIANENRIKILE 650 (1091)
Q Consensus 634 ~~~l~~~~~dg~i~iwd 650 (1091)
.+.+|+-+.||.+++|.
T Consensus 491 qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 491 QNLLASYSEDGLLKLWK 507 (508)
T ss_pred cchhhhhcccchhhhcC
Confidence 99999999999999995
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-59 Score=498.24 Aligned_cols=576 Identities=18% Similarity=0.249 Sum_probs=494.8
Q ss_pred EEEcCCCceEEEEEcCCCcEEEEEcCCCCce-eeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCC
Q 001367 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418 (1091)
Q Consensus 340 v~fspdg~~llasg~~dg~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 418 (1091)
++||++|+ +|++... ..|.+-|+.+++.. .. .-..-...+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 5676653 45899999999873 21 0223557899999999999999999999
Q ss_pred EEEEEEeeCCcccceeEEEec-cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccC
Q 001367 419 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1091)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1091)
.+++|++.+|+.++ .++. |++||.-++|+|.|. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 4555 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CceEEEEEecCCeEEEEecCCCCc-eeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccc
Q 001367 498 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576 (1091)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 576 (1091)
+...|++|..|+++++||++.... ...+..|.+.+++++|++|+..+++++. +..+.+||+.+.+..+.+...+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999996655 6788899999999999999999999987 6679999998877777776644
Q ss_pred cccceEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 577 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 577 ~~~~v~~v~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
.+.++.+-++ +.+++++|.+|.+++||.++++.......... ..+..+...+....++..+.|..+.+||.
T Consensus 235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEc
Confidence 6777777777 67999999999999999999988766654432 34666676676677788888999999999
Q ss_pred CCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCcc
Q 001367 652 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 731 (1091)
Q Consensus 652 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 731 (1091)
++.+....+-|..+.|..+.|- .|+.+.++.++..+.+|+|+.. ...|..+ .+
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~l--------------------G~e~~~laVATNs~~lr~y~~~---~~~c~ii----~G 363 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFL--------------------GPEESHLAVATNSPELRLYTLP---TSYCQII----PG 363 (775)
T ss_pred cccEEehhhcCCchhheeeeec--------------------CCccceEEEEeCCCceEEEecC---CCceEEE----eC
Confidence 9999999999999999999885 7888999999999999999765 3344432 46
Q ss_pred ccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC
Q 001367 732 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 811 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 811 (1091)
|...|.++....+|..|++++.|.++++|.++.+.. .....-...+|...|.+++++.
T Consensus 364 H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~----------------------~~~~~a~~~gH~~svgava~~~ 421 (775)
T KOG0319|consen 364 HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS----------------------KSLCVAQANGHTNSVGAVAGSK 421 (775)
T ss_pred chhheeeeeecccCcEEEEecCCceEEEEEecCCcc----------------------hhhhhhhhcccccccceeeecc
Confidence 999999999888888999999999999998733211 0000111236999999999987
Q ss_pred CC-CEEEEEe-CCeEEEEEccCceeE---------EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee
Q 001367 812 ND-AYLFSAS-GGVISLYIVMTFKTI---------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 880 (1091)
Q Consensus 812 dg-~~la~~~-dg~i~iwd~~~~~~~---------~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~ 880 (1091)
.+ .++++++ |+++++|++...+.. .+...|...|.+++++| +.+++|+|+.|++.+||+++.+....+
T Consensus 422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~v 500 (775)
T KOG0319|consen 422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGV 500 (775)
T ss_pred cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEE
Confidence 65 5777777 899999999762211 12346899999999999 889999999999999999999999999
Q ss_pred eccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEE
Q 001367 881 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA 959 (1091)
Q Consensus 881 l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~ 959 (1091)
+.||...|.++.|+|..+.|||+|.|++|+||.+++ ..++++++||.. .|..+.|-.+|+.|++ ++||-++
T Consensus 501 LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred eeCCccceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEE
Confidence 999999999999999999999999999999999999 558999999998 8999999999999998 7999999
Q ss_pred EEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC
Q 001367 960 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 960 vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
+|++++++|+.. +.+|+.+|++++-++++.+++||+.||.|.+|.=.+
T Consensus 573 lWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 573 LWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 999999999998 678999999999999999999999999999996444
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-56 Score=473.91 Aligned_cols=589 Identities=14% Similarity=0.184 Sum_probs=479.5
Q ss_pred ccc-CCcCCCCCCcchhhhcccccCCcccCCCchhe-e-eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCC
Q 001367 292 VSL-KNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV-A-QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ 368 (1091)
Q Consensus 292 ~~~-~~~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~-~-~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~ 368 (1091)
++| |.-..|+++++.+...+... -..++.-+... + ..-.+-.+.+++++.+||++ .|++++...-+++|++.+|+
T Consensus 18 piYtGG~~~~s~nG~~L~t~~~d~-Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk 95 (775)
T KOG0319|consen 18 PIYTGGPVAWSSNGQHLYTACGDR-VIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGK 95 (775)
T ss_pred ceecCCceeECCCCCEEEEecCce-EEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccch
Confidence 344 44578888888876665431 01111112222 1 12235567999999999998 67888999999999999998
Q ss_pred ceeeeceeEEeccccccceeeeeecC-CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEE
Q 001367 369 KLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447 (1091)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~ 447 (1091)
.++. ++. |+.+|.-++|+|.|..||+|+.|+.++|||+..+.+.. .|+||.+.|.++
T Consensus 96 ~irs-------------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl 153 (775)
T KOG0319|consen 96 LIRS-------------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSL 153 (775)
T ss_pred HhHh-------------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEE
Confidence 8865 444 99999999999999999999999999999999987655 789999999999
Q ss_pred EEcCCCCceEEEEeeCCCcEEEEeCCCCc-eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec
Q 001367 448 AFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1091)
Q Consensus 448 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1091)
.|.|+-...+|++|+.|+++++||+.++. ++..+..|...|+++++. +|+..+++++.|..+.+||+..-+....+.
T Consensus 154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~--~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp 231 (775)
T KOG0319|consen 154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFS--EDSLELLSVGRDKVIIVWDLVQYKKLKTLP 231 (775)
T ss_pred EeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeec--cCCceEEEeccCcEEEEeehhhhhhhheec
Confidence 99999887689999999999999999654 488899999999999995 467899999999999999996555444433
Q ss_pred CCCCcEEEEEEcCC-----CCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCe
Q 001367 527 APGLGCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d-----~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~ 601 (1091)
. ...+.++.+-++ +.++++.+. ++.+++||..+++++....... ...+..+...+....++....|..
T Consensus 232 ~-ye~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQn 304 (775)
T KOG0319|consen 232 L-YESLESVVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQN 304 (775)
T ss_pred h-hhheeeEEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccce
Confidence 2 234556666666 668888875 7789999999998876655442 233666666677778888889999
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCCceEEE-ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccccc
Q 001367 602 IKIWDMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1091)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1091)
+.++|.++.++...+.+... .|..++| .|+.++++++++.+.+++|+..+..+. .+.+|.+.|.+++.
T Consensus 305 l~l~d~~~l~i~k~ivG~nd--EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~-------- 373 (775)
T KOG0319|consen 305 LFLYDEDELTIVKQIVGYND--EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDV-------- 373 (775)
T ss_pred EEEEEccccEEehhhcCCch--hheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeee--------
Confidence 99999999999888876543 6888886 467899999999999999999888766 78999999998874
Q ss_pred ccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCC-eEEEeecCceEEE
Q 001367 681 AGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLM 759 (1091)
Q Consensus 681 ~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~dg~i~v 759 (1091)
...|-++++++.|.++++|.++.+... ........+|.+.|.+++++..+. .+++++.|+++++
T Consensus 374 -------------~~~g~llat~sKD~svilWr~~~~~~~--~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 374 -------------WSSGDLLATGSKDKSVILWRLNNNCSK--SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred -------------cccCcEEEEecCCceEEEEEecCCcch--hhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 455678999999999999988422111 111122357999999999987764 6788889999999
Q ss_pred eecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEe
Q 001367 760 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI 838 (1091)
Q Consensus 760 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~ 838 (1091)
|+++..+.... +. ..........|...|++++++|+.+++|+|+ |.+.+||+++.+....++
T Consensus 439 W~l~~s~~~~~--------~~---------~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL 501 (775)
T KOG0319|consen 439 WDLPKSKETAF--------PI---------VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL 501 (775)
T ss_pred ecCCCcccccc--------cc---------eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe
Confidence 99987322100 00 1111223345999999999999999999999 899999999999999999
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 001367 839 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 918 (1091)
Q Consensus 839 ~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~ 918 (1091)
.+|...|.++.|+| ..+.+|+++.|++|+||.+.+..++.++.||...|..+.|-.+|+.|+|++.||.|++|++++++
T Consensus 502 sGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred eCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 99999999999999 88999999999999999999999999999999999999999999999999999999999999955
Q ss_pred eeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCC
Q 001367 919 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 965 (1091)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~ 965 (1091)
|...++.|.. .|++++.+|.+.++++ +.|+.|.+|.=.+
T Consensus 581 -----C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 581 -----CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred -----hhhhhhhccc---eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 7888999987 9999999999999998 6899999996444
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-52 Score=424.29 Aligned_cols=575 Identities=15% Similarity=0.194 Sum_probs=463.6
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 417 (1091)
.-+.-.|.|..+|.+.+ ..|.+-++........ +.+|..+++-..|||.|-|+|+|...
T Consensus 22 ~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~s 80 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVS 80 (603)
T ss_pred eEeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCc
Confidence 34555788888888765 6788888887765543 77899999999999999999999999
Q ss_pred CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee--CCCcEEEEeCCCCceeEEecCCCcceEEEeecc
Q 001367 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1091)
|+|+|||....+.+. ..+++.-.++|.+++|+.|+++ ++..+ .++-.+++-.++|.-+..+.||...|+++.|-|
T Consensus 81 G~vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kp 157 (603)
T KOG0318|consen 81 GKVRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKP 157 (603)
T ss_pred CcEEEEeccCcceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccC
Confidence 999999998754332 2357778899999999999995 44443 344455555568888999999999999999977
Q ss_pred cCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc
Q 001367 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1091)
+.. -.++++++|+.|.+|+=...+-...+..|..-|.++.|+|||.++++.+. ++.+++||-.+|+.+..+....
T Consensus 158 sRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~ 232 (603)
T KOG0318|consen 158 SRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSD 232 (603)
T ss_pred CCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCC
Confidence 643 57999999999999976666666677888889999999999999999987 6679999999999999999666
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCC-CceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE-NPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 576 ~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
.|.+.|.+++|+||+..+++++.|.+++|||+.+.+++.++........ -..+.|- +..|++.+.+|.|.+++....
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 6679999999999999999999999999999999999999987654211 1233444 668999999999999999999
Q ss_pred CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccc
Q 001367 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 734 (1091)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 734 (1091)
.....+.+|...|++++. +++++++++++.||.|.-|+...+.... +....|..
T Consensus 311 ~~~~~i~GHnK~ITaLtv---------------------~~d~~~i~SgsyDG~I~~W~~~~g~~~~-----~~g~~h~n 364 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTV---------------------SPDGKTIYSGSYDGHINSWDSGSGTSDR-----LAGKGHTN 364 (603)
T ss_pred ChhheecccccceeEEEE---------------------cCCCCEEEeeccCceEEEEecCCccccc-----cccccccc
Confidence 999999999999999998 8889999999999999999987544332 23345899
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.|.+++.+..+. +++++.|.++++.++..+...... . .+ ......+++..+|+.
T Consensus 365 qI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d~~ 418 (603)
T KOG0318|consen 365 QIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSDGG 418 (603)
T ss_pred eEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCCCC
Confidence 999999988777 888899999998876543221000 0 01 123344899999998
Q ss_pred EEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCccee--eeeccccCCeEEEE
Q 001367 815 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHSKRVTGLV 892 (1091)
Q Consensus 815 ~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~--~~l~~h~~~V~~l~ 892 (1091)
.++.+.++.|.+..-.++ ..+.. ..-...++|++| ++..+|+|+.||.|+||.+..+... ..+..|.++|++++
T Consensus 419 ~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 419 TAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred EEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence 888888777666652222 22222 344678999999 9999999999999999999876533 45667999999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeee
Q 001367 893 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ 971 (1091)
Q Consensus 893 ~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~ 971 (1091)
+|||+.+||++...+.+.+||+.+.+... ....-|.. .|.+++|||+.+++|+ +-|..|.||+++.......
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~----~~w~FHta---kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ 567 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVKT----NRWAFHTA---KINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII 567 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCceec----ceeeeeee---eEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence 99999999999999999999999966421 11112333 7999999999999999 5789999999998776666
Q ss_pred eecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 972 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 972 ~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
....|...|+.+.|-.+. .|++.+.|..|++|++.
T Consensus 568 iknAH~~gVn~v~wlde~-tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 568 IKNAHLGGVNSVAWLDES-TVVSSGQDANIKVWNVT 602 (603)
T ss_pred eccccccCceeEEEecCc-eEEeccCcceeEEeccc
Confidence 678898889999998655 68888999999999874
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-49 Score=423.38 Aligned_cols=590 Identities=16% Similarity=0.205 Sum_probs=451.8
Q ss_pred CcccCC-cCCCCCCcchhhhcccccCCcccCCCchheeeecc-cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCC
Q 001367 291 GVSLKN-IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ 368 (1091)
Q Consensus 291 ~~~~~~-~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~ 368 (1091)
+..|+. -++|+|++..+-..- -+...+-++.+....||. .+...|++++.||+|. +|++....|...+-++....
T Consensus 12 GTvyr~Gnl~ft~dG~sviSPv--GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~ 88 (893)
T KOG0291|consen 12 GTVYRAGNLVFTKDGNSVISPV--GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRS 88 (893)
T ss_pred cceeecCcEEECCCCCEEEecc--CCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccce
Confidence 444533 466777643222111 111233344444444553 5566999999999997 56666788999999988877
Q ss_pred ceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcc-----cceeEEEeccccC
Q 001367 369 KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGN 443 (1091)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~ 443 (1091)
.++.++ -+.+|.|+.|||||+++|+|.. +.+.||....... .....+..+|...
T Consensus 89 Vlh~f~--------------------fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fdd 147 (893)
T KOG0291|consen 89 VLHRFN--------------------FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDD 147 (893)
T ss_pred eeEEEe--------------------ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccc
Confidence 776533 3479999999999999999864 4699998865432 2234456789999
Q ss_pred eeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce--eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC---
Q 001367 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS--- 518 (1091)
Q Consensus 444 v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--- 518 (1091)
|.++.|+.|.+ +|++|+.|.++++|+++..+- .+.+.+|...|.+..| ..+...+++.+.||.+.+|....
T Consensus 148 i~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 148 ITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPP 223 (893)
T ss_pred eeEEEeccCCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEe--ccCcceEEEEecCceEEEEEecCCCc
Confidence 99999999999 899999999999999887665 5778999999998877 44567899999999999997761
Q ss_pred --------------------CCc-----------eeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee
Q 001367 519 --------------------LGA-----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1091)
Q Consensus 519 --------------------~~~-----------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1091)
++. ..-+......+++.+|++..+.|+++.. .+...+|.+....+
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~l 299 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNL 299 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec----CCeeEEEecCCceE
Confidence 111 0012223357899999999999999886 44588999999999
Q ss_pred eEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeE
Q 001367 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1091)
Q Consensus 568 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1091)
++.+.-.. ..|..++|+..|.+++.|+ .-|.+.||+..+..-+...++|. ..+.+++++|||+++|+|++||.|
T Consensus 300 ih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 300 IHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKV 374 (893)
T ss_pred EEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcE
Confidence 99988766 7899999999999999976 45899999999887777666554 479999999999999999999999
Q ss_pred EEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceee
Q 001367 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 726 (1091)
Q Consensus 647 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 726 (1091)
+|||..++-++.++..
T Consensus 375 KvWn~~SgfC~vTFte---------------------------------------------------------------- 390 (893)
T KOG0291|consen 375 KVWNTQSGFCFVTFTE---------------------------------------------------------------- 390 (893)
T ss_pred EEEeccCceEEEEecc----------------------------------------------------------------
Confidence 9999998877766554
Q ss_pred cCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeE
Q 001367 727 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 806 (1091)
Q Consensus 727 ~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 806 (1091)
|...|+.+.|+..|+.+++.+-||+++.||+... .+..++..+ ......|
T Consensus 391 -----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY----------------------rNfRTft~P---~p~Qfsc 440 (893)
T KOG0291|consen 391 -----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY----------------------RNFRTFTSP---EPIQFSC 440 (893)
T ss_pred -----CCCceEEEEEEecCCEEEEeecCCeEEeeeeccc----------------------ceeeeecCC---CceeeeE
Confidence 5556677777788888888888888888886542 223333322 3456689
Q ss_pred EEecCCCCEEEEEe-C-CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc-eeeeecc
Q 001367 807 FALSKNDAYLFSAS-G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG 883 (1091)
Q Consensus 807 l~~s~dg~~la~~~-d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~-~~~~l~~ 883 (1091)
++..|.|..+..|+ | =.|.+|++++|+.+..+.+|.++|.+++|+| .+..||+|+.|.+|++||+-... .+.+++
T Consensus 441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~- 518 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE- 518 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-
Confidence 99999999999888 4 3599999999999999999999999999999 89999999999999999987543 445555
Q ss_pred ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee----eeee-------c-cCCCcCCCCCceEEEEcCCCCEEE
Q 001367 884 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC----RSLQ-------T-PDGVMTLAPSETHIQFHKDQTRFL 951 (1091)
Q Consensus 884 h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~----~~~~-------~-~~~~~~~~~~i~~l~fs~dg~~la 951 (1091)
+...+.+++|+|||+.||+++-||.|.+||++.+..... .-+. . ...+.......+.+++|+||.+|+
T Consensus 519 i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~Il 598 (893)
T KOG0291|consen 519 IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCIL 598 (893)
T ss_pred eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEE
Confidence 677899999999999999999999999999986543210 0000 0 000111114689999999999999
Q ss_pred E-EecCeEEEEEcCCcceeeeeecC----------------------------------------------------C--
Q 001367 952 L-VHETHLAIYEAEELTCLKQWFPI----------------------------------------------------S-- 976 (1091)
Q Consensus 952 ~-~~d~~i~vwd~~~~~~~~~~~~~----------------------------------------------------h-- 976 (1091)
+ |..+.|++||+.++..++.+... +
T Consensus 599 AgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~r 678 (893)
T KOG0291|consen 599 AGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFR 678 (893)
T ss_pred ecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccC
Confidence 8 67789999999987665542111 0
Q ss_pred -ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEE
Q 001367 977 -SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1014 (1091)
Q Consensus 977 -~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~ 1014 (1091)
.-.|.++.|||.|+.+|.++..| +.||.+.+.-....
T Consensus 679 peIrv~sv~fsPtgraFAaatTEG-l~IYsld~~~~FDP 716 (893)
T KOG0291|consen 679 PEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDTTILFDP 716 (893)
T ss_pred ceEEEEEEEECCCcCeeeeecccc-eEEEecCCceEEcc
Confidence 22578899999999999999887 88999887655433
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-49 Score=420.25 Aligned_cols=579 Identities=15% Similarity=0.218 Sum_probs=462.4
Q ss_pred EEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
.+.|++||..+++-..+ .|.++|+...+.... .-.+...|.+++.||+|. ++++....|...+-++.....++.
T Consensus 19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~Tl---~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYTL---PLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred cEEECCCCCEEEeccCC-EEEEEEccCCcceeE---EeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence 47899999999987544 599999988654321 225777899999999999 899999999999999888888887
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc--------eeeecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
+. ...+|.++.|+| ||.+++.+ ..+.+.||....... ...+.++-..+.++.|+.|.+++++++.
T Consensus 93 f~-fk~~v~~i~fSP--ng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr--- 165 (893)
T KOG0291|consen 93 FN-FKRGVGAIKFSP--NGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR--- 165 (893)
T ss_pred Ee-ecCccceEEECC--CCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence 75 667899999955 66555554 567899997643322 2356677789999999999999999876
Q ss_pred CceEEEEEecCCcee--eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC---------------------
Q 001367 553 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--------------------- 609 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~--------------------- 609 (1091)
|..+++|++...+- ...+.+|. ..|..+.|..+...+++.+.||.+.+|....
T Consensus 166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 67799999887665 55566776 8999999999999999999999999997761
Q ss_pred --Cee---------EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccc
Q 001367 610 --VQL---------LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1091)
Q Consensus 610 --~~~---------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1091)
++. ....-.......+.+.+|++..+.|+++-..|.+.+|++..-..+..+.....+|..++++..|..
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDW 321 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDW 321 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCE
Confidence 110 011111112246889999999999999999999999999999999999998899999999655554
Q ss_pred ccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEE
Q 001367 679 TGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 758 (1091)
Q Consensus 679 ~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~ 758 (1091)
+++|+. .-|.+-+|+.. ...+.+..++|...+.+++++|||+++++++.||.|+
T Consensus 322 iA~g~~--------------------klgQLlVweWq------sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 322 IAFGCS--------------------KLGQLLVWEWQ------SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred EEEcCC--------------------ccceEEEEEee------ccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 444332 22678889865 3455667778999999999999999999999999999
Q ss_pred EeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEE
Q 001367 759 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 837 (1091)
Q Consensus 759 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~ 837 (1091)
||| ..+|.|+.++.- |...|+.+.|+..|+.+++.+ ||+|+.||+...+..++
T Consensus 376 vWn----------------------~~SgfC~vTFte----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 376 VWN----------------------TQSGFCFVTFTE----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred EEe----------------------ccCceEEEEecc----CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeee
Confidence 887 466777877653 999999999999999999999 99999999999999999
Q ss_pred ecCCCC-CeEEEEEcCCCCcEEEEEeCCC-eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 838 IMPPSP-TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 838 ~~~~~~-~i~~l~~s~~~~~~la~g~~dg-~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
+..+.. ...|++..| .|.++..|+.|. .|++|++++|+.+..+.||.++|.+++|+|+|..|||+|.|.+|++||+-
T Consensus 430 ft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 430 FTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred ecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 987654 568899999 888999999887 89999999999999999999999999999999999999999999999997
Q ss_pred CCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeee------cC-------------
Q 001367 916 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWF------PI------------- 975 (1091)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~------~~------------- 975 (1091)
..... ...++.. . .+..++|+|||+.||+ .-||+|.+||...+.....+- .+
T Consensus 509 ~s~~~-vEtl~i~---s----dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 509 SSSGT-VETLEIR---S----DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred ccCce-eeeEeec---c----ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 64211 1222222 1 4889999999999999 689999999998766553211 11
Q ss_pred CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccc-----------------------------------
Q 001367 976 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY----------------------------------- 1020 (1091)
Q Consensus 976 h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~----------------------------------- 1020 (1091)
.....+.+++|+||.++++|+....|.+|+++++.+++++.....
T Consensus 581 ~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i 660 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRI 660 (893)
T ss_pred cCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccc
Confidence 146789999999999999999999999999999998887763221
Q ss_pred ---cCCCC----c----ccccceeEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 1021 ---LRPTT----S----CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1021 ---~~~~~----~----~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
+|... . .-.|....+.|+|. |+.++++++.|- .+|.+
T Consensus 661 ~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt-graFAaatTEGl-~IYsl 708 (893)
T KOG0291|consen 661 DIALPGVQRGDLSSRRFRPEIRVTSVQFSPT-GRAFAAATTEGL-LIYSL 708 (893)
T ss_pred cccCCccccCCccccccCceEEEEEEEECCC-cCeeeeecccce-EEEec
Confidence 11100 0 11466678999995 888999988884 34443
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-49 Score=404.33 Aligned_cols=541 Identities=12% Similarity=0.199 Sum_probs=433.5
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
...+.+|...++-..|||.|- ++|+|...|+|+|||....+.+....|+ .-.++|..++|++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDF 113 (603)
T ss_pred eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCC
Confidence 456789999999999999996 7899999999999999876655543332 3457999999999
Q ss_pred CCCEEEEEECC--CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 407 DGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 407 dg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
|+++|++.++. +..+++-+++|..+. ++.||...|+++.|-|.-.. .++||++|++|.+|+-.--+...+++.|
T Consensus 114 ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~H 189 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREH 189 (603)
T ss_pred CCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccc
Confidence 99999887643 233444444554444 68899999999999987665 8999999999999986666667788899
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec---CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 561 (1091)
...|+++.|+ |||.++++++.||.+.+||=.+++....+. .|.+.|.+++|+||++.+++++. +.++++||
T Consensus 190 skFV~~VRys--PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWd 263 (603)
T KOG0318|consen 190 SKFVNCVRYS--PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWD 263 (603)
T ss_pred ccceeeEEEC--CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEE
Confidence 9999999995 578999999999999999999999888887 78899999999999999999987 56699999
Q ss_pred cCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
+.+.++++++.....-......+.|. +..|++.+.+|+|.+++...+..+..+.+|.. .|++++.++++++|++|+
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGS 339 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEeec
Confidence 99999999987654222333344454 67899999999999999999998888887755 799999999999999999
Q ss_pred CCCeEEEEECCCCCeeccc-ccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCc
Q 001367 642 NENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPS 720 (1091)
Q Consensus 642 ~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~ 720 (1091)
.||.|.-|+..++..-+.. .+|...|.+++.. +...+++.+.|.++++.++....-.
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~----------------------~~~~~~t~g~Dd~l~~~~~~~~~~t 397 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS----------------------ESGELFTIGWDDTLRVISLKDNGYT 397 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeec----------------------CCCcEEEEecCCeEEEEecccCccc
Confidence 9999999999988766554 6788888887753 2355778888999998876533322
Q ss_pred ccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCC
Q 001367 721 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 800 (1091)
Q Consensus 721 ~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1091)
....+.+. .....++..+++..++....++.+.+-+... +... .-
T Consensus 398 ~~~~~~lg-----~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~-----~~ 442 (603)
T KOG0318|consen 398 KSEVVKLG-----SQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSI-----PI 442 (603)
T ss_pred ccceeecC-----CCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceee-----cc
Confidence 22222222 2334888888887666666665555433211 1111 13
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeE--EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce
Q 001367 801 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 877 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~ 877 (1091)
.....++|++|+++.+|+|+ |+.|+||.+..+... ..+..|.++|++++||| |+.+||+|...+.+.+||+.+.+.
T Consensus 443 ~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 443 GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred ccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCce
Confidence 45678999999999999998 799999999876543 34556999999999999 999999999999999999999876
Q ss_pred ee-eeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecC
Q 001367 878 IS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 956 (1091)
Q Consensus 878 ~~-~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~ 956 (1091)
.. .+.-|+.+|.+++|||+.+++||||-|-.|.||+++... ..+.....|.. .|..+.|-.+...+-+|.|-
T Consensus 522 ~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~----~~i~iknAH~~---gVn~v~wlde~tvvSsG~Da 594 (603)
T KOG0318|consen 522 KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA----KHIIIKNAHLG---GVNSVAWLDESTVVSSGQDA 594 (603)
T ss_pred ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh----hheEecccccc---CceeEEEecCceEEeccCcc
Confidence 43 344599999999999999999999999999999998743 22555556665 69999999888887789999
Q ss_pred eEEEEEcC
Q 001367 957 HLAIYEAE 964 (1091)
Q Consensus 957 ~i~vwd~~ 964 (1091)
.|++|.+.
T Consensus 595 ~iK~W~v~ 602 (603)
T KOG0318|consen 595 NIKVWNVT 602 (603)
T ss_pred eeEEeccc
Confidence 99999864
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.8e-49 Score=416.08 Aligned_cols=569 Identities=16% Similarity=0.196 Sum_probs=446.2
Q ss_pred cCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEE
Q 001367 343 HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 422 (1091)
Q Consensus 343 spdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~i 422 (1091)
+..|+++.+ +.-..|.+||+.+|+...... .......|+|+.-+||.-.||+|..||.|+|
T Consensus 31 ~~~Gr~va~--~a~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVGYaDGsVqi 91 (888)
T KOG0306|consen 31 SGKGRAVAV--SALEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVGYADGSVQI 91 (888)
T ss_pred cCCCcEEEE--eccccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEEecCceEEe
Confidence 456885433 334789999999996554211 2234468999999999999999999999999
Q ss_pred EEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEE
Q 001367 423 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 502 (1091)
Q Consensus 423 wd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 502 (1091)
|+..++... .++.||...|+.+.|...|. .|++||.|+.|.+||+-...-+..+.||...|+..-|. .+..++
T Consensus 92 f~~~s~~~~---~tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~--~~~~~l 164 (888)
T KOG0306|consen 92 FSLESEEIL---ITFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL--NGDSFL 164 (888)
T ss_pred eccCCCcee---eeecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc--CCCeEE
Confidence 999987433 37889999999999999999 89999999999999999888899999999999988874 345799
Q ss_pred EEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc------------eeeEE
Q 001367 503 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG------------AIKRT 570 (1091)
Q Consensus 503 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~------------~~~~~ 570 (1091)
++.+.|+.|++||+++..+..+...|...+.++++.+ +.+++++. ++.+.+|++... +....
T Consensus 165 vS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~ 238 (888)
T KOG0306|consen 165 VSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGT 238 (888)
T ss_pred EEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeeccce
Confidence 9999999999999999999999999999999999988 66777665 445999988211 01111
Q ss_pred EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEE-------------EE--eC-----------------
Q 001367 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT-------------TI--DA----------------- 618 (1091)
Q Consensus 571 ~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~-------------~~--~~----------------- 618 (1091)
+... ..+....+...++++++++-+.|..+.++.+.+.+.+. .. ..
T Consensus 239 ~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ 316 (888)
T KOG0306|consen 239 FIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLET 316 (888)
T ss_pred eeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHh
Confidence 2211 13445556677888899999999999999876532110 00 00
Q ss_pred CCCCCCCceEEEccCCC--EEEEEECCCeEEEEECCCCCee---------cccccccccceeeeeccccccccccccCCc
Q 001367 619 GGGLPENPRICFNKNGT--LLAVIANENRIKILETPESNSV---------DAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1091)
Q Consensus 619 ~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~ 687 (1091)
-.....+.++.+-|.++ ..++.-.++++.+|.++..... ..+.+|...|.++++
T Consensus 317 ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v--------------- 381 (888)
T KOG0306|consen 317 IRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV--------------- 381 (888)
T ss_pred eechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe---------------
Confidence 00012345666666442 2223366788888888763222 345688888998888
Q ss_pred ccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccc
Q 001367 688 VSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 767 (1091)
Q Consensus 688 ~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~ 767 (1091)
+.+...+++++. +++++|+..+. +|.... ..+.+.+..|.|.+++++.|..+|.+.+||+.....
T Consensus 382 ------S~d~~~~~Sga~-~SikiWn~~t~---kciRTi-----~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 382 ------SSDSILLASGAG-ESIKIWNRDTL---KCIRTI-----TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred ------ecCceeeeecCC-CcEEEEEccCc---ceeEEe-----ccccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 555566666655 89999998733 222221 345788999999999999999999999999765422
Q ss_pred ccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccC-----ceeE------
Q 001367 768 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT-----FKTI------ 835 (1091)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~-----~~~~------ 835 (1091)
+-+. ..|.+.+..++.+||++.+++++ |.+|++||..- |...
T Consensus 447 ----------------------~Eti----~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 447 ----------------------VETI----RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred ----------------------hhhh----hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence 1111 14999999999999999999998 89999999752 2111
Q ss_pred --EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 836 --LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 836 --~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
+++ .-...|.|+.+|| |+++||++--|.+|+||-+++-+..-.+.||.-||.|+..|||+++++|||.|+.|++|-
T Consensus 501 ~~rtL-el~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 501 HTRTL-ELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred cceEE-eccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 122 2456899999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEE
Q 001367 914 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 992 (1091)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l 992 (1091)
++-|. |.+.+-+|.. .|.++.|-|+...+.+ |.|+.|+-||....++++. +.+|...|++++.+|+|.++
T Consensus 579 LdFGD-----CHKS~fAHdD---Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~-L~~H~~ev~cLav~~~G~~v 649 (888)
T KOG0306|consen 579 LDFGD-----CHKSFFAHDD---SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK-LDGHHSEVWCLAVSPNGSFV 649 (888)
T ss_pred cccch-----hhhhhhcccC---ceeEEEEcccceeEEEecCcceEEeechhhhhhhee-eccchheeeeeEEcCCCCeE
Confidence 99866 5666777776 8999999998887777 7999999999999999988 67899999999999999999
Q ss_pred EEEEcCCcEEEEeCCCCceE
Q 001367 993 FTSFVDGTLSIHEASNLEVQ 1012 (1091)
Q Consensus 993 ~t~~~dg~v~iwd~~~~~~~ 1012 (1091)
++++.|.+|++|.......+
T Consensus 650 vs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 650 VSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred EeccCCceeEeeeccCccee
Confidence 99999999999997764443
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-48 Score=413.71 Aligned_cols=503 Identities=15% Similarity=0.232 Sum_probs=398.8
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
.+|+|++-+||.- +||+|-.||.|+||+..++..+.+ +.||..+|+++.|...|.+||+|
T Consensus 66 ~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rlaSG 125 (888)
T KOG0306|consen 66 AEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLASG 125 (888)
T ss_pred ceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEeec
Confidence 5899999999986 789999999999999998866544 88999999999999999999999
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1091)
|.|+.|.+||+-...-+. .+.||...|+.+-|..+.+ ++++.+.|+.|++||+++..|..+...|.+.++.+++.
T Consensus 126 skDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~ 200 (888)
T KOG0306|consen 126 SKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLD 200 (888)
T ss_pred CCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEEEe
Confidence 999999999998754333 6889999999999998777 89999999999999999999999999999999999995
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCce------------e-eecCCCCcEEEEEEcCCCCEEEEEecCC----------
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGAR------------V-DYDAPGLGCTRMAYSANGRRLFSCGTSK---------- 551 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~---------- 551 (1091)
+ ..+++++.|+.+++|++...... . ......+....+...++++++++-+.++
T Consensus 201 ~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~ 276 (888)
T KOG0306|consen 201 E----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSK 276 (888)
T ss_pred c----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCH
Confidence 4 58999999999999998210000 0 0011111222233333333333322211
Q ss_pred ----------------------------------------------------------------CCceEEEEEecCC-ce
Q 001367 552 ----------------------------------------------------------------EGESFLVEWNESE-GA 566 (1091)
Q Consensus 552 ----------------------------------------------------------------~~~~~i~iwd~~~-~~ 566 (1091)
-.++.+..|.+.. +.
T Consensus 277 ~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~ 356 (888)
T KOG0306|consen 277 EEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGK 356 (888)
T ss_pred HHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCC
Confidence 0023344444433 11
Q ss_pred e--------eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 567 I--------KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 567 ~--------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
. ...+.+|. ..|.+++++.+...+++| ..+.+.+|+..+.+++.++... .+.+..|-|.+++++
T Consensus 357 ~~p~~~~~~~i~~~GHR---~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~Iv 428 (888)
T KOG0306|consen 357 TSPEADRTSNIEIGGHR---SDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYIV 428 (888)
T ss_pred CCccccccceeeeccch---hheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc----cEEEEEecCCCceEE
Confidence 1 12344555 899999999876555554 5678999999999999999765 478899999999999
Q ss_pred EEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccC
Q 001367 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFAR 718 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~ 718 (1091)
+|...|.+.+||+.+...+..++.|.+.++.++. +||++.+++++.|.+|++|++....
T Consensus 429 ~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~---------------------~pD~~g~vT~saDktVkfWdf~l~~ 487 (888)
T KOG0306|consen 429 LGTKNGELQVFDLASASLVETIRAHDGAIWSISL---------------------SPDNKGFVTGSADKTVKFWDFKLVV 487 (888)
T ss_pred EeccCCceEEEEeehhhhhhhhhccccceeeeee---------------------cCCCCceEEecCCcEEEEEeEEEEe
Confidence 9999999999999998888888888777777766 6666777777777777777754100
Q ss_pred CcccceeecCCccccccEEEEEEecC-CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCC
Q 001367 719 PSECQSLLLPSKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 797 (1091)
Q Consensus 719 ~~~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1091)
. -|. .+.++..-.. .+.
T Consensus 488 ~----------------------~~gt~~k~lsl~~~------------------------------------rtL---- 505 (888)
T KOG0306|consen 488 S----------------------VPGTQKKVLSLKHT------------------------------------RTL---- 505 (888)
T ss_pred c----------------------cCcccceeeeeccc------------------------------------eEE----
Confidence 0 000 0000111000 111
Q ss_pred CCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc
Q 001367 798 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 876 (1091)
Q Consensus 798 ~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~ 876 (1091)
.-...|.|+.+||||++||++- |++|++|-+.+.+..-.+.+|.-+|.|+.+|| |++++++|+.|.+|++|-++-|.
T Consensus 506 -el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGD 583 (888)
T KOG0306|consen 506 -ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGD 583 (888)
T ss_pred -eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccch
Confidence 1467899999999999999997 99999999999999999999999999999999 99999999999999999999999
Q ss_pred eeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-Eec
Q 001367 877 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE 955 (1091)
Q Consensus 877 ~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d 955 (1091)
|...+-+|.+.|.++.|-|+..++.|+|.|+.|+-||-+. ...++.+.+|.. .|++++.+|+|.++++ ++|
T Consensus 584 CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k-----Fe~iq~L~~H~~---ev~cLav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 584 CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-----FEEIQKLDGHHS---EVWCLAVSPNGSFVVSSSHD 655 (888)
T ss_pred hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh-----hhhheeeccchh---eeeeeEEcCCCCeEEeccCC
Confidence 9999999999999999999999999999999999999887 557888999987 8999999999999999 688
Q ss_pred CeEEEEEcCCcc
Q 001367 956 THLAIYEAEELT 967 (1091)
Q Consensus 956 ~~i~vwd~~~~~ 967 (1091)
..|++|......
T Consensus 656 ~sIRlwE~tde~ 667 (888)
T KOG0306|consen 656 KSIRLWERTDEI 667 (888)
T ss_pred ceeEeeeccCcc
Confidence 999999976543
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-50 Score=396.43 Aligned_cols=333 Identities=20% Similarity=0.318 Sum_probs=304.3
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
..|...+.||.++|.|++|||+|+ .||+|+.|.++++||+.+....++ .++|...|.|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA 164 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence 467788999999999999999998 569999999999999999887765 889999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC-----CCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-----d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||.|+|||+..+.++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence 999999999999999999999999987654 6889999999999965 556 7999999999999999999999
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEc-----------CCCC-----
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-----------ANGR----- 542 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s-----------~d~~----- 542 (1091)
..+.+|+.+|+|++|- ++ .++++++.|++|++|+...+.....+.+|.+.|+.++.+ |.++
T Consensus 241 ~~lsgHT~~VTCvrwG--G~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWG--GE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEeccCccceEEEEEc--CC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 9999999999999983 23 499999999999999999988999999999999998877 2233
Q ss_pred --------------------EEEEEecCCCCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCe
Q 001367 543 --------------------RLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1091)
Q Consensus 543 --------------------~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~ 601 (1091)
.|++++. +.++.+|+.... +++....+|+ ..|+.+.|+||++++++++.|..
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence 4888875 677999997644 5788888888 89999999999999999999999
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccc
Q 001367 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1091)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (1091)
|++|+..+|+.+..+.+|-. .|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.+
T Consensus 391 VkLW~g~tGk~lasfRGHv~--~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDw--------- 459 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGHVA--AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDW--------- 459 (480)
T ss_pred eeeeeCCCcchhhhhhhccc--eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEe---------
Confidence 99999999999999987744 7999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccCCCCCCCCCccccccccccccccc
Q 001367 682 GIANGSVSNEDPKEDVKPEISVEAENKSEVEK 713 (1091)
Q Consensus 682 ~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~ 713 (1091)
+|||+.+++|+.|+.+++|.
T Consensus 460 ------------spDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 460 ------------SPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ------------cCCCceeecCCCceEEEeec
Confidence 89999999999999999995
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-49 Score=388.77 Aligned_cols=367 Identities=20% Similarity=0.293 Sum_probs=298.0
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.||.++|.|++|+|+|++||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 77999999999999999999999999999999999975444 7899999999999999999 899999999999999
Q ss_pred CCCCcee-EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 472 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 472 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
.++|+++ ..+.+|...|++++|.|- -..|..++|++++.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk- 225 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK- 225 (480)
T ss_pred CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence 9998876 678999999999998553 23466677777765
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
++.++|||+..+.++..+.+|. .+|+|+.|.-+ .++++|+.|++|++|+...|.+...+.+|.+ .|+.++.
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 5568999999999999999998 99999999865 4899999999999999999999999999887 7898888
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
+.|- .|=+|..|.+=+ ...... .....+.. ++-+
T Consensus 297 sTdy-~LRtgaf~~t~~--------~~~~~s----e~~~~Al~---rY~~------------------------------ 330 (480)
T KOG0271|consen 297 STDY-VLRTGAFDHTGR--------KPKSFS----EEQKKALE---RYEA------------------------------ 330 (480)
T ss_pred cchh-hhhccccccccc--------cCCChH----HHHHHHHH---HHHH------------------------------
Confidence 7642 222333222111 100000 00000110 0000
Q ss_pred cccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCce
Q 001367 711 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 790 (1091)
Q Consensus 711 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1091)
+.-..+..+++++.|.++.+|+-...+. ++
T Consensus 331 -----------------------------~~~~~~erlVSgsDd~tlflW~p~~~kk---------------------pi 360 (480)
T KOG0271|consen 331 -----------------------------VLKDSGERLVSGSDDFTLFLWNPFKSKK---------------------PI 360 (480)
T ss_pred -----------------------------hhccCcceeEEecCCceEEEeccccccc---------------------ch
Confidence 0001234577777777777776322110 01
Q ss_pred eeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001367 791 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 869 (1091)
Q Consensus 791 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~i 869 (1091)
. .+ .+|..-|+.+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.++++
T Consensus 361 ~--rm--tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKv 435 (480)
T KOG0271|consen 361 T--RM--TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKV 435 (480)
T ss_pred h--hh--hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEE
Confidence 0 11 25999999999999999999999 99999999999999999999999999999999 9999999999999999
Q ss_pred EeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 870 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 870 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
|++.+.++...+.||.+.|.++.|+|||..+++++.|+.+++|.
T Consensus 436 w~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 436 WDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999995
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-42 Score=365.11 Aligned_cols=624 Identities=14% Similarity=0.147 Sum_probs=414.3
Q ss_pred cEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE-
Q 001367 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1091)
Q Consensus 337 V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 415 (1091)
-..++.+|-.- ++|- -....|.+||+...+.-+ ++..|..+++|+|||++|+|+|+|-
T Consensus 40 ~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc 98 (1080)
T KOG1408|consen 40 ANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC 98 (1080)
T ss_pred CCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence 34566667655 3332 223678999987765443 2666888999999999999999984
Q ss_pred -CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC--CCcEEEEeCCCCceeEEecCCCcceEEEe
Q 001367 416 -SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1091)
Q Consensus 416 -~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 492 (1091)
....++||++..-..+. ++..|...|+|++|+|.++ ++++.+. |-.|.+||++.......- .-...|..++
T Consensus 99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~ 172 (1080)
T KOG1408|consen 99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVA 172 (1080)
T ss_pred CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEE
Confidence 56689999999876444 7889999999999999999 7887765 556788987754333221 2345677888
Q ss_pred ecccCCceEEEEEecCCeEEEEecCCCCceee---ecCCCCcEEEEEEcCCCCEEEEEecCC-CC--------ceEEEEE
Q 001367 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAPGLGCTRMAYSANGRRLFSCGTSK-EG--------ESFLVEW 560 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~~~~s~d~~~l~~~~~~~-~~--------~~~i~iw 560 (1091)
| +++|.|+++.+ ...|++|.++....... +.+...-.-.+ .++.+++....-+ -. .|.+.-
T Consensus 173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~l---r~n~f~avaCg~gicAestfait~qGhLvE- 245 (1080)
T KOG1408|consen 173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNL---RFNEFLAVACGVGICAESTFAITAQGHLVE- 245 (1080)
T ss_pred E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhcccc---ccchhhhhhhcCcccccceEEEecccceee-
Confidence 8 67888888876 46899999887652221 11100000001 1112222111100 00 111111
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC---------------------
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--------------------- 619 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--------------------- 619 (1091)
..+.+++..+.... .....|++.+ .+++++|+.+|.|++|+..+-....+++..
T Consensus 246 -FSsRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~ 320 (1080)
T KOG1408|consen 246 -FSSRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESS 320 (1080)
T ss_pred -echhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccC
Confidence 11222222211111 1334566665 579999999999999998775544433211
Q ss_pred -CCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecc---cccccccceeeeeccccccccccccCCcccCCCCCC
Q 001367 620 -GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA---AGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKE 695 (1091)
Q Consensus 620 -~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 695 (1091)
...+....+.|++....|.+...|..++|||+..-..+.. +-.|...|+.+..-|..-.- ......|
T Consensus 321 ~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~---------~~~aclp 391 (1080)
T KOG1408|consen 321 PAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHS---------PTAACLP 391 (1080)
T ss_pred cccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccC---------cccccCC
Confidence 1123445788999999999999999999999987654433 34577777777655421100 0000022
Q ss_pred CCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceee
Q 001367 696 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 775 (1091)
Q Consensus 696 ~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 775 (1091)
.+ .+++++.|++||+|+++.....+... ... -......+.+. |++..+...
T Consensus 392 ~~-cF~TCSsD~TIRlW~l~~ctnn~vyr--RNi--ls~~l~ki~y~-----------d~~~q~~~d------------- 442 (1080)
T KOG1408|consen 392 RG-CFTTCSSDGTIRLWDLAFCTNNQVYR--RNI--LSANLSKIPYE-----------DSTQQIMHD------------- 442 (1080)
T ss_pred cc-ceeEecCCCcEEEeecccccccceee--ccc--chhhhhcCccc-----------cCchhhhhh-------------
Confidence 22 37899999999999987522211100 000 00011111111 111110000
Q ss_pred ccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCC-
Q 001367 776 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH- 853 (1091)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~- 853 (1091)
...-++|-.... .......+.++++||+|++||+|+ .|.+++|++...+....+..|...|.|+.||..
T Consensus 443 -~~~~~fdka~~s--------~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~ 513 (1080)
T KOG1408|consen 443 -ASAGIFDKALVS--------TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV 513 (1080)
T ss_pred -ccCCcccccchh--------hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch
Confidence 000011111000 012567889999999999999998 599999999999999999999999999999853
Q ss_pred -CCcEEEEEeCCCeEEEEeccC-cceeeeeccccCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeeccC
Q 001367 854 -DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 929 (1091)
Q Consensus 854 -~~~~la~g~~dg~i~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg--~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 929 (1091)
..++||+++.|.-|.|||+.. ..+++++.+|+..|+++.|.-.| ..+++++.|+.|.+--..... .-.....
T Consensus 514 ~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~----~g~~f~r 589 (1080)
T KOG1408|consen 514 LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS----SGRLFPR 589 (1080)
T ss_pred hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc----Cceeccc
Confidence 357999999999999999965 46779999999999999998877 779999999987653332110 0011111
Q ss_pred CC-cCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCC--ccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 930 GV-MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 930 ~~-~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
++ ...-..+..++..|..+++++ +.|..|+|||+.+|+..+.+...| .+....+...|.|-|||+.+.|.++.++|
T Consensus 590 ~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred cccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEE
Confidence 11 111135889999999999998 789999999999999998876554 67778899999999999999999999999
Q ss_pred CCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 1006 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
..+|++++++.. |+..|+ -+.|.+ |=+.|++++.||+|++|.++-
T Consensus 670 f~sgEcvA~m~G--------HsE~VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 670 FVSGECVAQMTG--------HSEAVT--GVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eccchhhhhhcC--------cchhee--eeeecc-cchhheeecCCceEEEEECch
Confidence 999999988772 444454 356787 468899999999999999764
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.1e-41 Score=352.60 Aligned_cols=509 Identities=15% Similarity=0.186 Sum_probs=379.4
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEc--CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~--~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
+.+..|..+++|+|||++|+ ++|+|- ....++||++.....+.+ +..|+-.|+|++|+
T Consensus 72 hlvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs 131 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS 131 (1080)
T ss_pred heecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence 45567888999999999998 568886 456799999998887765 67899999999999
Q ss_pred CCCCEEEEEECC--CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE----
Q 001367 406 PDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY---- 479 (1091)
Q Consensus 406 pdg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~---- 479 (1091)
|.++|+++.+.. -.|.+||+....... -..-...|..++|+.||. |++|.+ ...|++|.++.++...
T Consensus 132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP 204 (1080)
T KOG1408|consen 132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP 204 (1080)
T ss_pred CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence 999999987654 467889887543221 123445799999999999 899888 5689999987665210
Q ss_pred ---------Ee------------------------cCC-----------------CcceEEEeecccCCceEEEEEecCC
Q 001367 480 ---------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDG 509 (1091)
Q Consensus 480 ---------~~------------------------~~~-----------------~~~v~~~~~~~~~~~~~l~s~~~dg 509 (1091)
.+ .|| +....|++. +.++|++|+.+|
T Consensus 205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g 280 (1080)
T KOG1408|consen 205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG 280 (1080)
T ss_pred ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence 00 000 111223333 346899999999
Q ss_pred eEEEEecCCCCceeeecC--------------------C----CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 510 KIKAWLYDSLGARVDYDA--------------------P----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 510 ~i~iwd~~~~~~~~~~~~--------------------~----~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
.|++++..+.....++.- . -.....+.|++...+|.+... +..+++||++.-
T Consensus 281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV 356 (1080)
T ss_pred eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence 999998765433222110 0 012457789998999988875 667999999875
Q ss_pred eeeEEEecccccccceEEEEEcCC-----------CCEEEEEeCCCeEEEEECCCCeeEEEE-------------e----
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTI-------------D---- 617 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~-----------~~~l~~~s~dg~i~iwd~~~~~~~~~~-------------~---- 617 (1091)
..+......-.|...|+.+.--|- ...+++++.|++|++||++.+..-..+ .
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~ 436 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST 436 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence 544332222222355665544331 235889999999999999763211100 0
Q ss_pred ------------------CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccc
Q 001367 618 ------------------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1091)
Q Consensus 618 ------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1091)
.-+....+.+++.+|+|++||+|..-|.+++|++.+.+....+..|...|.|+.|+..
T Consensus 437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p---- 512 (1080)
T KOG1408|consen 437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFP---- 512 (1080)
T ss_pred hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCc----
Confidence 0011235789999999999999999999999999999999999999999999999632
Q ss_pred cccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCC--CeEEEeecCceE
Q 001367 680 GAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGVH 757 (1091)
Q Consensus 680 ~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~dg~i 757 (1091)
.-..++|++++.|.-|.++|+... ..+.....+|...|+++.|...| ..+++++.|..+
T Consensus 513 --------------~~~~kLLASasrdRlIHV~Dv~rn-----y~l~qtld~HSssITsvKFa~~gln~~MiscGADksi 573 (1080)
T KOG1408|consen 513 --------------VLTNKLLASASRDRLIHVYDVKRN-----YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI 573 (1080)
T ss_pred --------------hhhhHhhhhccCCceEEEEecccc-----cchhhhhcccccceeEEEEeecCCceEEEeccCchhh
Confidence 223578999999999999997632 22222335699999999999888 678999998766
Q ss_pred EEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEE
Q 001367 758 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTIL 836 (1091)
Q Consensus 758 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~ 836 (1091)
.+--... ..+|......... -....+..+++.|..+++++++ |..|+||++++++..+
T Consensus 574 mFr~~qk-------------------~~~g~~f~r~t~t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 574 MFRVNQK-------------------ASSGRLFPRHTQT--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred heehhcc-------------------ccCceeccccccc--cccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence 5422110 0111111110000 1345688999999999999998 8999999999999999
Q ss_pred EecC---CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 837 TIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 837 ~~~~---~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
.|++ |.+....+...| .|.|||+.+.|+++.++|+.+|+++.++.||...|+.+.|++|-+.|++++.||.|.||.
T Consensus 633 ~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 9985 556788899999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 001367 914 VDG 916 (1091)
Q Consensus 914 ~~~ 916 (1091)
+..
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 864
No 15
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.3e-39 Score=340.09 Aligned_cols=606 Identities=14% Similarity=0.149 Sum_probs=425.6
Q ss_pred EEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC---EEEEEEC
Q 001367 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAYS 416 (1091)
Q Consensus 340 v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~~ 416 (1091)
.+|.|.+ ++|.|. ...|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456666 346654 4889999977653333 2889999999999999888 8999999
Q ss_pred CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc--eeEEecCCCcceE--EEe
Q 001367 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVY--SLC 492 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~--~~~ 492 (1091)
|+.|++|.++. +.+.....+.+|...+.++. .... ...+...|+.+.+||.+..+ ++..+.-..+.+. +++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 33445556777766655554 3222 22223689999999985555 3333332233333 344
Q ss_pred ecccCCceEEEEEecCCeEEEEecCCC--CceeeecCCCCcEEEEEEcCCCC---EEEEEecCCCCceEEEEEecCCce-
Q 001367 493 PHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA- 566 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~- 566 (1091)
+.+.++.-.++.|+.+..|.++.-... .....+.+|...|.+++|...+. +|++++ .|.+|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 445444456677788888888865533 34557889999999999987554 444544 37889999764322
Q ss_pred --------------------eeEE----------EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeEE
Q 001367 567 --------------------IKRT----------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLT 614 (1091)
Q Consensus 567 --------------------~~~~----------~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~ 614 (1091)
.... +.||. +.|.++.|+|.+..|++++.|.++.+|...+. -.+.
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~ 305 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD 305 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence 1111 22555 99999999999999999999999999987653 4443
Q ss_pred EEeCC---CCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC---CeecccccccccceeeeeccccccccccccCCcc
Q 001367 615 TIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1091)
Q Consensus 615 ~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~ 688 (1091)
..... +.........|+|+++.+++-+..|..++|..... .....+.+|.+.|..++|
T Consensus 306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W---------------- 369 (764)
T KOG1063|consen 306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDW---------------- 369 (764)
T ss_pred EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeee----------------
Confidence 33322 12234678899999999999999999999994433 344567899999999999
Q ss_pred cCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccc-
Q 001367 689 SNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL- 767 (1091)
Q Consensus 689 ~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~- 767 (1091)
.|.|.++++.+.|.+-|+|-.- +....-..+. .++.|...+.++++-+....+++++....+|+|+.+..-.
T Consensus 370 -----~psGeflLsvs~DQTTRlFa~w-g~q~~wHEia-RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~ 442 (764)
T KOG1063|consen 370 -----DPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIA-RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVK 442 (764)
T ss_pred -----cCCCCEEEEeccccceeeeccc-ccccceeeec-ccccccccceeeehccCCceeeecccceeeeeecCcHHHHH
Confidence 7888899999999999997754 1222223333 3357999999999999666688888899999999875422
Q ss_pred ---------------ccccceee-----------------------------ccCCccccCCCCCceeeec-----CCCC
Q 001367 768 ---------------TLSTEATT-----------------------------KVPPRLYQPRHGPQFMVND-----TTDS 798 (1091)
Q Consensus 768 ---------------~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~-----~~~~ 798 (1091)
.+.+.... .....+..+....+++... -+..
T Consensus 443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY 522 (764)
T KOG1063|consen 443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY 522 (764)
T ss_pred HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence 00000000 0000011111111111111 1226
Q ss_pred CCCCCeeEEEecCCCCEEEEEeC------CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEec
Q 001367 799 NSQEAVPCFALSKNDAYLFSASG------GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~~la~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~ 872 (1091)
||...|.+++.+|+|+++|+++. ..|++|+..+......+.+|.-.|+.++||| |+++|++.+.|.++.+|..
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeee
Confidence 89999999999999999999862 3599999999999999999999999999999 9999999999999999988
Q ss_pred cCcce----eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCC--
Q 001367 873 RSSEV----ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-- 946 (1091)
Q Consensus 873 ~~~~~----~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~d-- 946 (1091)
..... ....+.|+.-|.++.|+||++++||+|.|++|++|........ .+... ........|+++++.|-
T Consensus 602 ~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~---~i~~~-a~~~~~~aVTAv~~~~~~~ 677 (764)
T KOG1063|consen 602 QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDK---YISRF-ACLKFSLAVTAVAYLPVDH 677 (764)
T ss_pred ecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhh---hhhhh-chhccCCceeeEEeecccc
Confidence 65321 2346789999999999999999999999999999999875211 11110 11112236888888762
Q ss_pred --C-CEEEEE-ecCeEEEEEcCCccee-----------eeeecCCccCEEEEEEeeC----------CCEEEEEEcCCcE
Q 001367 947 --Q-TRFLLV-HETHLAIYEAEELTCL-----------KQWFPISSVPISQATFSCD----------CRMVFTSFVDGTL 1001 (1091)
Q Consensus 947 --g-~~la~~-~d~~i~vwd~~~~~~~-----------~~~~~~h~~~v~~v~fs~d----------g~~l~t~~~dg~v 1001 (1091)
. ..+++| ..|.|.+|....-... ..-..+|...|..+.|+|. ...|++|+.|.++
T Consensus 678 ~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~v 757 (764)
T KOG1063|consen 678 NEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESV 757 (764)
T ss_pred ccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeeccccee
Confidence 2 245556 6689999986511100 1112346888999999974 2357999999999
Q ss_pred EEEeCC
Q 001367 1002 SIHEAS 1007 (1091)
Q Consensus 1002 ~iwd~~ 1007 (1091)
+++++.
T Consensus 758 ri~nv~ 763 (764)
T KOG1063|consen 758 RIFNVD 763 (764)
T ss_pred EEeecc
Confidence 999864
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-40 Score=334.87 Aligned_cols=345 Identities=19% Similarity=0.269 Sum_probs=289.8
Q ss_pred CchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCC--CCceeeeceeEEeccccccceeeeeecCCCccE
Q 001367 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1091)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1091)
+|....+.+. |..+|.+.+|+|-..-++|+|+.|-+.++|++.. ...... .++..|...--+ -...+..|
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q-----~~lrh~~~~~~~--s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ-----LVLRHCIREGGK--SVPSNKDV 238 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh-----hhhhhhhhhhcc--cCCccCCc
Confidence 5666667777 9999999999997765789999999999999874 111110 000111100000 01134689
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
++++|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|+..+
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999988753 22 6788999999999999999 89999999999999999999999
Q ss_pred EecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
.+.-|..+-..+.|-. ...+++.+.||.|+++.+....+..++.+|.++|.++.|.|.|..|++++. |+++++
T Consensus 313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 9999998866677742 247999999999999999999999999999999999999999999999986 778999
Q ss_pred EecCCceeeEEEecccccccceEEEEEcCCC---------CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
|++........+..|. ..|..+.|+|.| ..+++++.|++|++||+..+.++..+..|.. +|++++|
T Consensus 386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvaf 460 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAF 460 (524)
T ss_pred eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEe
Confidence 9999999999999988 899999999975 4688999999999999999999999976654 7999999
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
+|+|+++|+|+.||.|.+|+.++++.++...
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~------------------------------------------------- 491 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ------------------------------------------------- 491 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence 9999999999999999999999887665443
Q ss_pred cccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeec
Q 001367 711 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 762 (1091)
Q Consensus 711 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~ 762 (1091)
..+.|..+.|+.+|..+.++..+|.+.+-|+
T Consensus 492 ---------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ---------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ---------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 2345788899999999999999998888765
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-41 Score=336.43 Aligned_cols=284 Identities=19% Similarity=0.249 Sum_probs=266.6
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC--C
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--G 408 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 408 (1091)
.|.+.+|..+.||+|++ ++|||+.+|.++||+..++..+.. |.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 46778999999999998 789999999999999999876654 8899999999999996 6
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
..||+|+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876655 6889999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
.+++|. +||.++++|+.|..-+|||++++.++..+.+|..+|.++.|+|+|..|++|+. |++++|||++....+
T Consensus 307 ~~iaf~--~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQ--PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEec--CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 999995 57889999999999999999999999999999999999999999999999986 778999999999999
Q ss_pred EEEecccccccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 569 RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
..+.+|. +-|+.|.|+| .|.+|++++.|++++||...++.+++.+.+|.. .|.++.+++|+..+++++.|.+++
T Consensus 381 y~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 381 YTIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred eeccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceee
Confidence 9999988 9999999998 678899999999999999999999999998876 699999999999999999999999
Q ss_pred EEE
Q 001367 648 ILE 650 (1091)
Q Consensus 648 iwd 650 (1091)
+|.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 995
No 18
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=3.8e-37 Score=332.12 Aligned_cols=581 Identities=15% Similarity=0.145 Sum_probs=431.5
Q ss_pred EEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCE
Q 001367 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1091)
Q Consensus 340 v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1091)
..|..-|..++++.+.+.+..+||.+.-..+.. -..+...|+|++=..+--|.|++ ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~vy~A~g---~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDYVYVASG---NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCceEEEecC---cE
Confidence 556666666778888999999999988776653 23467889998876554444443 23
Q ss_pred EEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-cee----EEecCCCcceEEEeec
Q 001367 420 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 420 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~----~~~~~~~~~v~~~~~~ 494 (1091)
|.+|. .|+.++. .+.+|.+.|.-+.- -|. .++++..++.+.||+..++ +.+ .-++.....|+++. +
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 55554 3433333 45577777776643 466 6889999999999998874 221 11222223377664 4
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecc
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1091)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|.|.+++++.++.+..|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 4433357899999999999999999999999999999999999998888888876 677999999999999999876
Q ss_pred cccccceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeEEEEe-CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 575 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 575 ~~~~~~v~~v~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
. +.|++++|..||+.+++ |+..|.+.+||++..+.+..+. .|. ..+....|.|....+++++.|+.+++|-.+
T Consensus 244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~--~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY--GSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc--CCcccceecCCCceEeeccCCCceeEEEee
Confidence 5 79999999999987655 6677999999999998887776 342 368899999999999999999998888666
Q ss_pred CC----CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecC
Q 001367 653 ES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 728 (1091)
Q Consensus 653 ~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 728 (1091)
++ +.++...+|..+-.+++|. ...|..+.+++.|++.+.+++......+....
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy--------------------~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~--- 375 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFY--------------------GSQGHFILSAKQDRTLRSFSVISESQSQELGQ--- 375 (910)
T ss_pred CCCCcchheeeccCCCCCchheeee--------------------ccCcEEEEecccCcchhhhhhhHHHHhHhhcc---
Confidence 44 5566677899999999885 56788899999999999888643221111100
Q ss_pred CccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001367 729 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 808 (1091)
Q Consensus 729 ~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 808 (1091)
......++ .+.+.. ...+ .-.+|..++
T Consensus 376 ----------~~~~~~~k---------k~~~~~------------------------------~~~~----k~p~i~~fa 402 (910)
T KOG1539|consen 376 ----------LHNKKRAK---------KVNVFS------------------------------TEKL----KLPPIVEFA 402 (910)
T ss_pred ----------cccccccc---------cccccc------------------------------hhhh----cCCcceeee
Confidence 00000000 000000 0000 112333333
Q ss_pred ecCC----CCEEEEEe--CCeEEEEEccCcee-EEEe-----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc
Q 001367 809 LSKN----DAYLFSAS--GGVISLYIVMTFKT-ILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 876 (1091)
Q Consensus 809 ~s~d----g~~la~~~--dg~i~iwd~~~~~~-~~~~-----~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~ 876 (1091)
+... -.-++++. +...+.|++..... ...+ +.....+++++.++ .|++.+.|...|.|-+|++++|-
T Consensus 403 ~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi 481 (910)
T KOG1539|consen 403 FENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGI 481 (910)
T ss_pred cccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCe
Confidence 3221 11223332 46788898876554 2222 22346899999999 99999999999999999999998
Q ss_pred eeeee---ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-
Q 001367 877 VISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 952 (1091)
Q Consensus 877 ~~~~l---~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~- 952 (1091)
....+ ..|.++|++++...-++.++|++.+|.+++||++.... +...+-. ..+.++..+.....+|+
T Consensus 482 ~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~l~----~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 482 HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-----KKSLRLG----SSITGIVYHRVSDLLAIA 552 (910)
T ss_pred eecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce-----eeeeccC----CCcceeeeeehhhhhhhh
Confidence 88888 58999999999988889999999999999999998542 2222221 24778888888888888
Q ss_pred EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccce
Q 001367 953 VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1032 (1091)
Q Consensus 953 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1032 (1091)
..|-.|+++|+.+.+.++. +.||+..|++++|||||++|++++.|++|++||+.++.++..+... ..+
T Consensus 553 ~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~~ 620 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SPC 620 (910)
T ss_pred cCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------Ccc
Confidence 5677899999999998888 5689999999999999999999999999999999999998766521 124
Q ss_pred eEEEeCCCCCCeEEEEecC-CcEEEEec
Q 001367 1033 HAIAAHPLKPTQFAVGLTN-GEVYVIEP 1059 (1091)
Q Consensus 1033 ~~~~~~p~d~~~l~~g~~d-g~v~~w~~ 1059 (1091)
..+.|+|+ |.+|+|+..| ..|++|.=
T Consensus 621 ~sls~SPn-gD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 621 TSLSFSPN-GDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eeeEECCC-CCEEEEEEecCceEEEEEc
Confidence 57899994 9999999999 68999974
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-40 Score=329.91 Aligned_cols=285 Identities=17% Similarity=0.257 Sum_probs=266.8
Q ss_pred CCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 473 (1091)
|.+.+|..+.||+|++.||||+.+|.++||+..+...+. ++.||...|.++.|+|.....-++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456799999999999999999999999999999875444 78999999999999998422379999999999999999
Q ss_pred CCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
+..++..+.+|...|..++|+| +|++|++++.|.+-++||++++.......+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 9999999999999999999966 6689999999999999999999999999999999999999999999999987
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc-
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 632 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 632 (1091)
|..-++||+++|.++..+.+|. ..|.+|+|+|+|..+++||.|++++|||++..+.+.+++.|.. .|..|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence 6678999999999999999988 9999999999999999999999999999999999999988866 689999998
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccc
Q 001367 633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
.|.+|++++.|+++++|...+..+++.+.+|.+.|.++++ ++|++.+++++.|.++++|
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Di---------------------s~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDI---------------------SPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEe---------------------ccCCceEEEeccCceeeec
Confidence 7899999999999999999999999999999999999998 8899999999999999999
Q ss_pred c
Q 001367 713 K 713 (1091)
Q Consensus 713 ~ 713 (1091)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 6
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=301.19 Aligned_cols=295 Identities=17% Similarity=0.250 Sum_probs=268.6
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
...++|+||.+.|.++.|++|.+ .+++++.||.+.|||.-|...++. ++-....|..+||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~ 105 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAY 105 (343)
T ss_pred eeEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEE
Confidence 45589999999999999999998 569999999999999988877654 3446789999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCc---ccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~---~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1091)
+|.|+++|+|+-|+...||++.+.+ ..+...++.+|.+.+.++.|.+|+. |+|++.|.+..+||+++|+.+..|
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEe
Confidence 9999999999999999999998652 2344457889999999999999876 999999999999999999999999
Q ss_pred cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 561 (1091)
.+|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|.+++|.|+|.-+++|+. ++..++||
T Consensus 183 ~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyD 257 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYD 257 (343)
T ss_pred cCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEe
Confidence 999999999999875 7789999999999999999999999999999999999999999999999986 77899999
Q ss_pred cCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
++..+.+..+.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|+. .|.++..+|||.-+++|+
T Consensus 258 lRaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 258 LRADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGS 334 (343)
T ss_pred ecCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecc
Confidence 99999888887433 457899999999999999999999999999999999999998876 799999999999999999
Q ss_pred CCCeEEEEE
Q 001367 642 NENRIKILE 650 (1091)
Q Consensus 642 ~dg~i~iwd 650 (1091)
.|..++||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-38 Score=301.20 Aligned_cols=298 Identities=20% Similarity=0.283 Sum_probs=256.0
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
+.-+|.+|+++|+.++..+.+..++.+++.|.++.+|++.......- .....+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEEc
Confidence 45689999999999999999888999999999999999876532221 1122388999999999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC-
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH- 484 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~- 484 (1091)
+||++.++++.|+++++||+.+|+..+ .|.||...|.+++|++|++ .+++|+.|.+|++||.. |.+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence 999999999999999999999996554 6889999999999999999 69999999999999965 4555555443
Q ss_pred -CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 485 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 485 -~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
.+.|.+++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++++. ++.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEcc
Confidence 78999999999988899999999999999999999999999999999999999999999999875 6779999999
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-------CCCCceEEEccCCCE
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTL 636 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~ 636 (1091)
.++.+..+... ..|.+++|+|+..+|+.+. +..|+|||++++..+..+..... .+...+++|++||..
T Consensus 223 ~~k~lysl~a~----~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~t 297 (315)
T KOG0279|consen 223 EGKNLYSLEAF----DIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQT 297 (315)
T ss_pred CCceeEeccCC----CeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcE
Confidence 99998887764 5899999999876655554 45599999999988877754322 233567899999999
Q ss_pred EEEEECCCeEEEEECC
Q 001367 637 LAVIANENRIKILETP 652 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~ 652 (1091)
|+.|..|+.|++|.+.
T Consensus 298 Lf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 298 LFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeeecCCcEEEEEee
Confidence 9999999999999864
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-37 Score=323.85 Aligned_cols=480 Identities=18% Similarity=0.290 Sum_probs=357.6
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
.+++..|++.|.++.|+|....+ .++-..|.|.|||.++...++. +.-...+|.+..|-+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~-la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfia 65 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWI-LAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIA 65 (794)
T ss_pred hhHhhccCCceeeeecCCCCceE-EEeeecCeeEEEecccceeeee-------------------eeecccchhhheeee
Confidence 35567799999999999999854 5667789999999999998875 333567999999999
Q ss_pred CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecCCC
Q 001367 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHG 485 (1091)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~ 485 (1091)
--+++++|+.|..|+||+..+++.++ .+..|.+.|.+++.+|... +++|+|.|-+|++||.+.+ .+.++|.||.
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred ccceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 99999999999999999999987665 7899999999999999888 8999999999999999865 7789999999
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCC--CEEEEEecCCCCceEEEEEecC
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~--~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
.-|.+++|.|. |...+++++.|++|++|.+.+..+.+++.+|...|.++.+-+-| .+|++++. +..+.+||.+
T Consensus 141 HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQ 215 (794)
T KOG0276|consen 141 HYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQ 215 (794)
T ss_pred eEEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecc
Confidence 99999999986 55799999999999999999999999999999999999998755 58888875 7789999999
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1091)
+..+++++.||. ..|..++|+|.-..+++|++||+++||+..+.++..++..... .+.+++-.+.++.+++|.++
T Consensus 216 tk~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 216 TKSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred hHHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccC
Confidence 999999999999 8999999999999999999999999999999998888776544 68999999988999999998
Q ss_pred CeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcc-cccccccccccccccccCCccc
Q 001367 644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPE-ISVEAENKSEVEKPLFARPSEC 722 (1091)
Q Consensus 644 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l-~s~~~d~~i~~w~~~~~~~~~~ 722 (1091)
|.|.+ .+....+...+.... .+-|+..+.+.++... .+....--.||..+ ++.-.-|++
T Consensus 291 g~i~v-~lgreeP~vsMd~~g----KIiwa~~~ei~~~~~k--s~~~~~ev~DgErL~LsvKeLgs~------------- 350 (794)
T KOG0276|consen 291 GSVTV-KLGREEPAVSMDSNG----KIIWAVHSEIQAVNLK--SVGAQKEVTDGERLPLSVKELGSV------------- 350 (794)
T ss_pred CcEEE-EccCCCCceeecCCc----cEEEEcCceeeeeece--eccCcccccCCccccchhhhcccc-------------
Confidence 87765 333332222221111 1112111111110000 00000001111111 111111111
Q ss_pred ceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCC
Q 001367 723 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 802 (1091)
Q Consensus 723 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1091)
.-....++.+|+|+ +++.+.||...||.-- -|.- ..-+
T Consensus 351 ----------eiyPq~L~hsPNGr-fV~VcgdGEyiIyTal-----------------a~Rn--------------K~fG 388 (794)
T KOG0276|consen 351 ----------EIYPQTLAHSPNGR-FVVVCGDGEYIIYTAL-----------------ALRN--------------KAFG 388 (794)
T ss_pred ----------ccchHHhccCCCCc-EEEEecCccEEEEEee-----------------ehhh--------------cccc
Confidence 11234678899999 5555667787776410 0110 1345
Q ss_pred CeeEEEecCCCCEEEEE-eCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee
Q 001367 803 AVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 881 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l 881 (1091)
.-..++|++|....|+- +++.|+++ +.++..+.+..... +-.+. +|.+|.+.+ ++.+++||..+++.++++
T Consensus 389 ~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~---~e~i~--gg~Llg~~s-s~~~~fydW~~~~lVrrI 460 (794)
T KOG0276|consen 389 SGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS---AEGIF--GGPLLGVRS-SDFLCFYDWESGELVRRI 460 (794)
T ss_pred cceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc---eeeec--CCceEEEEe-CCeEEEEEcccceEEEEE
Confidence 56778899995555555 57889988 66777666653322 22222 566777665 557999999999999888
Q ss_pred ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 882 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 882 ~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
.-. ...+.|+.+|.+++.++.|. .++..+.
T Consensus 461 ~v~---~k~v~w~d~g~lVai~~d~S-fyil~~n 490 (794)
T KOG0276|consen 461 EVT---SKHVYWSDNGELVAIAGDDS-FYILKFN 490 (794)
T ss_pred eec---cceeEEecCCCEEEEEecCc-eeEEEec
Confidence 643 34588999999988887665 4555443
No 23
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=6.3e-35 Score=315.02 Aligned_cols=558 Identities=13% Similarity=0.190 Sum_probs=412.2
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 410 (1091)
..+.+.|+|++=+.+-- ++|.| ..|.+|. .|+.+. .+..+|...|.-+. |=|.+
T Consensus 73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~------------------~~~~~~~a~v~~l~--~fGe~ 126 (910)
T KOG1539|consen 73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIR------------------HTTLLHGAKVHLLL--PFGEH 126 (910)
T ss_pred CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEE------------------EEeccccceEEEEe--eecce
Confidence 46778999998877653 44443 4455554 444332 12556777776654 45889
Q ss_pred EEEEECCCEEEEEEeeCC-cccceeEEEe-ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 411 LGVAYSKHIVQLYAYHGG-SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~-~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
++++..++.+.||+..++ +.......+. ...+.|+++. +|..--..++.|+.+|.+.+|++++++.+++++++...|
T Consensus 127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I 205 (910)
T KOG1539|consen 127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI 205 (910)
T ss_pred EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence 999999999999999985 2211111222 2222366654 554322258889999999999999999999999999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
+++.-+|. -..++.|..+|+|.++++...+.+..++...++|++++|..||..+.+.+. ..|.+.+||++..+.+
T Consensus 206 T~ieqsPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 206 TAIEQSPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLI 280 (910)
T ss_pred eEeccCCc--ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeee
Confidence 99876544 458999999999999999999999999988899999999999998877664 2567999999998887
Q ss_pred EEEe-cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC--C--eeEEEEeCCCCCCCCceEEEc-cCCCEEEEEEC
Q 001367 569 RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V--QLLTTIDAGGGLPENPRICFN-KNGTLLAVIAN 642 (1091)
Q Consensus 569 ~~~~-~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~--~--~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~ 642 (1091)
.... .|. +.+....|.|....+++++.|+.+++|=.++ | +.++.-.+| ..+..++.|. .+|..+.+++.
T Consensus 281 ~v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GH--s~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 281 NVTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGH--SAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred eeeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCC--CCCchheeeeccCcEEEEeccc
Confidence 7776 444 7889999999999999999999988885554 3 233333344 3466788887 68899999999
Q ss_pred CCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCccc
Q 001367 643 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 722 (1091)
Q Consensus 643 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~ 722 (1091)
|++++.+++.....-+.+..... .... +.+.+....
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~----------------------------~~~~---------kk~~~~~~~------- 391 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHN----------------------------KKRA---------KKVNVFSTE------- 391 (910)
T ss_pred CcchhhhhhhHHHHhHhhccccc----------------------------cccc---------ccccccchh-------
Confidence 99999888764322222111000 0000 011111100
Q ss_pred ceeecCCccccccEEEEEEecCC----CeEEEee-cCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCC
Q 001367 723 QSLLLPSKVKANKISRLTYNNGG----QAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 797 (1091)
Q Consensus 723 ~~~~~~~~~~~~~i~~~~~s~dg----~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1091)
...-.+|..+++...- ..++++. .+...+.|++..... |+..... -+.
T Consensus 392 -------~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~-------------------G~~~L~~-~~~ 444 (910)
T KOG1539|consen 392 -------KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS-------------------GRHVLDP-KRF 444 (910)
T ss_pred -------hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc-------------------ccEEecC-ccc
Confidence 0012234444443321 1234443 456778888764321 1111110 001
Q ss_pred CCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEe---cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEecc
Q 001367 798 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI---MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 873 (1091)
Q Consensus 798 ~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~ 873 (1091)
......++++++++.|++.+.|. .|.|.+|++++|-....+ ..|..+|+.++... -++.+++++.+|-+.+||..
T Consensus 445 ~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 445 KKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred cccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecC
Confidence 12457889999999999999997 699999999999998888 57999999999988 78899999999999999999
Q ss_pred CcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-
Q 001367 874 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 952 (1091)
Q Consensus 874 ~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~- 952 (1091)
+...+..+. -...++++..+.....+|.+..|-.|+++|..+ .+..+.+.||.. .|++++|||||++|++
T Consensus 524 ~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t-----~kvvR~f~gh~n---ritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 524 KKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT-----RKVVREFWGHGN---RITDMTFSPDGRWLISA 594 (910)
T ss_pred Ccceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchh-----hhhhHHhhcccc---ceeeeEeCCCCcEEEEe
Confidence 888777776 345588888888888999999999999999998 457778888887 9999999999999999
Q ss_pred EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-CcEEEEeCCC
Q 001367 953 VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASN 1008 (1091)
Q Consensus 953 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-g~v~iwd~~~ 1008 (1091)
+.|++|++||+.++.++-.+.. ..+.+++.|||+|.+|||+..| .-|++|.-.+
T Consensus 595 smD~tIr~wDlpt~~lID~~~v--d~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLLV--DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred ecCCcEEEEeccCcceeeeEec--CCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 6899999999999999987654 6789999999999999999998 5699996443
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4e-37 Score=292.30 Aligned_cols=287 Identities=15% Similarity=0.171 Sum_probs=266.2
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
+++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ ++++|+.|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 488999999999999999999999999999999998875433 4566778899999999999 89999999999999
Q ss_pred eCCCC------ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcC-CCCE
Q 001367 471 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 543 (1091)
Q Consensus 471 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~ 543 (1091)
++.+. ...+.+.+|.+-+.++.|.. ...|++++.|.+..+||++++.....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99865 34577899999999999854 35899999999999999999999999999999999999999 9999
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1091)
+++++. +...++||++.+..++.|.+|. ..|++++|.|+|.-+++|++|++.++||++..+.+..+.......
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 999987 6679999999999999999999 999999999999999999999999999999999999998877778
Q ss_pred CCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
.|++++||..|++|.+|..|.++.+||.-.++.+..+.+|...|.++.. +|||..+++|
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~---------------------s~DG~av~Tg 333 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV---------------------SPDGMAVATG 333 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE---------------------CCCCcEEEec
Confidence 8999999999999999999999999999999999999999999999998 8889999999
Q ss_pred cccccccccc
Q 001367 704 EAENKSEVEK 713 (1091)
Q Consensus 704 ~~d~~i~~w~ 713 (1091)
+.|.++|+|.
T Consensus 334 SWDs~lriW~ 343 (343)
T KOG0286|consen 334 SWDSTLRIWA 343 (343)
T ss_pred chhHheeecC
Confidence 9999999994
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.2e-37 Score=283.16 Aligned_cols=293 Identities=16% Similarity=0.268 Sum_probs=251.9
Q ss_pred CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEE
Q 001367 345 VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 424 (1091)
Q Consensus 345 dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd 424 (1091)
|..-|||+++.|.+|++|...+|.+.++ +....+.|..+.+.||+++||+++... |++||
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD 67 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYD 67 (311)
T ss_pred CCceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEE
Confidence 3446899999999999999999999876 444678999999999999999997665 99999
Q ss_pred eeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEE
Q 001367 425 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFS 504 (1091)
Q Consensus 425 ~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 504 (1091)
+.++..- ...++.+|.+.|+++.|..||+ .++|||+||+++|||++...+.+.++ |..+|+++.++|+ ...|++
T Consensus 68 ~~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn--QteLis 141 (311)
T KOG0315|consen 68 LNSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN--QTELIS 141 (311)
T ss_pred ccCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC--cceEEe
Confidence 9998753 5568999999999999999999 89999999999999999977777665 7799999999764 468999
Q ss_pred EecCCeEEEEecCCCCceeee-cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce------eeEEEeccccc
Q 001367 505 ISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQ 577 (1091)
Q Consensus 505 ~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~ 577 (1091)
+..+|.|++||+........+ ......|.++...|||.+++++.. .|..++|++-+.. ++.+++.|.
T Consensus 142 ~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~-- 215 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN-- 215 (311)
T ss_pred ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc--
Confidence 999999999999987665544 344568999999999999998865 6779999987643 455566666
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCe
Q 001367 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1091)
Q Consensus 578 ~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1091)
..+..+.++||+++|+++|.|.+++||+.++. +....+.++ ...+..++||.||.+|++++.|+.+++|++..++.
T Consensus 216 -~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 216 -GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred -ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccCce
Confidence 88999999999999999999999999999988 444445444 45799999999999999999999999999999999
Q ss_pred ecccccccccceeeee
Q 001367 657 VDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 657 ~~~~~~~~~~v~~~~~ 672 (1091)
+....+|.....|++.
T Consensus 293 v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 293 VRQYQGHHKAAVCVAL 308 (311)
T ss_pred eeecCCcccccEEEEe
Confidence 9999999988877765
No 26
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.6e-35 Score=313.22 Aligned_cols=598 Identities=14% Similarity=0.177 Sum_probs=407.0
Q ss_pred EEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCc-eEEEEeeCCCcEEEEeCCCC--cee
Q 001367 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVWDAVTG--SRT 478 (1091)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-~~l~s~~~d~~i~iwd~~~~--~~~ 478 (1091)
.+|.|.+ .+|.| ....|.+||.... .....+.||.++|+|+.|-|+.+. ..+++|+.|+.|.+|.++.. .++
T Consensus 20 ~sw~~~~-~vafG-a~~~Iav~dp~k~---~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i 94 (764)
T KOG1063|consen 20 SSWGPGG-LVAFG-AGPAIAVADPEKI---LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI 94 (764)
T ss_pred ccccccc-eEEec-CCceEEEeCcccc---eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE
Confidence 3444433 44444 5567999998765 234478899999999999987651 15899999999999999843 345
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCC--ceeeecCCCCc--EEEEEEcC-CCCEEEEEecCCCC
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLG--CTRMAYSA-NGRRLFSCGTSKEG 553 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~--i~~~~~s~-d~~~l~~~~~~~~~ 553 (1091)
..+.+|...+.++.- ......+...|+.+.+||.+..+ ....+....+. ..|+++.+ .+.++.+++.+
T Consensus 95 ~~~~g~~~~~~cv~a----~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs--- 167 (764)
T KOG1063|consen 95 YTIQGHCKECVCVVA----RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS--- 167 (764)
T ss_pred EeecCcceeEEEEEe----eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc---
Confidence 677777766666532 11223333789999999985544 11122222222 34566667 45566666542
Q ss_pred ceEEEEEecCCc--eeeEEEecccccccceEEEEEcCCCC---EEEEEeCCCeEEEEECCCCe-----------------
Q 001367 554 ESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQ----------------- 611 (1091)
Q Consensus 554 ~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~---~l~~~s~dg~i~iwd~~~~~----------------- 611 (1091)
+..|.++.-... +.+..+.||. +.|.+++|...+. +++++|.|..||||.+.-+.
T Consensus 168 ~~~v~~~s~~~d~f~~v~el~GH~---DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~ 244 (764)
T KOG1063|consen 168 KFVVDLYSSSADSFARVAELEGHT---DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL 244 (764)
T ss_pred ceEEEEeccCCcceeEEEEeeccc---hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence 556667655433 4566788888 9999999986554 67789999999999764322
Q ss_pred ----eEEEEe--------CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccc
Q 001367 612 ----LLTTID--------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1091)
Q Consensus 612 ----~~~~~~--------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1091)
....+. ..++...|+++.|+|.+..|++++.|.++.+|...+..-+..- .+.+ .
T Consensus 245 ~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~--------~vRl------G 310 (764)
T KOG1063|consen 245 PVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD--------VVRL------G 310 (764)
T ss_pred ceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEE--------EEEe------e
Confidence 111111 1244558999999999999999999999999987654222111 1111 1
Q ss_pred cccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEE
Q 001367 680 GAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 759 (1091)
Q Consensus 680 ~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~v 759 (1091)
.+|...++|.+...+|+++.+++-+..|..++|.. .+...... .....+|...|+.++|.|.|+++++.+.|.+-|+
T Consensus 311 e~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt--~d~~~w~~-~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRl 387 (764)
T KOG1063|consen 311 EVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT--KDKTFWTQ-EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRL 387 (764)
T ss_pred cccccccceeeEEEcCCCCEEEEecccCcEEEEec--cCccceee-ccccccccccceeeeecCCCCEEEEeccccceee
Confidence 12233345555555999999999999999999992 22222222 2223579999999999999999999999999988
Q ss_pred eecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeC-CeEEEEEccC-------
Q 001367 760 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT------- 831 (1091)
Q Consensus 760 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~~------- 831 (1091)
+---..+.+ |.- +.. .+-|...++|+++-+....+++|.| ..+|+|+...
T Consensus 388 Fa~wg~q~~-------------wHE-----iaR----PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~ 445 (764)
T KOG1063|consen 388 FARWGRQQE-------------WHE-----IAR----PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLM 445 (764)
T ss_pred ecccccccc-------------eee-----ecc----cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHH
Confidence 753211110 111 111 1127778888888875455555554 5577776421
Q ss_pred ------------------------------------cee---------------------------------EEEecCCC
Q 001367 832 ------------------------------------FKT---------------------------------ILTIMPPS 842 (1091)
Q Consensus 832 ------------------------------------~~~---------------------------------~~~~~~~~ 842 (1091)
|.. ++.+.+|.
T Consensus 446 ~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG 525 (764)
T KOG1063|consen 446 AICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG 525 (764)
T ss_pred HHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc
Confidence 100 01234778
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCC-----eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 917 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg-----~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~ 917 (1091)
..|.+++.+| +++++|+++... .|++|+..+-..+..+.+|+-.|+.++|||||++|+++|.|+++.+|.....
T Consensus 526 yEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~ 604 (764)
T KOG1063|consen 526 YEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQED 604 (764)
T ss_pred eeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence 8899999999 899999987543 7999999998888999999999999999999999999999999999998654
Q ss_pred ceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCc--ceeee-eecCCccCEEEEEEee-----C
Q 001367 918 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPISSVPISQATFSC-----D 988 (1091)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~--~~~~~-~~~~h~~~v~~v~fs~-----d 988 (1091)
.... ..+...+.|.. -|.+..|+||++++|+ +.|.+|.+|..... +.+.. -...+...|+.+++.| .
T Consensus 605 ~~~e-~~fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~ 680 (764)
T KOG1063|consen 605 IKDE-FRFACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEK 680 (764)
T ss_pred cchh-hhhccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccc
Confidence 3222 22333455554 6899999999999998 68999999999887 55544 2344688999999987 2
Q ss_pred CCEEEEEEcCCcEEEEeCCCCc----eEEEeecccccCCCCcccccceeEEEeCCC---------CCCeEEEEecCCcEE
Q 001367 989 CRMVFTSFVDGTLSIHEASNLE----VQCRILSTAYLRPTTSCLHVYPHAIAAHPL---------KPTQFAVGLTNGEVY 1055 (1091)
Q Consensus 989 g~~l~t~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~---------d~~~l~~g~~dg~v~ 1055 (1091)
+..+++|-+.|.|.+|....-. ...........+...+...|. .+.|.|. +...|++|++|.+++
T Consensus 681 ~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vr 758 (764)
T KOG1063|consen 681 GDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVR 758 (764)
T ss_pred cceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhh--eeEeccccccccccccceeEEeeecccceeE
Confidence 3378889999999999965211 110111111111222344455 4566663 123579999999999
Q ss_pred EEecC
Q 001367 1056 VIEPN 1060 (1091)
Q Consensus 1056 ~w~~~ 1060 (1091)
++++.
T Consensus 759 i~nv~ 763 (764)
T KOG1063|consen 759 IFNVD 763 (764)
T ss_pred Eeecc
Confidence 99874
No 27
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-36 Score=282.10 Aligned_cols=295 Identities=16% Similarity=0.189 Sum_probs=247.9
Q ss_pred ccccccEEEEEEecCC-CeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001367 730 KVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 808 (1091)
Q Consensus 730 ~~~~~~i~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 808 (1091)
.+|.+.|..++..+.+ ..+++++.|..+.+|++... |...|..... +. ||...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence 5699999999999884 46677888999999998654 2233332222 32 5999999999
Q ss_pred ecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeecc--cc
Q 001367 809 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG--HS 885 (1091)
Q Consensus 809 ~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~--h~ 885 (1091)
+++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|++... +..++.. |.
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~ 148 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHR 148 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCc
Confidence 999999999998 89999999999999999999999999999999 8999999999999999998854 4444433 37
Q ss_pred CCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEE
Q 001367 886 KRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 962 (1091)
Q Consensus 886 ~~V~~l~~spd--g~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd 962 (1091)
+-|.|+.|+|+ ..+|+++|.|++|++||+.+ .+....+.||.. .++.+++||||.++++ +.||.+.+||
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEE
Confidence 89999999998 78999999999999999998 445666777766 8999999999999999 6899999999
Q ss_pred cCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCC
Q 001367 963 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1042 (1091)
Q Consensus 963 ~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1042 (1091)
+..++++.. .+|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+.+...-+ ......+.++.++|++ ||
T Consensus 221 L~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 221 LNEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred ccCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence 999999765 3578999999999998777765 45679999999999887776544333 1234567789999999 69
Q ss_pred CeEEEEecCCcEEEEecC
Q 001367 1043 TQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1043 ~~l~~g~~dg~v~~w~~~ 1060 (1091)
+.|++|..|+.|++|.+.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 999999999999999984
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.4e-36 Score=322.26 Aligned_cols=277 Identities=17% Similarity=0.272 Sum_probs=241.7
Q ss_pred cCCCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceee---eceeEE---------eccccccc
Q 001367 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVW---------DIGACSML 386 (1091)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~---~~~~~~---------~~~~~~~~ 386 (1091)
...+|.-|..+...-...++|+.||+|+. ++|.|..|..|++|.+...++... ..+..- ++......
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 56788889888887777999999999998 889999999999999985332110 000000 11111122
Q ss_pred eeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCc
Q 001367 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1091)
Q Consensus 387 ~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~ 466 (1091)
.....+.||+++|..+.|+|+.++|++|+.|++|++|.+.+..++- ...||..||+++.|+|-|- +++|++.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3344588999999999999999999999999999999999976554 5779999999999999998 8999999999
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEE
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 546 (1091)
.++|......+++.+.+|-+.|.|+.|+|+ ..++++||.|.+|++||+.++..+..+.+|.++|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCc--ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 999999999999999999999999999774 569999999999999999999999999999999999999999999999
Q ss_pred EecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001367 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1091)
++. ++.|.+||+.+++.+..+.+|. +.|.++.|+.+|..|++|+.|.+|++||+..-
T Consensus 595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 976 7779999999999999999997 99999999999999999999999999998753
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-34 Score=300.65 Aligned_cols=476 Identities=14% Similarity=0.219 Sum_probs=350.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+..++..|.++.|+|...+++++-..|.|.|||.++...++ .+.-..-||.+..|-+--+ ++++|+.|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44588999999999999999999999999999999987776 5556777999999998777 899999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC-CceeeecCCCCcEEEEEEcC-CCCEEEEEec
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~ 549 (1091)
..+++.++.|..|..-|.+++.+|.. .++++++.|-+|++||++.. .+..++.+|.+-|++++|.| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999998764 69999999999999999875 45668999999999999999 5678888887
Q ss_pred CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
+++|.+|.+.+..+..++.+|. ..|+|+.+-+- ..++++|++|.+++|||..+..+++++.+|.+ .|..
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~ 232 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF 232 (794)
T ss_pred ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence 6779999999999999999998 89999999764 47999999999999999999999999998866 6899
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
++|+|.-..+++|+.||+++||+..+-+....+...-+.++|++..+....+++|.+. |
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~De---------------------g 291 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDE---------------------G 291 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccC---------------------C
Confidence 9999999999999999999999999988888888888899999875554444444333 3
Q ss_pred ccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC-ceEEEeecCCcccccccceeeccCCccccCCC
Q 001367 708 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 786 (1091)
Q Consensus 708 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1091)
.+.+ .+. .....+..++.|+.+-+.... -.+.+-.+... .++..
T Consensus 292 ~i~v-~lg------------------reeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~----------------~ev~D 336 (794)
T KOG0276|consen 292 SVTV-KLG------------------REEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQ----------------KEVTD 336 (794)
T ss_pred cEEE-Ecc------------------CCCCceeecCCccEEEEcCceeeeeeceeccCc----------------ccccC
Confidence 3221 111 011123333444332222211 00111000000 02233
Q ss_pred CCceeeecCCCCC-CCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001367 787 GPQFMVNDTTDSN-SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 865 (1091)
Q Consensus 787 ~~~~~~~~~~~~~-~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg 865 (1091)
|+.+ ....++-+ -.-....++.||+|+++++++||.-.||..-..+ ....+......|++ |....|+-..++
T Consensus 337 gErL-~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRes~~ 409 (794)
T KOG0276|consen 337 GERL-PLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRESNG 409 (794)
T ss_pred Cccc-cchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEecCC
Confidence 3311 11111101 1123346788999999999999998888633221 12445667788999 766677777788
Q ss_pred eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcC
Q 001367 866 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 945 (1091)
Q Consensus 866 ~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~ 945 (1091)
.|+++ .+.+....+...-. +-.+ -.|.+|...+ ++.+++||-++++. ++..+- ....+.|+.
T Consensus 410 ~vki~--knfke~ksi~~~~~---~e~i-~gg~Llg~~s-s~~~~fydW~~~~l-----VrrI~v------~~k~v~w~d 471 (794)
T KOG0276|consen 410 NVKIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGVRS-SDFLCFYDWESGEL-----VRRIEV------TSKHVYWSD 471 (794)
T ss_pred ceEEE--ecceeccccccccc---eeee-cCCceEEEEe-CCeEEEEEcccceE-----EEEEee------ccceeEEec
Confidence 89988 55665555432111 1111 1345555544 55699999998653 333322 234799999
Q ss_pred CCCEEEEEecCeEEEEEcC
Q 001367 946 DQTRFLLVHETHLAIYEAE 964 (1091)
Q Consensus 946 dg~~la~~~d~~i~vwd~~ 964 (1091)
+|.+++.+.|...+++...
T Consensus 472 ~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 472 NGELVAIAGDDSFYILKFN 490 (794)
T ss_pred CCCEEEEEecCceeEEEec
Confidence 9999999888876666544
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-34 Score=308.40 Aligned_cols=582 Identities=16% Similarity=0.225 Sum_probs=394.6
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
+...+..|..++|+|... .+.++-..|.|.+||.+-|.++.. +.+|.++|..++|+|++.
T Consensus 5 fEskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qp 64 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQP 64 (1202)
T ss_pred hhcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCC
Confidence 344566899999999998 557778889999999999998876 788999999999999999
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
++++|+.|..|+||+..+.+++. ++.||-+.|..+.|++.-. +++++|.|.+|+||++.+++++..+.||..-|.
T Consensus 65 lFVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred eEEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence 99999999999999999987665 7889999999999999777 899999999999999999999999999999999
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1091)
|..|+|..| .++|+|.|.+|++||+...+......+ ++.-...+..+. .-++--...-...
T Consensus 140 cAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 140 CAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKH 200 (1202)
T ss_pred eeccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeee
Confidence 999998765 899999999999999875443332211 000001111110 0011111122345
Q ss_pred EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEE
Q 001367 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1091)
Q Consensus 570 ~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1091)
.+.||. ..|+-++|+|.-..+++|++|..|++|.+..-+.-..-...++...|.++.|+|...++++.+.|++|++|
T Consensus 201 VLEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 201 VLEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 678887 89999999999999999999999999999876655444444556689999999999999999999999999
Q ss_pred ECCCCCeecccccccccceeeeeccccccccccccCCccc------CCCCCCCCCcccccccccccccccccccCCcccc
Q 001367 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS------NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 723 (1091)
Q Consensus 650 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~------~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~ 723 (1091)
|+.....++.++...+..+.++.+|.....++|-+.|.+- .....-.++.+.-.- |..|+.+|+.+.......
T Consensus 278 Dm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~ 356 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVA 356 (1202)
T ss_pred ecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeE
Confidence 9999999999999999999999999999999888877431 111122233333222 678888888765554444
Q ss_pred eeecCCccccccEEEEEEecCCCeEEEee--cCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCC
Q 001367 724 SLLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 801 (1091)
Q Consensus 724 ~~~~~~~~~~~~i~~~~~s~dg~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1091)
.++.+.. ...++.++.++|....++.++ .+|...++.++....... +.... -..
T Consensus 357 ~lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~------------~~~~~-----------~k~ 412 (1202)
T KOG0292|consen 357 SLRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVS------------DGKDV-----------KKG 412 (1202)
T ss_pred eccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccC------------Cchhh-----------hcC
Confidence 4443321 345778899999877666554 356777766654311000 00000 011
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee
Q 001367 802 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 881 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l 881 (1091)
....++-++.++-.+..-++..+.+-++.. +..+.+..+ ..+..+-+.- .|.+|+. ....|.+||++..+.+..+
T Consensus 413 tG~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si 487 (1202)
T KOG0292|consen 413 TGEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSI 487 (1202)
T ss_pred CCCceEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEE
Confidence 122222222222212222234444444432 222333222 2344455554 5655553 3457999999988877776
Q ss_pred ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEE
Q 001367 882 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 961 (1091)
Q Consensus 882 ~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vw 961 (1091)
. ...|.-+.||+|..++|--+. .+|.|.+.+-. .+...... -+|.+-+|..+|-+|.+..+.-= |
T Consensus 488 ~--~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL~------l~~sihEt----iriksgawde~gVfiYtT~nHik--Y 552 (1202)
T KOG0292|consen 488 K--VSKVKYVVWSNDMSRVALLSK-HTITIADKKLE------LLCSIHET----IRIKSGAWDEDGVFIYTTLNHIK--Y 552 (1202)
T ss_pred e--cCceeEEEEcCccchhhhccc-ceEEEEecchh------heecchhe----eEeeeceeccCceEEEEehhhhh--h
Confidence 5 467899999999988876654 56888876531 12222111 14677788888887776432210 1
Q ss_pred EcCCcc--eeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 962 EAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 962 d~~~~~--~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
-+.+|. .++++ ..++.- +--.|..++.-..|+.+.+.+++.-
T Consensus 553 al~~GD~GIikTL----d~~iyi--tkv~gn~V~cl~rd~~~~~~~IDpt 596 (1202)
T KOG0292|consen 553 ALENGDSGIIKTL----DKPIYI--TKVKGNKVFCLNRDGEIECLTIDPT 596 (1202)
T ss_pred hhccCCcceEEec----ccceEE--EEeeCCEEEEEecCCCeEEEeechH
Confidence 111111 11110 112211 1224667777777888888777654
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-36 Score=294.99 Aligned_cols=292 Identities=22% Similarity=0.330 Sum_probs=268.0
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+.+.+.||...|+.+-|+|+-. ++++++.|++|++||..+|++... +.||...|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 56678899999999999999996 889999999999999999998765 8899999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
+..|++||+++.|-.+++||.++. .+....+.+|...|.+++|-|.|. ++++++.|.+|+.|++.+|.++.+|.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999873 233335779999999999999998 8999999999999999999999999999
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCC---------------CEEEEEec
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------------RRLFSCGT 549 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~---------------~~l~~~~~ 549 (1091)
...|..+.. ..||.++++++.|.++++|-+.+......+..|..++.+++|.|.. +++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999998887 6789999999999999999999999999999999999999997642 35666654
Q ss_pred CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEE
Q 001367 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
|++|++||+.++.++.++.+|. +.|..++|+|.|++|+++.+|+++++||+++++++..+..+.+ .++++.
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD 383 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD 383 (406)
T ss_pred ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence 7789999999999999999998 9999999999999999999999999999999999999998877 589999
Q ss_pred EccCCCEEEEEECCCeEEEEEC
Q 001367 630 FNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
|+.+..++++|+-|.++++|..
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999974
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.1e-35 Score=289.45 Aligned_cols=335 Identities=15% Similarity=0.186 Sum_probs=290.1
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..+.++..|++.|.+++.+|+.+ ++|||+.|....||+..+|+.... +.+|+..|+++.|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~F 114 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCSF 114 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEEE
Confidence 45678899999999999999776 899999999999999999997765 8899999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
|.||.+||+|+.+|.|+||+..++.... .+.+....+.-+.|+|-+. .|+.|+.||.+-+|.+.++...+.+.||
T Consensus 115 shdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh 189 (399)
T KOG0296|consen 115 SHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGH 189 (399)
T ss_pred ccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCC
Confidence 9999999999999999999999987554 4545667788999999888 8999999999999999998888999999
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC-CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
..++++=.|. ++|+.++++..||+|++||+.+..+...+... .....++.++.++..++.|.. ++.+++-+..
T Consensus 190 ~~~ct~G~f~--pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~~ 263 (399)
T KOG0296|consen 190 NSPCTCGEFI--PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNNG 263 (399)
T ss_pred CCCccccccc--CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEccc
Confidence 9999999995 46899999999999999999999988877643 346778889999998888865 5668888888
Q ss_pred CceeeEEEec--------ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC
Q 001367 564 EGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1091)
Q Consensus 564 ~~~~~~~~~~--------~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1091)
+|+.+....+ +......|.++.++..-+..++|+-||+|.|||+...++........ .|..+.|-+ ..
T Consensus 264 sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~---~V~~l~w~~-t~ 339 (399)
T KOG0296|consen 264 SGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED---GVTKLKWLN-TD 339 (399)
T ss_pred cceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC---ceEEEEEcC-cc
Confidence 8888777663 22122345555566666788899999999999999888877776554 489999998 78
Q ss_pred EEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 636 LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|++++.+|.|+.||.++++......+|...|.++++ +|+.+++++++.|++.++|+..
T Consensus 340 ~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l---------------------s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 340 YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL---------------------SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeeccCceEEeeeccccceEEEEecCchheeEEEE---------------------cCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999999999998 7889999999999999998753
No 33
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.2e-32 Score=278.48 Aligned_cols=535 Identities=12% Similarity=0.158 Sum_probs=382.0
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
+-..-++|+. -=..+-+-|.|..+...+ +-+.+++++...+.. +.||+..|.|++.
T Consensus 57 ewvygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~v 112 (626)
T KOG2106|consen 57 EWVYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMAV 112 (626)
T ss_pred EEEEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEee
Confidence 3344456664 334466778887443333 456677775532221 6789999999999
Q ss_pred CCCCCEEEEEECCC--------EEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEEEeCCC
Q 001367 405 SPDGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 405 spdg~~las~~~d~--------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
+||.-.+|+|-..| .+++||..+-..+. .+......|.+++||+- |..+..+--+.+..+.|||...
T Consensus 113 HPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk 189 (626)
T KOG2106|consen 113 HPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQK 189 (626)
T ss_pred cCCceeeccCcccccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchh
Confidence 99999999874433 59999977654333 55566678999999985 3422333445677899999999
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee---ecC-CCCcEEEEEEcCCCCEEEEEecC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDA-PGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~-~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
+......+..+..|....|+|... -++.....|.+.+|+++.+..... +.. ...-|.|++|.++|..+- +
T Consensus 190 ~~~~~~vk~sne~v~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g--- 263 (626)
T KOG2106|consen 190 KAKLGPVKTSNEVVFLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G--- 263 (626)
T ss_pred hhccCcceeccceEEEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e---
Confidence 988888887888889999988743 344445568899999887665442 222 225799999999998653 3
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
|.++.|.||+..+.+..+....|. +.|.+++...+|. |++|+.|+.|..|| ..-+.++..+.+.....+..++-
T Consensus 264 -DS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e 337 (626)
T KOG2106|consen 264 -DSGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAE 337 (626)
T ss_pred -cCCceEEEEeCCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEec
Confidence 347789999998887777766665 9999999998886 55599999999999 55556666666555556666654
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
...+ |++|+..+.|..=.++++..+
T Consensus 338 ~~~d--i~vGTtrN~iL~Gt~~~~f~~----------------------------------------------------- 362 (626)
T KOG2106|consen 338 GKGD--ILVGTTRNFILQGTLENGFTL----------------------------------------------------- 362 (626)
T ss_pred CCCc--EEEeeccceEEEeeecCCceE-----------------------------------------------------
Confidence 4322 677766555543333322111
Q ss_pred cccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCce
Q 001367 711 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 790 (1091)
Q Consensus 711 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1091)
...+|......++..|+...+++++.|+.+++|+ ..+ -.|...
T Consensus 363 -----------------~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-------------~~wt~~----- 405 (626)
T KOG2106|consen 363 -----------------TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-------------LEWTKI----- 405 (626)
T ss_pred -----------------EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-------------eeEEEE-----
Confidence 0123566777888889988999999999999998 111 112211
Q ss_pred eeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001367 791 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 869 (1091)
Q Consensus 791 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~i 869 (1091)
...++.|+.|+|.| .+|.|. .|...+.|.++...+..-. ...++++++|+| +|.+||+|+.|+.|+|
T Consensus 406 ---------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 406 ---------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYI 473 (626)
T ss_pred ---------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeEEE
Confidence 35678899999999 888887 7999999999965555444 488999999999 9999999999999999
Q ss_pred EeccCcc-eeeeec-cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee--------------eeccCCCcC
Q 001367 870 YNARSSE-VISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS--------------LQTPDGVMT 933 (1091)
Q Consensus 870 wd~~~~~-~~~~l~-~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~--------------~~~~~~~~~ 933 (1091)
|.+.... ...... .|..+|+.+.||+|+++|.+-+.|-.|-.|.-.. +..... +....+..
T Consensus 474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~--~~~~ts~kDvkW~t~~c~lGF~v~g~s~- 550 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE--CKQITSVKDVKWATYTCTLGFEVFGGSD- 550 (626)
T ss_pred EEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc--CcccceecceeeeeeEEEEEEEEecccC-
Confidence 9987643 332222 2347999999999999999999999999993322 211111 11111111
Q ss_pred CCCCceEEEEcCCCCEEEEEe-cCeEEEEEcC--CcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeC
Q 001367 934 LAPSETHIQFHKDQTRFLLVH-ETHLAIYEAE--ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 934 ~~~~i~~l~fs~dg~~la~~~-d~~i~vwd~~--~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~ 1006 (1091)
...+..++-|.+.+++|++. .|+|++|... +.+.....+.+|++.|++++|+-+...+++.+.|.+|..|++
T Consensus 551 -~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 551 -GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred -CchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 13466777788889999975 4799999864 233334456789999999999999999998889999999986
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.9e-35 Score=286.68 Aligned_cols=301 Identities=18% Similarity=0.249 Sum_probs=269.1
Q ss_pred ccCCCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc
Q 001367 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1091)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1091)
.-+..|-.+.+++.||.+.|.|+++.|-.+ ++++|+.|++|+|||+.+|++..+ +.||-.
T Consensus 135 PeWHapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~ 194 (460)
T KOG0285|consen 135 PEWHAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIE 194 (460)
T ss_pred ccccCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhh
Confidence 335567788999999999999999999987 779999999999999999998876 889999
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1091)
.|..+++|+-..||.+++.|+.|+.||++..+.++ ...||-..|.+++..|.-. .|++|+.|.+++|||+++...
T Consensus 195 ~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 195 TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred eeeeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccce
Confidence 99999999999999999999999999999988777 5679999999999999888 899999999999999999999
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
+..+.||..+|.++.+.+. ...+++|+.|++|++||+..++....+..|...+.+++.+|....+++++.+ .|
T Consensus 270 V~~l~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----ni 342 (460)
T KOG0285|consen 270 VHVLSGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NI 342 (460)
T ss_pred EEEecCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----cc
Confidence 9999999999999998554 3579999999999999999999999999999999999999999999988753 49
Q ss_pred EEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe---CCC---CCCCCceEEEc
Q 001367 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFN 631 (1091)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s 631 (1091)
..|++..|..+..+.+|. ..|++++.+.|+ .+++|+++|.+.+||.++|...+... ..+ ....|.+.+|.
T Consensus 343 k~w~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 343 KQWKLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred eeccCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 999999999999988887 889999988764 78999999999999999886654442 222 22357899999
Q ss_pred cCCCEEEEEECCCeEEEEECCCC
Q 001367 632 KNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
..|..|+++..|.+|++|.-...
T Consensus 419 ktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 419 KTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ccCceEEeccCCcceEEEecccc
Confidence 99999999999999999986543
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.1e-34 Score=279.19 Aligned_cols=339 Identities=18% Similarity=0.230 Sum_probs=286.9
Q ss_pred EEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEe
Q 001367 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1091)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1091)
.|..|+..|.+++.+|+.+ +++||+.|....+|++.+|..+..+.+|...|.++.| +.+|.+|++|+.+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F--shdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF--SHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE--ccCceEEEecCCCccEEEEE
Confidence 6789999999999999777 8999999999999999999999999999999999999 55889999999999999999
Q ss_pred cCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE
Q 001367 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1091)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 595 (1091)
..++.....+......+.-+.|+|.+..|++|+. ++.+.+|.+.++...+.+.||. .++++-.|.|+|+.+++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence 9999999998878888999999999999999876 6679999999988889999988 89999999999999999
Q ss_pred EeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccc
Q 001367 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
+..||+|++||..+++++..+....+ ....++.++..+..++.|..++.+++-+..+++.+....+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence 99999999999999999999876554 3568899999999999999999888877665543322110
Q ss_pred cccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCc
Q 001367 676 STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 755 (1091)
Q Consensus 676 ~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg 755 (1091)
.+..+....
T Consensus 274 --------------------------------------------------------------------~~~~l~~~~--- 282 (399)
T KOG0296|consen 274 --------------------------------------------------------------------TVPELKPSQ--- 282 (399)
T ss_pred --------------------------------------------------------------------CCccccccc---
Confidence 000000000
Q ss_pred eEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCcee
Q 001367 756 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT 834 (1091)
Q Consensus 756 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~ 834 (1091)
......|..+.++..-.+.|+|+ ||+|.|||+.+.+.
T Consensus 283 ------------------------------------------e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~ 320 (399)
T KOG0296|consen 283 ------------------------------------------EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL 320 (399)
T ss_pred ------------------------------------------hhhhhhhhhcccccccchhhcccccceEEEEecccchh
Confidence 00122334444555556777787 89999999988776
Q ss_pred EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q 001367 835 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 914 (1091)
Q Consensus 835 ~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~ 914 (1091)
...+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||...|.+++++|++++++|+|.|++.+|+++
T Consensus 321 R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 321 RHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred heecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 66655 788899999987 468889999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 001367 915 D 915 (1091)
Q Consensus 915 ~ 915 (1091)
.
T Consensus 398 ~ 398 (399)
T KOG0296|consen 398 P 398 (399)
T ss_pred C
Confidence 4
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.6e-34 Score=263.17 Aligned_cols=295 Identities=17% Similarity=0.248 Sum_probs=251.7
Q ss_pred eEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce--eeEEEeccccc
Q 001367 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ 577 (1091)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 577 (1091)
-+|++++.|.+|++|...++.+..++....+.|..+.+.||++.|++++ ...|++||++++. ++..+.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~-- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT-- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence 4799999999999999999999999999999999999999999999987 4569999999875 588899987
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCee
Q 001367 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1091)
Q Consensus 578 ~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1091)
..|.++.|..+|+++++||+||+++|||++.....+.+... .+|+++..+|+...|+++..+|.|++||+.+....
T Consensus 84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 89999999999999999999999999999996666666543 57999999999999999999999999999866333
Q ss_pred cccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEE
Q 001367 658 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS 737 (1091)
Q Consensus 658 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~ 737 (1091)
..+- |. ....|.
T Consensus 160 ~~li------------------------------------------------------------------Pe--~~~~i~ 171 (311)
T KOG0315|consen 160 HELI------------------------------------------------------------------PE--DDTSIQ 171 (311)
T ss_pred cccC------------------------------------------------------------------CC--CCccee
Confidence 2211 11 235788
Q ss_pred EEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEE
Q 001367 738 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 817 (1091)
Q Consensus 738 ~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 817 (1091)
++++.|||..++++...|..++|++..... .+.. ... .+...|...+....+|||+++||
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l-~P~--~k~~ah~~~il~C~lSPd~k~la 231 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASEL-EPV--HKFQAHNGHILRCLLSPDVKYLA 231 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccc-eEh--hheecccceEEEEEECCCCcEEE
Confidence 999999999999999999999999865211 0000 001 11224889999999999999999
Q ss_pred EEe-CCeEEEEEccCc-eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEEC
Q 001367 818 SAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 894 (1091)
Q Consensus 818 ~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s 894 (1091)
+++ |.+++||+.++. +....+.+|...+..++||. |++||++|+.|+.+++|++..++.+....+|..+..|++..
T Consensus 232 t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 998 899999999988 66677889999999999999 99999999999999999999999999999999988888764
No 37
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=4.1e-32 Score=276.48 Aligned_cols=533 Identities=12% Similarity=0.127 Sum_probs=385.3
Q ss_pred EEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCC------
Q 001367 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG------ 509 (1091)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------ 509 (1091)
.++|+.-. ..+-+.|.|.-++++. +.+.+++.+.. ..+-+.+|+..|.+++++|+. ..+++|-..|
T Consensus 61 gYRG~dcR-~Nly~lptgE~vyfvA----~V~Vl~n~ee~-~Qr~y~GH~ddikc~~vHPdr--i~vatGQ~ag~~g~~~ 132 (626)
T KOG2106|consen 61 GYRGVDCR-NNLYLLPTGELVYFVA----AVGVLYNWEER-SQRHYLGHNDDIKCMAVHPDR--IRVATGQGAGTSGRPL 132 (626)
T ss_pred eecceeee-ceeEEccCccEEEEec----cEEEEEeehhh-hcccccCCCCceEEEeecCCc--eeeccCcccccCCCcC
Confidence 34444433 3466788887432222 24566666442 234566899999999997743 4566554444
Q ss_pred --eEEEEecCCCCceeeecCCCCcEEEEEEcCC--CCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEE
Q 001367 510 --KIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1091)
Q Consensus 510 --~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~ 585 (1091)
.+++||-.+...+..+......|.+++|++- |..+...- ...+..+.+||.+.+.......... ..|..+.
T Consensus 133 ~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD--~s~~h~lSVWdWqk~~~~~~vk~sn---e~v~~a~ 207 (626)
T KOG2106|consen 133 QPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD--DSNPHMLSVWDWQKKAKLGPVKTSN---EVVFLAT 207 (626)
T ss_pred CCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec--CCCccccchhhchhhhccCcceecc---ceEEEEE
Confidence 4999998888888888877789999999983 44444442 2346779999998887766666544 6788999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeEEEE---eCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccccc
Q 001367 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTI---DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 586 ~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~---~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
|+|.+..+++....+.+.+|+.+++.+.+.. ..+.. ..|.+++|.++|. +++|..+|.|.||+..+.+..+....
T Consensus 208 FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~a 285 (626)
T KOG2106|consen 208 FHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHA 285 (626)
T ss_pred eccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeee
Confidence 9999998988888999999999998766543 33333 5799999999886 78999999999999988888777779
Q ss_pred ccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEe
Q 001367 663 LSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 742 (1091)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 742 (1091)
|.+.|.++.. ..+|.++ +|+.|..|..||-+ -...+.+.+|+ ..+.|+.++-.
T Consensus 286 H~ggv~~L~~---------------------lr~Gtll-SGgKDRki~~Wd~~---y~k~r~~elPe--~~G~iRtv~e~ 338 (626)
T KOG2106|consen 286 HDGGVFSLCM---------------------LRDGTLL-SGGKDRKIILWDDN---YRKLRETELPE--QFGPIRTVAEG 338 (626)
T ss_pred cCCceEEEEE---------------------ecCccEe-ecCccceEEecccc---ccccccccCch--hcCCeeEEecC
Confidence 9999999887 4555544 49999999999933 23334445555 56677666644
Q ss_pred cCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-C
Q 001367 743 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G 821 (1091)
Q Consensus 743 ~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d 821 (1091)
..+ ++.+...+.|..=.+. .+..+. ..+|......++.+|+...+++++ |
T Consensus 339 ~~d--i~vGTtrN~iL~Gt~~----------------------~~f~~~-----v~gh~delwgla~hps~~q~~T~gqd 389 (626)
T KOG2106|consen 339 KGD--ILVGTTRNFILQGTLE----------------------NGFTLT-----VQGHGDELWGLATHPSKNQLLTCGQD 389 (626)
T ss_pred CCc--EEEeeccceEEEeeec----------------------CCceEE-----EEecccceeeEEcCCChhheeeccCc
Confidence 333 6666655554432211 111111 125888999999999999999888 8
Q ss_pred CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEE
Q 001367 822 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 901 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~la 901 (1091)
+.+++|+ ..++..+.. ...++.|+.|+| .| .+|.|+..|...+.|.++...+..-.. ..++++++|+|+|.+||
T Consensus 390 k~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lA 463 (626)
T KOG2106|consen 390 KHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLA 463 (626)
T ss_pred ceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEE
Confidence 9999999 444444433 456789999999 77 999999999999999999666655554 88999999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeee---------
Q 001367 902 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ--------- 971 (1091)
Q Consensus 902 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~--------- 971 (1091)
.|+.|+.|+||.++.+..... .+....+ .+|+.+.||+|+++|.+ +.|-.|..|....-+.+..
T Consensus 464 vgs~d~~iyiy~Vs~~g~~y~-r~~k~~g-----s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~ 537 (626)
T KOG2106|consen 464 VGSHDNHIYIYRVSANGRKYS-RVGKCSG-----SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATY 537 (626)
T ss_pred EecCCCeEEEEEECCCCcEEE-EeeeecC-----ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeee
Confidence 999999999999987553321 2222333 37999999999999999 7788899994332222111
Q ss_pred --------eecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCC
Q 001367 972 --------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1043 (1091)
Q Consensus 972 --------~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1043 (1091)
+...|...|..++-+.+.+++|+|...|+|++|..+.-...+.+ +....|+..|.+ ++|.-. ..
T Consensus 538 ~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~-----he~~ghs~~vt~--V~Fl~~-d~ 609 (626)
T KOG2106|consen 538 TCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS-----HEYGGHSSHVTN--VAFLCK-DS 609 (626)
T ss_pred EEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc-----eeeccccceeEE--EEEeeC-Cc
Confidence 11234666777778888999999999999999998866554322 222335666774 555553 46
Q ss_pred eEEEEecCCcEEEEec
Q 001367 1044 QFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1044 ~l~~g~~dg~v~~w~~ 1059 (1091)
.|++.++|.+|..|++
T Consensus 610 ~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 610 HLISTGKDTSIMQWRL 625 (626)
T ss_pred eEEecCCCceEEEEEe
Confidence 6777679999999997
No 38
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7e-34 Score=287.59 Aligned_cols=279 Identities=20% Similarity=0.318 Sum_probs=252.3
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..|++++|+.+|. +||+|+.||.++||+.. |.++.+ +..|.++|.++.|+.+|.||+++
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~-G~l~~t-------------------l~~HkgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKD-GNLIST-------------------LGQHKGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecC-chhhhh-------------------hhccCCceEEEEEcCCCCEEEec
Confidence 4899999999998 88999999999999965 444443 67799999999999999999999
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1091)
+.|+++.+||..+|.... .+.-|..+-.++.|-.+.. +++++.|+.|+|+.+...+++.++.+|.++|.++.|.
T Consensus 295 ~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred cCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 999999999999987554 4566888878899987775 8999999999999999999999999999999999995
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCC---------EEEEEecCCCCceEEEEEecCCc
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR---------RLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~---------~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
+ .+.+|++++.|++++||+.........+..|...|..+.|+|.|. .+++++. +++|++||+..+
T Consensus 369 ~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~g 442 (524)
T KOG0273|consen 369 P--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESG 442 (524)
T ss_pred C--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCC
Confidence 4 568999999999999999999999999999999999999999653 5677765 778999999999
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCe
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1091)
.++..|..|. .+|.+++|+|+|.++++|+.||.|.+|+.++++..+.....+. |..++|+.+|..|..+..|+.
T Consensus 443 v~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~---Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 443 VPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG---IFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred ceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe---EEEEEEcCCCCEEEEEecCCC
Confidence 9999999888 8999999999999999999999999999999999999876654 899999999999999999999
Q ss_pred EEEEECC
Q 001367 646 IKILETP 652 (1091)
Q Consensus 646 i~iwd~~ 652 (1091)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998864
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9e-34 Score=270.82 Aligned_cols=291 Identities=19% Similarity=0.248 Sum_probs=252.1
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
..+.||.++|..+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|+++|..+.|.+|
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRD 101 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccC
Confidence 45789999999999999998 78999999999999975432221 127799999999999999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
+..|++++.|.+|+.||.++|+..+ .+++|..-|+.+.-+.-|.+ ++.+++.|+++++||+++..+++++. ....
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence 9999999999999999999998776 67899999999996655665 78899999999999999999988875 4567
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC---
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--- 564 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--- 564 (1091)
++++.| ...+..+++|+-|+.|++||++.......+.+|..+|+.+..+++|.++.+.+. +..+++||++.
T Consensus 177 ltAv~f--~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 177 LTAVGF--KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEEe--cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence 888888 445678999999999999999999999999999999999999999999998876 77899999874
Q ss_pred -ceeeEEEecccc-cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 565 -GAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 565 -~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
..++..+.++.. .......++|+|++..+-+|+.|..+++||......+..+++|.+ .|+++.|+|....|.+++.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEecc
Confidence 345778887651 112345678999999999999999999999999899999887765 7999999999999999999
Q ss_pred CCeEEEEE
Q 001367 643 ENRIKILE 650 (1091)
Q Consensus 643 dg~i~iwd 650 (1091)
|.+|++=+
T Consensus 329 dk~i~lge 336 (338)
T KOG0265|consen 329 DKTIYLGE 336 (338)
T ss_pred CceeEeec
Confidence 99998743
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.9e-33 Score=261.91 Aligned_cols=292 Identities=22% Similarity=0.336 Sum_probs=239.7
Q ss_pred eeeecccCCCCcEEEEEcCC-CceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 326 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspd-g~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..+++.+|++.|+.++|+|- |. +||+|+.|+.|+||+...+.-... +..+-.+|+..|.++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 46789999999999999999 86 899999999999999886433221 12224579999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC---ceeEEe
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF 481 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~ 481 (1091)
+|.|++||+++.|.++.||.-..++ ......+.||...|.+++|+++|. +|++++.|+.|-||.+..+ ++...+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 9999999999999999999877654 555668999999999999999999 8999999999999998754 567888
Q ss_pred cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC---CceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
+.|...|..+.|+|+.+ +|++++.|.+|++|+-... .....+..+...+.+++|++.|..|++++. +++++
T Consensus 147 ~~HtqDVK~V~WHPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 99999999999998764 9999999999999977632 346688889889999999999999999976 77799
Q ss_pred EEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------eEEEEeCCCCCCCCceEEEcc
Q 001367 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
||-..+ .+.+ .|...+..+.|. ...|++++.|+.|++|.-...- .+... .+.+...|+++.|+|
T Consensus 221 Iw~~~~-----~~~~--~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 221 IWRLYT-----DLSG--MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNP 290 (312)
T ss_pred eeeecc-----Ccch--hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcC
Confidence 997542 1222 124788889998 5679999999999999765421 11111 122234799999999
Q ss_pred C-CCEEEEEECCCeEEEEECC
Q 001367 633 N-GTLLAVIANENRIKILETP 652 (1091)
Q Consensus 633 ~-~~~l~~~~~dg~i~iwd~~ 652 (1091)
. .++|+++++||.+++|.+.
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 4 7899999999999999864
No 41
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.4e-30 Score=271.45 Aligned_cols=550 Identities=12% Similarity=0.120 Sum_probs=388.1
Q ss_pred CccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccc-cCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
-..|+++|||.+.+.||.+-.+|.|.||++..+=... ..+.++. ..|.+++|++.++ |++.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 3689999999999999999999999999999864333 3556654 4899999997665 89999999999999999
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee--ecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
++.+..+....+.|++++.++.. ..++.|+.||.+..++...+..... +.-..+.+.+++|+|++..++.|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 99999999999999999997655 5899999999877777776665553 3445578999999999999999986
Q ss_pred CceEEEEEecCCceeeEEEe----ccc-ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 553 GESFLVEWNESEGAIKRTYQ----GLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~----~~~-~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
++.|++||..++..+.... +.. ....-|.++.|-.+ ..+++|...|+|.+||...+.+++.+..+.. .|.+
T Consensus 175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~ 250 (691)
T KOG2048|consen 175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLA 250 (691)
T ss_pred -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeE
Confidence 7789999999998776222 111 11245778888755 5789999999999999999999999888765 7999
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
++..+++.++++++.|+.|.-|...++..-
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------------------------------------------- 280 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------------------------------------------- 280 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc--------------------------------------------------
Confidence 999999999999999999988876654220
Q ss_pred ccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCC
Q 001367 708 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 787 (1091)
Q Consensus 708 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1091)
|-. ......|...|.+++..++ .+++++.|..+.+-.....+ ..+-
T Consensus 281 ----wv~-----------~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~--------------~~~h--- 326 (691)
T KOG2048|consen 281 ----WVI-----------NSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK--------------NMDH--- 326 (691)
T ss_pred ----eee-----------eccccCCcccceeeeeecc--eEEecceeeEEEEccccccC--------------chhh---
Confidence 100 0011236778888888877 68888888888763321100 0000
Q ss_pred CceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCcee---------EEEecCCCCCeEEEEEcCCCCcEE
Q 001367 788 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVI 858 (1091)
Q Consensus 788 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~~~~~l 858 (1091)
.+.... ..-.-+...|..++++.-....+.+|.+.+... .+-.......|.+.+.|| +|++|
T Consensus 327 --~~~~~~------p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~I 397 (691)
T KOG2048|consen 327 --RQKNLF------PASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLI 397 (691)
T ss_pred --hccccc------cccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEE
Confidence 000000 001123455666777777788889998876522 122233456799999999 99999
Q ss_pred EEEeCCCeEEEEeccCccee-----eeeccccCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeccCCCc
Q 001367 859 AIGMDDSTILIYNARSSEVI-----SKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVM 932 (1091)
Q Consensus 859 a~g~~dg~i~iwd~~~~~~~-----~~l~~h~~~V~~l~~spdg~~las~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 932 (1091)
+.+. -..++||.+.....+ .......-.+..+.|+-|++.++.++ .+..+.+.++++...+....++..
T Consensus 398 a~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~---- 472 (691)
T KOG2048|consen 398 AIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ---- 472 (691)
T ss_pred EEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc----
Confidence 9876 446888887652221 11222334577889999998888888 778888888887554332222222
Q ss_pred CCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEee-CCCEEEEEEcCCcEEEEeCCCCc
Q 001367 933 TLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 933 ~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~-dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
.....|..+..||||++||+ +..+.|.+|++++++.-.... .-+..|+.++|+| +...|+.+..|+.|.-+|++..+
T Consensus 473 ~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 473 AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccCcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 12247999999999999999 788999999999877544321 2257899999995 55678889999999999995543
Q ss_pred eEEEeeccc--ccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecC
Q 001367 1011 VQCRILSTA--YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1011 ~~~~~~~~~--~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
. .++.... .+|.....-.-...-+.|+|. ....+...+.+-+++.|..
T Consensus 552 l-~~ws~~nt~nlpk~~~~l~~~~~gisfd~~-n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 552 L-TRWSKNNTRNLPKEPKTLIPGIPGISFDPK-NSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred h-hhhhhccccccccChhhcCCCCceEEeCCC-CccEEEEEcCcEEEEEecC
Confidence 2 2222100 111110000001123567774 4445555666677777764
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-31 Score=290.32 Aligned_cols=497 Identities=16% Similarity=0.201 Sum_probs=347.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+...+..|..++|+|...+++++-..|.|++||..-+.++. .+.+|.++|..++|+|++. ++++||.|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44467889999999999999999999999999999988776 6889999999999999998 999999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
..+.+++.++.||-.-|..+.|++. -.+++|+|.|.+|+||++.+.+++..+.+|.+-|+|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 9999999999999999999999764 369999999999999999999999999999999999999999999999987
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEE---EEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceE
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l---~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1091)
|.+|++||+..-+....-.+ ++.=...+... +-|+.|- -....+.+|.. .|+-+
T Consensus 156 --DQTVRVWDisGLRkk~~~pg---------~~e~~~~~~~~~~dLfg~~Da----------VVK~VLEGHDR--GVNwa 212 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPG---------SLEDQMRGQQGNSDLFGQTDA----------VVKHVLEGHDR--GVNWA 212 (1202)
T ss_pred --cceEEEEeecchhccCCCCC---------CchhhhhccccchhhcCCcCe----------eeeeeeccccc--ccceE
Confidence 66799999875432221111 00000111111 1122222 22344555544 79999
Q ss_pred EEccCCCEEEEEECCCeEEEEECCCCC--eecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccc
Q 001367 629 CFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAE 706 (1091)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d 706 (1091)
+|+|.-.++++|++|..|++|.+...+ .+.+.++|...|.++-| .|..+.++|.+.|
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlf---------------------hp~q~lIlSnsED 271 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLF---------------------HPHQDLILSNSED 271 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEe---------------------cCccceeEecCCC
Confidence 999999999999999999999998764 45678999999999999 6777889999999
Q ss_pred cccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCC
Q 001367 707 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 786 (1091)
Q Consensus 707 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1091)
++||+||+......++..- ...+...++..|..+. ++++.|+-+.||.+...
T Consensus 272 ksirVwDm~kRt~v~tfrr------endRFW~laahP~lNL-fAAgHDsGm~VFkleRE--------------------- 323 (1202)
T KOG0292|consen 272 KSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELNL-FAAGHDSGMIVFKLERE--------------------- 323 (1202)
T ss_pred ccEEEEecccccceeeeec------cCCeEEEEEecCCcce-eeeecCCceEEEEEccc---------------------
Confidence 9999999985544443332 4678889999999994 45555555666654321
Q ss_pred CCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeE--EEecCC---CCCeEEEEEcCCCCcEEEEE
Q 001367 787 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI--LTIMPP---SPTATSLAFNPHDNNVIAIG 861 (1091)
Q Consensus 787 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~--~~~~~~---~~~i~~l~~s~~~~~~la~g 861 (1091)
. .+.+++ +..|....+..|+-+|+.+.+.. ..++.. ..+..++.++|..+..+++.
T Consensus 324 ---------------r--pa~~v~--~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 324 ---------------R--PAYAVN--GNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred ---------------C--ceEEEc--CCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEe
Confidence 1 233443 34455555889999999875433 334433 36788999999655555554
Q ss_pred eCC-CeEEEEeccCcceeeeec---c-ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCC
Q 001367 862 MDD-STILIYNARSSEVISKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 936 (1091)
Q Consensus 862 ~~d-g~i~iwd~~~~~~~~~l~---~-h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 936 (1091)
..| |.-.++.+..... .... . ......++-.+. .++.+---.+..+.+-++.+.. .+.++.+.
T Consensus 385 ~~~n~~y~L~~ipk~~~-~~~~~~~~~k~tG~~a~fvar-Nrfavl~k~~~~v~ik~l~N~v---tkkl~~~~------- 452 (1202)
T KOG0292|consen 385 NLDNGEYELVQIPKDSD-GVSDGKDVKKGTGEGALFVAR-NRFAVLDKSNEQVVIKNLKNKV---TKKLLLPE------- 452 (1202)
T ss_pred ccCCCeEEEEEecCccc-ccCCchhhhcCCCCceEEEEe-cceEEEEecCcceEEecccchh---hhcccCcc-------
Confidence 444 4555555543211 0000 0 111222222222 2222222224556666665522 11122211
Q ss_pred CceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 937 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 937 ~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
....+-+.-+|.+|+ .+...|.+||+...+.+.++. -..|..+.||+|..+++--+. .+|.|.+
T Consensus 453 ~~~~IF~ag~g~lll-~~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~K-h~i~i~~ 516 (1202)
T KOG0292|consen 453 STDDIFYAGTGNLLL-RSPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLSK-HTITIAD 516 (1202)
T ss_pred cccceeeccCccEEE-EcCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhccc-ceEEEEe
Confidence 233455555555444 355678888888887777754 457888888888877665443 3455554
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.3e-33 Score=255.10 Aligned_cols=292 Identities=15% Similarity=0.215 Sum_probs=253.6
Q ss_pred CCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE
Q 001367 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1091)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1091)
.+|..-+++|..|.++|.++.|+-||+| ..+++.|.+|++|+...|.++++ ..+|...|.
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVl 63 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVL 63 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceee
Confidence 4677778899999999999999999994 57778899999999999999987 789999999
Q ss_pred EEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC--Ccee
Q 001367 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSRT 478 (1091)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--~~~~ 478 (1091)
.++.+.|...+++|+.|..|.+||+.+|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++ .+++
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence 99999999999999999999999999998776 7899999999999999998 999999999999999875 4678
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
+.+......|.++.+ .+..|++|+.||+++.||++.+.....+ -+.+|++++|++|++..++++. ++.++
T Consensus 139 Qildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlr 208 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLR 208 (307)
T ss_pred chhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceee
Confidence 888888889999987 3467999999999999999877655443 4568999999999999988876 67799
Q ss_pred EEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
+.|-.+|++++.+.+|......+ .++++....++++|++||.|++||+.....+..++.+.. ..+..++++|....++
T Consensus 209 LlDk~tGklL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFI 286 (307)
T ss_pred ecccchhHHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCcccee
Confidence 99999999999999998433333 346777788999999999999999999999999887765 3478999999887777
Q ss_pred EEECCCeEEEEE
Q 001367 639 VIANENRIKILE 650 (1091)
Q Consensus 639 ~~~~dg~i~iwd 650 (1091)
++... .+..|.
T Consensus 287 ~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 287 TATGH-GDLFWY 297 (307)
T ss_pred EecCC-ceecee
Confidence 77654 455554
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.4e-33 Score=264.21 Aligned_cols=286 Identities=18% Similarity=0.284 Sum_probs=250.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|..+.|.+|+. .+++++.|.+|+.||
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGWD 118 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEEe
Confidence 78999999999999999999999999999999976543 33446889999999999999999 899999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+++|++++.+++|...|+++... ..+..++.+++.||++++||++.......+. ..-+++++.|..++..+++++-
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI-- 194 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI-- 194 (338)
T ss_pred cccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc--
Confidence 99999999999999999999843 2344678899999999999999877766554 3347899999999999999987
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeeEEEEeCCCCCCC--C
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPE--N 625 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~--v 625 (1091)
++.|.+||++.+.....+.||. ..|+.+..+|+|.++++-+.|.++++||++. .+++..+.++.+.-. .
T Consensus 195 --dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 --DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred --cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 5569999999999999999999 9999999999999999999999999999875 344666766544322 3
Q ss_pred ceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccc
Q 001367 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEA 705 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~ 705 (1091)
..++|+|++..+..|+.|..+++||......+..+++|...|++++| .|....+.+++.
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~F---------------------hp~e~iils~~s 328 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDF---------------------HPTEPIILSCSS 328 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeee---------------------cCCCcEEEEecc
Confidence 56789999999999999999999999999999999999999999999 666778888888
Q ss_pred cccccc
Q 001367 706 ENKSEV 711 (1091)
Q Consensus 706 d~~i~~ 711 (1091)
|++|.+
T Consensus 329 dk~i~l 334 (338)
T KOG0265|consen 329 DKTIYL 334 (338)
T ss_pred CceeEe
Confidence 888765
No 45
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-33 Score=274.45 Aligned_cols=285 Identities=20% Similarity=0.287 Sum_probs=263.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|..+|+.+-|+|+-..+++++.|++|++||..+|+..+ .++||...|.+++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 67899999999999999999999999999999999998755 6889999999999999999 899999999999999
Q ss_pred CCC-CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 472 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
..+ .++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|+++++-+...+.+|...+..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 67888899999999999997764 69999999999999999999999999999999999999999999999976
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCC---------------CCEEEEEeCCCeEEEEECCCCeeEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1091)
+.++++|-..++++...+..|+ .+|.+++|.|. ++++.+++.|++|++||+.++.++.+
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 6779999999999999999988 89999999763 25888899999999999999999999
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCC
Q 001367 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKE 695 (1091)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 695 (1091)
+.+|.. .|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-+++++|. .
T Consensus 330 L~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh---------------------~ 386 (406)
T KOG0295|consen 330 LVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH---------------------K 386 (406)
T ss_pred Eecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC---------------------C
Confidence 998866 79999999999999999999999999999999999999999999999984 4
Q ss_pred CCCccccccccccccccc
Q 001367 696 DVKPEISVEAENKSEVEK 713 (1091)
Q Consensus 696 ~~~~l~s~~~d~~i~~w~ 713 (1091)
+..++++|+-|.++++|.
T Consensus 387 ~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 387 TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCceEEeccccceeeeee
Confidence 445889999999999986
No 46
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.4e-34 Score=290.58 Aligned_cols=296 Identities=16% Similarity=0.248 Sum_probs=253.4
Q ss_pred CCchheeeecccCCCCcEEEEEcC-CCceEEEEEcCCCcEEEEEcCC-CCceeeeceeEEeccccccceeeeeecCCCcc
Q 001367 321 DFPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1091)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~fsp-dg~~llasg~~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 398 (1091)
-+|+..++++.||+..|+++.|.| .+ +||++|+.|+.|+||++.. ++++++ +.||..+
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~ 260 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKP 260 (503)
T ss_pred eccHhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceehh-------------------hhcchhh
Confidence 368999999999999999999999 66 5999999999999999977 777765 7899999
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
|.+++|+++|..+.+++.|+.|++||+++|+++.. +. ....++++.|.||+.. .+++|+.|+.|+.||+++++.+
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVV 335 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHH
Confidence 99999999999999999999999999999987653 21 2346899999999954 7889999999999999999999
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee-ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
+++..|-+.|..+.|. +++..+++.+.|+.++||+.+....... .........++..+|++.++++-+. ++.|
T Consensus 336 qeYd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i 409 (503)
T KOG0282|consen 336 QEYDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYI 409 (503)
T ss_pred HHHHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceE
Confidence 9999999999999994 5778999999999999999987766553 3334456778999999999998765 6778
Q ss_pred EEEecCCc---eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC-
Q 001367 558 VEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN- 633 (1091)
Q Consensus 558 ~iwd~~~~---~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~- 633 (1091)
.++.+... ...+.+.+|... +.-..+.|||||.+|++|+.||.+.+||.++-+++..+..+.. .+..+.|+|.
T Consensus 410 ~ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e 486 (503)
T KOG0282|consen 410 AIFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVE 486 (503)
T ss_pred EEEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCC
Confidence 88876532 334567777632 3456689999999999999999999999999999999988854 6889999994
Q ss_pred CCEEEEEECCCeEEEEE
Q 001367 634 GTLLAVIANENRIKILE 650 (1091)
Q Consensus 634 ~~~l~~~~~dg~i~iwd 650 (1091)
...+|+++.+|.|++|+
T Consensus 487 ~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeEecccCceeEecC
Confidence 56899999999999996
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=280.27 Aligned_cols=285 Identities=21% Similarity=0.298 Sum_probs=247.5
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.-+..|..|.|.|+|++ |++|+..|.+.+|+..+-... .++..|..+|+++.||++|.++
T Consensus 94 Kvkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fnFE-------------------tilQaHDs~Vr~m~ws~~g~wm 153 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFNFE-------------------TILQAHDSPVRTMKWSHNGTWM 153 (464)
T ss_pred ccccceeeEEEcCCCce-eEeecccccEEEecCceeeHH-------------------HHhhhhcccceeEEEccCCCEE
Confidence 33448999999999996 589999999999997432211 1266799999999999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEecc-ccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 490 (1091)
++|+.+|.|++|+..-... + .+.+| ...|++++|+|+.. .+++++.||+|+|||....+.-..+.+|.-.|.+
T Consensus 154 iSgD~gG~iKyWqpnmnnV-k---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 154 ISGDKGGMIKYWQPNMNNV-K---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred EEcCCCceEEecccchhhh-H---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 9999999999999876432 2 34444 48999999999888 7999999999999999999888889999999999
Q ss_pred EeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEE
Q 001367 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1091)
+.|+|.. .++++++.|..|++||.+++.++.++..|...|..+.|+|++++|++++. |..++++|+++.+.+..
T Consensus 228 vdWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 228 VDWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFT 301 (464)
T ss_pred eccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHH
Confidence 9998875 58999999999999999999999999999999999999999999999986 66799999999999999
Q ss_pred EecccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEE
Q 001367 571 YQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1091)
Q Consensus 571 ~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1091)
+++|. ..+.++.|+|-.. .|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|..|++|+.|.++++|
T Consensus 302 ~r~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 302 YRGHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred hhcch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeee
Confidence 99988 8999999999755 555689999999999986666655543 333579999999999999999999999999
Q ss_pred ECC
Q 001367 650 ETP 652 (1091)
Q Consensus 650 d~~ 652 (1091)
.-.
T Consensus 378 ~r~ 380 (464)
T KOG0284|consen 378 TRN 380 (464)
T ss_pred ccC
Confidence 754
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.5e-32 Score=307.76 Aligned_cols=294 Identities=21% Similarity=0.351 Sum_probs=255.7
Q ss_pred eeecccC-CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCC--ceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 327 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 327 ~~~l~~h-~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.+++.+| ...|.++.|||||++ +++++.|+.+++|+..+++ .... +.+|...|.+++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA 210 (456)
T ss_pred eeeecccccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence 5666555 779999999999995 7999999999999997776 3332 578999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEee-CCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1091)
|+||++++++++.|++|+|||+. .+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence 99999999999999999999994 434444 7889999999999999997 89999999999999999999999999
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc--eeeecCCCC--cEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~--~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
+|...|.+++| ++++.+|++++.|+.|++||+.++.. ...+..+.. +++++.|+|++.++++++. ++.+.
T Consensus 286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~ 359 (456)
T KOG0266|consen 286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK 359 (456)
T ss_pred ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence 99999999999 56778999999999999999999883 344444443 5999999999999999986 66799
Q ss_pred EEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
+||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..+. ...+..+.++|..++++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA 438 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence 99999999999999988322245555668889999999999999999999999999988875 45788999999999999
Q ss_pred EEE--CCCeEEEEECC
Q 001367 639 VIA--NENRIKILETP 652 (1091)
Q Consensus 639 ~~~--~dg~i~iwd~~ 652 (1091)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 68999999754
No 49
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-33 Score=275.85 Aligned_cols=292 Identities=16% Similarity=0.197 Sum_probs=250.6
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
++..|+..|.-+.||++|+|||+++.|.+..+|.+.....++..+++.+|..+|..+.||||.+ +|++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 4788999999999999999999999999999999988777777788999999999999999999 89999999999999
Q ss_pred eCCCCceeEEec-CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC-CCCcEEEEEEcCCCCEEEEEe
Q 001367 471 DAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCG 548 (1091)
Q Consensus 471 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~ 548 (1091)
|+.+|.+.+.+. ++...+.+++|. +||..+++|+.|+.+..||++... ...+.+ ....|.+++.++||+++++.+
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~--pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWC--PDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEc--cCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEe
Confidence 999999988774 356788999994 577899999999999999987543 222332 234689999999999999887
Q ss_pred cCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceE
Q 001367 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1091)
. +..|++++..+.........+ .+|++++.+.+++++++.-.+..+.+||++..+.+..+.++.....+..-
T Consensus 374 ~----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 374 V----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred c----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe
Confidence 6 556999998877665444443 58999999999999999999999999999988888888777654455555
Q ss_pred EEcc-CCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 629 CFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 629 ~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
+|.- +..++++|+.|+.|+||+..+++.+..+.||...|++++++|. +...+++++.||
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~--------------------~p~m~ASasDDg 505 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA--------------------DPEMFASASDDG 505 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC--------------------CHHHhhccCCCC
Confidence 6665 5589999999999999999999999999999999999999753 456789999999
Q ss_pred cccccccc
Q 001367 708 KSEVEKPL 715 (1091)
Q Consensus 708 ~i~~w~~~ 715 (1091)
+||+|...
T Consensus 506 tIRIWg~~ 513 (519)
T KOG0293|consen 506 TIRIWGPS 513 (519)
T ss_pred eEEEecCC
Confidence 99999865
No 50
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.6e-32 Score=264.38 Aligned_cols=294 Identities=14% Similarity=0.229 Sum_probs=257.7
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
++.+|.+.|.|+++.|-..++++|+.|++|+|||+.+|+... ++.||...|..+++|+--. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 478999999999999999999999999999999999996443 7889999999999999877 89999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
|++..+.++.+.||-..|++++.+|.- ..|++|+.|.++++||+++......+.+|..+|.++.+.|-+..+++++.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999998765 58999999999999999999999999999999999999998888999876
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
|.+|++||+..|+....+..|. ..+.+++.+|....+++++.| .|+-|++..|..+..+..+.. .+++++.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ 368 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSV 368 (460)
T ss_pred ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeee
Confidence 7789999999999999988877 899999999998888888876 589999999999988776655 5888888
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
+.|+ ++++|+++|.+.+||.+++..++....... | |+
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vq-----------------------------p-------GS------ 405 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ-----------------------------P-------GS------ 405 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCccccccccccc-----------------------------C-------Cc------
Confidence 8876 788999999999999998865554321100 0 00
Q ss_pred cccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecC
Q 001367 711 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 763 (1091)
Q Consensus 711 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~ 763 (1091)
......|.+.+|...|..|+++..|.+|++|.-+
T Consensus 406 -------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 406 -------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred -------------------cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 1145678889999999999999999999999743
No 51
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-28 Score=260.71 Aligned_cols=549 Identities=16% Similarity=0.162 Sum_probs=375.4
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCC-CccEEEEEECCCCCE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSL 410 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~ 410 (1091)
--..+|.++|||.+.+ .||.+-.+|.|.||++..+-... .++.++ ...|.+++|+ ++.+
T Consensus 23 ~~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~R 82 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGR 82 (691)
T ss_pred eeccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCe
Confidence 3445999999999988 47999999999999998754332 224444 5789999999 5667
Q ss_pred EEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE--EecCCCcce
Q 001367 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHGAPV 488 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~v 488 (1091)
|.+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|+.||.+..++...++... .|....+.|
T Consensus 83 LFS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv 157 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV 157 (691)
T ss_pred EEeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceE
Confidence 8888899999999999986544 5667788999999999998 78889999988888887776653 345566889
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-----C---CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----A---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~---~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
.++.| .+++..+++|+.||.|++||...+....... . ...-|.++.|-.++ .|+++ |..|.|.+|
T Consensus 158 Lslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg----DS~G~V~FW 230 (691)
T KOG2048|consen 158 LSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG----DSAGTVTFW 230 (691)
T ss_pred EEEEe--cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe----cCCceEEEE
Confidence 99988 4566789999999999999999888776221 1 12246777777555 45555 447889999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee--EEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
|...+.+++.+..|. ..|.+++..++++++++++.|+.|.-+...+.+. +.......+...+.+++..++ .++
T Consensus 231 d~~~gTLiqS~~~h~---adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~ 305 (691)
T KOG2048|consen 231 DSIFGTLIQSHSCHD---ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALI 305 (691)
T ss_pred cccCcchhhhhhhhh---cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEE
Confidence 999999999888887 8999999999999999999999999988776533 222222222336889998876 899
Q ss_pred EEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccC
Q 001367 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFAR 718 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~ 718 (1091)
+|+.|.++.+-.....+.. .|.... ..|.+.... ....+.+..-..+..+.+|.+....
T Consensus 306 sgG~d~~l~i~~s~~~~~~----~h~~~~----~~p~~~~v~-------------~a~~~~L~~~w~~h~v~lwrlGS~~ 364 (691)
T KOG2048|consen 306 SGGRDFTLAICSSREFKNM----DHRQKN----LFPASDRVS-------------VAPENRLLVLWKAHGVDLWRLGSVI 364 (691)
T ss_pred ecceeeEEEEccccccCch----hhhccc----cccccceee-------------cCccceEEEEeccccccceeccCcc
Confidence 9999999888655432111 111000 000000000 1112233333344666777765431
Q ss_pred Cc------ccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceee
Q 001367 719 PS------ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV 792 (1091)
Q Consensus 719 ~~------~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1091)
.. ....+.. .....|.+.+.||+|+.++.+. -...++|.+..... +++-.+.
T Consensus 365 ~~g~~~~~~Llkl~~---k~~~nIs~~aiSPdg~~Ia~st-~~~~~iy~L~~~~~-----------vk~~~v~------- 422 (691)
T KOG2048|consen 365 LQGEYNYIHLLKLFT---KEKENISCAAISPDGNLIAIST-VSRTKIYRLQPDPN-----------VKVINVD------- 422 (691)
T ss_pred cccccChhhheeeec---CCccceeeeccCCCCCEEEEee-ccceEEEEeccCcc-----------eeEEEec-------
Confidence 11 1111211 2356789999999999655544 44677777654221 0000000
Q ss_pred ecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCce--eEEEec--CCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001367 793 NDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK--TILTIM--PPSPTATSLAFNPHDNNVIAIGMDDST 866 (1091)
Q Consensus 793 ~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~--~~~~~~--~~~~~i~~l~~s~~~~~~la~g~~dg~ 866 (1091)
..+ ........+.|+-|+..++..+ ...+.+++.++.. .+..+. .....|+.++.|| +|++||+.+.+|.
T Consensus 423 -~~~--~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t~g~ 498 (691)
T KOG2048|consen 423 -DVP--LALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAISTRGQ 498 (691)
T ss_pred -cch--hhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEeccce
Confidence 000 1334567788888888887776 4778888877543 333332 2456899999999 9999999999999
Q ss_pred EEEEeccCcceeeeeccccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeec---cCCCcCCCCCceEEE
Q 001367 867 ILIYNARSSEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT---PDGVMTLAPSETHIQ 942 (1091)
Q Consensus 867 i~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~i~~l~ 942 (1091)
|.+|++.+++.......-...|++++|+| +.+.|+.+..++.+.-+|++............ +.........+..+.
T Consensus 499 I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gis 578 (691)
T KOG2048|consen 499 IFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGIS 578 (691)
T ss_pred EEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEE
Confidence 99999998875444434447899999995 66789999999999999995433221111111 111111113678889
Q ss_pred EcCCCCEEEEEe-cCeEEEEEcC
Q 001367 943 FHKDQTRFLLVH-ETHLAIYEAE 964 (1091)
Q Consensus 943 fs~dg~~la~~~-d~~i~vwd~~ 964 (1091)
|+|......... .+-+.+.|..
T Consensus 579 fd~~n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 579 FDPKNSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred eCCCCccEEEEEcCcEEEEEecC
Confidence 988777666543 3456666643
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.3e-31 Score=246.59 Aligned_cols=292 Identities=16% Similarity=0.223 Sum_probs=237.2
Q ss_pred ccccccEEEEEEecC-CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001367 730 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 808 (1091)
Q Consensus 730 ~~~~~~i~~~~~s~d-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 808 (1091)
.+|.+++..++|+|. |..|++++.|..+++|+..... -| .....+. .+|...|+++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~-------~ck~vld-~~hkrsVRsvA 68 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SW-------TCKTVLD-DGHKRSVRSVA 68 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cE-------EEEEecc-ccchheeeeee
Confidence 458889999999999 8889999999999999865210 01 1111122 26999999999
Q ss_pred ecCCCCEEEEEe-CCeEEEEEcc--CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc---ceeeeec
Q 001367 809 LSKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLE 882 (1091)
Q Consensus 809 ~s~dg~~la~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~---~~~~~l~ 882 (1091)
++|.|++||+++ |.++.||.-. ..+++.++.+|...|.+++|++ +|.+||+++.|++|.||.+..+ ++...|.
T Consensus 69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 999999999999 9999999865 4578899999999999999999 9999999999999999999854 5788999
Q ss_pred cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC-CCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEE
Q 001367 883 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI 960 (1091)
Q Consensus 883 ~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~v 960 (1091)
+|...|..+.|+|...+|+|+|.|.+|++|+-. ... ..+.+.+.+|.. .|.+++|++.|..|++ +.|++++|
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd---W~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD---WECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCeEEEEeecCCCC---eeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEe
Confidence 999999999999999999999999999999887 333 567888888886 7999999999999998 57789999
Q ss_pred EEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCC
Q 001367 961 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL 1040 (1091)
Q Consensus 961 wd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~ 1040 (1091)
|...+ .+..-|.+.+..+.|. ...|++++.|+.|+++.-..+-.-..+. ......+.|...|. ++.|.|.
T Consensus 222 w~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~-l~~~~~~aHe~dVN--sV~w~p~ 291 (312)
T KOG0645|consen 222 WRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWN-LLAKKEGAHEVDVN--SVQWNPK 291 (312)
T ss_pred eeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHH-HHHhhhcccccccc--eEEEcCC
Confidence 98652 2344578899999998 4479999999999999876431111111 11222334566666 6789995
Q ss_pred CCCeEEEEecCCcEEEEecC
Q 001367 1041 KPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1041 d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
..++|++|++||.|.+|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 57899999999999999974
No 53
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.2e-32 Score=293.75 Aligned_cols=264 Identities=14% Similarity=0.201 Sum_probs=229.2
Q ss_pred ccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccc---------eeeccCCccccCCCCCceeeecCCCCCCCC
Q 001367 732 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE---------ATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 802 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1091)
....+.+..|++|+..++.+..|..|++|.+...+...... ..+.......|..++..... + .+|.+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L--~GH~G 452 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--L--YGHSG 452 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--e--ecCCC
Confidence 34578899999999988888899999999998543211111 11112234445444442222 2 36999
Q ss_pred CeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee
Q 001367 803 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 881 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l 881 (1091)
+|....|+|+.++|++++ |+++|+|.+.+..++..+++|..+|..+.|+| -|.++|+++.|++.++|......+++.+
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhh
Confidence 999999999999999999 79999999999999999999999999999999 8999999999999999999999999999
Q ss_pred ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEE
Q 001367 882 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI 960 (1091)
Q Consensus 882 ~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~v 960 (1091)
.||.+.|.|+.|+|+..|+|+||.|.+|++||+.+|. .++.+.||.. +|.+++|||+|++||+ +.|+.|.+
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF~GH~~---~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIFTGHKG---PVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEecCCCC---ceEEEEEcCCCceEeecccCCcEEE
Confidence 9999999999999999999999999999999999965 5777788887 9999999999999999 58899999
Q ss_pred EEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 961 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 961 wd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
||+.++..+.. +.+|.+.|.++.||.||..||+|+.|.+|++||+..-
T Consensus 604 WDl~~~~~v~~-l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQ-LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhh-hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999988 4578999999999999999999999999999998754
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.8e-30 Score=282.44 Aligned_cols=287 Identities=25% Similarity=0.412 Sum_probs=254.0
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+++.+|.++|++++|+|+++ ++++|+.||.|.+|++.+++.... +.+|...+..+.|+|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD 62 (289)
T ss_pred hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence 56789999999999999998 678888999999999998875543 5678899999999999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
+++|++++.++.|++|++.+++... .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 9999999999999999999875444 5678888999999999977 7888888999999999999999999999999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1091)
+.++++++. +.++++++.+|.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+.+||+.+++.
T Consensus 138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~ 211 (289)
T cd00200 138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence 999999654 568888888999999999988888888888889999999999999988875 56799999999888
Q ss_pred eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 568 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
+..+..+. ..+.++.|+|++.++++++.+|.|++|++.+++....+..+. ..+.+++|+|+++++++++.|+.++
T Consensus 212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEE
Confidence 88887666 789999999998888888889999999999998888887554 3689999999999999999999999
Q ss_pred EEE
Q 001367 648 ILE 650 (1091)
Q Consensus 648 iwd 650 (1091)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 995
No 55
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3e-32 Score=270.82 Aligned_cols=280 Identities=16% Similarity=0.220 Sum_probs=235.3
Q ss_pred CCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccc
Q 001367 623 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEIS 702 (1091)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s 702 (1091)
..|..+.|.|+|+.|++|+..|.+.+|+...-.--..+..|..+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~------------------------------------ 140 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP------------------------------------ 140 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc------------------------------------
Confidence 36889999999999999999999999997533222233444443
Q ss_pred cccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccc
Q 001367 703 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 782 (1091)
Q Consensus 703 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 782 (1091)
|+++.|+++|.+++++..+|.|++|+...+.. +..
T Consensus 141 ---------------------------------Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV------------k~~ 175 (464)
T KOG0284|consen 141 ---------------------------------VRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV------------KII 175 (464)
T ss_pred ---------------------------------ceeEEEccCCCEEEEcCCCceEEecccchhhh------------HHh
Confidence 45566667777777777777777776443211 000
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEE
Q 001367 783 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 861 (1091)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g 861 (1091)
...|...|++++|||+...+++++ ||+|+|||....+..+.+.+|.-.|++++|+| ...+||+|
T Consensus 176 --------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasg 240 (464)
T KOG0284|consen 176 --------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASG 240 (464)
T ss_pred --------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEc
Confidence 012568999999999999999998 69999999999998889999999999999999 78899999
Q ss_pred eCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEE
Q 001367 862 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 941 (1091)
Q Consensus 862 ~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 941 (1091)
+.|..|++||.++|+++.++.+|...|.++.|+|++++|+|+|.|..++++|+.+ .+.+...++|.. .+.++
T Consensus 241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-----mkEl~~~r~Hkk---dv~~~ 312 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-----MKELFTYRGHKK---DVTSL 312 (464)
T ss_pred cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-----hHHHHHhhcchh---hheee
Confidence 9999999999999999999999999999999999999999999999999999996 335667778876 79999
Q ss_pred EEcCCCCEEEE--EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeC
Q 001367 942 QFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 942 ~fs~dg~~la~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~ 1006 (1091)
+|+|-..-|.+ |.||.|..|.+...+.+..+..+|...|++++|.|=|..|++|+.|.++++|.-
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99997665555 699999999999777888888899999999999999999999999999999964
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=2.9e-32 Score=264.38 Aligned_cols=277 Identities=21% Similarity=0.311 Sum_probs=234.3
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
...+.|.|+++.. + .+++|..|++|+|||..+-.+++. +.||++.|.|+.|. .+.+
T Consensus 195 e~skgVYClQYDD-~--kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqyd--~rvi 250 (499)
T KOG0281|consen 195 ENSKGVYCLQYDD-E--KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQYD--ERVI 250 (499)
T ss_pred ccCCceEEEEecc-h--hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeecc--ceEE
Confidence 3566999999964 3 359999999999999999888765 88999999999985 5699
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc---eeEEecCCCcce
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEGHGAPV 488 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v 488 (1091)
++|+.|.+|+|||+++|++++ ++-+|...|..+.|+.. ++++++.|.+|.+||+.... +.+.+.||...|
T Consensus 251 isGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV 323 (499)
T KOG0281|consen 251 VSGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 323 (499)
T ss_pred EecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence 999999999999999999887 67789999999999853 79999999999999998764 346678999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
+.+.| +.+++++++.|.+|++|++.+.+....+.+|...|.|+.+ .|+++++|+. +.+|++||+..|.++
T Consensus 324 NvVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 324 NVVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACL 393 (499)
T ss_pred eeecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHH
Confidence 99988 4469999999999999999999999999999999988775 5788888875 778999999999999
Q ss_pred EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEE-------eCCCCCCCCceEEEccCCCEEEEEE
Q 001367 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
+.++||+ .-|.++.|. .+.+++|+.||+|++||+..+...... ....+...|..+.|. ...+++.+
T Consensus 394 RvLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsss 466 (499)
T KOG0281|consen 394 RVLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSS 466 (499)
T ss_pred HHHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEecc
Confidence 9999999 899999995 578999999999999999876433111 111222346666664 66899999
Q ss_pred CCCeEEEEECCCCCe
Q 001367 642 NENRIKILETPESNS 656 (1091)
Q Consensus 642 ~dg~i~iwd~~~~~~ 656 (1091)
.|.+|.|||..++..
T Consensus 467 HddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 467 HDDTILIWDFLNGPP 481 (499)
T ss_pred CCCeEEEEEcCCCCc
Confidence 999999999987643
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=3.4e-30 Score=291.63 Aligned_cols=290 Identities=21% Similarity=0.304 Sum_probs=254.5
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC-C
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-V 473 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~-~ 473 (1091)
|...|.++.|++||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++ ++++++.|++|+|||+ .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeeccC
Confidence 478999999999999999999999999999977662 12235679999999999999999 8999999999999999 5
Q ss_pred CCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
.+..++++.+|...|++++|++ +++++++|+.|++|++||+++++....+..|...|.+++|++++++|++++.
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---- 308 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---- 308 (456)
T ss_pred CCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC----
Confidence 6689999999999999999965 5589999999999999999999999999999999999999999999999865
Q ss_pred ceEEEEEecCCce--eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC-CCCceEEE
Q 001367 554 ESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICF 630 (1091)
Q Consensus 554 ~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~ 630 (1091)
++.|++||+.++. +...+.++.... .+.++.|+|++.++++++.|+.+++||+..+........+... ..+.....
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL 387 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc
Confidence 7789999999999 567788777333 7999999999999999999999999999999999888877553 13344556
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCCeecccccc-cccceeeeeccccccccccccCCcccCCCCCCCCCcccccc--ccc
Q 001367 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVE--AEN 707 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~--~d~ 707 (1091)
++.+.++++|+.|+.|++|+..++..+..+.+| ...+..+++ .+..+++++++ .|+
T Consensus 388 ~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~---------------------~~~~~~~~s~s~~~d~ 446 (456)
T KOG0266|consen 388 STGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS---------------------HPTENLIASSSFEGDG 446 (456)
T ss_pred cCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecccc---------------------CCCcCeeeecCcCCCc
Confidence 789999999999999999999999999999999 777777777 56677777776 688
Q ss_pred cccccccc
Q 001367 708 KSEVEKPL 715 (1091)
Q Consensus 708 ~i~~w~~~ 715 (1091)
.+++|..+
T Consensus 447 ~~~~w~~~ 454 (456)
T KOG0266|consen 447 LIRLWKYD 454 (456)
T ss_pred eEEEecCC
Confidence 89999754
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-30 Score=238.35 Aligned_cols=268 Identities=20% Similarity=0.315 Sum_probs=237.2
Q ss_pred eeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEE
Q 001367 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1091)
Q Consensus 390 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1091)
.++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++ +..+|...|..++.+.|+. .+++|+.|..|.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 4478899999999999999999999999999999999998776 7889999999999999998 6999999999999
Q ss_pred EeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC--CceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
||+.+|+.++.|.+|.+.|+.+.| +++...+++|+.|..+++||.++. ++++.+......|.++..+ +..++++
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~f--NeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRF--NEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEe--cCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 999999999999999999999999 556689999999999999998764 4455666667788887764 4567777
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
+. +++++.||++.|+....+-+ .+|++++|+++++..++++.|+++++.|-.+|+++..+.+|.....-..
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 65 77799999999988777666 5699999999999999999999999999999999999988876555567
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeeccccccccc-ceeeeeccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPI 675 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~ 675 (1091)
++++.....+++|+.||.+++||+.....+..+..+... +..+++.|.
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccC
Confidence 788888889999999999999999999999988888877 788888654
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.1e-31 Score=271.07 Aligned_cols=290 Identities=15% Similarity=0.192 Sum_probs=252.5
Q ss_pred eecCCCccEEEEEECC-CCCEEEEEECCCEEEEEEeeC-CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEE
Q 001367 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1091)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .++|++.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 4889999999999999 899999999999999999987 55555 7889999999999999999 799999999999
Q ss_pred EEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEe
Q 001367 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 548 (1091)
+||+++|+++..|. ....++++.|+|++ ...+++|+.|+.|+.||+++++....+..|-+.|..+.|-++|+++++.+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999985 45678889998775 47899999999999999999999999999999999999999999999988
Q ss_pred cCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eEEEEeCCCCCCCC
Q 001367 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---LLTTIDAGGGLPEN 625 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~v 625 (1091)
. +..+++|+...+..+....... .....++..+|+++++++-+.|+.|.++.+...- ....+.+|......
T Consensus 362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 6 5579999999887766655444 3567889999999999999999999999865432 22344444433445
Q ss_pred ceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccc
Q 001367 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEA 705 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~ 705 (1091)
..+.|||||.+|++|..||.+.+||.++.+.+..++.|..++..+.|+|. ....+++++.
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~--------------------e~Skvat~~w 495 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV--------------------EPSKVATCGW 495 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC--------------------CcceeEeccc
Confidence 78999999999999999999999999999999999999999999999753 3456889999
Q ss_pred cccccccc
Q 001367 706 ENKSEVEK 713 (1091)
Q Consensus 706 d~~i~~w~ 713 (1091)
+|.|++|+
T Consensus 496 ~G~Ikiwd 503 (503)
T KOG0282|consen 496 DGLIKIWD 503 (503)
T ss_pred CceeEecC
Confidence 99999996
No 60
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1e-30 Score=242.66 Aligned_cols=289 Identities=16% Similarity=0.210 Sum_probs=254.4
Q ss_pred eecccCCCCcEEEEEcC---CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 328 QTLIEGSSSPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fsp---dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+-.||+.+|-.++||| +| ++|++++.||.-.+-+=.||.-+.+ +.||.+.|.+..+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence 34589999999999985 77 5899999999999999999998876 8899999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc-eeEEecC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG 483 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~ 483 (1091)
+.+..+.|+++.|-+.+|||.-+|..+.. -.|..-|.+++|+.|.+ +|++|+.+..++|||++..+ +...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhs----f~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHS----FEHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhh----hhhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 99999999999999999999999987763 25888999999999999 79999999999999998654 5678899
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
|.+.|..+.|.. ..+.+++.+.|++||+||.+++.....+.. ..++.++.++++|++|..+.. +.|..||..
T Consensus 142 htg~Ir~v~wc~--eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~g-----ssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCH--EDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYG-----SSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEec--cCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecC-----ceeEEeccc
Confidence 999999999864 336788889999999999999998887764 458899999999999988753 349999999
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEE-eCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
+-.+++.+.... .|.+..++|+...+++|++|..++.||..+++.+..+ ..| ..+|.|+.|+|+|...++|+.
T Consensus 214 sf~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 214 SFGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred cccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCC
Confidence 999988887654 7899999999999999999999999999999998886 433 458999999999999999999
Q ss_pred CCeEEEEECCCCCe
Q 001367 643 ENRIKILETPESNS 656 (1091)
Q Consensus 643 dg~i~iwd~~~~~~ 656 (1091)
||+|++|....++.
T Consensus 288 DGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKT 301 (334)
T ss_pred CceEEEEEecCCCc
Confidence 99999999876543
No 61
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=3.8e-28 Score=253.52 Aligned_cols=684 Identities=16% Similarity=0.144 Sum_probs=364.9
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.-+-.|.+|.+.|+.+.|||-...|||+|+.|..|+||.+..|-...- .-....+.+.+-.|.|+.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence 345678899999999999997767999999999999999985432210 0122235555678899999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC-CCceeEEecC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEG 483 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~ 483 (1091)
+|...-|...+..|+++|||+.+++... ++.+|...|.++.|+.||+ ++++++.|..|+|||.+ .++.++...+
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9977767777788999999999986554 7889999999999999999 89999999999999987 4678888888
Q ss_pred CCcce-EEEeecccCCceEEEEEecC----CeEEEEecCCCCce-eeecC-CCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 484 HGAPV-YSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 484 ~~~~v-~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
|.+.- ..+.| -++-..|++.+.+ ..|++||.+..... ..+.. ....|.---|.||.++|+.++ .|+..
T Consensus 212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~ 286 (1012)
T KOG1445|consen 212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNK 286 (1012)
T ss_pred cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcce
Confidence 87642 22344 3444567776655 35899998764432 22222 223455566899999988876 35778
Q ss_pred EEEEecCCceeeE--EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceE-EEcc-
Q 001367 557 LVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFNK- 632 (1091)
Q Consensus 557 i~iwd~~~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s~- 632 (1091)
++.+.+...+..- .++..- .......++-|....-+..++ ..+++.+.....+.....-.. .+. .|+.
T Consensus 287 l~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPR----ksyrdFH~D 358 (1012)
T KOG1445|consen 287 LFMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPR----KSYRDFHSD 358 (1012)
T ss_pred EEEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeecccccch----hhhhhhhhh
Confidence 8888877654321 111100 011122233333222122221 112222222221111000000 000 0111
Q ss_pred ---CCCEEEEEECCCeEEEEECCCCCeeccc------ccccc----cce------eeeecccccccccc-c--cCCcccC
Q 001367 633 ---NGTLLAVIANENRIKILETPESNSVDAA------GVLSD----NLR------KLSVNPISTVTGAG-I--ANGSVSN 690 (1091)
Q Consensus 633 ---~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~----~v~------~~~~~~~~~~~~~~-~--~~g~~~~ 690 (1091)
+..-...+..-| -|=..+++.++.. +.|.. .+. .-+|.+.....+.- . +.....
T Consensus 359 LfPeT~G~~p~~~ag---eWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~- 434 (1012)
T KOG1445|consen 359 LFPETRGAEPGCTAG---EWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSS- 434 (1012)
T ss_pred hCccccCCccCcCcc---ceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccc-
Confidence 000000000000 0100011000000 00000 000 00000000000000 0 000000
Q ss_pred CCCCCC--CCcccccccccccccccccccCCccc-ce--ee-cCCccccccEE---------------------------
Q 001367 691 EDPKED--VKPEISVEAENKSEVEKPLFARPSEC-QS--LL-LPSKVKANKIS--------------------------- 737 (1091)
Q Consensus 691 ~~~s~~--~~~l~s~~~d~~i~~w~~~~~~~~~~-~~--~~-~~~~~~~~~i~--------------------------- 737 (1091)
+.-|| .+.-+. ....+|-.+....+.... .. .. -...+...++.
T Consensus 435 -~~~Pd~~~qpaV~--~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~ 511 (1012)
T KOG1445|consen 435 -NNVPDVQEQPAVP--KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVV 511 (1012)
T ss_pred -cCCCccccCCCcC--cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCccccccccccccc
Confidence 00011 000000 000000000000000000 00 00 00000000000
Q ss_pred EEEEe---c----C--CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceee----ecCCCCCCCCCe
Q 001367 738 RLTYN---N----G--GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV----NDTTDSNSQEAV 804 (1091)
Q Consensus 738 ~~~~s---~----d--g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v 804 (1091)
.-+|- | . |..+-+ .++ +..-. ....+...-..+.-|.-..|..... ..+...+..-+-
T Consensus 512 ~P~~~ksvPe~~~~~~g~~~sa--t~~---v~~s~----s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg 582 (1012)
T KOG1445|consen 512 GPAFGKSVPEQPPVNFGKPISA--TNR---VPLSQ----SVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG 582 (1012)
T ss_pred CccccccCCCCCCcccCCCccc--ccc---ccccc----cccccceeeccchheeeccCccccchhhhhhhhcccccCCC
Confidence 00000 0 0 000000 000 00000 0000000000000011111110000 000000011111
Q ss_pred eEEEecCCCCEEEEE---eCCeEEEEEccCc-eeEEE-ec--CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc--
Q 001367 805 PCFALSKNDAYLFSA---SGGVISLYIVMTF-KTILT-IM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-- 875 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~---~dg~i~iwd~~~~-~~~~~-~~--~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~-- 875 (1091)
.+--|..+.+++|+- +.|.|.||++... +..-. +. .....|+.+.|.|.|...||++++||.|++|.+..+
T Consensus 583 EsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl 662 (1012)
T KOG1445|consen 583 ESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL 662 (1012)
T ss_pred ccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence 222344566667653 4789999998743 22211 11 134578999999999999999999999999998764
Q ss_pred -----ceeeeeccccCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCE
Q 001367 876 -----EVISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 949 (1091)
Q Consensus 876 -----~~~~~l~~h~~~V~~l~~spd-g~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 949 (1091)
+.-..+.+|...|+++.|+|- ...|++++.|-+|++||+.+.. ....+.||.. .|..++|||||+.
T Consensus 663 ~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWSpdGr~ 734 (1012)
T KOG1445|consen 663 PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWSPDGRR 734 (1012)
T ss_pred CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEECCCCcc
Confidence 344678899999999999994 5789999999999999999854 4455677776 8999999999999
Q ss_pred EEE-EecCeEEEEEcCCcceeeeeecCC-ccCEEEEEEeeCCCEEEEEEcC----CcEEEEeCCCCceEEEeecccccCC
Q 001367 950 FLL-VHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD----GTLSIHEASNLEVQCRILSTAYLRP 1023 (1091)
Q Consensus 950 la~-~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~v~fs~dg~~l~t~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~ 1023 (1091)
+|+ +.||+|+||+.++++....--.+- ..+-..|.|.-||+++++.+-| ..|.+||..+....-......-..
T Consensus 735 ~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva- 813 (1012)
T KOG1445|consen 735 IATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA- 813 (1012)
T ss_pred eeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc-
Confidence 999 899999999998876543222221 3455678899999999888776 458888877654221110000000
Q ss_pred CCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCCCcccCC
Q 001367 1024 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLP 1070 (1091)
Q Consensus 1024 ~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~~~~~~~ 1070 (1091)
. .++.=.|+++.+-+|++|-.|..|..|++....+..-.+.
T Consensus 814 ---p---s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~ 854 (1012)
T KOG1445|consen 814 ---P---SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLA 854 (1012)
T ss_pred ---C---ccccccccCCCceEEEecCCCceEEEEEecCCCceeeecc
Confidence 0 1122236666577899999999999999988776655443
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.3e-28 Score=301.76 Aligned_cols=294 Identities=14% Similarity=0.172 Sum_probs=237.6
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 408 (1091)
+..|.+.|++++|+|+|+ ++|+|+.|+.|+|||+.+...... . .......+. +...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCC
Confidence 456999999999999998 679999999999999864211000 0 000001122 346899999997 57
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC-CCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
.+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999876544 6789999999999997 677 8999999999999999999998888754 57
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCC-ceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc-
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 565 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~- 565 (1091)
|.++.|.+ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. ++.|++||+..+
T Consensus 620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~ 693 (793)
T PLN00181 620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI 693 (793)
T ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence 88888853 467899999999999999998765 455677888899999997 7788888875 677999999743
Q ss_pred -----eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC-----------CCCCCCCceEE
Q 001367 566 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC 629 (1091)
Q Consensus 566 -----~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~ 629 (1091)
..+..+.+|. ..+.+++|+|+++++++|+.|+.|++|+......+..+.. ..+...|.+++
T Consensus 694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 5677788877 7899999999999999999999999999876654433211 12223589999
Q ss_pred EccCCCEEEEEECCCeEEEEEC
Q 001367 630 FNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
|+|++..|++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999986
No 63
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=6.8e-31 Score=254.88 Aligned_cols=275 Identities=16% Similarity=0.250 Sum_probs=234.4
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
....|.|+.+ |...+++|..|++|+|||..+-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+|||+.+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3467888887 56789999999999999999987776 678999999999995 45 899999999999999999
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce---eeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
|+++.++-+|...|..+.|+ ..++++++.|.++.+||+.....+ ..+.+|...|..+.|+. ++++++++
T Consensus 267 ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecC--
Confidence 99999999999999999984 249999999999999999876643 36778888999988854 58888875
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
+.+|++|++.+++.++++.+|. ..|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD 409 (499)
T ss_pred --CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence 7789999999999999999998 78888876 578999999999999999999999999998866 58899996
Q ss_pred cCCCEEEEEECCCeEEEEECCCCC---------eecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccc
Q 001367 632 KNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEIS 702 (1091)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s 702 (1091)
.+.+++|..||+|++||+..+. ++..+..|.+.|..+.| |...+++
T Consensus 410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF-----------------------D~fqIvs 464 (499)
T KOG0281|consen 410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF-----------------------DEFQIIS 464 (499)
T ss_pred --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee-----------------------cceEEEe
Confidence 6789999999999999998763 33445566667766655 4567889
Q ss_pred cccccccccccccccCCc
Q 001367 703 VEAENKSEVEKPLFARPS 720 (1091)
Q Consensus 703 ~~~d~~i~~w~~~~~~~~ 720 (1091)
++.|.+|-+||+..+.+.
T Consensus 465 ssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 465 SSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccCCCeEEEEEcCCCCcc
Confidence 999999999998754443
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.3e-28 Score=267.91 Aligned_cols=285 Identities=23% Similarity=0.342 Sum_probs=253.2
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|..+|++++|+|++++|++++.++.|++|++.+++... .+..|...+..+.|+|+++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 66899999999999999999999999999999999876433 5678999999999999998 799999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+.+++.+..+..|...+.++.+++. +.++++++.+|.+++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9998889999999999999999654 568888888999999999988888888888889999999999988888763
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
++.+++||+.+++.+..+..+. ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..+.. .+.++.|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~ 228 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFS 228 (289)
T ss_pred --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEc
Confidence 5569999999998888888766 7899999999999999999999999999999888887754433 68999999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccc
Q 001367 632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEV 711 (1091)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~ 711 (1091)
|++.++++++.+|.+++|+..++.....+..+...+.++++ +++++.+++++.|+.+++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~---------------------~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW---------------------SPDGKRLASGSADGTIRI 287 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEE---------------------CCCCCEEEEecCCCeEEe
Confidence 99888888888999999999988888888888888999988 677888999999999999
Q ss_pred cc
Q 001367 712 EK 713 (1091)
Q Consensus 712 w~ 713 (1091)
|+
T Consensus 288 w~ 289 (289)
T cd00200 288 WD 289 (289)
T ss_pred cC
Confidence 96
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=9.9e-30 Score=253.50 Aligned_cols=297 Identities=16% Similarity=0.224 Sum_probs=257.1
Q ss_pred CCCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccE
Q 001367 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1091)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1091)
+.+|..+...|..|.++|..+.|-++.. .|++|+.|..|++|++..++.-.. .++.|..++|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 5688999999999999999999999965 469999999999999987762221 1277888999
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
+++.|.++++++++++.|+.+++|++...+... ++.||++.|+++.|..... .+++|+.|.+|++||+..+.|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999876554 7889999999999998776 59999999999999999999887
Q ss_pred EecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
++- ....+..|+.. ...+++|..|+.|++||.++.........++ .|+++..++++..+.+++. +..+.+
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 33445555553 3578999999999999999998888887766 9999999999999999976 667999
Q ss_pred EecCCceeeEEEecccc-cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 560 WNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 560 wd~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
.|+++.+....+..... .....+.+.|+|++.|+++||.||.|+||++.++++...+......+.|.+++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 99999998888765431 12347889999999999999999999999999999999998877766799999999999999
Q ss_pred EEECCCeEEEE
Q 001367 639 VIANENRIKIL 649 (1091)
Q Consensus 639 ~~~~dg~i~iw 649 (1091)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999998
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.5e-29 Score=241.59 Aligned_cols=289 Identities=16% Similarity=0.207 Sum_probs=251.2
Q ss_pred CCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccce-----eEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEE
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-----QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~-----~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1091)
+..+.+.|..|||||+||++|+.||.|.+||..+|+..+. .-.+--+..+|.|+.||.|.. ++++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEE
Confidence 5667899999999999999999999999999999875332 112345778999999999999 899999999999
Q ss_pred EEeCCCCceeEEec-CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 469 VWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 469 iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
||.+.+|.|++.|. .|...|+++.| +.|+..+++++.|.++++--+.+++....+.+|..-|+...|++||.+++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSF--SRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEE--ccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 99999999999996 89999999999 5577899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCC-CCCCC
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPEN 625 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v 625 (1091)
+. +++|++|+..+.+++.+|+... ...+|.++-.-|.+ .+++++...++|+|.++. |+.+..+.... .....
T Consensus 367 Ss----DgtvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 367 SS----DGTVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF 440 (508)
T ss_pred cC----CccEEEecCcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence 86 7779999999999999988654 34678887777654 678888899999999984 67777775432 22346
Q ss_pred ceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccc
Q 001367 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEA 705 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~ 705 (1091)
.+++.+|.|.++++.+.|+.++.|...++..-..+..|...+..++- .|..+.+++-+.
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~H---------------------HPHqNllAsYsE 499 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTH---------------------HPHQNLLASYSE 499 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccccccc---------------------Ccccchhhhhcc
Confidence 67889999999999999999999999999999999988888877766 677888999999
Q ss_pred cccccccc
Q 001367 706 ENKSEVEK 713 (1091)
Q Consensus 706 d~~i~~w~ 713 (1091)
||.+++|.
T Consensus 500 DgllKLWk 507 (508)
T KOG0275|consen 500 DGLLKLWK 507 (508)
T ss_pred cchhhhcC
Confidence 99999996
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.8e-27 Score=291.51 Aligned_cols=322 Identities=14% Similarity=0.178 Sum_probs=247.4
Q ss_pred CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCC----ccc
Q 001367 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA 431 (1091)
Q Consensus 356 dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~ 431 (1091)
+|-+++|+..+.+..... +..-+..|...|.+++|+|+|++||+|+.|+.|+||++.+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 577888887765443210 11114569999999999999999999999999999998642 111
Q ss_pred c-eeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCe
Q 001367 432 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 510 (1091)
Q Consensus 432 ~-~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 510 (1091)
. ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|...|++++|++. ++.+|++|+.||.
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 111233 3467999999886433 7999999999999999999999999999999999999753 5579999999999
Q ss_pred EEEEecCCCCceeeecCCCCcEEEEEEc-CCCCEEEEEecCCCCceEEEEEecCCce-eeEEEecccccccceEEEEEcC
Q 001367 511 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 511 i~iwd~~~~~~~~~~~~~~~~i~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
|++||+.+......+..+ ..+.++.|+ +++.++++++. ++.|++||+.++. .+..+.+|. ..|.++.|.
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~- 670 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV- 670 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence 999999988777766644 578899995 57899999875 6779999998765 456667766 889999997
Q ss_pred CCCEEEEEeCCCeEEEEECCCC------eeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccccc
Q 001367 589 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
++.++++++.|++|++||+..+ ..+..+..|.. .+..++|++++++|++|+.|+.|++|+............
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 6789999999999999999743 45666766543 678899999999999999999999999765432211110
Q ss_pred c-cccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEE
Q 001367 663 L-SDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 741 (1091)
Q Consensus 663 ~-~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 741 (1091)
. ...+ ..+ ....+...|.+++|
T Consensus 749 ~~~~~~-------------------------------------------------------~~~--~~~~~~~~V~~v~w 771 (793)
T PLN00181 749 KTIDPV-------------------------------------------------------SGL--EVDDASQFISSVCW 771 (793)
T ss_pred ccCCcc-------------------------------------------------------ccc--ccCCCCcEEEEEEE
Confidence 0 0000 000 00124567999999
Q ss_pred ecCCCeEEEeecCceEEEeec
Q 001367 742 NNGGQAIFALASNGVHLMWRW 762 (1091)
Q Consensus 742 s~dg~~l~~~~~dg~i~vw~~ 762 (1091)
++++..+++++.+|.|++|++
T Consensus 772 s~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 772 RGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999985
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-28 Score=249.30 Aligned_cols=286 Identities=19% Similarity=0.235 Sum_probs=242.6
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
...+|. .|++++|||...+=+|+.+. -.+.||+..+...+.. +......|.++.|-.||
T Consensus 22 ~~ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG 80 (487)
T KOG0310|consen 22 VHKEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDG 80 (487)
T ss_pred cccccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCC
Confidence 345666 99999999966543344332 6799999888766643 33456789999999999
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
++||+|...|.|+|+|..+...++ .+.+|+.+|..+.|+|++.. .+++|+.|+.+++||+.+......+.+|+.-|
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV 156 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV 156 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence 999999999999999977654455 57899999999999999887 89999999999999999999877999999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce-e
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-I 567 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~ 567 (1091)
.+.+++|. ++.++++|+.||.|++||.+........-.|+.+|.++.+-|.|..++++++ +.+++||+.+|. .
T Consensus 157 R~g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 157 RCGDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQL 230 (487)
T ss_pred EeeccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCcee
Confidence 99999876 4579999999999999999998766666678899999999999999999874 359999999654 4
Q ss_pred eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 568 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
+..+..|. ..|+|+++..++..|++++-|+.+++||+.+.+.+..+...+ +|.+++.+|++..++.|..+|.+.
T Consensus 231 l~~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 231 LTSMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred hhhhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceee
Confidence 44444455 899999999999999999999999999999999999887664 489999999999999999999887
Q ss_pred EEEC
Q 001367 648 ILET 651 (1091)
Q Consensus 648 iwd~ 651 (1091)
+-+.
T Consensus 305 ~rr~ 308 (487)
T KOG0310|consen 305 IRRR 308 (487)
T ss_pred eehh
Confidence 7643
No 69
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=5.4e-28 Score=231.48 Aligned_cols=316 Identities=16% Similarity=0.193 Sum_probs=242.4
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.....|..|+.++.+.+|||||. |+|+|+.|.+|+|.|++..-... ....+..-....+..--.++..|...|+++.|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred cceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhccCcccceee
Confidence 34456889999999999999998 88999999999999987210000 00000000000110112247789999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe---
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--- 481 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--- 481 (1091)
+|....|++|+.|++|+++|+......+..+.+ ....+|.++.|+|.|. +|+.|....++++||+.+-++...-
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcc
Confidence 999999999999999999999865443333233 3456899999999999 7888998899999999998876543
Q ss_pred cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-CC-CCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-AP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
..|.+.|+++.++ +.+.+.++++.||.|++||--+.+++..+. .| +..|.+..|..+|+++++.+. +..+++
T Consensus 258 ~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkL 331 (430)
T KOG0640|consen 258 DQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKL 331 (430)
T ss_pred cccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeee
Confidence 4689999999985 566899999999999999987777776553 23 347899999999999999875 778999
Q ss_pred EecCCceeeEEEecccccc--cceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCE
Q 001367 560 WNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1091)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1091)
|.+.+++.+..+.|-...+ .--+...|+....+++.-. ..+.+.-||.+++..+..+... +...+..+.-||.+.-
T Consensus 332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slg-Hn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLG-HNGAVRWIVHSPVEPA 410 (430)
T ss_pred eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccC-CCCCceEEEeCCCCCc
Confidence 9999999999998753111 1122345676777777744 4577999999998877766653 3457899999999999
Q ss_pred EEEEECCCeEEEEECC
Q 001367 637 LAVIANENRIKILETP 652 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~ 652 (1091)
+.+++.|..+++|--.
T Consensus 411 FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 411 FMTCSDDFRARFWYRR 426 (430)
T ss_pred eeeecccceeeeeeec
Confidence 9999999999999643
No 70
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.3e-27 Score=213.87 Aligned_cols=312 Identities=17% Similarity=0.207 Sum_probs=239.7
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
..++.+|.... .|.+++|+|.|. |.|+|+...+.+|.....-..++. ..+.....+....+.-+.|.+.|.|.+
T Consensus 23 f~~i~~l~dsq-airav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 23 FEAINILEDSQ-AIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred eEEEEEecchh-heeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEE
Confidence 45667776654 999999999998 779999999999886543221110 000000001111222567999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEee--CCcccceeEEEeccccCeeEEEEcCC---CCceEEEEee-CCCcEEEEeCCCCce
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSR 477 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~ 477 (1091)
|||+|++||+|++|.+|++.-.. +......-.++.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence 99999999999999999986554 43334444578889999999999654 222 566654 578899999999999
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC-------CCCcEEEEEEcCCCCEEEEEecC
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
.+.+.+|++.|.++.- -++.++++|+.|.+|++||++-......+.. ....|.+++..|.|+.|+++..
T Consensus 176 ~~a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~- 251 (350)
T KOG0641|consen 176 FHALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA- 251 (350)
T ss_pred ceeecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence 9999999999988752 2567999999999999999988777665432 2247899999999999999876
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeEEEEeCCCCCCCCceE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRI 628 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v 628 (1091)
+....+||++.++.++.+..|. ..|.++.|+|...++++++.|..|++-|+... ..+..+....+...+..+
T Consensus 252 ---dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~ 325 (350)
T KOG0641|consen 252 ---DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQC 325 (350)
T ss_pred ---CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEE
Confidence 5669999999999999999988 99999999999999999999999999998642 111111122233457889
Q ss_pred EEccCCCEEEEEECCCeEEEEECC
Q 001367 629 CFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 629 ~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
.|+|..--+++.+.|.++.+|.+.
T Consensus 326 rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 326 RWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EecCccceeeeccCcceEEEeccC
Confidence 999998889999999999999764
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=5.4e-28 Score=271.46 Aligned_cols=307 Identities=19% Similarity=0.246 Sum_probs=248.1
Q ss_pred cCCCCcEEEEEcCCCceEEEEEc--CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~--~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
.+...|..++.+|||. .+|||+ .||.++||+...=-... ..++.. .+.....+..|.+.|+|+.|||||+
T Consensus 11 H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred cCCeeEEEEEecCCce-eEecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCC
Confidence 3445789999999998 569999 89999999965311000 001110 0111123667999999999999999
Q ss_pred EEEEEECCCEEEEEEeeC----------C-----cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 410 LLGVAYSKHIVQLYAYHG----------G-----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~----------~-----~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
|||+|++|+.|.||+... | +..+....+.+|...|..++|+|++. ++++++.|++|.|||..+
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence 999999999999999883 0 11234557889999999999999999 999999999999999999
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC------CcEEEEEEcCCCCEEEEEe
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCG 548 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~i~~~~~s~d~~~l~~~~ 548 (1091)
.+.+..+.+|...|..+.| +|-|+++++-+.|++|++|+...-.....+..+- .-+..+.|||||++|++..
T Consensus 161 F~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999 4567899999999999999977655555444332 2477899999999999887
Q ss_pred cCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCC-----CC------------EEEEEeCCCeEEEEECCCCe
Q 001367 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~------------~l~~~s~dg~i~iwd~~~~~ 611 (1091)
.-..+...+.|.+-.+.+.-..+.||. .++.++.|+|. .+ .+++|+.|+.|.||.....+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 766677889999998888889999999 89999999973 11 45669999999999998888
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
++.....-.. ..|..++|+|||..|++++.||+|.++.+...
T Consensus 316 Pl~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 7766543222 36899999999999999999999999998754
No 72
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.1e-27 Score=222.67 Aligned_cols=279 Identities=16% Similarity=0.239 Sum_probs=241.3
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 406 (1091)
+.+.+|...|.+|+|+-+|.+ ||+|+.|+++.+|++..++..... ...+|.+.|-.++|+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~ 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPK 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCC
Confidence 667899999999999999985 699999999999999988655431 2678999999999998
Q ss_pred CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc
Q 001367 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1091)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1091)
...++++++.|.+|++||+..+++... .....+ =..+.|+|+|+ +++.++.|..|.+.|.++.+.+...+ ...
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~---i~~~~e-ni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~ 148 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTAR---IETKGE-NINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF 148 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEE---eeccCc-ceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence 678999999999999999999987653 222223 34589999999 89999999999999998887776554 445
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1091)
.+..++|+. ++.+++.....|.|.|-.+...+....+..|.....|+.|+|+|+++++|+. +..+.+||+..--
T Consensus 149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi 222 (313)
T KOG1407|consen 149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI 222 (313)
T ss_pred eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence 677788863 4457777777899999999999999999999999999999999999999987 6779999999999
Q ss_pred eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC
Q 001367 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1091)
+++.+..+. -+|+.+.|+-+|++|++||+|..|-|=++++|..+..++..+. ...|+|+|...+||.+.+|
T Consensus 223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence 999999888 8999999999999999999999999999999999999987654 6899999999999988775
No 73
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4.5e-29 Score=231.75 Aligned_cols=286 Identities=14% Similarity=0.183 Sum_probs=253.8
Q ss_pred ecCCCccEEEEEECC---CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEE
Q 001367 392 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 392 ~~~h~~~V~~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1091)
..||+.+|..++||| +|-+|++++.|+.=.+-+-++|.-+. ++.||.+.|+......+.. ..++++.|=+.+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak 84 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK 84 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence 678999999999996 89999999999988777777776665 7899999999999988877 689999999999
Q ss_pred EEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc-eeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
|||.-+|..+++|. |...|.+++| +.|..+|++|+.++.++++|++..+. ...+..|.+.|..+.|....+.+++.
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999996 9999999999 55778999999999999999987654 55788999999999999999999887
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
.. ++.|++||.+++..++.+.... +|.++.++++|.++.++ ..+.|.+||..+..+++.+..+.. |.+
T Consensus 162 ad----d~tVRLWD~rTgt~v~sL~~~s----~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~n---V~S 229 (334)
T KOG0278|consen 162 AD----DKTVRLWDHRTGTEVQSLEFNS----PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCN---VES 229 (334)
T ss_pred cc----CCceEEEEeccCcEEEEEecCC----CCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccc---ccc
Confidence 54 6679999999999999998744 89999999998765554 567899999999999998877644 788
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeeccc-ccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAE 706 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d 706 (1091)
..++|+...+++|+.|..++.||..++..+... ++|.++|.|+.| +|+|...++|+.|
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF---------------------SPdGE~yAsGSED 288 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF---------------------SPDGELYASGSED 288 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEE---------------------CCCCceeeccCCC
Confidence 999999999999999999999999999988885 999999999999 8899999999999
Q ss_pred cccccccccccC
Q 001367 707 NKSEVEKPLFAR 718 (1091)
Q Consensus 707 ~~i~~w~~~~~~ 718 (1091)
|+||+|.....+
T Consensus 289 GTirlWQt~~~~ 300 (334)
T KOG0278|consen 289 GTIRLWQTTPGK 300 (334)
T ss_pred ceEEEEEecCCC
Confidence 999999976443
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=9.3e-28 Score=225.65 Aligned_cols=287 Identities=10% Similarity=0.089 Sum_probs=238.7
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
.|.||..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||++.|.|+..+.+.
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS 64 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence 4789999999999999998 889999999999999999999987 88999999999999999
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-----CCCcEEEEeCC-------CCc
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS 476 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~-------~~~ 476 (1091)
++|++|+.|.++++||+++|+++.. + ....+|..+.|+++|. +++.+. ..+.|.++|++ ..+
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 9999999999999999999986653 2 3456899999999999 444433 34679999987 456
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee-eecCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
+...+..+...++.+.|.+ -+++|++|..||.|.+||++++.... ....|...|+.+.+++|..++++++. +.
T Consensus 139 p~~kI~t~~skit~a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt 212 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGP--LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT 212 (327)
T ss_pred ceEEecCCccceeeeeecc--cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence 6788888889999999965 45799999999999999999976655 45778889999999999999999986 66
Q ss_pred EEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCe--EEEEECCCC------------eeEEEEeCCCC
Q 001367 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV--IKIWDMNKV------------QLLTTIDAGGG 621 (1091)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~--i~iwd~~~~------------~~~~~~~~~~~ 621 (1091)
+-.+||..+-+.++++.... +|++.+++|-..+++.|+.... |.-=..+.| +.+..+.+|
T Consensus 213 takl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-- 286 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-- 286 (327)
T ss_pred cceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--
Confidence 68999999999999998754 9999999999888888653322 222222222 333444444
Q ss_pred CCCCceEEEccCCCEEEEEECCCeEEEEECCC
Q 001367 622 LPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
..+|++++|+|+|+..++|+.||.|++.-...
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 45899999999999999999999999986553
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.2e-27 Score=223.17 Aligned_cols=286 Identities=13% Similarity=0.167 Sum_probs=239.2
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
.+.||+.+++.+.++.+|.+|.+|+.|.++.||-...|+.+. ++.||.+.|+++...-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999998887665 7889999999999999999 89999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEec-----CCeEEEEecC-------CCCceeeecCCCCcEEEEEEc
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS 538 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~s 538 (1091)
|+++|+++..++ ...+|..+.|++ +|.+++.... .+.|.++|++ ..++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999986 567899999965 4455555543 3569999987 344566777788899999999
Q ss_pred CCCCEEEEEecCCCCceEEEEEecCCce-eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001367 539 ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 539 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1091)
|-+++|++|.. ++.|.+||..+|. .+..-+.|. ..|+.++++++..++++++.|.+-++||..+-+.++++.
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99999999976 6669999999985 444445555 799999999999999999999999999999999999987
Q ss_pred CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC--------------CCCeecccccccccceeeeeccccccccccc
Q 001367 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP--------------ESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1091)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (1091)
... ++++.+++|-...++.|+.....-+=... ..+.+...++|-++|++++|
T Consensus 230 te~---PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAf----------- 295 (327)
T KOG0643|consen 230 TER---PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAF----------- 295 (327)
T ss_pred ecc---cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEE-----------
Confidence 654 58999999988777777653332222211 12456677899999999999
Q ss_pred cCCcccCCCCCCCCCccccccccccccccccc
Q 001367 684 ANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 684 ~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|+|+..++|+.||.||+..++
T Consensus 296 ----------hPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 296 ----------HPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ----------CCCCcccccCCCCceEEEEEec
Confidence 7889999999999999986654
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-26 Score=222.70 Aligned_cols=287 Identities=16% Similarity=0.248 Sum_probs=236.7
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
+..-.+.|.++.|+++|. ++++++.|.+++|||..+|+++.+ +..++-.|..+.|.....
T Consensus 10 f~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~ 69 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSN 69 (311)
T ss_pred cccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCc
Confidence 344566999999999999 557788999999999999998875 555677888999988887
Q ss_pred EEEEEEC--CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 410 LLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 410 ~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
.++.++. |.+|+.-++.+.+.++ -+.||...|+.++.+|-+. .+++++.|++|++||++..++...+.....+
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p 144 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP 144 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc
Confidence 7777776 7899999999987776 6889999999999999998 8999999999999999988888777655555
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCC--Cceeeec---CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
+. +| ++.|-++|++...+.|++||++.- ++...+. ........+.|||||++++.+.. .+.+++.|.
T Consensus 145 i~--Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDA 216 (311)
T KOG1446|consen 145 IA--AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDA 216 (311)
T ss_pred ce--eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEc
Confidence 54 55 567778888888889999999874 2222333 33557899999999999998875 667999999
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
-+|..+..+.++......-...+|+||++++++|+.||+|.+|++++|..+..+... ....+.++.|+|.-..+++++
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~- 294 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS- 294 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC-
Confidence 999999999988744444467889999999999999999999999999999999875 234688999999876676664
Q ss_pred CCeEEEEECC
Q 001367 643 ENRIKILETP 652 (1091)
Q Consensus 643 dg~i~iwd~~ 652 (1091)
..+.+|-..
T Consensus 295 -s~l~fw~p~ 303 (311)
T KOG1446|consen 295 -SNLVFWLPD 303 (311)
T ss_pred -ceEEEEecc
Confidence 467777544
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.5e-27 Score=232.98 Aligned_cols=282 Identities=20% Similarity=0.366 Sum_probs=233.0
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC---C
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---G 408 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g 408 (1091)
-|.+.|.++... ++ .+.+|+.||.++|||.. |+.... +.||.++|.+++|--- .
T Consensus 103 ~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~ 159 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSS 159 (423)
T ss_pred cchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCcc
Confidence 578899999998 44 46899999999999965 555543 7899999998888643 3
Q ss_pred CEEEEEECCCEEEEEEeeCCccc-ceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC--------------
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-------------- 473 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-------------- 473 (1091)
..+++++.|.++++|.++.++.. .......||...|.+++..++|. .+++|+.|.+|.||+.+
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhh
Confidence 46999999999999999887643 22223459999999999999999 89999999999999932
Q ss_pred -----------CCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCC
Q 001367 474 -----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR 542 (1091)
Q Consensus 474 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~ 542 (1091)
++.++-++.||..+|.++.|.. ...+++++.|.+|+.||+.+++....+.. +..+.++.++|..+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK 313 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc
Confidence 1234567889999999999965 35899999999999999999888776654 44789999999999
Q ss_pred EEEEEecCCCCceEEEEEecCCce---eeEEEecccccccceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCe-eEEEEe
Q 001367 543 RLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQ-LLTTID 617 (1091)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~s~dg~i~iwd~~~~~-~~~~~~ 617 (1091)
+|++++. +..+++||.+++. ..+.+.+|. +.|.++.|+|...+ |++++.|+++++||+++.+ ++..+.
T Consensus 314 Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 314 LLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred eeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 9999887 6679999998764 456677777 89999999998765 5669999999999999877 888888
Q ss_pred CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
.|.. .|.++.|+. +..+++|+.|.+|+|+...
T Consensus 387 ~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 387 GHND--KVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCc--eEEEEeccC-CceEEeccCcceEEEeccc
Confidence 7754 688999985 6689999999999998643
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=261.71 Aligned_cols=310 Identities=15% Similarity=0.194 Sum_probs=223.5
Q ss_pred heeeecc-cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 325 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 325 ~~~~~l~-~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
...+.+. .|.+.||++.||+||+ +||+|+.||.|+||.+...+...... -+. .|... . +. ..+.+..+.
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~---~~~-~~~~~-~---~~-~~s~~~p~~ 326 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAE---GDS-SCMYF-E---YN-ANSQIEPST 326 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccc---ccc-chhhh-h---hh-hccccCccc
Confidence 3445566 9999999999999998 67999999999999997754422100 000 00000 0 00 000011111
Q ss_pred ECC-----CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 404 WSP-----DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 404 ~sp-----dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
-++ .....-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|++++.|.+|++|++...+|+
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL 403 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL 403 (712)
T ss_pred cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence 111 11111112222222221111111123444788999999999999876 6999999999999999999999
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
..|. |..-|+|++|+|. |.+++++|+.||.|+||++...+...- ..-..-|++++|.|||+..++|+. +|.++
T Consensus 404 ~~F~-HndfVTcVaFnPv-DDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~----~G~C~ 476 (712)
T KOG0283|consen 404 KVFS-HNDFVTCVAFNPV-DDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTF----NGYCR 476 (712)
T ss_pred eEEe-cCCeeEEEEeccc-CCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEe----ccEEE
Confidence 9996 9999999999997 458999999999999999876554443 333468999999999999999987 67799
Q ss_pred EEecCCceeeEEEeccc-----ccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 559 EWNESEGAIKRTYQGLQ-----LQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 559 iwd~~~~~~~~~~~~~~-----~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
+|+....+....+.-+. .....|+.+.|.|... .+++.+.|..|||+|.++..++..+.+......-....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 99998877766554322 1123799999987543 58889999999999999999998888765555556788999
Q ss_pred CCCEEEEEECCCeEEEEECCCC
Q 001367 633 NGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 633 ~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
||++|+++++|..|++|+....
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCC
Confidence 9999999999999999998644
No 79
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.3e-27 Score=227.16 Aligned_cols=307 Identities=13% Similarity=0.197 Sum_probs=238.3
Q ss_pred CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccc
Q 001367 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEI 701 (1091)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~ 701 (1091)
...+.+.+|++||.++++|+.|..|+|+|++....... + +.+.
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~---~----------------------------------~em~ 154 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK---P----------------------------------KEMI 154 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc---h----------------------------------hhhc
Confidence 34688999999999999999999999999873311000 0 0000
Q ss_pred ccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCcc
Q 001367 702 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 781 (1091)
Q Consensus 702 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 781 (1091)
.+ .+.+...+......|...|..+.|.|....|++++.|++++++|+...... ...++
T Consensus 155 ~~--------------~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK--------rA~K~ 212 (430)
T KOG0640|consen 155 SG--------------DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK--------RAFKV 212 (430)
T ss_pred cC--------------CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHH--------HHHHH
Confidence 00 111111222222348899999999999999999999999999998654220 00111
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeC-CeEEEEEccCceeEEEec---CCCCCeEEEEEcCCCCcE
Q 001367 782 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNV 857 (1091)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~~~~~ 857 (1091)
+ ....+|.++.|+|.|.+|++|.+ ..+++||+.+.++...-. .|.+.|+++.+++ .+++
T Consensus 213 ~----------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~l 275 (430)
T KOG0640|consen 213 F----------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSL 275 (430)
T ss_pred h----------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccE
Confidence 1 15678999999999999999997 789999999999876653 4778999999999 8999
Q ss_pred EEEEeCCCeEEEEeccCcceeeeec-cccC-CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCC
Q 001367 858 IAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 935 (1091)
Q Consensus 858 la~g~~dg~i~iwd~~~~~~~~~l~-~h~~-~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 935 (1091)
.++|+.||.|++||--+++++.++. +|.+ .|.+..|+.+|+++++.|.|..+++|.+.++.....-.=....|...
T Consensus 276 YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~-- 353 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK-- 353 (430)
T ss_pred EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh--
Confidence 9999999999999999999998875 4654 79999999999999999999999999999976433221111112221
Q ss_pred CCceEEEEcCCCCEEEEE--ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 936 PSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 936 ~~i~~l~fs~dg~~la~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
--+...|+....+++.- ..+.+.-||.+++..+..+..+|++.+..+.-||.+.-++|++.|..+++|--.
T Consensus 354 -~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 354 -HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred -hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 34567788888888873 457899999999999999999999999999999999999999999999999643
No 80
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=6.1e-26 Score=254.60 Aligned_cols=288 Identities=12% Similarity=0.128 Sum_probs=222.7
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CCCEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 411 (1091)
|-..|....+++|+.. +++++.+..+..|+...|..+. +.............+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4457778888889763 4677777888889876664331 11111111111234789999999999999 89999
Q ss_pred EEEECCCEEEEEEeeCCcc----cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 412 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999987532 1234468899999999999998643 7999999999999999999999999999999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCc-EEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1091)
|.+++|++ ++.+|++++.|+.|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999965 6789999999999999999998887777777654 45678999988888887665567889999998754
Q ss_pred -eeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC
Q 001367 567 -IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 567 -~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
.......+. ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.
T Consensus 249 ~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence 333333222 24566678999999999887 59999999999998877655432 235678888884
No 81
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.6e-26 Score=226.80 Aligned_cols=285 Identities=20% Similarity=0.351 Sum_probs=235.1
Q ss_pred ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccC-CceEEEEEecCCeEEEEecC
Q 001367 439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE-NIHFIFSISVDGKIKAWLYD 517 (1091)
Q Consensus 439 ~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~ 517 (1091)
-|.+.|.++... ++ .+++|+.||.+++|| ..|+....+.||.++|.++++...+ ....+++++.|.++++|-++
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 588889888887 45 799999999999999 7799999999999999988875433 23469999999999999988
Q ss_pred CCCcee----eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC-------------------------ceee
Q 001367 518 SLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-------------------------GAIK 568 (1091)
Q Consensus 518 ~~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-------------------------~~~~ 568 (1091)
.+.... ...+|...|.++...++|..+++++. |.+|.+|+..+ +.++
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 766443 34588899999999999999999987 77899999221 2345
Q ss_pred EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEE
Q 001367 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1091)
..+.||. .+|.++.|++ ...+++++.|.+|+.||+.++..+..+.... ...++..+|..++|++|+.|..+++
T Consensus 254 vtl~GHt---~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 254 VTLEGHT---EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred EEecccc---cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceee
Confidence 5677777 9999999988 6789999999999999999999988876553 4688888888888888888888888
Q ss_pred EECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecC
Q 001367 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 728 (1091)
Q Consensus 649 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 728 (1091)
||.+++
T Consensus 327 ~DPR~~-------------------------------------------------------------------------- 332 (423)
T KOG0313|consen 327 WDPRTG-------------------------------------------------------------------------- 332 (423)
T ss_pred cCCCCC--------------------------------------------------------------------------
Confidence 875522
Q ss_pred CccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001367 729 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 808 (1091)
Q Consensus 729 ~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 808 (1091)
+|.
T Consensus 333 ---------------~gs-------------------------------------------------------------- 335 (423)
T KOG0313|consen 333 ---------------DGS-------------------------------------------------------------- 335 (423)
T ss_pred ---------------CCc--------------------------------------------------------------
Confidence 000
Q ss_pred ecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc-eeeeeccccCC
Q 001367 809 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEGHSKR 887 (1091)
Q Consensus 809 ~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~-~~~~l~~h~~~ 887 (1091)
-...++.+|.+.|.++.|+|.+...|++|+.|+++++||+++.+ ++..+.+|.+.
T Consensus 336 ------------------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK 391 (423)
T KOG0313|consen 336 ------------------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK 391 (423)
T ss_pred ------------------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence 01123445777888888998788899999999999999999987 89999999999
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 888 VTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 888 V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
|.++.|+ ++.+++|||.|.+|+|+.-.
T Consensus 392 vl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 392 VLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999998 56799999999999998654
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.1e-26 Score=260.91 Aligned_cols=304 Identities=17% Similarity=0.234 Sum_probs=238.0
Q ss_pred ccccEEEEEEecCCCeEEEee--cCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEe
Q 001367 732 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 809 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 809 (1091)
+...|.++..+|||..+++++ .||.+++|+...-.. ....++..-...+.+. ..|.+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~m----~~h~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCTM----DDHDGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhheee----ccccCceeEEEE
Confidence 455689999999999999999 789999998653211 0111222111111111 249999999999
Q ss_pred cCCCCEEEEEeC-CeEEEEEccC------------------ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001367 810 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 870 (1091)
Q Consensus 810 s~dg~~la~~~d-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iw 870 (1091)
+|||++||+|+| +.|.||+... +++...+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 999999999995 6789998762 346778899999999999999 89999999999999999
Q ss_pred eccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEE
Q 001367 871 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 950 (1091)
Q Consensus 871 d~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~l 950 (1091)
+..+.+.+.++.+|.+.|..+.|.|-|+||||-+.|++|+||++.+..+.+ .+..+..+.........+.|||||++|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999987754332 444444444444568899999999999
Q ss_pred EEE--ec---CeEEEEEcCCcceeeeeecCCccCEEEEEEeeC--------C-----C----EEEEEEcCCcEEEEeCCC
Q 001367 951 LLV--HE---THLAIYEAEELTCLKQWFPISSVPISQATFSCD--------C-----R----MVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 951 a~~--~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~d--------g-----~----~l~t~~~dg~v~iwd~~~ 1008 (1091)
++. .. ..+.|.+-.+-+.-.. +.||.+++..++|+|. | . .+|+|+.|++|.||....
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 983 22 3688888766555555 5689999999999981 1 1 578999999999999977
Q ss_pred CceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1009 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
.+.+..+. +..+.. .+.++|+| ||..|.+++.||+|.+..+.+.+
T Consensus 314 ~RPl~vi~-------~lf~~S--I~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 314 PRPLFVIH-------NLFNKS--IVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCchhhhh-------hhhcCc--eeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 66652222 111222 35789999 59999999999999999998765
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=259.03 Aligned_cols=284 Identities=17% Similarity=0.296 Sum_probs=248.8
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.|...+.+..|. ++ .+++|+.|++|++||..++..+... +.||.+.|.+++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~~------------------l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILTR------------------LVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEee------------------ccCCCCCceeEEEecCCCEE
Confidence 466689999999 55 3699999999999999999877541 77999999999999989999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1091)
++|+.|.++++||..+|++.. .+.+|...|.++...+. ++++|+.|.+|++|++.++.++..+.+|.++|+++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999998777 78899999999987653 68889999999999999999999999999999999
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc-eeeEE
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT 570 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 570 (1091)
... +.++++|+.|++|++||+.+.+....+.+|...|.++.+.+. ..+++++. +..|++||+.+. +++..
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 884 569999999999999999999999999999999999988766 88888887 567999999999 99999
Q ss_pred EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEE
Q 001367 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1091)
Q Consensus 571 ~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1091)
+.+|. ..+..+.+ .++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.+|.+++||
T Consensus 409 l~~h~---~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 409 LQGHT---SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred hcCCc---cccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99988 66655544 5789999999999999999999999999874 22346666665 46789999999999999
Q ss_pred CCCCCeeccc
Q 001367 651 TPESNSVDAA 660 (1091)
Q Consensus 651 ~~~~~~~~~~ 660 (1091)
+.++.....+
T Consensus 481 l~~~~~~~~l 490 (537)
T KOG0274|consen 481 LRSGTLIRTL 490 (537)
T ss_pred cccCchhhhh
Confidence 9999777665
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.2e-27 Score=218.56 Aligned_cols=285 Identities=17% Similarity=0.245 Sum_probs=227.0
Q ss_pred cEEEEEcC--CCceEEEEEc-----CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC-C
Q 001367 337 PMSMDFHP--VQHTLLLVGT-----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 408 (1091)
Q Consensus 337 V~~v~fsp--dg~~llasg~-----~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g 408 (1091)
=.++.||| +++..+|++. ..|++.|-++..++-+.. +.-+ .-+..+..++||++ .
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHE 73 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCc
Confidence 36789999 4443334433 248899999875554432 1111 24578999999995 5
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
..+++++.||+++|||+... -.++..++.|...|.++.|++-.++ .+++++.|++|++|+...+.-++++.+|...|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI 150 (311)
T ss_pred ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence 67888999999999995543 3455578899999999999998776 67777999999999999999999999999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCC-CEEEEEecCCCCceEEEEEecCCc-e
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEG-A 566 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~-~ 566 (1091)
+..+|+|. ...++++++.|+++++||++.......+..|...+.++.|+.-. ..+++++. ++.|+.||++.- .
T Consensus 151 y~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 151 YQAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRT 225 (311)
T ss_pred EEEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhccc
Confidence 99999986 45699999999999999999988888899999999999999855 55556654 778999999864 4
Q ss_pred eeEEEecccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-eeEEEEeCCCCCCCCceEEEcc-CCCEEEEEECC
Q 001367 567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLLAVIANE 643 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~d 643 (1091)
++..+.+|. -.|+.+.|+|.. ..|++++.|-+++|||...+ ..+.+...|.. .+..+.|++ ++.++|+.+.|
T Consensus 226 pl~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 226 PLFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred cceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccc
Confidence 567777777 899999999975 46677999999999998854 34444444433 567788887 67899999999
Q ss_pred CeEEEEEC
Q 001367 644 NRIKILET 651 (1091)
Q Consensus 644 g~i~iwd~ 651 (1091)
+.++||+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 99999983
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=235.85 Aligned_cols=284 Identities=15% Similarity=0.216 Sum_probs=233.3
Q ss_pred ccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC
Q 001367 732 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 811 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 811 (1091)
..+.|.+++|+|...+=++.+..-.+.+|+...... ... + ......+.++.|-.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~----------------------~k~--~--srFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV----------------------RKT--F--SRFKDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhh----------------------hhh--H--HhhccceeEEEeec
Confidence 457899999999877666666666777776432110 000 0 12567899999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEE
Q 001367 812 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 890 (1091)
Q Consensus 812 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 890 (1091)
||+++|+|+ .|.|+|||+.+...++.+.+|..++..+.|+|+++..+++|++|+.+++||+.++.....+.+|++.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999998 5999999988877889999999999999999999999999999999999999999887789999999999
Q ss_pred EEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCccee
Q 001367 891 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 969 (1091)
Q Consensus 891 l~~spd-g~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~ 969 (1091)
.+|+|- +.+++|||.||.|++||+.... .+......| .+|..+.|-|.|..+|++....++|||+.+|...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999985 5689999999999999998743 223333333 2699999999999999999999999999976655
Q ss_pred eeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEe
Q 001367 970 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1049 (1091)
Q Consensus 970 ~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~ 1049 (1091)
......|...|+|+++..|++.|++++-||.|++||+.+-+.+..+.. +. .| ++++.+| |++.++.|.
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~~-----pv--Lsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY----PG-----PV--LSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec----cc-----ce--eeEEecC-CCceEEEec
Confidence 544555999999999999999999999999999999999888877761 22 23 4567788 579999999
Q ss_pred cCCcEEEEecCC
Q 001367 1050 TNGEVYVIEPNE 1061 (1091)
Q Consensus 1050 ~dg~v~~w~~~~ 1061 (1091)
.||.+.+=+...
T Consensus 299 snGlv~~rr~~~ 310 (487)
T KOG0310|consen 299 SNGLVSIRRREV 310 (487)
T ss_pred ccceeeeehhhc
Confidence 999988775543
No 86
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=9.4e-27 Score=238.25 Aligned_cols=309 Identities=18% Similarity=0.233 Sum_probs=241.3
Q ss_pred cCCCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCcc
Q 001367 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1091)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 398 (1091)
+..+|..+-..|.+|+..|.++++.|.|.+ +++|+.|.+|++||++....... .|+ .+.......
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~ 216 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQ 216 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCcccccc
Confidence 345677888889999999999999999985 59999999999999976543321 122 123345678
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEeeCCcc---------cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEE
Q 001367 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1091)
|.+++||+.|..|++.+....++|+|-...+. ++-...-+||...+++.+|+|+.+. .++|++.||+++|
T Consensus 217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRI 295 (641)
T ss_pred cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEE
Confidence 99999999999999999888999999765432 2223345689999999999999987 7999999999999
Q ss_pred EeCCCCc-eeEEe-----cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee---eecCCCC--cEEEEEEc
Q 001367 470 WDAVTGS-RTYSF-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL--GCTRMAYS 538 (1091)
Q Consensus 470 wd~~~~~-~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~--~i~~~~~s 538 (1091)
||+...+ .++.+ .+..-++++++| ++++..|++|..||.|.+|+........ .-..|.. .|+|+.||
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 9988653 23333 233456777778 6688899999999999999975543322 3334544 89999999
Q ss_pred CCCCEEEEEecCCCCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCCCEEEEEe------CCCeEEEEECCCCe
Q 001367 539 ANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQ 611 (1091)
Q Consensus 539 ~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s------~dg~i~iwd~~~~~ 611 (1091)
+||++|++-+. +..+++||++.. +++....+.. ....-+.++|+|+.+.|++|. ..|++++||..+..
T Consensus 374 ~dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 374 YDGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred cccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99999998775 667999999865 4455544433 124556789999999999975 45789999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
.+..+.... ..|..+.|+|.-+.|.+|+.||++++|--.
T Consensus 449 ~v~ki~i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 449 TVYKIDIST--ASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eEEEecCCC--ceEEEEeecchhhheeeecCCCceEEEECc
Confidence 998887663 368899999999999999999999998544
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.1e-26 Score=245.22 Aligned_cols=280 Identities=18% Similarity=0.264 Sum_probs=240.8
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
...-+.||..+ +||+|.. ..|.+|+..++..... ..-++..|+++.|+++|.+||+|.
T Consensus 179 Y~nlldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~ 236 (484)
T KOG0305|consen 179 YLNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGT 236 (484)
T ss_pred hhhHhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEee
Confidence 34457888665 4577653 6899999999986543 222478999999999999999999
Q ss_pred CCCEEEEEEeeCCcccceeEEEec-cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE-ecCCCcceEEEee
Q 001367 416 SKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCP 493 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~ 493 (1091)
.+|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|+...+.... +.+|...|..+.|
T Consensus 237 ~~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw 309 (484)
T KOG0305|consen 237 SDGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW 309 (484)
T ss_pred cCCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE
Confidence 99999999999876665 5667 99999999998 34 789999999999999998876655 8899999999999
Q ss_pred cccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcC-CCCEEEEEecCCCCceEEEEEecCCceeeEEEe
Q 001367 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1091)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1091)
++|+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|++ ..|+.|++||..++..+....
T Consensus 310 --s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vd 385 (484)
T KOG0305|consen 310 --SPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVD 385 (484)
T ss_pred --CCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccc
Confidence 55778999999999999999988899999999999999999999 5567777765 458899999999999988877
Q ss_pred cccccccceEEEEEcCCCCEEEE--EeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEE
Q 001367 573 GLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1091)
Q Consensus 573 ~~~~~~~~v~~v~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1091)
.. ..|.++.|++..+-+++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|+
T Consensus 386 tg----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 386 TG----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cC----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEecc
Confidence 63 48999999999887777 55778999999999999999988766 699999999999999999999999999
Q ss_pred CCCC
Q 001367 651 TPES 654 (1091)
Q Consensus 651 ~~~~ 654 (1091)
+-..
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 8654
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.6e-25 Score=215.04 Aligned_cols=271 Identities=16% Similarity=0.190 Sum_probs=228.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC--CCcEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 469 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~--d~~i~i 469 (1091)
+..-...|.++.|+++|.+|++++.|.+++|||..+|+.++ ++..+...|..++|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 55567899999999999999999999999999999997666 5666777899999988877 4555554 889999
Q ss_pred EeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
-++.+.+.++.|.||...|++++.+|.+ ..+++++.|++|++||++..++...+.....++ .+|.|.|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence 9999999999999999999999997765 689999999999999999888887776666555 789999999998865
Q ss_pred CCCCceEEEEEecCCc--eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCC-c
Q 001367 550 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P 626 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~ 626 (1091)
...|.+||++.- .+...+.-..........+.|+|||++++.+...+.+++.|.-+|..+..+..+.....+ .
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 337999999863 344454443223467899999999999999999999999999999999988876543222 4
Q ss_pred eEEEccCCCEEEEEECCCeEEEEECCCCCeeccccc-ccccceeeeeccc
Q 001367 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPI 675 (1091)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~ 675 (1091)
..+|+||++++++|+.||+|.+|+++++..+..+.+ +..++.++.|+|.
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 678999999999999999999999999999988888 5788888888654
No 89
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=7.7e-26 Score=212.21 Aligned_cols=255 Identities=16% Similarity=0.242 Sum_probs=214.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|...|.+++|+.+|.+||+|+.|+++.+|++...+..+. ....+|.+.|..++|.|.... .+++++.|.+|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 567999999999999999999999999999999998754433 356799999999999997766 789999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+.++++........+.+. ++| +++|.+++.++.|..|.+.|.++.+....... ...+..++|+-++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 999999998876655554 345 56788999999999999999887665544332 23566788887777666553
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
|.|.|.|.....-+++..++.|. ....|+.|+|+|+++++|+.|..+.+||++..-+++.+....- +|..+.|+
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS 240 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFS 240 (313)
T ss_pred -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEec
Confidence 36779999888889999999988 8889999999999999999999999999999888888876655 69999999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCCeecccc
Q 001367 632 KNGTLLAVIANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
.||++||+++.|..|-|=++++|..+..++
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEee
Confidence 999999999999999998888886665543
No 90
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=9.2e-27 Score=238.30 Aligned_cols=313 Identities=16% Similarity=0.176 Sum_probs=226.3
Q ss_pred ccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEE
Q 001367 659 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR 738 (1091)
Q Consensus 659 ~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~ 738 (1091)
.+.+++..|.++++ .|.|..+++|+.|.+|++||+..-...... ++.-.......|.+
T Consensus 162 ~l~hgtk~Vsal~~---------------------Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr~l~P~E~h~i~s 219 (641)
T KOG0772|consen 162 QLKHGTKIVSALAV---------------------DPSGARFVSGSLDYTVKFWDFQGMDASMRS-FRQLQPCETHQINS 219 (641)
T ss_pred eccCCceEEEEeee---------------------cCCCceeeeccccceEEEEecccccccchh-hhccCcccccccce
Confidence 35567777777777 788899999999999999998743322111 22222225667888
Q ss_pred EEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEE
Q 001367 739 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 818 (1091)
Q Consensus 739 ~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 818 (1091)
+.|++.|..|++.+.....+|+|- ||..++-
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DR-------------------------------------------------dG~~~~e 250 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDR-------------------------------------------------DGFEIVE 250 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEcc-------------------------------------------------CCceeee
Confidence 889998888888887777777652 3333333
Q ss_pred EeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc-eeeeec-----cccCCeEEEE
Q 001367 819 ASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLE-----GHSKRVTGLV 892 (1091)
Q Consensus 819 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~-~~~~l~-----~h~~~V~~l~ 892 (1091)
...|.-+|-|+. .-++|...+++.+|+|+....+.+++.||+++|||+...+ .+..++ +..-+++.++
T Consensus 251 ~~KGDQYI~Dm~------nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 251 FSKGDQYIRDMY------NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCA 324 (641)
T ss_pred eeccchhhhhhh------ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeee
Confidence 333333444443 2346888999999999888899999999999999998753 223332 2345789999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeee
Q 001367 893 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ 971 (1091)
Q Consensus 893 ~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~ 971 (1091)
|++||+++|.|..||.|.+|+..+..... .+.....|.. ...|++++||+||++|++ +.|+++++||++..+....
T Consensus 325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 325 WNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred cCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhhhccCCCceeeeeccccccchh
Confidence 99999999999999999999986543222 2233333332 136999999999999999 8999999999987654322
Q ss_pred eecCC--ccCEEEEEEeeCCCEEEEEEc------CCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCC
Q 001367 972 WFPIS--SVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1043 (1091)
Q Consensus 972 ~~~~h--~~~v~~v~fs~dg~~l~t~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1043 (1091)
...+- ..+-+.++||||.++|+||.. .|.+.+||..+.+.+.++... ....+.+.|+|. =+
T Consensus 402 ~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~----------~aSvv~~~Whpk-LN 470 (641)
T KOG0772|consen 402 VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS----------TASVVRCLWHPK-LN 470 (641)
T ss_pred hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----------CceEEEEeecch-hh
Confidence 22221 456678999999999999874 478999999999998887622 123456789994 67
Q ss_pred eEEEEecCCcEEE-EecCCC
Q 001367 1044 QFAVGLTNGEVYV-IEPNEP 1062 (1091)
Q Consensus 1044 ~l~~g~~dg~v~~-w~~~~~ 1062 (1091)
++.+|+.||++++ ||...+
T Consensus 471 Qi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 471 QIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred heeeecCCCceEEEECcccc
Confidence 8999999999986 455443
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.5e-26 Score=230.47 Aligned_cols=293 Identities=14% Similarity=0.187 Sum_probs=235.2
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEec----cccccceeeeeecCCCccEEEE
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI----GACSMLFKTALVRDPGVSVNRV 402 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l 402 (1091)
.+.+..|.-.|.||+++||++ ...+++.+|+|.=|++.+|+.... +|.- +....+++..- ++|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 466788989999999999998 569999999999999999986521 1111 11112222222 4899999999
Q ss_pred EECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec
Q 001367 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1091)
+.|+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|..|++|+++....+.++-
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999988776 6889999999999987666 68999999999999999999999999
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
+|...|.++.... -.+.+-+|+.|+++++|++ .......+.++.+.+.|++|-.+. .+++|+. +|.|.+|++
T Consensus 284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSL 355 (479)
T ss_pred CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeee
Confidence 9999999987643 3355666679999999999 445566777888899999997654 5667765 777999999
Q ss_pred CCceeeEEEecc-ccc--------ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeEEEEeCCCCCCCCceEE
Q 001367 563 SEGAIKRTYQGL-QLQ--------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 563 ~~~~~~~~~~~~-~~~--------~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~ 629 (1091)
...+++.+.... ... ...|++++..|..+.+++|+.+|.|++|-+..+ .++..++.. ..|+.++
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~ 432 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLA 432 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEE
Confidence 998887765432 111 127999999999999999999999999998877 444555443 3589999
Q ss_pred EccCCCEEEEEE
Q 001367 630 FNKNGTLLAVIA 641 (1091)
Q Consensus 630 ~s~~~~~l~~~~ 641 (1091)
|+++|+.+++|.
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999776663
No 92
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-25 Score=215.57 Aligned_cols=276 Identities=18% Similarity=0.235 Sum_probs=219.3
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCC-CCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
-.+.|.+++|||....+++.||-||+|++|+++. |..+. +....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 3569999999996666888999999999999987 33332 1245699999999999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1091)
++|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+..|+||+.|++|+.||.+...++.++. -.+.++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998533 46789999999999887766689999999999999999999888886 55677777
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeec--CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc--ee
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AI 567 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~ 567 (1091)
.. --.+++.+..++.|.+|++++....+... .-.-.+.|++..+|....+.|+- +|.+.+..+..+ +.
T Consensus 163 Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 54 22488999999999999997765444322 12336788998888887787775 555777666665 44
Q ss_pred eEEEeccccc------ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 568 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 568 ~~~~~~~~~~------~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
-..|+.|... ...|++++|+|.-..|++++.||++.+||-+....+...+.+.. +|.+++|+.+|.++|-+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 4455555521 23578899999999999999999999999888777777665544 799999999999887653
No 93
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.3e-26 Score=218.95 Aligned_cols=298 Identities=16% Similarity=0.247 Sum_probs=246.4
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
..+.+.+.||++.||.++-..... ++.+++.|.+.+||.+++|.++.. +.||.+.|.+++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 456778899999999999988776 889999999999999999999976 789999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEe------eC--------Cc----------------------c-cceeEEEeccccCeeE
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAY------HG--------GS----------------------D-ARQQLEIDAHVGNVND 446 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~------~~--------~~----------------------~-~~~~~~~~~h~~~v~~ 446 (1091)
|++.+.++++++.|++..||.. .. ++ . ..++..+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 11 00 0 1124568899999999
Q ss_pred EEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec
Q 001367 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1091)
Q Consensus 447 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1091)
..|...|+ .+++++.|.+..+||+++|+.+..+.||....+.++-+| ..+++++.+.|.+.++||++.
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFRe-------- 345 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFRE-------- 345 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchh--------
Confidence 99999999 699999999999999999999999999999999888765 447888899999999998752
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001367 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd 606 (1091)
.| ..+..|+||. ..|+++.|..+ ..+++|++|.+|++||
T Consensus 346 ----aI---------------------------------~sV~VFQGHt---dtVTS~vF~~d-d~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 346 ----AI---------------------------------QSVAVFQGHT---DTVTSVVFNTD-DRVVSGSDDRTVKVWD 384 (481)
T ss_pred ----hc---------------------------------ceeeeecccc---cceeEEEEecC-CceeecCCCceEEEee
Confidence 11 1234577777 89999999875 5689999999999999
Q ss_pred CCCC-eeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeec----ccccccccceeeeeccccccccc
Q 001367 607 MNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD----AAGVLSDNLRKLSVNPISTVTGA 681 (1091)
Q Consensus 607 ~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~ 681 (1091)
+++. .++.++.... .++.++.+..++.++.--++..|++||+...+..+ ..++|...|.|++|...
T Consensus 385 LrNMRsplATIRtdS---~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee------ 455 (481)
T KOG0300|consen 385 LRNMRSPLATIRTDS---PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE------ 455 (481)
T ss_pred eccccCcceeeecCC---ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc------
Confidence 9875 4566776543 57899999988899999999999999998775433 34688889999999643
Q ss_pred cccCCcccCCCCCCCCCcccccccccccccccccc
Q 001367 682 GIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 682 ~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~ 716 (1091)
.| -..+++++.|..+.-|++..
T Consensus 456 ------------hp-~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 456 ------------HP-ACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ------------Cc-ccccccccccceeeeeEecc
Confidence 22 25578889999998898763
No 94
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=216.87 Aligned_cols=311 Identities=13% Similarity=0.164 Sum_probs=233.5
Q ss_pred ecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccccccccc--CCcccceeecCCccccc
Q 001367 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFA--RPSECQSLLLPSKVKAN 734 (1091)
Q Consensus 657 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~--~~~~~~~~~~~~~~~~~ 734 (1091)
+..+++|...|++++| +.||+.+++++.|++|++|++.-- ...++..... ..+
T Consensus 79 ~~~LKgH~~~vt~~~F---------------------sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~d 133 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAF---------------------SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EYD 133 (420)
T ss_pred hhhhhccCCceeeeEE---------------------cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cCC
Confidence 3467899999999999 889999999999999999997531 1122222222 234
Q ss_pred cEEEEEEecCCCeEEEee-cCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCC
Q 001367 735 KISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 813 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 813 (1091)
..+.++|+||-+.++... ....+++|.+...+. |... ....-||-.. + ...|.-.+..+-+..++
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~--~~~v~~D~~~--------f-~~kh~v~~i~iGiA~~~ 199 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGS--HHFVHIDNLE--------F-ERKHQVDIINIGIAGNA 199 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCC--cccccccccc--------c-chhcccceEEEeecCCc
Confidence 678899999988766555 457899998654321 1111 1111122110 1 01366777888888999
Q ss_pred CEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEecc---Cc-----ceeeeeccc
Q 001367 814 AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR---SS-----EVISKLEGH 884 (1091)
Q Consensus 814 ~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~---~~-----~~~~~l~~h 884 (1091)
++|++++ |..|.+|++. |+.+..+......-+..+.|| +|+++|+++-.-.|++|.+- .| ..+..|.||
T Consensus 200 k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH 277 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH 277 (420)
T ss_pred eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence 9999998 7889999998 999998887777788899999 99999999988899999873 23 235678999
Q ss_pred cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee--eeeeeeccCCC-cCCCCCceEEEEcCCCCEEEEEecCeEEEE
Q 001367 885 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--TCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLLVHETHLAIY 961 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~--~~~~~~~~~~~-~~~~~~i~~l~fs~dg~~la~~~d~~i~vw 961 (1091)
.+.|.+++||++...++|+|.||+++|||++-.... ....++..... .........++.||.|+.||++....+++|
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVF 357 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEE
Confidence 999999999999999999999999999998742211 11122222100 001123448999999999999999999999
Q ss_pred EcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 962 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 962 d~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
..++|+....+...|...|++++|++||++++|++ |..+++..-..|
T Consensus 358 ~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 358 ASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred EcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 99999988888888999999999999999999985 778988864333
No 95
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.5e-26 Score=248.46 Aligned_cols=277 Identities=15% Similarity=0.196 Sum_probs=211.0
Q ss_pred cccccEEEEEEecCCCeEEEeecCceEEEeecCCccc------c------------------cccceeecc---------
Q 001367 731 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LSTEATTKV--------- 777 (1091)
Q Consensus 731 ~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~------~------------------~~~~~~~~~--------- 777 (1091)
.|.+.|.++.||+||++|++++.||.|+||.+-..+. . .........
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4899999999999999999999999999999876211 0 000000000
Q ss_pred -CCccccCCCCCceeeec-CCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCC
Q 001367 778 -PPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 855 (1091)
Q Consensus 778 -~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 855 (1091)
...+....... +.... ....||...|..+.||.++-+|-+.-|.+|++|++...++++.|. |...|+|++|+|-|.
T Consensus 345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCcccc-ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 00011111000 00000 112479999999999988755555459999999999999999998 999999999999999
Q ss_pred cEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCC
Q 001367 856 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 935 (1091)
Q Consensus 856 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 935 (1091)
+|+++|+-||.|+||++...+.+.-..-+ .-|++++|+|||++.+.|+.+|.+++|+....+......+....+.....
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999987765444434 77999999999999999999999999999987766555555554444333
Q ss_pred CCceEEEEcCCCC--EEEEEecCeEEEEEcCCcceeeeeecCC-ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCc
Q 001367 936 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 936 ~~i~~l~fs~dg~--~la~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
..|+.+.|.|... .|+++.|..|+|||..+...+..+...| ...-....|+.||++|+++++|..|++|++....
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 4799999987544 7888999999999998777777755444 2334667899999999999999999999985443
No 96
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.2e-24 Score=244.33 Aligned_cols=237 Identities=10% Similarity=0.095 Sum_probs=184.5
Q ss_pred ecCCCccEEEEEECCC-CCEEEEEECCCEEEEEEeeCCcc-c----ceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC
Q 001367 392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~-~----~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1091)
+.+|...|.+++|+|+ +.+||+|+.|++|+|||+.++.. . .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence 7899999999999996 89999999999999999986532 1 123357799999999999999874 567999999
Q ss_pred cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEE-----EEEcCC
Q 001367 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN 540 (1091)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~-----~~~s~d 540 (1091)
+|+|||+.+++.+..+. |...|.+++|++ +|.+|++++.|+.|++||++++.....+..|.+.+.. ..|+++
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999998887775 667899999954 6789999999999999999998888888888765432 345689
Q ss_pred CCEEEEEecCCCCceEEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001367 541 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 541 ~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1091)
+.++++++.++..++.|++||++. ++++..+..+. ....+......+++.++++|+.|+.|++|++..+. +..+...
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~ 303 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY 303 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence 999999887655556899999985 55555543322 12333444445568888899999999999998774 3333333
Q ss_pred CCCCCCceEEEccCC
Q 001367 620 GGLPENPRICFNKNG 634 (1091)
Q Consensus 620 ~~~~~v~~v~~s~~~ 634 (1091)
....++.+++|.|..
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 333467889999864
No 97
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=2.1e-25 Score=237.18 Aligned_cols=284 Identities=18% Similarity=0.297 Sum_probs=241.6
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE-EE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VV 403 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~ 403 (1091)
.+.+.|.||+..|..+++.++. .+++++.||++++|+-..++.+.... +.+|.+-|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~~-----------------~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETHA-----------------FEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCccccccee-----------------cccCcceeeccce
Confidence 4668899999999999998887 36899999999999987776664322 5567787777 88
Q ss_pred ECC-CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec
Q 001367 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1091)
+-+ ++.+|++|+.|++|.+|...+...+. .+.+|...|.+++...++. +++||.|.++++|- .+++...+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~ 137 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ 137 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence 875 66679999999999999999987665 7889999999999887775 89999999999994 567778899
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
+|+..|++++..+.. .+++|+.|++|++|. .++...++.+|..-|..+++-+++.+ ++|+. ++.|+.|++
T Consensus 138 gH~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsN----Dg~Ir~w~~ 207 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSN----DGSIRLWDL 207 (745)
T ss_pred CcchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecC----CceEEEEec
Confidence 999999999886543 899999999999994 47788889999999999999888765 46654 778999998
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
+|+.+..+.+|. .-+.++....++..++++++|++++||+.. ++.+.+..+.. .|+++.+-++|. +++|+.
T Consensus 208 -~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 208 -DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred -cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEecc
Confidence 888999999998 899999988888999999999999999976 77777776654 588888888776 888999
Q ss_pred CCeEEEEECCCC
Q 001367 643 ENRIKILETPES 654 (1091)
Q Consensus 643 dg~i~iwd~~~~ 654 (1091)
||.|+||.....
T Consensus 279 DG~VrVfT~~k~ 290 (745)
T KOG0301|consen 279 DGRVRVFTVDKD 290 (745)
T ss_pred CceEEEEEeccc
Confidence 999999987744
No 98
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=231.71 Aligned_cols=285 Identities=17% Similarity=0.234 Sum_probs=239.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 66799999999999999999999999999999998876 223336778888999999999999 789999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+...+...++.+|...|+++.|.-.. ..+++|+.|.+|++||+....+..++.. ...+..++.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeeccc--
Confidence 99999999999999999999986543 3499999999999999998666554332 2334444444 445556654
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC--CCCCceEE
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC 629 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 629 (1091)
+..|+.||+++..+......+. .|+++..++++..+++.+.|.++.+.|+.+.+....+...+. ....+.+.
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg----~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG----RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc----ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 5569999999999988887744 899999999999999999999999999999998888875432 23478899
Q ss_pred EccCCCEEEEEECCCeEEEEECCCCCeeccccccccc--ceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
|||++.|+++|+.||.|+||++.+++....+...... |++++| .|.|..+++++.++
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W---------------------~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW---------------------NPSGSGLLSADKQK 453 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE---------------------cCCCchhhcccCCc
Confidence 9999999999999999999999999888777766555 999999 66678889999999
Q ss_pred cccccc
Q 001367 708 KSEVEK 713 (1091)
Q Consensus 708 ~i~~w~ 713 (1091)
.+.+|.
T Consensus 454 ~v~lW~ 459 (459)
T KOG0288|consen 454 AVTLWT 459 (459)
T ss_pred ceEecC
Confidence 998883
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.2e-26 Score=238.62 Aligned_cols=295 Identities=18% Similarity=0.217 Sum_probs=238.1
Q ss_pred cCCCCcE---EEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 332 EGSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 332 ~h~~~V~---~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
.|...|. ++..++.+.++|.+|+.||.|++|++..-..... .+ -...+..|...|..++...+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~ 85 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNG 85 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCC
Confidence 4444555 5666655444789999999999999865433211 00 011266799999999999999
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEE-cCCCCceEEEEeeCCCcEEEEeCCCC--ceeEE-----
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTG--SRTYS----- 480 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~-s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~~~----- 480 (1091)
+-|++++.|.+|++|+...+.. ....+++.|...|.|+++ .++.. ++++||.|+.|.+||+.+| +.+.+
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~~-~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDNT-FCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred CceEEecCCceEEEeecccCcc-hhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 9999999999999999988741 222367889999999999 66666 8999999999999999988 33322
Q ss_pred ---ec-CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 481 ---FE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 481 ---~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
+. |+..+|++++. ++.|..+++|+..+.+++||.++.+....+.+|...|..+..++||+.+++++. +++
T Consensus 163 ~~sl~sG~k~siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----Dgt 236 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGT 236 (735)
T ss_pred cccCCCCCccceeeeec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----Cce
Confidence 22 78889999988 456689999999999999999999999999999999999999999999999986 778
Q ss_pred EEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCE
Q 001367 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1091)
|++||+...+++.++..|. ..|.++..+|+-.++++|+.||.|+.=|+.+......+-...+ +|..+..+...+-
T Consensus 237 IrlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~ 311 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNS 311 (735)
T ss_pred EEeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCC
Confidence 9999999999999999988 7799999999999999999999999999988533332222222 4677777765555
Q ss_pred EEEEECCCeEEEEECCC
Q 001367 637 LAVIANENRIKILETPE 653 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~ 653 (1091)
+-+++.|+.|+-|....
T Consensus 312 ~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 312 VWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ceeeeccccceecCCcc
Confidence 68888999999997653
No 100
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.8e-26 Score=226.28 Aligned_cols=293 Identities=11% Similarity=0.153 Sum_probs=233.2
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
+-+..|.||.+.|.|++=+|..-..+|+|+.||.|+|||+.+..++.. +..|.+.|..+++
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v 117 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICV 117 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEe
Confidence 344567999999999999998844689999999999999999888765 7789999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
.. ..+++++.|.+|+.|.+... ..+ ++.+ ...+..+.-+..+. .++|||. .|.|||.....+++.+.-.
T Consensus 118 ~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG 186 (433)
T KOG0268|consen 118 TQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWG 186 (433)
T ss_pred cc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecC
Confidence 87 77889999999999998873 222 3333 23455666655556 6888886 4899999999999999888
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
...|.++.|+|... ..|++++.|+.|.+||++....+..... ......++|+|.+-.++++.. |..++.+|++.
T Consensus 187 ~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E----D~nlY~~DmR~ 260 (433)
T KOG0268|consen 187 ADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE----DHNLYTYDMRN 260 (433)
T ss_pred CCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc----cccceehhhhh
Confidence 88999999988754 5889999999999999999887765432 224567899995555555543 77799999875
Q ss_pred c-eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC
Q 001367 565 G-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1091)
Q Consensus 565 ~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1091)
- .++..+.+|. ..|..+.|+|.|+-+++||.|.+|+||..+.+..-..... .....|.++.||.|.+++++|++|
T Consensus 261 l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 261 LSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDD 336 (433)
T ss_pred hcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCC
Confidence 4 3455555555 8999999999999999999999999999987765433322 223468999999999999999999
Q ss_pred CeEEEEECCCCCee
Q 001367 644 NRIKILETPESNSV 657 (1091)
Q Consensus 644 g~i~iwd~~~~~~~ 657 (1091)
+.|++|.....+.+
T Consensus 337 ~nvRlWka~Asekl 350 (433)
T KOG0268|consen 337 GNVRLWKAKASEKL 350 (433)
T ss_pred cceeeeecchhhhc
Confidence 99999998755433
No 101
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.9e-23 Score=225.37 Aligned_cols=521 Identities=13% Similarity=0.125 Sum_probs=329.5
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCc-eEEEEeeCCCcEEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW 470 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-~~l~s~~~d~~i~iw 470 (1091)
+.|-+..-..-.||+|+++++.+..+ .|.||...+|.++. .+.+|..++..+.+.|.... .++++++.||.|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 33333344456799999999887654 69999999999887 68899999999999887663 478899999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeec------------ccCCceEEEEEe--cCCeEEEEecCCCCcee-eecCCCCcEEEE
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPH------------AKENIHFIFSIS--VDGKIKAWLYDSLGARV-DYDAPGLGCTRM 535 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~------------~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~ 535 (1091)
|...+.+++++..+.. +..+.+. ...+-..+...+ ..+.++-+.+.+..... .+......-.++
T Consensus 88 d~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred cCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 9999999988864432 2222221 011111111111 11111111111111000 000001113567
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeE-EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC--Cee
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQL 612 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~--~~~ 612 (1091)
.+++.|.+...+. +..+.+|+..++.... ....+..|...+++.+++|+++++++|..||.|.+|.--. +..
T Consensus 167 ~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred EEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 8888888877765 4458889887755111 1111222335589999999999999999999999996433 222
Q ss_pred EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCC
Q 001367 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNED 692 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~ 692 (1091)
......|-+...|.+++|+++|.+|++|+..|.+.+|.+.+++. +-++.
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPR------------------------------ 290 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLPR------------------------------ 290 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-ccccc------------------------------
Confidence 22222233345799999999999999999999999999987752 11111
Q ss_pred CCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccc
Q 001367 693 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 772 (1091)
Q Consensus 693 ~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~ 772 (1091)
-.+.|..+.+|||+........|+.+.+-.........
T Consensus 291 ---------------------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~--- 328 (792)
T KOG1963|consen 291 ---------------------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS--- 328 (792)
T ss_pred ---------------------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh---
Confidence 24567888899999988888888888886654322100
Q ss_pred eeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEE-EEEeCCeEEEEEccCceeEEEecC-----CC----
Q 001367 773 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL-FSASGGVISLYIVMTFKTILTIMP-----PS---- 842 (1091)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-a~~~dg~i~iwd~~~~~~~~~~~~-----~~---- 842 (1091)
++.-..+.+.. . ......-.+.++++|.-+.+ .-+..|.|++||+.+-+.+..+.. +.
T Consensus 329 -----tIsgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 329 -----TISGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred -----hccCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 01101111000 0 01234556778888844444 444479999999998777665431 11
Q ss_pred --CCeEEEEEcCCCCcEEEEEe--------CCC--eEEEEeccCccee-----eeeccccCCeEEEEECC-CC-CEEEEE
Q 001367 843 --PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEVI-----SKLEGHSKRVTGLVFSD-AL-NILVSS 903 (1091)
Q Consensus 843 --~~i~~l~~s~~~~~~la~g~--------~dg--~i~iwd~~~~~~~-----~~l~~h~~~V~~l~~sp-dg-~~las~ 903 (1091)
-.+++++.+. .|.+++++- .|| .+++|-......- .....|...+.+.+|.+ -. .+++++
T Consensus 397 ~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta 475 (792)
T KOG1963|consen 397 IQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA 475 (792)
T ss_pred eEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe
Confidence 2478888888 699999863 333 6788976654322 22345877766666643 33 379999
Q ss_pred eCCCcEEEEEcCCCcee-----eeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCcc
Q 001367 904 GGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV 978 (1091)
Q Consensus 904 s~Dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~ 978 (1091)
+.||.++||-+...+.. ...+.....-|. .++++++||.||..|+++.++.|.+||..+...+.........
T Consensus 476 ~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~ 552 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNW 552 (792)
T ss_pred ccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccccc
Confidence 99999999998432211 111222221233 3689999999999999999999999999884333222222233
Q ss_pred CEEEEEEee----CCCEEEEEEcCCcEEEEeCCCCceEE
Q 001367 979 PISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQC 1013 (1091)
Q Consensus 979 ~v~~v~fs~----dg~~l~t~~~dg~v~iwd~~~~~~~~ 1013 (1091)
++..+.|.. ++... ....+.+.+|++-++.+.-
T Consensus 553 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 553 PIAELLFTAQTQNDGALV--HATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred chHhHhhhccccccccee--eccCceEehHhhhhhheec
Confidence 444444433 44333 3356789999998887764
No 102
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2.4e-24 Score=241.78 Aligned_cols=270 Identities=17% Similarity=0.201 Sum_probs=210.0
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCccc----------ceeEEEeccccCeeEEEEcC-CCCceEEEEeeC
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD 463 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~ 463 (1091)
|-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|.+++|+| +++ +|++++.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3455666777778777777777777777776544321 11224779999999999999 777 8999999
Q ss_pred CCcEEEEeCCCC-------ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEE
Q 001367 464 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1091)
Q Consensus 464 d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1091)
|++|++||+.++ ..+..+.+|...|.+++|+|.. +.+|++++.|+.|++||+++......+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999998753 35899999999999999999888888888999999999
Q ss_pred EcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe----CCCeEEEEECCCCe-
Q 001367 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ- 611 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s----~dg~i~iwd~~~~~- 611 (1091)
|+|+|..|++++. ++.|++||+++++.+..+.+|. ...+..+.|.+++..+++++ .|+.|++||+++..
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999876 6779999999999988888876 23455678899888888754 47999999998754
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEE-CCCeEEEEECCCCCeeccccc-ccccceeeeecc
Q 001367 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP 674 (1091)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~ 674 (1091)
.+.....+.. ..+....|+++++++++++ .|+.|++||+.++..+..... ...++..+++.|
T Consensus 250 p~~~~~~d~~-~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQS-SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCCC-CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 3333333222 3455667899999999887 499999999998876654433 334556666654
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=236.51 Aligned_cols=356 Identities=17% Similarity=0.195 Sum_probs=265.4
Q ss_pred EEEEC-CCCCEEEEEECCCEEEEEEeeCCccc---ceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-
Q 001367 401 RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG- 475 (1091)
Q Consensus 401 ~l~~s-pdg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~- 475 (1091)
.+..+ |+++||.+||.||.|++|++...... .....+..|...|++++...+++ .|++++.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 44444 46788999999999999998754331 12346778999999999999998 7999999999999999887
Q ss_pred -ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc--ee--------eec-CCCCcEEEEEEcCCCCE
Q 001367 476 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTRMAYSANGRR 543 (1091)
Q Consensus 476 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~--------~~~-~~~~~i~~~~~s~d~~~ 543 (1091)
-++.++..|..-|.++++. ..+..++++|+.|+.|++||++++.. .. .+. ++..+|.+++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6888999999999999984 34557999999999999999997633 11 122 56668999999999988
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1091)
+++|+. ++.+++||.++++.+..++||. ..|..+..++||..++++|.||+|++||+...+++.++..|..
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-- 256 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-- 256 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--
Confidence 888876 4459999999999999999998 9999999999999999999999999999999999999988866
Q ss_pred CCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
.|+++..+|+-..+++|+.||.|+.=|+.+......+.....+|..+.. ....+.+-.+
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~---------------------~~~~~~~Wvt 315 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHL---------------------HEHDNSVWVT 315 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhh---------------------ccccCCceee
Confidence 5899999999999999999999999998875444444444444444433 2233334666
Q ss_pred ccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCcccc
Q 001367 704 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 783 (1091)
Q Consensus 704 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 783 (1091)
..|+.|+-|..... ..+++.|.... -+.+....+.+...
T Consensus 316 Ttds~I~rW~~~~~---------------------~~l~~s~~~~~-~~T~~~~~~~~~~~------------------- 354 (735)
T KOG0308|consen 316 TTDSSIKRWKLEPD---------------------IALSVSGDLDF-FSTDSNNHSCDLTN------------------- 354 (735)
T ss_pred eccccceecCCccc---------------------cccccCCCCCc-ccccCCCccccccC-------------------
Confidence 77788888876521 13344444332 22222111111100
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEec
Q 001367 784 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIM 839 (1091)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~ 839 (1091)
+.. .. . .....+..-++-.|-+++++-. .|.+.+||+-....+..+.
T Consensus 355 --tp~--~v--i---~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 355 --TPD--SV--I---PGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred --CCc--ee--c---cCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 000 00 0 1223444455666888888887 6999999998777666553
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.5e-26 Score=223.50 Aligned_cols=284 Identities=14% Similarity=0.223 Sum_probs=235.4
Q ss_pred EEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEe
Q 001367 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1091)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1091)
.+.||...|.+++=+|..-. .+++|+.||.|++||+.+..++.++..|.+.|..+++.. ..+++++.|.+|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999997622 699999999999999999999999999999999999954 4699999999999998
Q ss_pred cCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE
Q 001367 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1091)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 595 (1091)
++.. ...++. ....+..+.-+..+..+++||. .|.|||.....++..+.-.. ..|.++.|+|-...+++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence 7763 222322 2334556666666777888865 39999999888888888666 78999999998776655
Q ss_pred -EeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC-Ceecccccccccceeeeec
Q 001367 596 -AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 673 (1091)
Q Consensus 596 -~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~ 673 (1091)
++.|+.|.+||++.+.++..+..... -+.++|+|++-.++++..|..++.||+... .++....+|...|..++|
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf- 280 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDF- 280 (433)
T ss_pred eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEecc-
Confidence 56999999999999999988766543 488999998888999999999999999876 667778889999999988
Q ss_pred cccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeec
Q 001367 674 PISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 753 (1091)
Q Consensus 674 ~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 753 (1091)
+|.|+-+++|+.|.+||+|....+.+....... ....|.++.||.|.+++++|+.
T Consensus 281 --------------------sptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 281 --------------------SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred --------------------CCCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecCC
Confidence 788899999999999999998865544433322 3457899999999999999999
Q ss_pred CceEEEeecCC
Q 001367 754 NGVHLMWRWPR 764 (1091)
Q Consensus 754 dg~i~vw~~~~ 764 (1091)
|+.+++|.-..
T Consensus 336 d~nvRlWka~A 346 (433)
T KOG0268|consen 336 DGNVRLWKAKA 346 (433)
T ss_pred Ccceeeeecch
Confidence 99999998543
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1e-24 Score=209.21 Aligned_cols=275 Identities=16% Similarity=0.160 Sum_probs=216.7
Q ss_pred cCCCccEEEEEECC-CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 393 RDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 393 ~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
...+..|.+++||| ...++++++.|++|++|+++....+.. .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678999999999 556667889999999999987422222 24567999999999999998 799999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+.+++ +..+..|.++|..+.|.+..+-..|++|+.|++|+.||.+.......+..++ .+.++.. ....++++..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence 99994 5667789999999999877777799999999999999999888887776654 3333322 2334555544
Q ss_pred CCceEEEEEecCCceeeE-EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeEEEEeCCCC-------
Q 001367 552 EGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------- 621 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~------- 621 (1091)
+..|.+|+++.+.... .....- +..++|++..+|....+.|+-+|.+.|..++.+ +.-..+..|..
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 5569999997664322 222221 356889999999888899999999999998876 33344444432
Q ss_pred CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccccc
Q 001367 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1091)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1091)
...|++++|+|.-..|++++.||++.+||-.....+.....+..+|++..|+..|.+.+
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence 33578899999999999999999999999998888888899999999999976665544
No 106
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=5.5e-24 Score=222.63 Aligned_cols=216 Identities=17% Similarity=0.213 Sum_probs=159.9
Q ss_pred eecCCCccEEEEEECC-CCCEEEEEECCCEEEEEEeeCCcccc---eeEEEeccccCeeEEEEcCCCCceEEEEeeCCCc
Q 001367 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~ 466 (1091)
++.+|...|+.+.|+| +..+||+|+.|..|+||.+..|-... .-..+.+..-.|.++.|+|.... |+..+..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--il~s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--ILASGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc--eEEeccCce
Confidence 4889999999999999 77899999999999999998543211 11123333447899999998774 444555889
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc-eeeecCCCC-cEEEEEEcCCCCEE
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRRL 544 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~-~i~~~~~s~d~~~l 544 (1091)
++|||+.+++.+..+.+|...|.+..| +.||.++++.+.|+.|+|||.+.... +.....|.+ .-..+.|..+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 999999999999999999999999998 67899999999999999999987544 334445543 23456777666677
Q ss_pred EEEecCCCCceEEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCee
Q 001367 545 FSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQL 612 (1091)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-s~dg~i~iwd~~~~~~ 612 (1091)
++.+.+......|++||... +..++++.... ...|.---|.||.+.++.+ -.+.++..+.+...++
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP 297 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP 297 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence 77666554566799999875 34444444333 2345555688998877664 4678888888776544
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-23 Score=192.91 Aligned_cols=299 Identities=15% Similarity=0.212 Sum_probs=233.4
Q ss_pred cCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeC------Ccc------cceeEEEeccccCeeEEEEcCCCCceEEEE
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG------GSD------ARQQLEIDAHVGNVNDLAFSAPCKQISVIT 460 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~------~~~------~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s 460 (1091)
-..+..|.+++|+|.|.+.|+|++..+.+|--... +.. ......-+.|.+.|.|.+|+|+|+ ++++
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--liat 106 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIAT 106 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEEe
Confidence 34668999999999999999999999988764432 111 011122346889999999999999 9999
Q ss_pred eeCCCcEEEEeCCCCcee-----EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEE
Q 001367 461 CGDDKTIKVWDAVTGSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 461 ~~~d~~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1091)
|+.|++|++.-.....+. .+|.-|.+.|..++|...+.
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~------------------------------------- 149 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE------------------------------------- 149 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC-------------------------------------
Confidence 999999999765433321 23445666666666532211
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEE
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1091)
..+..|++++. ++..|++-|..+|+..+.+.+|. +.|.++ ++-++-.+++|+.|.+|++||++-...+.+
T Consensus 150 ---s~~~il~s~ga---gdc~iy~tdc~~g~~~~a~sght---ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~ 219 (350)
T KOG0641|consen 150 ---SGGAILASAGA---GDCKIYITDCGRGQGFHALSGHT---GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNT 219 (350)
T ss_pred ---cCceEEEecCC---CcceEEEeecCCCCcceeecCCc---ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeee
Confidence 23445666553 57889999999999999999988 666655 344678899999999999999998888877
Q ss_pred EeCCCC-----CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccC
Q 001367 616 IDAGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSN 690 (1091)
Q Consensus 616 ~~~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~ 690 (1091)
+....+ ...|.+++..|.|++|++|-.|....+||+..++.++.+..|...|.++.|
T Consensus 220 l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrf------------------ 281 (350)
T KOG0641|consen 220 LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRF------------------ 281 (350)
T ss_pred ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEe------------------
Confidence 753221 246889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecC
Q 001367 691 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 763 (1091)
Q Consensus 691 ~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~ 763 (1091)
+|...++++++.|..|++-|++..-..+...+.... |...+-.+.|.|..-.+++.+.|.++.+|-++
T Consensus 282 ---sp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e--hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 282 ---SPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE--HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ---CCCceEEEEecccceEEEeecccchhhcCceEEEEe--ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 778889999999999999998755444444443333 78888899999999999999999999999753
No 108
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.1e-25 Score=204.89 Aligned_cols=200 Identities=18% Similarity=0.238 Sum_probs=161.4
Q ss_pred CCCCeeEEEecC-CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce
Q 001367 800 SQEAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 877 (1091)
Q Consensus 800 ~~~~v~~l~~s~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~ 877 (1091)
|..+|.++.+++ +++.+++++ |++|++|+....+.++++.+|...|...+|+|....++++++.|+.+++||++..-.
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK 182 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence 333333443333 223344445 788888888888888999999999999999999999999999999999999987443
Q ss_pred eeeeccccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEE-E-Ee
Q 001367 878 ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-L-VH 954 (1091)
Q Consensus 878 ~~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la-~-~~ 954 (1091)
...+..|...|.++.|+. +...|+|++.|+.|+.||+..-+ ..+..+.+|.- .|..++|||...-|+ + +.
T Consensus 183 ~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~---AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 183 FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGL---AVRKVKFSPHHASLLASASY 255 (311)
T ss_pred eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCce---EEEEEecCcchhhHhhhccc
Confidence 344889999999999986 66889999999999999998743 34555577765 799999999876554 4 58
Q ss_pred cCeEEEEEcCCcceeeeeecCCccCEEEEEEee-CCCEEEEEEcCCcEEEEeC
Q 001367 955 ETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 955 d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~-dg~~l~t~~~dg~v~iwd~ 1006 (1091)
|-+++|||...+.........|+.-|..+.||+ ++.++|+++.|+.++||+-
T Consensus 256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 889999999877666666778899999999998 6789999999999999984
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=218.31 Aligned_cols=281 Identities=17% Similarity=0.236 Sum_probs=243.1
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
..+.++..+|....+++|+.|.++.++|..+++.+. .+.||...|+.+.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 468888888888899999999999999999987665 7889999999999999998 79999999999999998888
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC--CCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
.......|..+|+.+..++ .|.||++++.||+..+.|++++......... .-.+++.+|+|||..+.++.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 8888899999999999866 5579999999999999999999888766553 346899999999999988875 7
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCC
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1091)
+.+.+||+.++..+..|.+|. ++|..++|+.+|.+++++++|+.|++||++.-+...++...... .+.++.|.+.|
T Consensus 369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG 444 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG 444 (506)
T ss_pred ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence 789999999999999999988 99999999999999999999999999999999998888877664 78999999999
Q ss_pred CEEEEEECCCeEEEEECCCC--CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccc
Q 001367 635 TLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 635 ~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
.+|+.++.+=.|++++-.+. ..+..+..|.+..+++.| ....+++++++.|...+++
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F---------------------g~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRF---------------------GEHAQYLASTSMDAILRLY 503 (506)
T ss_pred CeEEeecceeEEEEEecccccceeeehhhhcccccceeee---------------------cccceEEeeccchhheEEe
Confidence 99999988767777664433 555666667777777777 5566778888887776665
Q ss_pred c
Q 001367 713 K 713 (1091)
Q Consensus 713 ~ 713 (1091)
.
T Consensus 504 a 504 (506)
T KOG0289|consen 504 A 504 (506)
T ss_pred e
Confidence 4
No 110
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=9e-25 Score=244.83 Aligned_cols=277 Identities=17% Similarity=0.238 Sum_probs=241.7
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56788899998 77899999999999999999875552 3889999999999987555 899999999999999999
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
|++.+.+.+|...|.++.. ...++++|+.|.+|++|+++++..+..+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 9999999999999999976 33578899999999999999999999999999999999987 888999886 6
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeEEEEeCCCCCCCCceEEEccC
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
+.|.+||+.++++++.+.+|. ..|.++.+.+. ..+++|+.|++|++||+.++ +++.++..|.. .+.. +...
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~--l~~~ 422 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVSS--LLLR 422 (537)
T ss_pred ceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--cccc--cccc
Confidence 689999999999999999988 99999988765 89999999999999999999 89999888765 2333 3345
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeccccc-ccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccc
Q 001367 634 GTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 634 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
+++|++++.|++|++||..++..+..+.+ +...|.++++. ...+++++.|+++++|
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-----------------------~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-----------------------KEEILCSSDDGSVKLW 479 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-----------------------cceEEEEecCCeeEEE
Confidence 78999999999999999999999999988 56777766551 3567888999999999
Q ss_pred cccccC
Q 001367 713 KPLFAR 718 (1091)
Q Consensus 713 ~~~~~~ 718 (1091)
|+....
T Consensus 480 dl~~~~ 485 (537)
T KOG0274|consen 480 DLRSGT 485 (537)
T ss_pred ecccCc
Confidence 987543
No 111
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.5e-24 Score=206.03 Aligned_cols=241 Identities=19% Similarity=0.278 Sum_probs=204.2
Q ss_pred CCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCc--EEEEEeCCCeEEEEeccC
Q 001367 798 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 798 ~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~la~g~~dg~i~iwd~~~ 874 (1091)
..|...++++|+ ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ .-. .|.+|+.||.|.+|+...
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 469999999998 789999998 89999999999999999999999999999998 554 789999999999999999
Q ss_pred cceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe
Q 001367 875 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 954 (1091)
Q Consensus 875 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~ 954 (1091)
.+++..+++|.+.|+.++.+|.|++-++.+.|+.++.||+-+|+......+. . ..+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~---~------~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK---N------KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC---C------cceeeEEcCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999987743322222 1 234699999999999999
Q ss_pred cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeE
Q 001367 955 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1034 (1091)
Q Consensus 955 d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1034 (1091)
...|-+|.+.+-........ ..++.++.|. ++..|++|+.|+.|.+||..++...+.+. +|..+|..+.
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~ 256 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIA 256 (362)
T ss_pred ccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee--------cchhheeeeE
Confidence 99999999987776655432 2456666665 46678899999999999999988777766 4677788775
Q ss_pred EEeCCCCCCeEEEEecCCcEEEEecCCC
Q 001367 1035 IAAHPLKPTQFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 1035 ~~~~p~d~~~l~~g~~dg~v~~w~~~~~ 1062 (1091)
.--.| ++.+|++++.||.|++||+...
T Consensus 257 ~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 257 SYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEecC-CceEEEEeccCceEEEEEcccc
Confidence 54555 5789999999999999999765
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=4.5e-24 Score=214.44 Aligned_cols=282 Identities=16% Similarity=0.194 Sum_probs=243.1
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..+.++...|... .+.+|+.|.++.++|..+++.+.. ++||...|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 4788888888744 679999999999999999988865 88999999999999999999999
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC--CCcceEEEe
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--HGAPVYSLC 492 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~ 492 (1091)
+.|..|+||......+.. ....|..+|+.+...|.|. ||++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998876443 5678999999999999999 899999999999999999998876653 234578888
Q ss_pred ecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEe
Q 001367 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1091)
|+| ||.++.+|..||.+++||+.+......+.+|.++|..++|+.+|-+|+++.. ++.|++||++.-+..+++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 865 7789999999999999999999988899999999999999999999999986 5569999999988888887
Q ss_pred cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEE
Q 001367 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1091)
Q Consensus 573 ~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1091)
... ...+.++.|.+.|.+++.++.+=.|++++-.+.. .+..+..+. ...+++.|....+++++++.|..++++.
T Consensus 429 l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 429 LDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc--cccceeeecccceEEeeccchhheEEee
Confidence 765 4579999999999999999888777777755543 444444443 3578999999999999999999988875
Q ss_pred C
Q 001367 651 T 651 (1091)
Q Consensus 651 ~ 651 (1091)
+
T Consensus 505 ~ 505 (506)
T KOG0289|consen 505 L 505 (506)
T ss_pred c
Confidence 4
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2e-24 Score=219.25 Aligned_cols=268 Identities=21% Similarity=0.280 Sum_probs=223.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCccccee--------------EEE-eccccCeeEEEEcCCCCce
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ--------------LEI-DAHVGNVNDLAFSAPCKQI 456 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~--------------~~~-~~h~~~v~~~~~s~d~~~~ 456 (1091)
...|.-+|.+++++||+++..+++.+++|.=|++.+|+..+.. ..- .+|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5569999999999999999999999999999999988743111 011 27888999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEE
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1091)
+|++|+.|..|.|||..+.+.++.+.+|.+.|.+++|.- ....+++++.|+.|++|+++......++-+|...|.++.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 899999999999999999999999999999999999954 345799999999999999999988889999999999998
Q ss_pred EcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEE
Q 001367 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1091)
...-++.+-+++. |.++++|++.. +....+.++. +.+.|++|-. ..++++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~---~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGE---GSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCC---CCeeeEEEec-ccceeeccCCceEEEeeecccCceeEe
Confidence 8888887777765 77799999943 3344566666 7899999975 468999999999999999999988776
Q ss_pred eCCCCC----------CCCceEEEccCCCEEEEEECCCeEEEEECCCC----Ceecccccccccceeeeec
Q 001367 617 DAGGGL----------PENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKLSVN 673 (1091)
Q Consensus 617 ~~~~~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~ 673 (1091)
....+. ..|++++..|...++++|+.+|.|++|.+..+ ..+..+. ..+-|++++|+
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 532211 26789999999999999999999999999987 2233333 45667777773
No 114
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.1e-24 Score=231.27 Aligned_cols=275 Identities=20% Similarity=0.252 Sum_probs=237.6
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
.-+.|+ ....||+|.. ..|++|+..++.... + ...+...|+++.|+++|. +|+.|..+|.|.|||..+.+.+.
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~-l--~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTE-L--CSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCCceEE-e--EecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhccccc
Confidence 346788 4556777643 459999999987433 2 223378999999999999 89999999999999999999999
Q ss_pred EecC-CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee-ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 480 SFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 480 ~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
.+.+ |...|.+++|. +..+.+|+.++.|..+|++....... +..|...|..+.|++|++++++++. |+.+
T Consensus 254 ~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~ 325 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVV 325 (484)
T ss_pred cccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccce
Confidence 9998 99999999994 46899999999999999998877666 8889999999999999999999987 7779
Q ss_pred EEEecCCceeeEEEecccccccceEEEEEcCCC-CEEEE--EeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCC
Q 001367 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1091)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1091)
.|||....+++..+..|. ..|.+++|+|-. ..|++ |+.|+.|++||..+++.+..+.... .|..+.|++..
T Consensus 326 ~Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~ 399 (484)
T KOG0305|consen 326 FIWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS---QVCSLIWSKKY 399 (484)
T ss_pred EeccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC---ceeeEEEcCCC
Confidence 999998889999999988 999999999975 45555 4489999999999999998887653 58999999988
Q ss_pred CEEEEE--ECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccc
Q 001367 635 TLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 635 ~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
+-|+++ ..++.|.||+..+...+..+.+|...|..+++ +|||..+++++.|.++++|
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~---------------------SPdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLAL---------------------SPDGETIVTGAADETLRFW 458 (484)
T ss_pred CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEE---------------------CCCCCEEEEecccCcEEec
Confidence 766654 45789999999999999999999999999999 8899999999999999999
Q ss_pred cccc
Q 001367 713 KPLF 716 (1091)
Q Consensus 713 ~~~~ 716 (1091)
++-.
T Consensus 459 ~~f~ 462 (484)
T KOG0305|consen 459 NLFD 462 (484)
T ss_pred cccC
Confidence 9653
No 115
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.2e-23 Score=200.99 Aligned_cols=297 Identities=13% Similarity=0.166 Sum_probs=218.4
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
.+.+|.+|.++|++++||.||+ .||+++.|++|+||++..-+...-+.++ ..-.-+..+.++|+
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R---------------~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIR---------------QNVEYDHPTRVVFA 141 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhh---------------ccccCCCceEEEEC
Confidence 4567899999999999999999 5699999999999999875433222211 11122367889999
Q ss_pred CCCCEEEEEEC-CCEEEEEEeeCCcc---ccee------EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 406 PDGSLLGVAYS-KHIVQLYAYHGGSD---ARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 406 pdg~~las~~~-d~~i~iwd~~~~~~---~~~~------~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
||-+-+++... ..++++|.+...+. .... .--+.|...|..+-....++ ++++++.|..|.+|++. |
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k--~imsas~dt~i~lw~lk-G 218 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK--YIMSASLDTKICLWDLK-G 218 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce--EEEEecCCCcEEEEecC-C
Confidence 99887766544 45899998754322 1100 01124666788888887788 89999999999999988 9
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecC--------CCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--------SLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--------~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
+.+..+......-+..+. +|+|+++++++..-.|++|.+- .-...+.+.+|...|..++|+++.+.+++.
T Consensus 219 q~L~~idtnq~~n~~aav--SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAV--SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred ceeeeeccccccccceee--CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 999888766666666666 5688999999999999999752 233455788999999999999999999999
Q ss_pred ecCCCCceEEEEEecCCc-------eeeEEEe--cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 548 GTSKEGESFLVEWNESEG-------AIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~-------~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
+. +|.+++||..-. +.++... .+. .......++++|+|+.|+.+ ....+.++..++|+....+..
T Consensus 297 Sk----DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 297 SK----DGKWRIWDTDVRYEAGQDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELED 370 (420)
T ss_pred ec----CCcEEEeeccceEecCCCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHH
Confidence 86 667999997532 2222221 111 12334589999999877664 445799999999887766653
Q ss_pred CCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 619 GGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
-. ...|.+++|+++|++++++++ ..++++.-
T Consensus 371 ~h-~~~Is~is~~~~g~~~atcGd-r~vrv~~n 401 (420)
T KOG2096|consen 371 IH-STTISSISYSSDGKYIATCGD-RYVRVIRN 401 (420)
T ss_pred hh-cCceeeEEecCCCcEEeeecc-eeeeeecC
Confidence 22 236899999999999999875 67777653
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3e-23 Score=200.41 Aligned_cols=270 Identities=20% Similarity=0.278 Sum_probs=213.5
Q ss_pred CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 413 (1091)
.+.|+.|.|+|.+..| ++++.||++++||+........ -.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~L-LvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDL-LVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCcE-EEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence 4689999999998855 5556999999999988755432 23899999999997 567889
Q ss_pred EECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEee
Q 001367 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1091)
|+.||.|+.+|+.++... .+..|..+|.++.+++... .+++||.|++|++||.........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998755 3678999999999998766 79999999999999988765555554 3347888865
Q ss_pred cccCCceEEEEEecCCeEEEEecCCCCceeeecCC--CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc----ee
Q 001367 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG----AI 567 (1091)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~----~~ 567 (1091)
.+..|+.|+.+..+.+||+++.......... .-.+.++++-|++.-.++++- +|.|.+=.+... +.
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 4568999999999999999987766533322 336889999998877777765 444554333333 33
Q ss_pred eEEEecccc------cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 568 KRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 568 ~~~~~~~~~------~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
...|+.|.. ...+|++++|+|-.+.+++|+.||.|.+||+.+.+.+..+.... ..|..++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~--~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE--TSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC--CceEEEEeccCCCeEEEEe
Confidence 444555542 22479999999999999999999999999999999888876542 3589999999999999997
Q ss_pred C
Q 001367 642 N 642 (1091)
Q Consensus 642 ~ 642 (1091)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 6
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.3e-21 Score=208.75 Aligned_cols=279 Identities=16% Similarity=0.219 Sum_probs=225.3
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCC-ceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
..|+..-+.++|.|+|. ++.+++.||.|++|+...-. .... +.-++..|.+++.. +.
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~~--s~ 67 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIACY--SN 67 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEeec--cc
Confidence 37888999999999999 67888999999999987652 2211 22266777777764 55
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
+|++|+.+++|.+|...+++.-.. +...+-++.+++|+.+|+ +++.||.|-.|++-++.+......+++|.++|.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~i---L~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTI---LARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccce---eeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence 999999999999999998875442 334567899999999999 899999999999999999999999999999999
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC--------CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 561 (1091)
++.|+| ++.+|++.+-||.|++||++++.....+..- ...+..++|+|+|..+++... ++.|.+|+
T Consensus 143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~ 216 (933)
T KOG1274|consen 143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYS 216 (933)
T ss_pred eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEc
Confidence 999955 6679999999999999999988766654331 235678999999766666654 66799999
Q ss_pred cCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
..+.+....+..... ...+..+.|+|+|+||++++.+|.|.|||.++-.. |.....|.+++|.|+.+.+-.-.
T Consensus 217 r~~we~~f~Lr~~~~-ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 217 RKGWELQFKLRDKLS-SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred cCCceeheeeccccc-ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEe
Confidence 999998888876552 23489999999999999999999999999998222 33345689999999988776666
Q ss_pred CCCeEEEE
Q 001367 642 NENRIKIL 649 (1091)
Q Consensus 642 ~dg~i~iw 649 (1091)
..|...+|
T Consensus 290 ~~g~~~~~ 297 (933)
T KOG1274|consen 290 ALGTLGVS 297 (933)
T ss_pred eccccccC
Confidence 65655554
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.5e-24 Score=200.11 Aligned_cols=252 Identities=20% Similarity=0.338 Sum_probs=208.4
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC--CCCceEEEEeeCCCcEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIK 468 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~ 468 (1091)
+...|+..|..+...--|++||+|+.|++|+|+.+..+.....+.+|.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 3567999999999888999999999999999999998877677789999999999999976 677 899999999999
Q ss_pred EEeCCCCc--eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc---eeeecCCCCcEEEEEEcCC---
Q 001367 469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN--- 540 (1091)
Q Consensus 469 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d--- 540 (1091)
||.-.+|+ .......|...|++++|.|..-|-.|++++.||.|.+.+++.... ......|.-.+++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99977774 345667899999999999999999999999999999999887622 2345667788999999986
Q ss_pred C-----------CEEEEEecCCCCceEEEEEecCCce--eeEEEecccccccceEEEEEcCCC----CEEEEEeCCCeEE
Q 001367 541 G-----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIK 603 (1091)
Q Consensus 541 ~-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~s~dg~i~ 603 (1091)
| +.|++++. |..|.+|+..+++ ..+.+.+|. +.|+.++|.|.- .++++++.||++.
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 4 56888876 6779999988763 344577777 999999999974 5789999999999
Q ss_pred EEECCCC--eeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 604 IWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 604 iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
||..+.. ....++ .+.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 237 Iwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 9976532 111121 12223458999999999999999999999999754
No 119
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.2e-22 Score=228.38 Aligned_cols=250 Identities=12% Similarity=0.175 Sum_probs=189.6
Q ss_pred EECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC-CCceEEEEeeCCCcEEEEeCCCCc--------eeEEecCC
Q 001367 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH 484 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~~ 484 (1091)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|+|||+.++. .+..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5567889999987653 34468899999999999997 56 89999999999999998642 34567899
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
...|.+++|+|.. ..++++++.|+.|++||+++......+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 9999999997753 2356899999999999999888766665 4568999999999999998875 66799999999
Q ss_pred ceeeEEEecccccc--cceEEEEEcCCCCEEEEEeCCC----eEEEEECCC-CeeEEEEeCCCCCCCCceEEEccCCCEE
Q 001367 565 GAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1091)
Q Consensus 565 ~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1091)
++.+..+.+|.... ..+....|++++.++++++.++ .|++||+++ ++++..+..+.....+......+++.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999998887211 1123334568999999988664 799999985 6667666555443222233334568899
Q ss_pred EEEECCCeEEEEECCCCCeecccc--cccccceeeeeccc
Q 001367 638 AVIANENRIKILETPESNSVDAAG--VLSDNLRKLSVNPI 675 (1091)
Q Consensus 638 ~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~ 675 (1091)
++|..|+.|++|++..+.. ..+. .+..++.+++|.|.
T Consensus 279 lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred EEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence 9999999999999987632 2222 24456667777554
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.8e-20 Score=203.19 Aligned_cols=277 Identities=13% Similarity=0.172 Sum_probs=232.4
Q ss_pred cCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCC-cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
..|+..-+.++|.|+|.+|.+++.||.|++|+.... +... .+..+...|.+++-. +. .|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 358899999999999999999999999999998776 3222 233377778777764 44 699999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
..+++.-..+...+-++..+++ +.+|.+++.|+.|-.|++-+.........+.+|..+|.++.|+|++++||+...
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 9988776566666788999998 567889999999999999999999999999999999999999999999999876
Q ss_pred CCceEEEEEecCCceeeEEEeccccc-----ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCc
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1091)
+|.|++||+.++.+...+.+.... ...+..++|+|++..+++.+.|+.|.+|+..+......+........+.
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 778999999999887776654321 2345678999999999999999999999999999999988766555588
Q ss_pred eEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCC
Q 001367 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1091)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g 686 (1091)
.+.|+|+|+|||+++-+|.|.|||.++... ......|.+++|.|....+.+....|
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeecc
Confidence 999999999999999999999999997322 44456788999988887776555554
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2e-23 Score=200.78 Aligned_cols=329 Identities=10% Similarity=0.134 Sum_probs=241.9
Q ss_pred EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCC
Q 001367 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNED 692 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~ 692 (1091)
+..+.+| ...|..++.......+.+++.|.+-+||.++++.++....+|.+.|+++.|
T Consensus 141 vre~~GH--kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikf-------------------- 198 (481)
T KOG0300|consen 141 VRELEGH--KDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKF-------------------- 198 (481)
T ss_pred hhhhccc--ccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEe--------------------
Confidence 3444444 446888888877788999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccc
Q 001367 693 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 772 (1091)
Q Consensus 693 ~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~ 772 (1091)
.+.+.++++++.|++..+|.....-+..... .+.+|.+.- ....+........++ .+
T Consensus 199 -h~s~~L~lTaSGD~taHIW~~av~~~vP~~~---a~~~hSsEe-E~e~sDe~~~d~d~~----~~-------------- 255 (481)
T KOG0300|consen 199 -HNSGLLLLTASGDETAHIWKAAVNWEVPSNN---APSDHSSEE-EEEHSDEHNRDTDSS----EK-------------- 255 (481)
T ss_pred -ccccceEEEccCCcchHHHHHhhcCcCCCCC---CCCCCCchh-hhhcccccccccccc----cc--------------
Confidence 6678889999999999999843211100000 000010000 000000000000000 00
Q ss_pred eeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEc
Q 001367 773 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN 851 (1091)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 851 (1091)
..+..+........+|...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|....+.++-+
T Consensus 256 ------------sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 256 ------------SDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTH 323 (481)
T ss_pred ------------cCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccC
Confidence 001111111111225999999999999999999999 8999999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEeccCc-ceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCC
Q 001367 852 PHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG 930 (1091)
Q Consensus 852 ~~~~~~la~g~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 930 (1091)
| ..+++++.+.|.+.++||+... ..+..|+||.+.|+++.|.-| ..++++++|.+|+|||+.+-. ..+.+...
T Consensus 324 p-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR----splATIRt 397 (481)
T KOG0300|consen 324 P-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR----SPLATIRT 397 (481)
T ss_pred C-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeecccc----Ccceeeec
Confidence 9 8999999999999999999853 457889999999999999876 468899999999999998733 12233322
Q ss_pred CcCCCCCceEEEEcCCCCEEEEEe-cCeEEEEEcCCccee---eeeecCCccCEEEEEEeeCC--CEEEEEEcCCcEEEE
Q 001367 931 VMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCL---KQWFPISSVPISQATFSCDC--RMVFTSFVDGTLSIH 1004 (1091)
Q Consensus 931 ~~~~~~~i~~l~fs~dg~~la~~~-d~~i~vwd~~~~~~~---~~~~~~h~~~v~~v~fs~dg--~~l~t~~~dg~v~iw 1004 (1091)
. .++..++.+..+..||.-. +..|++||+...... +.-..+|..-|.+++|+.+- .-|++++-|..+.-|
T Consensus 398 d----S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 398 D----SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred C----CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence 2 2588899999999999954 568999999754432 22346789999999999765 348899999999999
Q ss_pred eCCC
Q 001367 1005 EASN 1008 (1091)
Q Consensus 1005 d~~~ 1008 (1091)
++..
T Consensus 474 ~in~ 477 (481)
T KOG0300|consen 474 KINT 477 (481)
T ss_pred Eecc
Confidence 8764
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.2e-23 Score=199.36 Aligned_cols=272 Identities=16% Similarity=0.227 Sum_probs=222.1
Q ss_pred EEEEECCCEEEEEEeeCCc---------ccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe
Q 001367 411 LGVAYSKHIVQLYAYHGGS---------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~---------~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1091)
+++|+....|.=+++.-.. .+.+...+..|.++|++++.+ +. ++++||.|-+|+|||+.+...+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcce
Confidence 4555555555544443211 123344677899999999985 56 8999999999999999999999999
Q ss_pred cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 561 (1091)
..|.+.|+++.|.+......|++|+.||.|.+|+...-.....++.|.+.|+.++.+|.|+..++.+. |..+++||
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~----D~~lr~WN 155 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG----DQVLRTWN 155 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC----Cceeeeeh
Confidence 99999999999976655558999999999999999999889999999999999999999999998875 77899999
Q ss_pred cCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
+-+|+.-....-.. ....+.|+|.|.+++.++.+ .|-+|.+++......+.... .+.++.|. ++..|++|.
T Consensus 156 LV~Gr~a~v~~L~~----~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~---r~l~~~~l-~~~~L~vG~ 226 (362)
T KOG0294|consen 156 LVRGRVAFVLNLKN----KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPK---RILCATFL-DGSELLVGG 226 (362)
T ss_pred hhcCccceeeccCC----cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccc---cceeeeec-CCceEEEec
Confidence 99988766655433 44559999999998888765 58999998877776665432 34555554 467899999
Q ss_pred CCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccC
Q 001367 642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFAR 718 (1091)
Q Consensus 642 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~ 718 (1091)
+|+.|.+||.....+...+.+|...|-.+.+-- .|++.+++++++||.|++||++...
T Consensus 227 d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~-------------------~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPLTEFLAHENRVKDIASYT-------------------NPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCceEEEeccCCCccceeeecchhheeeeEEEe-------------------cCCceEEEEeccCceEEEEEccccc
Confidence 999999999999999999999999999887421 6788999999999999999988653
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.3e-23 Score=214.40 Aligned_cols=287 Identities=14% Similarity=0.183 Sum_probs=229.1
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.|..-|.++++|...++ +.||+. |-|+|||+....... +....-.-....-|.++.++|||+.|
T Consensus 417 ~HGEvVcAvtIS~~trh-VyTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRH-VYTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred ccCcEEEEEEecCCcce-eEecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEecCCCceE
Confidence 46668888999998885 588876 889999996542211 00000011245789999999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1091)
++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|.||...+.||
T Consensus 481 ivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred EeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence 9999999999999987542 22223333344678899999999 88999999999999999999999999999999999
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEE
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1091)
.+ +++|..|.+|+.|.+|+.||++++........ ...|.++..+|.+.+++++-. ++.+.+...... ....+
T Consensus 558 di--s~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~skp-~kyql 629 (705)
T KOG0639|consen 558 DI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSKP-EKYQL 629 (705)
T ss_pred Ee--cCCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecCCc-cceee
Confidence 98 56888999999999999999998877665443 347899999999999999976 445666664433 33344
Q ss_pred ecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 572 ~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
..|. ..|.++.|.+.|+++++.+.|..+..|.+.-|..+...... ..|.++.+|.|.+++++|+.|..-.+|.+
T Consensus 630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4444 89999999999999999999999999999988877766543 46899999999999999999988888864
No 124
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.5e-21 Score=210.53 Aligned_cols=515 Identities=16% Similarity=0.176 Sum_probs=324.2
Q ss_pred eccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCc-eEEEEEecCCeEEEEec
Q 001367 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLY 516 (1091)
Q Consensus 438 ~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~ 516 (1091)
.|-...-....||+|+++ ++.+. +..|.||...+|.++..+.+|..++.++.+.+.+.. .++++++.+|.|++||.
T Consensus 13 gg~n~~~~~avfSnD~k~--l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~ 89 (792)
T KOG1963|consen 13 GGRNGNKSPAVFSNDAKF--LFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDW 89 (792)
T ss_pred ccccceecccccccCCcE--EEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecC
Confidence 333334445689999994 44333 568999999999999999999999999999877664 68889999999999999
Q ss_pred CCCCceeeecCCCCcEEEEEEcC---CCCEEEEEecCCCCceEEEEEecCCceee-----EEEecccc----cccceEEE
Q 001367 517 DSLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIK-----RTYQGLQL----QHNSVSVV 584 (1091)
Q Consensus 517 ~~~~~~~~~~~~~~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~iwd~~~~~~~-----~~~~~~~~----~~~~v~~v 584 (1091)
..+.....+.... ++..+.+.| +-...+..+. +....+........... .++..... ....-.++
T Consensus 90 ~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~--~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 90 SDGELLKTFDNNL-PVHALVYKPAQADISANVYVSV--EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred CCcEEEEEEecCC-ceeEEEechhHhCccceeEeec--ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 9888777665543 333333322 1111111111 00111111111111111 11111100 00114567
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeEEEE-e-CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccccc
Q 001367 585 HFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-D-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 585 ~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
.+++.+.+....- +..+.+|+..++...... . ...+...+++++++|+++++|++..||.|.+|.--.. ..
T Consensus 167 ~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~~ 239 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------SD 239 (792)
T ss_pred EEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------cc
Confidence 7788776655554 456888888775411110 0 0112223689999999999999999999999974321 00
Q ss_pred ccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEe
Q 001367 663 LSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 742 (1091)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 742 (1091)
.. -+.++|.. |...|.+++|+
T Consensus 240 ~~------------------------------------------~t~t~lHW-----------------H~~~V~~L~fS 260 (792)
T KOG1963|consen 240 DS------------------------------------------ETCTLLHW-----------------HHDEVNSLSFS 260 (792)
T ss_pred cc------------------------------------------ccceEEEe-----------------cccccceeEEe
Confidence 00 11111111 66789999999
Q ss_pred cCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-C
Q 001367 743 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G 821 (1091)
Q Consensus 743 ~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d 821 (1091)
++|.+|++|+..|.+.+|.+.+++. .. ++ .-..+|..+.+|||+.+.+... |
T Consensus 261 ~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LP--RLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 261 SDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LP--RLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred cCCceEeecccceEEEEEeecCCCc----------------------cc---cc--ccCCeeEEEEEcCCCCeEEEEecC
Confidence 9999999999999999998765421 11 11 2567899999999999887765 8
Q ss_pred CeEEEEEccCceeEEEecCC-----------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeec--------
Q 001367 822 GVISLYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------- 882 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~-------- 882 (1091)
+.|.+....+.....++.+. .+-.+.++++| .-+.++..+..|.|.+||+.+.+.+..+.
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~ 392 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSD 392 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccC
Confidence 99999888766555544432 23457788999 66778888999999999998876654442
Q ss_pred ---cccCCeEEEEECCCCCEEEEEeC--------CC--cEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEE-cCCCC
Q 001367 883 ---GHSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF-HKDQT 948 (1091)
Q Consensus 883 ---~h~~~V~~l~~spdg~~las~s~--------Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f-s~dg~ 948 (1091)
.+.-.+++++.+-.|.+++|.-. || .+++|-.......-.........|.. .+...+| ++...
T Consensus 393 ~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~---~~vat~~~~~~rs 469 (792)
T KOG1963|consen 393 GDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN---AFVATIFLNPTRS 469 (792)
T ss_pred CcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc---eeEEEEEecCccc
Confidence 12345888888989999998642 33 47889876644322222222222222 2333333 33333
Q ss_pred -EEEE-EecCeEEEEEcCCcceeee---------eecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC-CceEEEee
Q 001367 949 -RFLL-VHETHLAIYEAEELTCLKQ---------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRIL 1016 (1091)
Q Consensus 949 -~la~-~~d~~i~vwd~~~~~~~~~---------~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~-~~~~~~~~ 1016 (1091)
..++ +.||.+++|-....+.+.. .-.-|..++++++||.||..|+ .+.|++|.+||..+ .++.+...
T Consensus 470 ~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~ 548 (792)
T KOG1963|consen 470 VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEG 548 (792)
T ss_pred ceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhcccc
Confidence 4555 6899999998843322211 1112688999999999997666 55788999999998 55554444
Q ss_pred cccccCCCCcccccceeEE-EeCCCCCCeEEEEecCCcEEEEecCCCCCCc
Q 001367 1017 STAYLRPTTSCLHVYPHAI-AAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1066 (1091)
Q Consensus 1017 ~~~~~~~~~~~~~v~~~~~-~~~p~d~~~l~~g~~dg~v~~w~~~~~~~~~ 1066 (1091)
...+. +...+. +-.+. ...+.....+.+.+|++......|
T Consensus 549 ~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 549 SRNWP--------IAELLFTAQTQN--DGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ccccc--------hHhHhhhccccc--ccceeeccCceEehHhhhhhheec
Confidence 22211 111111 11221 234455667889999999888878
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=3.7e-23 Score=220.18 Aligned_cols=278 Identities=15% Similarity=0.211 Sum_probs=230.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeE-EEEcCCCCceEEEEeeCCCcEEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-LAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
+.||...|..+++.++. .+++++.||++++|+-..++.+.. ..+.+|.+-|.. +++.+..+. .+++|+.|++|.+|
T Consensus 10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~y~e~~~~-~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLET-HAFEGPKGFIANSICYAESDKG-RLVVGGMDTTIIVF 86 (745)
T ss_pred eccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccc-eecccCcceeeccceeccccCc-ceEeecccceEEEE
Confidence 88999999999987655 889999999999999887665542 356778887777 888763332 69999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
...+..++..+.+|...|+++.. ..++ .+++||.|.++++|.. ++....+.+|...|.++..-|++ .+++++.
T Consensus 87 ~~~~~~P~~~LkgH~snVC~ls~--~~~~-~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa- 159 (745)
T KOG0301|consen 87 KLSQAEPLYTLKGHKSNVCSLSI--GEDG-TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSA- 159 (745)
T ss_pred ecCCCCchhhhhccccceeeeec--CCcC-ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccC-
Confidence 99999999999999999999976 3343 4999999999999954 45556689999999999999988 6667765
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
|..|++|.- ++.+++|.+|. ..|+.+++-++ ..+++++.||.|+.|++ +|+.+....+|.. .++++..
T Consensus 160 ---DKtIklWk~--~~~l~tf~gHt---D~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn--~vYsis~ 227 (745)
T KOG0301|consen 160 ---DKTIKLWKG--GTLLKTFSGHT---DCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN--FVYSISM 227 (745)
T ss_pred ---cceeeeccC--Cchhhhhccch---hheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccce--EEEEEEe
Confidence 667999985 88899999988 99999999886 46899999999999999 7777777766654 6899998
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
..++..+++++.|++++||+.. .+.+.+..+...++++.+-+ +| -+++|++||.||
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~---------------------Ng-DIvvg~SDG~Vr 283 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL---------------------NG-DIVVGGSDGRVR 283 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee---------------------CC-CEEEeccCceEE
Confidence 8888999999999999999987 67777777777888877633 22 367888999999
Q ss_pred ccccc
Q 001367 711 VEKPL 715 (1091)
Q Consensus 711 ~w~~~ 715 (1091)
+|...
T Consensus 284 VfT~~ 288 (745)
T KOG0301|consen 284 VFTVD 288 (745)
T ss_pred EEEec
Confidence 99865
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=3.4e-23 Score=210.88 Aligned_cols=266 Identities=16% Similarity=0.242 Sum_probs=211.8
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC-C
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 408 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g 408 (1091)
...|.++|..+.+-|....++|+++..+.|.|||+.+-.-..... +.| .+...+.||+..=..++|++. .
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------~~~---~Pdl~L~gH~~eg~glsWn~~~~ 190 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------GEC---RPDLRLKGHEKEGYGLSWNRQQE 190 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------ccC---CCceEEEeecccccccccccccc
Confidence 346888999999999999899999999999999987643332100 011 122348899988888999994 5
Q ss_pred CEEEEEECCCEEEEEEeeCCcc----cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC--CCceeEEec
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFE 482 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~ 482 (1091)
-+|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.+...
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCccccc
Confidence 6889999999999999986543 5556678899999999999998776 79999999999999999 566677888
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc-eeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 561 (1091)
+|.++|++++|.|.. +..||+|+.|++|.+||+++... ...+..|...|..+.|||....+++.+. .++.+.+||
T Consensus 270 ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWD 345 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWD 345 (422)
T ss_pred ccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEEEe
Confidence 999999999998874 57999999999999999998664 5588999999999999997765554432 277899999
Q ss_pred cCCceee-----------EEEecccccccceEEEEEcCCCCEEEE-EeCCCeEEEEECCC
Q 001367 562 ESEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 609 (1091)
Q Consensus 562 ~~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~dg~i~iwd~~~ 609 (1091)
+..-... ..+-.|.+|...|..+.|+|+..++++ .++|+.+.||.+..
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 8743221 122334445589999999999988765 78999999999763
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=205.06 Aligned_cols=289 Identities=15% Similarity=0.229 Sum_probs=222.6
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeEEEEeCCCCCCCCceEEEccCCC-EEEEEECCCeEEEEECCCC
Q 001367 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1091)
Q Consensus 578 ~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~ 654 (1091)
.+.|+++.|+|..+.+++++.|++++||.++.. ..++.+.... .+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecCCCceEEEecccceEEEEeecccc
Confidence 468999999999999999999999999988654 3445554443 3789999999998 8888888889999998755
Q ss_pred CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccc
Q 001367 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 734 (1091)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 734 (1091)
+....-+ +
T Consensus 291 k~~k~~~---------------------------------~--------------------------------------- 298 (514)
T KOG2055|consen 291 KVTKLKP---------------------------------P--------------------------------------- 298 (514)
T ss_pred ccccccC---------------------------------C---------------------------------------
Confidence 3221100 0
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.| . ....+..+.+||+++
T Consensus 299 ---------~g------------------------------------------~-----------e~~~~e~FeVShd~~ 316 (514)
T KOG2055|consen 299 ---------YG------------------------------------------V-----------EEKSMERFEVSHDSN 316 (514)
T ss_pred ---------CC------------------------------------------c-----------ccchhheeEecCCCC
Confidence 00 0 122344566777777
Q ss_pred EEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccC-CeEEEE
Q 001367 815 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGLV 892 (1091)
Q Consensus 815 ~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~-~V~~l~ 892 (1091)
+|+..+ .|.|.+....|++.+.+++ ..+.|..++|+. +++.|.+.+.+|.|.+||+....++.++....+ .-++++
T Consensus 317 fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~ 394 (514)
T KOG2055|consen 317 FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLC 394 (514)
T ss_pred eEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeee
Confidence 777776 5778888888888887776 667899999998 788888888899999999999998888874322 346678
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCce-eeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE---ecCeEEEEEcCCcce
Q 001367 893 FSDALNILVSSGGDAQIFVWDVDGWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTC 968 (1091)
Q Consensus 893 ~spdg~~las~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~---~d~~i~vwd~~~~~~ 968 (1091)
.|++|.+||+||..|.|.|||.++.-. ...+++........ .|++++|++|+..||.+ ..+.+++-.+.+...
T Consensus 395 ~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt---~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV 471 (514)
T KOG2055|consen 395 ISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT---AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV 471 (514)
T ss_pred ecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe---eeeeeeeCcchhhhhhhhhccccceEEEeccceee
Confidence 889999999999999999999765221 11234444444433 79999999999999984 456899999888777
Q ss_pred eeeeecCC--ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 969 LKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 969 ~~~~~~~h--~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
...|.... -+.|+|++|||.|.+||.|..+|.|.+|.+.
T Consensus 472 FsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 472 FSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 76665432 5689999999999999999999999999874
No 128
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.2e-22 Score=191.98 Aligned_cols=319 Identities=13% Similarity=0.191 Sum_probs=233.4
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CCC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS 409 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 409 (1091)
..|.+.|..+...+...+++.+|+.||.|.|||++........-+ +-+ ..|. .....-.+|.-.|..+.|-| |..
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeecCc
Confidence 568889999999987656889999999999999976542211000 000 0111 12233568999999999999 777
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCC-ceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
.+.+++.|.+++|||..+-+... .+ .-.+.|.+-++||-.. ..++++|..|-.|++-|+.+|.+-+++.||.+.|
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred eeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 88999999999999999865433 23 3456788888888543 3367788888899999999999999999999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
.++.|+|..+ -.|++|+.||.|++||++... +..++.|..+++..
T Consensus 192 laV~Wsp~~e-~vLatgsaDg~irlWDiRras----------------------------------gcf~~lD~hn~k~~ 236 (397)
T KOG4283|consen 192 LAVEWSPSSE-WVLATGSADGAIRLWDIRRAS----------------------------------GCFRVLDQHNTKRP 236 (397)
T ss_pred EEEEeccCce-eEEEecCCCceEEEEEeeccc----------------------------------ceeEEeecccCccC
Confidence 9999988754 688999999999999987531 11333333333322
Q ss_pred EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC----CCCCCceEEEccCCCEEEEEECCC
Q 001367 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----GLPENPRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~~~~~dg 644 (1091)
..++....|.+.+..++|+.++.++++.+.|..+++|+..+|+....-.++. ....-..+. +.+...++..-.++
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~ 315 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG 315 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCC
Confidence 3333233345899999999999999999999999999999886543221110 000001122 33445566666679
Q ss_pred eEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccc
Q 001367 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKP 714 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~ 714 (1091)
.+.++++-++..++.+..|...+.+.++ .|+-+...++..|+.+..|..
T Consensus 316 ~lall~~~sgs~ir~l~~h~k~i~c~~~---------------------~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 316 SLALLNLLEGSFVRRLSTHLKRINCAAY---------------------RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eEEEEEccCceEEEeeecccceeeEEee---------------------cCchhhhhccccCCccccccc
Confidence 9999999999999999999888888887 666777888888888888875
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=205.30 Aligned_cols=287 Identities=14% Similarity=0.214 Sum_probs=233.5
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC-EEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLGV 413 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~las 413 (1091)
+.|++|.|+|..+ +|.+++.||+++||.+.........++ .--..+|.+.+|.|+|. .+++
T Consensus 214 ~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~-----------------~l~~fPi~~a~f~p~G~~~i~~ 275 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSI-----------------HLEKFPIQKAEFAPNGHSVIFT 275 (514)
T ss_pred CCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheee-----------------eeccCccceeeecCCCceEEEe
Confidence 4999999999998 789999999999999865443322221 12457999999999999 8899
Q ss_pred EECCCEEEEEEeeCCcccceeEEEeccc-cCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEe
Q 001367 414 AYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 492 (1091)
++.....+.||+.+.+..+ +..+.++. ..+.....|++++ +|+..|..|.|.+.-..+++.+.+++ -.+.|..++
T Consensus 276 s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~ 351 (514)
T KOG2055|consen 276 SGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFT 351 (514)
T ss_pred cccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeEE
Confidence 9999999999999977543 33444554 3677888999999 89999999999999999999998886 677899999
Q ss_pred ecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCC-cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC------c
Q 001367 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------G 565 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~------~ 565 (1091)
|+ .++..|++++.+|.|.+||++....+..+...++ .-++++.++++.++|+|+. .|.|.|||..+ .
T Consensus 352 fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 352 FS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTNP 425 (514)
T ss_pred Ee--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCCC
Confidence 95 5778999999999999999999988887765544 4578889999999999976 67899999653 3
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCC-CCCCCCceEEEccCCCEEEEEEC
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
+++..+.... ..|+++.|+++.+.|+.+| .+..+++-++.+......++.. .....|+|++|+|.+.++|+|..
T Consensus 426 kPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 426 KPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred Cchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 4555555544 7899999999999988877 5678999998887766665543 33456899999999999999999
Q ss_pred CCeEEEEECC
Q 001367 643 ENRIKILETP 652 (1091)
Q Consensus 643 dg~i~iwd~~ 652 (1091)
+|.+.+|.+.
T Consensus 503 ~grv~l~kL~ 512 (514)
T KOG2055|consen 503 AGRVHLFKLH 512 (514)
T ss_pred CCceeeEeec
Confidence 9999999864
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.9e-22 Score=193.13 Aligned_cols=299 Identities=15% Similarity=0.196 Sum_probs=223.3
Q ss_pred CCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE
Q 001367 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1091)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1091)
..|.++..+|.... -.|+.||+.|. +||+|..||.|.|||+.|...-+. +.+|..+|+
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~ 69 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT 69 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence 45777777776443 79999999997 789999999999999998764433 889999999
Q ss_pred EEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
+++||+||+.|++++.|..|.+||+..|..+++. ....+|+.+.|.|-.....+++- .+..-.+-++..++.. .
T Consensus 70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~-~ 143 (405)
T KOG1273|consen 70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHS-V 143 (405)
T ss_pred EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCcee-e
Confidence 9999999999999999999999999999877643 25678999999997766344433 3444455555443211 1
Q ss_pred ec-CCCcceEEE--eecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC-CcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 481 FE-GHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 481 ~~-~~~~~v~~~--~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
+. ...+..... +-...+.|+++++|...|.+.++|.++.+....++... ..|..+.++..|++++..+. +..
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv 219 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV 219 (405)
T ss_pred ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence 11 111111111 11235678899999999999999999998888777766 78999999999999999876 778
Q ss_pred EEEEecCCc-------e--eeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCc
Q 001367 557 LVEWNESEG-------A--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1091)
Q Consensus 557 i~iwd~~~~-------~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1091)
|+.|+++.- + +.+.++..- .+..-.+++|+.+|.++++++ ....++||....|.+++.+.+..+ ....
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~ 297 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELL 297 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hhee
Confidence 999987621 1 112222111 123456789999999998876 456799999999999999987654 2467
Q ss_pred eEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 627 RICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
.+.|+|-...+++. ..|.+++|.....
T Consensus 298 DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 298 DVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ecccccceeeeeec-cCCceEEEEeecc
Confidence 78899988777777 6699999987643
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.1e-22 Score=203.90 Aligned_cols=293 Identities=15% Similarity=0.206 Sum_probs=229.9
Q ss_pred EEEEEcCC-CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC-CCEEEEEEee
Q 001367 349 LLLVGTNV-GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYH 426 (1091)
Q Consensus 349 llasg~~d-g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~~i~iwd~~ 426 (1091)
++.+++.| .++.+||+.||....+.. .+. .+.+|.- -+. .+.|++++.. ...+.+|.+.
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~yk-------g~~------~a~~~sl----~~l--~~~yllsaq~~rp~l~vw~i~ 69 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYK-------GSY------LAQAASL----TAL--NNEYLLSAQLKRPLLHVWEIL 69 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEec-------Ccc------cccchhh----hhh--chhheeeecccCccccccccC
Confidence 34444555 459999999998765411 000 0111110 011 2367777754 4579999997
Q ss_pred CCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEe
Q 001367 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506 (1091)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 506 (1091)
......+. .--.++|.+++-+|+|. +|+.|+..|.|++|.+.+|..+..+.+|...|+++.| +.||.+|++|+
T Consensus 70 k~~~~~q~---~v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTgs 142 (476)
T KOG0646|consen 70 KKDQVVQY---IVLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITGS 142 (476)
T ss_pred chhhhhhh---cccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEecC
Confidence 65544322 12456899999999998 7888889999999999999999999999999999999 66889999999
Q ss_pred cCCeEEEEecC---------CCCceeeecCCCCcEEEEEEcCC--CCEEEEEecCCCCceEEEEEecCCceeeEEEeccc
Q 001367 507 VDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1091)
Q Consensus 507 ~dg~i~iwd~~---------~~~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1091)
.||.|.+|++- +......+..|.-+|+.+...+- ..++++++. |.++++||+..|.++..+....
T Consensus 143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecCC
Confidence 99999999763 34456678889999999887764 457888876 7789999999999988887644
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------------eeEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001367 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----------------QLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1091)
Q Consensus 576 ~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1091)
.+.+++.+|.+..+++|+++|.|.+.++..- ..+..+.+|.....|+|++++-||.+|++
T Consensus 219 ----si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 219 ----SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred ----cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 8999999999999999999999999876532 23344555555458999999999999999
Q ss_pred EECCCeEEEEECCCCCeecccccccccceeeeeccc
Q 001367 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
|+.||.+.|||+.+.++++++....++|+.+.+.|.
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 999999999999999999998888889999888654
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=5.6e-21 Score=209.27 Aligned_cols=289 Identities=11% Similarity=0.052 Sum_probs=211.7
Q ss_pred EEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE-EEEECCCEEEEEEeeC
Q 001367 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG 427 (1091)
Q Consensus 349 llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~~ 427 (1091)
++++++.|+.|.+||+.+++.+.. +.++ ..+.+++|+|+|+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 678999999999999999886653 3333 346789999999987 5667889999999998
Q ss_pred CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEec
Q 001367 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507 (1091)
Q Consensus 428 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 507 (1091)
++... .+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++++ +++.++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEec
Confidence 76543 3434433 567899999984 345556789999999999888777753 2345677774 56778888877
Q ss_pred CC-eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccc----cccceE
Q 001367 508 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS 582 (1091)
Q Consensus 508 dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~ 582 (1091)
++ .+.+||..+......... .....+++|+|+++++++.+. .++.|.+||+.+++.+..+..+.. ......
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789877655443322 234567899999998876542 256799999999987776653210 011234
Q ss_pred EEEEcCCCCEEEE-EeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE-CCCeEEEEECCCCCeeccc
Q 001367 583 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAA 660 (1091)
Q Consensus 583 ~v~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 660 (1091)
.++|+|+++++++ .+.++.+.+||..+++.+..+.... .+.+++|+|+|++|+++. .++.|.+||+.+++.+..+
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQ---RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCC---CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 6889999998665 4557789999999988876654322 478999999999998864 5899999999999888877
Q ss_pred ccccccceeeeec
Q 001367 661 GVLSDNLRKLSVN 673 (1091)
Q Consensus 661 ~~~~~~v~~~~~~ 673 (1091)
... ...+.++++
T Consensus 288 ~~~-~~~~~~~~~ 299 (300)
T TIGR03866 288 KVG-RLPWGVVVR 299 (300)
T ss_pred Ecc-cccceeEeC
Confidence 654 333666553
No 133
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=2.4e-21 Score=204.16 Aligned_cols=456 Identities=13% Similarity=0.123 Sum_probs=292.2
Q ss_pred CeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce
Q 001367 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 522 (1091)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 522 (1091)
.|..++|-|||.+++++. +..+.+||...|..++++++|...|+++++ +.||..+++|+.|+.|.+|+-.-....
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEeccccccee
Confidence 799999999999744443 337999999999999999999999999999 568899999999999999965432222
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeE
Q 001367 523 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1091)
Q Consensus 523 ~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i 602 (1091)
--.|+..|.|+.|+|-...|++|+-+. .-+|........+ .+. ...+.+++|..||++++.|-.+|+|
T Consensus 89 --kYSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K-~ks----s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 89 --KYSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSK-HKS----SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred --eeccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHh-hhh----heeEEEeeecCCCcEEEEeccCceE
Confidence 224778999999999999999998542 6678765543322 111 2578899999999999999999999
Q ss_pred EEEECCCCeeEEEEeCCCCCCCCceEEEccCC-----CEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccc
Q 001367 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677 (1091)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 677 (1091)
.+-+....+.+..-...+...+|.+++|+|.. ..+++.....++.++.+... .+..-+...-.-.|+.+
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisY----- 230 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISY----- 230 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhhee-----
Confidence 99876544444444444556789999999953 46788888888888877633 22222222222223333
Q ss_pred cccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceE
Q 001367 678 VTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 757 (1091)
Q Consensus 678 ~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i 757 (1091)
-++|.+++.|+.|+.+.+|.-+.-.- .++ . .....|..++..|++++++.++.||++
T Consensus 231 ----------------f~NGEy~LiGGsdk~L~~fTR~GvrL---GTv--g--~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 231 ----------------FTNGEYILLGGSDKQLSLFTRDGVRL---GTV--G--EQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred ----------------ccCCcEEEEccCCCceEEEeecCeEE---eec--c--ccceeEEEEEEccCCceEEEEEccCee
Confidence 67888999999999888887441111 111 1 146789999999999999999999999
Q ss_pred EEeecCCccccc---------------------ccce---------------------eeccCCccccCCCCCceeeecC
Q 001367 758 LMWRWPRNDLTL---------------------STEA---------------------TTKVPPRLYQPRHGPQFMVNDT 795 (1091)
Q Consensus 758 ~vw~~~~~~~~~---------------------~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 795 (1091)
..|++-.+.... .+.. .-...+.+|...++. ......
T Consensus 288 ACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~-~~~mhY 366 (1081)
T KOG1538|consen 288 ACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSED-LSDMHY 366 (1081)
T ss_pred ehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccc-cccchh
Confidence 999986544300 0000 000112223222222 000000
Q ss_pred CCC-CCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEE--EEEcCCCCcEEEEEeCCCeEEEEec
Q 001367 796 TDS-NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATS--LAFNPHDNNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 796 ~~~-~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~--l~~s~~~~~~la~g~~dg~i~iwd~ 872 (1091)
+.. .-.....+--+--.+..++.+.+..+..+|...-+. +... -.+-|+- +.=.|.+..-|++|..||.|.-.=+
T Consensus 367 ~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~ 444 (1081)
T KOG1538|consen 367 RVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFV 444 (1081)
T ss_pred HHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEe
Confidence 000 000001111111134455666666777777543211 1100 0000111 1112225567888998986654434
Q ss_pred cCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 873 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 873 ~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
++.-++.. ......|.|+..+...+.||+..+.++..++|+.+++. .++.+ .+.+++|+....-+.+
T Consensus 445 dN~~PiLl-~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~wNT~~E~Mlc 511 (1081)
T KOG1538|consen 445 DNLFPILL-LKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVAWNTQCEDMLC 511 (1081)
T ss_pred cCCchhhe-ecccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEEeeccccceEE
Confidence 44333322 23456799999999999999999999999999999763 22322 4778999887655554
Q ss_pred -EecCeEEE
Q 001367 953 -VHETHLAI 960 (1091)
Q Consensus 953 -~~d~~i~v 960 (1091)
+..|.+.|
T Consensus 512 fT~~g~L~V 520 (1081)
T KOG1538|consen 512 FTGGGYLNV 520 (1081)
T ss_pred EecCCceEE
Confidence 55565544
No 134
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.4e-22 Score=188.63 Aligned_cols=255 Identities=16% Similarity=0.206 Sum_probs=203.9
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC--
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-- 406 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-- 406 (1091)
.-.+|.+.|..+...--|++ |||++.|++|+|+.+....... ....|.||+++|..++|..
T Consensus 6 idt~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk 68 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPK 68 (299)
T ss_pred hhhhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccc
Confidence 34689999999999888984 6999999999999998765421 1223899999999999987
Q ss_pred CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-c--eeEEecC
Q 001367 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S--RTYSFEG 483 (1091)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~--~~~~~~~ 483 (1091)
-|.+||+++.||.|.||.-++|+ ..+..+...|...|++++|.|.+--+.|++++.||.|.|.+.++. . .......
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 89999999999999999999884 444556778999999999999988889999999999999987654 1 2234568
Q ss_pred CCcceEEEeecccCC-c-----------eEEEEEecCCeEEEEecCCCCc--eeeecCCCCcEEEEEEcCCC----CEEE
Q 001367 484 HGAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRLF 545 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~----~~l~ 545 (1091)
|.-.|+++++.|..- | ..|++|+.|..|+||+.++..- ...+..|...|..++|.|.- .+|+
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 999999999977521 1 5699999999999999987632 23478899999999999964 4678
Q ss_pred EEecCCCCceEEEEEecCCc--ee-eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001367 546 SCGTSKEGESFLVEWNESEG--AI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~--~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1091)
+|+. ++.+.||..... .. ...+.... ..+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 228 S~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 228 SCSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 8875 667999976521 11 11222222 679999999999999999999999999754
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2e-20 Score=204.93 Aligned_cols=279 Identities=17% Similarity=0.233 Sum_probs=199.2
Q ss_pred CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEE-EEEECCCeEEEEECCCCCeeccccccccccee
Q 001367 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1091)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 669 (1091)
..+++++.|+.+++||+.+++.+..+..+.. +..++|+|+++.+ ++++.++.|++||..+++....+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------- 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR---PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS------- 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC---CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-------
Confidence 4678889999999999999998888875433 5779999999876 5566788999998765422211100
Q ss_pred eeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEE
Q 001367 670 LSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF 749 (1091)
Q Consensus 670 ~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 749 (1091)
T Consensus 72 -------------------------------------------------------------------------------- 71 (300)
T TIGR03866 72 -------------------------------------------------------------------------------- 71 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEE
Q 001367 750 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLY 827 (1091)
Q Consensus 750 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iw 827 (1091)
+ ..+..++++|+++.+++++ ++.+++|
T Consensus 72 --------------------------------------------------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 72 --------------------------------------------------G-PDPELFALHPNGKILYIANEDDNLVTVI 100 (300)
T ss_pred --------------------------------------------------C-CCccEEEECCCCCEEEEEcCCCCeEEEE
Confidence 0 0122455666666555443 5778888
Q ss_pred EccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEE-eC
Q 001367 828 IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-GG 905 (1091)
Q Consensus 828 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-s~ 905 (1091)
|+.+++.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.. ...+.+++|+|+|++|+.+ ..
T Consensus 101 d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~ 177 (300)
T TIGR03866 101 DIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEI 177 (300)
T ss_pred ECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCC
Confidence 8887777666652 33467899999 888888888765 577889988877655432 2346789999999988544 46
Q ss_pred CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE--EecCeEEEEEcCCcceeeeeecCCccCEEEE
Q 001367 906 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQA 983 (1091)
Q Consensus 906 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v 983 (1091)
++.|++||+.+++............+.. ......++|+|+|+++++ +.++.+.+||..+++.+.... +...+.++
T Consensus 178 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~ 254 (300)
T TIGR03866 178 GGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQL 254 (300)
T ss_pred CCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceE
Confidence 9999999999876433221111111100 112457899999998655 456789999999888776543 34578999
Q ss_pred EEeeCCCEEEEE-EcCCcEEEEeCCCCceEEEee
Q 001367 984 TFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 984 ~fs~dg~~l~t~-~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
+|+|+|++|+++ +.+|.|.+||+.+++.+.++.
T Consensus 255 ~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 255 AFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 999999999876 468999999999999987776
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.3e-21 Score=186.89 Aligned_cols=305 Identities=14% Similarity=0.165 Sum_probs=218.1
Q ss_pred cccccEEEEEEec-CCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEe
Q 001367 731 VKANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 809 (1091)
Q Consensus 731 ~~~~~i~~~~~s~-dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 809 (1091)
.|.+.|.++.+.+ .|+++++++.||.+.+||+............... .|+... -...+|...|..+.|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~----------~c~v~~-~h~~~Hky~iss~~W 109 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH----------KCIVAK-QHENGHKYAISSAIW 109 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe----------eeeccc-cCCccceeeeeeeEE
Confidence 3788999999876 5899999999999999999765432211111110 111111 112368899999999
Q ss_pred cCC-CCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEeccCcceeeeecccc
Q 001367 810 SKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHS 885 (1091)
Q Consensus 810 s~d-g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~--~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~ 885 (1091)
-|- .-++.+++ |.++++||..|.+....|+ -.+.|.+-++||- ...++|+|..|-.|++.|+.+|.....+.||.
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 884 44555555 8999999999998888876 4556777777762 23588999999999999999999999999999
Q ss_pred CCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCc-eee------eeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecC
Q 001367 886 KRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWG-IQT------CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 956 (1091)
Q Consensus 886 ~~V~~l~~spdg~~-las~s~Dg~i~vwd~~~~~-~~~------~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~ 956 (1091)
+.|.++.|||...+ |++|+.||.|++||+.... +.. .+..+..+....+.+.+..++|+.||.++++ +.|.
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 99999999998776 7899999999999998641 100 0111112222233357899999999999998 8999
Q ss_pred eEEEEEcCCcceeeeeecC--Cc---cCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccc
Q 001367 957 HLAIYEAEELTCLKQWFPI--SS---VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1031 (1091)
Q Consensus 957 ~i~vwd~~~~~~~~~~~~~--h~---~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1031 (1091)
.+++|+..+|+.-...+.. |+ +.-..+. +.+...++---.++.+.++++-+|..+..+. .|...|
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~--------~h~k~i- 338 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS--------THLKRI- 338 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee--------ccccee-
Confidence 9999999988643321111 11 1111133 4444455555567899999999999887776 222223
Q ss_pred eeEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 1032 PHAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1032 ~~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
.|.++.| +=+...+|..|+.+..|-+
T Consensus 339 -~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 339 -NCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred -eEEeecC-chhhhhccccCCccccccc
Confidence 3667888 4678999999999999987
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=3.8e-22 Score=203.68 Aligned_cols=283 Identities=12% Similarity=0.151 Sum_probs=231.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc---eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEE
Q 001367 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~ 603 (1091)
.|+.-|..+++|...+++++|+ .+.|.+||+... .++..+.... ..+.|+++.+.|||+.|++|++-.++.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-----CCeEEEeeccCCCCCCccccccccC-cccceeeeEecCCCceEEeccccceee
Confidence 4566778889999999999986 677999999754 2233333221 246799999999999999999999999
Q ss_pred EEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccc
Q 001367 604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 683 (1091)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (1091)
|||+....+............++.++.+||.+..+++..||.|.|||+.+...++.+.+|.+.+.|+.+
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi----------- 559 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI----------- 559 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe-----------
Confidence 999987665544444444456789999999999999999999999999999999999999999999988
Q ss_pred cCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecC
Q 001367 684 ANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 763 (1091)
Q Consensus 684 ~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~ 763 (1091)
++||..|.+|+-|+++|.||+......+... -...|.++.++|.+.+++++-.++.+.|....
T Consensus 560 ----------s~dGtklWTGGlDntvRcWDlregrqlqqhd-------F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 560 ----------SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred ----------cCCCceeecCCCccceeehhhhhhhhhhhhh-------hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 8889999999999999999987544333222 35689999999999999999999988875533
Q ss_pred CcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCC
Q 001367 764 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS 842 (1091)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~ 842 (1091)
... ..... -|..-|.++.|++-|+++++.+ |+-+-.|.+.-|..+...+ ..
T Consensus 623 kp~-----------------------kyqlh----lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~ 674 (705)
T KOG0639|consen 623 KPE-----------------------KYQLH----LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ES 674 (705)
T ss_pred Ccc-----------------------ceeec----ccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-cc
Confidence 211 11111 2889999999999999999887 8899999988887776665 56
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEec
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg~i~iwd~ 872 (1091)
..|.++.+|. |.++|++|+.|+...+|.+
T Consensus 675 SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 675 SSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred Ccceeeeecc-CceEEEecCCCcceEEEEE
Confidence 7899999999 8999999999998888875
No 138
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3.3e-21 Score=186.44 Aligned_cols=269 Identities=14% Similarity=0.105 Sum_probs=209.2
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
....|+++.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.+ +++|+.||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 56899999999999999999999999999999874332 235899999999998765 89999999999999998
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
+... .+..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++.. .|+.|++++. +
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----D 154 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----C
Confidence 8765 455699999999987543 479999999999999998754444444433 6766665 4567777665 5
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeEEEEeCCCC-------CC
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP 623 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 623 (1091)
..+.+||+++.......... .-+..++++++-|++.-+++++-||.|.+=.++.. +....+..|.. ..
T Consensus 155 r~v~iyDLRn~~~~~q~reS-~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRES-SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhccc-cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 67999999876543321111 11357899999999999999999999988655544 23333443322 23
Q ss_pred CCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccc
Q 001367 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 681 (1091)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (1091)
+|++++|+|--+.+++|+.||.|.+||..+.+.+..+......|..++|+.++..+|+
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAi 291 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAI 291 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEE
Confidence 5899999999899999999999999999999999999888888999999544444433
No 139
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8.5e-22 Score=189.96 Aligned_cols=282 Identities=15% Similarity=0.213 Sum_probs=213.4
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|++.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 6789999999999999999 8999999999999999999999
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCC----cEEEEEEcCCCCEEEEEecCCCCc
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
+.+. ...+|+.+.|+|......+++--.. .-.+-++........-....+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~-sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEE-SPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecC-CcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9886 7789999999988776555554333 344444444222221111111 1223468899999999975 7
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------eeE--EEEeCCCCCCCC
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------QLL--TTIDAGGGLPEN 625 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v 625 (1091)
|.+.++|..+-+++..++-.. ...|..+.++..|++++.-+.|+.||.|++..- ++. +.+..--....-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 789999999999988877544 467899999999999999999999999987631 111 111110011124
Q ss_pred ceEEEccCCCEEEEEEC-CCeEEEEECCCCCeeccccccc-ccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 626 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
.+++|+.+|.+++.++. ...++||....|..++.+.|.. .....+.|.|. ...+++-
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~---------------------rp~i~si 311 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV---------------------RPIIASI 311 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc---------------------eeeeeec
Confidence 68999999999988775 5779999999999999988877 55666667443 3334444
Q ss_pred cccccccccccc
Q 001367 704 EAENKSEVEKPL 715 (1091)
Q Consensus 704 ~~d~~i~~w~~~ 715 (1091)
..|.+.+|...
T Consensus 312 -~sg~v~iw~~~ 322 (405)
T KOG1273|consen 312 -ASGVVYIWAVV 322 (405)
T ss_pred -cCCceEEEEee
Confidence 45889999854
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.7e-21 Score=197.71 Aligned_cols=304 Identities=17% Similarity=0.196 Sum_probs=228.4
Q ss_pred eeeecccCCCCcEEEEEcCCCc-eEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~-~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
......-|...|++++|+|... .++|+|+..|+|-+||+.+.+...... ..+..|..+|.++.|
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F 242 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKF 242 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEe
Confidence 3445567788999999999876 799999999999999996444333211 127789999999999
Q ss_pred CC-CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce-eEEec
Q 001367 405 SP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFE 482 (1091)
Q Consensus 405 sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~ 482 (1091)
+| +-..+.+.+.||+|++-|++++.. ..+..+......+..+.|+.+.. .++.++.=|...+||.+++.. ...+.
T Consensus 243 ~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 243 SPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred cCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhh
Confidence 99 567888999999999999998642 22223333445678888988887 677788778999999997655 56677
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce----eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
-|...|++++++|... .++++++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. +..|+
T Consensus 320 lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IR 394 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIR 394 (498)
T ss_pred hhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceE
Confidence 7999999999988754 79999999999999999865433 345568889999999998888887765 67799
Q ss_pred EEecC----CceeeEEEeccccccc--ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 559 EWNES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 559 iwd~~----~~~~~~~~~~~~~~~~--~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
+||.. .-.+...+.....+.. ......|.|+..++++|-.-..|-|+|-..++.+..+..+....-..-..|+|
T Consensus 395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP 474 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP 474 (498)
T ss_pred EeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc
Confidence 99983 2233333332221112 23446799999999999999999999999999888775554322223457999
Q ss_pred CCC-EEEEEECCCeEEEEECC
Q 001367 633 NGT-LLAVIANENRIKILETP 652 (1091)
Q Consensus 633 ~~~-~l~~~~~dg~i~iwd~~ 652 (1091)
-+. +++-++..|.|+||..+
T Consensus 475 ~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 475 MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccceeccCCccceEEEEecC
Confidence 777 44445557899998654
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=199.94 Aligned_cols=254 Identities=16% Similarity=0.169 Sum_probs=204.5
Q ss_pred eEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeC
Q 001367 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1091)
Q Consensus 348 ~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 427 (1091)
+++++-.....+.+|.+........ ..+ -.++|.|++-+|+|.+|+.|+..|.+++|.+.+
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q----------------~~v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss 112 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQ----------------YIV---LPGPVHALASSNLGYFLLAGTISGNLYLWELSS 112 (476)
T ss_pred heeeecccCccccccccCchhhhhh----------------hcc---cccceeeeecCCCceEEEeecccCcEEEEEecc
Confidence 4444444455677887765544431 111 236899999999999999999999999999999
Q ss_pred CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC---------CCceeEEecCCCcceEEEeecccCC
Q 001367 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---------TGSRTYSFEGHGAPVYSLCPHAKEN 498 (1091)
Q Consensus 428 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~ 498 (1091)
|..+. .+.+|-.+|+++.|+.||. +++|||.||.|.+|++. +-++++.|..|.-+|+.+...+.+-
T Consensus 113 G~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~ 187 (476)
T KOG0646|consen 113 GILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT 187 (476)
T ss_pred ccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc
Confidence 98777 5679999999999999999 89999999999999763 3467788999999999999877766
Q ss_pred ceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC--------------
Q 001367 499 IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-------------- 564 (1091)
Q Consensus 499 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-------------- 564 (1091)
..++++++.|.++++||+..+..+..+..+ ..+.+++.+|.++.+++|+. +|.|.+.++..
T Consensus 188 ~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~~ 262 (476)
T KOG0646|consen 188 NARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGRH 262 (476)
T ss_pred cceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCC----cceEEeeehhcCCcccccccccccc
Confidence 679999999999999999998777666543 47899999999999999876 55677765532
Q ss_pred --ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC
Q 001367 565 --GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 565 --~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
+..+..+.||. ....|+|++.+-||..|++|+.||+|+|||+.+.++++++... .++|+.+.+.|-
T Consensus 263 ~~~t~~~~~~Gh~-~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 263 EENTQINVLVGHE-NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred cccceeeeecccc-CCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence 23455667776 1138999999999999999999999999999999999888732 236788887663
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.2e-21 Score=204.86 Aligned_cols=325 Identities=12% Similarity=0.155 Sum_probs=246.8
Q ss_pred CCcccCCCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecC
Q 001367 315 GETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394 (1091)
Q Consensus 315 ~~~~~~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1091)
.+.....+|..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++....
T Consensus 381 sp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~-------------------- 439 (733)
T KOG0650|consen 381 SPKDLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ-------------------- 439 (733)
T ss_pred ChhhcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------
Confidence 344556778899999999999999999999998 67999999999999999999997532
Q ss_pred CCccEEEEEECCCCC--EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEe----eCCCcEE
Q 001367 395 PGVSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC----GDDKTIK 468 (1091)
Q Consensus 395 h~~~V~~l~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~----~~d~~i~ 468 (1091)
-.+.|.|++|+|.+. .||++-... +.|-+..-|..+.. +. ... .|+++ ..++.+.
T Consensus 440 ~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~-----~~-----------t~e--ll~~~~~~~~p~~~~~ 500 (733)
T KOG0650|consen 440 FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV-----GP-----------TKE--LLASAPNESEPDAAVV 500 (733)
T ss_pred ecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh-----cc-----------hhh--hhhcCCCccCCcccce
Confidence 235899999999664 556554444 66666555532211 00 001 12222 3356778
Q ss_pred EEeCCCCc----eeEEecCCCcceEEEeecccCCceEEEEEecC---CeEEEEecCCCCceeeecCCCCcEEEEEEcCCC
Q 001367 469 VWDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1091)
Q Consensus 469 iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~ 541 (1091)
.|.-.... -++..-.|...|..+.|+. .|.||++...+ ..|.|.++.....+..+....+.+.++.|+|..
T Consensus 501 ~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~ 578 (733)
T KOG0650|consen 501 TWSRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK 578 (733)
T ss_pred eechhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC
Confidence 88644211 1334456899999999965 56799887654 458899998877777777778899999999999
Q ss_pred CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeEEEEeCCC
Q 001367 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGG 620 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~ 620 (1091)
.+|++++ ...|++||+..+++++.+.... ..|..++.+|.|..|+.|+.|+.+..+|+.-. ++.+++..|.
T Consensus 579 p~lfVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~ 650 (733)
T KOG0650|consen 579 PYLFVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE 650 (733)
T ss_pred ceEEEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh
Confidence 9998887 4569999999988888777655 78999999999999999999999999999754 5566666665
Q ss_pred CCCCCceEEEccCCCEEEEEECCCeEEEEECC------CC---Ceeccccccccc----ceeeeeccccccccccccCCc
Q 001367 621 GLPENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGS 687 (1091)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~------~~---~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~g~ 687 (1091)
. .+..|+|++.-.++++|+.||++.|+-.. .+ -++..+++|... |..+.|
T Consensus 651 ~--avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~w--------------- 713 (733)
T KOG0650|consen 651 K--AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIW--------------- 713 (733)
T ss_pred h--hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecc---------------
Confidence 4 68999999999999999999999998532 11 234556666544 444445
Q ss_pred ccCCCCCCCCCcccccccccccccc
Q 001367 688 VSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 688 ~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
.|...++++++.||+|++|
T Consensus 714 ------HP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 714 ------HPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ------cCCCceEEecCCCceEEee
Confidence 6778889999999999998
No 143
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=3.6e-20 Score=195.42 Aligned_cols=277 Identities=13% Similarity=0.150 Sum_probs=204.7
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
+..| .|..++|-|||..|++.++ ..+.|||+..|..+.+ +++|...|.|++||.||+
T Consensus 10 ~~~h--ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGk 66 (1081)
T KOG1538|consen 10 KAEH--CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGK 66 (1081)
T ss_pred cccc--chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCc
Confidence 3445 8999999999987765544 6899999999998876 889999999999999999
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
++|+|+.|..|.+|+.+-...++ ..|.+.|.|+.|+|-.. .|++++-. ..-+|..+..... .|...+.
T Consensus 67 rFASG~aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R 134 (1081)
T KOG1538|consen 67 RFASGSADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSR 134 (1081)
T ss_pred eeccCCCceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhhee
Confidence 99999999999999977544332 26999999999999988 68888754 4678986544332 2444444
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeec---CCCCcEEEEEEcCCCC-----EEEEEecCCCCceEEEEEe
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~-----~l~~~~~~~~~~~~i~iwd 561 (1091)
.++.++++||++++.|-.+|+|.+-+-. +++...+. +.+.+|.+++|+|... .+++.-. ..++..+.
T Consensus 135 ~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~ 209 (1081)
T KOG1538|consen 135 IICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQ 209 (1081)
T ss_pred EEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEE
Confidence 4444448899999999999999988543 33333333 3566899999999643 2332221 22233333
Q ss_pred cCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
+ +|+.+..-.... -...|+.+.++|.+++.|+.|+.+.+|-. .|-.+.++.... ..|+.++..|+++.++.|+
T Consensus 210 L-sG~~Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 210 L-SGKQIGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred e-cceeecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEE
Confidence 3 233332222222 45678899999999999999999999974 455566654433 3799999999999999999
Q ss_pred CCCeEEEEECCC
Q 001367 642 NENRIKILETPE 653 (1091)
Q Consensus 642 ~dg~i~iwd~~~ 653 (1091)
.||+|..|++..
T Consensus 283 qDGTiACyNl~f 294 (1081)
T KOG1538|consen 283 QDGTIACYNLIF 294 (1081)
T ss_pred ccCeeehhhhHH
Confidence 999999998763
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=8.8e-23 Score=218.08 Aligned_cols=236 Identities=17% Similarity=0.287 Sum_probs=212.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 34588999999997789999999999999999987654443 5789999999999999988 899999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
++.++.++++.+|...+.++.|+| -+.+.++|+.|..+++||.+...+...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 999999999999999999999966 4578999999999999999999999999999999999999999999999875
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
+..+.+||...|+....|.+|. ..+.++.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn 247 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN 247 (825)
T ss_pred --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence 6789999999999999999988 89999999999888888999999999999998888776654 3478999999
Q ss_pred cCCCEEEEEECC
Q 001367 632 KNGTLLAVIANE 643 (1091)
Q Consensus 632 ~~~~~l~~~~~d 643 (1091)
|+++.+++|...
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 999999888664
No 145
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=5.1e-21 Score=195.08 Aligned_cols=252 Identities=19% Similarity=0.326 Sum_probs=200.9
Q ss_pred cCCCccEEEEEECCC-CCEEEEEECCCEEEEEEeeCCccc-------ceeEEEeccccCeeEEEEcCCCCceEEEEeeCC
Q 001367 393 RDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD 464 (1091)
Q Consensus 393 ~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d 464 (1091)
--|.+.|..+..-|. ...+|+.+..+.|.|||...-... +....+.+|.+.-..++|++.... .+++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence 348999999999995 456667788889999999753322 233368899998888999998765 79999999
Q ss_pred CcEEEEeCCCCc-------eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecC--CCCceeeecCCCCcEEEE
Q 001367 465 KTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 465 ~~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~ 535 (1091)
++|++||+.... ....+.+|...|..++|++... .++++++.|+.+.|||.+ +.+.......|..++.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 999999987532 2466789999999999998754 689999999999999999 556666788899999999
Q ss_pred EEcCCCCE-EEEEecCCCCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCee
Q 001367 536 AYSANGRR-LFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQL 612 (1091)
Q Consensus 536 ~~s~d~~~-l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~~~ 612 (1091)
+|+|-+.+ ||+++. +++|.+||+++. +.+..+.+|. ..|..|.|+|... .|++++.|+.+.+||+..-..
T Consensus 279 ~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 279 AFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred EeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 99996655 555554 777999999875 4567777777 9999999999865 556688999999999875221
Q ss_pred ------------EEEEeCCCCCCCCceEEEccCCC-EEEEEECCCeEEEEECCC
Q 001367 613 ------------LTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE 653 (1091)
Q Consensus 613 ------------~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~ 653 (1091)
...+...++...|..+.|+|+.. .+++++.|+.+.||....
T Consensus 352 eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 352 EQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 12244455666899999999765 577888999999999764
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.5e-21 Score=199.34 Aligned_cols=321 Identities=15% Similarity=0.232 Sum_probs=239.7
Q ss_pred eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC--EEEEEECCCe
Q 001367 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIANENR 645 (1091)
Q Consensus 568 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~ 645 (1091)
-..+.+|. +.|.++...|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.+++|+|.+. .||++..+.
T Consensus 393 ~lvyrGHt---g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 393 ALVYRGHT---GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eeeEeccC---CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecCc-
Confidence 34567777 999999999999999999999999999999999999998765 489999999664 455554443
Q ss_pred EEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc----ccccccccccccccCCcc
Q 001367 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV----EAENKSEVEKPLFARPSE 721 (1091)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~----~~d~~i~~w~~~~~~~~~ 721 (1091)
+.|.+..-|..+..- +....++++ ..++.+..|.-......+
T Consensus 466 ~~ivnp~~G~~~e~~----------------------------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~ 511 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVG----------------------------------PTKELLASAPNESEPDAAVVTWSRASLDELE 511 (733)
T ss_pred eEEeCccccchhhhc----------------------------------chhhhhhcCCCccCCcccceeechhhhhhhc
Confidence 666554433211110 001111111 223456667644322222
Q ss_pred ---cceeecCCccccccEEEEEEecCCCeEEEeecC---ceEEEeecCCcccccccceeeccCCccccCCCCCceeeecC
Q 001367 722 ---CQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 795 (1091)
Q Consensus 722 ---~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1091)
+..+. |...|..+.|+..|.+|++...+ ..+.|+++..... ... +
T Consensus 512 ~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----------------------Q~P--F 562 (733)
T KOG0650|consen 512 KGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----------------------QSP--F 562 (733)
T ss_pred cceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc----------------------cCc--h
Confidence 22332 67899999999999999988764 4566666543321 111 1
Q ss_pred CCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc
Q 001367 796 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875 (1091)
Q Consensus 796 ~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~ 875 (1091)
....+.|.++.|+|...++++++...|+|||+..+..++.+......|..++++| .|.-|+.|+.|+.+..+|+.-.
T Consensus 563 --~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 563 --RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred --hhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccC
Confidence 1256778999999999999999999999999999998888888888999999999 7888888999999999999865
Q ss_pred -ceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC--CCc--eeeeeeeeccCCCcCC-CCCceEEEEcCCCCE
Q 001367 876 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD--GWG--IQTCRSLQTPDGVMTL-APSETHIQFHKDQTR 949 (1091)
Q Consensus 876 -~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~--~~~--~~~~~~~~~~~~~~~~-~~~i~~l~fs~dg~~ 949 (1091)
++.+++.-|...|++++|++.-.+++||+.||++.|+--. +.- ......++.+.||... ...|..+.|+|..-+
T Consensus 640 skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW 719 (733)
T KOG0650|consen 640 SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW 719 (733)
T ss_pred cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence 5678889999999999999999999999999999988421 110 1113456777777651 134888899999999
Q ss_pred EEE-EecCeEEEE
Q 001367 950 FLL-VHETHLAIY 961 (1091)
Q Consensus 950 la~-~~d~~i~vw 961 (1091)
|.+ |.||+|++|
T Consensus 720 LfsAGAd~tirlf 732 (733)
T KOG0650|consen 720 LFSAGADGTIRLF 732 (733)
T ss_pred EEecCCCceEEee
Confidence 998 789999998
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.7e-20 Score=202.51 Aligned_cols=236 Identities=17% Similarity=0.232 Sum_probs=193.5
Q ss_pred CCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCC-CEEEEEe-C
Q 001367 744 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AYLFSAS-G 821 (1091)
Q Consensus 744 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~la~~~-d 821 (1091)
+.++|++++.+|.|.+||+.....+ .....+ ..|...+.++.|++-. .+|++|+ |
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rn---------------------k~l~~f--~EH~Rs~~~ldfh~tep~iliSGSQD 155 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRN---------------------KLLTVF--NEHERSANKLDFHSTEPNILISGSQD 155 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccc---------------------hhhhHh--hhhccceeeeeeccCCccEEEecCCC
Confidence 4567889999999999998752110 000111 1489999999999865 5666777 8
Q ss_pred CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc-ceeeeeccccCCeEEEEECCCCCEE
Q 001367 822 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNIL 900 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l 900 (1091)
|.|++||+...+-..++.+....|+.+.|+|..+..++++.+.|.+++||++.. ++...+.+|.++|.++.|+|++.+|
T Consensus 156 g~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~l 235 (839)
T KOG0269|consen 156 GTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWL 235 (839)
T ss_pred ceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCcee
Confidence 999999999999999999888999999999988899999999999999999864 5678899999999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE----EecCeEEEEEcCCcceeeeeecCC
Q 001367 901 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCLKQWFPIS 976 (1091)
Q Consensus 901 as~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~----~~d~~i~vwd~~~~~~~~~~~~~h 976 (1091)
||||.|++|+|||..+.+.....++.+. .++..+.|-|+..+.++ +.|..|+|||++..-.....+..|
T Consensus 236 ATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH 308 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH 308 (839)
T ss_pred eecCCCccEEEEeccCCCccceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc
Confidence 9999999999999998775554555544 26899999999877554 367889999999877777777889
Q ss_pred ccCEEEEEEee-CCCEEEEEEcCCcEEEEeCCCC
Q 001367 977 SVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 977 ~~~v~~v~fs~-dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
...++.++|-. |-..+.+++.||+|..-.+.++
T Consensus 309 ~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 309 TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred CccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 99999999976 5567889999998876555544
No 148
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.2e-20 Score=203.58 Aligned_cols=285 Identities=16% Similarity=0.259 Sum_probs=217.5
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCccccee-EEEec---cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ-LEIDA---HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~-~~~~~---h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
....+|+.+++-..++.++.. .++||.+......... ...+. -...+..+.|..-..+ +|+|++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence 456677888998888888655 4788877653321111 01111 1124567788754444 8999999999999999
Q ss_pred CC---CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCC-CCEEEEEe
Q 001367 473 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-GRRLFSCG 548 (1091)
Q Consensus 473 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d-~~~l~~~~ 548 (1091)
.. .+.+..|..|...++++.|+.... .+|++|+.||.|++||++.......+......|..+.|+|. +..++++.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 87 566778999999999999987644 69999999999999999999999988888889999999994 55666665
Q ss_pred cCCCCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 549 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
. .|.+++||++.. ++...+..|. ++|.|+.|+|++.+|++||.|+.|+|||+.+.+.......+. ..++.+
T Consensus 197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r 268 (839)
T KOG0269|consen 197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR 268 (839)
T ss_pred C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence 4 678999999864 4566677777 999999999999999999999999999998755433332222 246899
Q ss_pred EEEccCCC-EEEEEE--CCCeEEEEECCCC-CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 628 ICFNKNGT-LLAVIA--NENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 628 v~~s~~~~-~l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
|.|-|+.. +|++++ .|..|+|||+... -+...+..|...++.++|. +.|...+.++
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~--------------------~~d~~~l~s~ 328 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD--------------------SGDRINLWSC 328 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc--------------------CCCceeeEee
Confidence 99999665 455554 3789999999876 4456677888888888885 5566677788
Q ss_pred ccccccccc
Q 001367 704 EAENKSEVE 712 (1091)
Q Consensus 704 ~~d~~i~~w 712 (1091)
+.|+++..-
T Consensus 329 sKD~tv~qh 337 (839)
T KOG0269|consen 329 SKDGTVLQH 337 (839)
T ss_pred cCccHHHHh
Confidence 888876543
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=2.7e-20 Score=196.50 Aligned_cols=313 Identities=13% Similarity=0.125 Sum_probs=217.4
Q ss_pred EEEc--CCCceEEEEEcCCCcEEEEEcCCCCce-eeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC
Q 001367 340 MDFH--PVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1091)
Q Consensus 340 v~fs--pdg~~llasg~~dg~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 416 (1091)
+.|+ |+.+++||.+..||.|.++|....... ....| .-...|...|..++|-|....|++++.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~l--------------k~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQL--------------KKPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhh--------------cccccccceeEeeccCCCceeEEEccC
Confidence 4554 345579999999999999998654332 11111 114569999999999997788999999
Q ss_pred CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce--e-----EEecCCCcceE
Q 001367 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR--T-----YSFEGHGAPVY 489 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~-----~~~~~~~~~v~ 489 (1091)
|.++++||+++++..... .+.||.+.|.+++|.|++.. .|++|+.||.|.|||+.-... + .....|...-
T Consensus 121 DsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p- 197 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP- 197 (720)
T ss_pred Cceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-
Confidence 999999999998776543 46799999999999999886 899999999999999864331 1 0111122110
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEE---EEEcCCCCEEEEEecCCCCceEEEEEecCCce
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR---MAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~---~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1091)
.+.. ...+.......+...|.+ +.+..|...|++++. .|+.|++||++...
T Consensus 198 ------tpsk-----------------p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 198 ------TPSK-----------------PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNY 251 (720)
T ss_pred ------CCCc-----------------hhhccccccccccCceeeeeEEEEEeccceeeeccC---CCcceEEEeecccc
Confidence 0000 001111122333344444 556688999999875 47889999998754
Q ss_pred eeEE--------EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee--EEEEeCCCCCCCCceEEEccCCCE
Q 001367 567 IKRT--------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTL 636 (1091)
Q Consensus 567 ~~~~--------~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1091)
.... +..+......+.++.....|.++++.+.|+.|++||+.+-.. +..+.++-....-..-..+||+.+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 4322 222211124567777777889999999999999999986432 233322211111223457899999
Q ss_pred EEEEECCCeEEEEECCCC-CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 637 LAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+++|+.|...++|.+.+. .....+.+|...|++++|.| ++... +++++.|..+++|++.
T Consensus 332 l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p-------------------S~~t~-v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP-------------------SATTP-VATCSDDFRVKIWRLS 391 (720)
T ss_pred EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc-------------------ccCCC-ceeeccCcceEEEecc
Confidence 999999999999999876 44556789999999999975 44444 5666999999999974
No 150
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.9e-21 Score=208.03 Aligned_cols=239 Identities=11% Similarity=0.205 Sum_probs=213.3
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+....|+..|.|+..-..++ .+++|+.|..+-+|.+.....+.. +.+|+.+|.++.|+++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS 81 (825)
T ss_pred hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence 44567888999999866666 789999999999999876655543 7899999999999999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
..+|++|+.+|+|++||++.++.++ ++.+|...+..+.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence 9999999999999999999987776 7889999999999999999 7899999999999999989999999999999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1091)
|..+.| +++|.++++++.|..+++||...++....+..|...+.++.|+|..-.++.|+. +..+++||+++-+.
T Consensus 157 v~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 157 VDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV 230 (825)
T ss_pred eEEEee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence 999999 568899999999999999999999999999999999999999999888888876 77799999998888
Q ss_pred eEEEecccccccceEEEEEcCCCCEEEEEeCCC
Q 001367 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1091)
Q Consensus 568 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg 600 (1091)
+....... ..|.+.+|+|++..+++|....
T Consensus 231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence 87776665 7899999999999888876543
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=2.1e-19 Score=174.97 Aligned_cols=295 Identities=15% Similarity=0.252 Sum_probs=213.4
Q ss_pred eecccCCCCcEEEEEcC----CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 328 QTLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fsp----dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
+....|+.+|..++|.+ +...++|+.+. ..+.|++....--+. .++.-.-..|......++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCS 96 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcccee--------------eeeeccCCCCCcceEEEE
Confidence 44568888999999984 33335566554 678899876543221 111211335788888999
Q ss_pred ECCC----CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 404 WSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 404 ~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
|+-| .-+||+|+.-|.|+|.|+.+++..+ .+.+|...|+.+.|.|+..+ ++++++.|.+|++|++++..++.
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~ 172 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVA 172 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEE
Confidence 9875 3489999999999999999987766 57899999999999999877 89999999999999999999998
Q ss_pred Ee---cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee----------------------------ecCC
Q 001367 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----------------------------YDAP 528 (1091)
Q Consensus 480 ~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------~~~~ 528 (1091)
.| .+|...|.++.|+. +|.++++++.|..+++|++...+-... ...|
T Consensus 173 VfGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 173 VFGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred EecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 87 57999999999954 667999999999999999973221110 0112
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec-CCcee-------------eEEEecccccccceEEE--EEcCCCCE
Q 001367 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAI-------------KRTYQGLQLQHNSVSVV--HFDTAKDQ 592 (1091)
Q Consensus 529 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~-~~~~~-------------~~~~~~~~~~~~~v~~v--~~~~~~~~ 592 (1091)
...|.|+.|- |+++++-+. ++.|..|.. +-++. +..+.-. ...|.-+ +|.|-++.
T Consensus 251 rnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~---~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 251 RNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP---MCDIWFIRFAFDPWQKM 321 (385)
T ss_pred cchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccC---ccceEEEEEeecHHHHH
Confidence 2223333332 355665443 557999976 21111 1222222 2445544 44566889
Q ss_pred EEEEeCCCeEEEEECCCCee--EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 593 ILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
|+.|...|.|++||++...+ ..++..+.....|...+|+.|+..|+...+|++|.-||..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999987665 2334444444578999999999999999999999999853
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=1.5e-19 Score=190.87 Aligned_cols=289 Identities=16% Similarity=0.133 Sum_probs=198.9
Q ss_pred CeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeE
Q 001367 746 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI 824 (1091)
Q Consensus 746 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i 824 (1091)
..|+.+.++|.|.++|...... .++... +.. ...|...|..+.+.|....|++++ |.++
T Consensus 65 HiLavadE~G~i~l~dt~~~~f---------------r~ee~~-lk~----~~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVF---------------RLEERQ-LKK----PLAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ceEEEecCCCceeeecchhhhc---------------chhhhh-hcc----cccccceeEeeccCCCceeEEEccCCcee
Confidence 3466677789999998654322 111110 111 124999999999999666777776 7899
Q ss_pred EEEEccCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc--------------------------
Q 001367 825 SLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-------------------------- 876 (1091)
Q Consensus 825 ~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~-------------------------- 876 (1091)
++||+++.++... +.+|.+.+.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999998877 889999999999999888999999999999999985321
Q ss_pred -eeeeeccccCCeEE---EEECCCCCEEEEEeC-CCcEEEEEcCCCceeee-eee--eccCCCcCCCCCceEEEEcCCCC
Q 001367 877 -VISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTC-RSL--QTPDGVMTLAPSETHIQFHKDQT 948 (1091)
Q Consensus 877 -~~~~l~~h~~~V~~---l~~spdg~~las~s~-Dg~i~vwd~~~~~~~~~-~~~--~~~~~~~~~~~~i~~l~fs~dg~ 948 (1091)
.+.....|...|.+ +.+..|...|||+|+ |+.|+|||+........ ... .....+..-.-.+.++.....|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 01222345555666 666678899999988 99999999987543211 111 11111111123567777778888
Q ss_pred EEEE-EecCeEEEEEcCCcceee-eeecCCcc--CEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCC
Q 001367 949 RFLL-VHETHLAIYEAEELTCLK-QWFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1024 (1091)
Q Consensus 949 ~la~-~~d~~i~vwd~~~~~~~~-~~~~~h~~--~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 1024 (1091)
+|.+ +.|+.|+.|++.+...-. ..+.++.. .-..-..|||+.+|++|+.|..+++|.+.+-+.--. ..+.
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~----~l~G-- 358 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA----LLLG-- 358 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh----hhhC--
Confidence 8877 899999999988643221 11222211 111234689999999999999999999987654311 1222
Q ss_pred CcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1025 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1025 ~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
|.-+|. +++|.|.+-.-++++++|..+.+|++....
T Consensus 359 -ht~eVt--~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 359 -HTREVT--TVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred -cceEEE--EEeeccccCCCceeeccCcceEEEeccCch
Confidence 233444 556666545668888999999999996644
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=3.6e-19 Score=178.47 Aligned_cols=308 Identities=15% Similarity=0.158 Sum_probs=217.2
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
.++.|+ +|..+.|.+++...+|||+.|..|+||.+..+..-..- ....-...+..|...|+++.|+|+|
T Consensus 9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 9 SWHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred EecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCc
Confidence 344565 99999999988656899999999999999765433210 0001123488899999999999999
Q ss_pred CEEEEEECCCEEEEEEee--------C-----CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 409 SLLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
..||+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|..+++||+..|
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence 999999999999999877 3 222333446789999999999999999 8999999999999999999
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec----------C---------CC----CcE
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD----------A---------PG----LGC 532 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------~---------~~----~~i 532 (1091)
..+..+..|..-|..++|.| -++++++-+.|...+.+.+.......... . |. .-.
T Consensus 156 ~l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eeEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 99999999999999999965 44788888888866666554332222110 0 00 123
Q ss_pred EEEEEcCCCCEEEEEecCCC-----CceEEEEEecCC-ceeeEEEecccccccceEEEEEcC------------------
Q 001367 533 TRMAYSANGRRLFSCGTSKE-----GESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDT------------------ 588 (1091)
Q Consensus 533 ~~~~~s~d~~~l~~~~~~~~-----~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~------------------ 588 (1091)
..++|+|||..+++....-+ ..+..++++-.. .++...+.+.. .....+.|+|
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccc
Confidence 56789999999987543111 023344554321 12222233222 3334444433
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCe
Q 001367 589 AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1091)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1091)
.+-.++.++ ...|++||.++-.++.....- +...++.++|++||..+++.+.||-..+..++..+.
T Consensus 311 yrlvfaiAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 311 YRLVFAIAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cceEEEEee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 222333444 457999999998887766432 234789999999999999999999988877765533
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.7e-19 Score=169.16 Aligned_cols=268 Identities=13% Similarity=0.197 Sum_probs=193.9
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC--CC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 408 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg 408 (1091)
.+|.+-|.++.|.+-|+++ |+|+.|++|+|||.....-.-. ...-.+.|.+.|..+.|.+ -|
T Consensus 10 s~h~DlihdVs~D~~GRRm-AtCSsDq~vkI~d~~~~s~~W~---------------~Ts~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRM-ATCSSDQTVKIWDSTSDSGTWS---------------CTSSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCcee-eeccCCCcEEEEeccCCCCceE---------------EeeeEEecCCcEEEEEecCcccc
Confidence 5899999999999999965 9999999999999754432211 0111567999999999986 59
Q ss_pred CEEEEEECCCEEEEEEeeCC------cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee----
Q 001367 409 SLLGVAYSKHIVQLYAYHGG------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---- 478 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~------~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---- 478 (1091)
+.+|+++.|+++.||.-... ..-....++......|+++.|.|.-..+.+++++.||.+|||+....-.+
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 99999999999999986321 12223345667778999999999877779999999999999986543322
Q ss_pred --EEec-------CCCcceEEEeecccCCc-eEEEEEecC-----CeEEEEecCCCCce----eeecCCCCcEEEEEEcC
Q 001367 479 --YSFE-------GHGAPVYSLCPHAKENI-HFIFSISVD-----GKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSA 539 (1091)
Q Consensus 479 --~~~~-------~~~~~v~~~~~~~~~~~-~~l~s~~~d-----g~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~ 539 (1091)
+.+. .+..+..|+.|+++.-. .+|+.|+.+ +.++||........ .++..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 2332 35566778888754332 456666655 47899987765532 25678889999999999
Q ss_pred CC----CEEEEEecCCCCceEEEEEecCCce-----------------eeEEEecccccccceEEEEEcCCCCEEEEEeC
Q 001367 540 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1091)
Q Consensus 540 d~----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~ 598 (1091)
+- ..|++++. +| |+||.+.... .+..+..+..|++.|..+.|+-.|..|.+.|.
T Consensus 234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 53 34566654 44 9999887311 12333333344599999999999999999999
Q ss_pred CCeEEEEECCC---CeeEEEEeCC
Q 001367 599 DHVIKIWDMNK---VQLLTTIDAG 619 (1091)
Q Consensus 599 dg~i~iwd~~~---~~~~~~~~~~ 619 (1091)
||.|++|...- .++...+...
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred CceeeehhhhhhhhheeeeEEecc
Confidence 99999997542 3444444443
No 155
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=7.1e-19 Score=169.75 Aligned_cols=257 Identities=12% Similarity=0.177 Sum_probs=189.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCC-cccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~ 468 (1091)
-.+|..-|.++.|.+-|+++|+|+.|++|+|||.+.+ .........+.|.+.|..+.|.+. |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 4579999999999999999999999999999996443 234445567899999999999764 56 899999999999
Q ss_pred EEeCCC------C---ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee------eec-------
Q 001367 469 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD------- 526 (1091)
Q Consensus 469 iwd~~~------~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~------- 526 (1091)
||.-.. + ....++......|+.++|.|..-|-.+++++.||.+|||+.-...... ++.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 1 123456667789999999999999999999999999999765432221 111
Q ss_pred CCCCcEEEEEEcCC---CCEEEEEecCC-CCceEEEEEecCCc--e--eeEEEecccccccceEEEEEcCCC----CEEE
Q 001367 527 APGLGCTRMAYSAN---GRRLFSCGTSK-EGESFLVEWNESEG--A--IKRTYQGLQLQHNSVSVVHFDTAK----DQIL 594 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d---~~~l~~~~~~~-~~~~~i~iwd~~~~--~--~~~~~~~~~~~~~~v~~v~~~~~~----~~l~ 594 (1091)
.+..+..|+.|+|. ..+|++++.+. ...+.++||....+ + .+..+.++. .+|+.++|.|+- ..++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence 23446788999874 35677766431 12234666654432 2 334455555 999999999973 4678
Q ss_pred EEeCCCeEEEEECCCCe-----------------eEEEEe-CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 595 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 595 ~~s~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
+++.|| |+||++.... .+..+. ..++...|..+.|+-.|..|++.+.||.|++|...-.
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 899999 9999987311 112221 3344558999999999999999999999999986643
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2e-20 Score=211.87 Aligned_cols=296 Identities=16% Similarity=0.253 Sum_probs=226.4
Q ss_pred cEEEEEcCCCceEEEEEcC----------CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 337 PMSMDFHPVQHTLLLVGTN----------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 337 V~~v~fspdg~~llasg~~----------dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
--.++|||++..++|+|.. +.++.||.+.-...... ++...-..-......++|.+
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~d--------------lk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSD--------------LKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccc--------------ccccccccccccceeeeecc
Confidence 3457999999867787753 23344554422111100 00000111346788999999
Q ss_pred CCCE----EEEEECCCEEEEEEeeC---CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 407 DGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 407 dg~~----las~~~d~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.+.. +|++|+.||.|.|||+..-+.-.
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 7766 88889999999999876 4444445567789999999999998776 89999999999999998765544
Q ss_pred Eec--CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCC--cEEEEEEcCCCCE-EEEEecCCCCc
Q 001367 480 SFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRR-LFSCGTSKEGE 554 (1091)
Q Consensus 480 ~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~d~~~-l~~~~~~~~~~ 554 (1091)
++. .....|.+++|+. ...+.|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++.. +++++ +.+..
T Consensus 154 ~~~~~~~~~eI~~lsWNr-kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As-~dd~~ 231 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNR-KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS-GDDSA 231 (1049)
T ss_pred CCCCCCCcccceEeccch-hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeec-CCCCC
Confidence 442 2456799999863 3457899999999999999999988877766554 4778999998754 44444 44668
Q ss_pred eEEEEEecCC-ceeeEEEecccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 555 SFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 555 ~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
..|.+||++. ...++.+++|. ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .+..+.|+|
T Consensus 232 PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~p 306 (1049)
T KOG0307|consen 232 PVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCP 306 (1049)
T ss_pred ceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecC
Confidence 8999999875 45677788888 899999999987 7788899999999999999999999987543 789999999
Q ss_pred CCC-EEEEEECCCeEEEEECCCC
Q 001367 633 NGT-LLAVIANENRIKILETPES 654 (1091)
Q Consensus 633 ~~~-~l~~~~~dg~i~iwd~~~~ 654 (1091)
... .+++++-||.|.||.+.+.
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCcchhhhheeccceeeeeeecC
Confidence 655 8899999999999998865
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=2.6e-19 Score=174.21 Aligned_cols=300 Identities=15% Similarity=0.201 Sum_probs=205.8
Q ss_pred cccccEEEEEEec----CCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeE
Q 001367 731 VKANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 806 (1091)
Q Consensus 731 ~~~~~i~~~~~s~----dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 806 (1091)
.|..+|..++|.+ +...+++......+.+|+.+... +.++.+.... ..+......
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D-~d~~Esfyt 94 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYAD-EDHDESFYT 94 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccC-CCCCcceEE
Confidence 3667788888873 33345666666688888765421 1112221111 135566666
Q ss_pred EEecCC----CCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee
Q 001367 807 FALSKN----DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 881 (1091)
Q Consensus 807 l~~s~d----g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l 881 (1091)
++++-| .-++|.++ -|.|+|.|+.++++...+.+|...|..+.|.|+..+++++++.|.+|++|++++..++..+
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 666653 23566665 5999999999999999999999999999999988899999999999999999999998876
Q ss_pred ---ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee-------------eeeeccCCCcC-------CCCCc
Q 001367 882 ---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC-------------RSLQTPDGVMT-------LAPSE 938 (1091)
Q Consensus 882 ---~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~-------------~~~~~~~~~~~-------~~~~i 938 (1091)
.||.+.|.++.|+++|.+++|+|.|.+|++|++...+.... +.+.....|.+ +...|
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 56999999999999999999999999999999985332110 01111111111 00122
Q ss_pred eEEEEcCCCCEEEE-EecCeEEEEEc-CCcceeeee------------ecCCccCEEEEEEe--eCCCEEEEEEcCCcEE
Q 001367 939 THIQFHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFS--CDCRMVFTSFVDGTLS 1002 (1091)
Q Consensus 939 ~~l~fs~dg~~la~-~~d~~i~vwd~-~~~~~~~~~------------~~~h~~~v~~v~fs--~dg~~l~t~~~dg~v~ 1002 (1091)
.|+.|- |.++++ +.++.|..|.. +-++.+... +.-....|+-+.|+ |-+++||.|...|.|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~ 332 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVY 332 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEE
Confidence 222221 567777 78889999987 222221111 11124556666665 4578999999999999
Q ss_pred EEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecC
Q 001367 1003 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1003 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
+||+...+.... ..+....++..|+ -.+|+. |+.+|+..++|++|.-||..
T Consensus 333 vwdL~~~ep~~~----ttl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 333 VWDLDNNEPPKC----TTLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEECCCCCCccC----ceEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999998776411 1112222244455 456776 58999999999999999863
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.6e-19 Score=183.02 Aligned_cols=252 Identities=15% Similarity=0.177 Sum_probs=192.4
Q ss_pred EEEEEECC-------CCCEEEEEECCCEEEEEEeeCCcccceeEE------------------EeccccCeeEEEEcCCC
Q 001367 399 VNRVVWSP-------DGSLLGVAYSKHIVQLYAYHGGSDARQQLE------------------IDAHVGNVNDLAFSAPC 453 (1091)
Q Consensus 399 V~~l~~sp-------dg~~las~~~d~~i~iwd~~~~~~~~~~~~------------------~~~h~~~v~~~~~s~d~ 453 (1091)
..|++|.. -|+|+|.|+.|..|.|||+.--..+.+... -.+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 34666643 368999999999999999864322222111 23799999999999887
Q ss_pred CceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEE
Q 001367 454 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCT 533 (1091)
Q Consensus 454 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 533 (1091)
+. +|++||.|.+|++||+.+|++..++..|...|.++.|++. ...+|++|+.|++|.+.|.+........-...+.|-
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 76 8999999999999999999999999999999999999976 457999999999999999985333322222345788
Q ss_pred EEEEcCCCCEEEEEecCCCCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe
Q 001367 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 534 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 611 (1091)
.++|.|.....+.++. .+|+++-+|++.. +++.+++.|. ..|.++++++... .+++++.|+.|.+|++..-.
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 8999998877766664 3788999999875 8889999888 8999999988754 56669999999999987544
Q ss_pred eEEEEeCCCCCCCCceEEEccCC-CEEEEEECCCeEEEEECCCCCeec
Q 001367 612 LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1091)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1091)
...............|.++.|+- -.++.|+..+.+++||+.+...+.
T Consensus 408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 42222211112234566777754 467788888889999998775544
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=4.8e-19 Score=181.09 Aligned_cols=294 Identities=13% Similarity=0.173 Sum_probs=219.3
Q ss_pred EEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCE-EEEEECCCEEEEEEeeCC
Q 001367 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL-LGVAYSKHIVQLYAYHGG 428 (1091)
Q Consensus 350 lasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~-las~~~d~~i~iwd~~~~ 428 (1091)
+|+++ ..++|||+..-+...... -....-.+.++.|+....+ +|+.+.|..+++|.-...
T Consensus 7 ~aS~g--d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~ 67 (673)
T KOG4378|consen 7 VASTG--DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK 67 (673)
T ss_pred eeccC--CceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCC
Confidence 44444 679999997655443200 0011234889999987642 233456778899975543
Q ss_pred cc-cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEec
Q 001367 429 SD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507 (1091)
Q Consensus 429 ~~-~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 507 (1091)
.. +.......+. .-.|++...... ++++||..+.|+|||+....+.+.+++|...|+++.+. ....+|++++.
T Consensus 68 ~~~Vp~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN--~~DeyiAsvs~ 141 (673)
T KOG4378|consen 68 TPEVPRVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN--NTDEYIASVSD 141 (673)
T ss_pred CCccceeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec--CCcceeEEecc
Confidence 11 1111122222 223333333334 89999999999999999888888899999999999985 45579999999
Q ss_pred CCeEEEEecCCCCceeeecCC-CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEE
Q 001367 508 DGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF 586 (1091)
Q Consensus 508 dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~ 586 (1091)
.|.|.+..+.++.....+... +..+.-+.|+|..+++++...+ +|.|.+||+....++..+.. .|..+...++|
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicf 216 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGICF 216 (673)
T ss_pred CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCccee
Confidence 999999999888877777766 4456689999998887766542 78899999998877665543 23588899999
Q ss_pred cCCCC-EEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC-Ceeccccccc
Q 001367 587 DTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLS 664 (1091)
Q Consensus 587 ~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~ 664 (1091)
+|... .+++.+.|..|.+||....+....+.... +...++|+++|.+|+.|...|.|..||+... .++..+..|.
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred cCCccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc
Confidence 99765 45668999999999999877776665433 4689999999999999999999999999865 6778888999
Q ss_pred ccceeeeecccc
Q 001367 665 DNLRKLSVNPIS 676 (1091)
Q Consensus 665 ~~v~~~~~~~~~ 676 (1091)
..|++++|-+.+
T Consensus 294 ~sVt~vafq~s~ 305 (673)
T KOG4378|consen 294 ASVTRVAFQPSP 305 (673)
T ss_pred cceeEEEeeecc
Confidence 999999998765
No 160
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.83 E-value=1.2e-18 Score=169.26 Aligned_cols=407 Identities=10% Similarity=0.103 Sum_probs=258.6
Q ss_pred EEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
-++|||+|+|+|+++.- .+.|-|..+-+..+.. .--..|..+.|..|... .+.....|+.|.+|++...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999766 6888888775543311 22456888999998874 556677899999999999988888
Q ss_pred ecCCCcceEEEeecccCCc-eEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 481 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
+.....++.+++|+| || ..|.+...+-.|.+|.+.+.+.... ......+..++|+|||++.+.++.. |-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 888889999999965 55 5677788899999999988665443 3334456889999999999988642 22233444
Q ss_pred EecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEE
Q 001367 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637 (1091)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 637 (1091)
..-..-..++.+.... .....+.|+|||+.+++-. -+-.|+.|.. . -.+..++|+|.+++|
T Consensus 163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laVwd~~Leykv~aYe~-----------~---lG~k~v~wsP~~qfl 225 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAVWDNVLEYKVYAYER-----------G---LGLKFVEWSPCNQFL 225 (447)
T ss_pred HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEEecchhhheeeeeee-----------c---cceeEEEeccccceE
Confidence 3333444555555544 5677899999998877632 2223332221 1 146889999999999
Q ss_pred EEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccccccccc
Q 001367 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFA 717 (1091)
Q Consensus 638 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~ 717 (1091)
++|+.|+.+++.+--+-+.+..+- |-..+ .|-+..+-..++.
T Consensus 226 avGsyD~~lrvlnh~tWk~f~efl-hl~s~-------------------------------------~dp~~~~~~ke~~ 267 (447)
T KOG4497|consen 226 AVGSYDQMLRVLNHFTWKPFGEFL-HLCSY-------------------------------------HDPTLHLLEKETF 267 (447)
T ss_pred Eeeccchhhhhhceeeeeehhhhc-cchhc-------------------------------------cCchhhhhhhhhc
Confidence 999999999987654333332211 00000 0001000000000
Q ss_pred CCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCC
Q 001367 718 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 797 (1091)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1091)
.. -.-...++.|.|..- ...+|.......+.... ...+....+.+. .
T Consensus 268 ~~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~~---pv~~~~lkp~tD-------~-- 314 (447)
T KOG4497|consen 268 SI------------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQMT---PVKVHKLKPPTD-------F-- 314 (447)
T ss_pred ch------------hhhcccccccCCCcc---------ccCccccchhhhhhhhc---ceeeecccCCCC-------C--
Confidence 00 000112233333211 00111110000000000 000000011111 1
Q ss_pred CCCCCCeeEEEecCCCCEEEEEeC---CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC
Q 001367 798 SNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 798 ~~~~~~v~~l~~s~dg~~la~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~ 874 (1091)
.+....+.-++||+|..++++-.| +.+.+||++..+....+. ...+|.+..|.| +...|+.+.....+++|....
T Consensus 315 pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 315 PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCC
Confidence 124556788999999999999885 679999998776654443 567899999999 777888888788899998876
Q ss_pred cceeeeeccccCCeEEEEECCCCCEEEEEeCCCc
Q 001367 875 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 908 (1091)
Q Consensus 875 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~ 908 (1091)
..++..- +..-.|..+.|.-+|..++-.+.|..
T Consensus 393 ~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 393 PRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 5554433 33367999999999999999998874
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1e-16 Score=186.48 Aligned_cols=369 Identities=23% Similarity=0.358 Sum_probs=274.1
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCC-ceeeeceeEEeccccccceeeeeecCCC-ccEEEEEE-C
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S 405 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s 405 (1091)
.+..|...+.++.|.+.+. .++.++.|+.+.+|+...+. .+.. +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 5678999999999999998 56888889999999998886 3322 33322 47777777 8
Q ss_pred CCCC-EEEEEEC-CCEEEEEEeeC-CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC-CCcEEEEeCCCCceeEEe
Q 001367 406 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF 481 (1091)
Q Consensus 406 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~ 481 (1091)
+++. +++..+. |+.+.+|+... .. ....+..|...|..++|+|+++ .+++++. |+.+++|++.++..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGK---LIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCe---EEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999987 33 2336778999999999999999 6777775 999999999999999999
Q ss_pred cCCCcceEEEeecccCCce-EEEEEecCCeEEEEecCCCCcee-eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
.+|...|.++++. +++. .+++++.|+.|++||........ .+..+.... ...|++++..+++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 9999999999997 4554 55666999999999888666555 466666654 3389999988886654 667999
Q ss_pred EecCCcee-eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe--CCCCCCCCceEEEccCCCE
Q 001367 560 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--AGGGLPENPRICFNKNGTL 636 (1091)
Q Consensus 560 wd~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~ 636 (1091)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+........ .+.. .+..+.+.+++..
T Consensus 268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 342 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSL 342 (466)
T ss_pred eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCE
Confidence 99987664 44444443 789999999988899888888899999998887776665 3333 5788888434355
Q ss_pred EEEE-ECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccc-cccccccccccc
Q 001367 637 LAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEIS-VEAENKSEVEKP 714 (1091)
Q Consensus 637 l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s-~~~d~~i~~w~~ 714 (1091)
++.+ ..|+.+.+|+............... +..+.+. ++ ..... +..++.+.+|+.
T Consensus 343 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------------------~~-~~~~~~~~~~~~~~~~~~ 399 (466)
T COG2319 343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS---------------------PD-GRVVSSGSTDGTVRLWDL 399 (466)
T ss_pred EEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC---------------------CC-CCEEEEecCCCceEEEec
Confidence 6665 6788999999988762222222211 5555553 32 23333 577889999997
Q ss_pred cccCCcccceeecCCcccc-ccEEEEEEecCCCeEEEeecCceEEEeecCC
Q 001367 715 LFARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR 764 (1091)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~ 764 (1091)
.......... .. ..+....+++++..++.++.++.+++|+...
T Consensus 400 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 400 STGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ccCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 6332211111 11 6888999999999999988899999998643
No 162
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=3.5e-16 Score=181.86 Aligned_cols=372 Identities=23% Similarity=0.397 Sum_probs=283.6
Q ss_pred EeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc-eeEEecCCCc-ceEEEeecccCCce-EEEEEec-CCeEE
Q 001367 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKIK 512 (1091)
Q Consensus 437 ~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i~ 512 (1091)
+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 557899999999999999 78888899999999988887 6777766443 77777775 55555 5555444 99999
Q ss_pred EEecCC-CCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCC
Q 001367 513 AWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1091)
Q Consensus 513 iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 591 (1091)
+|+... ......+..+...+..++|+|+++.+++++. .++.+.+|+...+..+..+.+|. ..+.+++|+|++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~ 211 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDGG 211 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCcc
Confidence 999998 7777788889999999999999997777743 36779999999988888888866 8999999999998
Q ss_pred -EEEEEeCCCeEEEEECCCCeeEE-EEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCe-ecccccccccce
Q 001367 592 -QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNLR 668 (1091)
Q Consensus 592 -~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~ 668 (1091)
.+++++.|+.|++||...+..+. .+..+.. .. ...|++++.++++++.|+.+++|+...... ....
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------- 280 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-------- 280 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------
Confidence 44445899999999988777777 4655544 22 228999998899999999999999875533 1000
Q ss_pred eeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeE
Q 001367 669 KLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 748 (1091)
Q Consensus 669 ~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 748 (1091)
..|...+.++.|.|++..+
T Consensus 281 -------------------------------------------------------------~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 281 -------------------------------------------------------------SGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred -------------------------------------------------------------ecCCccEEEEEECCCCCEE
Confidence 1145677788888888888
Q ss_pred EEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEE--eCCeEEE
Q 001367 749 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVISL 826 (1091)
Q Consensus 749 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~dg~i~i 826 (1091)
++++.++.+.+|+...... ..... ...|...+..+.+.+++..++.+ .++.+.+
T Consensus 300 ~~~~~d~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 355 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKL----------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355 (466)
T ss_pred EEeeCCCcEEEEEcCCCce----------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEEe
Confidence 8877788888887543321 11111 11355578888884343566655 3688999
Q ss_pred EEccCceeEEEecCCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeC
Q 001367 827 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 905 (1091)
Q Consensus 827 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~-g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~ 905 (1091)
|+............. ..+..+.+++ + ..+.. +..++.+.+|+............+...+....+++++..+++++.
T Consensus 356 ~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (466)
T COG2319 356 WDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432 (466)
T ss_pred eecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecC
Confidence 999887733333322 2288999998 7 55554 789999999999988877766655477999999999999999999
Q ss_pred CCcEEEEEcCC
Q 001367 906 DAQIFVWDVDG 916 (1091)
Q Consensus 906 Dg~i~vwd~~~ 916 (1091)
++.+++|+...
T Consensus 433 ~~~~~~~~~~~ 443 (466)
T COG2319 433 DNTIRLWDLKT 443 (466)
T ss_pred CCcEEEEeccC
Confidence 99999999987
No 163
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=7.9e-19 Score=178.54 Aligned_cols=306 Identities=13% Similarity=0.114 Sum_probs=222.1
Q ss_pred CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccc
Q 001367 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 734 (1091)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 734 (1091)
......+.+...|++++|+| ..+.+.+++|+..|.|-+||+.+..+..-..+.+.. |..
T Consensus 177 ~~~~v~kv~~~Rit~l~fHP-------------------t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~--hs~ 235 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHP-------------------TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP--HSG 235 (498)
T ss_pred eecceeEecccceEEEEecc-------------------cCcceEEEEccCCCcEEEEecCCCCCccCceEEecc--CCc
Confidence 34445566778899999987 455678899999999999999644444444444433 899
Q ss_pred cEEEEEEecCC-CeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCC
Q 001367 735 KISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 813 (1091)
Q Consensus 735 ~i~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 813 (1091)
+|.++.|+|.. ..+++.+.||++++-|+...... .++... .....+..+.|+.+.
T Consensus 236 ~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-----------~v~s~~-------------~d~~~fs~~d~~~e~ 291 (498)
T KOG4328|consen 236 PVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-----------EVLSLD-------------TDNIWFSSLDFSAES 291 (498)
T ss_pred cccceEecCCChhheeeeccCceeeeeeecchhhH-----------HHhhcC-------------ccceeeeeccccCCC
Confidence 99999999975 46888999999999887654321 011111 134556778888888
Q ss_pred CEEEEEeC-CeEEEEEccCcee-EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce----eeeeccccCC
Q 001367 814 AYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHSKR 887 (1091)
Q Consensus 814 ~~la~~~d-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~----~~~l~~h~~~ 887 (1091)
..++.+.+ |...+||+.+.+. ...+.-|...|+.+++.|-...+||+++.|++++|||++.-.. +.....|...
T Consensus 292 ~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs 371 (498)
T KOG4328|consen 292 RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS 371 (498)
T ss_pred ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccce
Confidence 88888875 8999999987654 5666778889999999998888999999999999999986321 2333459999
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcC---CC-ceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEE
Q 001367 888 VTGLVFSDALNILVSSGGDAQIFVWDVD---GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYE 962 (1091)
Q Consensus 888 V~~l~~spdg~~las~s~Dg~i~vwd~~---~~-~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd 962 (1091)
|.+..|||++..|+|.+.|..|+|||.+ .. +...........+..- ......|.||..+++++ .-..|-|+|
T Consensus 372 V~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl---T~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 372 VNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL---TPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccc---cchhheeCCCccEEEEeccCcceeEEc
Confidence 9999999998889999999999999985 21 1111111111111111 35577999999999996 567799999
Q ss_pred cCCcceeeeeecCCccCEEE-EEEeeCCC-EEEEEEcCCcEEEEeCCC
Q 001367 963 AEELTCLKQWFPISSVPISQ-ATFSCDCR-MVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 963 ~~~~~~~~~~~~~h~~~v~~-v~fs~dg~-~l~t~~~dg~v~iwd~~~ 1008 (1091)
...++.+.++..+....|.+ ..|.|-+. +++-++..|.|+||.-..
T Consensus 449 ~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 449 GNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred CCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 99988887765544445555 47889777 455555567888886543
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=9e-19 Score=173.58 Aligned_cols=265 Identities=16% Similarity=0.203 Sum_probs=186.7
Q ss_pred eecccCCCCcEEEEEcCCC-ceEEEEEcCCCcEEEEEcCCCCce-eeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 328 QTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg-~~llasg~~dg~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
.....|.+.+..+.-++-| ..++|+=+..|.|.||++...-.. ......+-+ ....+...+.+|...=..++||
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~LdWS 220 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYGLDWS 220 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccceeeecc
Confidence 3445777788888888765 346777788899999997532111 000000000 0111222378899999999999
Q ss_pred C-CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC---ceeEEe
Q 001367 406 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF 481 (1091)
Q Consensus 406 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~ 481 (1091)
| ....|++|.--+.|++|...+|.-..-...+.+|+..|..++|||..+. +|++||-||+|+|||++.+ .++.+
T Consensus 221 p~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~- 298 (440)
T KOG0302|consen 221 PIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST- 298 (440)
T ss_pred cccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-
Confidence 9 3335778877788999999987654444457789999999999998776 8999999999999999988 33433
Q ss_pred cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC---CceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
+.|.+.|+.+.|+. +-.+|++|+.||+++|||++.. .....++.|..+|+++.|+|....++.++. .+.+|.
T Consensus 299 kAh~sDVNVISWnr--~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~Qit 373 (440)
T KOG0302|consen 299 KAHNSDVNVISWNR--REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQIT 373 (440)
T ss_pred eccCCceeeEEccC--CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEE
Confidence 78999999999954 3349999999999999999864 455688899999999999996654444432 277899
Q ss_pred EEecCCcee----------------eEEEecccccccceEEEEEcCCCC-EEEEEeCCCeEEEE
Q 001367 559 EWNESEGAI----------------KRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIW 605 (1091)
Q Consensus 559 iwd~~~~~~----------------~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iw 605 (1091)
+||+....- -+.+--|. ....+..+.|++.-. ++++.+.|| +.||
T Consensus 374 iWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 374 IWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 999863211 01111121 124677888988754 556666666 3444
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.2e-18 Score=176.26 Aligned_cols=294 Identities=16% Similarity=0.214 Sum_probs=215.0
Q ss_pred EEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE--ECCCeEEEEECCCCCeecccccccccceee
Q 001367 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKL 670 (1091)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 670 (1091)
+.+++...++++||.........+..+...+.+.++.|+.... |+++ +.|..+++|.-... ... |
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~--~~~-------V--- 71 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK--TPE-------V--- 71 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCC--CCc-------c---
Confidence 3444455579999998877776666666666789999988664 4443 45777888864322 000 0
Q ss_pred eeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEE
Q 001367 671 SVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 750 (1091)
Q Consensus 671 ~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 750 (1091)
-+-... ....-.+++......++++
T Consensus 72 ---------------------------------------p~~~k~----------------~gd~~~Cv~~~s~S~y~~s 96 (673)
T KOG4378|consen 72 ---------------------------------------PRVRKL----------------TGDNAFCVACASQSLYEIS 96 (673)
T ss_pred ---------------------------------------ceeecc----------------ccchHHHHhhhhcceeeec
Confidence 000000 0011122333334478999
Q ss_pred eecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeC-CeEEEEEc
Q 001367 751 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 829 (1091)
Q Consensus 751 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~ 829 (1091)
++..+.++|||+... +....+. +|...|+++.+.-...+||++++ |.|.|-.+
T Consensus 97 gG~~~~Vkiwdl~~k------------------------l~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAK------------------------LIHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred cCcCceeeehhhHHH------------------------HHhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 999999999997632 1111122 48899999999999999999995 88999999
Q ss_pred cCceeEEEecCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee-eccccCCeEEEEECCC-CCEEEEEeCC
Q 001367 830 MTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTGLVFSDA-LNILVSSGGD 906 (1091)
Q Consensus 830 ~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~-l~~h~~~V~~l~~spd-g~~las~s~D 906 (1091)
.++....+|....+ .++-+.|+|....+|.+++.+|.|.+||+....++.. ...|..+...++|+|. ..+|++.|.|
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence 99988888876544 5668999996667788899999999999998776644 4679999999999995 4678999999
Q ss_pred CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcceeeeeecCCccCEEEEEE
Q 001367 907 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATF 985 (1091)
Q Consensus 907 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~f 985 (1091)
..|.+||+....... ++. +..+...++|+++|.+|++| ..|.|..||++..+.....+..|...|++++|
T Consensus 231 kki~~yD~~s~~s~~--~l~-------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 231 KKINIYDIRSQASTD--RLT-------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred ceEEEeecccccccc--eee-------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 999999998643222 111 11358899999999999996 67899999999877766667789999999999
Q ss_pred eeCC
Q 001367 986 SCDC 989 (1091)
Q Consensus 986 s~dg 989 (1091)
-+.-
T Consensus 302 q~s~ 305 (673)
T KOG4378|consen 302 QPSP 305 (673)
T ss_pred eecc
Confidence 8764
No 166
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.9e-17 Score=173.86 Aligned_cols=598 Identities=11% Similarity=0.119 Sum_probs=357.5
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC-------
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG------- 408 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg------- 408 (1091)
.-.++.|+|.| |+|-|+. ..|.|-|..+-+.+.. +.-|...|+.+.|.|-.
T Consensus 17 N~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~llS 74 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLLS 74 (1062)
T ss_pred cccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhccC
Confidence 57789999999 5688875 6789999988887765 66699999999998731
Q ss_pred -----CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC---CCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 409 -----SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 409 -----~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
-+||++...|.|.+||...+.... .+..|..++..++|-+ +.+. +|+.-....+|.+|+..+|+....
T Consensus 75 ~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~Wk 150 (1062)
T KOG1912|consen 75 PSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFWK 150 (1062)
T ss_pred ccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceeec
Confidence 267788888999999999876544 5678889999999965 3434 566666678999999999999988
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCC------ceeee-cCCCC-----------------------
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDY-DAPGL----------------------- 530 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~-~~~~~----------------------- 530 (1091)
.........++.+.|-.. +.+..-+..|.+.+.+.-... ..+.+ ..+..
T Consensus 151 ~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~f 229 (1062)
T KOG1912|consen 151 YDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYF 229 (1062)
T ss_pred cccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhH
Confidence 876666777787776533 455555566666666542111 11111 11111
Q ss_pred --cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCC--CEEEEEeCCCeEEEEE
Q 001367 531 --GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWD 606 (1091)
Q Consensus 531 --~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~~l~~~s~dg~i~iwd 606 (1091)
-...++|+|.-+.++.... ...+.++|++-..++....-.. +.+.-+.+-|++ ..+++.-.||.+.+|-
T Consensus 230 ity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 230 ITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred HHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 0123567776554444433 2339999999888887776655 556666666664 5789999999999997
Q ss_pred CCCC----------------eeEEEEeCCCCCCCCceEEEccC-CCEEEEEECCCeEEEEECCCCCeecccc--------
Q 001367 607 MNKV----------------QLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAG-------- 661 (1091)
Q Consensus 607 ~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------- 661 (1091)
.+.. .....+..-... .....+..|. ...+++...+|...+|.+.+++......
T Consensus 303 rk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~ 381 (1062)
T KOG1912|consen 303 RKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVL 381 (1062)
T ss_pred eeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccc
Confidence 6542 112221111111 1122233343 4456666677888889888653221111
Q ss_pred -----------------------cccccceeeeeccccccccccccCCcccCCCCCCCC-------Cccccccccccccc
Q 001367 662 -----------------------VLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDV-------KPEISVEAENKSEV 711 (1091)
Q Consensus 662 -----------------------~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~-------~~l~s~~~d~~i~~ 711 (1091)
+|.....+....|.+.. ......|.+ .+++.|...|+|.+
T Consensus 382 pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~----------t~~~~~p~~n~~~~~~pLvAvGT~sGTV~v 451 (1062)
T KOG1912|consen 382 PFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPEL----------TKVENDPGGNTPAGTVPLVAVGTNSGTVDV 451 (1062)
T ss_pred cccccCceeehhhccccchhhcCCCCCCceeeecccCccc----------ceeecCCCCCccceeeeeEEeecCCceEEE
Confidence 11222222222222111 111112222 34678889999999
Q ss_pred ccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCcee
Q 001367 712 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 791 (1091)
Q Consensus 712 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1091)
+|+.++.-.... ..|...|.++.|..... +++.+.+... +....-.+.+.+-++.+|....
T Consensus 452 vdvst~~v~~~f------svht~~VkgleW~g~ss-lvSfsys~~n------------~~sg~vrN~l~vtdLrtGlsk~ 512 (1062)
T KOG1912|consen 452 VDVSTNAVAASF------SVHTSLVKGLEWLGNSS-LVSFSYSHVN------------SASGGVRNDLVVTDLRTGLSKR 512 (1062)
T ss_pred EEecchhhhhhh------cccccceeeeeecccee-EEEeeecccc------------ccccceeeeEEEEEcccccccc
Confidence 998754333222 23888999999987776 4443322000 0000011234555666666433
Q ss_pred eecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEc-CC---------------C
Q 001367 792 VNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------D 854 (1091)
Q Consensus 792 ~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------~ 854 (1091)
...+++ ..+.+|..+..|..|+|++... +.-+.+||+++..+++.....-..++.++|+ |. .
T Consensus 513 fR~l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms 591 (1062)
T KOG1912|consen 513 FRGLQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMS 591 (1062)
T ss_pred cccCCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhh
Confidence 332322 4678999999999999999998 6779999998887776665455568888888 31 1
Q ss_pred CcEEEEEeCCCeEEEEeccC-------ccee-eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 001367 855 NNVIAIGMDDSTILIYNARS-------SEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 926 (1091)
Q Consensus 855 ~~~la~g~~dg~i~iwd~~~-------~~~~-~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~ 926 (1091)
.+..+..+ +..+++.+.. +... ...+...-.+.+++| .+..|+.|..+|.+.+||+.......
T Consensus 592 ~n~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg----- 662 (1062)
T KOG1912|consen 592 ENLVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG----- 662 (1062)
T ss_pred hceeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC-----
Confidence 12233333 2233333221 1111 111111223444667 46689999999999999987632111
Q ss_pred ccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCcc--CEEEEEEeeCCCEEEEEEcCCcEEEE
Q 001367 927 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV--PISQATFSCDCRMVFTSFVDGTLSIH 1004 (1091)
Q Consensus 927 ~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~--~v~~v~fs~dg~~l~t~~~dg~v~iw 1004 (1091)
.. .............+-|....+++-...-+-+||.+....+..+ .|... .+..+.+......++ ..|.++|+-
T Consensus 663 ~~-d~p~~ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~ 738 (1062)
T KOG1912|consen 663 VR-DSPDPRAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFR 738 (1062)
T ss_pred cc-CCCCchhhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEE
Confidence 00 0111001223334445444555556667899999888887775 34333 334444444444333 345578877
Q ss_pred eCCCCce
Q 001367 1005 EASNLEV 1011 (1091)
Q Consensus 1005 d~~~~~~ 1011 (1091)
.+.....
T Consensus 739 ~m~mks~ 745 (1062)
T KOG1912|consen 739 VMPMKSP 745 (1062)
T ss_pred eccccCC
Confidence 6665443
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=1.6e-17 Score=166.77 Aligned_cols=303 Identities=13% Similarity=0.147 Sum_probs=216.4
Q ss_pred cccEEEEEEecCCC-eEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC
Q 001367 733 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 811 (1091)
Q Consensus 733 ~~~i~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 811 (1091)
..++.++.|.+++. .+++++.|..+++|.+......... ......-.+. .|...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence 45788899988877 8999999999999998765431111 0101111222 4999999999999
Q ss_pred CCCEEEEEeC-CeEEEEEcc--------C--------ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC
Q 001367 812 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 812 dg~~la~~~d-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~ 874 (1091)
+|..+|+|+| |.|.+|... + +...+.+.+|...|..++|+| ++.++++++.|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 9999999985 889999765 2 345566788999999999999 899999999999999999999
Q ss_pred cceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee---eeccCCCcC------------CCCCce
Q 001367 875 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMT------------LAPSET 939 (1091)
Q Consensus 875 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~---~~~~~~~~~------------~~~~i~ 939 (1091)
|+....+.+|...|..++|.|-++++++-+.|...+++.+.......... +....++.. ...-..
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999877777765433211110 111111100 002346
Q ss_pred EEEEcCCCCEEEEE-----ecC-----eEEEEEcCCcceeeeeecCCccCEEEEEEee------------------CCCE
Q 001367 940 HIQFHKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC------------------DCRM 991 (1091)
Q Consensus 940 ~l~fs~dg~~la~~-----~d~-----~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~------------------dg~~ 991 (1091)
.++|+|||.+|++. ..+ ..++|+-.........++.-..++..+.|+| -+-.
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 78999999999972 222 3456664433333222333355566666665 1223
Q ss_pred EEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCC
Q 001367 992 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1064 (1091)
Q Consensus 992 l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~ 1064 (1091)
+|.++ ...|+|||.++-..++...-..| .+++ .++|++ ||..|+..+.||.+-+-.+...+.
T Consensus 315 faiAt-~~svyvydtq~~~P~~~v~nihy-------~~iT--Diaws~-dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 315 FAIAT-KNSVYVYDTQTLEPLAVVDNIHY-------SAIT--DIAWSD-DGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEEee-cceEEEeccccccceEEEeeeee-------eeec--ceeecC-CCcEEEEeccCCceEEEEEcchhc
Confidence 44554 45899999999888876663333 3333 678998 699999999999988877766553
No 168
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=7.4e-17 Score=166.85 Aligned_cols=499 Identities=14% Similarity=0.110 Sum_probs=297.0
Q ss_pred CCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEE------cCCCCceEEEEeeCCCcE
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTI 467 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~------s~d~~~~~l~s~~~d~~i 467 (1091)
.|...|.|+.|+.+...+.+++.+..+.-||+.+.+ .... .+ ....|....+ ...+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 377788899999988887777655555555555432 2211 11 1111111111 011111267888889999
Q ss_pred EEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
.+.+ +.++.-.....|.+.+.+-.|+ +||.-|++++.||.|++|.- ++-.+.++.....+|.|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~--~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWS--PDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccC--CCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 8888888999999999999884 56778999999999999963 333444555667799999999999888877
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
.. +.+.+=.+.....+-..+.|. +-|.++.|++..+.+++|++|-..++||.. |..+..-..+.. +|++
T Consensus 164 ~g-----~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITS 232 (737)
T KOG1524|consen 164 QG-----GHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITS 232 (737)
T ss_pred cC-----CeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceee
Confidence 53 347777777666677788877 899999999999999999999999999975 444444444444 7999
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
++|+|+ +.+++++. +++++= +
T Consensus 233 va~npd-~~~~v~S~-nt~R~~--------------------------------------------~------------- 253 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSY-NTARFS--------------------------------------------S------------- 253 (737)
T ss_pred eeeccc-cceeeeee-eeeeec--------------------------------------------C-------------
Confidence 999999 66666654 233310 0
Q ss_pred ccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCC
Q 001367 708 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 787 (1091)
Q Consensus 708 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1091)
...+.|..++||+||..++.++..|.+.+--.-.
T Consensus 254 -----------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie----------------------- 287 (737)
T KOG1524|consen 254 -----------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIE----------------------- 287 (737)
T ss_pred -----------------------CCccceEEEEEcCCCceeeccccCceEEEeeeeh-----------------------
Confidence 1346788899999999999888888776521100
Q ss_pred CceeeecCCCCCCCCCeeEEEecCCCCEEEEE-eCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001367 788 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST 866 (1091)
Q Consensus 788 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~ 866 (1091)
..+ + -+.+=++. ....|.+-|+.++.+ ..+ .....+...+..- + +|+++. ...
T Consensus 288 -----q~l--------~-------~~n~~~t~~~r~~I~vrdV~~~v~-d~L-E~p~rv~k~sL~Y--~-hLvvaT-s~q 341 (737)
T KOG1524|consen 288 -----QQL--------V-------SGNLKATSKSRKSITVRDVATGVQ-DIL-EFPQRVVKFSLGY--G-HLVVAT-SLQ 341 (737)
T ss_pred -----hhh--------h-------hccceeEeeccceEEeehhhhhHH-HHh-hCccceeeeeece--e-EEEEEe-ccE
Confidence 000 0 00111111 234566666666544 222 2344565666543 3 333333 235
Q ss_pred EEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCC
Q 001367 867 ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 946 (1091)
Q Consensus 867 i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~d 946 (1091)
|++|.-........+.+....+.-+.-+. ..+++ .+..+|.++..+...... ..+.|... .....-..|-.
T Consensus 342 vyiys~knwntpiiidgre~tr~lieq~e-k~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtlsLa 412 (737)
T KOG1524|consen 342 VYIYSEKNWNTPIIIDGREDTRNLIEQGE-KYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLSLA 412 (737)
T ss_pred EEEEecCCccCcEEEeccccchhHhhhhh-hheEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeeecc
Confidence 77776554433334444333322111111 12222 233346666555422111 01111111 11222233333
Q ss_pred CCEEEE--Eec-CeEEEEEc-CCcceeeeee-cCCccCEEEEEEe----eCCCEEEEEEcCCcEEEEeCCCCceEEEeec
Q 001367 947 QTRFLL--VHE-THLAIYEA-EELTCLKQWF-PISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 947 g~~la~--~~d-~~i~vwd~-~~~~~~~~~~-~~h~~~v~~v~fs----~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 1017 (1091)
...|+. ..| .-+.++|. .+|+....-. ..|...|..++.. ++++.++.-...+.+.|=.+.+.....++..
T Consensus 413 ndtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~K 492 (737)
T KOG1524|consen 413 NDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYK 492 (737)
T ss_pred cceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhh
Confidence 445555 233 35788888 6666543211 2244555555554 3556777777777777766554322222221
Q ss_pred ccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1018 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1018 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
.... | ..++|+ |...+++|-.|+++.+|-.++..
T Consensus 493 iGTm--------V--htLawn--dttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 493 IGTM--------V--HTLAWN--DTTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hhhh--------h--hhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence 1111 1 235676 46779999999999999986643
No 169
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.9e-16 Score=169.58 Aligned_cols=487 Identities=12% Similarity=0.109 Sum_probs=292.7
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC----------CCceEEEEeeCCCc
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDKT 466 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d----------~~~~~l~s~~~d~~ 466 (1091)
..-.++.|+|.| ++|.|+.. .|.+-|..+-+.+. .+.-|...|+.+.|.|- ..+++++++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346788999877 67777654 58888887765554 67789999999999763 24567888999999
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCc--eEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcC-CCCE
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 543 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~ 543 (1091)
|.+||...+..+..+..|..++..++|.+..+. ..|++-....++.+|+..+++.............|+.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999999876554 4678888889999999999999988887777777888888 4455
Q ss_pred EEEEecCCCCceEEEEEecC-------CceeeEEEecccc-------------c---ccc------eEEEEEcCCCCEEE
Q 001367 544 LFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL-------------Q---HNS------VSVVHFDTAKDQIL 594 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~-------------~---~~~------v~~v~~~~~~~~l~ 594 (1091)
+...+. .|.+.+-+.- .++..+.-..|.. + ... ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 544433 3344444322 1222222212110 0 000 11246788877777
Q ss_pred EEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCC--CEEEEEECCCeEEEEECCCCCeeccc-----cc-cccc
Q 001367 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAA-----GV-LSDN 666 (1091)
Q Consensus 595 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~-~~~~ 666 (1091)
.......+.++|++-..++.....+.+ .+.-+.+-|++ ..|++.-.||.+.+|-.+.-....+. .. ....
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q 324 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQ 324 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccc
Confidence 777788999999999999988887765 34556666654 57899999999999987653211111 00 0111
Q ss_pred ceeeeeccccccccccccCCcccCCCCCCC-CCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecC-
Q 001367 667 LRKLSVNPISTVTGAGIANGSVSNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNG- 744 (1091)
Q Consensus 667 v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d- 744 (1091)
+.++..-..-.. +... .-|. ...++.--.+|.+.+|.+..+......... ...-+..+.|..+
T Consensus 325 ~~~vr~m~~~rp---------~~~~-~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-----~iel~~pf~f~~~~ 389 (1062)
T KOG1912|consen 325 VHVVRPMEEFRP---------VIGA-SCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-----SIELVLPFDFNLST 389 (1062)
T ss_pred eEEEeechhccc---------ceee-cCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc-----cccccccccccCce
Confidence 111111100000 0000 0122 333444445677788887632221111100 0000111111111
Q ss_pred ----CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe
Q 001367 745 ----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 820 (1091)
Q Consensus 745 ----g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~ 820 (1091)
...++..+.||. ...|..- .-.++........ .. .......+. -.++|.|.
T Consensus 390 ~~v~k~~l~~LS~dg~-----------h~sGs~~-----~~~~p~p~~t~~~-~~----p~~n~~~~~----~pLvAvGT 444 (1062)
T KOG1912|consen 390 KLVGKTSLISLSDDGS-----------HSSGSTC-----VRMRPMPELTKVE-ND----PGGNTPAGT----VPLVAVGT 444 (1062)
T ss_pred eehhhccccchhhcCC-----------CCCCcee-----eecccCcccceee-cC----CCCCcccee----eeeEEeec
Confidence 111222222220 0001000 0000000000000 00 000000111 12566666
Q ss_pred -CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEe----------CCCeEEEEeccCccee--eeec-cccC
Q 001367 821 -GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM----------DDSTILIYNARSSEVI--SKLE-GHSK 886 (1091)
Q Consensus 821 -dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~----------~dg~i~iwd~~~~~~~--~~l~-~h~~ 886 (1091)
.|+|.++|+.++...+.+..|...|.++.|.. ..+ |++.+ .-+.+.+-|+.+|... +.++ ....
T Consensus 445 ~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~des 522 (1062)
T KOG1912|consen 445 NSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDES 522 (1062)
T ss_pred CCceEEEEEecchhhhhhhcccccceeeeeecc-cee-EEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcC
Confidence 69999999999999999999999999999975 333 44332 2246788899998543 2233 2557
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEc
Q 001367 887 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 944 (1091)
Q Consensus 887 ~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs 944 (1091)
+|+.+..|.-|+||+..-.|.-+.+||+++.. +++...-..+ -++.+.|+
T Consensus 523 pI~~irvS~~~~yLai~Fr~~plEiwd~kt~~-----~lr~mS~a~P---~it~leWs 572 (1062)
T KOG1912|consen 523 PIRAIRVSSSGRYLAILFRREPLEIWDLKTLR-----MLRLMSLALP---LITVLEWS 572 (1062)
T ss_pred cceeeeecccCceEEEEecccchHHHhhccch-----HHHHHhhcCC---cEEEEeec
Confidence 99999999999999999999999999998733 3333222221 48888888
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1.9e-17 Score=160.88 Aligned_cols=286 Identities=14% Similarity=0.203 Sum_probs=205.3
Q ss_pred cEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEecccccccee--eeeecCCCccEEEEEEC-------CC
Q 001367 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFK--TALVRDPGVSVNRVVWS-------PD 407 (1091)
Q Consensus 337 V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~V~~l~~s-------pd 407 (1091)
...+.|||||.-+ .+-+.|..+.+|++...-.-..- .....++ ..+-......|...+|- |+
T Consensus 52 ~kgckWSPDGSci-L~~sedn~l~~~nlP~dlys~~~--------~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~ 122 (406)
T KOG2919|consen 52 LKGCKWSPDGSCI-LSLSEDNCLNCWNLPFDLYSKKA--------DGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS 122 (406)
T ss_pred hccceeCCCCceE-EeecccCeeeEEecChhhcccCC--------CCccccccceeEEeccCCEEEEEEeeeccccCCCc
Confidence 3457899999854 66788999999998431110000 0000000 00011123566677775 67
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEecccc---CeeEEEEcCCCCceEEEEeeCCCcEEEEeC-CCCcee--EEe
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF 481 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~---~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~-~~~~~~--~~~ 481 (1091)
..++|+.+.+.-|++||.-+|+...... --.|.. ...+++|+|||. .|+ ++....|+++|+ +.|+.- ...
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlf-aGykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLF-AGYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred cceeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEe-ecccceEEEeeccCCCCCCcchhh
Confidence 8899999999999999999997544221 223443 456899999999 565 455789999998 445322 111
Q ss_pred -----cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 482 -----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 482 -----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
.+..+.+.+++|+|. +...++.++...++-|+.-........+.+|.+.|+.++|.++|+.|++++. .+..
T Consensus 199 ~~~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dk 274 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDK 274 (406)
T ss_pred hhcccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCe
Confidence 233677888899876 4468999999999999998999999999999999999999999999999875 2556
Q ss_pred EEEEecCC-ceeeEEEecccccccceEE--EEEcCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCCCCCCceEEEcc
Q 001367 557 LVEWNESE-GAIKRTYQGLQLQHNSVSV--VHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 557 i~iwd~~~-~~~~~~~~~~~~~~~~v~~--v~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
|..||++. +.++..+..|.. ..-.. ....|++++|++|+.||.|++||+++ |.....+..+.. .++.++++|
T Consensus 275 Il~WDiR~~~~pv~~L~rhv~--~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP 350 (406)
T KOG2919|consen 275 ILCWDIRYSRDPVYALERHVG--DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNP 350 (406)
T ss_pred EEEEeehhccchhhhhhhhcc--CccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCc
Confidence 99999985 456666766662 12233 34568899999999999999999998 665666655543 689999999
Q ss_pred CCCEEEEEECC
Q 001367 633 NGTLLAVIANE 643 (1091)
Q Consensus 633 ~~~~l~~~~~d 643 (1091)
--.++++++..
T Consensus 351 ~mpilatssGq 361 (406)
T KOG2919|consen 351 IMPILATSSGQ 361 (406)
T ss_pred ccceeeeccCc
Confidence 98888887654
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=1.6e-17 Score=165.73 Aligned_cols=237 Identities=16% Similarity=0.271 Sum_probs=184.7
Q ss_pred eecCCCccEEEEEECC-CCCEEEEEECCCEEEEEEeeCCcc----cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC
Q 001367 391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1091)
.+.||+++|..++|+| +...||+||.|.+|.||.+..+.. ......+.||...|.-++|+|.... +|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4889999999999999 788999999999999999976543 2345578999999999999998877 789999999
Q ss_pred cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCC-cEEEEEEcCCCCEE
Q 001367 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL 544 (1091)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l 544 (1091)
+|.+||+.+|+.+.++. |...|++++| +.||.++++.+.|+.|+|||.++++....-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sf--n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSF--NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEe--ccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999987 9999999999 55888999999999999999999988887766654 455667888888 6
Q ss_pred EEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCee-EEEEeCCCCC
Q 001367 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL-LTTIDAGGGL 622 (1091)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~-~~~~~~~~~~ 622 (1091)
++.+.++-.+.++-+||...-+.-..+.... ..+.|.--.|.+|.+.++.++ .|+.|+-|.+....+ +.-+..-...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 6767777778999999977543322222111 134566667889888887654 899999999877653 2333222222
Q ss_pred CCCceEEEccC
Q 001367 623 PENPRICFNKN 633 (1091)
Q Consensus 623 ~~v~~v~~s~~ 633 (1091)
..-..+.|.|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 33456666664
No 172
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=3.2e-19 Score=193.50 Aligned_cols=286 Identities=19% Similarity=0.282 Sum_probs=220.6
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
.++.|.||...|.|+.|...|+ .+++|+.|..|+||..+++.++.. ..||++.|+.++.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVS 241 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccc
Confidence 4466889999999999999998 569999999999999999999976 88999999999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE---ec
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FE 482 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~ 482 (1091)
.+..++|+++.|..|++|.+.++..+. .+.||++.|++++|+|- .+.+.||++++||..-.-.+.. ++
T Consensus 242 ~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~ 312 (1113)
T KOG0644|consen 242 SNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLK 312 (1113)
T ss_pred hhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCC
Confidence 999999999999999999999997766 68899999999999993 3688899999999771111111 11
Q ss_pred C-CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCC-EEEEEecCCCCceEEEEE
Q 001367 483 G-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 483 ~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~~~~~~~~i~iw 560 (1091)
. ....+.++.| ..++.-+++++.|+.-..|.+.... .+...+.-+.++.|-. +.++.- .+..+.+|
T Consensus 313 ~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar----~~~~~~vw 380 (1113)
T KOG0644|consen 313 FTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTAR----NDHRLCVW 380 (1113)
T ss_pred cccccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeee----eeeEeeee
Confidence 1 1233444444 4566678999999988887553211 1111111222222322 222222 26678999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1091)
++.+|...+.+.+|. ..+..+.++|-+..++ +++.||...|||+-.|.+++..... + ..+....||+||..++.
T Consensus 381 nl~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 381 NLYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred ecccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEec
Confidence 999999999999988 8999999999887665 5899999999999999888877643 2 35677899999999999
Q ss_pred EECCCeEEEEECCCCCee
Q 001367 640 IANENRIKILETPESNSV 657 (1091)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~ 657 (1091)
..+-|.++|.....+...
T Consensus 456 sd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 456 SDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCCCCceEEeccCCCccc
Confidence 999999999987765443
No 173
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.79 E-value=3.5e-18 Score=169.47 Aligned_cols=173 Identities=22% Similarity=0.365 Sum_probs=147.4
Q ss_pred hheeeecccCCCCcEEEEEcC--CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHP--VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fsp--dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1091)
...+.+..+|.++=.+++||| .|+ |++|..-+.|++|...+|.-... ..-+.+|+..|-.
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVED 262 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVED 262 (440)
T ss_pred cCceEEecccCccceeeecccccccc--cccCccccceEeeeeccCceeec----------------Cccccccccchhh
Confidence 567788999999999999999 554 58888889999999998865432 1227789999999
Q ss_pred EEECCC-CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC---CCce
Q 001367 402 VVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSR 477 (1091)
Q Consensus 402 l~~spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~ 477 (1091)
++|||. ...+|+|+.||+|+|||+..+.....+ ..+.|.+.|+.|.|+.+-. +|++|+.||+++|||++ .+++
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~p 339 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQP 339 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCc
Confidence 999994 678999999999999999998543333 3478999999999998877 89999999999999987 4678
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1091)
+..|+.|..+|+++.|+|..+ ..|++++.|.+|.+||+..
T Consensus 340 VA~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 340 VATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ceeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 899999999999999998765 5888899999999999854
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=2.5e-17 Score=160.09 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=146.3
Q ss_pred eeEEEecCCCCEEEEEeCCeEEEEEcc-CceeEE---Ee----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc
Q 001367 804 VPCFALSKNDAYLFSASGGVISLYIVM-TFKTIL---TI----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875 (1091)
Q Consensus 804 v~~l~~s~dg~~la~~~dg~i~iwd~~-~~~~~~---~~----~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~ 875 (1091)
..+++|+|||..|..|....|++||+. .|..-. ++ .+..+-|.+++|+|.+.+.+|+|+...++-||.-..+
T Consensus 161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 347888888888888888888888883 333211 11 1235678999999988889999999999999999999
Q ss_pred ceeeeeccccCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-
Q 001367 876 EVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 953 (1091)
Q Consensus 876 ~~~~~l~~h~~~V~~l~~spdg~~las~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~- 953 (1091)
.++..+-+|.+.|+.+.|.+||+.|.+|+. |-.|..||+.... ..+-.+..|......-......|+|++||+|
T Consensus 241 ~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~ 316 (406)
T KOG2919|consen 241 RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASGD 316 (406)
T ss_pred CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeeccC
Confidence 999999999999999999999999999875 6789999998743 2233333333211122244557999999996
Q ss_pred ecCeEEEEEcCC-cceeeeeecCCccCEEEEEEeeCCCEEEEEEcC
Q 001367 954 HETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 998 (1091)
Q Consensus 954 ~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d 998 (1091)
.+|.|++||.++ |..+.. ...|...+..+++.|-=.+++|++..
T Consensus 317 tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 317 TDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc
Confidence 899999999998 554554 55678899999999987778887654
No 175
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=3.9e-18 Score=173.10 Aligned_cols=213 Identities=17% Similarity=0.266 Sum_probs=171.9
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 408 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 408 (1091)
-.+|++.|-+++|..+-+.+||+||.|.+|++||+.+|++..+ +..|+..|.+++|+| ..
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s-------------------~~~~~k~Vq~l~wh~~~p 299 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS-------------------ITHHGKKVQTLEWHPYEP 299 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCccee-------------------hhhcCCceeEEEecCCCc
Confidence 4689999999999999989999999999999999999998865 667999999999999 67
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecCCCcc
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAP 487 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~ 487 (1091)
.+|++|+.|++|.+.|............ -.+.|..++|.|.... .++++..||+|+-+|++.. +++.+++.|.++
T Consensus 300 ~~LLsGs~D~~V~l~D~R~~~~s~~~wk---~~g~VEkv~w~~~se~-~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ 375 (463)
T KOG0270|consen 300 SVLLSGSYDGTVALKDCRDPSNSGKEWK---FDGEVEKVAWDPHSEN-SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE 375 (463)
T ss_pred eEEEeccccceEEeeeccCccccCceEE---eccceEEEEecCCCce-eEEEecCCceEEeeecCCCCCceeEEEeccCC
Confidence 8999999999999999985333332222 3456899999998876 7788889999999999864 899999999999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceee--ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
|.+++++.... .++++++.|+.|++|++........ ....-+...|+++.|+-.++++.++. .+.+++||+.+.
T Consensus 376 ISgl~~n~~~p-~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~---k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 376 ISGLSVNIQTP-GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGE---KAVLRVWDIFTN 451 (463)
T ss_pred cceEEecCCCC-cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCc---cceEEEeecccC
Confidence 99999976544 4899999999999999876554332 22222346778888887766655442 447999998876
Q ss_pred eeeE
Q 001367 566 AIKR 569 (1091)
Q Consensus 566 ~~~~ 569 (1091)
..++
T Consensus 452 ~~V~ 455 (463)
T KOG0270|consen 452 SPVR 455 (463)
T ss_pred hhHH
Confidence 5543
No 176
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.2e-17 Score=162.67 Aligned_cols=302 Identities=12% Similarity=0.110 Sum_probs=213.9
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
+.+-+.+|.+.|.++.||.+++ +||+|+.|..++||++...-..++ ..+++. .-..|...|.|++|.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~-~~~~H~SNIF~L~F~ 114 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT-----------PKPIGV-MEHPHRSNIFSLEFD 114 (609)
T ss_pred hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC-----------CCCcee-ccCccccceEEEEEc
Confidence 3345789999999999999998 789999999999999865322221 001111 123467899999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc-e--eEEec
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-R--TYSFE 482 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~--~~~~~ 482 (1091)
...++|.+|+.+++|...|+++.+.+... .-....+.|..+..+|..+ .+++.+.++.|.+||..... . +..+.
T Consensus 115 ~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A 191 (609)
T KOG4227|consen 115 LENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPA 191 (609)
T ss_pred cCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeec
Confidence 99999999999999999999997655421 1112334899999999977 79999999999999987654 2 22223
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee-------eecCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
.......++.|+|.. ..+|++.+..+-+-+||.+...... .+.......+++.|+|+|+.+++.-. ..
T Consensus 192 N~~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~ 266 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GK 266 (609)
T ss_pred CCCccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cC
Confidence 344556677787754 3688999999999999987654332 11222234478899999999887643 22
Q ss_pred EEEEEecCCceee-EEEecccc----cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------
Q 001367 556 FLVEWNESEGAIK-RTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------------------- 610 (1091)
Q Consensus 556 ~i~iwd~~~~~~~-~~~~~~~~----~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~-------------------- 610 (1091)
.-.+||+.+..+. ..+. |.. ....+.+++|..|- .+++|+.+-.|++|.+...
T Consensus 267 ~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 267 CPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred CCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 2456777664432 2222 121 12356778887654 4899999999999987521
Q ss_pred ---eeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 611 ---QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 611 ---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
+.+..+.+|. ..++.|.|+|...+|++.+..+.+++|.-.
T Consensus 345 ~i~~~~~VLrGHR--Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 FIEKELTVLRGHR--SVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecceeEEEeccc--ccccceeecCCcceEeccchhhheeccccc
Confidence 1123444444 357899999999999999999999999754
No 177
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3e-18 Score=175.60 Aligned_cols=302 Identities=16% Similarity=0.224 Sum_probs=235.5
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+...|.+|.+.|..|.|...|. +|++|+.|..|.+||+..+..+..+ ..||...|..-.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKF 193 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKF 193 (559)
T ss_pred hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc------------------ccccccchhhhhc
Confidence 45667899999999999999998 7899999999999999998876531 5679889988889
Q ss_pred CC--CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe-
Q 001367 405 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 481 (1091)
Q Consensus 405 sp--dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~- 481 (1091)
-| +.+-+++++.||.|++=.+...........+..|.++|..++.-|+..+ .|.+++.|+.+.-.|+.++.....+
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence 88 5678999999999999887655545545567789999999999999887 7999999999999999887654433
Q ss_pred --cCCCc---ceEEEeecccCCceEEEEEecCCeEEEEecCCCCce------eee------cCCCCcEEEEEEcCCCCEE
Q 001367 482 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRL 544 (1091)
Q Consensus 482 --~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~------~~~~~~i~~~~~s~d~~~l 544 (1091)
..+.. ..++++..|.+ ...+++++.|..+++||.+..... ..+ ......|++++|+.++.-|
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeccCCccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 22333 45677776653 358999999999999997653322 111 1223368999999877666
Q ss_pred EEEecCCCCceEEEEEecCC--c----------eee-EEEecccccccceEEEE-EcCCCCEEEEEeCCCeEEEEECCCC
Q 001367 545 FSCGTSKEGESFLVEWNESE--G----------AIK-RTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV 610 (1091)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~--~----------~~~-~~~~~~~~~~~~v~~v~-~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1091)
++... +..|+++.... | ..+ +.+++|... ..|..+- |.|...++++|+.-|.|.||+-.++
T Consensus 352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence 66654 44588885432 2 222 337787732 3466665 5788999999999999999999999
Q ss_pred eeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
+.+..+.+..+ -|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99998887766 6899999999999999999999999987544
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=2.9e-17 Score=163.88 Aligned_cols=238 Identities=14% Similarity=0.182 Sum_probs=178.8
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC-
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD- 407 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 407 (1091)
...||+++|..++|.|-....+|+||.|.+|.||++..+.+..... -+...+.||...|.-++|+|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------epvv~L~gH~rrVg~V~wHPtA 143 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------EPVVELYGHQRRVGLVQWHPTA 143 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------cceEEEeecceeEEEEeecccc
Confidence 3579999999999999777789999999999999998776554321 123348899999999999995
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
.+.|++++.|.+|.+||+.+|+.+- ++. |...|.++.|+.||. +++|.+.|..|+|||..+++.+..-.+|.+.
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 5788999999999999999998655 444 999999999999999 8999999999999999999999988888764
Q ss_pred eE-EEeecccCCceEEEEEe---cCCeEEEEecCCCCceeeec--CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe
Q 001367 488 VY-SLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 488 v~-~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 561 (1091)
-. .+.| -.++.++.+|. .+..+-+||..+.+....+. .....|.--.|.+|...+..++ .||+.|+.|.
T Consensus 218 k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~G---KGD~~IRYyE 292 (472)
T KOG0303|consen 218 KPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCG---KGDSSIRYFE 292 (472)
T ss_pred CcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEe---cCCcceEEEE
Confidence 22 2233 34555444432 45679999987766544222 2344566667889999999887 4688899999
Q ss_pred cCCceeeE-EEecccccccceEEEEEcCCC
Q 001367 562 ESEGAIKR-TYQGLQLQHNSVSVVHFDTAK 590 (1091)
Q Consensus 562 ~~~~~~~~-~~~~~~~~~~~v~~v~~~~~~ 590 (1091)
+....+.. -+.... ...+-..+.|-|..
T Consensus 293 it~d~P~~hyln~f~-S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 293 ITNEPPFVHYLNTFS-SKEPQRGMGFMPKR 321 (472)
T ss_pred ecCCCceeEEecccc-cCCccccccccccc
Confidence 87765322 221111 12345566666643
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1e-17 Score=158.20 Aligned_cols=293 Identities=17% Similarity=0.196 Sum_probs=200.2
Q ss_pred chheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeec-CCCccEEE
Q 001367 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR 401 (1091)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~ 401 (1091)
|......|++|.+.|+++.|-.+++ |.+|...|.|++|++++.+.+.. +. .|...|+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~ 61 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN 61 (323)
T ss_pred CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence 3445567889999999999999996 58899999999999998875532 33 46788999
Q ss_pred EEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC-----CCce--EEEEeeCCC-cEEEEeCC
Q 001367 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-----CKQI--SVITCGDDK-TIKVWDAV 473 (1091)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-----~~~~--~l~s~~~d~-~i~iwd~~ 473 (1091)
+.--|+ ..|.+-+.|+.+.+|++..+..+ ..|.-.++++-|.+- ++.. .++.-+... .+.+-|..
T Consensus 62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g 134 (323)
T KOG0322|consen 62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG 134 (323)
T ss_pred eeecCC-cchhhcCCCceEEEEEccCcceE------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccC
Confidence 999998 56778889999999999876432 245555666666542 1110 111111110 01111211
Q ss_pred CCceeEEe----cCCCcceEEEeeccc-CCceEEEEEecCCeEEEEecCCCCcee----------eecCCCCcEEEEEEc
Q 001367 474 TGSRTYSF----EGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARV----------DYDAPGLGCTRMAYS 538 (1091)
Q Consensus 474 ~~~~~~~~----~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~i~~~~~s 538 (1091)
....++.. .+..+.+.+..+... ...-++++|.++|.+.+||+.++.... ....+..++.++.+.
T Consensus 135 ~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya 214 (323)
T KOG0322|consen 135 DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA 214 (323)
T ss_pred ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec
Confidence 11111111 122344555543222 122357788899999999999874333 344567789999988
Q ss_pred CCCCEEEEEecCCCCceEEEEEecCC--cee-eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEE
Q 001367 539 ANGRRLFSCGTSKEGESFLVEWNESE--GAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 539 ~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 615 (1091)
+.-..=++++. ...+..|+++. +.+ ++..... .+..+..+..-||++.+++++.|+.||||+.++..++..
T Consensus 215 s~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV 288 (323)
T KOG0322|consen 215 SSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV 288 (323)
T ss_pred hhhcCCcCCCc----cccceeeeeccccCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh
Confidence 75544445443 33466776653 222 1111111 135688889999999999999999999999999999999
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
+..|.. .|++++|+|+..++|.++.|++|.+|++
T Consensus 289 LkyHsa--gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 LKYHSA--GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhc--ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 988864 7999999999999999999999999986
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.7e-17 Score=156.79 Aligned_cols=304 Identities=15% Similarity=0.178 Sum_probs=202.0
Q ss_pred eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 568 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
...+.+|. ..++++.|..++ ++++|..-|.|.+|++.+.+....+...+. ..|..+..-|+ ..+.+-+.|..+.
T Consensus 7 ~fvLRp~~---~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 7 FFVLRPHS---SSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred eeEecccc---chheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEE
Confidence 34455666 889999998765 499999999999999999988888875544 35677777776 5688889999999
Q ss_pred EEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCC----CcccccccccccccccccccCCcccc
Q 001367 648 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDV----KPEISVEAENKSEVEKPLFARPSECQ 723 (1091)
Q Consensus 648 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~----~~l~s~~~d~~i~~w~~~~~~~~~~~ 723 (1091)
+|++..+..+. .|.-.++++-|++..- .+.+ ..++.-+. +.-.+-..+.+...+.+
T Consensus 81 lw~ia~s~~i~---i~Si~~nslgFCrfSl----------------~~~~k~~eqll~yp~r-gsde~h~~D~g~~tqv~ 140 (323)
T KOG0322|consen 81 LWTIAYSAFIS---IHSIVVNSLGFCRFSL----------------VKKPKNSEQLLEYPSR-GSDETHKQDGGDTTQVQ 140 (323)
T ss_pred EEEccCcceEE---Eeeeecccccccccee----------------ccCCCcchhheecCCc-ccchhhhhccCccceeE
Confidence 99998754332 2223344444443221 1111 11222111 11111112222233333
Q ss_pred eeecCCccccccEEEEEEe-cCCC--eEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCC
Q 001367 724 SLLLPSKVKANKISRLTYN-NGGQ--AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 800 (1091)
Q Consensus 724 ~~~~~~~~~~~~i~~~~~s-~dg~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1091)
...-+.....+.+.+..+. .++. .++++-++|.+.+||+........ -+..|... .....|
T Consensus 141 i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~-------~~~~~kv~---------~~~ash 204 (323)
T KOG0322|consen 141 IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ-------LPQSSKVE---------SPNASH 204 (323)
T ss_pred ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec-------cccccccc---------cchhhc
Confidence 3333334455666666532 2233 346666789999999876522111 01112111 122348
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEEccC--ceeE--EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc
Q 001367 801 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~ 875 (1091)
..+|.++.+.+.-..=++++ +..+..|.++. +.+. .++......|..+.+-| |++.+|+++.|+.|+||+.++.
T Consensus 205 ~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 205 KQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred cCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccC
Confidence 89999999987655555555 56788887763 3322 22333455788899999 9999999999999999999999
Q ss_pred ceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q 001367 876 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 914 (1091)
Q Consensus 876 ~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~ 914 (1091)
.++..++-|.+.|.+++|+||...+|.+|.|+.|.+|++
T Consensus 284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999986
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=6.9e-16 Score=159.80 Aligned_cols=498 Identities=12% Similarity=0.164 Sum_probs=286.6
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE--CCCCC
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW--SPDGS 409 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--spdg~ 409 (1091)
.|+..|.|+.|+.+.. ++.++ .|..+.+|+-.+........++ ...++. ..| +....- -....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~~~p-------~df~pt---~~h---~~~rs~~~g~~~d 76 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVAKLP-------DDFVPT---DMH---LGGRSSGGGKGSD 76 (737)
T ss_pred ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhhhhCC-------cccCCc---ccc---ccccccCCCCCcc
Confidence 5677888999999987 55554 4555555554333322211100 000000 001 000000 01235
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
.++.++.||.+.|-+-.. +.-+ .+..|.+.|.+-.|+|||. -|+++|.||.|++|. ++|-...++.....+|+
T Consensus 77 ~~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR 149 (737)
T ss_pred eEEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence 788888999888876443 2222 4678999999999999999 799999999999999 88877777777788999
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1091)
|++|.|+.+ ..+++.+ +.+.|=-+........++.|.+-|.++.|++.++.+++++. |....+||.. |..+.
T Consensus 150 c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf 221 (737)
T KOG1524|consen 150 CARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLF 221 (737)
T ss_pred EEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Ccccc
Confidence 999977654 3444433 45666666777778889999999999999999999999986 7779999965 44444
Q ss_pred EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEE
Q 001367 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1091)
Q Consensus 570 ~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1091)
.-..|. .+|++++|+|+ +.++.++. .+++ +.. .....|..++||+||..+++|+..|.+.+=
T Consensus 222 ~S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 222 TSAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cCChhc---cceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 445555 89999999999 55555553 2333 111 112468899999999999999999987653
Q ss_pred ECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCC
Q 001367 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 729 (1091)
Q Consensus 650 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~ 729 (1091)
-+-..+... +..-++......|.+-|+.. ..+..+.++
T Consensus 284 ~~ieq~l~~--------------------------------------~n~~~t~~~r~~I~vrdV~~---~v~d~LE~p- 321 (737)
T KOG1524|consen 284 YAIEQQLVS--------------------------------------GNLKATSKSRKSITVRDVAT---GVQDILEFP- 321 (737)
T ss_pred eeehhhhhh--------------------------------------ccceeEeeccceEEeehhhh---hHHHHhhCc-
Confidence 322211110 00011111112222222221 111222222
Q ss_pred ccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEe
Q 001367 730 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 809 (1091)
Q Consensus 730 ~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 809 (1091)
.++..... .-.+|+++.. ..+++|.-.. -+++.+.|.+.+. +.-+.-
T Consensus 322 ----~rv~k~sL--~Y~hLvvaTs-~qvyiys~kn-----------wntpiiidgre~t---------------r~lieq 368 (737)
T KOG1524|consen 322 ----QRVVKFSL--GYGHLVVATS-LQVYIYSEKN-----------WNTPIIIDGREDT---------------RNLIEQ 368 (737)
T ss_pred ----cceeeeee--ceeEEEEEec-cEEEEEecCC-----------ccCcEEEeccccc---------------hhHhhh
Confidence 23333332 2223444333 2455543110 0011111111111 100100
Q ss_pred cCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCC-----eEEEEEcCCCCcEEEEE--eCCCeEEEEec-cCcceee--
Q 001367 810 SKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVIS-- 879 (1091)
Q Consensus 810 s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~~~~~la~g--~~dg~i~iwd~-~~~~~~~-- 879 (1091)
..+++......++.+|..+ |+.....+.+... -..+...- ..|+.- .....+.+||. .+|+...
T Consensus 369 --~ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLan---dtLaird~ad~kvlhlFd~istgk~qgDg 442 (737)
T KOG1524|consen 369 --GEKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLAN---DTLAIRDNADPKVLHLFDLISTGKRQGDG 442 (737)
T ss_pred --hhhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeeccc---ceEEeecCCCCeeEEeccCCCCCcccCCc
Confidence 1123333334556676654 3332222222211 12233332 244442 23347888998 6776542
Q ss_pred eeccccCCeEEEEEC----CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEec
Q 001367 880 KLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 955 (1091)
Q Consensus 880 ~l~~h~~~V~~l~~s----pdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d 955 (1091)
.+-.|...|..++.. ++.+.++.-...+.++|=.+++-... .+.++. ...+..++|+...+.|.--.|
T Consensus 443 k~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgke-e~I~Ki-------GTmVhtLawndttNiLcglqD 514 (737)
T KOG1524|consen 443 KSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKE-EEIYKI-------GTMVHTLAWNDTTNILCGLQD 514 (737)
T ss_pred cccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCch-hhhhhh-------hhhhhhhhhccccceeeeecc
Confidence 223366777777764 45577888888888888777652211 111111 125788999999888887899
Q ss_pred CeEEEEEcCCc
Q 001367 956 THLAIYEAEEL 966 (1091)
Q Consensus 956 ~~i~vwd~~~~ 966 (1091)
+.+.||-..+.
T Consensus 515 t~fsVWy~pn~ 525 (737)
T KOG1524|consen 515 TCFSVWYYPNE 525 (737)
T ss_pred ceEEEEEcCCc
Confidence 99999987643
No 182
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.2e-18 Score=193.27 Aligned_cols=251 Identities=14% Similarity=0.153 Sum_probs=197.1
Q ss_pred CcEEEEEcCCCce---EEEEEcCCCcEEEEEcCCC---CceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 336 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 336 ~V~~v~fspdg~~---llasg~~dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
.-..++|.+.|.. ++|.|..||.|.+||...- .... -......|++.|..+.|++.+.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------VLATKSKHTGPVLGLDFNPFQG 129 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------HHhhhcccCCceeeeeccccCC
Confidence 6778999888876 6899999999999998652 1111 0111557999999999999655
Q ss_pred -EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc--
Q 001367 410 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-- 486 (1091)
Q Consensus 410 -~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-- 486 (1091)
+||+|+.||.|.|||+..-+...... -......|.+++|+..-.. +|++++.+|.+.|||++..+.+-.+..+..
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999999999999998744322110 1124567999999987665 799999999999999999988877766654
Q ss_pred ceEEEeecccCCceEEEEEecCC--eEEEEecCCCC-ceeeecCCCCcEEEEEEcCCC-CEEEEEecCCCCceEEEEEec
Q 001367 487 PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
.+..+.|+|+...+++++...|+ .|.+||++... ...++..|...|.++.|++.+ ++|++++. |+.|.+|+.
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~ 283 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNP 283 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecC
Confidence 46788999886655555544444 49999988655 445678999999999999976 77788775 667999999
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 611 (1091)
++++.+..+.... +.+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 284 ~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 284 NTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999988755 8999999999887 66668999999999987654
No 183
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=4.4e-16 Score=151.68 Aligned_cols=335 Identities=14% Similarity=0.206 Sum_probs=221.7
Q ss_pred EEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeE
Q 001367 535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL 613 (1091)
Q Consensus 535 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~ 613 (1091)
.+|||+|++++++. +..+.+-|..+-+..+.+... +.|..+.|..|.-++++ ...++.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 57999999999997 446888888877766655543 36778899999888877 568889999999988887
Q ss_pred EEEeCCCCCCCCceEEEccCCCEEEEE-ECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCC
Q 001367 614 TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNED 692 (1091)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~ 692 (1091)
..+.... ..+..++|||||+.+... .-+-.|.+|.+.+.+... ++-....+..++|+|+++..++.......
T Consensus 85 ckIdeg~--agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCk---- 157 (447)
T KOG4497|consen 85 CKIDEGQ--AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCK---- 157 (447)
T ss_pred EEeccCC--CcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHH----
Confidence 7776543 368899999999766555 458899999998775443 33334455777886655554433221100
Q ss_pred CCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC--ceEEEeecCCcccccc
Q 001367 693 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLS 770 (1091)
Q Consensus 693 ~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d--g~i~vw~~~~~~~~~~ 770 (1091)
-.+.-. .-+-|.+-. .-....-..+.+.|+|||..+++-..- -.+..|.
T Consensus 158 ------dyv~i~---~c~~W~ll~-----------~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe--------- 208 (447)
T KOG4497|consen 158 ------DYVQIS---SCKAWILLK-----------EFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE--------- 208 (447)
T ss_pred ------HHHHHH---hhHHHHHHH-----------hcCCCcccccCceECCCCcEEEEecchhhheeeeee---------
Confidence 000000 001121110 001123345678888888866543321 1111111
Q ss_pred cceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEE-------------
Q 001367 771 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTIL------------- 836 (1091)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~------------- 836 (1091)
-.-.+..++++|.++++++|+ |+.+|+.+--+.+...
T Consensus 209 -----------------------------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~ 259 (447)
T KOG4497|consen 209 -----------------------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTL 259 (447)
T ss_pred -----------------------------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchh
Confidence 234677788888888888887 7777765533222111
Q ss_pred -----------------------------------------------Ee------cCCCCCeEEEEEcCCCCcEEEEEeC
Q 001367 837 -----------------------------------------------TI------MPPSPTATSLAFNPHDNNVIAIGMD 863 (1091)
Q Consensus 837 -----------------------------------------------~~------~~~~~~i~~l~~s~~~~~~la~g~~ 863 (1091)
.+ ..+...+.-++|++ |..++|+-.+
T Consensus 260 ~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd 338 (447)
T KOG4497|consen 260 HLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRND 338 (447)
T ss_pred hhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecC
Confidence 11 12233567789999 8888887653
Q ss_pred C--CeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEE
Q 001367 864 D--STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 941 (1091)
Q Consensus 864 d--g~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 941 (1091)
. +.+.+||++..+....+. ...+|.+..|.|....|+.+.....+++|.... ..++..+.... .|..+
T Consensus 339 ~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg-----~~~V~vP~~GF----~i~~l 408 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG-----PRVVGVPKKGF----NIQKL 408 (447)
T ss_pred CCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC-----ceEEecCCCCc----eeeeE
Confidence 3 589999999877666555 556899999999999999888888899999887 34454444333 48999
Q ss_pred EEcCCCCEEEEEe
Q 001367 942 QFHKDQTRFLLVH 954 (1091)
Q Consensus 942 ~fs~dg~~la~~~ 954 (1091)
.|.-+|..++...
T Consensus 409 ~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 409 QWLQPGEFIVLCG 421 (447)
T ss_pred EecCCCcEEEEEc
Confidence 9999999988743
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.3e-15 Score=142.30 Aligned_cols=288 Identities=12% Similarity=0.145 Sum_probs=196.4
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.|.+-+++|.+++++++..+|.|.+..+..-.. +.+. ..|+..+ .++.+|+.++..++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa~----------~~gk~~i---v~eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSAE----------PPGKLKI---VPEQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---cccC----------CCCCcce---eeccccCCCeeeeeee--hh
Confidence 455668899999999999999999998764321 0100 0111111 1224699999999997 56
Q ss_pred EEEEEeCCeEEEEEccCcee------EEEec-------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee
Q 001367 815 YLFSASGGVISLYIVMTFKT------ILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 881 (1091)
Q Consensus 815 ~la~~~dg~i~iwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l 881 (1091)
+|.+++||.|+-|....... +.+.. .....|.++-..|..+.++. ++.|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEE
Confidence 78888899999998653221 11111 12347899999995555555 558999999999999999999
Q ss_pred ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCc--CCCCCceEEEEcCCCCEEEEEecCeEE
Q 001367 882 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKDQTRFLLVHETHLA 959 (1091)
Q Consensus 882 ~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~fs~dg~~la~~~d~~i~ 959 (1091)
+||++.|.+++--.....+.||++||++++||.++++.....-........ ....+|. +..-+..+|++|....+.
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvCGgGp~ls 230 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVCGGGPKLS 230 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE--EEeccCceEEecCCCcee
Confidence 999999999998555567889999999999999997654321111111111 1112333 444566799999889999
Q ss_pred EEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCC
Q 001367 960 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1039 (1091)
Q Consensus 960 vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p 1039 (1091)
+|.+++.++...+.. ..+|..+.|-.| .+++++....|.-|.+.. .+...+. .. ....++.+..-+|
T Consensus 231 lwhLrsse~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G-vl~a~ip------~~--s~~c~s~s~~~~p 297 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG-VLQANIP------VE--STACYSASWQTSP 297 (325)
T ss_pred EEeccCCCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeecc-EEEEecc------CC--ccceeeecccCCc
Confidence 999999988877543 567888888765 677788888999998753 3332221 11 1223334445566
Q ss_pred CCCCeEEEEecCCcEEEEe
Q 001367 1040 LKPTQFAVGLTNGEVYVIE 1058 (1091)
Q Consensus 1040 ~d~~~l~~g~~dg~v~~w~ 1058 (1091)
=+++-.++-.+.++++.
T Consensus 298 --~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 298 --IKFISIAGFSNKLHILK 314 (325)
T ss_pred --eEEEEecccceeeeeee
Confidence 25677777777787753
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.9e-17 Score=173.28 Aligned_cols=262 Identities=15% Similarity=0.199 Sum_probs=196.4
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEee-----CCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1091)
.+..|...|+.++|.|-...|++++.||++.+|+++ ....+.++.++++|.++|.|++.+++++ .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 367799999999999999999999999999999993 2334677889999999999999999999 899999999
Q ss_pred cEEEEeCCC------C----ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC--CcEE
Q 001367 466 TIKVWDAVT------G----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCT 533 (1091)
Q Consensus 466 ~i~iwd~~~------~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~ 533 (1091)
+|+.|++.. . .....+.||.+.|+.++++..++ .|++++.||+++.|+...... ..+.... +--.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999996541 1 23456789999999999987664 699999999999998766554 2222221 1223
Q ss_pred EEEEcCCC-CEEEEEecCCCCceEEEEEecCCceeeEEEecccc----cccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001367 534 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 534 ~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1091)
++.+.... ...++... .+.-.+.+...+..+..+..... ....+..+.++|.+...+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44443322 12222211 22233444444444444432221 12457778899999999999999999999999
Q ss_pred CCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccc
Q 001367 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 663 (1091)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 663 (1091)
+++++.....+.. .+.++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 520 ~~~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 520 TGKILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ccccchheeeccc--eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 9999988876643 6899999999999999999999999999877666554433
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.9e-16 Score=157.35 Aligned_cols=295 Identities=11% Similarity=0.073 Sum_probs=211.8
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCc---ccceeEEEe--ccccCeeEEEEcCCCCceEEEEeeCCC
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDK 465 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~---~~~~~~~~~--~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1091)
-+.+|.+.|.++.||.++++||+|+.|..+++|++...- ..+.+ .+. .|...|.|++|...++ .+++|+.++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI-~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~ 127 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI-GVMEHPHRSNIFSLEFDLENR--FLYSGERWG 127 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc-eeccCccccceEEEEEccCCe--eEecCCCcc
Confidence 377899999999999999999999999999999986421 11222 122 3557999999998887 899999999
Q ss_pred cEEEEeCCCCceeEEecC--CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCC---ceeeecCCCCcEEEEEEcCC
Q 001367 466 TIKVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN 540 (1091)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~d 540 (1091)
+|...|+++.+.+..+.. ..+.|+.+..+|. ...+++.+.+|.|.+||.+... ..+...........+.|+|.
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999999998887742 2358999988776 3589999999999999998655 23334445557788999998
Q ss_pred CCEEEEEecCCCCceEEEEEecCCcee-eEE---EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeE-EE
Q 001367 541 GRRLFSCGTSKEGESFLVEWNESEGAI-KRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL-TT 615 (1091)
Q Consensus 541 ~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~---~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~ 615 (1091)
...|+....+.. -+-+||.+.... +.. +.+.......-.++.|+|+|+.+++.-....-..||+.+.++. ..
T Consensus 206 ~P~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 206 TPALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK 282 (609)
T ss_pred CceeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence 776665544333 378999875432 211 1222211123456789999999998766666677887764433 22
Q ss_pred EeCCC----CCCCCceEEEccCCCEEEEEECCCeEEEEECCCC-----------------------Ceecccccccccce
Q 001367 616 IDAGG----GLPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLR 668 (1091)
Q Consensus 616 ~~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~v~ 668 (1091)
+.... ....+.+++|..|- .+++|+++-.|++|.+... ..+..+++|..-++
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~N 361 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPN 361 (609)
T ss_pred ccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccc
Confidence 22111 12346677887654 4999999999999998732 12344556666666
Q ss_pred eeeeccccccccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 669 KLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 669 ~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
.+.| ++....+++.+-.+.+++|.-.
T Consensus 362 QVRF---------------------~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 362 QVRF---------------------SQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceee---------------------cCCcceEeccchhhheeccccc
Confidence 6666 7778888999999999999843
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.5e-15 Score=141.71 Aligned_cols=281 Identities=16% Similarity=0.204 Sum_probs=193.2
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
.|.+-++||.++ +|+.|..+|+|.+..+.+-..-.. ......+.....+|.++|..++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 677778999998 679999999999999854211000 000011112246899999999999 55677765
Q ss_pred CCCEEEEEEeeCCcc---cceeEE--Eeccc-----cCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC
Q 001367 416 SKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~---~~~~~~--~~~h~-----~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
||.|+=|.+..... .+.+.+ ...|. -.|+++...|... -++.++.|+.++-||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998864322 111111 11233 2588899998777 46666689999999999999999999999
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC----------CcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG----------LGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
.-|.++... +....+++|+.||++++||.++.+....+.... ..|.++ .-+..++++++. .
T Consensus 157 DYvH~vv~R--~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgG-----p 227 (325)
T KOG0649|consen 157 DYVHSVVGR--NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGG-----P 227 (325)
T ss_pred ceeeeeeec--ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecCC-----C
Confidence 999999863 233479999999999999999988877554322 234444 456678888764 3
Q ss_pred EEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC-C
Q 001367 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-G 634 (1091)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~ 634 (1091)
.+.+|++++.++...+.-. ..+..+.|.. +.++++++.+.|.-|.+. |.+....+.... ......++.. -
T Consensus 228 ~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPI 298 (325)
T ss_pred ceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCce
Confidence 4999999999988888753 4777788854 578888888889999874 444444443322 3344444432 2
Q ss_pred CEEEEEECCCeEEEE
Q 001367 635 TLLAVIANENRIKIL 649 (1091)
Q Consensus 635 ~~l~~~~~dg~i~iw 649 (1091)
+.+-.++....+.|+
T Consensus 299 k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 299 KFISIAGFSNKLHIL 313 (325)
T ss_pred EEEEecccceeeeee
Confidence 345555555666655
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.3e-17 Score=169.51 Aligned_cols=270 Identities=14% Similarity=0.203 Sum_probs=192.6
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
...+|..|.+.|++++|.|-.. .+++++.||++++|+++....-.... ..+.-.+.+|.++|.|++++
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~-----------~epi~tfraH~gPVl~v~v~ 353 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKD-----------VEPILTFRAHEGPVLCVVVP 353 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccc-----------eeeeEEEecccCceEEEEec
Confidence 4458889999999999999987 67999999999999994421111111 11222388999999999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcc-------cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
+++..+.+|+.||+|+.|++..... ......+.||.+.|+.+++|+... .|++++.||+++.|+......
T Consensus 354 ~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~- 430 (577)
T KOG0642|consen 354 SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP- 430 (577)
T ss_pred CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-
Confidence 9999999999999999996652211 112235779999999999999887 699999999999999766555
Q ss_pred EEecCCCc--ceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC-------CCcEEEEEEcCCCCEEEEEec
Q 001367 479 YSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 479 ~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
.+|..... --.++.+..+. -...++...-+.--+.+++.......+... ...+..+...|.+...+++..
T Consensus 431 ~~f~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he 509 (577)
T KOG0642|consen 431 CTFGEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE 509 (577)
T ss_pred cccCCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc
Confidence 44432222 22333332111 012222222233333344433333332221 124567778888888888765
Q ss_pred CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
++.|+++|..++.++.....|. ..++++++.|+|.+|++++.|+.+++|.+....++.....
T Consensus 510 ----d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 510 ----DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred ----CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 6679999999999999888877 8999999999999999999999999999987666655443
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=1.6e-14 Score=159.04 Aligned_cols=198 Identities=12% Similarity=0.138 Sum_probs=124.8
Q ss_pred eEEEecCCCCEEEEEe--CCeEEEEEccC-ce---eEEEecCCCCCeEEEEEcCCCCcEEE-EEeCCCeEEEEeccCcce
Q 001367 805 PCFALSKNDAYLFSAS--GGVISLYIVMT-FK---TILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEV 877 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~---~~~~~~~~~~~i~~l~~s~~~~~~la-~g~~dg~i~iwd~~~~~~ 877 (1091)
..++++|+++++++++ ++.|.+|++.+ +. .+..+. +......++++| ++++++ +...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence 3455666666665554 46666666642 21 122222 223467789999 676664 555679999999986332
Q ss_pred ee-------eeccccCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCC--CceeeeeeeeccCCCcCCCCCceEEEEcCCC
Q 001367 878 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 947 (1091)
Q Consensus 878 ~~-------~l~~h~~~V~~l~~spdg~~las~s~-Dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg 947 (1091)
+. .... ......++|+|||++++++.. +++|.+|+++. ++......+...............+.|+|||
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 1111 234678999999999988776 89999999974 3322212222111111111123468999999
Q ss_pred CEEEEE--ecCeEEEEEcCCcce----eeeeecCCccCEEEEEEeeCCCEEEEEEc-CCcEEEEeCC
Q 001367 948 TRFLLV--HETHLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS 1007 (1091)
Q Consensus 948 ~~la~~--~d~~i~vwd~~~~~~----~~~~~~~h~~~v~~v~fs~dg~~l~t~~~-dg~v~iwd~~ 1007 (1091)
++|+++ .++.|.+|++..... +..... ......+.|+|||++|+++.. +++|.+|+++
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999986 457899999864332 222221 124557899999999998775 8999999875
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=1.4e-14 Score=144.38 Aligned_cols=243 Identities=11% Similarity=0.139 Sum_probs=186.2
Q ss_pred CccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
...+..+.|+.|...|..|+.|| -++|+...-.... ........|.-+-|+..=- .+++...-..+++.+.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSSLv--aiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSSLV--AIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeeccccee--EEEecCCCceEEEEEcccC
Confidence 34677778999999999999999 6888876543211 1112233566667765321 3333333345999999888
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC---CCcEEEEEEcCCCCEEEEEecCCC
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
..+..+. ...+|.++.+.. +.|+++-.+. |+|||+++.+.+.++... ...+.++++++.+.+++.-+..
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-- 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-- 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC--
Confidence 8887764 556788888732 3555555444 999999999888866543 3356666777777788876542
Q ss_pred CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
..|.|.+||..+-+.+..+..|. +.+.+++|+++|..++++|+.|+ |||+.+.+|+.+..+.-......|.+++|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred CCceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 25669999999999999999888 99999999999999999999997 799999999999999877666678999999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCC
Q 001367 632 KNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
|++++|++.++.++|++|.+....
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCCCeEEEecCCCeEEEEEecccc
Confidence 999999999999999999988553
No 191
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=5.4e-16 Score=148.47 Aligned_cols=258 Identities=17% Similarity=0.223 Sum_probs=185.3
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCC-------CcEEEEEcCCCCceeeeceeEEecccccccee--eeeecCCCcc
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFK--TALVRDPGVS 398 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~d-------g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~ 398 (1091)
.+|..|.++||.++-+|-.+++|++...+ -.+.||.+........ ..++. ..+-..+-+.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~-----------~~tlE~v~~Ldteavg~ 125 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN-----------SSTLECVASLDTEAVGK 125 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc-----------cchhhHhhcCCHHHhCc
Confidence 45677889999999999988899987653 2367887754322100 00000 0111245569
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEE---EeccccCeeEEEEcC--CCCceEEEEeeCCCcEEEEeCC
Q 001367 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAV 473 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~ 473 (1091)
|.|+.|.|++..||+-. |..|.+|++..+..+..... -.+|....++-+|+| ||. .+++.+ |+++..||++
T Consensus 126 i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~R 201 (370)
T KOG1007|consen 126 INCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLR 201 (370)
T ss_pred eeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEcc
Confidence 99999999999999876 77899999998765321111 113566788899998 666 455554 8899999999
Q ss_pred CCceeEEe-cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCC-ceeeecCCCCcEEEEEEcCCCCEEE-EEecC
Q 001367 474 TGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLF-SCGTS 550 (1091)
Q Consensus 474 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~-~~~~~ 550 (1091)
+.++...+ ..|...|..+.|.|+. ..+|++++.||.|++||.+..+ ....+..|...+.++.|+|....|+ +++.
T Consensus 202 T~~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S- 279 (370)
T KOG1007|consen 202 TMKKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS- 279 (370)
T ss_pred chhhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC-
Confidence 98887766 5688899999997764 4689999999999999998755 4568889999999999999765554 4443
Q ss_pred CCCceEEEEEecCCce-----------------------------eeEEEecccccccceEEEEEcCCCCEEEE-EeCCC
Q 001367 551 KEGESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH 600 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~dg 600 (1091)
+..|.+|...+-. .+.++..| ...|.+++|+.-..++++ -+.||
T Consensus 280 ---Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh---EDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 280 ---DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH---EDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred ---CceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc---ccceEEEeeccCCCeeEEEeccCc
Confidence 5567777543211 12233344 489999999988888765 78999
Q ss_pred eEEEEECC
Q 001367 601 VIKIWDMN 608 (1091)
Q Consensus 601 ~i~iwd~~ 608 (1091)
.+.|=.+.
T Consensus 354 RviIs~V~ 361 (370)
T KOG1007|consen 354 RVIISSVP 361 (370)
T ss_pred eEEeecCC
Confidence 98876554
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=1.3e-15 Score=146.01 Aligned_cols=289 Identities=18% Similarity=0.262 Sum_probs=205.6
Q ss_pred eeecccCCCCcEEEEEc--CCCceEEEEEcC----CCcEEEEEc--CCCCceeeeceeEEeccccccceeeeeecCCCcc
Q 001367 327 AQTLIEGSSSPMSMDFH--PVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fs--pdg~~llasg~~----dg~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 398 (1091)
+.++..+- .+.++.|| |+.+..||.|+. .+.|.|-.+ .+++.+..-+ ..|.-+
T Consensus 38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP 98 (364)
T KOG0290|consen 38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP 98 (364)
T ss_pred EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence 45555555 88899998 566667899985 245555444 4454443211 258899
Q ss_pred EEEEEECCCC-----CEEEEEECCCEEEEEEeeCCcc-cceeE-----EEeccccCeeEEEEcCCCCceEEEEeeCCCcE
Q 001367 399 VNRVVWSPDG-----SLLGVAYSKHIVQLYAYHGGSD-ARQQL-----EIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1091)
Q Consensus 399 V~~l~~spdg-----~~las~~~d~~i~iwd~~~~~~-~~~~~-----~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1091)
++.+.|.|+. ++||+++ ..+++|.+...+. +.... +-..+..++++..|+.-... ++.+++-|-+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 9999999987 3666653 3599999984221 11111 12246679999999875554 89999999999
Q ss_pred EEEeCCCCc---eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee-eecCC--CCcEEEEEEcCC-
Q 001367 468 KVWDAVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAP--GLGCTRMAYSAN- 540 (1091)
Q Consensus 468 ~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~--~~~i~~~~~s~d- 540 (1091)
.|||+++|. ....+-.|...|..++|.. +....+++.+.||.+|++|++..+--. .+... ..+...++|++.
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 999999873 3456778999999999975 344789999999999999998765433 23322 457888899884
Q ss_pred CCEEEEEecCCCCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCee------
Q 001367 541 GRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQL------ 612 (1091)
Q Consensus 541 ~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~~~------ 612 (1091)
-+++++...+ ...|.+.|++.. ..+..+++|. ..|+.++|.|.. .++.+++.|..+.+||+...-.
T Consensus 255 pnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 255 PNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred chHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 4566665542 445899999864 5678888888 999999999975 5778899999999999976322
Q ss_pred EEEEeCCCCCCCCceEEEcc-CCCEEEEEECCCeEEE
Q 001367 613 LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKI 648 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 648 (1091)
+.... ...+|+.+.|++ .+..++++.. +++.+
T Consensus 329 ilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 329 ILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 11222 224689999996 5667777765 44444
No 193
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=2.7e-17 Score=178.83 Aligned_cols=288 Identities=14% Similarity=0.229 Sum_probs=225.9
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCe
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1091)
+.++.+.+|. +.|.|+.|...|.++++|+.|..++||.++++.++....+|.+ .++.++.+.+..++++++.|..
T Consensus 181 k~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 181 KNIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCce
Confidence 3445566766 8999999999999999999999999999999999999988866 7999999999999999999999
Q ss_pred EEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCccccee
Q 001367 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 725 (1091)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 725 (1091)
|++|.+..+.++..+.+|++.|++++|+|. .+.+.||++++||...... ...
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~-------------------------~sss~dgt~~~wd~r~~~~---~y~ 307 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-------------------------ASSSDDGTCRIWDARLEPR---IYV 307 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCcc-------------------------ccCCCCCceEecccccccc---ccC
Confidence 999999999999999999999999999763 2667789999999762110 000
Q ss_pred ecC-CccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCe
Q 001367 726 LLP-SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 804 (1091)
Q Consensus 726 ~~~-~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 804 (1091)
..| ......-+.++.|...+..+++++.++....|.+.... | +...+
T Consensus 308 prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~-----------------~~~~l 355 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W-----------------RSNLL 355 (1113)
T ss_pred CCCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------------h-----------------hccce
Confidence 011 11234567788888899999999999888887754211 1 12222
Q ss_pred eEEEecCCCC-EEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeec
Q 001367 805 PCFALSKNDA-YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 882 (1091)
Q Consensus 805 ~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~ 882 (1091)
.-+..+.|-. +.+++- +..+.+|++.+|...+.+.+|...+..+.++|.+.+...+++.||...|||+..|.+++...
T Consensus 356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence 2222222322 333333 67799999999999999999999999999999888888899999999999999988775543
Q ss_pred cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 001367 883 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 918 (1091)
Q Consensus 883 ~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~ 918 (1091)
...+.+...+||+||+.++....-|.+.|.....++
T Consensus 436 ~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 436 IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 334567778999999999988888999998765543
No 194
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=6.7e-16 Score=160.36 Aligned_cols=176 Identities=20% Similarity=0.237 Sum_probs=133.7
Q ss_pred EEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe-cCCCcceEEEeecccCCceEEEEEecCCeEEEE
Q 001367 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514 (1091)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 514 (1091)
++.||++.|++++|+.||. +|++|+.|-.+.|||.-..++++.+ .+|...|.++.|.|..+..++++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 6889999999999999999 8999999999999999988888877 689999999999999999999999999999999
Q ss_pred ecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCC-CEE
Q 001367 515 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQI 593 (1091)
Q Consensus 515 d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l 593 (1091)
|+...+....-. + ..+..+.+..|. ..|..++-.|++ ..+
T Consensus 123 dl~~~~~~~~d~--~----------------------------------~~~~~~~~~cht---~rVKria~~p~~Phtf 163 (758)
T KOG1310|consen 123 DLDSSKEGGMDH--G----------------------------------MEETTRCWSCHT---DRVKRIATAPNGPHTF 163 (758)
T ss_pred eccccccccccc--C----------------------------------ccchhhhhhhhh---hhhhheecCCCCCceE
Confidence 987533211100 0 011112223333 677778888888 677
Q ss_pred EEEeCCCeEEEEECCCCeeEE--------EEeCCCCCCCCceEEEcc-CCCEEEEEECCCeEEEEECC
Q 001367 594 LAAGDDHVIKIWDMNKVQLLT--------TIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~--------~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~ 652 (1091)
.++++||+|+-+|++....-. ............++..+| +..+|++|+.|--.++||..
T Consensus 164 wsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 164 WSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred EEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 889999999999997632110 001111122457889999 55789999999999999953
No 195
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=1.7e-15 Score=145.03 Aligned_cols=184 Identities=17% Similarity=0.233 Sum_probs=130.2
Q ss_pred CeeEEEecC--CCCEEEEEeCCeEEEEEccCceeEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc-cee
Q 001367 803 AVPCFALSK--NDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVI 878 (1091)
Q Consensus 803 ~v~~l~~s~--dg~~la~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~-~~~ 878 (1091)
..++-++|| ||..+++.+|++++.||+.+.++...+. .|...++.+.|.|+...+||++++||.|+|||.+.- .++
T Consensus 172 ~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred eecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc
Confidence 334445665 8899999999999999999888777665 577889999999977778999999999999999864 578
Q ss_pred eeeccccCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecC
Q 001367 879 SKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 956 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spd-g~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~ 956 (1091)
..+.+|+.-|.++.|.|. .+++.|+|.|..|.+|....-.... .+.|-.|..-.-. ....
T Consensus 252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~------------------qi~~~~dese~e~~dsee 313 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ------------------QIEFEDDESESEDEDSEE 313 (370)
T ss_pred cccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc------------------ccccccccccCcchhhHH
Confidence 999999999999999984 4678899999999999876522111 1111111000000 0000
Q ss_pred eEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCE-EEEEEcCCcEEEEeCCC
Q 001367 957 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 957 ~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~-l~t~~~dg~v~iwd~~~ 1008 (1091)
+++ -+..|. +. .+..|...|.+++||.-..+ +|+-+.||.|.|=.++.
T Consensus 314 r~k--pL~dg~-l~-tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 314 RVK--PLQDGQ-LE-TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hcc--cccccc-cc-cccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 111 011111 11 25578999999999986654 67888999998866543
No 196
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3e-16 Score=154.23 Aligned_cols=291 Identities=13% Similarity=0.171 Sum_probs=198.4
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee--cCCC-CcEE
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPG-LGCT 533 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~-~~i~ 533 (1091)
.++++-..|.|++||..+++.+..|+++...++.+.|........+.+++.||+|++||++.......+ ..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 577787899999999999999999999999999999976545678999999999999999987665433 3333 3566
Q ss_pred EEEEcCCCCEEEEEecCCCCceEEEEEecCCcee-eEEEe-cccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCC
Q 001367 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQ-GLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV 610 (1091)
Q Consensus 534 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~-~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~ 610 (1091)
+++..-.++.++++..-...+..+.+||++..+. ++.+. .| ...|+++.|+|.. +.|++||.||.|.+||++..
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH---~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESH---NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhc---cCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 7766667788887766555678899999998765 55543 34 4899999999975 57788999999999998764
Q ss_pred e----eEEEEeCCCCCCCCceEEEccCC-CEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccC
Q 001367 611 Q----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1091)
Q Consensus 611 ~----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 685 (1091)
. ++.++.. ...|..+.|..++ +.+.+.+..++..+|+++.+.....+....-..... . ...+.
T Consensus 199 ~EeDaL~~viN~---~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~-r----~~~~~---- 266 (376)
T KOG1188|consen 199 NEEDALLHVINH---GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL-R----KEDNC---- 266 (376)
T ss_pred cchhhHHHhhcc---cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH-H----hhhhh----
Confidence 2 2233322 2358889998877 468888999999999999886444333221000000 0 00000
Q ss_pred CcccCCCCCCCCCccccccc-ccccccccccccCCc-ccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeec
Q 001367 686 GSVSNEDPKEDVKPEISVEA-ENKSEVEKPLFARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 762 (1091)
Q Consensus 686 g~~~~~~~s~~~~~l~s~~~-d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~ 762 (1091)
..+.+.....++...+.++. -+...++-+....+. ..........+|..-|+++.|...+..+.++++||.+.+|..
T Consensus 267 dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 267 DYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 00111111222333333333 455555554321111 122223333457778889999988999999999999999985
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=9.1e-15 Score=145.66 Aligned_cols=241 Identities=11% Similarity=0.175 Sum_probs=183.5
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC--CeEEEEeccCccee
Q 001367 801 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD--STILIYNARSSEVI 878 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d--g~i~iwd~~~~~~~ 878 (1091)
...+..+.|..|...|..|+...-++|..+..............|..+-|+. .++|..+.+ ..++++++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456677788899999999876678888776554333333445677778876 366666554 36999999988887
Q ss_pred eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-E--ec
Q 001367 879 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE 955 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~--~d 955 (1091)
+.+. ...+|.++.+.. +.|+.+=.+. |+|||+++- +.+.+.....+....+.++++++.+.+||. + ..
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~M-----klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDM-----KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccc-----eeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7766 456799999864 4566555544 999999984 355555444332335777777778889998 3 56
Q ss_pred CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCc-EEEEeCCCCceEEEeecccccCCCCcccccceeE
Q 001367 956 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1034 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1034 (1091)
|.|.+||+.+.+.+..+ ..|.+.+.+++|++||.+|||+++.|+ |||+.+++|+.+..|+.... + +....
T Consensus 153 GdV~l~d~~nl~~v~~I-~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~IyS 223 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTI-NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIYS 223 (391)
T ss_pred ceEEEEEcccceeeeEE-EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEEE
Confidence 89999999998888774 589999999999999999999999997 89999999999999985443 2 22346
Q ss_pred EEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1035 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1035 ~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
++|+| |+++|++.+..++||+|.+....
T Consensus 224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 78999 58999999999999999997654
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=3.8e-14 Score=156.15 Aligned_cols=275 Identities=14% Similarity=0.195 Sum_probs=178.3
Q ss_pred eEEEEEcCCCcEEEEEcCC-CCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE-CCCEEEEEEe
Q 001367 348 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 425 (1091)
Q Consensus 348 ~llasg~~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~ 425 (1091)
++.++...++.|.+|++.+ |+...... + .+......++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3455557789999999964 43221111 2 1335677899999999987764 5778999999
Q ss_pred eCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCCcEEEEeCCC-Cc---eeEEecCCCcceEEEeecccCCce
Q 001367 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH 500 (1091)
Q Consensus 426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~ 500 (1091)
.....+...... ...+....++|+|+++ ++++++ .++.|.+|++.+ +. .+..+.+ ......++++ ++++
T Consensus 65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~--p~g~ 138 (330)
T PRK11028 65 ADDGALTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANID--PDNR 138 (330)
T ss_pred CCCCceEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeC--CCCC
Confidence 732222221122 2233567899999999 455444 588999999874 32 2233322 2334556674 4666
Q ss_pred EE-EEEecCCeEEEEecCCCCceee-----e-cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC--ce--eeE
Q 001367 501 FI-FSISVDGKIKAWLYDSLGARVD-----Y-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR 569 (1091)
Q Consensus 501 ~l-~s~~~dg~i~iwd~~~~~~~~~-----~-~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~ 569 (1091)
++ ++...++.|.+||+++...... . .........++|+|+|++++++.. .++.|.+|++.. ++ .+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 66 4555679999999987432211 1 112344668999999999988753 366799999873 32 333
Q ss_pred EEecccc---cccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe----eEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 570 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 570 ~~~~~~~---~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
.+..... +......+.++|++++++++. .++.|.+|+++... .+...... .....+.++|+|++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3332110 112234688999999999975 47899999985432 23333322 2356899999999999887
Q ss_pred C-CCeEEEEECC
Q 001367 642 N-ENRIKILETP 652 (1091)
Q Consensus 642 ~-dg~i~iwd~~ 652 (1091)
. +++|.+|++.
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8899999875
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.4e-15 Score=149.54 Aligned_cols=275 Identities=14% Similarity=0.163 Sum_probs=191.4
Q ss_pred EEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC--CCCEEEEEECCCEEEEEEee
Q 001367 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH 426 (1091)
Q Consensus 349 llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~d~~i~iwd~~ 426 (1091)
.+|++-..|+|++||..+|+.+.. +++|...+..++|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 567777889999999999988865 778888888999987 46788999999999999999
Q ss_pred CCcccceeEEEeccc-cCeeEEEEcCCCCceEEEEee----CCCcEEEEeCCCCce-eEEe-cCCCcceEEEeecccCCc
Q 001367 427 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI 499 (1091)
Q Consensus 427 ~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~ 499 (1091)
+....... ...+|. .+..+++..-.++ .+++|. .|-.|.+||++..+. +..+ ..|...|++++|+|+. .
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C
Confidence 87654433 344565 4666666665555 566664 367899999998766 5444 6799999999999874 4
Q ss_pred eEEEEEecCCeEEEEecCCCCce---eeecCCCCcEEEEEEcCCC-CEEEEEecCCCCceEEEEEecCCceeeEEEeccc
Q 001367 500 HFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1091)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1091)
.+|++|+.||.|.++|+...... .....+...|.++.|..++ +.+.+.+- .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 79999999999999998765332 2333456679999999988 33444443 4458999998887654443321
Q ss_pred cc----------ccceEEEEEcCCCCEEEEE-eCCCeEEEEECC---CCe---eEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 576 LQ----------HNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN---KVQ---LLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 576 ~~----------~~~v~~v~~~~~~~~l~~~-s~dg~i~iwd~~---~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
.. ..-|.+. ...+....+.+ +.-++..++-+. ++. .+..+.+ ++...|..+.|...+..+.
T Consensus 255 ~~~~d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLY 332 (376)
T ss_pred chhhhHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceee
Confidence 00 0112211 12233444443 335555555433 333 2333333 2334578889999999999
Q ss_pred EEECCCeEEEEECC
Q 001367 639 VIANENRIKILETP 652 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~ 652 (1091)
+|+.||.+.+|..+
T Consensus 333 TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVE 346 (376)
T ss_pred ccCCCceEEEEecC
Confidence 99999999999863
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=7.5e-15 Score=164.26 Aligned_cols=302 Identities=18% Similarity=0.203 Sum_probs=207.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-CCCCceEEEcc--CCCEEEEEECCCeEEEEECCCCCe
Q 001367 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-LPENPRICFNK--NGTLLAVIANENRIKILETPESNS 656 (1091)
Q Consensus 580 ~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1091)
....+.|+|-...++++.+.-.|++||.+.++.+..+..+.. ...|..+.+-. |..++.+++.||.|+||+-.....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 456788999999999999889999999999999888765432 23466776654 556788888899999987432100
Q ss_pred ecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccE
Q 001367 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 736 (1091)
Q Consensus 657 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i 736 (1091)
+...++++.. .+
T Consensus 1146 ---------------------------------------~~~eLVTaw~-----------------------------~L 1157 (1387)
T KOG1517|consen 1146 ---------------------------------------KKPELVTAWS-----------------------------SL 1157 (1387)
T ss_pred ---------------------------------------CCceeEEeec-----------------------------cc
Confidence 0001111100 00
Q ss_pred EEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC-CCCE
Q 001367 737 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAY 815 (1091)
Q Consensus 737 ~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~ 815 (1091)
.+. +.+....| .+. .|-. .|.+
T Consensus 1158 -------s~~-~~~~r~~~--~v~-----------------------------------------------dWqQ~~G~L 1180 (1387)
T KOG1517|consen 1158 -------SDQ-LPGARGTG--LVV-----------------------------------------------DWQQQSGHL 1180 (1387)
T ss_pred -------ccc-CccCCCCC--eee-----------------------------------------------ehhhhCCeE
Confidence 000 00001111 111 2222 3444
Q ss_pred EEEEeCCeEEEEEccCceeEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc---ceeeeeccccCC--eE
Q 001367 816 LFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR--VT 889 (1091)
Q Consensus 816 la~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~---~~~~~l~~h~~~--V~ 889 (1091)
+++|.-..|+|||.........+.. ....++++.-+...|..+++|..||.|++||.+.. ..+...+.|++. |.
T Consensus 1181 l~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv 1260 (1387)
T KOG1517|consen 1181 LVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIV 1260 (1387)
T ss_pred EecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccce
Confidence 4454457899999988877776653 44567887766657899999999999999998764 356778889987 99
Q ss_pred EEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcce
Q 001367 890 GLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 968 (1091)
Q Consensus 890 ~l~~spdg~-~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~ 968 (1091)
.+.+-+.|- .|++|+.||.|++||+....... ......+..+....+++..+++...+|+|+.+.|.||++. |+.
T Consensus 1261 ~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~---~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~ 1336 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET---FLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQ 1336 (1387)
T ss_pred eEEeecCCCcceeeeccCCeEEEEecccCcccc---cceeeeccccCccceeeeeccCCCeeeecCcceEEEEecC-hhh
Confidence 999988764 49999999999999998843221 1111122211124889999999999999877999999986 443
Q ss_pred eeee------ecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCc
Q 001367 969 LKQW------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 969 ~~~~------~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
+..+ .....+.+.+++|.|.--++|+|+.|.+|.||..+...
T Consensus 1337 l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 3322 22235678999999999999999999999999877653
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=5.5e-16 Score=157.45 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=164.3
Q ss_pred eEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeecc
Q 001367 805 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 883 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~ 883 (1091)
.+++|+++|..+++++ ||++|+|+..+...+.....|...|.++.||| |+++|++-+.| ..+||+.++|..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 89999999888888888888999999999999 99999999999 899999999977766653
Q ss_pred --ccCCeEEEEECCCC-----CEEEEEeCCCcEEEEEcCCCceeee-eeeeccCCCcCCCCCceEEEEcCCCCEEEE-Ee
Q 001367 884 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 954 (1091)
Q Consensus 884 --h~~~V~~l~~spdg-----~~las~s~Dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~ 954 (1091)
.......+.|+.|+ ..+++...-+.|+.|++..+..... +..+....+. .|++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~----siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK----SISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC----cceeEEEcCCCcEEEEecc
Confidence 23356678898887 3344455567788888876543111 1222222332 5999999999999999 58
Q ss_pred cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 955 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 955 d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
||.|.|++..+.+++.-....|..-|+.+.|+||.+++++.+.|....|..+.-.
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 9999999999999999888899999999999999999999999999999887653
No 202
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=1.1e-14 Score=139.78 Aligned_cols=242 Identities=14% Similarity=0.150 Sum_probs=175.2
Q ss_pred CCCCCeeEEEecCCCC----EEEEEeCCeEEEEEccCc--eeE--EEe-----cCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001367 799 NSQEAVPCFALSKNDA----YLFSASGGVISLYIVMTF--KTI--LTI-----MPPSPTATSLAFNPHDNNVIAIGMDDS 865 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~----~la~~~dg~i~iwd~~~~--~~~--~~~-----~~~~~~i~~l~~s~~~~~~la~g~~dg 865 (1091)
.|..+++.+.|.|+.. -+...++..+|+|.+... +.. ..+ ..+..++++..|..-+.++|.+.+-|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 4889999999999874 233345678999998732 211 111 124568899999887889999999999
Q ss_pred eEEEEeccCcc---eeeeeccccCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEE
Q 001367 866 TILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 941 (1091)
Q Consensus 866 ~i~iwd~~~~~---~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 941 (1091)
+..|||++++. ...++-+|..+|..++|+.++ +.+||+|.||.++++|+..-+... .....+..+ .+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST-IIYE~p~~~----~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST-IIYEDPSPS----TPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce-EEecCCCCC----Ccceee
Confidence 99999999873 357788999999999999865 678999999999999998744221 122222222 358889
Q ss_pred EEcCC-CCEEEE-E-ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCC-CEEEEEEcCCcEEEEeCCCCceEEEeec
Q 001367 942 QFHKD-QTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 942 ~fs~d-g~~la~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg-~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 1017 (1091)
+|++. -+++|+ + ....|.|.|++........+.+|.+.|..++|.|.. ..|+|++.|..+.+||+.+.-......+
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 99874 567777 4 446799999997766655678999999999999964 6899999999999999986533111222
Q ss_pred ccccCCCCcccccceeEEEeCCCCCCeEEEEec
Q 001367 1018 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1050 (1091)
Q Consensus 1018 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~ 1050 (1091)
...... +.+|. -+.|+|..+..++.+..
T Consensus 329 ilay~a---~~EVN--qi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 329 ILAYTA---GGEVN--QIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhhhhc---cceee--eeeecccCCCEEEEEec
Confidence 111111 33455 45677655677777653
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.1e-14 Score=165.08 Aligned_cols=235 Identities=13% Similarity=0.131 Sum_probs=161.8
Q ss_pred CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC---CEEEEEEeeCCcccc
Q 001367 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR 432 (1091)
Q Consensus 356 dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~ 432 (1091)
+..|.+||....... . +..|...+.+++|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~-~-------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF-I-------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce-E-------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998655422 1 55688899999999999999988644 479999998875322
Q ss_pred eeEEEeccccCeeEEEEcCCCCceEEEE-eeCCCcEEEE--eCCCCceeEEecCCCcceEEEeecccCCceEEEEEe-cC
Q 001367 433 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD 508 (1091)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~~~l~s-~~~d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d 508 (1091)
+..+.+| ...++|+|||+ .|+. .+.+|.+.|| |+.++. ...+..+...+....|+ +||..|+..+ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWS--PDGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEEC--CCCCEEEEEECCC
Confidence 2223333 44789999999 4554 4567765555 666655 45566677777778885 4666666554 57
Q ss_pred CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 509 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
|...+|+++..........+.. ....|+|||++++..+. + .+.+||+.+++........ ....+.|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~----~-~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP 381 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING----D-NVVKQDLTSGSTEVLSSTF-----LDESPSISP 381 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC----C-CEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence 8888888765433222222222 45789999999988764 2 3777999888754333221 234578999
Q ss_pred CCCEEEEEeCCCeEEEEEC--CCCeeEEEEeCCCCCCCCceEEEccC
Q 001367 589 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 589 ~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
+|++++.++.++.+.+|.+ .+|+....+..+.+ .+...+|+|-
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 9999999999998888875 35777777765443 5778889874
No 204
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.1e-16 Score=172.55 Aligned_cols=342 Identities=18% Similarity=0.210 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCCCCCcccCCCCCCCCCCCCCCCCCCceeecCCCCCCcccccccc
Q 001367 171 RLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVAL 250 (1091)
Q Consensus 171 rL~~Ll~qa~~~q~~~~~~~~~~~~~~sl~~dh~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1091)
-|..|+.|++++|+.+|++|.++++++|||.+|+|++ |.+..+.+-++..+. ...+..
T Consensus 1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPE---------------pk~~~~ap~N~t~Rl----~~rel~--- 1071 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPE---------------PKRLLEAPLNMTGRL----GTRELQ--- 1071 (1516)
T ss_pred cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCC---------------hHHHhhcchhhhhcc----cchhhc---
Confidence 3999999999999999999999999999999999998 222222211111111 000000
Q ss_pred cCCCCCCccccccCCCCCCccccCccccccccCCCcccccCcccCCcCCCCCCcchhhhcccccCCcccCCCchheeeec
Q 001367 251 SLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTL 330 (1091)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~~~~l 330 (1091)
. +-.-.|++ -...+.+|+++ ...+++
T Consensus 1072 ~-------------------------------------~y~gV~g~-------~~dr~~IFSRF----------r~w~~f 1097 (1516)
T KOG1832|consen 1072 S-------------------------------------FYSGVHGN-------RRDRQFIFSRF----------RSWRSF 1097 (1516)
T ss_pred C-------------------------------------cccccccC-------cccchhhHhhc----------ccchhh
Confidence 0 00000110 00011112221 223567
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 410 (1091)
+.|+...+|++||.+.+ .|++|+..|.|+++++.+|..... ..+|+++|+.+.=|.||..
T Consensus 1098 rd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred hccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcce
Confidence 88999999999999998 569999999999999999988765 6679999999999999998
Q ss_pred EEEEECCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe-cC---C
Q 001367 411 LGVAYSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG---H 484 (1091)
Q Consensus 411 las~~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~---~ 484 (1091)
+.+.+... ...+|+..+- ....+.+. .-.++.|+...++ .++ |..-..+.+||+.++..+.++ .+ .
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r~~-gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-RAL-GTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred eeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-HHh-cccccceEEEecccCcHHHHhcCcchhh
Confidence 88765433 5789998752 22222232 3457888877553 233 333346889999999887763 22 1
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
...-+...|+| +..+++ .|| .+||++..+.+..+..-... ..-.|+|.|..++..+ .|||+++
T Consensus 1230 ~y~~n~a~FsP--~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS---------EIwD~RT 1292 (1516)
T KOG1832|consen 1230 SYSNNLAHFSP--CDTLIL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS---------EIWDMRT 1292 (1516)
T ss_pred hhhccccccCC--CcceEe---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec---------hhhhhHH
Confidence 12224455644 333443 233 46999887766655543321 2335999999998864 5899999
Q ss_pred ceeeEEEecccccccceEEEEEcCCCCEEEEEe--CC---------------CeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DD---------------HVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s--~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
.+.++...... -..+.|+..|+.+++.- .| ...+-+|......+.++..... +..
T Consensus 1293 F~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~---~~D 1364 (1516)
T KOG1832|consen 1293 FKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRC---LLD 1364 (1516)
T ss_pred HHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccc---hhh
Confidence 88877665533 45678888887766542 00 1244555556666666655432 556
Q ss_pred EEEccCCCEEEEEE
Q 001367 628 ICFNKNGTLLAVIA 641 (1091)
Q Consensus 628 v~~s~~~~~l~~~~ 641 (1091)
++-+|...++++..
T Consensus 1365 lct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1365 LCTEPTDSFLGVIE 1378 (1516)
T ss_pred hhcCCccceEEEEe
Confidence 66666666665543
No 205
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=2.5e-14 Score=159.38 Aligned_cols=250 Identities=17% Similarity=0.166 Sum_probs=181.6
Q ss_pred CCccEEEEEECC-CCCEEEEEECCCEEEEEEeeCCccc--cee-EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 395 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 395 h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~--~~~-~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
-...|+|++|+| +..+||.|..+|.|.+||+..+... ..+ .....|..+++.+.|..+-...-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 457999999999 6778888899999999999987652 111 122368899999999765442248999999999999
Q ss_pred eCCCCce------eEEec------CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc--------eeeecCCCC
Q 001367 471 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL 530 (1091)
Q Consensus 471 d~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~ 530 (1091)
+++.-.. ..... .....++++.|.+. +-..++.|+.+|.|.--+...... ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 12345778888765 446799999999988733322211 224566788
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCceEEEEEecC-CceeeEEEecccccccceEEEEEcCCCCEE-EEEeCCCeEEEEECC
Q 001367 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN 608 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~s~dg~i~iwd~~ 608 (1091)
+|.++.++|-+..++..+. +..+++|... ...++..+..+. ..+.+++|||-...+ +++..||.+.+||+.
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999999998876665543 7789999987 556666666655 669999999987554 557789999999987
Q ss_pred CCe--eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 609 KVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 609 ~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
... ++...... ....+.+.|+++|+.|++|...|++.+|++...
T Consensus 473 ~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 473 QDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 543 33333333 335678888999999999999999999998744
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=2.9e-13 Score=147.58 Aligned_cols=318 Identities=10% Similarity=0.121 Sum_probs=201.2
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
++.|.+.|..+.+.+..+.... ..-..+.|+||++++++++.||.|.++|+.+++.+.++..... ...+++++|
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---~~~i~~s~D 88 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---PRGIAVSPD 88 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---EEEEEE--T
T ss_pred CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---cceEEEcCC
Confidence 6779999999999999988644 3344578999999999999999999999999999999986543 588999999
Q ss_pred CCEEEEEE-CCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccc
Q 001367 634 GTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 634 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
|++++++. ..+.+.++|..+.+.+..+.......
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~--------------------------------------------- 123 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV--------------------------------------------- 123 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---------------------------------------------
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccc---------------------------------------------
Confidence 99998775 58999999999887776654221100
Q ss_pred cccccCCcccceeecCCccccccEEEEEEecCCCeEEEee-cCceEEEeecCCcccccccceeeccCCccccCCCCCcee
Q 001367 713 KPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 791 (1091)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1091)
.....++.++..++....++..- ..+.+.+-|+..... +.
T Consensus 124 -----------------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~----------------------~~ 164 (369)
T PF02239_consen 124 -----------------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN----------------------LK 164 (369)
T ss_dssp -----------------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC----------------------EE
T ss_pred -----------------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc----------------------cc
Confidence 00234677788888888555544 447777666543211 11
Q ss_pred eecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecC----CCCCeEEEEEcCC---------CCc
Q 001367 792 VNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----PSPTATSLAFNPH---------DNN 856 (1091)
Q Consensus 792 ~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~---------~~~ 856 (1091)
...+ ..........|+|++++++++. .+.|.++|.++++....+.. |......+ .+|. .+.
T Consensus 165 ~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 165 VTTI---KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGY 240 (369)
T ss_dssp EEEE---E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSS
T ss_pred eeee---cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccc
Confidence 1111 1234456789999999988876 58999999999988766532 22233222 1221 122
Q ss_pred EEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEE----eCCCcEEEEEcCCCceeeeeeeeccCCCc
Q 001367 857 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS----GGDAQIFVWDVDGWGIQTCRSLQTPDGVM 932 (1091)
Q Consensus 857 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~----s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 932 (1091)
..++.-....+.+|+..+.+.+.++....++ .-+..+||++++... ...++|.++|.++.+... .+....+
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~-- 315 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPG-- 315 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT--
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCC--
Confidence 2222222335667888888999999877666 778889999999987 445899999999854221 2211111
Q ss_pred CCCCCceEEEEcCCCCEEEEE---ecCeEEEEEcCCcceeeeee
Q 001367 933 TLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWF 973 (1091)
Q Consensus 933 ~~~~~i~~l~fs~dg~~la~~---~d~~i~vwd~~~~~~~~~~~ 973 (1091)
..+..+.|++||+++-.+ .++.|.+||..+.+.+..+.
T Consensus 316 ---~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 316 ---KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ---CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 137899999999987763 34489999999999887754
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=3e-15 Score=152.15 Aligned_cols=197 Identities=21% Similarity=0.200 Sum_probs=150.9
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001367 846 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 925 (1091)
Q Consensus 846 ~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~ 925 (1091)
..++|++ +|..|++|+.||++|+|+..+...+.....|.+.|.++.|||||++|++.+.| ..+||+..++.... .
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~ 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---R 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---h
Confidence 7899999 89999999999999999999888888888899999999999999999999999 79999999974221 1
Q ss_pred eccCCCcCCCCCceEEEEcCCC---CEE-EE-E-ecCeEEEEEcCCcce-----eeeeecCCccCEEEEEEeeCCCEEEE
Q 001367 926 QTPDGVMTLAPSETHIQFHKDQ---TRF-LL-V-HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT 994 (1091)
Q Consensus 926 ~~~~~~~~~~~~i~~l~fs~dg---~~l-a~-~-~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~v~fs~dg~~l~t 994 (1091)
..+.+.. .....+.|+.|+ .+. ++ . .-+.|+.||+..... .++... ....|++++.|+||++++.
T Consensus 223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCCcEEEE
Confidence 2222222 247788999888 333 33 2 334566666543221 112111 2457999999999999999
Q ss_pred EEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 995 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 995 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
|+.||.|.|++..+.+.+.-. ..+|...|+ .+.|+| |.+.+++.+.|.+..+..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~v-------k~aH~~~VT--~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYV-------KEAHLGFVT--GLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEee-------hhhheeeee--eEEEcC-CcCcccccccCCceeEEEEee
Confidence 999999999999988776322 234555555 678999 588999999999999999866
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=8.1e-14 Score=158.88 Aligned_cols=257 Identities=13% Similarity=0.105 Sum_probs=182.4
Q ss_pred ecCCCccEEEEEECCCC-CEEEEEECCCEEEEEEeeCC----cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCc
Q 001367 392 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 466 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~ 466 (1091)
+..|+..|..++.+++. .++++|+.||+|++|+...- ...+...++.....++.++.+.+.+. .++.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 67799999999998755 99999999999999998642 22232223333567899999999999 6888899999
Q ss_pred EEEEeCCCC--ce-----eEEecCC-CcceEEE-eecccCCceEEEEEecCCeEEEEecCCCCceee--ecCCCCcEEEE
Q 001367 467 IKVWDAVTG--SR-----TYSFEGH-GAPVYSL-CPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRM 535 (1091)
Q Consensus 467 i~iwd~~~~--~~-----~~~~~~~-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~ 535 (1091)
|++.++.-. +. .+....+ .+.+.++ ++........++.+..-+.|..||.+....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998752 11 1111212 2334433 333222223788899999999999987766554 34456689999
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCC---CCEEEEEe--CCCeEEEEECCCC
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV 610 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~s--~dg~i~iwd~~~~ 610 (1091)
+.+|-+.+++.|.. .|.+.+||++-+.++....... ..++..+..+|- ....++++ ..+.|.+|++.+|
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999976 6779999999998888776544 366777766654 34555543 5788999999999
Q ss_pred eeEEEEeCCCCC-----------------CCCceEEEccCCCEEEEEECCCeEEEEECCCCCe
Q 001367 611 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1091)
Q Consensus 611 ~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1091)
.....+...... ......++...+..+.+|+.|..|+.||......
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 777666543110 0112233444567899999999999999876533
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=2e-13 Score=148.87 Aligned_cols=330 Identities=13% Similarity=0.128 Sum_probs=199.8
Q ss_pred EEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccc
Q 001367 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580 (1091)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 580 (1091)
++++-..+|.|.+.|..+.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.+.++.... .
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~----~ 79 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG----N 79 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS----E
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC----C
Confidence 3456677899999999998888888766555556789999999999865 5679999999999998887644 5
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCC-----CCCCceEEEccCCCEEEEEEC-CCeEEEEECCC
Q 001367 581 VSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG-----LPENPRICFNKNGTLLAVIAN-ENRIKILETPE 653 (1091)
Q Consensus 581 v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~ 653 (1091)
...+++++||++++++. .++.+.++|.++.+.+..++.... .+.+..+..+|....+++.-. .+.|.+.|...
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 78899999999999865 789999999999999988865432 224567777887775555444 47787777654
Q ss_pred CCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCcccc
Q 001367 654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 733 (1091)
Q Consensus 654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 733 (1091)
...+.... + ...
T Consensus 160 ~~~~~~~~---------------------------------------------------------------i-----~~g 171 (369)
T PF02239_consen 160 PKNLKVTT---------------------------------------------------------------I-----KVG 171 (369)
T ss_dssp SSCEEEEE---------------------------------------------------------------E-----E--
T ss_pred ccccceee---------------------------------------------------------------e-----ccc
Confidence 32211000 0 011
Q ss_pred ccEEEEEEecCCCeEEEee-cCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCC
Q 001367 734 NKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 812 (1091)
Q Consensus 734 ~~i~~~~~s~dg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 812 (1091)
.......|+|++++++++. .+..+-++|....+.. .....|............|...-.--+.+..
T Consensus 172 ~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v-------------~~i~~g~~p~~~~~~~~php~~g~vw~~~~~ 238 (369)
T PF02239_consen 172 RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV-------------ALIDTGKKPHPGPGANFPHPGFGPVWATSGL 238 (369)
T ss_dssp TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE-------------EEEE-SSSBEETTEEEEEETTTEEEEEEEBS
T ss_pred ccccccccCcccceeeecccccceeEEEeeccceEE-------------EEeeccccccccccccccCCCcceEEeeccc
Confidence 2344678889998876654 4567778776543320 1111111110000000001111111122223
Q ss_pred CCEEE-EEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEE----eCCCeEEEEeccCcceeeeecccc-C
Q 001367 813 DAYLF-SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVISKLEGHS-K 886 (1091)
Q Consensus 813 g~~la-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g----~~dg~i~iwd~~~~~~~~~l~~h~-~ 886 (1091)
+...+ ..+.+.+.+||..+++.++++...... .-+..+| +++++.+. ...++|.++|..+.+.+.++.... .
T Consensus 239 ~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~ 316 (369)
T PF02239_consen 239 GYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK 316 (369)
T ss_dssp SSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-
T ss_pred cceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC
Confidence 33332 223456678999999999999877666 7788899 88888887 455799999999988777775333 3
Q ss_pred CeEEEEECCCCCEEEEEeCC--CcEEEEEcCCCceee
Q 001367 887 RVTGLVFSDALNILVSSGGD--AQIFVWDVDGWGIQT 921 (1091)
Q Consensus 887 ~V~~l~~spdg~~las~s~D--g~i~vwd~~~~~~~~ 921 (1091)
.+..+.|++||+++..+..+ +.|.++|..+.+...
T Consensus 317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 317 RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp -EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred cEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 58999999999987655443 369999999976544
No 210
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=4.5e-14 Score=147.06 Aligned_cols=169 Identities=11% Similarity=0.154 Sum_probs=126.4
Q ss_pred cCCCCEEEEEe-CCeEEEEEccCceeEEEec----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC----------
Q 001367 810 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 874 (1091)
Q Consensus 810 s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~---------- 874 (1091)
.|.+--+.++- -|.|.+.|....+..+.+. -....++++.|-|.+...++++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45666666665 5889888876533222222 13368999999996667777788899999997531
Q ss_pred ----cc--------------eeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCC
Q 001367 875 ----SE--------------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 936 (1091)
Q Consensus 875 ----~~--------------~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 936 (1091)
+. ++..+.--.+.|...+|||||++||+.|.||.++|+|+.+.+ .+-..+... +
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence 11 122222234578899999999999999999999999999843 333333322 3
Q ss_pred CceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEee
Q 001367 937 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC 987 (1091)
Q Consensus 937 ~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~ 987 (1091)
...|++|||||+||++ |.|.-|.||.+...+.+.. -.+|...|..|+|.|
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence 7899999999999999 6888999999998888776 568999999999997
No 211
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.8e-14 Score=157.97 Aligned_cols=298 Identities=15% Similarity=0.203 Sum_probs=207.9
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC--CC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 408 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg 408 (1091)
.+.......+.|+|-.. .++++...-.|+|||.+.++.+..+ |.+ ......|+.+.+-. |.
T Consensus 1061 ~~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F-----~n~-----------~~~~t~Vs~l~liNe~D~ 1123 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGF-----DNG-----------AFPDTRVSDLELINEQDD 1123 (1387)
T ss_pred hcCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccc-----cCC-----------CCCCCccceeeeecccch
Confidence 34455677889999887 5577776688999999999877531 111 11346788888876 66
Q ss_pred CEEEEEECCCEEEEEEee-CC-ccccee---EEEeccc----cCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 409 SLLGVAYSKHIVQLYAYH-GG-SDARQQ---LEIDAHV----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~-~~-~~~~~~---~~~~~h~----~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
.+|++|+.||.|+||+-- ++ +..+.. ..+.++. +.=.-+.|-.... +|+++|.-..|+|||.....+.+
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEe
Confidence 799999999999999643 22 111111 1122211 1113456766666 56667768899999999888877
Q ss_pred EecC-CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc---eeeecCCCCc--EEEEEEcCCCCE-EEEEecCCC
Q 001367 480 SFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKE 552 (1091)
Q Consensus 480 ~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~--i~~~~~s~d~~~-l~~~~~~~~ 552 (1091)
.+.. ....|+++.-... .|..+++|..||.|++||.+.... ...++.|... |..+.+-+.|-. |++++.
T Consensus 1202 diP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~--- 1277 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ--- 1277 (1387)
T ss_pred ecccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc---
Confidence 7643 4455777765433 368999999999999999876543 4456667665 999999887755 888876
Q ss_pred CceEEEEEecCCceeeEEEe--cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-----CCCCCC
Q 001367 553 GESFLVEWNESEGAIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPEN 625 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v 625 (1091)
+|.|++||++.......+. .+..-++..+++..++....+++|+. +.|.||++...+ +..+..+ .....+
T Consensus 1278 -~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1278 -DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred -CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCc
Confidence 5569999998752222221 22111235899999999999999988 999999986533 3332221 123467
Q ss_pred ceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 626 PRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
.+++|+|..-++|+|+.|..|.||.....
T Consensus 1355 scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ceeeecchhHhhhhccCCceEEEeecCCc
Confidence 89999999999999999999999987654
No 212
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.63 E-value=6.1e-11 Score=121.97 Aligned_cols=420 Identities=11% Similarity=0.093 Sum_probs=235.2
Q ss_pred EcCC--CceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE-----
Q 001367 342 FHPV--QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA----- 414 (1091)
Q Consensus 342 fspd--g~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~----- 414 (1091)
..|| |..++.++..| +..+++.+|+..+ +..|-+-|+...|+|||+.+|..
T Consensus 44 l~PDI~GD~IiFt~~Dd--lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~rv~~~ 101 (668)
T COG4946 44 LNPDIYGDRIIFTCCDD--LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFSRVMLG 101 (668)
T ss_pred cCCcccCcEEEEEechH--HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEEEEEec
Confidence 3554 55677777654 3444556676554 55688889999999999999873
Q ss_pred --ECCCEEEEEEeeCCcccceeEEEeccccCee-EEEEcCCCCceEEEEeeCCCcEEEE----eCCC-CceeEEecCCCc
Q 001367 415 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCGDDKTIKVW----DAVT-GSRTYSFEGHGA 486 (1091)
Q Consensus 415 --~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~~~l~s~~~d~~i~iw----d~~~-~~~~~~~~~~~~ 486 (1091)
.....+.+.+.+.|+..+. +.-| .+.+ -+-|.|||+ ++++...-.-..-| .+.. |.....+ .-+
T Consensus 102 ss~~taDly~v~~e~Ge~kRi--TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--nlG 173 (668)
T COG4946 102 SSLQTADLYVVPSEDGEAKRI--TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWTELYKVNVDGIKTEPL--NLG 173 (668)
T ss_pred CCCccccEEEEeCCCCcEEEE--EEec--cccceeeccCCCCC--EEEEeccCCCcccceeeeEEccCCceeeec--cCC
Confidence 1234577888888875442 2223 2333 346999998 67666543222222 2211 1111111 122
Q ss_pred ceEEEeecccCCceEEEEEecC-----------C-eEEEEecCCCC-ceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 487 PVYSLCPHAKENIHFIFSISVD-----------G-KIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~d-----------g-~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
+.+.+.+ .|| .++.|-.. | .=++|--..+. ....+..-.+.|.+-..-.+.-++++ +-+|
T Consensus 174 pathiv~---~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFls---D~eG 246 (668)
T COG4946 174 PATHIVI---KDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLS---DHEG 246 (668)
T ss_pred ceeeEEE---eCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEe---cccC
Confidence 3333332 233 22222111 0 01233222222 11111111222222222222222222 2345
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe---CCCCC---CCCc-
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGGGL---PENP- 626 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~~~---~~v~- 626 (1091)
-+.++--|+....+.+....+ .-.+=..+.||+.++-. ..|.|++||.++.++...-- ..... ..+.
T Consensus 247 ~GnlYSvdldGkDlrrHTnFt-----dYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~p 320 (668)
T COG4946 247 VGNLYSVDLDGKDLRRHTNFT-----DYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNP 320 (668)
T ss_pred ccceEEeccCCchhhhcCCch-----hccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCH
Confidence 666777676544332221111 12222346688877653 45789999988765432211 11000 0011
Q ss_pred --eEE-Ecc-CCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccc
Q 001367 627 --RIC-FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEIS 702 (1091)
Q Consensus 627 --~v~-~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s 702 (1091)
-+. |++ +|.+++..+. |...+.+...+..++
T Consensus 321 skyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-------------------------------------------- 355 (668)
T COG4946 321 SKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-------------------------------------------- 355 (668)
T ss_pred HHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEE--------------------------------------------
Confidence 111 333 5677777766 455554433221111
Q ss_pred cccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCc-eEEEeecCCcccccccceeeccCCcc
Q 001367 703 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRL 781 (1091)
Q Consensus 703 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~ 781 (1091)
.++...|.-..+..+++.++.+..|| .+-+++......
T Consensus 356 ---------------------------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-------------- 394 (668)
T COG4946 356 ---------------------------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-------------- 394 (668)
T ss_pred ---------------------------cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE--------------
Confidence 11344566666777777788888887 777877554321
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeC-CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEE
Q 001367 782 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 860 (1091)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~ 860 (1091)
... .+.-+.|.++.+++||++++++.+ ..+.+.|+.+++....-+...+-|+.++|+| +++++|.
T Consensus 395 ---------kr~----e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAY 460 (668)
T COG4946 395 ---------KRI----EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAY 460 (668)
T ss_pred ---------EEe----eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEE
Confidence 111 025578999999999999999986 7899999999987766666778899999999 9999999
Q ss_pred EeCCC----eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeC
Q 001367 861 GMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 905 (1091)
Q Consensus 861 g~~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~ 905 (1091)
+--+| .|++||+.+++....-. ..+.=.+-+|.||+++|.--+.
T Consensus 461 afP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 461 AFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred ecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 88776 79999999887654332 3333456789999999876553
No 213
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.6e-15 Score=152.59 Aligned_cols=296 Identities=14% Similarity=0.142 Sum_probs=223.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
|.+|.+.|..+.|+..|..|++|+.|..|.+||+..+..... -..||...|....|-|......+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 778999999999999999999999999999999998865432 234899999999998865444799999999999876
Q ss_pred CC-CCce--eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec---CCCC---cEEEEEEcCCCC
Q 001367 472 AV-TGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGL---GCTRMAYSANGR 542 (1091)
Q Consensus 472 ~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~---~i~~~~~s~d~~ 542 (1091)
+. ++.+ ...+..|.++|..++..|. ....|.+++.|+.+.-.|++.......+. .+.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 54 3333 3456679999999988654 33579999999999999988765443322 1222 467888889776
Q ss_pred -EEEEEecCCCCceEEEEEecCCcee------eEEEecccc---cccceEEEEEcCCCCEEEEEeCCCeEEEEECCC--C
Q 001367 543 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V 610 (1091)
Q Consensus 543 -~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~--~ 610 (1091)
.+++++. +.++++||.+.-.. +..+..+.. ..-.|++++|+.++.-++++..|-.|+++...- |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5555554 66789998764322 223322221 124689999998888888888899999995432 2
Q ss_pred ----------eeEEE-EeCCCCCCCCceEE-EccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccc
Q 001367 611 ----------QLLTT-IDAGGGLPENPRIC-FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1091)
Q Consensus 611 ----------~~~~~-~~~~~~~~~v~~v~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1091)
..+.. +.+|.....|..+- |-|...++++|++-|.|.||+-.+++.++.+.+...-|+|+.-
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEp------ 444 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEP------ 444 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCC------
Confidence 22222 56666655677776 4678899999999999999999999999999887777777765
Q ss_pred ccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 679 TGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 679 ~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
.|.-..|++.+-|..|+||...
T Consensus 445 ---------------HP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 445 ---------------HPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred ---------------CCCCchhhccCCccceeeecCC
Confidence 5666788999999999999863
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=7.1e-14 Score=159.35 Aligned_cols=274 Identities=15% Similarity=0.179 Sum_probs=189.3
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
...+..|..|+..|..++.+++...++++||.||+|++||...-..-. ..++ ...++..-+..+.++.
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~vt 1105 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEKVT 1105 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEEEE
Confidence 467889999999999999988774488999999999999986422110 0000 1111333568999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCC--cccc--eeEEEe--ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGG--SDAR--QQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~--~~~~--~~~~~~--~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1091)
+.+.+..+|+++.||.|++.++..- +... +..... ....-|..-+|....+...++.+..-+.|..||+.+...
T Consensus 1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 9999999999999999999998762 1110 000111 112234444565554444788888889999999988777
Q ss_pred eEEec--CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC-CCcEEEEEEcC---CCCEEEEEecCC
Q 001367 478 TYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSA---NGRRLFSCGTSK 551 (1091)
Q Consensus 478 ~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~---d~~~l~~~~~~~ 551 (1091)
+++++ ...+.|++++.++ .+.+++.|+..|.+.+||++-......+..+ ..+++.+...| .....++++..
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~- 1262 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS- 1262 (1431)
T ss_pred HHhhhcCccccceeEEEecC--CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc-
Confidence 66554 3457799999854 5679999999999999999988777765543 34666666555 44566666542
Q ss_pred CCceEEEEEecCCceeeEEEeccc----------------ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeE
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQ----------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~----------------~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 613 (1091)
+.+.|.+|++.+|.....+.... .+.-....+++...+..+++|+.|..|+.||....+..
T Consensus 1263 -~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1263 -SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred -CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 46679999999987766654431 00011223344445678899999999999998775544
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.5e-12 Score=139.81 Aligned_cols=508 Identities=12% Similarity=0.144 Sum_probs=304.1
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcc------------cceeEEEeccccCeeEEEEcCCCCceEEEEee
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~------------~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~ 462 (1091)
......|++|+....|+|+|+.||.++|-.+.+... +....++.||.+.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 557889999999999999999999999998865322 111235789999999999998887 689999
Q ss_pred CCCcEEEEeCCCCceeEEec--CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCC
Q 001367 463 DDKTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 540 (1091)
Q Consensus 463 ~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d 540 (1091)
.+|.|.||-+-.|.-...+. .....|.+++| +.+|..+.....||.|.+=.++... +.--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence 99999999988776544332 24456778887 5678888888888888765544321 1111122223456889999
Q ss_pred CCEEEEEecCCCCceEEEEEecCCce-------eeEEEec-ccccccceEEEEEc--------CCCCEEEEEeCCCeEEE
Q 001367 541 GRRLFSCGTSKEGESFLVEWNESEGA-------IKRTYQG-LQLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI 604 (1091)
Q Consensus 541 ~~~l~~~~~~~~~~~~i~iwd~~~~~-------~~~~~~~-~~~~~~~v~~v~~~--------~~~~~l~~~s~dg~i~i 604 (1091)
.+.++.+-. ++.+.++|.+..- +.....+ .......|..+.|. |+...++++-.+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 988877655 4458888865421 1111111 11011234455553 57889999999999888
Q ss_pred EECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC---------eEEEEECCCCCeecccccccccceeeeeccc
Q 001367 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN---------RIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
-.-.+......+... -.+....|+++|..|++++.+. .|.+|. .-|..+..++....
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~---------- 309 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS---------- 309 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc----------
Confidence 765544333333322 2467889999999999998753 222221 11222233333333
Q ss_pred cccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCc
Q 001367 676 STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 755 (1091)
Q Consensus 676 ~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg 755 (1091)
.|+++.|-..|-.++ ..-|+
T Consensus 310 -----------------------------------------------------------~It~lsWEg~gLriA-~Avds 329 (1189)
T KOG2041|consen 310 -----------------------------------------------------------CITGLSWEGTGLRIA-IAVDS 329 (1189)
T ss_pred -----------------------------------------------------------eeeeeEEcCCceEEE-EEecc
Confidence 344444444333222 22233
Q ss_pred eEEEeecCCccc----------ccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeE
Q 001367 756 VHLMWRWPRNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI 824 (1091)
Q Consensus 756 ~i~vw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i 824 (1091)
.+.+=++...-. ...+.......+.+||..+.+.... .-....+++++.+.-.|+.-. ++.+
T Consensus 330 fiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~i 402 (1189)
T KOG2041|consen 330 FIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGVI 402 (1189)
T ss_pred eEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCCC
Confidence 333322211100 0011111223455677777664332 233456777777766666554 4555
Q ss_pred EEEE-ccCceeEEEec----------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce----------------
Q 001367 825 SLYI-VMTFKTILTIM----------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---------------- 877 (1091)
Q Consensus 825 ~iwd-~~~~~~~~~~~----------~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~---------------- 877 (1091)
.-++ +++...+..+. ..-..|.-.-..- ++..++.++.+ .+.+|.....+.
T Consensus 403 ~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h 480 (1189)
T KOG2041|consen 403 PEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFH 480 (1189)
T ss_pred cchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhccccccc
Confidence 4442 11211111111 0011222222222 56677777766 577886533211
Q ss_pred ----------------eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEE
Q 001367 878 ----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 941 (1091)
Q Consensus 878 ----------------~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 941 (1091)
..++.|..++|.+++.| .++|..+-..|.|.-+.+.+... .+...- ...+..+
T Consensus 481 ~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l-----~n~y~~----n~~~y~~ 549 (1189)
T KOG2041|consen 481 GDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVL-----TNSYPV----NPSIYSI 549 (1189)
T ss_pred CCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceee-----eecccc----CchheeE
Confidence 13445667788888886 47888899999999999988432 222211 1358899
Q ss_pred EEcCCCCEEEE-EecCeEEEEEcC---CcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 942 QFHKDQTRFLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 942 ~fs~dg~~la~-~~d~~i~vwd~~---~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
+.+.+...+|+ -.-|.+.+.|+. +|..+.-+.......|+.+.|..|...|++--+...++|++
T Consensus 550 ~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifr 617 (1189)
T KOG2041|consen 550 KLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFR 617 (1189)
T ss_pred eeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEec
Confidence 99999888887 456777777665 45555545555677899999998887666555555666665
No 216
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.61 E-value=8.7e-14 Score=155.05 Aligned_cols=253 Identities=17% Similarity=0.192 Sum_probs=184.5
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC--CEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG--SLLG 412 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg--~~la 412 (1091)
.+|+|++|+|....++|.|..+|.|.+||+..+..... ..-......|..+|+.+.|-.+- .-++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~ 309 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSHSEPVTAVVWLQNEHNTEFF 309 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccCCcCeEEEEEeccCCCCceE
Confidence 49999999999888999999999999999988776310 00111255699999999998754 4499
Q ss_pred EEECCCEEEEEEeeCCcccceeEEE--e-------ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe---CCCCc----
Q 001367 413 VAYSKHIVQLYAYHGGSDARQQLEI--D-------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVTGS---- 476 (1091)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~--~-------~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd---~~~~~---- 476 (1091)
+++.||.|..|+++.-........+ . .-...+++++|.+.... .++.|+.+|.|.-=+ ...+.
T Consensus 310 s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~~~~~~~ 388 (555)
T KOG1587|consen 310 SLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTPAPEVSY 388 (555)
T ss_pred EEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCcccccccc
Confidence 9999999999988653321111011 1 11236899999987766 688899999887733 22222
Q ss_pred -eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecC-CCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 477 -RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 477 -~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
.+..+..|.++|+++.++|-.. ..+++++ |-+++||.-. .......+..+...+++++|||-.-.++++. +++
T Consensus 389 ~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~---d~~ 463 (555)
T KOG1587|consen 389 KGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV---DGD 463 (555)
T ss_pred cccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE---cCC
Confidence 2335667899999999876543 2344444 9999999887 5666667777777799999999887776665 358
Q ss_pred eEEEEEecCCce--eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001367 555 SFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 555 ~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
|.+.+||+.... ++....... .....+.|++.|+.+++|...|++.+|++..
T Consensus 464 G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 464 GNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 889999987543 233322222 5677888999999999999999999999864
No 217
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.61 E-value=1.6e-11 Score=139.07 Aligned_cols=199 Identities=17% Similarity=0.181 Sum_probs=156.0
Q ss_pred CeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce-E-EEeecccCCceEEEEEecCCeEEEEecCCCC
Q 001367 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-Y-SLCPHAKENIHFIFSISVDGKIKAWLYDSLG 520 (1091)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v-~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 520 (1091)
.|....+.-+.+ .++.+..++.+.+||...+..+.......... . ++-+-.+.+.-++++|+.-+.|.+|++...+
T Consensus 89 wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 89 WIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344455566666 57777778899999988887776665332221 1 1122234455789999999999999998666
Q ss_pred ceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE-EEecccccccceEEEEEcCCCCEEEEEeCC
Q 001367 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1091)
Q Consensus 521 ~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d 599 (1091)
....+.+|.+.|.++.++.||+++++++. |..+++|++.+++... ..-+|. ..+..++|.|+ .++++++|
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~~fgHs---aRvw~~~~~~n--~i~t~ged 237 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCTGFGHS---ARVWACCFLPN--RIITVGED 237 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCccccccc---ceeEEEEeccc--eeEEeccc
Confidence 66678899999999999999999999987 6679999999988776 455666 89999999997 89999999
Q ss_pred CeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 600 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
-+.++|+.+. ..+..+..|.. ..+..++..++...+++++.|+.+++|+....
T Consensus 238 ctcrvW~~~~-~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 238 CTCRVWGVNG-TQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEEEeccc-ceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999997654 44446666544 36899999999999999999999999998754
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=2.5e-12 Score=125.90 Aligned_cols=239 Identities=14% Similarity=0.197 Sum_probs=169.0
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEecccc--CeeEEEEcCCCCceEEEEeeC-----CCcEEEE
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NVNDLAFSAPCKQISVITCGD-----DKTIKVW 470 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~s~d~~~~~l~s~~~-----d~~i~iw 470 (1091)
...+++|+.|..-+++|..+| .+||+.+--+... .-.-+.+ .+..+-| -.+.+.|+-|+. -..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 445599999999999998888 8999987522211 1111222 2333333 233323333332 2579999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecC-CCCceeeecCCC--CcEEEEEEcCCCCEEEEE
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPG--LGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~i~~~~~s~d~~~l~~~ 547 (1091)
|=...+++.++. ...+|.++.+... .|++ -..+.|.+|.+. +.+....+.... ....+++-..+...|+.-
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r~----riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRRD----RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcCC----eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 966777887775 6788999998432 3433 456789999887 455555444332 234344333344444443
Q ss_pred ecCCCCceEEEEEecCCcee--eEEEecccccccceEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeeEEEEeCCCCCCC
Q 001367 548 GTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPE 624 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~ 624 (1091)
+ -..|.|++-|+...+. ...+..|. ..|.|++.+-+|..++++|..|+ |||||..+|+.+..+........
T Consensus 155 g---~k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 155 G---FKTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD 228 (346)
T ss_pred C---CccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence 3 2367899999876654 35666776 99999999999999999999998 79999999999999987766678
Q ss_pred CceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 625 NPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
|.+++|||++.+|+++++.|+++|+.+...
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999999999999999999999999998764
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=7.3e-14 Score=158.45 Aligned_cols=228 Identities=18% Similarity=0.196 Sum_probs=149.0
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcC--CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~--dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1091)
....+.+..|...+...+|||||++++.++.. +..|.+||+.+|+...... +.+| ..+
T Consensus 193 g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~---~~~ 252 (429)
T PRK01742 193 GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH---NGA 252 (429)
T ss_pred CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc---cCc
Confidence 44456778888899999999999966444322 2469999998886432100 2233 346
Q ss_pred EEECCCCCEEEEEE-CCCEEEEE--EeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ce
Q 001367 402 VVWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SR 477 (1091)
Q Consensus 402 l~~spdg~~las~~-~d~~i~iw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~ 477 (1091)
++|||||++|++++ .+|.+.|| |+.++.. . .+..+...+...+|+|||+. +++++..++...||++... ..
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence 89999999998875 57765555 5555542 2 45567777889999999995 3334456788888876532 22
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
...+ .+.. ....| ++||++|+..+.++ +.+||+.++........ ....++.|+|||++++.++.++. ...+
T Consensus 328 ~~~l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~-~~~l 398 (429)
T PRK01742 328 ASLV-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGL-GKVL 398 (429)
T ss_pred eEEe-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCC-ceEE
Confidence 2333 3333 34455 56778888887765 45599887765432222 12356789999999999876322 2233
Q ss_pred EEEecCCceeeEEEecccccccceEEEEEcCC
Q 001367 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1091)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 589 (1091)
.+++ .+|...+.+..+. +.+...+|+|-
T Consensus 399 ~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 399 QLVS-ADGRFKARLPGSD---GQVKFPAWSPY 426 (429)
T ss_pred EEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence 3444 3566777777665 66788888874
No 220
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=2.7e-13 Score=132.55 Aligned_cols=232 Identities=15% Similarity=0.179 Sum_probs=176.1
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC-C
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-V 473 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~-~ 473 (1091)
-..+|+|.||++|+..+|++-....|.||.....+.....+++..|...|+.++|+|.+. .|++|+.|..-+||.. .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 347999999999999999999999999999999887777889999999999999999998 6999999999999998 3
Q ss_pred CCc--eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee----eecCCCCcEEEEEEcCCCCEEEEE
Q 001367 474 TGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 474 ~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
.++ +.-.+..++...+++.|+|.+ ..+++|+....|.+|-++....-. .-+.....|.++.|+|++-.|+++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 333 334556688899999997654 589999999999999887655432 233455678999999999999998
Q ss_pred ecCCCCceEEEEEec-----CC-------------ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001367 548 GTSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
+. |+..+++.. +. |+++..+.. ..+.+..+.|+|+|..|+-.+.|..+.+-|...
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~---~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS---SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc---CCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 86 444666532 11 222333332 247899999999999999999999999999876
Q ss_pred Ce-eEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001367 610 VQ-LLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1091)
Q Consensus 610 ~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1091)
.. .+....... -+..++.|-.+...++.
T Consensus 238 p~~~v~~~~~~~--lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 238 PSERVQSVATAQ--LPLLSVSWISENSVVAA 266 (361)
T ss_pred Cchhccchhhcc--CCceeeEeecCCceeec
Confidence 64 222222211 23455666554443333
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.1e-12 Score=130.26 Aligned_cols=288 Identities=16% Similarity=0.164 Sum_probs=187.7
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC-CCEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVA 414 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~ 414 (1091)
.+..++|++.-- -+|++..|-.|++||-... +... +-......|+|++|-|. ++-|++|
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~ksst-~pt~------------------Lks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSST-CPTK------------------LKSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCCC-CCce------------------ecchhhcceeEEEeccCCcceeeee
Confidence 677888888543 3588889999999997662 2211 01224568999999995 5677888
Q ss_pred ECCCEEEEEEeeCCccc-----------ceeEEEeccccCeeEEEEcCCCCceEEEEeeC-CCcEEEEeCCCCceeEEec
Q 001367 415 YSKHIVQLYAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~-----------~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~ 482 (1091)
+..| |++|........ .+...-.+| .+|++++|.+||. .+++++. |..|.|||..++..+.-..
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence 7776 999987532111 112223355 6899999999999 6777764 6689999999998775554
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
...+.+.-+.|+ +|+.+|++++-|+..++|+....-.........+.|...+|+|+|++|+..... ...++-...
T Consensus 236 ~glgg~slLkwS--Pdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKWS--PDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEEc--CCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence 455677788885 577899999999999999655443333344445589999999999988765431 222222211
Q ss_pred CC--ce-----------eeE------EEecccccccceEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeeEEE
Q 001367 563 SE--GA-----------IKR------TYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 563 ~~--~~-----------~~~------~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~ 615 (1091)
.. +. ++. ...+...-.+.+.+++|.|.|.++++.-.. +.|.+||....-.+..
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 11 10 000 111111123678899999999999986433 3366788765444433
Q ss_pred EeCC-CCCCCCceEEEcc---CCCEEEEEECCCeEEEEECC
Q 001367 616 IDAG-GGLPENPRICFNK---NGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 616 ~~~~-~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~ 652 (1091)
.... .....-..++|+| ++.+|.++-..|.+.-|.+.
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 3111 1111235677776 67788888888888777654
No 222
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.59 E-value=2.4e-11 Score=137.69 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=151.4
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc-----cEEEEEECCCCCE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGSL 410 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~~ 410 (1091)
.|....+.-+.+ .++.+..+..+.+||...+...... .+.. ...-+.++++.-+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i--------------------~~~er~~l~~~~~~g~s~~~~~ 147 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKI--------------------QSDERCTLYSSLIIGDSAEELY 147 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhc--------------------CCCceEEEEeEEEEeccCcEEE
Confidence 444455566665 4577888899999999877665421 1211 2233557788889
Q ss_pred EEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE-EecCCCcceE
Q 001367 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVY 489 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~ 489 (1091)
+++|+.-+.|.+|+....+.. ..+.||.+.|.++.|+.||. ++++.|.|.++++|++++++... ..-+|...|.
T Consensus 148 i~~gsv~~~iivW~~~~dn~p---~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKP---IRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred EEeccccccEEEEeccccCCc---ceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeE
Confidence 999999999999999833211 15789999999999999999 89999999999999999998776 6678999999
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC-CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
.++|.++ .+++++.|-+.++|+.+..... .+..|. ..+..++..++...+++++. |+.+++|+....
T Consensus 223 ~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 223 ACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred EEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 9999654 8999999999999976544433 555543 46889999988888888876 667999987653
No 223
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2e-14 Score=149.56 Aligned_cols=245 Identities=13% Similarity=0.186 Sum_probs=169.7
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
+-+.|.||++-|.|++|+.||. +|++|+.|-.+.|||.-..+.+.. +-+||...|.++.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence 3467899999999999999998 889999999999999987666643 256899999999999
Q ss_pred C--CCCEEEEEECCCEEEEEEeeCCcc-------cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 406 P--DGSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 406 p--dg~~las~~~d~~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
| +.+.+++|..|..|+++|+...+. ......+..|...|..++-.|++.. .+.+++.||+|+-+|++...
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence 9 678899999999999999985221 2233346679999999999999955 89999999999999998632
Q ss_pred e-eEE---------ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee-----ecCCCCcEEEEE-EcCC
Q 001367 477 R-TYS---------FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMA-YSAN 540 (1091)
Q Consensus 477 ~-~~~---------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~~~-~s~d 540 (1091)
. ... +...--...++.++|.. ..+|+.|+.|-..++||.+....... .........|+. |+|.
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~ 260 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG 260 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence 1 111 11111234667777664 47999999999999999643211110 000111111221 2222
Q ss_pred CCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEE
Q 001367 541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616 (1091)
Q Consensus 541 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 616 (1091)
+- .. ..+..... ...++-+.|+|+|.-+++.-....|+++|+..++....+
T Consensus 261 hl----kn--------------~~gn~~~~-------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 261 HL----KN--------------SQGNLDRY-------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cc----cC--------------cccccccc-------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 11 00 00100000 124667899999988888766678999999887765544
No 224
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.58 E-value=6.3e-09 Score=126.28 Aligned_cols=509 Identities=12% Similarity=0.134 Sum_probs=283.9
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEE----EeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
....|.++.+-++...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+..+.++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999998 444432 11 2233456899999999999 66666667888877
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc--------------eeeecCCCCcEEEEE
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------------RVDYDAPGLGCTRMA 536 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~i~~~~ 536 (1091)
+ .+-..+....-+..... ....++.+..+.=.-+.=..++. ...+. ....-..++
T Consensus 148 t-~~fd~i~E~~l~~~~~~---------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS 216 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFG---------ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS 216 (928)
T ss_pred e-ccceEEEEeecCccccC---------CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence 5 55555554433221110 01223322211100000000000 01111 233456789
Q ss_pred EcCCCCEEEEEecCCC-C-ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCe
Q 001367 537 YSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQ 611 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~---dg~i~iwd~~~~~ 611 (1091)
|-.||+++++.+.+.. + ...+++|+-+ |.+...-.... +--.+++|-|.|+++++... ...|.+|..+ |-
T Consensus 217 WRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GL 291 (928)
T PF04762_consen 217 WRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GL 291 (928)
T ss_pred ECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-Cc
Confidence 9999999998876332 3 5889999965 66544444322 44567899999999988653 4567777744 43
Q ss_pred eEEEEeCC--CCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCccc
Q 001367 612 LLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 689 (1091)
Q Consensus 612 ~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~ 689 (1091)
.-..+... .....|..+.|++|+..||+...|. |.+|...+-....+..- .|
T Consensus 292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei--------~~----------------- 345 (928)
T PF04762_consen 292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI--------RF----------------- 345 (928)
T ss_pred EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE--------Ec-----------------
Confidence 33334332 2334689999999999999988665 99998775532211110 00
Q ss_pred CCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCC-eEEEeecCceEEEeecCCcccc
Q 001367 690 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLT 768 (1091)
Q Consensus 690 ~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~~~~ 768 (1091)
+ ....+..+.|+|... .|...+.+|.+..+++.
T Consensus 346 --------------------------------------~---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~----- 379 (928)
T PF04762_consen 346 --------------------------------------S---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA----- 379 (928)
T ss_pred --------------------------------------c---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE-----
Confidence 0 011122255555432 35555555666665542
Q ss_pred cccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC-CCCEEEEEeCCeEEEEEccCceeE-----EEecCCC
Q 001367 769 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTI-----LTIMPPS 842 (1091)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~~~dg~i~iwd~~~~~~~-----~~~~~~~ 842 (1091)
|+...+. ..+| |...+++.++.++.+-.+...... ..+. ..
T Consensus 380 -------------~~v~~s~-------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~ 426 (928)
T PF04762_consen 380 -------------WDVSRSP-------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LP 426 (928)
T ss_pred -------------EEEEecC-------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CC
Confidence 1111111 0111 222344444556776665543221 2222 34
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce--------eeeec----------cccCCeEEEEECCCCCEEEEEe
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------ISKLE----------GHSKRVTGLVFSDALNILVSSG 904 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~--------~~~l~----------~h~~~V~~l~~spdg~~las~s 904 (1091)
..|.+++|++ ++..+|+-..||.|.+|....... ...+. .-...+..++|..+...++...
T Consensus 427 ~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 427 SPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Confidence 6899999999 666688899999999998544221 11111 1234578889988877776665
Q ss_pred CC---CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCE
Q 001367 905 GD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPI 980 (1091)
Q Consensus 905 ~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v 980 (1091)
.+ ..+.++++...+.. .......... ..+..+...++...++. ..+|.+..++.........-++. ...-
T Consensus 506 ~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c~~ 579 (928)
T PF04762_consen 506 SDSNQSKIVLVDIDDSENS--ASVESSTEVD---GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PCPW 579 (928)
T ss_pred cCcccceEEEEEeccCCCc--eeEEEEeccC---ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CCcE
Confidence 54 57888888543211 1111111111 13555555566553444 77888887766544322211111 2222
Q ss_pred EEEEEeeCCC---EEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEE
Q 001367 981 SQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1057 (1091)
Q Consensus 981 ~~v~fs~dg~---~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w 1057 (1091)
..+....+.. .++.-+..|.+++ ++..++ ..+.+ ++.+ +.+|+.......+++.
T Consensus 580 ~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la--------------~~~tS--F~v~---~~~Ll~TT~~h~l~fv 636 (928)
T PF04762_consen 580 MEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA--------------SNCTS--FAVT---DSFLLFTTTQHTLKFV 636 (928)
T ss_pred EEEEEECCccceeEEEEECCCCEEEE----CCEEEe--------------cCCce--EEEE---cCEEEEEecCceEEEE
Confidence 3333333332 3443334444443 233331 12333 3444 3577777778889999
Q ss_pred ecC
Q 001367 1058 EPN 1060 (1091)
Q Consensus 1058 ~~~ 1060 (1091)
++.
T Consensus 637 ~L~ 639 (928)
T PF04762_consen 637 HLN 639 (928)
T ss_pred ECc
Confidence 997
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.6e-12 Score=127.57 Aligned_cols=260 Identities=12% Similarity=0.116 Sum_probs=163.5
Q ss_pred cccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCC
Q 001367 733 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 812 (1091)
Q Consensus 733 ~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 812 (1091)
...|++++|-|.+..-++.+..+-|.+|..+..... .+.....+..+... +...+| ..|+++.+.+|
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~----------~r~~~~~s~~~~qv--l~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA----------NRNIRMMSTHHLQV--LQDPGH-NPVTSMQWNED 206 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCccccc----------ccccccccccchhh--eeCCCC-ceeeEEEEcCC
Confidence 346778888887766777777778888876543210 00000111111222 222234 78999999999
Q ss_pred CCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEE
Q 001367 813 DAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 890 (1091)
Q Consensus 813 g~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 890 (1091)
|..+++++ +..|.|||..++..+.......+.++-+.||| |+.+|..++-|+..++|+...........--.+.|+.
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence 99999998 67899999999988776655667889999999 8899999999999999965543322333334568999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCc----ee------eeee------eeccCCCcCCCCCceEEEEcCCCCEEEEEe
Q 001367 891 LVFSDALNILVSSGGDAQIFVWDVDGWG----IQ------TCRS------LQTPDGVMTLAPSETHIQFHKDQTRFLLVH 954 (1091)
Q Consensus 891 l~~spdg~~las~s~Dg~i~vwd~~~~~----~~------~~~~------~~~~~~~~~~~~~i~~l~fs~dg~~la~~~ 954 (1091)
.+|+|+|++|..+.. |.-++|.+.-.. .. .... .....+..-..+++.+++|.|.|.+||+..
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 999999988764432 223344432211 00 0001 111112111225789999999999999953
Q ss_pred cC---------eEEEEEcCCcceeeeeecCC--ccCEEEEEEee---CCCEEEEEEcCCcEEEEeCC
Q 001367 955 ET---------HLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 955 d~---------~i~vwd~~~~~~~~~~~~~h--~~~v~~v~fs~---dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
.+ .|.+||....-.+.-.+.+- ......++|.| +|.+|..+=..|.+.-|++.
T Consensus 365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 32 36677766544333222221 22345677776 56677777667777766653
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.9e-12 Score=146.37 Aligned_cols=238 Identities=11% Similarity=0.117 Sum_probs=156.6
Q ss_pred CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC---CCEEEEEEeeCCcccce
Q 001367 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1091)
Q Consensus 357 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 433 (1091)
..|.+||...+.... +..+...+.+.+|||||+.||..+. +..|.+|++.+|+...
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 368888887654332 3446678999999999999997642 4579999998875322
Q ss_pred eEEEeccccCeeEEEEcCCCCceEEEEeeCCC--cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC-Ce
Q 001367 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK 510 (1091)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~ 510 (1091)
+....+.+..++|+|||+. ++++.+.+| .|.+||+.+++..+ +..+...+....| ++||+.|+..+.+ +.
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~w--SPDG~~I~f~s~~~g~ 310 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTW--FPDSQNLAYTSDQAGR 310 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEE--CCCCCEEEEEeCCCCC
Confidence 2223334557899999995 233334444 58999998887654 4334455667777 4567777766654 44
Q ss_pred EEEE--ecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 511 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 511 i~iw--d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
..+| |+..+.. ..+...........|+|||++++..+... +...|++||+.+++... +... .......|+|
T Consensus 311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~Sp 383 (429)
T PRK03629 311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDT----FLDETPSIAP 383 (429)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCC----CCCCCceECC
Confidence 4555 5554433 23333344456789999999998876432 35679999998886543 3321 1234578999
Q ss_pred CCCEEEEEeCCCe---EEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 589 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 589 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
||+.++.++.++. +++++++ |.....+..+.+ .+...+|+|
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 9999999887654 6777874 444455554333 467788876
No 227
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=3.4e-11 Score=129.60 Aligned_cols=549 Identities=11% Similarity=0.088 Sum_probs=310.2
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
...|++|+.... ++|+|+.||.++|-.+.+...-...+ -+...+...-..++.||++.|.-+.|+.+.+.|-++.
T Consensus 16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred eEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 788999999887 67999999999999987643221100 0111222223345899999999999999999999999
Q ss_pred CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee-EEecCCCcceEEEeec
Q 001367 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~ 494 (1091)
.+|.|.||-+-.|.-.... .-......|.+++|+.||. .+.....||.|.|=.++..+.- +.+++ .....+.|
T Consensus 91 t~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~w- 164 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLW- 164 (1189)
T ss_pred CCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcch--heccceee-
Confidence 9999999999887654432 1123456789999999999 6777788888877654432211 11221 11223455
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCce-------e----eecCCCCcEEEEEE--------cCCCCEEEEEecCCCCce
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGAR-------V----DYDAPGLGCTRMAY--------SANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------~----~~~~~~~~i~~~~~--------s~d~~~l~~~~~~~~~~~ 555 (1091)
++|...++.+-..|.++++|.+..-.. . .+......+..+.| -||...++.+.. +|
T Consensus 165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG 239 (1189)
T KOG2041|consen 165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG 239 (1189)
T ss_pred -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence 456677788888899999986532111 1 11112223444554 257778888876 44
Q ss_pred EEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCeeEEEEeCCCCCCCC
Q 001367 556 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1091)
Q Consensus 556 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1091)
.+.+..-.+ .+++..-.+ -.+....|+++|..+++++.+ +.|.++. .-|+.+.++..++. .|
T Consensus 240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--CI 311 (1189)
T ss_pred eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--ee
Confidence 455543332 233322222 357788999999999997743 2455554 34677777776655 68
Q ss_pred ceEEEccCCCEEEEEECCCeEEEEECCCC--------CeecccccccccceeeeeccccccccccccCCcccCCCCCCCC
Q 001367 626 PRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDV 697 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~ 697 (1091)
+.++|-..|-.++.+- |+.|++=++... ..+........+..++.|.........--.--.+.+..+..+-
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~eh 390 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREH 390 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheeccc
Confidence 8888887776666553 355655544432 1222222333333444443221110000000011111112222
Q ss_pred CcccccccccccccccccccCCc-----ccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccc
Q 001367 698 KPEISVEAENKSEVEKPLFARPS-----ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 772 (1091)
Q Consensus 698 ~~l~s~~~d~~i~~w~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~ 772 (1091)
-.++.-..|+.+.-++.-..... -|..+..+....-..|.-.-..-++..++.++.+ .+.+|.+...+......
T Consensus 391 CvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~ 469 (1189)
T KOG2041|consen 391 CVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLA 469 (1189)
T ss_pred EEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhh
Confidence 22333333344333321100000 0111111111112233333334455555555544 77888876655421111
Q ss_pred ---eeeccCCccccCCCCCceeeecC---CCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCe
Q 001367 773 ---ATTKVPPRLYQPRHGPQFMVNDT---TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA 845 (1091)
Q Consensus 773 ---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i 845 (1091)
........+=+..+|..-...+. +..|...+|.+++.| .+++..+- .|.|.-|.+.......... -+..+
T Consensus 470 ~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~ 546 (1189)
T KOG2041|consen 470 GVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSI 546 (1189)
T ss_pred hhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc-cCchh
Confidence 11111222233333421111111 123567788888875 46677776 6899999988877665554 45678
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecc---Ccceee-eeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q 001367 846 TSLAFNPHDNNVIAIGMDDSTILIYNAR---SSEVIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 914 (1091)
Q Consensus 846 ~~l~~s~~~~~~la~g~~dg~i~iwd~~---~~~~~~-~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~ 914 (1091)
..++..- +...+|+-..-|.+.+.|+. +|..+. .+......|+++.|..|...|..--.--.+.|++-
T Consensus 547 y~~~lNC-nstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 547 YSIKLNC-NSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred eeEeecc-CcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 8898888 77888888888999998886 344333 44445667999999887755543333334555543
No 228
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.55 E-value=1e-12 Score=128.63 Aligned_cols=238 Identities=14% Similarity=0.099 Sum_probs=177.4
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
-..+|+|.||++|++ .+|++-....|.||.......-. ...++..|...|+.+.|+|....|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 345999999999998 67888888999999987765211 1233778999999999999999999
Q ss_pred EEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee----EEecCCCcce
Q 001367 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPV 488 (1091)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~v 488 (1091)
+|+.|...+||....+...++...+..|...++++.|+|.++ .+++|+.-..|.||=.+...-- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999966666667777888999999999999999 7999999999999876644321 1223466789
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEec-----CCC-------------CceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLY-----DSL-------------GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~-----~~~-------------~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
.++.|+++ +-+++.|+.|+..+++.. +.. ....++....+.+..+.|+|+|..|+-.+-
T Consensus 150 ~sldWhpn--nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHPN--NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccCC--cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 99999764 468999999999999853 211 111233355668999999999999998875
Q ss_pred CCCceEEEEEecCCce-eeEEEecccccccceEEEEEcCCCCEEEEEeCC
Q 001367 551 KEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d 599 (1091)
+..+.+-|..... .+....... -+..++.|-.+ +.++.++.|
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~---lP~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQ---LPLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred ---CCceEEeecCCCchhccchhhcc---CCceeeEeecC-CceeecCCC
Confidence 5568888876654 233332222 45666666554 345555554
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.2e-12 Score=137.64 Aligned_cols=285 Identities=14% Similarity=0.187 Sum_probs=206.8
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
+|...-+.+..||||+|++|+|...-.|++||+..-.+...+.+ ....|.-.-+|.|-..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~ 109 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS 109 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence 56668889999999999999999999999999987665543211 12455556666676777
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1091)
+.-..|.+|.+..-- |.... ..++ ..-.+++++.-... |+.++....|+-++++.|+.+..|....+.++++
T Consensus 110 v~L~~DR~IefHak~-G~hy~--~RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKY-GRHYR--TRIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred eEeecCceeeehhhc-Ceeee--eecC---cCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence 777788877664422 21111 0111 12234555544442 4444445578899999999999998888999999
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC------C-----cEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------L-----GCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~-----~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
..++.+ .+|++|+.+|.|..||.+.......+.... + .|+++.|+.+|-.+++|.. .|.+++|
T Consensus 182 ~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy 255 (703)
T KOG2321|consen 182 SINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY 255 (703)
T ss_pred eecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence 886543 589999999999999998876655443221 1 4899999999999999876 6679999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 639 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 639 (1091)
|+++.+++..-.... .-+|..+.|.+.+.. -+.......++|||-.+|+....+... ..++.+|+-|++.++++
T Consensus 256 DLRa~~pl~~kdh~~--e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGY--ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFFT 330 (703)
T ss_pred EcccCCceeecccCC--ccceeeecccccCCCceEEecchHHhhhcccccCCceeecccc---CCcCceeeecCCceEEE
Confidence 999988765543222 467888999776332 233335567999999999998887643 35899999999999999
Q ss_pred EECCCeEEEEECCCC
Q 001367 640 IANENRIKILETPES 654 (1091)
Q Consensus 640 ~~~dg~i~iwd~~~~ 654 (1091)
+-.++.+..|-+...
T Consensus 331 Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 331 ANESSKMHTYYIPSL 345 (703)
T ss_pred ecCCCcceeEEcccc
Confidence 999988888876643
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.2e-12 Score=145.75 Aligned_cols=237 Identities=13% Similarity=0.071 Sum_probs=160.8
Q ss_pred CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC---CCEEEEEEeeCCcccce
Q 001367 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 433 (1091)
Q Consensus 357 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 433 (1091)
..|.+||...+.... +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 478888875544322 5568889999999999999998763 468999999887542
Q ss_pred eEEEeccccCeeEEEEcCCCCceEEEEeeCCCc--EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEec-CC-
Q 001367 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG- 509 (1091)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg- 509 (1091)
.+..+.+.+...+|+|||+. ++++.+.++. |.+||+.++.. ..+..+........|+ +||+.++..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence 34556677889999999995 3455665554 77789887765 4565566656667774 56777776653 33
Q ss_pred -eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 510 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 510 -~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
.|.+||+..+.... +......+....|+|||+.|+...... +...|.+||..++.. +.+.. . ..+....|+|
T Consensus 314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp 386 (435)
T PRK05137 314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP 386 (435)
T ss_pred CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence 57778876554433 333344566788999999998876432 356799999866543 33322 1 2456788999
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 589 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 589 ~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
||+.++..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 99998875532 3688888876654 3443221 355667766
No 231
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.6e-11 Score=129.74 Aligned_cols=285 Identities=11% Similarity=0.129 Sum_probs=186.1
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE-
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 414 (1091)
.....++|++|+ ++|.+ .+..++|++..++..+.+ -....+.++.|||-|.+|.+=
T Consensus 36 ~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T~e 92 (566)
T KOG2315|consen 36 PCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLTWE 92 (566)
T ss_pred cceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccccc
Confidence 567889999998 65665 458899999988864432 122378999999999999863
Q ss_pred ----ECC-----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC
Q 001367 415 ----YSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 415 ----~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
..+ ..+.+|+++++.... .+..-...-++..|+.|.. ++.=-..+.+.+|++.+-+.+. -.-|.
T Consensus 93 ~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~~ 165 (566)
T KOG2315|consen 93 PWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLSV 165 (566)
T ss_pred ccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eeeec
Confidence 122 347899999953322 1222111226899999987 3333335679999987643321 12367
Q ss_pred cceEEEeecccCCceEEEE-----EecCCeEEEEecCCCCceeeecC---CCCcEEEEEEcCCCCEEEEEec---C----
Q 001367 486 APVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGT---S---- 550 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~d~~~l~~~~~---~---- 550 (1091)
..|..+.+++.+.-..+++ .+.-+.++||.+.....-..... -...-..+.|++-|.-|++... +
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~ 245 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA 245 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence 7788888887755555554 35566799997762221111110 1112235778887765443321 1
Q ss_pred -CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE--EeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 551 -KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 551 -~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
-.|+..+++.+++.......+.. .++|.++.|+|+++.+++ |-.-.++.|+|++ +.++..+... .=++
T Consensus 246 SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg----pRN~ 316 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG----PRNT 316 (566)
T ss_pred cccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC----Cccc
Confidence 13466788888874444333332 479999999999987766 5578899999985 4555555432 3478
Q ss_pred EEEccCCCEEEEEECC---CeEEEEECCCCCeecc
Q 001367 628 ICFNKNGTLLAVIANE---NRIKILETPESNSVDA 659 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~ 659 (1091)
+-|+|.|++++.++-+ |.|.+||+.+.+.+..
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence 9999999999988874 8899999887655543
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=7.5e-13 Score=138.09 Aligned_cols=278 Identities=10% Similarity=0.127 Sum_probs=185.6
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE-----CCCCCE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-----SPDGSL 410 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-----spdg~~ 410 (1091)
.++...++-.|++|..--+ ..+.+|+...+..+.. ++.+..+.+ ...+|-+| .|++--
T Consensus 125 ~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~-------------pi~k~~y~g--t~P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSK-------------PIDKREYKG--TSPTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEecC--CeEEEEEccCcchhcc-------------chhhhcccC--CCCceecccccccCCCCcc
Confidence 4556666777776654333 6688999886544421 122222322 23344444 456778
Q ss_pred EEEEECCCEEEEEEeeCCcccceeEEEe--ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 411 LGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
|..|-..|.|++.|....+..+ +.... -....|+++.|-|.+.. .++.+-.+|.++++|.. +....
T Consensus 188 llIGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~ 255 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA 255 (636)
T ss_pred eEEeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence 8889889999999887633222 11111 13368999999998776 56667789999999852 11111
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
+...+..-+++..+......+. .+...+..+....+.|...+|+|||++||+.+. |+.++|+|..+.+++
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELL 325 (636)
T ss_pred CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHH
Confidence 1112211223223322211110 111333344444558899999999999999986 888999999999888
Q ss_pred EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc----------------
Q 001367 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---------------- 632 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---------------- 632 (1091)
..++..- +...|++|+|||++|++|++|.-|.||.+..++.+..-.+| ...|..|+|.|
T Consensus 326 g~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH--kSWVs~VaFDpytt~~ee~~~~~~~~~ 400 (636)
T KOG2394|consen 326 GVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH--KSWVSVVAFDPYTTSTEEWNNFSGMDS 400 (636)
T ss_pred HHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc--ccceeeEeecccccccccccccccccc
Confidence 7777666 78999999999999999999999999999999988776555 45888888872
Q ss_pred -------------------C-------------CCEEEEEECCCeEEEEECCCCCee
Q 001367 633 -------------------N-------------GTLLAVIANENRIKILETPESNSV 657 (1091)
Q Consensus 633 -------------------~-------------~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1091)
+ .-++.+.+.|..+.+||+......
T Consensus 401 ~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 401 TFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred cccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 0 125677888999999999876443
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=5.7e-12 Score=123.51 Aligned_cols=241 Identities=12% Similarity=0.166 Sum_probs=168.4
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCC--CCeEEEEEcCCCCcEEE-EEeCC------CeEEEEec
Q 001367 802 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIA-IGMDD------STILIYNA 872 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~~la-~g~~d------g~i~iwd~ 872 (1091)
....+++|..|...++++.+...+||+.+-.+.....+.+. -.+..+-|-. ++|| +|+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceEEEEec
Confidence 34456999999999999999889999987644432222222 2333444432 3444 44433 48999996
Q ss_pred cCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 873 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 873 ~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
...+++.++. ...+|.++.+++| .|+.. -.+.|+||.....-.. ...+.+..... .+.+++=..+-.+||.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~-l~~~et~~NPk----GlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL-LHVIETRSNPK----GLCSLCPTSNKSLLAF 153 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh-eeeeecccCCC----ceEeecCCCCceEEEc
Confidence 6667777776 6688999999876 45544 4677999999853311 12222222111 1222222233344444
Q ss_pred -E-ecCeEEEEEcCCcce-eeeeecCCccCEEEEEEeeCCCEEEEEEcCCc-EEEEeCCCCceEEEeecccccCCCCccc
Q 001367 953 -V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCL 1028 (1091)
Q Consensus 953 -~-~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1091)
| .-|+|+|-|+...+. ...+...|...|.+++.+-+|.++||+|..|+ |||||..+|+.++.++.... ..
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d------~A 227 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD------RA 227 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc------hh
Confidence 4 458999999987665 34557889999999999999999999999998 89999999999988873321 23
Q ss_pred ccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1029 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1029 ~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
.|+ +++|+| +..+|+++++.|+|++|.+.+..
T Consensus 228 ~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 228 DIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 355 789999 58999999999999999998755
No 234
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.52 E-value=9.3e-12 Score=129.56 Aligned_cols=280 Identities=14% Similarity=0.110 Sum_probs=186.1
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
-.-++..++|||.|+ +|++... ..|.+|.-..+..+.. + -...|..+.|||+++||.
T Consensus 31 ~~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~-------------------~--~~~~V~~~~fSP~~kYL~ 87 (561)
T COG5354 31 ENWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVR-------------------F--RHPDVKYLDFSPNEKYLV 87 (561)
T ss_pred cCcchhheeecCcch-heehhhc-cceEEccccchhheee-------------------e--ecCCceecccCcccceee
Confidence 445899999999998 5566544 5699999877765532 1 225799999999999999
Q ss_pred EEECCC---------------EEEEEEeeCCcccceeEEEeccccC--ee-EEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 413 VAYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 413 s~~~d~---------------~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
+=+..+ .+.+||+.+|..+. .+.+...+ .+ -+.|+-+.+ +++-. -...++|+++ +
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t 160 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-T 160 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-C
Confidence 865433 48999999987654 34444443 44 688999888 44433 2346999997 4
Q ss_pred Ccee-EEecCC-CcceEEEeecccCCceEEEE-----EecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 475 GSRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 475 ~~~~-~~~~~~-~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
+... ..+..- ...|....++|..++..|+. .+.++++++|.+.....+.........-..+.|.+.|++|++-
T Consensus 161 ~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 161 DNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred CccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEE
Confidence 4322 122111 24566777777766655554 3567889999988655555433333334567889999887754
Q ss_pred ec-------CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE--eCCCeEEEEECCCCeeEEEEeC
Q 001367 548 GT-------SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 548 ~~-------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
.. +--|+..++++++..... ....... ++|...+|.|.++.+++. -.+..+.++|++.. +...++.
T Consensus 241 ~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe 315 (561)
T COG5354 241 VMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE 315 (561)
T ss_pred EEEeeecccceeccceEEEEeeccccc-ceecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCC
Confidence 32 112456688888874433 2222323 799999999999887764 47888999998776 4444433
Q ss_pred CCCCCCCceEEEccCCCEEEEEECC---CeEEEEEC
Q 001367 619 GGGLPENPRICFNKNGTLLAVIANE---NRIKILET 651 (1091)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iwd~ 651 (1091)
.. =+.+.|+|.++++++++-| |.+.+|+.
T Consensus 316 ~~----rNT~~fsp~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 316 QK----RNTIFFSPHERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred cc----cccccccCcccEEEEecCCccccceEEecc
Confidence 22 3678999999999988765 44555543
No 235
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.52 E-value=8.2e-09 Score=125.33 Aligned_cols=578 Identities=11% Similarity=0.111 Sum_probs=302.6
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEE----EcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLW----DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
..+.|.++.|-+|... ++.+..+|.|.+. +..+...-. ...-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 3468999999999874 4667788999999 554443322 22245799999999999
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEecccc-----CeeEEEEcCCCCceEEEEeeCCCcE-E-EEeCCCC-ceeEE
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG-----NVNDLAFSAPCKQISVITCGDDKTI-K-VWDAVTG-SRTYS 480 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~-----~v~~~~~s~d~~~~~l~s~~~d~~i-~-iwd~~~~-~~~~~ 480 (1091)
..||..+.++++.+-+-. -+.+. +..-+.. .-..+-|-....+ +-|+.-+.. + .=|.... .....
T Consensus 133 Ella~vT~~~~l~~mt~~-fd~i~---E~~l~~~~~~~~~~VsVGWGkKeTQ---F~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRD-FDPIS---EVPLDSDDFGESKHVSVGWGKKETQ---FHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred CEEEEEeCCCEEEEEecc-ceEEE---EeecCccccCCCceeeeccCcccCc---cCcchhhhhhhhccCCCCCccccCc
Confidence 999999999988776422 11111 1111110 1112333222111 001100000 0 0010000 00011
Q ss_pred ecCCCcceEEEeecccCCceEEEEEec---C---CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
+. +...-..++| .+||.++++.+. . ..+++|+-+ +..........+--.+++|.|.|+++++... ....
T Consensus 206 ~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~ 280 (928)
T PF04762_consen 206 LS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDR 280 (928)
T ss_pred cc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCC
Confidence 22 3333444555 789999998875 3 469999865 3322233333333457899999999998875 2335
Q ss_pred eEEEEEecCCceeeEEEeccc-ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeE--EEEeCCCCCCCCceEEEc
Q 001367 555 SFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s 631 (1091)
..|.+|.- +|-.-..|.... .....|..+.|++|+..|+..-.|. |.+|-..+.... +.+..... ..+..+.|+
T Consensus 281 ~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wd 357 (928)
T PF04762_consen 281 HDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWD 357 (928)
T ss_pred cEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEEC
Confidence 56777764 443333343321 1246789999999999999977655 999998887643 33333222 234569999
Q ss_pred cC-CCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 632 KN-GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 632 ~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
|. ...|.+.+.+|.+..++..-........ +|+..-.+..-....+.
T Consensus 358 pe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~--------------------------------~~~D~g~vaVIDG~~ll 405 (928)
T PF04762_consen 358 PEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS--------------------------------SPNDNGTVAVIDGNKLL 405 (928)
T ss_pred CCCCCEEEEEecCCcEEEEEEEEEEEecCCC--------------------------------CccCceEEEEEeCCeEE
Confidence 94 4567777777887766543110000000 11000000000001222
Q ss_pred ccccc---ccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCC
Q 001367 711 VEKPL---FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 787 (1091)
Q Consensus 711 ~w~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1091)
+-.+. ...+.....+. -...|..++|++++..+++...||.+.+|.++............. ......
T Consensus 406 lTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~ 475 (928)
T PF04762_consen 406 LTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL-----SSISLD 475 (928)
T ss_pred EecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh-----hhcccc
Confidence 22211 11111122222 246899999999999899999999999999765432110000000 000000
Q ss_pred CceeeecCCCCCCCCCeeEEEecCCCCEEEEEeC----CeEEEEEccCce---eEEEecCCCCCeEEEEEcCCCCcEEEE
Q 001367 788 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAI 860 (1091)
Q Consensus 788 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~~la~ 860 (1091)
. ... .........+..++|..+..+++.... ..+.+++....+ ...........+..+...+ +...++.
T Consensus 476 ~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 551 (928)
T PF04762_consen 476 S-MDI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYI 551 (928)
T ss_pred c-ccc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEE
Confidence 0 000 000013456778888888877776653 468888774332 2333333445565666665 4444666
Q ss_pred EeCCCeEEEEeccCcce-eeeeccccCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCC
Q 001367 861 GMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 937 (1091)
Q Consensus 861 g~~dg~i~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg--~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1091)
-..+|.+...+...... +..+..-...+..+.+.... ..++.-+..|.+++ .+ ..+. ..
T Consensus 552 q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~------~~la---------~~ 613 (928)
T PF04762_consen 552 QTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS------RLLA---------SN 613 (928)
T ss_pred EECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---CC------EEEe---------cC
Confidence 77899998776654322 22333222222222222221 14444455554443 21 1111 13
Q ss_pred ceEEEEcCCCCEEE-EEecCeEEEEEcCC-cceeeeeecCCcc-CEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceE
Q 001367 938 ETHIQFHKDQTRFL-LVHETHLAIYEAEE-LTCLKQWFPISSV-PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1012 (1091)
Q Consensus 938 i~~l~fs~dg~~la-~~~d~~i~vwd~~~-~~~~~~~~~~h~~-~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~ 1012 (1091)
+++.++ .+.+|+ +.....+++.++.. ...+......+.. .-..+.--..|..|+++--...=.|..++-|.+-
T Consensus 614 ~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 614 CTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred CceEEE--EcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccCccCCEEEEEeCCCceEEEEcCCCchh
Confidence 555555 344554 46677788888871 1111111100000 0011222346778887765555567788887664
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.7e-12 Score=146.73 Aligned_cols=229 Identities=14% Similarity=0.090 Sum_probs=150.3
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEc--CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~--~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1091)
....+.+..+...+.+.+|||||+.|+.+.. .+..|.+|++.+|+... +......+..
T Consensus 188 g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~ 247 (429)
T PRK03629 188 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGA 247 (429)
T ss_pred CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCC
Confidence 3344556667778999999999997654432 24579999998886443 1122233456
Q ss_pred EEECCCCCEEEEE-ECCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC-CCc--EEEEeCCCC
Q 001367 402 VVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVWDAVTG 475 (1091)
Q Consensus 402 l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~--i~iwd~~~~ 475 (1091)
++|||||++|+.. +.++ .|++||+.+++.. .+..+...+....|+|||+ .|+..+. ++. |.++|+.++
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCC
Confidence 8999999999875 3344 5899999887533 3444555688999999999 4544443 344 555577666
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecC---CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
+. ..+..+........| ++||++++..+.+ ..|.+||++++.... +... .......|+|||+.|+..+.++.
T Consensus 322 ~~-~~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 322 AP-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred Ce-EEeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence 54 334333344455666 4577777766543 358888988765443 2221 22346789999999998886443
Q ss_pred CceEEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
...++++++. |...+.+.++. +.+...+|+|
T Consensus 397 -~~~l~~~~~~-G~~~~~l~~~~---~~~~~p~Wsp 427 (429)
T PRK03629 397 -GSVLNLVSTD-GRFKARLPATD---GQVKFPAWSP 427 (429)
T ss_pred -ceEEEEEECC-CCCeEECccCC---CCcCCcccCC
Confidence 5568888884 44455666555 5677788877
No 237
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.52 E-value=2.4e-09 Score=110.51 Aligned_cols=517 Identities=14% Similarity=0.120 Sum_probs=275.0
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEE----E--cCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccE
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLV----G--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llas----g--~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1091)
..+.+..|-+-|+...|+|||+.++.+ | ...+.+.+.+.+.|+..+..- + | ...
T Consensus 70 ~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTy-----------------f-G--r~f 129 (668)
T COG4946 70 KPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITY-----------------F-G--RRF 129 (668)
T ss_pred CeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEE-----------------e-c--ccc
Confidence 345667777899999999999976542 2 223557788888887665311 2 2 333
Q ss_pred EE-EEECCCCCEEEEEECCCE----EEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC---------
Q 001367 400 NR-VVWSPDGSLLGVAYSKHI----VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------- 465 (1091)
Q Consensus 400 ~~-l~~spdg~~las~~~d~~----i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--------- 465 (1091)
+. ..|+|||+.+++...-.- -.+|.+....... -.-.-++.+.+.+- ||. ++.|-.--
T Consensus 130 T~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~----e~LnlGpathiv~~-dg~---ivigRntydLP~WK~Yk 201 (668)
T COG4946 130 TRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKT----EPLNLGPATHIVIK-DGI---IVIGRNTYDLPHWKGYK 201 (668)
T ss_pred ceeeccCCCCCEEEEeccCCCcccceeeeEEccCCcee----eeccCCceeeEEEe-CCE---EEEccCcccCccccccc
Confidence 33 459999999988754321 2344444322100 11123455555553 343 33332110
Q ss_pred ---cEEEEeCCC-CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCC--cEEEEEEcC
Q 001367 466 ---TIKVWDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSA 539 (1091)
Q Consensus 466 ---~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~ 539 (1091)
.=++|--.. |+....+-...+.|.+-.+. .++.-.....+|.=.+|..+-...-. ..|.. ...+=-.+.
T Consensus 202 GGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV---~~RvYFlsD~eG~GnlYSvdldGkDl--rrHTnFtdYY~R~~ns 276 (668)
T COG4946 202 GGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV---GERVYFLSDHEGVGNLYSVDLDGKDL--RRHTNFTDYYPRNANS 276 (668)
T ss_pred CCccceEEEEecCCcceeeeeecCCCcCCceEE---cceEEEEecccCccceEEeccCCchh--hhcCCchhccccccCC
Confidence 123453222 22222222222222221111 11222233344443444332211111 11111 222334567
Q ss_pred CCCEEEEEecCCCCceEEEEEecCCceeeEEEeccccc-----ccceEE---EE-EcC-CCCEEEEEeCCCeEEEEECCC
Q 001367 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSV---VH-FDT-AKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~---v~-~~~-~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
||+.++... .+.|+++|..+......--+.... ...+.- +. |++ +|.+++..|. |...|.+...
T Consensus 277 DGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 277 DGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred CCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence 999888754 334999998876544332221100 001111 11 222 4667666654 5666666555
Q ss_pred CeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC-eEEEEECCCCCeecccccccccceeeeeccccccccccccCCcc
Q 001367 610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1091)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~ 688 (1091)
+-.++.-. ...|.-..+..+++-++.|..|| .+-|++..+++.-...
T Consensus 351 ~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e---------------------------- 398 (668)
T COG4946 351 GYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE---------------------------- 398 (668)
T ss_pred CeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee----------------------------
Confidence 54443321 12366666777777888999988 8899988766322111
Q ss_pred cCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccc
Q 001367 689 SNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 768 (1091)
Q Consensus 689 ~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~ 768 (1091)
..-+.|.++..+++|+.++++.....+.+.|++....
T Consensus 399 ------------------------------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv- 435 (668)
T COG4946 399 ------------------------------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV- 435 (668)
T ss_pred ------------------------------------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-
Confidence 1345788899999999888888888888877654421
Q ss_pred cccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-C----CeEEEEEccCceeEEEecCCCC
Q 001367 769 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G----GVISLYIVMTFKTILTIMPPSP 843 (1091)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d----g~i~iwd~~~~~~~~~~~~~~~ 843 (1091)
.+ . ......-|+.++++|+++++|.+- + ..|+++|+.+++....-. +..
T Consensus 436 ---------------------~~-i---dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 436 ---------------------RL-I---DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred ---------------------eE-e---cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 11 1 112566789999999999999986 3 459999999888665433 444
Q ss_pred CeEEEEEcCCCCcEEEEEeC-------CCeEEEEeccCcceeeeeccccCCeEEEE----ECCCCCEEE-EEeCCCcEEE
Q 001367 844 TATSLAFNPHDNNVIAIGMD-------DSTILIYNARSSEVISKLEGHSKRVTGLV----FSDALNILV-SSGGDAQIFV 911 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~-------dg~i~iwd~~~~~~~~~l~~h~~~V~~l~----~spdg~~la-s~s~Dg~i~v 911 (1091)
.-.+-||.| ++++|..-+. |..+.=+... .|+.+-..+. .||-.+..- .-+.+|.+-+
T Consensus 490 ~DfsPaFD~-d~ryLYfLs~RsLdPs~Drv~fnf~f~---------~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dl 559 (668)
T COG4946 490 YDFSPAFDP-DGRYLYFLSARSLDPSNDRVIFNFSFQ---------RVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDL 559 (668)
T ss_pred cccCcccCC-CCcEEEEEeccccCCCCCeeEEEEEEe---------eeccceEEEecCCCCChhhcCchhcCccccceeh
Confidence 556778999 8888776542 2222222221 1222111110 122222211 1233444433
Q ss_pred EEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-------------E--ecCeEEEEEcCCcceeeeeecCC
Q 001367 912 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-------------V--HETHLAIYEAEELTCLKQWFPIS 976 (1091)
Q Consensus 912 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-------------~--~d~~i~vwd~~~~~~~~~~~~~h 976 (1091)
=+++.. ..++..-++. -.+++=-.+|+.+.- + .-|.+.+||+++.+.-..
T Consensus 560 e~ie~r----~eP~pVee~d------Y~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~----- 624 (668)
T COG4946 560 EGIEDR----VEPFPVEEGD------YRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY----- 624 (668)
T ss_pred hhhccc----ccccccCccc------eeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH-----
Confidence 222221 1112221111 112222233332221 1 236788999887654322
Q ss_pred ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC
Q 001367 977 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 977 ~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
...+.++..|+||+.+.. -.||.+++++++.
T Consensus 625 k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 625 KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 457899999999999888 6899999999876
No 238
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=5.6e-14 Score=143.75 Aligned_cols=268 Identities=16% Similarity=0.166 Sum_probs=211.1
Q ss_pred CccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
......+.++.+|+.|+.|+..|.|..+|+.++.... ++. -...|.++.|..+.+ +++ ......++||| ..|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~A-VAQK~y~yvYD-~~G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFA-VAQKKYVYVYD-NNG 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHH-hhhhceEEEec-CCC
Confidence 4466789999999999999999999999999986544 222 234689999998877 454 44577899999 888
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
..++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++....+....+.+..++-+|-+..+-.|.. +|
T Consensus 201 tElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nG 273 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NG 273 (545)
T ss_pred cEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cc
Confidence 889888755 467778886654 57888999999999999999999888888889999999998888877765 77
Q ss_pred EEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC
Q 001367 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1091)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1091)
+|.+|...+.+++..+..|. ++|.++++.++|.++++++.|..++|||++....+.++.... ....+++|..|.
T Consensus 274 tVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkgl 347 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKGL 347 (545)
T ss_pred eEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Cccccccccccc
Confidence 89999999999998888888 999999999999999999999999999999988777766522 357788887663
Q ss_pred EEEEEECCCeEEEEECCCC-----CeecccccccccceeeeeccccccccccccCC
Q 001367 636 LLAVIANENRIKILETPES-----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1091)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g 686 (1091)
||.+ ....+.||.-... ........-...|..+.|+|.-.++++|-..|
T Consensus 348 -LA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 348 -LALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred -eeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4443 3457899953321 11111112234788999999988888876544
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3.1e-12 Score=145.55 Aligned_cols=238 Identities=16% Similarity=0.115 Sum_probs=157.2
Q ss_pred CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC---CEEEEEEeeCCcccce
Q 001367 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQ 433 (1091)
Q Consensus 357 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~ 433 (1091)
.+|.+||...+.... +..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 468899986543321 44577889999999999999988643 47999999887532
Q ss_pred eEEEeccccCeeEEEEcCCCCceEEEEeeCCC--cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEec-CCe
Q 001367 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK 510 (1091)
Q Consensus 434 ~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~ 510 (1091)
.+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+| ++||+.++..+. +|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~--spDG~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTW--APDGKSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEE--CCCCCEEEEEECCCCC
Confidence 23344455668899999995 334555555 699999988875 445555555566777 456777776653 444
Q ss_pred --EEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 511 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 511 --i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
|.++++.+++... +..........+|+|||++++..... .+...|.+||+.+++.. .+.. . .......|+|
T Consensus 316 ~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~-~---~~~~~p~~sp 388 (433)
T PRK04922 316 PQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTP-G---SLDESPSFAP 388 (433)
T ss_pred ceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCC-C---CCCCCceECC
Confidence 6666665554332 22233344568999999999887542 23557999999888755 3322 1 1234568999
Q ss_pred CCCEEEEEeC---CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 589 AKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 589 ~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
||++++..+. .+.|++++...+ ....+..+.+ .+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g--~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSADG--EVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCCC-ceEEcccCCC--CCCCCccCC
Confidence 9999887664 346888888543 4444443322 356667765
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=5e-12 Score=143.21 Aligned_cols=223 Identities=14% Similarity=0.117 Sum_probs=146.0
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECC---CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1091)
+..+...+.+.+|||||+.|+..+.+ ..|++||+.+++... +....+.+...+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44577889999999999999987643 469999999886432 3334455678999999995 344667777766
Q ss_pred EEe--CCCCceeEEecCCCcceEEEeecccCCceEEEEEec-CCeEEEEecC--CCCceeeecCCCCcEEEEEEcCCCCE
Q 001367 469 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR 543 (1091)
Q Consensus 469 iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~s~d~~~ 543 (1091)
||. +.++. ...+..+........| ++||+.++..+. +|...+|.++ .+... .+...........|+|||++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~w--SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFF--SPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEE--cCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCE
Confidence 665 44443 5566556555666677 457777766554 4666777654 33322 22222333446789999999
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeEEEEeCCC
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~ 620 (1091)
++..+..+ +...|++||+.+++....... .......|+||++.|+.++.++ .+++.+. ++.....+..+.
T Consensus 342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~ 414 (427)
T PRK02889 342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG 414 (427)
T ss_pred EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence 98776432 345799999988875433322 2235678999999998876443 3556666 455555554433
Q ss_pred CCCCCceEEEcc
Q 001367 621 GLPENPRICFNK 632 (1091)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1091)
+ .+...+|+|
T Consensus 415 g--~~~~p~wsp 424 (427)
T PRK02889 415 G--DVREPSWGP 424 (427)
T ss_pred C--CCCCCccCC
Confidence 2 456677776
No 241
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=1.4e-13 Score=140.80 Aligned_cols=273 Identities=18% Similarity=0.171 Sum_probs=210.4
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
.....+.|+.+|++| +.|+..|.|..+|+.++.+..... -...|..+.|-.+.+++|++
T Consensus 130 FGPY~~~ytrnGrhl-llgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA 188 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHL-LLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA 188 (545)
T ss_pred cCCeeeeecCCccEE-EecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh
Confidence 377889999999965 566777999999999998876532 23688999999999999998
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1091)
- ..-++|||-..- .+. .++.| ..|..+.|.|--- +|++++..|.++--|+.+|+.+..+....+.+..++-+
T Consensus 189 Q-K~y~yvYD~~Gt-ElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 189 Q-KKYVYVYDNNGT-ELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred h-hceEEEecCCCc-EEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 4 456999997653 232 44444 4689999999765 89999999999999999999999998888888877765
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecc
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1091)
|- ...+-.|...|+|.+|.....+.+..+..|.++|.++++.++|+++++.+. |..+.|||++.-..+.++..
T Consensus 261 P~--NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t- 333 (545)
T KOG1272|consen 261 PY--NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT- 333 (545)
T ss_pred Cc--cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-
Confidence 54 357888999999999999999999999999999999999999999999987 66799999998776666655
Q ss_pred cccccceEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCe--eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEE
Q 001367 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1091)
Q Consensus 575 ~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1091)
. .+...+++|..| +++.+....|.||. .-.+. .-..+-.|.-...|..+.|.|-...|.+|...|--.+
T Consensus 334 p---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 334 P---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred C---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 2 456778887654 56666667899994 32221 1111112222236889999998777877766554333
No 242
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.5e-12 Score=146.35 Aligned_cols=230 Identities=15% Similarity=0.144 Sum_probs=150.2
Q ss_pred chheeeecccCCCCcEEEEEcCCCceEEEEEcC--CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE
Q 001367 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1091)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~--dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1091)
.....+.+..|...+.+.+|||||++++.+... +..|.+||+.+|+... +..+.+...
T Consensus 192 ~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~ 251 (433)
T PRK04922 192 DGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGING 251 (433)
T ss_pred CCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCcc
Confidence 344556677777799999999999966544322 3469999998887543 223344556
Q ss_pred EEEECCCCCEEEEE-ECCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCCc--EEEEeCCC
Q 001367 401 RVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVWDAVT 474 (1091)
Q Consensus 401 ~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~~--i~iwd~~~ 474 (1091)
+++|||||+.|+.. +.++ .|++||+.+++.. .+..+.......+|+|||++ ++..+ .++. |.++|+.+
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCC
Confidence 78999999988754 4444 6999999887532 34455555678899999994 54444 4444 77777777
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCC---eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
++.. .+..+.......+| +++|++++..+.++ .|.+||+.++.... +. +........|+|||++++.....
T Consensus 326 g~~~-~lt~~g~~~~~~~~--SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~~- 399 (433)
T PRK04922 326 GSAE-RLTFQGNYNARASV--SPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATRE- 399 (433)
T ss_pred CCeE-EeecCCCCccCEEE--CCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEec-
Confidence 6543 23223333445667 45677777665433 58999987766543 22 22234567899999998887654
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
.+...|++++...+ ..+.+..+. +.+...+|+|
T Consensus 400 ~g~~~L~~~~~~g~-~~~~l~~~~---g~~~~p~wsp 432 (433)
T PRK04922 400 GGRGVLAAVSTDGR-VRQRLVSAD---GEVREPAWSP 432 (433)
T ss_pred CCceEEEEEECCCC-ceEEcccCC---CCCCCCccCC
Confidence 34667999998544 344444333 4556666765
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=3.8e-12 Score=128.13 Aligned_cols=272 Identities=13% Similarity=0.126 Sum_probs=194.3
Q ss_pred CCCcEEEEEcCCCce-EEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 334 SSSPMSMDFHPVQHT-LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~-llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
...|+.++|--|++. ++...+.|..+.......+..... +||+.. ......+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence 447888888877654 333333666677777666655542 233221 33345666666654 34677
Q ss_pred EEECCCEEEEEEeeCCcccc-eeEEEeccccCeeEEEEcCCCCceEEEEeeCC--CcEEEEeCCCCceeEEecCC-----
Q 001367 413 VAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH----- 484 (1091)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~----- 484 (1091)
+|-.+|.+.+|..+.+..-. .+..+..+ ..+..+.-++.... ++++||.. ..+.|||++..+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 78889999999998554211 11123323 45667777776664 67779988 88999999988666554321
Q ss_pred --C--cceEEEeecccCCceEEEEEecCCeEEEEecCCCCce-eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 485 --G--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 485 --~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
. -.++++.|.+..+...|++++.-+.+++||.+.+... ..+.....+++++...|++++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1 2345666765544689999999999999999876544 467778889999999999999999865 566999
Q ss_pred EecCCceeeEE-EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 560 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 560 wd~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
+|.+++..... +.+.. +.|+++..+|..++++++|-|..+||+|+++.+++........ .+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~---lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR---LTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc---ccEEEecC
Confidence 99999998877 77777 8999999999999999999999999999999777766554433 45555544
No 244
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.5e-12 Score=144.52 Aligned_cols=231 Identities=19% Similarity=0.187 Sum_probs=147.7
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCC--CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~d--g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1091)
....+.+..+.+.+.+.+|||||+.++.+...+ ..|.+||+.+|+... +....+.+.+
T Consensus 185 G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~ 244 (427)
T PRK02889 185 GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSA 244 (427)
T ss_pred CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccc
Confidence 344455667778999999999999665444333 459999999887543 2223345678
Q ss_pred EEECCCCCEEEE-EECCCEEEEEEe--eCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC--CCCc
Q 001367 402 VVWSPDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA--VTGS 476 (1091)
Q Consensus 402 l~~spdg~~las-~~~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~--~~~~ 476 (1091)
.+|||||+.|+. .+.++...||.+ .++. .+ .+..+...+....|+|||+. +++++..++...||.+ .++.
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCc
Confidence 999999999875 566776666655 4433 22 34455556678899999995 2333434566666654 4444
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecCC---eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
.. .+..+........| ++||++++..+.++ .|.+||+.+++....... .......|+|||+.|+.....+ +
T Consensus 320 ~~-~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~-g 393 (427)
T PRK02889 320 AQ-RVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQG-G 393 (427)
T ss_pred eE-EEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecC-C
Confidence 32 22222222334556 55778888776554 599999987765433222 2346789999999999887643 3
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCC
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 589 (1091)
...+++.+. .+...+.+..+. +.+...+|+|-
T Consensus 394 ~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~ 425 (427)
T PRK02889 394 RSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGPF 425 (427)
T ss_pred CEEEEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence 566777777 455555555433 45666677763
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=5.9e-10 Score=122.57 Aligned_cols=209 Identities=13% Similarity=0.191 Sum_probs=134.3
Q ss_pred CeeEEEecCCCCEEEEEe--CCeEEEEEccC-ceeEEE---e----------cCCCCCeEEEEEcCCCCcEEEEEe-CCC
Q 001367 803 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGM-DDS 865 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~~~~~la~g~-~dg 865 (1091)
....++++|++++|+++. +|.|.++++.. +..... + ........++.|+| +++++++.. ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345677788888888776 57788888765 333222 1 11235678999999 787777654 334
Q ss_pred eEEEEeccCcc--ee--eeec-cccCCeEEEEECCCCCEEEEEe-CCCcEEEEEcC--CCceeeeeeeeccCCCcCCCCC
Q 001367 866 TILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS 937 (1091)
Q Consensus 866 ~i~iwd~~~~~--~~--~~l~-~h~~~V~~l~~spdg~~las~s-~Dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~ 937 (1091)
.|++|++.... .. ..+. .....-..++|+||++++.... .+++|.++++. ++.......+............
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 21 2222 2334578999999999886655 57889999998 5544433334433221111125
Q ss_pred ceEEEEcCCCCEEEEE--ecCeEEEEEcC--Ccce--eeeeecCCccCEEEEEEeeCCCEEEEEE-cCCcEEEEeC--CC
Q 001367 938 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SN 1008 (1091)
Q Consensus 938 i~~l~fs~dg~~la~~--~d~~i~vwd~~--~~~~--~~~~~~~h~~~v~~v~fs~dg~~l~t~~-~dg~v~iwd~--~~ 1008 (1091)
...++++|||++|.++ ..+.|.+|++. +++. +..+.. .....+.++++|||++|+++. .++.|.+|++ .+
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 7899999999999986 45689999983 2332 222222 244578999999999999887 4568999876 46
Q ss_pred CceEE
Q 001367 1009 LEVQC 1013 (1091)
Q Consensus 1009 ~~~~~ 1013 (1091)
|.+..
T Consensus 326 G~l~~ 330 (345)
T PF10282_consen 326 GKLTP 330 (345)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 66553
No 246
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.46 E-value=2e-10 Score=119.81 Aligned_cols=366 Identities=11% Similarity=0.142 Sum_probs=223.5
Q ss_pred EEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCC
Q 001367 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1091)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 591 (1091)
.+|+..+......+....-++..+++||.|.+|++.... .|.+|+-..+..+..+.. ..|..+.|+|.++
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-----~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~k 84 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-----GVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEK 84 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-----ceEEccccchhheeeeec-----CCceecccCcccc
Confidence 345444444444444456688899999999999987642 399999887775555554 4689999999999
Q ss_pred EEEEEeCC---------------CeEEEEECCCCeeEEEEeCCCCCCCCc-eEEEccCCCEEEEEECCCeEEEEECCCCC
Q 001367 592 QILAAGDD---------------HVIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 592 ~l~~~s~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
+|.+=+.. ..+.+||..+|..+..+.......... -+.|+-+.+++|-. ....++|+++....
T Consensus 85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~ 163 (561)
T COG5354 85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNI 163 (561)
T ss_pred eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCcc
Confidence 99985433 349999999999999887654422233 67889888877755 34578999863221
Q ss_pred eeccccc-ccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccc
Q 001367 656 SVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 734 (1091)
Q Consensus 656 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 734 (1091)
....+.. ....+....++|.+. ...+-.|
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n----------------------------~~~la~~---------------------- 193 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGN----------------------------HDELAYW---------------------- 193 (561)
T ss_pred ccCchhhccccceeeEEecCCCC----------------------------CceEEEE----------------------
Confidence 1111110 012222223322110 0001111
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.|.. .+..+.+++|.++.+.. +.+..+ ....-..+.+.+.|+
T Consensus 194 -------tPEk-----~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~qLkW~~~g~ 235 (561)
T COG5354 194 -------TPEK-----LNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGVQLKWQVLGK 235 (561)
T ss_pred -------cccc-----CCCCcEEEEEEccCCCe----------------------eeeeee----EeecccEEEEecCCc
Confidence 1110 12245566666553321 111111 011112344555555
Q ss_pred EEEEE------------eCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEE--eCCCeEEEEeccCcceeee
Q 001367 815 YLFSA------------SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG--MDDSTILIYNARSSEVISK 880 (1091)
Q Consensus 815 ~la~~------------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g--~~dg~i~iwd~~~~~~~~~ 880 (1091)
++..- +...+.|+++....+.... ...++|...+|.| .++.+++. -.+-.+.++|+... ....
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~ 312 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFY 312 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecc-cCCceeEEecccccceeecccccc-eEEe
Confidence 54431 1256888888744333332 5678999999999 55544443 47789999999854 4333
Q ss_pred eccccCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE----
Q 001367 881 LEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---- 953 (1091)
Q Consensus 881 l~~h~~~V~~l~~spdg~~las~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~---- 953 (1091)
+. ..+=..+.|||.+++++.++-| |.|.+||..+.- .+.....+. ..+.+.|||||.++-+.
T Consensus 313 ~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 313 FP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred cC--CcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCceEEEecCCCc
Confidence 32 3344568999999999998876 579999988733 233233332 24677899999999873
Q ss_pred ---ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCC
Q 001367 954 ---HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 999 (1091)
Q Consensus 954 ---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg 999 (1091)
.|..+.|||+...... ..+.+.|.|.|++..+.+.+.
T Consensus 382 k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 382 KLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 3668999998644332 456678889898888777664
No 247
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.46 E-value=3.2e-13 Score=128.41 Aligned_cols=171 Identities=20% Similarity=0.258 Sum_probs=129.8
Q ss_pred chhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---------HHHHHHHhcCcCHHHHHHHhccCC--CcCCccccch
Q 001367 3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFT--KVDDNRYSTK 71 (1091)
Q Consensus 3 ~~~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~ 71 (1091)
..++|+.|||++||-.+||.++|+.+.+|+|+... -..+|.+|..|+.++|+..++++- .++.+ + .
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n--~-~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN--R-E 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc--h-h
Confidence 45789999999999999999999999999999661 477899999999999999999872 23333 2 2
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCC-ChHHHHHHHHHHHH
Q 001367 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD-ALSARKNMMLELKQ 150 (1091)
Q Consensus 72 ~~~~i~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~-~~~~r~~l~~~l~~ 150 (1091)
+.|.+++|+++|++..+...+|++|+|++|.|.+..+++.++.|..+|.+..++..+.-.. ..- ....|.++-+.++.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~-~~l~~~s~R~kvA~~vN~ 179 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPS-AELLSQSLRQKVASEVNS 179 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcH-HHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999888889999999888876653332110 000 12346666666666
Q ss_pred hhhcCccccccccCCCcchHHHHHHHHHHHHHHHh
Q 001367 151 IIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHV 185 (1091)
Q Consensus 151 ~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~ 185 (1091)
.|-...- . --..+|..||..-+..|..
T Consensus 180 aiL~~~~---~-----~~~~~l~~llk~~~~~~~~ 206 (228)
T KOG2659|consen 180 AILASQE---H-----ESEPKLPFLLKLISWAQEE 206 (228)
T ss_pred HHHHHhc---c-----cccchHHHHHHHHHHHHHH
Confidence 5543211 0 1256888888666666643
No 248
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.4e-11 Score=140.54 Aligned_cols=230 Identities=14% Similarity=0.101 Sum_probs=151.6
Q ss_pred chheeeecccCCCCcEEEEEcCCCceEEEEEc--CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE
Q 001367 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1091)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~fspdg~~llasg~--~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1091)
.....+.+..|...+.+.+|||||++|+.+.. .+..|.+||+.+|+... +..+.+.+.
T Consensus 190 dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~ 249 (435)
T PRK05137 190 DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTF 249 (435)
T ss_pred CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCccc
Confidence 34455667788889999999999996655442 24689999999886542 334566778
Q ss_pred EEEECCCCCEEEEE-ECCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCC--cEEEEeCCC
Q 001367 401 RVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVT 474 (1091)
Q Consensus 401 ~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~--~i~iwd~~~ 474 (1091)
+.+|||||+.|+.. +.++ .|++||+.++... .+..+.......+|+|||+. ++..+ .++ .|.+||+.+
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCC
Confidence 89999999988754 4444 4778888876532 35556666778999999995 44443 333 688889776
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecC---CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
++. +.+..+...+....| +++|+.|+..+.+ ..|.+||+...... .+.. ...+..+.|+|||+.|+..+...
T Consensus 324 ~~~-~~lt~~~~~~~~~~~--SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 324 SNP-RRISFGGGRYSTPVW--SPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFRQTP 398 (435)
T ss_pred CCe-EEeecCCCcccCeEE--CCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEEccC
Confidence 654 344334445556667 4567777776543 35778887554432 2222 23466789999999998766533
Q ss_pred CCc--eEEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 552 EGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 552 ~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
... ..++++|+..+.. +.+.. . ..+...+|+|
T Consensus 399 ~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp 432 (435)
T PRK05137 399 GSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP 432 (435)
T ss_pred CCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence 221 4688889876654 33332 2 3355556665
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=8.3e-10 Score=111.49 Aligned_cols=281 Identities=11% Similarity=0.107 Sum_probs=182.3
Q ss_pred ccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC---ceEEEeecCCcccccccceeeccCCccc
Q 001367 706 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY 782 (1091)
Q Consensus 706 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~ 782 (1091)
+.-|.+|+++......... .........+-++++|+++.|.++..+ |.+.-|.++
T Consensus 15 s~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD------------------- 72 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID------------------- 72 (346)
T ss_pred CCceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc-------------------
Confidence 3567888877332211111 112255678889999999999888765 666666644
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccC-ceeEEE--ecCCCCC----------eEE
Q 001367 783 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS 847 (1091)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 847 (1091)
..+|.......... ...+...++++++|++++++. .|.|.++-++. |..... ...|.+. +..
T Consensus 73 -~~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 73 -PDDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred -CCCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 33333111111111 233448899999999999998 58999999865 433221 1113322 788
Q ss_pred EEEcCCCCcEEEEEeC-CCeEEEEeccCcceeeeec---cccCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCC--Ccee
Q 001367 848 LAFNPHDNNVIAIGMD-DSTILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ 920 (1091)
Q Consensus 848 l~~s~~~~~~la~g~~-dg~i~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~las~s~-Dg~i~vwd~~~--~~~~ 920 (1091)
..|.| ++++|++.+- --.|.+|++..|++...-. .....-+.|+|+|++++.....+ +++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999 8888887652 2379999999886532211 23345788999999999776654 89999999988 4444
Q ss_pred eeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecC--eEEEEEcCC--ccee-eeeecCCccCEEEEEEeeCCCEEEEE
Q 001367 921 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET--HLAIYEAEE--LTCL-KQWFPISSVPISQATFSCDCRMVFTS 995 (1091)
Q Consensus 921 ~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~--~i~vwd~~~--~~~~-~~~~~~h~~~v~~v~fs~dg~~l~t~ 995 (1091)
..+.+..+........+..++..++||++|.++..+ .|.+|.+.. ++.. ......+....+...|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 333444433333333567889999999999997543 677777653 3221 12223335557889999999999988
Q ss_pred EcCC-cEEEEeCC--CCceE
Q 001367 996 FVDG-TLSIHEAS--NLEVQ 1012 (1091)
Q Consensus 996 ~~dg-~v~iwd~~--~~~~~ 1012 (1091)
..++ .|.+|..+ +|++-
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 8764 58888665 44443
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.3e-11 Score=129.93 Aligned_cols=278 Identities=12% Similarity=0.105 Sum_probs=198.3
Q ss_pred CCCCCcc-cccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccc
Q 001367 694 KEDVKPE-ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 772 (1091)
Q Consensus 694 s~~~~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~ 772 (1091)
+|||+++ ++|..--.|++||+.. ..+.+........|.-...+.|-..++....|..|.+..
T Consensus 60 s~DGqY~lAtG~YKP~ikvydlan------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa----------- 122 (703)
T KOG2321|consen 60 SPDGQYLLATGTYKPQIKVYDLAN------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA----------- 122 (703)
T ss_pred cCCCcEEEEecccCCceEEEEccc------ceeeeeecccccceeEEEeccchhhheEeecCceeeehh-----------
Confidence 8888886 5666777899999762 222222222334455555566655566666666665422
Q ss_pred eeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEec-CCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEc
Q 001367 773 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 851 (1091)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 851 (1091)
..|.. ....+ ...-..++++ |...++++|+...|.-++++.|.-+..+....+.+.++..+
T Consensus 123 ------------k~G~h-y~~RI-----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in 184 (703)
T KOG2321|consen 123 ------------KYGRH-YRTRI-----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSIN 184 (703)
T ss_pred ------------hcCee-eeeec-----CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeec
Confidence 11110 01111 1122344554 45567777778889999999999999999888999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEeccCcceeeeec------cccC-----CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee
Q 001367 852 PHDNNVIAIGMDDSTILIYNARSSEVISKLE------GHSK-----RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 920 (1091)
Q Consensus 852 ~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~------~h~~-----~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~ 920 (1091)
+ -..+|++|+.+|.|.+||..+...+..+. .|.+ .|+++.|+.||-.+++|+.+|.|.|||+.+.+.
T Consensus 185 ~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p- 262 (703)
T KOG2321|consen 185 E-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP- 262 (703)
T ss_pred C-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-
Confidence 9 78899999999999999998876555443 2333 499999999999999999999999999998541
Q ss_pred eeeeeeccCCCcCCCCCceEEEEcCC--CCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC
Q 001367 921 TCRSLQTPDGVMTLAPSETHIQFHKD--QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 998 (1091)
Q Consensus 921 ~~~~~~~~~~~~~~~~~i~~l~fs~d--g~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d 998 (1091)
..++..... .+|..+.|-+. +..+++.....++|||-.+|+....... ...+..+|+-|++.+++++-.+
T Consensus 263 --l~~kdh~~e----~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 263 --LLVKDHGYE----LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANES 334 (703)
T ss_pred --eeecccCCc----cceeeecccccCCCceEEecchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCC
Confidence 222222222 36889999765 5567777778899999999998887554 4569999999999999999999
Q ss_pred CcEEEEeCCCCceEEEee
Q 001367 999 GTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 999 g~v~iwd~~~~~~~~~~~ 1016 (1091)
+.+..|=++.....-+|.
T Consensus 335 ~~m~~yyiP~LGPaPrWC 352 (703)
T KOG2321|consen 335 SKMHTYYIPSLGPAPRWC 352 (703)
T ss_pred CcceeEEccccCCCchhh
Confidence 888888877765554443
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.41 E-value=2.5e-09 Score=113.50 Aligned_cols=205 Identities=11% Similarity=0.088 Sum_probs=129.4
Q ss_pred eEEEecCCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC-ccee-e
Q 001367 805 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S 879 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~-~~~~-~ 879 (1091)
..+++||||+++.+.. +..|.+.|+.+++.+.++..+. ...-...++ +. +. +-+.||......+.+ |+.. .
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEe
Confidence 3567888888888765 5789999999999988887533 222222222 22 22 223444444433322 2211 1
Q ss_pred ---eeccccCCeE-EEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCc----CCCCCceEEEEcCCCCEE
Q 001367 880 ---KLEGHSKRVT-GLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRF 950 (1091)
Q Consensus 880 ---~l~~h~~~V~-~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~l~fs~dg~~l 950 (1091)
.+.+-..++. .-.|++ ||+++..... |+|.+-|+.+........+....... -.+....-+++++||+.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1111001100 014455 8888876665 99999998765544333333321110 011344559999999988
Q ss_pred EEEe---c--------CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCC-EEEEEE-cCCcEEEEeCCCCceEEEee
Q 001367 951 LLVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 951 a~~~---d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~-~l~t~~-~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
.+.. . +.|.++|..+++.+..+..+ ..+..++|||||+ +|++.. .++.|.+.|+.+++.+.++.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8732 1 47999999999999987765 4789999999999 777665 57889999999999998774
No 252
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.41 E-value=2.4e-11 Score=120.20 Aligned_cols=336 Identities=14% Similarity=0.187 Sum_probs=205.8
Q ss_pred eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCe
Q 001367 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1091)
.++.++|+. ..++....-|..+.+++.+.|.++++|- .+.++.-..+.... ...+.++.+.++...|++|-.+|+
T Consensus 16 ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 16 LLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred hhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecce
Confidence 445666766 7777777788888999999999999994 45555544443322 246789999999999999999999
Q ss_pred EEEEECCCC----CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcc
Q 001367 646 IKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 721 (1091)
Q Consensus 646 i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~ 721 (1091)
+.-+.+... ...+....|...+..+-|+ .....+++.+.|..+
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~---------------------~~~e~V~s~~~dk~~------------ 138 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFS---------------------LTHEWVLSTGKDKQF------------ 138 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEec---------------------CCceeEEEeccccce------------
Confidence 998876543 3334444566666655552 223344444433221
Q ss_pred cceeecCCccccccEEEEEEecC---CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCC
Q 001367 722 CQSLLLPSKVKANKISRLTYNNG---GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 798 (1091)
Q Consensus 722 ~~~~~~~~~~~~~~i~~~~~s~d---g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1091)
.-.++-.+ |.++..+-.
T Consensus 139 ---------------~~hc~e~~~~lg~Y~~~~~~--------------------------------------------- 158 (404)
T KOG1409|consen 139 ---------------AWHCTESGNRLGGYNFETPA--------------------------------------------- 158 (404)
T ss_pred ---------------EEEeeccCCcccceEeeccC---------------------------------------------
Confidence 00011000 001100000
Q ss_pred CCCCCeeEEEecCCCCEEEEEe-CCeEEEE--EccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc
Q 001367 799 NSQEAVPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~~la~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~ 875 (1091)
+++.+ |-.+...|. .|.|.+- .......+.++.+|...+++++|.+ ...+|.+|..|..+.+||+...
T Consensus 159 ------t~~~~--d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 159 ------SALQF--DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred ------CCCce--eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCC
Confidence 00000 000122222 2333332 2245567788999999999999999 8899999999999999999866
Q ss_pred ce-eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec-------------------------cC
Q 001367 876 EV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT-------------------------PD 929 (1091)
Q Consensus 876 ~~-~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~-------------------------~~ 929 (1091)
+- ...+.+|.+.|..+...+--+.|.+++.||.|.+|+.+.........+.. ..
T Consensus 230 ~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~ 309 (404)
T KOG1409|consen 230 KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQ 309 (404)
T ss_pred cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhh
Confidence 54 46788999999999998888999999999999999987643222110000 00
Q ss_pred CCcCCC-CCceEEEEcCCCCEEEEEecCeEEEEEcCCcce----eeeeecCC--ccCEEEEEEeeCCCEEEEEEcCCcEE
Q 001367 930 GVMTLA-PSETHIQFHKDQTRFLLVHETHLAIYEAEELTC----LKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLS 1002 (1091)
Q Consensus 930 ~~~~~~-~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~----~~~~~~~h--~~~v~~v~fs~dg~~l~t~~~dg~v~ 1002 (1091)
-|-... ..+...+-|.-..+...+.+-.+++.|...... ...+...| ...|+.+.+-.+-.+|+|+|.|..|.
T Consensus 310 h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~ 389 (404)
T KOG1409|consen 310 HHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIK 389 (404)
T ss_pred hhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEE
Confidence 000000 111112222222222334455566655321110 01122234 45788999998889999999999999
Q ss_pred EEeCCC
Q 001367 1003 IHEASN 1008 (1091)
Q Consensus 1003 iwd~~~ 1008 (1091)
|||+.+
T Consensus 390 iwd~~~ 395 (404)
T KOG1409|consen 390 IWDVRS 395 (404)
T ss_pred EEechh
Confidence 999865
No 253
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.5e-10 Score=118.87 Aligned_cols=317 Identities=13% Similarity=0.175 Sum_probs=195.4
Q ss_pred EEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-----------CCC
Q 001367 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DDH 600 (1091)
Q Consensus 532 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-----------~dg 600 (1091)
-+-+.|||.|.+|++-...| |.+|--.+-..++.|.. ..|.-+.|||..++|++-+ +..
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 45689999999999987533 89998776666666653 4688999999999999854 225
Q ss_pred eEEEEECCCCeeEEEEeCCCC-CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccc
Q 001367 601 VIKIWDMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1091)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1091)
.++|||+.+|.....+..... ...-.-+.||.|++++|.... ..|.||+...-..+..-..
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl----------------- 344 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL----------------- 344 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc-----------------
Confidence 799999999999988876322 223356789999999998877 4688887664222111000
Q ss_pred cccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEE
Q 001367 680 GAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 759 (1091)
Q Consensus 680 ~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~v 759 (1091)
.-..|..+.|+|.+..|+--..
T Consensus 345 ----------------------------------------------------ki~gIr~FswsP~~~llAYwtp------ 366 (698)
T KOG2314|consen 345 ----------------------------------------------------KISGIRDFSWSPTSNLLAYWTP------ 366 (698)
T ss_pred ----------------------------------------------------CCccccCcccCCCcceEEEEcc------
Confidence 1234555666666553332211
Q ss_pred eecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEec
Q 001367 760 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM 839 (1091)
Q Consensus 760 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~ 839 (1091)
.+.. .. ..+.+..+.+++.+++..
T Consensus 367 -------------------------e~~~-----------~p--------------------arvtL~evPs~~~iRt~n 390 (698)
T KOG2314|consen 367 -------------------------ETNN-----------IP--------------------ARVTLMEVPSKREIRTKN 390 (698)
T ss_pred -------------------------cccC-----------Cc--------------------ceEEEEecCccceeeecc
Confidence 1110 01 112233333333333332
Q ss_pred CCCCCeEEEEEcCCCCcEEEEE----------eCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeC---C
Q 001367 840 PPSPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG---D 906 (1091)
Q Consensus 840 ~~~~~i~~l~~s~~~~~~la~g----------~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~---D 906 (1091)
-+.-.-..+-|-. .|.+|+.- +.=..+.|+.+......-....-...|...+|-|.|..+++.+. .
T Consensus 391 lfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 391 LFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred ceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccc
Confidence 2222222334444 44455432 22225667766654432222224567899999999988876654 3
Q ss_pred CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE----ecCeEEEEEcCCcceeeeeecCCccCEEE
Q 001367 907 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVPISQ 982 (1091)
Q Consensus 907 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 982 (1091)
.++.+|.+++.. .....+..+... ....+.|||.|++++++ ..|.+..||..-..+...-...| ...+.
T Consensus 470 ~tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~ 542 (698)
T KOG2314|consen 470 NTVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATE 542 (698)
T ss_pred cceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-ccccc
Confidence 578899888522 122334444331 35789999999999873 46789999987534333322333 24577
Q ss_pred EEEeeCCCEEEEEEcC
Q 001367 983 ATFSCDCRMVFTSFVD 998 (1091)
Q Consensus 983 v~fs~dg~~l~t~~~d 998 (1091)
+.|.|.|+|++|++.-
T Consensus 543 veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 543 VEWDPTGRYVVTSSSS 558 (698)
T ss_pred ceECCCCCEEEEeeeh
Confidence 8999999999998864
No 254
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=4.4e-10 Score=119.02 Aligned_cols=336 Identities=13% Similarity=0.133 Sum_probs=206.6
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE-----eC-----
Q 001367 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GD----- 598 (1091)
Q Consensus 529 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-----s~----- 598 (1091)
..++...+++++|++++.+. +..+.|++..++..+..... ..+..+.|+|.+.++.+- ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~ 103 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS 103 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence 34567889999999999876 44589999888864333332 358899999999988762 12
Q ss_pred CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccc
Q 001367 599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1091)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1091)
.-.+.+|+.+++.....+...... -++..|+.|..+.+ --..+.+++|+..+.+. .....+...++.+.++|.+..
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~-~~~kl~~~~i~~f~lSpgp~~ 179 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAA-RLVSNEVQFYDLGSFKT-IQHKLSVSGITMLSLSPGPEP 179 (566)
T ss_pred CCceeeeeeccceehhheehhhhc--Ccccccccchhhhh-hhhcceEEEEecCCccc-eeeeeeccceeeEEecCCCCC
Confidence 235779999996666555544332 25788998876443 33447899999887322 223344566777777654322
Q ss_pred ccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEE
Q 001367 679 TGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 758 (1091)
Q Consensus 679 ~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~ 758 (1091)
..+.. -..-..+.-..+++|........+ .+....- -...=..+.|.+-|..|+.....
T Consensus 180 ~~vAv--------------yvPe~kGaPa~vri~~~~~~~~~~--~~a~ksF-Fkadkvqm~WN~~gt~LLvLast---- 238 (566)
T KOG2315|consen 180 PFVAV--------------YVPEKKGAPASVRIYKYPEEGQHQ--PVANKSF-FKADKVQMKWNKLGTALLVLAST---- 238 (566)
T ss_pred ceEEE--------------EccCCCCCCcEEEEeccccccccc--hhhhccc-cccceeEEEeccCCceEEEEEEE----
Confidence 11100 001123444668888765222111 1110000 01112345677766654433221
Q ss_pred EeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe---CCeEEEEEccCceeE
Q 001367 759 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTI 835 (1091)
Q Consensus 759 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~ 835 (1091)
|++.... ..-...++.+.+.. |. -....+. ..++|.++.|+|+|+-+++.. -.++.|||+. +..+
T Consensus 239 --dVDktn~----SYYGEq~Lyll~t~-g~-s~~V~L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v 306 (566)
T KOG2315|consen 239 --DVDKTNA----SYYGEQTLYLLATQ-GE-SVSVPLL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPV 306 (566)
T ss_pred --eecCCCc----cccccceEEEEEec-Cc-eEEEecC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEe
Confidence 0000000 00011122223333 22 1222222 478999999999999888776 3789999976 4555
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEEeCC---CeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeC------C
Q 001367 836 LTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG------D 906 (1091)
Q Consensus 836 ~~~~~~~~~i~~l~~s~~~~~~la~g~~d---g~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~------D 906 (1091)
..+ ..++=.++-|+| .|++|+.++-+ |.+.|||+.+.+++..+..-.. +-+.|+|||.+++|++. |
T Consensus 307 ~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvd 381 (566)
T KOG2315|consen 307 FDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVD 381 (566)
T ss_pred EeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEec
Confidence 444 456667899999 78888877654 7999999999998888875443 45799999999998874 6
Q ss_pred CcEEEEEcCC
Q 001367 907 AQIFVWDVDG 916 (1091)
Q Consensus 907 g~i~vwd~~~ 916 (1091)
+.++||+..+
T Consensus 382 Ng~KiwhytG 391 (566)
T KOG2315|consen 382 NGIKIWHYTG 391 (566)
T ss_pred CCeEEEEecC
Confidence 7799999987
No 255
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=5e-11 Score=117.82 Aligned_cols=154 Identities=12% Similarity=0.191 Sum_probs=107.3
Q ss_pred EEEEEcCCCCcEEEEEeC----------CCeEEEEeccC-cceeeeecc-ccCCeEEEEECCCCCEEEEE--eCCCcEEE
Q 001367 846 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV 911 (1091)
Q Consensus 846 ~~l~~s~~~~~~la~g~~----------dg~i~iwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~las~--s~Dg~i~v 911 (1091)
..+.|+| .|.+|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577888 6665554332 13455555532 233344432 44579999999999987654 35679999
Q ss_pred EEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe----cCeEEEEEcCCcceeeeeecCCccCEEEEEEee
Q 001367 912 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC 987 (1091)
Q Consensus 912 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~----d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~ 987 (1091)
||++.. .+..+.. ..+..+.|||+|++|+++. .|.|.+||..+.+.+.... ...++.++|||
T Consensus 88 yd~~~~------~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKGK------KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---HSDATDVEWSP 153 (194)
T ss_pred EcCccc------EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---cCcEEEEEEcC
Confidence 999742 2222221 1467899999999999842 4679999999888877642 33578999999
Q ss_pred CCCEEEEEEc------CCcEEEEeCCCCceEEEe
Q 001367 988 DCRMVFTSFV------DGTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 988 dg~~l~t~~~------dg~v~iwd~~~~~~~~~~ 1015 (1091)
||++++++.. |..++||+.. |+++.+.
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 9999998875 6889999985 6665444
No 256
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.38 E-value=1.1e-09 Score=116.29 Aligned_cols=269 Identities=14% Similarity=0.140 Sum_probs=169.6
Q ss_pred CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC----------CCEEEEEEee
Q 001367 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH 426 (1091)
Q Consensus 357 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~----------d~~i~iwd~~ 426 (1091)
++|.+.|..+++.+.... .|. .-..+ +||||+.|.++.. +..|.+||+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~------------------~G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD------------------GGF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEE------------------ccC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 889999999988776421 111 11224 9999999988755 6789999999
Q ss_pred CCcccceeEEEec--c---ccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceE
Q 001367 427 GGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501 (1091)
Q Consensus 427 ~~~~~~~~~~~~~--h---~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 501 (1091)
+.+.+..+. +.. + ...-..++++|||+.+++.--+.+..|.+.|+.+++.+.++...... ..+...++ .
T Consensus 86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~---~vy~t~e~-~- 159 (352)
T TIGR02658 86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY---HIFPTAND-T- 159 (352)
T ss_pred cCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc---EEEEecCC-c-
Confidence 987665331 111 1 12344789999999533333345899999999999999888642211 11111111 1
Q ss_pred EEEEecCCeEEEEecCCCCceee-----ecCCCCcE-EEEEEcC-CCCEEEEEecCCCCceEEEEEecCCc-----eeeE
Q 001367 502 IFSISVDGKIKAWLYDSLGARVD-----YDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKR 569 (1091)
Q Consensus 502 l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i-~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~ 569 (1091)
...-+.||......++....... +.....++ ..-.|++ +|++++... .+.|++.|+... ....
T Consensus 160 ~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~ 234 (352)
T TIGR02658 160 FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIE 234 (352)
T ss_pred cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceee
Confidence 12333455544443333222111 11100010 0013455 888887764 367999995443 2222
Q ss_pred EEeccc----ccccceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC
Q 001367 570 TYQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1091)
Q Consensus 570 ~~~~~~----~~~~~v~~v~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1091)
.+.... .....+.-++++++++++++.. ..+.|.++|..+++.+..+.... .+..++++||++
T Consensus 235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgk 311 (352)
T TIGR02658 235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAK 311 (352)
T ss_pred eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCC
Confidence 222110 1123445599999999998843 22579999999999999988653 478999999999
Q ss_pred -EEEEEE-CCCeEEEEECCCCCeeccc
Q 001367 636 -LLAVIA-NENRIKILETPESNSVDAA 660 (1091)
Q Consensus 636 -~l~~~~-~dg~i~iwd~~~~~~~~~~ 660 (1091)
+|++.. .++.|.++|..+++.+..+
T Consensus 312 p~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 312 PLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 777766 4788999999999888776
No 257
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.3e-10 Score=122.01 Aligned_cols=316 Identities=11% Similarity=0.139 Sum_probs=201.2
Q ss_pred CCCCCCcchhhhccccc----CCcccCCCchheeeecccCCCCcEEEEEcCCCceEEEEEcC-----------CCcEEEE
Q 001367 298 PDYSPKSSLKKEMFQSF----GETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN-----------VGDTGLW 362 (1091)
Q Consensus 298 ~~fsP~~~~~~~~~~~~----~~~~~~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~-----------dg~i~iW 362 (1091)
.-|||.+.++..+...- +-... ..++. ..|. .|..+.|||+.+|| +|=+. ...++||
T Consensus 216 v~wSP~GTYL~t~Hk~GI~lWGG~~f-----~r~~R-F~Hp-~Vq~idfSP~EkYL-VT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQGIALWGGESF-----DRIQR-FYHP-GVQFIDFSPNEKYL-VTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred EEecCCceEEEEEeccceeeecCccH-----HHHHh-ccCC-CceeeecCCccceE-EEecCCccccCcccCCCceEEEE
Confidence 35778887776554321 11111 11111 1355 89999999999954 65442 1569999
Q ss_pred EcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEecccc
Q 001367 363 DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG 442 (1091)
Q Consensus 363 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~ 442 (1091)
|+.+|...+.+.+ +.+....-.-+.||.|++|+|--..+ +|.||+..+-..+.. ..+ .-.
T Consensus 288 DI~tG~lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl--ki~ 347 (698)
T KOG2314|consen 288 DIATGLLKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL--KIS 347 (698)
T ss_pred Eccccchhcceec----------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc--CCc
Confidence 9999998875332 11222222347899999999988775 499999876332211 011 224
Q ss_pred CeeEEEEcCCCCceEEEEeeC-----CCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEe----------c
Q 001367 443 NVNDLAFSAPCKQISVITCGD-----DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------V 507 (1091)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~ 507 (1091)
.|....|+|.+. +|+--.. -..+.+-.+.+++.+++-.-|. |..+.++...+|.+|..-- .
T Consensus 348 gIr~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 348 GIRDFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred cccCcccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccce
Confidence 688899999988 5554332 2356677777777777655443 4455555677777776532 1
Q ss_pred CCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC-c---eeeEEEecccccccceEE
Q 001367 508 DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-G---AIKRTYQGLQLQHNSVSV 583 (1091)
Q Consensus 508 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~---~~~~~~~~~~~~~~~v~~ 583 (1091)
-..+.|+.++..........-...|...+|-|.|..+++.+.+. ...++.+|.+.+ . +++..+.. ...+.
T Consensus 424 f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~-~k~tvsfY~~e~~~~~~~lVk~~dk-----~~~N~ 497 (698)
T KOG2314|consen 424 FSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNT-VKNTVSFYAVETNIKKPSLVKELDK-----KFANT 497 (698)
T ss_pred EeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccc-cccceeEEEeecCCCchhhhhhhcc-----cccce
Confidence 12356666666555554444556788999999999888776543 366788887763 2 23333332 45778
Q ss_pred EEEcCCCCEEEEE---eCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC------CCeEEEEECCC
Q 001367 584 VHFDTAKDQILAA---GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPE 653 (1091)
Q Consensus 584 v~~~~~~~~l~~~---s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iwd~~~ 653 (1091)
+.|+|.|++++.+ |..|.+.++|+.-......- ...+ ...+.+.|.|.|+|+++++. |...++|+...
T Consensus 498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EEEcCCCcEEEEEEecccccceEEEecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 9999999999885 46789999998753322221 1122 24578999999999999876 44456666653
No 258
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=9e-09 Score=113.24 Aligned_cols=249 Identities=15% Similarity=0.208 Sum_probs=161.4
Q ss_pred CccEEEEEECCCCCEEEEEEC----CCEEEEEEeeCC-cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 396 GVSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~----d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
......++++|++++|.++.. ++.|..|++... ..+...............++++|+++. ++++...+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 356778999999999999876 569999999875 334433333323445678999999994 33344468999999
Q ss_pred eCCC-CceeEE---ec----------CCCcceEEEeecccCCceEEEEEe-cCCeEEEEecCCCCc-e---ee-ecCCCC
Q 001367 471 DAVT-GSRTYS---FE----------GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA-R---VD-YDAPGL 530 (1091)
Q Consensus 471 d~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~-~---~~-~~~~~~ 530 (1091)
++.. |..... +. .......++.+ +++++++++.. ....|.+|+++.... + .. ......
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9987 433322 21 11234556777 45666666654 445799999987662 2 12 223455
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCceEEEEEecC--Ccee--eEEEeccc---ccccceEEEEEcCCCCEEEEEe-CCCeE
Q 001367 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG-DDHVI 602 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~--~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~s-~dg~i 602 (1091)
....++|+|+++++++... ..+.|.++++. ++.. +....... ........++++|||++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 6789999999999988764 35668888777 4432 22222211 0112578899999999998865 67789
Q ss_pred EEEECC--CCe--eEEEEeCCCCCCCCceEEEccCCCEEEEEEC-CCeEEEEECC
Q 001367 603 KIWDMN--KVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETP 652 (1091)
Q Consensus 603 ~iwd~~--~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~ 652 (1091)
.+|+++ +++ .+..+...+. ....++++|+|++|+++.. ++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999983 333 3344443332 3588999999999998875 6789999764
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=5.4e-10 Score=125.77 Aligned_cols=227 Identities=13% Similarity=0.100 Sum_probs=141.0
Q ss_pred ecCCCccEEEEEECCCCCEEE---EEECC--CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC---
Q 001367 392 VRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--- 463 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~la---s~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~--- 463 (1091)
+......+.+-+|||||+.++ +...+ ..|.+.++.+|+..+ +....+.....+|||||+++ +++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCC
Confidence 334556677889999998633 33333 368888888876432 33344455678999999952 333322
Q ss_pred -CCcEEEEeCCCC---ceeEEecCCCcceEEEeecccCCceEEEEEe-cCCeEEEEe--cCC-CCceeeecCCCCcEEEE
Q 001367 464 -DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWL--YDS-LGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 464 -d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd--~~~-~~~~~~~~~~~~~i~~~ 535 (1091)
+..+.+|++.++ +..+....+.......+| ++||+.|+..+ .+|...+|. ++. +.....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 333455777653 333333233333455667 55777776655 466555554 432 22233344444566788
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCee
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQL 612 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~---dg~i~iwd~~~~~~ 612 (1091)
.|+|||++|+..... .+...|++||+.+++....... . ..+....|+|||+.|+.... ...|+++|+.+++.
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999999999887653 2356799999998876544332 2 34667899999998876442 45788999988776
Q ss_pred EEEEeCCCCCCCCceEEEccC
Q 001367 613 LTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
.......+ .+...+|+|-
T Consensus 408 ~~Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 408 RKIVIGSG---EKRFPSWGAF 425 (428)
T ss_pred EEeecCCC---cccCceecCC
Confidence 55443222 3566778774
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2.5e-10 Score=128.49 Aligned_cols=235 Identities=11% Similarity=0.050 Sum_probs=144.5
Q ss_pred eeecccCCCCcEEEEEcCCCce--EEEEEcCCC--cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEE
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHT--LLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~--llasg~~dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 402 (1091)
.+.|..+...+..-+|||||+. ++++...+| .|.+.++.+|+... +....+.....
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p 236 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMP 236 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccce
Confidence 3445555557788899999975 333544443 57777888876543 22233455678
Q ss_pred EECCCCCEEEEEEC-CC----EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE--eCCC-
Q 001367 403 VWSPDGSLLGVAYS-KH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DAVT- 474 (1091)
Q Consensus 403 ~~spdg~~las~~~-d~----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw--d~~~- 474 (1091)
+|||||++||..+. +| .+.+|++.++..-.......++.......+|+|||+. ++++...+|...+| ++..
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECccc
Confidence 99999999998653 22 3444777653211111112223334567899999995 23333456655555 4432
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecC---CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+.....+..+...+....| ++||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+.....
T Consensus 316 g~~~~~lt~~~~~~~~p~w--SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~- 391 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAW--SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN- 391 (428)
T ss_pred ccceEEeccCCCCccceeE--CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC-
Confidence 3334445445555666677 4567777766543 368999998776554332 23456778999999998876543
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCC
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~ 590 (1091)
.+...|+++|+.+++......+ . +.+...+|+|..
T Consensus 392 ~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 392 SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP 426 (428)
T ss_pred CCCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence 3467799999988876544432 2 345667777743
No 261
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.6e-10 Score=116.66 Aligned_cols=251 Identities=10% Similarity=0.126 Sum_probs=183.0
Q ss_pred CCccEEEEEECCCCC--EEEEEECCCEEEEEEeeCCccccee---EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEE
Q 001367 395 PGVSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQ---LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1091)
Q Consensus 395 h~~~V~~l~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~---~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1091)
....|+.++|.-|++ .|..++.+..+....++........ .......++|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 446788888886653 4555557777887777766544321 1233455677777665 44 4888999999999
Q ss_pred EeCCCCc----eeEEecCCCcceEEEeecccCCceEEEEEecC--CeEEEEecCCCCceeeecCCCC---------cEEE
Q 001367 470 WDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGL---------GCTR 534 (1091)
Q Consensus 470 wd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~---------~i~~ 534 (1091)
|..+.+. .+..+..+ ..+..+.-++. ...++++|+.. ..+++||++..+.++.-+.... .++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~-~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDT-DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCC-CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9987443 23333323 33444433222 33467779998 8899999998866654433222 4678
Q ss_pred EEEcCC--CCEEEEEecCCCCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001367 535 MAYSAN--GRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 535 ~~~s~d--~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1091)
+.|-+. ...+++++. -+++++||.+.+ +++..+.... .++.++...|+++++++|..-|.+..||.++++
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E---~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLE---NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEecccc---CcceeeeecCCCcEEEEecccchhheecccCce
Confidence 889887 888998875 667999999865 4666776655 899999999999999999999999999999999
Q ss_pred eEEE-EeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccc
Q 001367 612 LLTT-IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1091)
Q Consensus 612 ~~~~-~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 660 (1091)
.... +.+-. ..+.++..+|.++++++++-|..++|+|+.+.+.+...
T Consensus 281 l~g~~~kg~t--Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 281 LLGCGLKGIT--GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred eeccccCCcc--CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 8876 44433 36899999999999999999999999999986555443
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.9e-08 Score=101.91 Aligned_cols=302 Identities=12% Similarity=0.155 Sum_probs=186.2
Q ss_pred CCeEEEEecCCCCcee---eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE--EecCCceeeEEEecccccccceE
Q 001367 508 DGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE--WNESEGAIKRTYQGLQLQHNSVS 582 (1091)
Q Consensus 508 dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i--wd~~~~~~~~~~~~~~~~~~~v~ 582 (1091)
++-|.+|++++..... .........+-++|+|+++.|.++...++ .+.|.- ||-.+|++...-.... ...+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-~ggvaay~iD~~~G~Lt~ln~~~~-~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-EGGVAAYRIDPDDGRLTFLNRQTL-PGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-cCcEEEEEEcCCCCeEEEeecccc-CCCCCe
Confidence 4669999998544333 22334556788999999999999877533 344444 4544465433222111 124458
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEECCC-CeeEEE---EeCCCC-------CCCCceEEEccCCCEEEEEEC-CCeEEEE
Q 001367 583 VVHFDTAKDQILAAG-DDHVIKIWDMNK-VQLLTT---IDAGGG-------LPENPRICFNKNGTLLAVIAN-ENRIKIL 649 (1091)
Q Consensus 583 ~v~~~~~~~~l~~~s-~dg~i~iwd~~~-~~~~~~---~~~~~~-------~~~v~~v~~s~~~~~l~~~~~-dg~i~iw 649 (1091)
.+++++++++++++. ..|.|.++-+.. |.+... +...+. .+.+....+.|++++|++..- .-.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 899999999999976 568899998865 444322 221111 123678889999999888754 2468888
Q ss_pred ECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCC
Q 001367 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 729 (1091)
Q Consensus 650 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~ 729 (1091)
++..+.....-.. . +
T Consensus 173 ~~~dg~L~~~~~~-------------------------------------~--------------------------v-- 187 (346)
T COG2706 173 DLDDGKLTPADPA-------------------------------------E--------------------------V-- 187 (346)
T ss_pred EcccCcccccccc-------------------------------------c--------------------------c--
Confidence 8875532211000 0 0
Q ss_pred ccccccEEEEEEecCCCeEEEeec-CceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001367 730 KVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 808 (1091)
Q Consensus 730 ~~~~~~i~~~~~s~dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 808 (1091)
.....-+.++|+|++++.....+ +++|.+|.++.... +... ++..+ .+...+ .......++.
T Consensus 188 -~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g----~~~~---lQ~i~------tlP~dF---~g~~~~aaIh 250 (346)
T COG2706 188 -KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG----KFEE---LQTID------TLPEDF---TGTNWAAAIH 250 (346)
T ss_pred -CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc----eEEE---eeeec------cCcccc---CCCCceeEEE
Confidence 02345678999999998877776 89999999765311 1000 00000 111111 2355678899
Q ss_pred ecCCCCEEEEEeC--CeEEEEEccC--cee--EEEecCCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEecc--Ccceee
Q 001367 809 LSKNDAYLFSASG--GVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNAR--SSEVIS 879 (1091)
Q Consensus 809 ~s~dg~~la~~~d--g~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-~i~iwd~~--~~~~~~ 879 (1091)
+++||++|.++.. +.|.+|.+.. +++ ......+....+...|++ ++++|+++..++ .|.+|..+ +|++..
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 9999999999873 5688887763 332 222233444578899999 888888877654 78887664 455433
Q ss_pred eec-cccCCeEEEEEC
Q 001367 880 KLE-GHSKRVTGLVFS 894 (1091)
Q Consensus 880 ~l~-~h~~~V~~l~~s 894 (1091)
... .......||.|.
T Consensus 330 ~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 330 LGRYAVVPEPVCVKFL 345 (346)
T ss_pred cccccCCCCcEEEEEc
Confidence 222 244456667664
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.6e-10 Score=130.51 Aligned_cols=228 Identities=13% Similarity=0.093 Sum_probs=143.8
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCC--CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~d--g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
..+.+..+...+...+|||||++|+.+...+ ..|.+||+.+|+... +....+.+...+
T Consensus 190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~ 249 (430)
T PRK00178 190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPA 249 (430)
T ss_pred CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeE
Confidence 3455666777899999999999776555443 368899998886543 222334455789
Q ss_pred ECCCCCEEEEE-ECCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC--cEEEEeCCCCcee
Q 001367 404 WSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT 478 (1091)
Q Consensus 404 ~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~ 478 (1091)
|||||++|+.. +.++ .|++||+.+++.. .+..+........|+|||+. ++++...++ .|.++|+.+++..
T Consensus 250 ~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 250 WSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEE
Confidence 99999998854 3444 6888899887532 34455556777899999995 233333333 5778888877643
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecC-C--eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
. +...........| ++++..++..+.+ + .|.+||+.++........ .......|+|||+.++..... .+..
T Consensus 325 ~-lt~~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g~~ 398 (430)
T PRK00178 325 R-VTFVGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QGRG 398 (430)
T ss_pred E-eecCCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CCce
Confidence 3 2211122233455 4566777666543 3 478888887654332221 222356899999999887653 3456
Q ss_pred EEEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
.+++++...+ ..+.+.... +.+...+|+|
T Consensus 399 ~l~~~~~~g~-~~~~l~~~~---g~~~~p~ws~ 427 (430)
T PRK00178 399 VLMLVSINGR-VRLPLPTAQ---GEVREPSWSP 427 (430)
T ss_pred EEEEEECCCC-ceEECcCCC---CCcCCCccCC
Confidence 7888887543 333443322 4455566665
No 264
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=8.1e-10 Score=126.52 Aligned_cols=223 Identities=15% Similarity=0.118 Sum_probs=142.0
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECC---CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC--c
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 466 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~ 466 (1091)
+..+...+...+|||||++|+..+.+ ..|.+|++.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999887644 379999998875422 3333445567899999995 333454454 6
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEec-CC--eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCE
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 543 (1091)
|.+||+.+++.. .+..+........|+ +|+..++..+. +| .|.++++.+++.... ...........|+|||++
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKT 344 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 888899887643 455555555566674 46666655543 33 477777766554332 222223345789999999
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeEEEEeCCC
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~ 620 (1091)
++..... ++...|.++|+.+++....... . ......|+|+|+.++..+.+ ..+++++...+ ....+....
T Consensus 345 i~~~~~~-~~~~~l~~~dl~tg~~~~lt~~-~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~ 417 (430)
T PRK00178 345 LVMVHRQ-DGNFHVAAQDLQRGSVRILTDT-S----LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQ 417 (430)
T ss_pred EEEEEcc-CCceEEEEEECCCCCEEEccCC-C----CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCC
Confidence 9887643 2345699999988865332222 1 12245899999999886643 35777777543 333443322
Q ss_pred CCCCCceEEEcc
Q 001367 621 GLPENPRICFNK 632 (1091)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1091)
+ .+...+|+|
T Consensus 418 g--~~~~p~ws~ 427 (430)
T PRK00178 418 G--EVREPSWSP 427 (430)
T ss_pred C--CcCCCccCC
Confidence 2 355666765
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=7.5e-10 Score=125.79 Aligned_cols=223 Identities=15% Similarity=0.121 Sum_probs=140.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECC---CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCc--
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~-- 466 (1091)
+..+...+.+.+|||||++|+..+.+ ..|++||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34467789999999999999987543 368899998875322 2222334457899999995 3344555664
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEec-CCe--EEEEecCCCCceeeecCCCCcEEEEEEcCCCCE
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 543 (1091)
|.+||+.+++. ..+..+.......+|+ +|++.++..+. ++. |.++|+.+++... +..........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wS--pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWH--PDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCE
Confidence 78889887764 4454455555667775 46666655543 444 5556666554333 2222223345789999999
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCeeEEEEeCCC
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DH--VIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~ 620 (1091)
++..+.. .+...|.++|+.+++... +.... ......|+|+|+.++..+. ++ .+++++. +|.....+....
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence 9887643 234568888988886533 22211 1123479999999887553 33 3777787 455555554432
Q ss_pred CCCCCceEEEcc
Q 001367 621 GLPENPRICFNK 632 (1091)
Q Consensus 621 ~~~~v~~v~~s~ 632 (1091)
+ .+...+|+|
T Consensus 437 g--~~~~p~Wsp 446 (448)
T PRK04792 437 G--EVKSPAWSP 446 (448)
T ss_pred C--CcCCCccCC
Confidence 2 356677776
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.9e-10 Score=130.71 Aligned_cols=227 Identities=15% Similarity=0.103 Sum_probs=140.6
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCC--cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+.+..+...+.+.+|||||++++.+...++ .|.+||+.+|+.... ....+.....+|
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~w 269 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRF 269 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeE
Confidence 3556666778999999999997655544443 588889988865321 111223446899
Q ss_pred CCCCCEEEEE-ECCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC--cEEEEeCCCCceeE
Q 001367 405 SPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTY 479 (1091)
Q Consensus 405 spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~ 479 (1091)
||||+.|+.. +.++ .|++||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++...
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE
Confidence 9999988764 4555 4778888876532 34445556778999999995 333343344 57777887776533
Q ss_pred EecCCCcceEEEeecccCCceEEEEEec-CCe--EEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 480 SFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
+..........+| ++||++++..+. ++. |.++|+.++..... ... .......|+|||+.++..... .+...
T Consensus 345 -Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~~-~~d~~ps~spdG~~I~~~~~~-~g~~~ 418 (448)
T PRK04792 345 -LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQVL-TST-RLDESPSVAPNGTMVIYSTTY-QGKQV 418 (448)
T ss_pred -EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEEc-cCC-CCCCCceECCCCCEEEEEEec-CCceE
Confidence 2212222334456 456667766554 443 55567666554332 221 122345799999999877653 34567
Q ss_pred EEEEecCCceeeEEEecccccccceEEEEEcC
Q 001367 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
+++++. +|...+.+.... +.+...+|+|
T Consensus 419 l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp 446 (448)
T PRK04792 419 LAAVSI-DGRFKARLPAGQ---GEVKSPAWSP 446 (448)
T ss_pred EEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence 888887 455555555433 4566667776
No 267
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=1.7e-10 Score=114.18 Aligned_cols=263 Identities=13% Similarity=0.199 Sum_probs=174.4
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCc---eeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK---LFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
..+-|.+|.|..+|. +||+|..+|.|.++.-..... .....++..+ ..|...---.-...|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe-----pEFDYLkSleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE-----PEFDYLKSLEIEEKINKIRWLDDGN 97 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeecccccccceeeeeeeeccC-----cccchhhhhhhhhhhhhceecCCCC
Confidence 356899999999999 679999999999997543221 1110110000 1111100111246789999998654
Q ss_pred --EEEEEECCCEEEEEEeeCCcccc------------------e--------------eEE-EeccccCeeEEEEcCCCC
Q 001367 410 --LLGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCK 454 (1091)
Q Consensus 410 --~las~~~d~~i~iwd~~~~~~~~------------------~--------------~~~-~~~h~~~v~~~~~s~d~~ 454 (1091)
.++..+.|.+|++|.+....... . ... -.+|..-|+++.++.|+.
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence 56667789999999986432211 0 001 135778899999999998
Q ss_pred ceEEEEeeCCCcEEEEeCCCCce---eEEecCC-----CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc-----
Q 001367 455 QISVITCGDDKTIKVWDAVTGSR---TYSFEGH-----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----- 521 (1091)
Q Consensus 455 ~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----- 521 (1091)
.++++. |=.|-+|+++--.. +..++.+ +.-|++..|+|... ..++-.+..|+|++.|++....
T Consensus 178 --t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 178 --TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred --eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchh
Confidence 566665 77899999874322 2222222 35577888888754 5788888899999999984321
Q ss_pred -eeeecC----------CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC-CceeeEEEeccccc---------ccc
Q 001367 522 -RVDYDA----------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQ---------HNS 580 (1091)
Q Consensus 522 -~~~~~~----------~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~---------~~~ 580 (1091)
...... --..|..+.|+++|+++++-. -.+|.+||+. ..+++.+++.|..- ...
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 111111 112578899999999999853 3569999994 56677777666521 122
Q ss_pred ---eEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001367 581 ---VSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1091)
Q Consensus 581 ---v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1091)
-..++|+.++.++++|+....+++++...|
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 235789999999999999999999996654
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=1e-09 Score=125.89 Aligned_cols=210 Identities=14% Similarity=0.071 Sum_probs=138.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECC---CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC--c
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 466 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~ 466 (1091)
+..+...+.+.+|||||++||.+..+ ..|++||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566788999999999999988644 47999999987532 23445566778999999985 334444444 5
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEec-CC--eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCE
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 543 (1091)
|++||+.++.. ..+..+........|+ ++++.|+..+. ++ .|.++|+...+. ..+...........|+|+|++
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 88999887754 3444454444555664 46777766554 33 577777765543 233334455677899999999
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeEEEEe
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~ 617 (1091)
++...... +...|.+||+.++.... +... .......|+|++++|+..+.++ .+++.+.. +.....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEE-ccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 99877533 35579999998865432 2221 1234457999999998876543 35555543 44444443
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=1e-09 Score=108.77 Aligned_cols=358 Identities=14% Similarity=0.205 Sum_probs=207.2
Q ss_pred cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc-----eeEEecCCC------------cceEEEeecccCCceEE
Q 001367 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFI 502 (1091)
Q Consensus 440 h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~~~~l 502 (1091)
...-|.++.|...|. +|++|..+|.|.++.-.... ....++.|. ..|..+.|....+...+
T Consensus 24 eadiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hhcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 345689999999999 89999999999999643222 223344443 46778888888888889
Q ss_pred EEEecCCeEEEEecCCCCceee-----ecCCCCcEEEEEE---cCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecc
Q 001367 503 FSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574 (1091)
Q Consensus 503 ~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~~~~---s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 574 (1091)
+..+.|.+|++|.+........ .......+.++.. .+....+. ..+.+.+..
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aN- 161 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYAN- 161 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccc-
Confidence 9999999999998876544331 1111112222221 11111111 112233322
Q ss_pred cccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-EEEEeCCCC-----CCCCceEEEccC-CCEEEEEECCCeEE
Q 001367 575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL-LTTIDAGGG-----LPENPRICFNKN-GTLLAVIANENRIK 647 (1091)
Q Consensus 575 ~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~-----~~~v~~v~~s~~-~~~l~~~~~dg~i~ 647 (1091)
.|...|+++.++.|+..++++ .|=.|.+|+++--.. ......... ..-|++..|+|. .+.++-.+..|+|+
T Consensus 162 -aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 162 -AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred -cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 134789999999999888876 567899999864322 122211111 123677889994 46677777889999
Q ss_pred EEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeec
Q 001367 648 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 727 (1091)
Q Consensus 648 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 727 (1091)
+-|+.....-.. .-+++...
T Consensus 240 LcDmR~~aLCd~------------------------------------------------hsKlfEep------------ 259 (433)
T KOG1354|consen 240 LCDMRQSALCDA------------------------------------------------HSKLFEEP------------ 259 (433)
T ss_pred Eeechhhhhhcc------------------------------------------------hhhhhccc------------
Confidence 999874311100 00011000
Q ss_pred CCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001367 728 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 807 (1091)
Q Consensus 728 ~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 807 (1091)
. .|..+.++ .+--..|..+
T Consensus 260 -e------------dp~~rsff------------------------------------------------seiIsSISDv 278 (433)
T KOG1354|consen 260 -E------------DPSSRSFF------------------------------------------------SEIISSISDV 278 (433)
T ss_pred -c------------CCcchhhH------------------------------------------------HHHhhhhhce
Confidence 0 00000000 0122356667
Q ss_pred EecCCCCEEEEEeCCeEEEEEcc-CceeEEEecCCC------------CC---eEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 001367 808 ALSKNDAYLFSASGGVISLYIVM-TFKTILTIMPPS------------PT---ATSLAFNPHDNNVIAIGMDDSTILIYN 871 (1091)
Q Consensus 808 ~~s~dg~~la~~~dg~i~iwd~~-~~~~~~~~~~~~------------~~---i~~l~~s~~~~~~la~g~~dg~i~iwd 871 (1091)
.|+++|+++++-+--+|++||+. ..+++.+++.|. .. -..++|+- ++.++++|+....+++++
T Consensus 279 KFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 279 KFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence 77777777777766778888873 444555444332 11 25678998 788999999999999999
Q ss_pred ccCccee-eeeccccCC--eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCC
Q 001367 872 ARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 948 (1091)
Q Consensus 872 ~~~~~~~-~~l~~h~~~--V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 948 (1091)
+..|... .++...... ...+ ..-+.+.+++......+|-- .++- ...+...+|.|...
T Consensus 358 ~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd------------~ldf----~kkilh~aWhp~en 418 (433)
T KOG1354|consen 358 LARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVD------------ALDF----RKKILHTAWHPKEN 418 (433)
T ss_pred CCCCcceeecccccccCCccccc---ccceeeecCCCccccccccc------------hhhh----hhHHHhhccCCccc
Confidence 8776432 333322221 1111 01123334444333222110 0000 01467889999999
Q ss_pred EEEEEecCeEEEEE
Q 001367 949 RFLLVHETHLAIYE 962 (1091)
Q Consensus 949 ~la~~~d~~i~vwd 962 (1091)
.+|++.-+.++||.
T Consensus 419 ~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 419 SIAVAATNNLYIFQ 432 (433)
T ss_pred eeeeeecCceEEec
Confidence 99998877777763
No 270
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.28 E-value=4.2e-10 Score=129.01 Aligned_cols=214 Identities=19% Similarity=0.166 Sum_probs=139.7
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCC--CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~d--g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 402 (1091)
...+.+..+...+...+|||||++++.+...+ ..|.+||+.+++... +..+...+.++
T Consensus 180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~ 239 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAP 239 (417)
T ss_pred CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccce
Confidence 33455666776899999999999765544332 479999999886543 22345567789
Q ss_pred EECCCCCEEEEE-ECCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCC--cEEEEeCCCCc
Q 001367 403 VWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTGS 476 (1091)
Q Consensus 403 ~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~--~i~iwd~~~~~ 476 (1091)
+|+|||+.|+.. +.++ .|++||+.++... .+..+........|+|||+. |+..+ .++ .|.++|+.+++
T Consensus 240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred EECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCC
Confidence 999999988754 3333 5888898876432 24445555667899999994 44433 333 58888887766
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecCC---eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
. ..+..+...+....| ++++.+++.++.++ .|.+||+.+..... +... .......|+|||++|+.....+ +
T Consensus 314 ~-~~l~~~~~~~~~~~~--spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~-~ 387 (417)
T TIGR02800 314 V-RRLTFRGGYNASPSW--SPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG-G 387 (417)
T ss_pred E-EEeecCCCCccCeEE--CCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC-C
Confidence 4 344444455566677 45677888877765 78888887744332 2221 2234568999999998877543 3
Q ss_pred ceEEEEEecCCceeeEEE
Q 001367 554 ESFLVEWNESEGAIKRTY 571 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~ 571 (1091)
...+++.+.. +.....+
T Consensus 388 ~~~l~~~~~~-g~~~~~~ 404 (417)
T TIGR02800 388 RGVLGLVSTD-GRFRARL 404 (417)
T ss_pred cEEEEEEECC-CceeeEC
Confidence 4567776644 3333333
No 271
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.27 E-value=4.1e-10 Score=111.30 Aligned_cols=163 Identities=18% Similarity=0.326 Sum_probs=113.8
Q ss_pred EEEEEECCCCCEEEEEEC----------CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEE
Q 001367 399 VNRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~----------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1091)
=..+.|+|+|++|++-.. -+...+|.+...........+ ...++|.+++|+|+|+.+.+++|..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 346889999999887533 134666666443322221122 234579999999999975566676788999
Q ss_pred EEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC---CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEE
Q 001367 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
+||++ ++.+..+. ...++.+.|+ |+|++++.++.+ |.|.+||.++.+.+..... ..+..++|+|||++++
T Consensus 87 lyd~~-~~~i~~~~--~~~~n~i~ws--P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG--TQPRNTISWS--PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-ccEeEeec--CCCceEEEEC--CCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEE
Confidence 99986 66666664 5677888885 567889888744 6799999996666555433 3578999999999999
Q ss_pred EEecC--CCCceEEEEEecCCceeeEE
Q 001367 546 SCGTS--KEGESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 546 ~~~~~--~~~~~~i~iwd~~~~~~~~~ 570 (1091)
++... ...++.+.||+.. |+.+..
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEe
Confidence 88753 1235668899874 554443
No 272
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.26 E-value=6.8e-11 Score=117.03 Aligned_cols=358 Identities=14% Similarity=0.135 Sum_probs=227.3
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee--eecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
..++.++||...++....-+..+ -+++.+.|.++++|--+...+.. .......+++++.+.++.+.|+++-.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---- 88 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---- 88 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----
Confidence 34567789999998887766555 49999999999999654433332 22334557889999999999998875
Q ss_pred ceEEEEEec----CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEE
Q 001367 554 ESFLVEWNE----SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 554 ~~~i~iwd~----~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
.+.+.-+.+ +.....+.+..|. ..+..+-|+-...++++.+.|..+.---.+.+..+........ ...+.
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~ 162 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQ 162 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCc
Confidence 445665543 3444555666666 8899999998889999999988775544555555433322111 11222
Q ss_pred EccCCCEEEEEECCCeEEEEECC--CCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 630 FNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
+.-. +..+|...|.|....+. .-..+..+.+|.+.+.+++| .+....+.++..|.
T Consensus 163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~W---------------------d~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKW---------------------DPGQRLLFSGASDH 219 (404)
T ss_pred eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEE---------------------cCCCcEEEeccccC
Confidence 2211 56667677777766554 34678889999999999999 67778899999999
Q ss_pred ccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceee-----ccCCccc
Q 001367 708 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT-----KVPPRLY 782 (1091)
Q Consensus 708 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~~~ 782 (1091)
.+.+||+....... ....+|...|..+...+--+.+++++.||.|.+|+++.......+.... -..+..|
T Consensus 220 ~vi~wdigg~~g~~-----~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw 294 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTA-----YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW 294 (404)
T ss_pred ceEEEeccCCccee-----eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence 99999987443322 2334688899999988888999999999999999997654422222211 1233334
Q ss_pred cCCCCCceeeecCCCC---CCCCCeeEEEecCCCCEEEEEeCCeEEEEEcc-------CceeEEEecCCCCCeEEEEEcC
Q 001367 783 QPRHGPQFMVNDTTDS---NSQEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFNP 852 (1091)
Q Consensus 783 ~~~~~~~~~~~~~~~~---~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s~ 852 (1091)
+...--......+... .-...+...+-+....+...+..-.+|+-|.- +...+..+......|+++.+..
T Consensus 295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe 374 (404)
T KOG1409|consen 295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE 374 (404)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh
Confidence 3321100000000000 00112222222222222222223334444321 1122444444456789999988
Q ss_pred CCCcEEEEEeCCCeEEEEeccC
Q 001367 853 HDNNVIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 853 ~~~~~la~g~~dg~i~iwd~~~ 874 (1091)
.-.+|++++.|..|+|||+..
T Consensus 375 -tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 375 -TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred -hccceeecCCceEEEEEechh
Confidence 667899999999999999864
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.8e-09 Score=115.46 Aligned_cols=188 Identities=14% Similarity=0.229 Sum_probs=147.8
Q ss_pred CCCCEEEEEe-CCeEEEEEccCceeEEEecCC---CCCeEEEEE------cC-------------CCCcEEEEEeCCCeE
Q 001367 811 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPP---SPTATSLAF------NP-------------HDNNVIAIGMDDSTI 867 (1091)
Q Consensus 811 ~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~------s~-------------~~~~~la~g~~dg~i 867 (1091)
|.+.++|... ||.+++|+..+++....+... .+..++..| +| .|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456777765 899999999999988877642 223333333 11 155678889999999
Q ss_pred EEEeccCcceeeeec--cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcC
Q 001367 868 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 945 (1091)
Q Consensus 868 ~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~ 945 (1091)
.+|++..|+....+. .|.+.|.++.++.+-..|.|++.|+.+..|+..... .+........ .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence 999999999888776 599999999999999999999999999999999843 3444444333 688999999
Q ss_pred CCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeC-----CCEEEE-EEcCCcEEEEeCCC
Q 001367 946 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVFT-SFVDGTLSIHEASN 1008 (1091)
Q Consensus 946 dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~d-----g~~l~t-~~~dg~v~iwd~~~ 1008 (1091)
||+.|+++ .++|++||+++++.+.. +.||.++|+++.|..+ |.++++ ...+..+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988874 47899999999999887 6799999999999987 666654 44455688887765
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.6e-09 Score=115.87 Aligned_cols=194 Identities=13% Similarity=0.185 Sum_probs=154.6
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEc------C------------CCCceEEEEeeCCCc
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT 466 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~------------d~~~~~l~s~~~d~~ 466 (1091)
.|-+.|+|....||.++||++..++....+.....-++..++..|. | .+...+++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3457899999999999999999886544332222233444455552 2 122337888999999
Q ss_pred EEEEeCCCCceeEEec--CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEE
Q 001367 467 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 544 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 544 (1091)
|.++++..|+....+. .|.+.|.++.++ .+-..|.+++.|+.+..|+.........+......+.+++.+|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999888875 699999998774 345689999999999999999998888999888899999999999999
Q ss_pred EEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCC-----CCEEEE-EeCCCeEEEEECCC
Q 001367 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILA-AGDDHVIKIWDMNK 609 (1091)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~l~~-~s~dg~i~iwd~~~ 609 (1091)
++++. .|.+||+++++.+..|.+|. ++|+++.|..+ |.++++ ...+..+.+|-.+.
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98854 59999999999999999998 99999999877 677777 34556677776544
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=5.1e-08 Score=109.73 Aligned_cols=209 Identities=9% Similarity=0.070 Sum_probs=121.7
Q ss_pred CCeEEEEEccCceeEEEecCCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccC-------Ce
Q 001367 821 GGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-------RV 888 (1091)
Q Consensus 821 dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~-------~V 888 (1091)
++.+..||.++|+.+.++....... .+..+. ++ .++.+..+|.+..+|..+|+.+........ ..
T Consensus 154 ~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~ 230 (377)
T TIGR03300 154 DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERL 230 (377)
T ss_pred CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhh
Confidence 5666666666666655544322111 111222 33 567788889999999999987654321100 00
Q ss_pred EEEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCC
Q 001367 889 TGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 965 (1091)
Q Consensus 889 ~~l~~sp--dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~ 965 (1091)
..+.-+| .+..+..++.+|.+..||.++++..-... ... ..... .++..+.+ ..++.+..+|..+
T Consensus 231 ~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~~-------~~~p~--~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 231 VDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD---ASS-------YQGPA--VDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred hccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec---cCC-------ccCce--EeCCEEEEECCCCeEEEEECCC
Confidence 0111111 34577778889999999999876332111 111 11122 23444444 6789999999999
Q ss_pred cceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeE
Q 001367 966 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1045 (1091)
Q Consensus 966 ~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1045 (1091)
|+.+............+... .+..|++++.+|.|+++|..+|+.+.++.... ..+...- .+. ++.|
T Consensus 299 G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~--------~~~~~sp-~~~---~~~l 364 (377)
T TIGR03300 299 GSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG--------SGIASPP-VVV---GDGL 364 (377)
T ss_pred CcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CccccCC-EEE---CCEE
Confidence 98775532111112222222 46688899999999999999999987665211 1111100 111 3468
Q ss_pred EEEecCCcEEEEe
Q 001367 1046 AVGLTNGEVYVIE 1058 (1091)
Q Consensus 1046 ~~g~~dg~v~~w~ 1058 (1091)
++++.||.|+.|.
T Consensus 365 ~v~~~dG~l~~~~ 377 (377)
T TIGR03300 365 LVQTRDGDLYAFR 377 (377)
T ss_pred EEEeCCceEEEeC
Confidence 8999999998763
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.15 E-value=4.2e-08 Score=110.39 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=112.8
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEE
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1091)
.++.++.++.|..+|..+|+.+............... ++..++.++.+|.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5778888999999999999998876544432222222 345788888999999999998888776554332111111
Q ss_pred EcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccce-----EEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001367 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-----~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1091)
. .+..++.+.. ++.++.+|..+|+.+-.+.... ..+ .+.... +..++.+..++.+..+|..+|+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 2 2345555543 6679999999998876665432 111 111111 3467888889999999999998
Q ss_pred eEEEEeCCCCC--CCC---ceEEEcc--CCCEEEEEECCCeEEEEECCCC
Q 001367 612 LLTTIDAGGGL--PEN---PRICFNK--NGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 612 ~~~~~~~~~~~--~~v---~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
.+......... ..+ ..+.-+| .+..+++++.+|.++.||..++
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 77554321110 000 0000011 2446666667777777776655
No 277
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=99.04 E-value=0.00013 Score=83.90 Aligned_cols=622 Identities=10% Similarity=0.053 Sum_probs=300.5
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC----
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---- 407 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---- 407 (1091)
|..+-..|+.+-++| +|.+||.-|.=.+-.+.+-...... ...++. + ..-++|..++.-.+
T Consensus 304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy----------~~ilet--~-~NLgPI~Dm~Vvd~d~q~ 368 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY----------VVILET--F-VNLGPIVDMCVVDLDRQG 368 (1096)
T ss_pred CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch----------hhhhhh--c-ccccceeeEEEEeccccC
Confidence 444456667777787 4688887666555555443322110 000000 1 12357777766542
Q ss_pred CCEEEEEE---CCCEEEEEEeeCCcccceeEEEeccccCeeEEE--EcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec
Q 001367 408 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 408 g~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1091)
+..+++|+ .||++++..-.-+-.......+.| -..++.+. +.+.-.. +++.+-.+ .-++..+...-......
T Consensus 369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~~~~ 445 (1096)
T KOG1897|consen 369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEETEDP 445 (1096)
T ss_pred CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEeccc
Confidence 34566664 578898876544322222223445 33466666 4332222 23322222 23344433221111122
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
+.......+..+.- ++..|+=.. ...|++++-. .....+....+. +....+.+...++.++. .+.+...++
T Consensus 446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~-ti~~~~~n~sqVvvA~~----~~~l~y~~i 516 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKI-TIGVVSANASQVVVAGG----GLALFYLEI 516 (1096)
T ss_pred cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCCce-EEEEEeecceEEEEecC----ccEEEEEEe
Confidence 22222223322211 112222221 2345555432 233344444433 33333344445555443 334555566
Q ss_pred CCceeeEEEecccccccceEEEEEcCCC------CEEEEEeCCCeEEEE-ECCCCeeEEEEeCCCC--CCCCceEEEccC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGGG--LPENPRICFNKN 633 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~------~~l~~~s~dg~i~iw-d~~~~~~~~~~~~~~~--~~~v~~v~~s~~ 633 (1091)
..+.+....+.. -...|.|+.++|-+ ++++.|..+..+.+. -......+........ ...|.-..+-.|
T Consensus 517 ~~~~l~e~~~~~--~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 517 EDGGLREVSHKE--FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred eccceeeeeehe--ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 555532222221 24679999998752 256677765554443 3344444433322221 112344455567
Q ss_pred CCEEEEEECCCeEEEEECC--CCCeeccc--ccccccceeeeeccccccccccccCC----------------------c
Q 001367 634 GTLLAVIANENRIKILETP--ESNSVDAA--GVLSDNLRKLSVNPISTVTGAGIANG----------------------S 687 (1091)
Q Consensus 634 ~~~l~~~~~dg~i~iwd~~--~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~g----------------------~ 687 (1091)
..+|.++..||.+.-|.+. ++..-..- .-...++.--.|....+......++. .
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~ 674 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNH 674 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhh
Confidence 8899999999998766544 33221111 11122222212221111111111111 0
Q ss_pred ccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccc
Q 001367 688 VSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 767 (1091)
Q Consensus 688 ~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~ 767 (1091)
+.......-+..++++.. +.+++..++.-.....+.+. -......+++.+....+.+.+.......=
T Consensus 675 ~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvp-----l~~~prrI~~q~~sl~~~v~s~r~e~~~~------- 741 (1096)
T KOG1897|consen 675 MCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVP-----LGESPRRICYQESSLTFGVLSNRIESSAE------- 741 (1096)
T ss_pred hcccccccCCceEEEecC-CceEEEEecchhhcceeeec-----CCCChhheEecccceEEEEEecccccchh-------
Confidence 000000111222333322 44555544432233333322 12344556666644433333332111100
Q ss_pred ccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCC-CCEEEEEe-----------CCeEEEEEccCceeE
Q 001367 768 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKTI 835 (1091)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~~~-----------dg~i~iwd~~~~~~~ 835 (1091)
..+....-..++++|..+-+.+...++........+.+..|..| +.++++|. .|.|.+|....++.+
T Consensus 742 -~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L 820 (1096)
T KOG1897|consen 742 -YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL 820 (1096)
T ss_pred -hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce
Confidence 00111111235566666665555544433222334445558777 77777764 267888888774444
Q ss_pred EEecCC--CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 836 LTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 836 ~~~~~~--~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
+....+ .+.+.++..- +|++|| +-...|++|++.+.+.++.-..|..++..+...-.|..++.|.--+.+.+-.
T Consensus 821 ~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 821 ELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred eeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 443322 2344444332 567766 3456899999999877777777889999999999999999999888887776
Q ss_pred cCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCc------c----eeeeeecC-------C
Q 001367 914 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL------T----CLKQWFPI-------S 976 (1091)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~------~----~~~~~~~~-------h 976 (1091)
.+..+.. .....+...+ .+.+++.+-.+..++.+-.+|.+.+....+. + ....|..| |
T Consensus 897 y~~~eg~---f~evArD~~p--~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~h 971 (1096)
T KOG1897|consen 897 YKGDEGN---FEEVARDYNP--NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRH 971 (1096)
T ss_pred EeccCCc---eEEeehhhCc--cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeee
Confidence 6654311 2222222222 4788899988988888877777666544321 0 01111111 2
Q ss_pred ccCEEE--EEEeeCCCEEEEEEcCCcEEEEe
Q 001367 977 SVPISQ--ATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 977 ~~~v~~--v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
..-|.. -..+|-+..+..|..+|.|-+--
T Consensus 972 g~lv~~~~~s~~~~~~~vlfgTv~GsIG~i~ 1002 (1096)
T KOG1897|consen 972 GSLVMQLGDSMIPLEPKVLFGTVNGSIGIIV 1002 (1096)
T ss_pred cceEeeccccccCCCCcEEEEEccceEEEEE
Confidence 333333 12234444577788899887653
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=2e-07 Score=115.87 Aligned_cols=260 Identities=12% Similarity=0.073 Sum_probs=161.8
Q ss_pred EEEEEecC-CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCE
Q 001367 737 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 815 (1091)
Q Consensus 737 ~~~~~s~d-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 815 (1091)
..++++++ +..+++-..++.|+++|.........+.. . ......|. +. ...-.....+++.+++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~---g---~~G~~dG~------~~-~a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST---G---EEGLRDGS------FE-DATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC---C---CcCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence 45788875 55555656678899888653211000000 0 00000010 00 012234678999999887
Q ss_pred EEEEe--CCeEEEEEccCceeEEEecCC-----------------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc
Q 001367 816 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 876 (1091)
Q Consensus 816 la~~~--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~ 876 (1091)
|++++ ++.|+.+|..++.. .++.+. -.....++|+|+++.++++...++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77765 47799999877653 332110 12346799999667777777788999999998765
Q ss_pred eeeeec---------cc------cCCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCceeeee--------eeecc---C
Q 001367 877 VISKLE---------GH------SKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCR--------SLQTP---D 929 (1091)
Q Consensus 877 ~~~~l~---------~h------~~~V~~l~~spdg~~-las~s~Dg~i~vwd~~~~~~~~~~--------~~~~~---~ 929 (1091)
.. .+. ++ -.....|+++|+|++ +++-+.++.|++||+.++...... .+... .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 42 111 11 123567999999984 455566789999999876522100 00000 0
Q ss_pred CC--cCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecC------------CccCEEEEEEeeCCCEEEE
Q 001367 930 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT 994 (1091)
Q Consensus 930 ~~--~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~------------h~~~v~~v~fs~dg~~l~t 994 (1091)
+. .........++|+++|..+++ ..+++|++||..++......-.+ +-.....+++++||+.+++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000113468999999997777 57889999999877654322111 1235678999999999888
Q ss_pred EEcCCcEEEEeCCCCce
Q 001367 995 SFVDGTLSIHEASNLEV 1011 (1091)
Q Consensus 995 ~~~dg~v~iwd~~~~~~ 1011 (1091)
-+.+++|++||+.++..
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88899999999999865
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=2e-09 Score=112.75 Aligned_cols=243 Identities=14% Similarity=0.218 Sum_probs=169.2
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCc-ccc---eeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~---~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1091)
+.||+..|..++--.+.+-+++++.|.+|++|.++... ... ...+...|+.+|.++.|-.+.+ +++++ ||-|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCcc
Confidence 78999999999988888999999999999999997422 222 3446778999999999999887 56554 8899
Q ss_pred EEEeCCCCceeEEec--CCCcceEEEeecccCCceEEEEE-ecCCeEEEEecCCCCceeeec-----CCCCcEEEEEEcC
Q 001367 468 KVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYD-----APGLGCTRMAYSA 539 (1091)
Q Consensus 468 ~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~s~ 539 (1091)
.+||.--|+.+..+. ...+.+..+...++-+...++.+ +...+|+++|.+..+-...++ .++.-+.+++..+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 999988888775332 11222223332233344455554 788999999998876555443 3345688999999
Q ss_pred CCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEE-EECCCCeeEEEEeC
Q 001367 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLTTIDA 618 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~i-wd~~~~~~~~~~~~ 618 (1091)
.|++++++-. +|.|.+.|.++|+.+..+.... .....++ .|..+.++....|.++.+ |..-.|....+...
T Consensus 887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 887 KGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred CcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 9999998865 6679999999999887776544 2333333 355667777778888888 98877766555432
Q ss_pred CCCCCCCceEEEccCCCEEEEEECCCeEEEEE
Q 001367 619 GGGLPENPRICFNKNGTLLAVIANENRIKILE 650 (1091)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1091)
... ..--.-.-|.-++++.....+.+|.
T Consensus 959 ppe----pahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 959 PPE----PAHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred CCc----chhhhhccCceeEEeccCcEEEEEe
Confidence 211 0001111255566666666677764
No 280
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.00 E-value=2.8e-08 Score=96.88 Aligned_cols=250 Identities=15% Similarity=0.112 Sum_probs=158.3
Q ss_pred CcEEEEEcC---CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc---cEEEEEECCCCC
Q 001367 336 SPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGS 409 (1091)
Q Consensus 336 ~V~~v~fsp---dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~ 409 (1091)
.+..+.|.. +|...++-+..+|.|.++.......... ++ + +..-.- .-.++.|++-+.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~-----ls~~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------G-----LSSKKISVVEALSLDISTSGT 134 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------c-----cchhhhhheeeeEEEeeccCc
Confidence 666666652 4444566677778888887644322211 00 0 111111 245788999999
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC-CCceeEE-ecCCCcc
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAP 487 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~~~~~ 487 (1091)
.++++..+|.+.+-+..... +.....++.|...++.+.|+..... ++++||.|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 99999999988854444332 3333467899999999999876655 89999999999999998 4455544 5678899
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCC--EEEEEecCCCCceEEEEEecCCc
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~--~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
|.++.-++. .+.++++|+.|-.|++||.++......-....+.|..+..+|.-. .|++|--+| ..+.+.+.+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence 999887653 667999999999999999997666555455567899999998543 444444322 344444432
Q ss_pred --eeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEE-EEECCC
Q 001367 566 --AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNK 609 (1091)
Q Consensus 566 --~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~-iwd~~~ 609 (1091)
+....+..+..|..-...-.|......+++++ .|+.++ +|-.-+
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 21112222221223333334433334566654 555544 664433
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.99 E-value=2.2e-07 Score=115.49 Aligned_cols=255 Identities=11% Similarity=0.075 Sum_probs=158.6
Q ss_pred eEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecC--C------------CCCeEEEEEcCCCCcEEEEEe-CCCeE
Q 001367 805 PCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI 867 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~~~~~la~g~-~dg~i 867 (1091)
..+++++++..+.++. ++.|++||.. ++.+..+.. . -.....+++++ ++..|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 5688887655444443 5889999976 444443332 1 12357899998 555555544 45789
Q ss_pred EEEeccCcceeeeeccc-----------------cCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeee---ee
Q 001367 868 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ 926 (1091)
Q Consensus 868 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~---~~ 926 (1091)
+++|+.++.. .++.+- -..-..++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877643 333110 11346799999 56677777888999999998765321000 00
Q ss_pred ccCCCc---CCCCCceEEEEcCCCCEEEE--EecCeEEEEEcCCcceeeeee-----------cC---------CccCEE
Q 001367 927 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWF-----------PI---------SSVPIS 981 (1091)
Q Consensus 927 ~~~~~~---~~~~~i~~l~fs~dg~~la~--~~d~~i~vwd~~~~~~~~~~~-----------~~---------h~~~v~ 981 (1091)
...+.. ........++|+|+|+.|.+ ..+++|++||+.++....... .+ .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 001110 00124567999999986655 456899999998765321100 00 011346
Q ss_pred EEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccc-cCCCC--cccccceeEEEeCCCCCCeEEEEecCCcEEEEe
Q 001367 982 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1058 (1091)
Q Consensus 982 ~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~ 1058 (1091)
.++++++|..+++-+.+++|++||..++........... ...+. ...--.+..++++| +|+++++-+.++.|++|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 899999999888888899999999998876543321100 00000 00011355678888 578888888999999999
Q ss_pred cCCCC
Q 001367 1059 PNEPG 1063 (1091)
Q Consensus 1059 ~~~~~ 1063 (1091)
+....
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 97654
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=9.9e-08 Score=106.64 Aligned_cols=206 Identities=14% Similarity=0.028 Sum_probs=129.1
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcC---CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~---dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.+.+.... .+....|||||+++++..+. +..|.++|+.+|+... +....+.+....
T Consensus 181 ~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~ 239 (419)
T PRK04043 181 QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSD 239 (419)
T ss_pred eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeE
Confidence 34343333 77899999999864443333 3569999998887553 223445667788
Q ss_pred ECCCCCEEEEEEC---CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC--cEEEEeCCCCcee
Q 001367 404 WSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT 478 (1091)
Q Consensus 404 ~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~ 478 (1091)
|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++.+ ...+ .|.+.|+.+++..
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCCCeE
Confidence 9999998876532 34688888877752 2 2333443344568999999644433 2233 6888898887764
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecC---------CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
+.... ... ...| +++|+.++..+.. ..|.+.|++++.... +... .......|+|||+.++....
T Consensus 315 rlt~~-g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 315 QVVFH-GKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred eCccC-CCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEc
Confidence 33221 111 2355 5577777666543 257777877765433 2222 23335889999999988765
Q ss_pred CCCCceEEEEEecCCce
Q 001367 550 SKEGESFLVEWNESEGA 566 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~ 566 (1091)
. .+...+.+.++....
T Consensus 388 ~-~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 388 L-GNQSALGIIRLNYNK 403 (419)
T ss_pred c-CCcEEEEEEecCCCe
Confidence 4 335568888876543
No 283
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=2.4e-08 Score=110.20 Aligned_cols=507 Identities=13% Similarity=0.121 Sum_probs=254.6
Q ss_pred CcEEEEEcCCCceEEEEEcC----CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~----dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.-+-..|+|... ++|+++. .|+|.|+- .+|+.-..... .-.+++++|+|..-.|
T Consensus 17 vsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--------------------P~hatSLCWHpe~~vL 74 (1416)
T KOG3617|consen 17 VSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTY--------------------PVHATSLCWHPEEFVL 74 (1416)
T ss_pred cccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccccc--------------------ceehhhhccChHHHHH
Confidence 344567899887 6777764 48888885 66664432111 1245679999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe--cCC--Ccc
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGH--GAP 487 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~--~~~ 487 (1091)
|.|..-|.+.+|...+.+.-. ....|..+|..+.||++|. .++|+..-|.|.+|....-..++.. -.| ...
T Consensus 75 a~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ 149 (1416)
T KOG3617|consen 75 AQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQ 149 (1416)
T ss_pred hhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhce
Confidence 999999999999988754222 3447999999999999999 8999999999999986632222221 122 223
Q ss_pred eEEEeecccCCce------EEEEEecCCeEE-EEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 488 VYSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 488 v~~~~~~~~~~~~------~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
++-++|.-+.++. ..+..+.+..+- .+++.......... -.-.|+|..++.++. +|+|+-.
T Consensus 150 ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyv 217 (1416)
T KOG3617|consen 150 LTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYV 217 (1416)
T ss_pred eeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEE
Confidence 4444443333321 123333333322 33332111111110 012367777777665 5556666
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEEC-CC----------------------------Ce
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NK----------------------------VQ 611 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~-~~----------------------------~~ 611 (1091)
|- .|+......... .| .+-|.+...-+++.-.+-++.++-. .+ |-
T Consensus 218 dq-~g~~~~V~k~dS----~v-QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGv 291 (1416)
T KOG3617|consen 218 DQ-NGRQRTVHKLDS----EV-QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGV 291 (1416)
T ss_pred cC-CCcEEEEEEccc----hH-HHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccc
Confidence 63 333333322211 00 0112222122222111111111110 00 10
Q ss_pred e--EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCe----------ecccccccccceeeeeccccccc
Q 001367 612 L--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS----------VDAAGVLSDNLRKLSVNPISTVT 679 (1091)
Q Consensus 612 ~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~ 679 (1091)
+ -..+.... ...+.+++++..+..++.|...|.+.+|.-..... +...+...+.|+.+.|+|.....
T Consensus 292 Lr~~eKyg~e~-ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~ 370 (1416)
T KOG3617|consen 292 LRKSEKYGLEL-GEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTA 370 (1416)
T ss_pred ccCCcchhhhc-CCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchh
Confidence 0 00111111 12578999999999999999999999996543211 11122223345555554433322
Q ss_pred cccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEE
Q 001367 680 GAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 759 (1091)
Q Consensus 680 ~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~v 759 (1091)
++.+.... ++.+.. .+. ..|.+...++.-+.++-.|.-+.
T Consensus 371 avn~~~~v------------~ll~E~------------------~l~---~~h~~~~~A~q~ss~S~~L~hc~------- 410 (1416)
T KOG3617|consen 371 AVNTEEDV------------VLLGEN------------------SLT---VKHRGKMAAIQTSSNSFTLLHCT------- 410 (1416)
T ss_pred hhhhhhhe------------eeeccC------------------chH---HHHhhhhHHhhhcCCceEEEeec-------
Confidence 22110000 000000 000 00111111111111111111110
Q ss_pred eecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEe-
Q 001367 760 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI- 838 (1091)
Q Consensus 760 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~- 838 (1091)
+|. -. .+ ...-++..++.+ ...++...+.+|..|++++...+...
T Consensus 411 --------------------------sGv-~~--~l---~~~~~~~gi~l~--e~~lvvwNgr~v~~y~lq~SG~la~~~ 456 (1416)
T KOG3617|consen 411 --------------------------SGV-SQ--DL---KLSIPSAGICLG--EKQLVVWNGRTVVTYDLQTSGSLATIQ 456 (1416)
T ss_pred --------------------------cch-hh--hh---hhccchhhheec--cceEEEEcCceEEEEEecccchhHHHh
Confidence 110 00 00 012233444543 34566666788999998643222111
Q ss_pred -cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee--eccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 839 -MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 839 -~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~--l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
.......+++++.. .++...++.+ |.++.+. |...+. +..-.+.|.-+.++ |.+++.....+.++-+|+.
T Consensus 457 ~~tF~cet~~la~~n--qN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dvs 529 (1416)
T KOG3617|consen 457 CTTFSCETTSLAIVN--QNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDVS 529 (1416)
T ss_pred hhhhccccchHhHhh--cceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhhhh
Confidence 11122334445543 3455555544 5555544 333322 22234445545553 7888888888888888888
Q ss_pred CCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE---Eec----CeEEEEEcCCccee
Q 001367 916 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL 969 (1091)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~---~~d----~~i~vwd~~~~~~~ 969 (1091)
..+...........+..+..+.+..+..+..|..+.+ ..+ .++.+||.++++..
T Consensus 530 r~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~ 590 (1416)
T KOG3617|consen 530 RAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ 590 (1416)
T ss_pred hhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence 7665544444444455555567788888877766554 222 37999999887643
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=3.1e-09 Score=111.28 Aligned_cols=294 Identities=10% Similarity=0.119 Sum_probs=185.8
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCC-CCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
-+..+.||+..|.+++--.+.+. +++++.|++|++|.+.. |..+.+ +.|... ...|+.+|.++.|
T Consensus 727 rL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~t--------saCQfT-----Y~aHkk~i~~igf 792 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGT--------SACQFT-----YQAHKKPIHDIGF 792 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccc--------ceeeeE-----hhhccCcccceee
Confidence 34567899999999877666553 58999999999999864 333322 122222 5569999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC-CCceEEEEeeCCCcEEEEeCCCCceeEEec-
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFE- 482 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 482 (1091)
-.|-++++++ ||.|.+||.--|..+.+...-..|. .+..+.--++ .+.++++.++...+|+++|.+.++-...++
T Consensus 793 L~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~-a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 793 LADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEG-AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred eeccceeeec--cCcceeecccccchhHhhhcCcccC-CCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 9999999887 7789999998776655332222222 2333333333 333345555889999999999887766654
Q ss_pred ----CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 483 ----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 483 ----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
+..+.+.+++..+ .|..++.+-.+|.|.+.|.+++..+..+.........++ .|..+.++.... +..+.
T Consensus 870 cna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHsla 942 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSLA 942 (1034)
T ss_pred ccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----cceeE
Confidence 3445678888754 567899999999999999999887776655444333333 244455554432 44466
Q ss_pred E-EecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeeEEEEeCCCCCCCCceEEEccC
Q 001367 559 E-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN----KVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 559 i-wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~----~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
+ |....|......+... .+..- .-.-|..++++.....+.+|--. ....+..+....-....++++.-|-
T Consensus 943 VnWhaldgimh~q~kppp---epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL 1017 (1034)
T KOG4190|consen 943 VNWHALDGIMHLQDKPPP---EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL 1017 (1034)
T ss_pred eeehhcCCeeeeccCCCC---cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc
Confidence 6 8766665544443322 11111 11225567777766777777421 1122233333333334567777776
Q ss_pred CCEEEEEECCCeEEE
Q 001367 634 GTLLAVIANENRIKI 648 (1091)
Q Consensus 634 ~~~l~~~~~dg~i~i 648 (1091)
..-+..|...|.|.+
T Consensus 1018 N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1018 NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cchhhccCCCCceee
Confidence 666677777777765
No 285
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.95 E-value=0.00028 Score=81.25 Aligned_cols=581 Identities=11% Similarity=0.100 Sum_probs=286.5
Q ss_pred EECCCCCEEEEEECCCEEEEEEee-CCcccce---eEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 403 VWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~-~~~~~~~---~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
...++|...+.|..+|.+...-+. +++.... ....-+...-..++..-++| +++.|+.-|.=++-.+.+....
T Consensus 264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~ 340 (1096)
T KOG1897|consen 264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV 340 (1096)
T ss_pred cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence 345678888888888877665555 4443222 11233555566777777777 5788887665555555432221
Q ss_pred -------EEecCCCcceEEEeecccC--CceEEEEEe---cCCeEEEEecCCCCcee---eecCCCCcEEEEE-------
Q 001367 479 -------YSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGARV---DYDAPGLGCTRMA------- 536 (1091)
Q Consensus 479 -------~~~~~~~~~v~~~~~~~~~--~~~~l~s~~---~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~------- 536 (1091)
.++. .-+||..++..... .+..+++++ .||.+++..-.-+-... .+.+ -..+..+.
T Consensus 341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~ 418 (1096)
T KOG1897|consen 341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENY 418 (1096)
T ss_pred Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccC
Confidence 2332 33577777764332 223454443 57788877432111100 1111 01112222
Q ss_pred ----------------------------EcCCCCEEEEEecCCCC-----ceEEEEEecCCceeeEEEecccccccceEE
Q 001367 537 ----------------------------YSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVSV 583 (1091)
Q Consensus 537 ----------------------------~s~d~~~l~~~~~~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 583 (1091)
|+.+.+.+++....++. ...|++++-. .....+... ..++.
T Consensus 419 d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p----~~~ti 492 (1096)
T KOG1897|consen 419 DNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPP----GKITI 492 (1096)
T ss_pred CcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCC----CceEE
Confidence 22222222222221110 0112222211 111112111 23333
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC--C----CEEEEEECCCeEEEEECC-CCCe
Q 001367 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILETP-ESNS 656 (1091)
Q Consensus 584 v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iwd~~-~~~~ 656 (1091)
...+.+...++.++.++.+...++..+.+ .....+.-...|.|+.++|- + +++++|..+..+.+.-.- ....
T Consensus 493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 493 GVVSANASQVVVAGGGLALFYLEIEDGGL-REVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred EEEeecceEEEEecCccEEEEEEeeccce-eeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 33444555677777777777777766653 22222333346889999873 2 378888776665554332 2222
Q ss_pred eccc--c--cccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCC--cccceeecCCc
Q 001367 657 VDAA--G--VLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARP--SECQSLLLPSK 730 (1091)
Q Consensus 657 ~~~~--~--~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~--~~~~~~~~~~~ 730 (1091)
+... . .....|.-..+ -.|..++.++..||.+.-+.++.... ...+.. .
T Consensus 572 ~~~~~l~~~~iPRSIl~~~~---------------------e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~----~ 626 (1096)
T KOG1897|consen 572 ITHEQLSGEIIPRSILLTTF---------------------EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV----T 626 (1096)
T ss_pred eeeeccCCCccchheeeEEe---------------------eccceEEEEEcCCceEEEEEEEcccceEcccccc----c
Confidence 2111 1 11111111111 34467888888888887766543211 111110 0
Q ss_pred cccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEec
Q 001367 731 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 810 (1091)
Q Consensus 731 ~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 810 (1091)
....++.--.|+..++.-+.+.+|.-..+|..+. ..++....++...| +..+.-.
T Consensus 627 lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~----------------------kLv~spls~kev~~---~c~f~s~ 681 (1096)
T KOG1897|consen 627 LGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG----------------------KLVYSPLSLKEVNH---MCPFNSD 681 (1096)
T ss_pred cCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC----------------------cEEEeccchHHhhh---hcccccc
Confidence 1223444445555554444444443333332111 00011111111011 1111111
Q ss_pred CCCCEEEEEeCCeEEEEEccCcee--EEEecCCCCCeEEEEEcCCCCcEEEEEeC-----------C---CeEEEEeccC
Q 001367 811 KNDAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMD-----------D---STILIYNARS 874 (1091)
Q Consensus 811 ~dg~~la~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~-----------d---g~i~iwd~~~ 874 (1091)
.-...++++..+.+++.-++.-+. ++++. -....+.+++.+ ...++++.+. . ..++++|-++
T Consensus 682 a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT 759 (1096)
T KOG1897|consen 682 AYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT 759 (1096)
T ss_pred cCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCc
Confidence 123467777777777776654332 23322 233456667765 3444444332 1 1466777666
Q ss_pred cceeeeecc--c--cCCeEEEEECCC-CCEEEEEeC----------CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCce
Q 001367 875 SEVISKLEG--H--SKRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 939 (1091)
Q Consensus 875 ~~~~~~l~~--h--~~~V~~l~~spd-g~~las~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 939 (1091)
-+.+...+- . .-.|.++.|..| +.+++.|.. .|.|.|+.+...... +.+....-. +.+
T Consensus 760 f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L--~~v~e~~v~----Gav- 832 (1096)
T KOG1897|consen 760 FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL--ELVAETVVK----GAV- 832 (1096)
T ss_pred eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce--eeeeeeeec----cce-
Confidence 554432221 1 123555568877 777777652 367777777662211 111111000 012
Q ss_pred EEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeeccc
Q 001367 940 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1019 (1091)
Q Consensus 940 ~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~ 1019 (1091)
.+.---...++++-...|++|++.+.+.++. ...|..++..+...-.|..+++|..=+++.+-.....+-........
T Consensus 833 -~aL~~fngkllA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD 910 (1096)
T KOG1897|consen 833 -YALVEFNGKLLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD 910 (1096)
T ss_pred -eehhhhCCeEEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh
Confidence 2222223345556677899999998866665 45678899999999999999999887877765554443211122223
Q ss_pred ccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCCC
Q 001367 1020 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1065 (1091)
Q Consensus 1020 ~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~~ 1065 (1091)
+.|. +...+.+- |+..++.+..+|.+++-.......+
T Consensus 911 ~~p~-------Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~~t 947 (1096)
T KOG1897|consen 911 YNPN-------WMTAVEIL--DDDTYLGAENSGNLFTVRKDSDATT 947 (1096)
T ss_pred hCcc-------ceeeEEEe--cCceEEeecccccEEEEEecCCCCc
Confidence 3333 22333333 3567888888999988887654433
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.95 E-value=3.2e-09 Score=126.43 Aligned_cols=202 Identities=16% Similarity=0.257 Sum_probs=161.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+..|-..|.++.=+|...+.++|+.||.|++|....++.+....+ .|. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AGN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-cCc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 334667889999999999999999999999999999877664433 234 7899999999999 688888899999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEE---ecCCeEEEEecCCCCc-eeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI---SVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
+. .+.....+.|......+.|.. ..++++ +.++.+.+||...... -.....|.+.++++++.|..+.+++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 66 667777888998888888754 345554 3567899998654332 22447788999999999999999999
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1091)
+. +|.|++||++..++++.++. +. ...++++|+..|.++||++.....+..++..
T Consensus 2355 gr----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred CC----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 87 55699999998887766653 33 4578899999999999999998888777643
No 287
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.93 E-value=1.4e-07 Score=92.02 Aligned_cols=198 Identities=15% Similarity=0.109 Sum_probs=131.1
Q ss_pred eeEEEecCCCCEEEEEe-CCeEEEEEccCceeE--EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEecc-Ccceee
Q 001367 804 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS 879 (1091)
Q Consensus 804 v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~-~~~~~~ 879 (1091)
..++-+++.+..++++. +|.+.+-+....... +..+.|.-++..+.|+..+.+++.+|++|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45677888888887775 688886655544443 37888999999999998778899999999999999998 445554
Q ss_pred e-eccccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC--CEEEEEec
Q 001367 880 K-LEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHE 955 (1091)
Q Consensus 880 ~-l~~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg--~~la~~~d 955 (1091)
. .+-|...|.++.-|| ++.+++||+.|..|++||...-. +++. .+ ...+.|+.+..+|.- +.|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~----kPl~--~~--~v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG----KPLF--KA--KVGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc----Cccc--cC--ccccceEEEEecchhhhHHHHHHHh
Confidence 3 556889999998886 67899999999999999998522 1111 11 111579999999854 44555544
Q ss_pred CeEEEEEcCCccee----eeeecCCccCEEEEEEeeCCCEEEEEE-cCCcEE-EEeCCCC
Q 001367 956 THLAIYEAEELTCL----KQWFPISSVPISQATFSCDCRMVFTSF-VDGTLS-IHEASNL 1009 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~----~~~~~~h~~~v~~v~fs~dg~~l~t~~-~dg~v~-iwd~~~~ 1009 (1091)
+..+|-+...+..- ......|.+-...-.|.....+|+|++ .|..++ +|-..++
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 44555555433221 122233443333344433335677754 455544 6654444
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=6.9e-07 Score=99.90 Aligned_cols=218 Identities=10% Similarity=0.005 Sum_probs=132.7
Q ss_pred eEEEEEccCceeEEEecCCCCCeEEEEEcCCCCc-EEEEEeCC---CeEEEEeccCcceeeeeccccCCeEEEEECCCCC
Q 001367 823 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 898 (1091)
Q Consensus 823 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~la~g~~d---g~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 898 (1091)
.|.+-|..... .+.+.... .+....|+| ||+ .++..+.+ ..|+++|+.+++...... ..+......|||||+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 45555544333 33333233 677899999 666 46654433 479999998887544333 445566788999998
Q ss_pred EEEEE-eCC--CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecC----eEEEEEcCCcceeee
Q 001367 899 ILVSS-GGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ 971 (1091)
Q Consensus 899 ~las~-s~D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~----~i~vwd~~~~~~~~~ 971 (1091)
.|+.. +.+ ..|.++|+.++... .+....+ ......|+|||+.|+..++. .|+++|+.+++..+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 77643 333 46888888776522 2222222 12345899999999875443 699999988876544
Q ss_pred eecCCccCEEEEEEeeCCCEEEEEEcC---------CcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCC
Q 001367 972 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1042 (1091)
Q Consensus 972 ~~~~h~~~v~~v~fs~dg~~l~t~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1042 (1091)
...+. ....|||||++|+..+.. ..|.+.|+.++... .+... .. .....|+|+ |
T Consensus 317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~---~~--------~~~p~~SPD-G 379 (419)
T PRK04043 317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN---GV--------NQFPRFSSD-G 379 (419)
T ss_pred ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC---CC--------cCCeEECCC-C
Confidence 33222 124899999998877654 26788888888653 22211 01 112579994 7
Q ss_pred CeEEEEecC-CcEEEEecCCCCCCcccCC
Q 001367 1043 TQFAVGLTN-GEVYVIEPNEPGDTWAVLP 1070 (1091)
Q Consensus 1043 ~~l~~g~~d-g~v~~w~~~~~~~~~~~~~ 1070 (1091)
+.++....+ +.-.++-+.-.+.+=..+|
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence 766655544 4445665555553333333
No 289
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.91 E-value=6.4e-09 Score=123.96 Aligned_cols=225 Identities=13% Similarity=0.181 Sum_probs=166.7
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC-CCc
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGA 486 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~ 486 (1091)
++..+....++...-|..+.+.. .+..+-..|.++.=+|... +.+||+.||.|++|....+..+..++. ...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred cccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 34444444555555565554432 2344556788888888777 789999999999999999988877742 236
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc-
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 565 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~- 565 (1091)
.|+.+.|+ ..|..+..+..||.+.+|... .+.......|......+.|-. ..+++.+.+.+ ++.+.+||..-.
T Consensus 2253 ~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFN--HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhhhhc--ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence 78888774 466788899999999999877 455556777777777777765 56677666555 677999996532
Q ss_pred --eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC
Q 001367 566 --AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1091)
Q Consensus 566 --~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1091)
.++. ..| .+.++++++.|..+.+++||.+|.|++||++..++.+.++. +. ...++++|+..
T Consensus 2327 ~~s~v~--~~H---~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2327 MNSLVH--TCH---DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSE 2389 (2439)
T ss_pred ccceee--eec---CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcc
Confidence 2222 344 48999999999999999999999999999998888766643 23 46689999999
Q ss_pred CeEEEEECCCCCeeccccc
Q 001367 644 NRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 644 g~i~iwd~~~~~~~~~~~~ 662 (1091)
|.++||++..-..+..+..
T Consensus 2390 g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred cceEEEEccccchhhcCch
Confidence 9999999997766655543
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.91 E-value=6.4e-07 Score=88.23 Aligned_cols=207 Identities=19% Similarity=0.179 Sum_probs=139.5
Q ss_pred EEEecCCCCEEEEEeCCeEEEEEccCc--eeEEE---ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee
Q 001367 806 CFALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 880 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~dg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~ 880 (1091)
.++.+.||+.||+..|..|.|-..... ..+.+ .+.....=+.++||| |+.+||.+...|+|++||+....+ ..
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FV 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EE
Confidence 367889999999999999988765532 12222 223334568899999 999999999999999999985433 23
Q ss_pred ecc-------ccCCeEEEEECCCC------CEEEEEeCCCcEEEEEcCCCc---eeeeeeeeccCCCcCCCCCceEEEEc
Q 001367 881 LEG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWG---IQTCRSLQTPDGVMTLAPSETHIQFH 944 (1091)
Q Consensus 881 l~~-------h~~~V~~l~~spdg------~~las~s~Dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~fs 944 (1091)
+.. -..+|..+.|-+-. ..|+....+|.++-+-+..+. -.....+....... ..|.++.+.
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~ 156 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYH 156 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEc
Confidence 322 23567777775421 246667788888877764322 12222233222222 479999999
Q ss_pred CCCCEEEEEe-----cC-------eEEEEEcCCcceee--------------------e-----ee---cCCccCEEEEE
Q 001367 945 KDQTRFLLVH-----ET-------HLAIYEAEELTCLK--------------------Q-----WF---PISSVPISQAT 984 (1091)
Q Consensus 945 ~dg~~la~~~-----d~-------~i~vwd~~~~~~~~--------------------~-----~~---~~h~~~v~~v~ 984 (1091)
|..++|+++. ++ -+.-|.+-++..-. . ++ ......|..+.
T Consensus 157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS 236 (282)
T PF15492_consen 157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS 236 (282)
T ss_pred CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence 9999988741 11 36666654321110 0 00 11256788999
Q ss_pred EeeCCCEEEEEEcCCcEEEEeCCCCceEEEeec
Q 001367 985 FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 985 fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 1017 (1091)
.||||+.||+...+|.|.+|++++..+...+..
T Consensus 237 lSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 237 LSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 999999999999999999999999998877763
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=5e-06 Score=93.87 Aligned_cols=211 Identities=9% Similarity=0.057 Sum_probs=121.0
Q ss_pred CCeEEEEEccCceeEEEecCCCCC-----eEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccC-------Ce
Q 001367 821 GGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-------RV 888 (1091)
Q Consensus 821 dg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~-------~V 888 (1091)
++.+..+|.++|+.+..+...... ..+.+.. ++ .++.++.+|.+..+|..+|+.+........ ..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 566666777777666555422110 0111222 23 456677899999999999987654431100 01
Q ss_pred EEEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCc
Q 001367 889 TGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 966 (1091)
Q Consensus 889 ~~l~~sp--dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~ 966 (1091)
..+.-+| .+..+..++.+|.+..+|..+++..- +...+. ...+.. .+++..+...++.+..+|..+|
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W----~~~~~~------~~~~~~-~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVW----KREYGS------VNDFAV-DGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEE----eecCCC------ccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence 1111222 24566667789999999999876321 111111 111111 2344444577899999999999
Q ss_pred ceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEE
Q 001367 967 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1046 (1091)
Q Consensus 967 ~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~ 1046 (1091)
+.+............+... .+.+|+.++.||.|.+.|..+|+.+.+..... . .+.+.-+ .. +..|+
T Consensus 315 ~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~---~-----~~~s~P~-~~---~~~l~ 380 (394)
T PRK11138 315 VELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS---S-----GFLSEPV-VA---DDKLL 380 (394)
T ss_pred cEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC---C-----cceeCCE-EE---CCEEE
Confidence 8765422111111222222 24567788999999999999999886664211 1 1111001 11 35799
Q ss_pred EEecCCcEEEEec
Q 001367 1047 VGLTNGEVYVIEP 1059 (1091)
Q Consensus 1047 ~g~~dg~v~~w~~ 1059 (1091)
+++.||.|+.+++
T Consensus 381 v~t~~G~l~~~~~ 393 (394)
T PRK11138 381 IQARDGTVYAITR 393 (394)
T ss_pred EEeCCceEEEEeC
Confidence 9999999998876
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.83 E-value=2.2e-06 Score=87.65 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=127.8
Q ss_pred EEEecCCCCEEEEEe------CCeEEEEEcc-CceeEEEecCCCCCeEEEEEcCCCCcEEEEEe----------------
Q 001367 806 CFALSKNDAYLFSAS------GGVISLYIVM-TFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---------------- 862 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~------dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~---------------- 862 (1091)
.-+||+||++|.+.. .|.|-|||.. +.+.+.++..+.-.-..+.+.| |++.|+++-
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 468999999999874 3779999999 7788888988877778899999 786666652
Q ss_pred --CCCeEEEEeccCcceeee--e--ccccCCeEEEEECCCCCEEEEEeCCCc-------EEEEEcCCCceeeeeeeeccC
Q 001367 863 --DDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALNILVSSGGDAQ-------IFVWDVDGWGIQTCRSLQTPD 929 (1091)
Q Consensus 863 --~dg~i~iwd~~~~~~~~~--l--~~h~~~V~~l~~spdg~~las~s~Dg~-------i~vwd~~~~~~~~~~~~~~~~ 929 (1091)
.+-++...|..+|+.+.+ + .-|.-.|..|++.++|..++-.-..|. |-+++-... . ..+....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~--~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--L--RLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--c--eeccCCh
Confidence 123566678888988766 5 337788999999999977765544332 334443331 0 1111111
Q ss_pred CC-cCCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCc
Q 001367 930 GV-MTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 1000 (1091)
Q Consensus 930 ~~-~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~ 1000 (1091)
.. ......+-+++++++|.+++++ ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+ .|.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCC-Ccc
Confidence 00 1112468899999999999885 56789999999999887643 3355666666666 666544 344
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.81 E-value=6.3e-08 Score=99.03 Aligned_cols=165 Identities=20% Similarity=0.156 Sum_probs=115.0
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE-
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 414 (1091)
.++.+.++|.++ ++|++..+....++++...... .+.++. ..-...-+++.|..+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~------------~~v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDV------------SCVPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeE------------eecccCcceeeeeeccceEEEEe
Confidence 556667788887 7788888787777776554431 111110 0011233444555555555554
Q ss_pred --ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe-cCCCcceEEE
Q 001367 415 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1091)
Q Consensus 415 --~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~ 491 (1091)
+....+.+|+...+... .+-||-..+++++|+||++ +++++..|..|+|-....-..+..| -||..-|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44456667766654332 3559999999999999999 8999999999999877766555555 5799999999
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeec
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1091)
+.. ++..|++++.|+++++||+.+++.+..+.
T Consensus 201 sl~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLT---DNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eec---cCceeeecCCCCcEEEEecccCCcccccc
Confidence 974 33579999999999999999988875543
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.79 E-value=4.5e-06 Score=85.37 Aligned_cols=233 Identities=17% Similarity=0.166 Sum_probs=154.6
Q ss_pred EEEEEcCCCceEEEEEcCCCc-EEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE-
Q 001367 338 MSMDFHPVQHTLLLVGTNVGD-TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~-i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 415 (1091)
..++.+|+....+|.+-.-|+ ..+||..+|+...... .-....|.|| -.||+||++|.+.-
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTEn 70 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTEN 70 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEecc
Confidence 458889966667788877655 7899999998876421 1122336666 57999999999873
Q ss_pred ----CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC----------------CCcEEEEeCCCC
Q 001367 416 ----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----------------DKTIKVWDAVTG 475 (1091)
Q Consensus 416 ----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~----------------d~~i~iwd~~~~ 475 (1091)
..|.|-|||...+ ++...++..|.-.-..+.+.|||+.++++-|+- +-.+..-|..+|
T Consensus 71 d~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 71 DYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred ccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 3478999999932 455667777777778899999998544444431 335666777888
Q ss_pred ceeEE--e--cCCCcceEEEeecccCCceEEEEEecCCe-------EEEEecCCCCceeeecC-------CCCcEEEEEE
Q 001367 476 SRTYS--F--EGHGAPVYSLCPHAKENIHFIFSISVDGK-------IKAWLYDSLGARVDYDA-------PGLGCTRMAY 537 (1091)
Q Consensus 476 ~~~~~--~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~-------~~~~i~~~~~ 537 (1091)
+.+.. + .-|...|..+++. .+|..++..-..|. +-+++.. +....+.. -.+-+-++++
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~--~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVD--GDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAA 224 (305)
T ss_pred ceeeeeecCccccccceeeEEec--CCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEE
Confidence 88766 4 3377788888884 45544444433332 3333322 22222221 2346889999
Q ss_pred cCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEE
Q 001367 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1091)
Q Consensus 538 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~ 603 (1091)
++++..+++.+.- -+.+.+||..+++.+....-. .++.++-.+++ ++..+..|.+.
T Consensus 225 ~~~g~~ia~tsPr---Gg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~--f~~ssG~G~~~ 280 (305)
T PF07433_consen 225 DRDGRLIAVTSPR---GGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG--FLVSSGQGQLI 280 (305)
T ss_pred eCCCCEEEEECCC---CCEEEEEECCCCCEeeccccC-----ceeeeeecCCc--eEEeCCCccEE
Confidence 9999998877642 567999999999988776653 46777766665 44444445433
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.77 E-value=4.4e-06 Score=82.45 Aligned_cols=214 Identities=15% Similarity=0.176 Sum_probs=134.2
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeccCc--ceeee---eccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001367 848 LAFNPHDNNVIAIGMDDSTILIYNARSS--EVISK---LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 922 (1091)
Q Consensus 848 l~~s~~~~~~la~g~~dg~i~iwd~~~~--~~~~~---l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~ 922 (1091)
++.+. +|++||+. .|..|.|-..++. ..+.. .+...-.-+.++||||+.+||.+...|+|+++|+.+.++-.-
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 56677 89888855 5778888766542 22222 222333567899999999999999999999999997543221
Q ss_pred eeeeccCCCcCCCCCceEEEEcCCC-------CEEEEEecCeEEEEEcCCc-----ce--eeeeecCCccCEEEEEEeeC
Q 001367 923 RSLQTPDGVMTLAPSETHIQFHKDQ-------TRFLLVHETHLAIYEAEEL-----TC--LKQWFPISSVPISQATFSCD 988 (1091)
Q Consensus 923 ~~~~~~~~~~~~~~~i~~l~fs~dg-------~~la~~~d~~i~vwd~~~~-----~~--~~~~~~~h~~~v~~v~fs~d 988 (1091)
..-....+ .....|..+.|-+-. .+|+...+|.++=|-+..+ +. ..++...+...|.++.+.|.
T Consensus 81 ~p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred CcccccCC--ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 11111111 122457777775532 4566688888887765432 11 12223334779999999999
Q ss_pred CCEEEEEEcC-----------CcEEEEeCCCCceEEEeeccc---------------------ccCCCCcccccceeEEE
Q 001367 989 CRMVFTSFVD-----------GTLSIHEASNLEVQCRILSTA---------------------YLRPTTSCLHVYPHAIA 1036 (1091)
Q Consensus 989 g~~l~t~~~d-----------g~v~iwd~~~~~~~~~~~~~~---------------------~~~~~~~~~~v~~~~~~ 1036 (1091)
-++|++||.. .-+..|.+-++.......... +.......+.|. .++
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmS 236 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMS 236 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEE
Confidence 8888777632 136778877765544322110 000000123344 456
Q ss_pred eCCCCCCeEEEEecCCcEEEEecCC--CCCCccc
Q 001367 1037 AHPLKPTQFAVGLTNGEVYVIEPNE--PGDTWAV 1068 (1091)
Q Consensus 1037 ~~p~d~~~l~~g~~dg~v~~w~~~~--~~~~~~~ 1068 (1091)
.+| ||..||+...+|.|.+|+++. ...+|..
T Consensus 237 lSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 237 LSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ECC-CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 788 599999999999999999987 3455643
No 296
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=5e-06 Score=92.53 Aligned_cols=343 Identities=14% Similarity=0.107 Sum_probs=188.5
Q ss_pred cEEEEEECCCCCEEEEEEC----CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC
Q 001367 398 SVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~----d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 473 (1091)
.-+-..|+|...++|+++. .|.|.||- ++|+.-+.. +.+- .+++++|+|..- +|+.|-.-|.+.+|...
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecC
Confidence 3344679999999998863 46788874 445432211 2222 366799999765 78888888999999977
Q ss_pred CCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC--CC--C--cEEEEEEcCCCCEEE--
Q 001367 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PG--L--GCTRMAYSANGRRLF-- 545 (1091)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~--~--~i~~~~~s~d~~~l~-- 545 (1091)
+.+.......|..+|..+.|+ ++|..++++..-|.+.+|..+..+....... |. . ...+...++++.-++
T Consensus 90 ~~e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~l 167 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKL 167 (1416)
T ss_pred CceeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhh
Confidence 777666667899999999994 5778999999999999998875443332211 11 1 234555566643221
Q ss_pred -EEecCCCCceEEE-EEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001367 546 -SCGTSKEGESFLV-EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1091)
Q Consensus 546 -~~~~~~~~~~~i~-iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1091)
-+...+|.. -+- .++.+.....+... =.-.|+|..++.++.+|+|+-.|- +|+..........
T Consensus 168 aKaaVtgDe~-alD~~fnwk~~~a~rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~-- 232 (1416)
T KOG3617|consen 168 AKAAVTGDES-ALDEPFNWKESLAERSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE-- 232 (1416)
T ss_pred hhhhccCchh-hhcccccCccchhhcccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--
Confidence 111111111 111 22211111001110 012478888999999999988774 4555555444322
Q ss_pred CCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
..+-|.+...-+++...+-++.++-.... +....+..+.++.. .|...|+ ++.+
T Consensus 233 --vQmLf~~~~eai~~i~e~lr~~l~~v~~~-------G~~ee~~~vk~sgk-----~GgrqGg------------iA~s 286 (1416)
T KOG3617|consen 233 --VQMLFMGYCEAISIIIEFLRDCLIFVLAK-------GTSEERCAVKVSGK-----LGGRQGG------------IACS 286 (1416)
T ss_pred --HHHHHhcccceEEEEeeeceeeEEEecCC-------CchHHhhhhhhccc-----cCCccCc------------cccc
Confidence 34556664445555555444444433211 11111111111100 0111111 2222
Q ss_pred ccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCcccc
Q 001367 704 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 783 (1091)
Q Consensus 704 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 783 (1091)
...|.++- ..... ......+.+++++..+..+.++...|.+.+|.-..... .....+..|.
T Consensus 287 EssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f------~g~p~~d~w~ 347 (1416)
T KOG3617|consen 287 ESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGF------QGDPTIDVWT 347 (1416)
T ss_pred cccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeeecCccc------cCCCCcceEE
Confidence 22121110 00000 11456789999999999999999999999996332211 1111345565
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEE
Q 001367 784 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 819 (1091)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~ 819 (1091)
+.+.. ...+.|+.+.|.|--..+++-
T Consensus 348 l~~~~----------e~~g~I~~i~Wg~~k~~~avn 373 (1416)
T KOG3617|consen 348 LNGKR----------ESLGKISLIRWGPIKSTAAVN 373 (1416)
T ss_pred ecCch----------hhccceEEEEeccccchhhhh
Confidence 54433 245677888887755444443
No 297
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.74 E-value=1.1e-07 Score=103.68 Aligned_cols=247 Identities=15% Similarity=0.254 Sum_probs=164.4
Q ss_pred CcEEEEEcCCC--ceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC-CCEEE
Q 001367 336 SPMSMDFHPVQ--HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLG 412 (1091)
Q Consensus 336 ~V~~v~fspdg--~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~la 412 (1091)
.|-.+.|||.- .+. ++......-.+|++....-... ..++.||+.+|+.+.|.|. -..||
T Consensus 69 ~vad~qws~h~a~~~w-iVsts~qkaiiwnlA~ss~~aI----------------ef~lhghsraitd~n~~~q~pdVla 131 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYW-IVSTSNQKAIIWNLAKSSSNAI----------------EFVLHGHSRAITDINFNPQHPDVLA 131 (1081)
T ss_pred hhcceecccCCCCcee-EEecCcchhhhhhhhcCCccce----------------EEEEecCccceeccccCCCCCccee
Confidence 56667777643 334 3334445667898865432221 1237899999999999995 57899
Q ss_pred EEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecCCCcceEEE
Q 001367 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~ 491 (1091)
+++.|..+..||+.+... .......-......++|+-... .+...+..+.|.+||.+.| .++..+++|...|+.+
T Consensus 132 tcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~ 207 (1081)
T KOG0309|consen 132 TCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSI 207 (1081)
T ss_pred eccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehH
Confidence 999999999999988653 2223344445677899987655 3555666778999999865 5678899999999999
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeec-CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE---------e
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW---------N 561 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw---------d 561 (1091)
.|..... ..+.+.+.||+|+.||.+......... ....++..-++.|-|+-...--.. |...+.++ +
T Consensus 208 ~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~--G~n~v~~~~c~n~d~e~n 284 (1081)
T KOG0309|consen 208 DFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV--GGNMVPQLRCENSDLEWN 284 (1081)
T ss_pred HHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc--CCeeeeeccccchhhhhc
Confidence 8753322 368899999999999998765544332 234466666677755433221111 12234333 3
Q ss_pred cCC-ceeeEEEecccccccceEEEEEcCC----------CCEEEEEeCCCeEEEEECCC
Q 001367 562 ESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 562 ~~~-~~~~~~~~~~~~~~~~v~~v~~~~~----------~~~l~~~s~dg~i~iwd~~~ 609 (1091)
..+ .+.+..|.||. ..|....|-.. .-.|++-+.|.++++|-+.+
T Consensus 285 ~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 285 VFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 332 35788898887 55554444322 23689999999999998764
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.74 E-value=1.1e-07 Score=97.32 Aligned_cols=159 Identities=9% Similarity=0.092 Sum_probs=113.4
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeccCcce----eeeeccccCCeEEEEECCCCCEEE---EEeCCCcEEEEEcCCCc
Q 001367 846 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILV---SSGGDAQIFVWDVDGWG 918 (1091)
Q Consensus 846 ~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~la---s~s~Dg~i~vwd~~~~~ 918 (1091)
..+..++ ++++||++..+....++++..... +..... ...-+++.|-.+..... .+++...+.+|+...+.
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3455666 888999988888877777654332 222221 12233444443333333 34455566677666422
Q ss_pred eeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEc
Q 001367 919 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 997 (1091)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~ 997 (1091)
....-||.. .++.+++|||+++|+++ .|..|+|-....--.+..+..||..-|..++.-++. .|+++|.
T Consensus 144 ------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sG 213 (390)
T KOG3914|consen 144 ------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSG 213 (390)
T ss_pred ------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCC
Confidence 334456666 79999999999999996 788999999888778888889999999999987654 5899999
Q ss_pred CCcEEEEeCCCCceEEEee
Q 001367 998 DGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 998 dg~v~iwd~~~~~~~~~~~ 1016 (1091)
|++|++||+.+|+.+..+.
T Consensus 214 D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCcEEEEecccCCcccccc
Confidence 9999999999999876554
No 299
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=1.1e-08 Score=113.54 Aligned_cols=215 Identities=15% Similarity=0.227 Sum_probs=157.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCC-cEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK-TIKV 469 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~-~i~i 469 (1091)
+..|+...+|++||-+.+.|++|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. .++.+ ... -..+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~--~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST--QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce--eeeeccccCchHHH
Confidence 77899999999999999999999999999999999997665 46789999999999999994 44333 232 5779
Q ss_pred EeCCC-CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC----CCcEEEEEEcCCCCEE
Q 001367 470 WDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRL 544 (1091)
Q Consensus 470 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~s~d~~~l 544 (1091)
|++.+ +...++|.+ -.++.|+.+ ...-+.|+......+||+++.....++... ...-.+..|+|+...+
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccccc----cceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99764 455555543 234555432 233455555567889999998876653221 1133678899999887
Q ss_pred EEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001367 545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624 (1091)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 624 (1091)
+-- =.+||.+..+.++.|.... .. ..-.|+|.|..++.-++ |||+++.++++..+.-..
T Consensus 1246 lnd---------GvLWDvR~~~aIh~FD~ft---~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq--- 1304 (1516)
T KOG1832|consen 1246 LND---------GVLWDVRIPEAIHRFDQFT---DY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ--- 1304 (1516)
T ss_pred eeC---------ceeeeeccHHHHhhhhhhe---ec-ccccccCCCceEEeech-----hhhhHHHHHHhcCccccc---
Confidence 643 2589999888887776544 11 22358999999998775 999999999887765433
Q ss_pred CceEEEccCCCEEEE
Q 001367 625 NPRICFNKNGTLLAV 639 (1091)
Q Consensus 625 v~~v~~s~~~~~l~~ 639 (1091)
..+.|+..|..++.
T Consensus 1305 -c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1305 -CAVTFNSTGDVMYA 1318 (1516)
T ss_pred -eEEEeccCccchhh
Confidence 67888888876654
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.70 E-value=3.6e-07 Score=89.62 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=56.9
Q ss_pred CCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCce---eEEEecCCC-----CCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001367 799 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY 870 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~~~~~la~g~~dg~i~iw 870 (1091)
.|...+.++.|..|...+.++.+=.|-+|+++--. .+..+++|. .-|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 58888999999999999999999999999986322 122333333 2467778888666677777788888888
Q ss_pred eccC
Q 001367 871 NARS 874 (1091)
Q Consensus 871 d~~~ 874 (1091)
|++.
T Consensus 250 DlRq 253 (460)
T COG5170 250 DLRQ 253 (460)
T ss_pred hhhh
Confidence 8763
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.69 E-value=2.5e-06 Score=82.31 Aligned_cols=148 Identities=11% Similarity=-0.035 Sum_probs=107.3
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
+.++++|+|++++++.+....|-.|.+...............++.=.+..|+.... .++++..||++.|||++.-...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 78999999999999999999999999986554332223334445556788998877 7999999999999999865433
Q ss_pred E-----EecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC--------CcEEEEEEcCCCCEEE
Q 001367 479 Y-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--------LGCTRMAYSANGRRLF 545 (1091)
Q Consensus 479 ~-----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~~~~s~d~~~l~ 545 (1091)
. +-..|.+.+..+.|++.+--.+|+..-.-+.+++.|+++......+.... ..+....|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 22358899999999876655677777778899999999877655433222 2255556666655554
Q ss_pred EEe
Q 001367 546 SCG 548 (1091)
Q Consensus 546 ~~~ 548 (1091)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 443
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.68 E-value=3.2e-06 Score=81.58 Aligned_cols=189 Identities=10% Similarity=-0.030 Sum_probs=128.1
Q ss_pred EEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc-ce-ee-eeccccCCeEEEEE
Q 001367 817 FSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EV-IS-KLEGHSKRVTGLVF 893 (1091)
Q Consensus 817 a~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~-~~-~~-~l~~h~~~V~~l~~ 893 (1091)
.+..|.++++.+++-+..........-.+.++++++ |++++++.++...|..|.+... +. +. ....-++.-.+..|
T Consensus 133 i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 133 IASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF 211 (344)
T ss_pred eccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence 333477778877765443333222223478999999 9999999999999999998763 22 22 33334556678899
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCE--EEE-EecCeEEEEEcCCcceee
Q 001367 894 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLL-VHETHLAIYEAEELTCLK 970 (1091)
Q Consensus 894 spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~--la~-~~d~~i~vwd~~~~~~~~ 970 (1091)
+.....+|+++.||++.|||+........ ........+.+.+..+.|++-|.+ |.. -.-+.+.+.|++++....
T Consensus 212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~---~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGTCAIYDVRNMATPMA---EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred ccCcceEEEEecCCcEEEEEecccccchh---hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 99999999999999999999987442221 111112223358999999987643 333 345689999999987665
Q ss_pred eeecC------C-ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCc
Q 001367 971 QWFPI------S-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 971 ~~~~~------h-~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
.+... | ...|..-.|+.++..+.+.+++ .+.-|++.+..
T Consensus 289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 289 VIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred EEecCccccccccccccccccccCCCcccccccch-hhheeeccccc
Confidence 54332 2 2347788888888877776655 46667766543
No 303
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.66 E-value=1.9e-05 Score=89.23 Aligned_cols=193 Identities=18% Similarity=0.110 Sum_probs=114.2
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCc--ceE-----EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 529 (1091)
.++.++.++.+.-+|.++|+.+.+...... ... .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 467777788999999999998877643220 000 0000011123467788899999999999998888766543
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccc--cceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~s~dg~i~iwd~ 607 (1091)
....+.... ++ .++.+.. ++.++-+|..+|+.+-.+....... ....+-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-DG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-CC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 221111221 33 4444432 5679999999999877765422000 00001111 1346777888999999999
Q ss_pred CCCeeEEEEeCCCCC--CC---CceEEEcc--CCCEEEEEECCCeEEEEECCCCCee
Q 001367 608 NKVQLLTTIDAGGGL--PE---NPRICFNK--NGTLLAVIANENRIKILETPESNSV 657 (1091)
Q Consensus 608 ~~~~~~~~~~~~~~~--~~---v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1091)
.+|+.+......... .. ...+..+| .+..+++++.+|.+..+|..+++.+
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~ 279 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence 999877654322110 00 01111122 2456777778888998888877544
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.66 E-value=3.2e-05 Score=81.01 Aligned_cols=220 Identities=14% Similarity=0.148 Sum_probs=138.5
Q ss_pred EEEEec-CCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEec-CCCCE
Q 001367 738 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAY 815 (1091)
Q Consensus 738 ~~~~s~-dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~ 815 (1091)
+++|.+ ++..+++-...+.|..|+..... .....+ .....+++. +++.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~-----------------------~~~~~~------~~~~G~~~~~~~g~l 54 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE-----------------------VEVIDL------PGPNGMAFDRPDGRL 54 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE-----------------------EEEEES------SSEEEEEEECTTSEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe-----------------------EEEEec------CCCceEEEEccCCEE
Confidence 567887 55544444457778777754321 111111 126677777 66555
Q ss_pred EEEEeCCeEEEEEccCceeEEEecC-----CCCCeEEEEEcCCCCcEEEEEeCC--------CeEEEEeccCcceeeeec
Q 001367 816 LFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLE 882 (1091)
Q Consensus 816 la~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~la~g~~d--------g~i~iwd~~~~~~~~~l~ 882 (1091)
+.+..+.+.++|..+++....... .......+++.| +|++.++.... |.|..++.. ++.....
T Consensus 55 -~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~- 130 (246)
T PF08450_consen 55 -YVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA- 130 (246)
T ss_dssp -EEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-
T ss_pred -EEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEe-
Confidence 445555566669998865443332 334678999999 78877765543 567777776 5543333
Q ss_pred cccCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCc--eeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeE
Q 001367 883 GHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 958 (1091)
Q Consensus 883 ~h~~~V~~l~~spdg~~la-s~s~Dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i 958 (1091)
..-.....|+|+||++.|. +-+..+.|..+++.... ....+.+....... ...-.+++..+|++.++. ..+.|
T Consensus 131 ~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 131 DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEE
Confidence 3345678999999998765 56677889999986432 22223332222221 135689999999988874 67899
Q ss_pred EEEEcCCcceeeeeecCCccCEEEEEEe-eCCCEEEEE
Q 001367 959 AIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTS 995 (1091)
Q Consensus 959 ~vwd~~~~~~~~~~~~~h~~~v~~v~fs-~dg~~l~t~ 995 (1091)
.++|.. |+.+..+..+ ...+++++|. +|.+.|+..
T Consensus 208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEE
T ss_pred EEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEE
Confidence 999987 8888776655 4589999995 566655544
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.65 E-value=6.1e-06 Score=86.32 Aligned_cols=224 Identities=13% Similarity=0.112 Sum_probs=137.6
Q ss_pred CCeEEEEEccCceeEEEecCC--CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCC
Q 001367 821 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 898 (1091)
Q Consensus 821 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 898 (1091)
+|.|..||..+|+.+...... .....+.++. ++..+++++.++.++.||..+|+.+.+... .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999998877532 1222222332 344666678999999999999998877664 22222111 22345
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcceeeeeecCCc
Q 001367 899 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS 977 (1091)
Q Consensus 899 ~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~ 977 (1091)
.++.++.++.|..+|..+++..-........... .........++..++++ .++.|..+|.++|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 6666778889999999998754321111111110 11222333337767665 589999999999999877544221
Q ss_pred c---------CEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEE
Q 001367 978 V---------PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1048 (1091)
Q Consensus 978 ~---------~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g 1048 (1091)
. .+..-....++ .++.++.+|.+.-+|+.+++.+ +... ... +... ..+ ++..|+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~--w~~~---~~~-----~~~~---~~~-~~~~l~~~ 218 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKL--WSKP---ISG-----IYSL---PSV-DGGTLYVT 218 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEE--EEEC---SS------ECEC---EEC-CCTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEE--EEec---CCC-----ccCC---cee-eCCEEEEE
Confidence 1 11222223345 7777777886444499999855 2211 111 1111 223 36778888
Q ss_pred ecCCcEEEEecCCCCCCcc
Q 001367 1049 LTNGEVYVIEPNEPGDTWA 1067 (1091)
Q Consensus 1049 ~~dg~v~~w~~~~~~~~~~ 1067 (1091)
+.++.|..||+..++..|.
T Consensus 219 ~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCCCCEEeE
Confidence 8999999999999988885
No 306
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.63 E-value=3.5e-05 Score=79.89 Aligned_cols=285 Identities=12% Similarity=0.130 Sum_probs=158.1
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeEEEEeCCCC---
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG--- 621 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~--- 621 (1091)
+.++++|..+++.+..+... -...+..+|+++.+++++ ..-.|.+||..+-.....+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 45999999999988777653 344567899999998754 234699999999988887665532
Q ss_pred --CCCCceEEEccCCCEEEEEEC--CCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCC
Q 001367 622 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDV 697 (1091)
Q Consensus 622 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~ 697 (1091)
.......+++.|++++++..- ...|.|.|+...+.+..+....- .-.-|.+ .
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~~iyP~~--------------------~ 147 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----WLIYPSG--------------------N 147 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----EEEEEEE--------------------T
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----EEEEecC--------------------C
Confidence 123456788999998877643 46788889888877665543221 1111111 0
Q ss_pred CcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeecc
Q 001367 698 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKV 777 (1091)
Q Consensus 698 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 777 (1091)
..+.+-+.||++....++............-......-+..-+++..+..++..+-+|.++--++........
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~------- 220 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG------- 220 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE-------
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc-------
Confidence 1122333334433333321111110000111111222233444555555566677778887777655432111
Q ss_pred CCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe---------C--CeEEEEEccCceeEEEecCCCCCeE
Q 001367 778 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---------G--GVISLYIVMTFKTILTIMPPSPTAT 846 (1091)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~---------d--g~i~iwd~~~~~~~~~~~~~~~~i~ 846 (1091)
.-|.+.+.... .... ..+.-.-+++++..+.|.+.- + ..|.++|+.+++.+.++.. ...+.
T Consensus 221 --~~~~~~t~~e~-~~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~ 292 (342)
T PF06433_consen 221 --KPWSLLTDAEK-ADGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPID 292 (342)
T ss_dssp --EEEESS-HHHH-HTTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEES
T ss_pred --CcccccCcccc-ccCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccc
Confidence 11221110000 0000 112334567776655555431 1 1489999999999998873 34677
Q ss_pred EEEEcCCCCcEEEEE-eCCCeEEEEeccCcceeeeecc
Q 001367 847 SLAFNPHDNNVIAIG-MDDSTILIYNARSSEVISKLEG 883 (1091)
Q Consensus 847 ~l~~s~~~~~~la~g-~~dg~i~iwd~~~~~~~~~l~~ 883 (1091)
+|+.+.++..+|.+. ..++.+.+||..+|+.+..+.+
T Consensus 293 Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 293 SIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 999999666677654 4579999999999999888874
No 307
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.59 E-value=5e-05 Score=78.72 Aligned_cols=205 Identities=15% Similarity=0.175 Sum_probs=130.3
Q ss_pred EEEecCCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEecc-Ccceeee-
Q 001367 806 CFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVISK- 880 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~-~~~~~~~- 880 (1091)
.+++|.||+++.+.. ...|.|.|+..++.+.++..+. +..+--+ +++-+.+-+.||++.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEec--CCCceEEEecCCceEEEEECCCCCEeEee
Confidence 457788888888776 4679999999999988876443 1112112 33457778889999998887 4554322
Q ss_pred ---eccccCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCc---C-CCCCceEEEEcCCCCEEEE
Q 001367 881 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---T-LAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 881 ---l~~h~~~V-~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~---~-~~~~i~~l~fs~dg~~la~ 952 (1091)
+..-.+++ ..-+++.++..++-.+..|.|+--|+.................. . -++.-.-+++++....|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 11122222 23344455556666789999999999887655444443321100 0 0134567899887766655
Q ss_pred -E---ecC-------eEEEEEcCCcceeeeeecCCccCEEEEEEeeCCC-EEEEE-EcCCcEEEEeCCCCceEEEee
Q 001367 953 -V---HET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 953 -~---~d~-------~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~-~l~t~-~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
. .++ .|.+||+.+++.+..+... .++.+|..|.|.+ +|++. ..++.+.+||..+|+.+.++.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 2 222 4889999999999887653 4577999999887 55444 457899999999999998776
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.58 E-value=9.9e-07 Score=84.72 Aligned_cols=210 Identities=13% Similarity=0.202 Sum_probs=126.4
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
.|+.+.|+.+. .|+++..++.+......++.+... |+-.....++ ..+..|+++-.+-+.+--+..+++++
T Consensus 38 ~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~~~--~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 38 KLSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGIDPF--KVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred EEEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcCce--eeeeccCCCCCcccccccCCceEecC
Confidence 37777787765 468888888888777666554431 1111111111 11334554444444555678899999
Q ss_pred CCCEEEEEEeeCCcccceeEEEe-ccccCeeEEEEcCCCCceEEEEee-----CCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 416 SKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
.||.+.+.+.+.-..+. ..+. .|.+. -+.+....++ .+.+++ .-+..+.|++...+.+..-......|.
T Consensus 109 ~dg~~~v~s~~~~~~~~--~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~ 183 (319)
T KOG4714|consen 109 ADGSLAVFSTDKDLALM--SRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVT 183 (319)
T ss_pred CCceEEEEechHHHhhh--hhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccch
Confidence 99999999987622111 1111 12221 1222233344 233322 123455666554332221111223488
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCcee-eecCCCCcEEEEEEcC-CCCEEEEEecCCCCceEEEEEecCC
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
+++-+|... ..+++|+.||.+-+||++...... .+..|..++..+-|+| ++..|++++. +|.+..||..+
T Consensus 184 ~l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 184 ALCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 888877644 688999999999999999875444 5677888999999999 5678888876 55699999654
No 309
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.58 E-value=0.00031 Score=68.05 Aligned_cols=137 Identities=12% Similarity=-0.043 Sum_probs=88.0
Q ss_pred eEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccccccc
Q 001367 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 579 (1091)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1091)
.+++.|+..+.+.--|..+++........ ..+.+-+.- -|++++.+.. .+.+++.+.++|.....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence 46677777777777777766655543222 223222221 4667877776 4459999999998887777644 1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 580 ~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
--......+++..+++|+.|++.+..|..+...+...+..+.. ..+-+..|-...|..+...|.+.
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceEE
Confidence 1123345788999999999999999999999998887766552 23344555223344444445443
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.5e-06 Score=87.36 Aligned_cols=291 Identities=13% Similarity=0.136 Sum_probs=188.4
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
-|.+.|+.+.-+... ++.+++.||.++.|.-..-.-+.- ...+..|...|.+++.|-||.++
T Consensus 7 mhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvEf----------------VKhFraHL~~I~sl~~S~dg~L~ 68 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVEF----------------VKHFRAHLGVILSLAVSYDGWLF 68 (558)
T ss_pred cccceeeeEeeehhh--eEEeeecchhhhhcCCCCccceee----------------hhhhHHHHHHHHhhhccccceeE
Confidence 477788888777654 679999999999998543111110 01156688999999999999999
Q ss_pred EEEEC-CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCC-CceEEEEeeCCCcEEEEeCCCCc--eeEEecCCCcc
Q 001367 412 GVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC-KQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAP 487 (1091)
Q Consensus 412 as~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~-~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~ 487 (1091)
.+.+. |..++++|+++-....-+ .+..-.+.+.. ..++.. ..++.++.-.++.+.|+|-..+. ....-.-|..+
T Consensus 69 ~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP 146 (558)
T KOG0882|consen 69 RSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP 146 (558)
T ss_pred eeccCcccceeEEEeeccchhhhc-ccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc
Confidence 99877 999999999875433211 12222222222 222321 11133444567899999965443 23444569999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCC------CCceee---------ecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDS------LGARVD---------YDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~~---------~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
|..+.+.+.. ..+++....|.|..|..+. ...... +........++.|+|+|..+...+.
T Consensus 147 V~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~--- 221 (558)
T KOG0882|consen 147 VKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP--- 221 (558)
T ss_pred eEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc---
Confidence 9999986654 5789999999999998763 111111 1222335679999999999988764
Q ss_pred CceEEEEEecCCceeeEEEecccc------------------------------cccceEEEEEcCCCCEEEEEeCCCeE
Q 001367 553 GESFLVEWNESEGAIKRTYQGLQL------------------------------QHNSVSVVHFDTAKDQILAAGDDHVI 602 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~------------------------------~~~~v~~v~~~~~~~~l~~~s~dg~i 602 (1091)
+..|++++..+|+.++.+..... ....-..+.|...+++|+.++--| |
T Consensus 222 -DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-i 299 (558)
T KOG0882|consen 222 -DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-I 299 (558)
T ss_pred -ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-E
Confidence 77799999999877654421110 011233466788889998887655 7
Q ss_pred EEEECCCCeeEEEEeCCCCC-----------------------CCCceEEEccCCCEEEEEECCCeEEEE
Q 001367 603 KIWDMNKVQLLTTIDAGGGL-----------------------PENPRICFNKNGTLLAVIANENRIKIL 649 (1091)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~-----------------------~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1091)
++.++.++...+.+...... ..-..+.+.+|...++++-..+.++++
T Consensus 300 kvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 300 KVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 88999888877766432210 001123355566666666666777777
No 311
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.57 E-value=4.6e-07 Score=99.12 Aligned_cols=267 Identities=14% Similarity=0.158 Sum_probs=167.9
Q ss_pred ccccCCCCCCccccCccccccccCCCc-ccccCcccCC-cCCCCCCcchhhhcccccCCcccCCCchheeeecccCCCCc
Q 001367 260 VTMDRPEDSDILSEKSPVRILNEQAST-VTYPGVSLKN-IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSP 337 (1091)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V 337 (1091)
+.++.|-.++.+..|. .++.+.. .|.|.....- +..++|...++-.+.... ...+-..|.||+..|
T Consensus 50 ~dld~p~~ppr~l~h~----tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss--------~~aIef~lhghsrai 117 (1081)
T KOG0309|consen 50 IDLDDPFTPPRWLHHI----TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS--------SNAIEFVLHGHSRAI 117 (1081)
T ss_pred EeccCCCCCceeeecc----CcchhcceecccCCCCceeEEecCcchhhhhhhhcCC--------ccceEEEEecCccce
Confidence 4555666666666653 4443322 2222222111 445566666655443211 135567889999999
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CCCEEEEEEC
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYS 416 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~ 416 (1091)
+.+.|.|...-++|+++.|-.|..||+.+..... ..|+ .-...-+.++|+- ++..|| .+.
T Consensus 118 td~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~----ys~~--------------~w~s~asqVkwnyk~p~vla-ssh 178 (1081)
T KOG0309|consen 118 TDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF----YSTS--------------SWRSAASQVKWNYKDPNVLA-SSH 178 (1081)
T ss_pred eccccCCCCCcceeeccccccceeeeccCCCcce----eeee--------------cccccCceeeecccCcchhh-hcc
Confidence 9999999998899999999999999998765332 1111 1224556789987 445554 456
Q ss_pred CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee-EEecCCCcceEEEeecc
Q 001367 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~ 495 (1091)
.+.|.+||...|.... ..+++|...|+.++|..--.. .+.+++.|++|+.||.+....- ........+|.--++.|
T Consensus 179 g~~i~vwd~r~gs~pl--~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~P 255 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPL--CSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLP 255 (1081)
T ss_pred CCceEEEeccCCCcce--EEecccceeeehHHHhhhhhh-hhcccCCCCceeeecccccccccceeccccCcceeccccc
Confidence 6679999999887443 367789999999999764332 5889999999999997754322 11222445666666666
Q ss_pred cCCceEEEEEecCCeEEEEecCC----------CCceeeecCCCCcEEEEEEcCCC----------CEEEEEecCCCCce
Q 001367 496 KENIHFIFSISVDGKIKAWLYDS----------LGARVDYDAPGLGCTRMAYSANG----------RRLFSCGTSKEGES 555 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~i~~~~~s~d~----------~~l~~~~~~~~~~~ 555 (1091)
-.+|.++.-.-.+..+.+++.++ ...+..+.+|...|....|-..+ -.|++-+. +.
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk----D~ 331 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK----DQ 331 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec----CC
Confidence 66665554433334555544332 33456777777766555443221 25666654 56
Q ss_pred EEEEEecCC
Q 001367 556 FLVEWNESE 564 (1091)
Q Consensus 556 ~i~iwd~~~ 564 (1091)
.+++|-+.+
T Consensus 332 ~lrlWpI~~ 340 (1081)
T KOG0309|consen 332 TLRLWPIDS 340 (1081)
T ss_pred ceEeeeccH
Confidence 699997754
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.57 E-value=0.00011 Score=77.11 Aligned_cols=221 Identities=16% Similarity=0.120 Sum_probs=142.6
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC-CCCCEEEEEEC
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-PDGSLLGVAYS 416 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~ 416 (1091)
.+++|.+....|+++....+.|..|+..+++.... . . .....+++. +++. |+.+..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~-~-~~~~G~~~~~~~g~-l~v~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------D-L-PGPNGMAFDRPDGR-LYVADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------E-S-SSEEEEEEECTTSE-EEEEET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------e-c-CCCceEEEEccCCE-EEEEEc
Confidence 36789983334888888889999999988865421 1 1 126677777 6654 455555
Q ss_pred CCEEEEEEeeCCcccceeEEEe--c-cccCeeEEEEcCCCCceEEEEeeCC--------CcEEEEeCCCCceeEEecCCC
Q 001367 417 KHIVQLYAYHGGSDARQQLEID--A-HVGNVNDLAFSAPCKQISVITCGDD--------KTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~~~~s~d~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
.+ +.++|..+++. ..+.... . .....+.+++.++|+ +.++.... |.|..++.. ++..... ..-
T Consensus 60 ~~-~~~~d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGL 133 (246)
T ss_dssp TC-EEEEETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEE
T ss_pred Cc-eEEEecCCCcE-EEEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEe-cCc
Confidence 55 56669888753 3333332 2 345789999999999 55655433 557777766 5543333 234
Q ss_pred cceEEEeecccCCceEE-EEEecCCeEEEEecCCCCc----ee---eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 486 APVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGA----RV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~----~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
...+.++|++ +++.| ++-+..+.|..++++.... .. .+....+....+++..+|+..++... .+.|
T Consensus 134 ~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I 207 (246)
T PF08450_consen 134 GFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRI 207 (246)
T ss_dssp SSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEE
T ss_pred ccccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEE
Confidence 5567888855 55554 5777888999999875443 11 12222234788999999988777653 5569
Q ss_pred EEEecCCceeeEEEecccccccceEEEEE-cCCCCEEEEEe
Q 001367 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAG 597 (1091)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~-~~~~~~l~~~s 597 (1091)
.++|.. |+.+..+.... ..+++++| .++.+.|+..+
T Consensus 208 ~~~~p~-G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELPV---PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETT-SCEEEEEE-SS---SSEEEEEEESTTSSEEEEEE
T ss_pred EEECCC-ccEEEEEcCCC---CCEEEEEEECCCCCEEEEEe
Confidence 999987 88888877664 57899999 47767776644
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.8e-06 Score=89.35 Aligned_cols=298 Identities=13% Similarity=0.124 Sum_probs=190.4
Q ss_pred ccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC
Q 001367 732 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 811 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 811 (1091)
|...|+.+..+ ..+++++++-||.++.|.-... +|..+.. ....|...+.+++.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i--------------------sGvEfVK---hFraHL~~I~sl~~S~ 63 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI--------------------SGVEFVK---HFRAHLGVILSLAVSY 63 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCc--------------------cceeehh---hhHHHHHHHHhhhccc
Confidence 55666665544 4567999999999999863210 1111111 1123777888999999
Q ss_pred CCCEEEEEe--CCeEEEEEccCceeEEEecCCCC-CeEEEEEcCCCC-cEEE-EEeCCCeEEEEeccCcc-ee-eeeccc
Q 001367 812 NDAYLFSAS--GGVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDN-NVIA-IGMDDSTILIYNARSSE-VI-SKLEGH 884 (1091)
Q Consensus 812 dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~-~~la-~g~~dg~i~iwd~~~~~-~~-~~l~~h 884 (1091)
||.++.+.+ |..++++|+.+...+..++...- .-.++..++.+. ..|| +.-.+|.+.++|-.... .. ..-.-|
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH 143 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH 143 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence 999999966 68899999987766544332211 112233343111 1333 33467899999976543 22 333459
Q ss_pred cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee--e------eeccCCCcCCCCCceEEEEcCCCCEEEE-Eec
Q 001367 885 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR--S------LQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE 955 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~--~------~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d 955 (1091)
..+|..+.+++-+..++|....|.|.-|..+. ..+..+ . -..+-+....-....++.|+|+|..+++ +.|
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D 222 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD 222 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence 99999999999999999999999999999884 111000 0 0000111111135789999999999998 788
Q ss_pred CeEEEEEcCCcceeeeeecC-------------------------------C-ccCEEEEEEeeCCCEEEEEEcCCcEEE
Q 001367 956 THLAIYEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLSI 1003 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~~~~~~~-------------------------------h-~~~v~~v~fs~dg~~l~t~~~dg~v~i 1003 (1091)
..|++++..+|+.++.+-.. | ...-+.+.|...|++|+.++-=| |++
T Consensus 223 rkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikv 301 (558)
T KOG0882|consen 223 RKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV 301 (558)
T ss_pred cEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE
Confidence 89999999998776542110 1 23346678899999999887765 899
Q ss_pred EeCCCCceEEEeecccc---------cCCCC-c------ccccceeEEEeCCCCCCeEEEEecCCcEEEE
Q 001367 1004 HEASNLEVQCRILSTAY---------LRPTT-S------CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1057 (1091)
Q Consensus 1004 wd~~~~~~~~~~~~~~~---------~~~~~-~------~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w 1057 (1091)
.++.++...+.+..... ..... + .....++ +-+.+ |+.+++++-.-+.++++
T Consensus 302 in~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 302 INLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC-CCeEEEeeeecceEEEE
Confidence 99999988765542210 00000 0 0011111 22555 57888899999999988
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.55 E-value=1.2e-05 Score=90.07 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=76.3
Q ss_pred EecCCCCEEEEEeCCeEEEEEccC-----ceeEEEecCCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEEeccCcce----
Q 001367 808 ALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEV---- 877 (1091)
Q Consensus 808 ~~s~dg~~la~~~dg~i~iwd~~~-----~~~~~~~~~~~~~i~~l~~s~~~~~~la~-g~~dg~i~iwd~~~~~~---- 877 (1091)
++.++|++... .+++|.+.|..+ .+.+..+. -......++++| ||+++++ +..+.+|.|+|+.+.+.
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 34567887665 467899999988 34455444 455678899999 6666655 45688999999987542
Q ss_pred --------eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001367 878 --------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 878 --------~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~ 916 (1091)
+.+.+--.+ -...+|.++|+...|..-|..|..||+..
T Consensus 360 ~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333333233 34578999999888999999999999986
No 315
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.55 E-value=1.7e-06 Score=85.06 Aligned_cols=251 Identities=17% Similarity=0.219 Sum_probs=161.8
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCc--ccceeEEEeccc------------cCeeEEEEcCCCCceEEEE
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHV------------GNVNDLAFSAPCKQISVIT 460 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~~~~s~d~~~~~l~s 460 (1091)
....|+++.|...|.|||+|...|.|.+|.-.... ..+-..++++|. ..|..+.|..++..-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34689999999999999999988999999765432 122223455554 3588898887765556777
Q ss_pred eeCCCcEEEEeCCCCc-------------------ee--------EE---------------e-cCCCcceEEEeecccC
Q 001367 461 CGDDKTIKVWDAVTGS-------------------RT--------YS---------------F-EGHGAPVYSLCPHAKE 497 (1091)
Q Consensus 461 ~~~d~~i~iwd~~~~~-------------------~~--------~~---------------~-~~~~~~v~~~~~~~~~ 497 (1091)
.+.|.+|++|.+.... .+ -. . ..|...|+++.+ +.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~--Ns 182 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF--NS 182 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee--cC
Confidence 7889999999874321 00 00 1 235666777777 44
Q ss_pred CceEEEEEecCCeEEEEecCCCCcee---eecCCCC-----cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee-
Q 001367 498 NIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK- 568 (1091)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~-----~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~- 568 (1091)
|.+.+++ +.|-.|.+|+++.....+ .++.+.. -|++..|+|....++.-+. ..|.|.+-|++...+-
T Consensus 183 D~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 183 DKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred chheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 5445554 557789999987654433 3333332 4778889996544433322 1566999998743211
Q ss_pred ---EE----Eec-----ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCC----------CCCC
Q 001367 569 ---RT----YQG-----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGG----------LPEN 625 (1091)
Q Consensus 569 ---~~----~~~-----~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~----------~~~v 625 (1091)
.. +.+ ...-...|..+.|+++|+++++-+. -+|.|||.+. ..++.+++.+.. ...|
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence 00 111 1111256888999999998887654 5899999875 456666654421 0111
Q ss_pred ---ceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 626 ---PRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 626 ---~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
..+.|+.|.+.+.+|+..+...+|-..
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccc
Confidence 357889899999999988888777643
No 316
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.53 E-value=3.5e-05 Score=80.53 Aligned_cols=222 Identities=13% Similarity=0.081 Sum_probs=138.1
Q ss_pred CCEEEEEEeeCCcccceeEEEec-cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecc
Q 001367 417 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1091)
+|+|..||..+|+.+-.. .+.. ... ..+. ..+++. .+++++.++.|..||..+|+.+.++.. ..++...-
T Consensus 2 ~g~l~~~d~~tG~~~W~~-~~~~~~~~-~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~--- 72 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY-DLGPGIGG-PVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP--- 72 (238)
T ss_dssp TSEEEEEETTTTEEEEEE-ECSSSCSS-EEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE---
T ss_pred CCEEEEEECCCCCEEEEE-ECCCCCCC-ccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee---
Confidence 678899999888765533 1211 111 1111 233455 577778899999999999999988765 22221111
Q ss_pred cCCceEEEEEecCCeEEEEecCCCCceeee-cCCC---CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEE
Q 001367 496 KENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~---~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1091)
..++..++.++.++.+..+|..+++..... .... ..........++..++++.. .+.|..+|+.+|+.+...
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEE
T ss_pred eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEe
Confidence 112246677778889999999999888873 3221 11122223334777777764 556999999999998887
Q ss_pred ecccccc-c------ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC
Q 001367 572 QGLQLQH-N------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 572 ~~~~~~~-~------~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1091)
....... . .+..-....++ .++.++.++.+.-+|..+++.+.... .. .+.. ....++..+++++.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTT
T ss_pred ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCC
Confidence 7633111 1 11222222334 77778878854444999999765333 11 1222 2456778888888999
Q ss_pred eEEEEECCCCCee
Q 001367 645 RIKILETPESNSV 657 (1091)
Q Consensus 645 ~i~iwd~~~~~~~ 657 (1091)
.+..||..+++..
T Consensus 223 ~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 223 RLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEECCCCCEE
Confidence 9999999998664
No 317
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=5.7e-07 Score=91.13 Aligned_cols=173 Identities=17% Similarity=0.251 Sum_probs=121.1
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCC--------hhHHHHHHHhcCcCHHHHHHHhccC-CCcCCccccchhhhh
Q 001367 5 NKDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFE 75 (1091)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~--------~~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~ 75 (1091)
+.-+-|+|..||..+||..+|..|-++|.+. .++..++++|++|+...|+...+.= ..+. +..-.+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 3457899999999999999999999999875 2378889999999999999887642 1121 112237799
Q ss_pred hhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCCChHHHHHHHHHHHHhhhcC
Q 001367 76 IRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEAN 155 (1091)
Q Consensus 76 i~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~ 155 (1091)
+..|.|+||+..+++.+|+.+.++++.|....+...++....++.++...+-..+ .+-....| ++.|+.++-.+
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sky---~~l~~~~r---w~~l~~lF~s~ 266 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSKY---LNLLTADR---WSVLADLFLSE 266 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCcccc---cCcccHHH---HHHHHHHhhHH
Confidence 9999999999999999999999999999987788888888888888655332211 11112223 23444333332
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHh-cCCC
Q 001367 156 PILQGKLKFPSIKRQRLRRLINQSLNWQHV-HCAN 189 (1091)
Q Consensus 156 ~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~-~~~~ 189 (1091)
.. ..+.+|.-| +|.++|+--+..|.. .|.+
T Consensus 267 a~--~l~~i~~~~--~L~~~l~~GLsalKTp~c~~ 297 (389)
T KOG0396|consen 267 AL--KLFGIPINP--ALTIYLQAGLSALKTPRCLN 297 (389)
T ss_pred HH--HHhCCCCCc--HHHHHHHhhhhhcccccccc
Confidence 22 112223223 488888877777753 3443
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.52 E-value=4.3e-05 Score=85.75 Aligned_cols=184 Identities=11% Similarity=0.071 Sum_probs=119.6
Q ss_pred EEecCCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC---C-eEEEEeccCcceeee
Q 001367 807 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSSEVISK 880 (1091)
Q Consensus 807 l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d---g-~i~iwd~~~~~~~~~ 880 (1091)
+-++|||+.+...+ .+.+.+.|.++.+...++.... ....++++| +++++++.+.+ | ++..-+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 44678998776555 4779999999988877766433 456789999 78888777632 1 233322222111111
Q ss_pred eccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC----CceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--e
Q 001367 881 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 954 (1091)
Q Consensus 881 l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~ 954 (1091)
+.- ..+ -++.++|++... .++.|.+.|..+ +. .....+.... ....+++||||++++++ .
T Consensus 276 fni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 276 FNI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred Ech--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCC
Confidence 110 000 133457887665 367799999887 21 1122233322 35689999999999984 5
Q ss_pred cCeEEEEEcCCcce------------eeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC
Q 001367 955 ETHLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 955 d~~i~vwd~~~~~~------------~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
+.++.|+|+++.+. ..+... ...-...+|.++|....|-.-|..|..|++..
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 78999999988653 222222 33445679999999888889999999999987
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.52 E-value=3.7e-05 Score=90.19 Aligned_cols=276 Identities=10% Similarity=0.172 Sum_probs=156.2
Q ss_pred cccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCC
Q 001367 733 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 812 (1091)
Q Consensus 733 ~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 812 (1091)
...|.++.|..++..++.+...|.+.+-|....... ..+ .-...|.+++||||
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--------------------------ivg-~vd~GI~aaswS~D 120 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE--------------------------IVG-NVDNGISAASWSPD 120 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee--------------------------eee-eccCceEEEeecCC
Confidence 468999999999999999999999988653322110 000 24678999999999
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEecCC-----CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc-eeeeeccccC
Q 001367 813 DAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEGHSK 886 (1091)
Q Consensus 813 g~~la~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~-~~~~l~~h~~ 886 (1091)
++.++....+..-++...+..++....-+ .+....+-|-. .... .-| ..|.....+....+ ......-| +
T Consensus 121 ee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTq-frg-s~gr~~~~~~~~~ek~~~~~~~~-~ 196 (1265)
T KOG1920|consen 121 EELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQ-FRG-SEGRQAARQKIEKEKALEQIEQD-D 196 (1265)
T ss_pred CcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-ccee-eec-chhhhcccccccccccccchhhc-c
Confidence 99999988655445554555444332211 01111222211 0000 001 11111111111000 00111112 2
Q ss_pred CeEEEEECCCCCEEEEEe----CC-CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE----EecCe
Q 001367 887 RVTGLVFSDALNILVSSG----GD-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETH 957 (1091)
Q Consensus 887 ~V~~l~~spdg~~las~s----~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~----~~d~~ 957 (1091)
.=+.+.|--||.++|+.. .+ +.|+|||-+. .... .-.... ..-.+++|-|.|.++|+ .+++.
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns--~se~~~------~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNS--TSEPVE------GLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhc--ccCccc------ccccceeecCCCCeEeeeeecCCCCc
Confidence 235699999999999732 23 7899999883 2211 011111 13458999999999998 25667
Q ss_pred EEEEEcCCcceeeeee---cCCccCEEEEEEeeCCCEEEE---EEcCCcEEEEeCCCCceEEEeecccccCCCCcccccc
Q 001367 958 LAIYEAEELTCLKQWF---PISSVPISQATFSCDCRMVFT---SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1031 (1091)
Q Consensus 958 i~vwd~~~~~~~~~~~---~~h~~~v~~v~fs~dg~~l~t---~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1031 (1091)
|.++.-. |-.-..+. +.....|..++|+.++..|++ ......|++|-+.+-..-.... -..+.. .
T Consensus 268 IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~--l~~~~~-----~- 338 (1265)
T KOG1920|consen 268 IVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE--LQFSQK-----A- 338 (1265)
T ss_pred EEEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE--Eecccc-----c-
Confidence 9999854 32222221 112445999999999999987 4444559999998876533222 011111 0
Q ss_pred eeEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 1032 PHAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1032 ~~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
-+.|+|.....|.+-..+|...+.++
T Consensus 339 --~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 339 --LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred --cccccCCCceeEEEEecCCcEEEEEE
Confidence 14566655555555556666655554
No 320
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.50 E-value=5.6e-05 Score=83.64 Aligned_cols=267 Identities=13% Similarity=0.186 Sum_probs=146.7
Q ss_pred cCCCceEEEEE--------cCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 343 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 343 spdg~~llasg--------~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
|||++++|+.- +..+.+.|+|+.+++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78998766522 123678899998876553 11225678899999999999998
Q ss_pred ECCCEEEEEEeeCCcccceeEEEec-------c---------ccCeeEEEEcCCCCceEEEEeeCCCcE-----------
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKTI----------- 467 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~~~~s~d~~~~~l~s~~~d~~i----------- 467 (1091)
. ++.|.+++..++...+. +..| - -+.-..+.|||||+++.++... +..|
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d-~~~v~~~~~~~~~~~ 136 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD-EREVPEYPLPDYSPP 136 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE--TTS-EEEEEEESSS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC-CcCCceEEeeccCCc
Confidence 6 56799999877743322 1122 0 1233678899999953333222 2222
Q ss_pred ------------------------EEEeCCCCceeEE-e----cCCCcceEEEeecccCCceEEEEE--ecCC---eEEE
Q 001367 468 ------------------------KVWDAVTGSRTYS-F----EGHGAPVYSLCPHAKENIHFIFSI--SVDG---KIKA 513 (1091)
Q Consensus 468 ------------------------~iwd~~~~~~~~~-~----~~~~~~v~~~~~~~~~~~~~l~s~--~~dg---~i~i 513 (1091)
.|+|+.+++.... . ..-..-+..+.|.+ ++..++.. ..+. .+.+
T Consensus 137 ~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 137 DSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp TESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEE
T ss_pred cccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEE
Confidence 2334433332110 0 11222344445533 33423222 2221 2556
Q ss_pred EecCCCCceeeecCC-CCc---EEEEEEc-CCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceE-EEEEc
Q 001367 514 WLYDSLGARVDYDAP-GLG---CTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVS-VVHFD 587 (1091)
Q Consensus 514 wd~~~~~~~~~~~~~-~~~---i~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~v~~~ 587 (1091)
+|..++......... ... .....+. +++..++..+. ++|-..|++++..++.......+ . -.|. .+.++
T Consensus 215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G-~---~~V~~i~~~d 289 (353)
T PF00930_consen 215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSG-D---WEVTSILGWD 289 (353)
T ss_dssp EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-S-S---S-EEEEEEEE
T ss_pred EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccC-c---eeecccceEc
Confidence 676665554433221 111 2245554 77777776665 67788999999988875433333 2 4563 47788
Q ss_pred CCCCEEEE-EeC----CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 588 TAKDQILA-AGD----DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 588 ~~~~~l~~-~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
++++.++. +.. ...++.-++..+..+..+...... ...+.|||++++++....
T Consensus 290 ~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 290 EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 88877765 443 335666677723344555444331 148999999998886554
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.46 E-value=4.1e-07 Score=63.26 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=37.0
Q ss_pred cceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 875 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 875 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
|+++.++.+|.+.|++|+|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 322
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.46 E-value=4.9e-07 Score=85.40 Aligned_cols=133 Identities=22% Similarity=0.288 Sum_probs=96.0
Q ss_pred HHHHHHHhcCcCHHHHHHHhccC-CCcCCccccchhhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001367 38 MKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA 116 (1091)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1091)
...++++|++|+++.|+..++.. +.+... ...+.|.|++|+|+|++..++..+|+.+.|+++.|......+.++.+.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~--~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR--NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc--CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 57899999999999999999875 222111 123889999999999999999999999999999766543556677777
Q ss_pred hhcccccccc--hhccccccCCChHHHHHHHHHHHHhhhcCccccccccCCCcc-hHHHHHHHHHHHHHH
Q 001367 117 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ 183 (1091)
Q Consensus 117 ~ll~~~~~~~--~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~Ll~qa~~~q 183 (1091)
.+|...+..+ ...+....+ .+.|..+.+.+.+.+-...- +| .+.|..++.+....+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~~--~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELLS--PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHhC--hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 7777766544 223222212 36788888888876655322 33 567888888776554
No 323
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.45 E-value=2.5e-06 Score=82.08 Aligned_cols=195 Identities=15% Similarity=0.201 Sum_probs=117.1
Q ss_pred CCcEEEEEeCCCeEEEEeccCcce-eeeecc-ccCCeEEEEECCCCCEEEEEe-----CCCcEEEEEcCCCceeeeeeee
Q 001367 854 DNNVIAIGMDDSTILIYNARSSEV-ISKLEG-HSKRVTGLVFSDALNILVSSG-----GDAQIFVWDVDGWGIQTCRSLQ 926 (1091)
Q Consensus 854 ~~~~la~g~~dg~i~iwd~~~~~~-~~~l~~-h~~~V~~l~~spdg~~las~s-----~Dg~i~vwd~~~~~~~~~~~~~ 926 (1091)
-+..++++..||.+.+++.+.-.. ..+... |.+. .+.+....++.+.+++ .-+..+.|+++..+
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~-------- 170 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK-------- 170 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccc--------
Confidence 456789999999999998775211 111111 2221 1122223344444322 12335666665522
Q ss_pred ccCCCcCCCCCceEEEEcCCCCEEEE-E-ecCeEEEEEcCCcceeeeeecCCccCEEEEEEee-CCCEEEEEEcCCcEEE
Q 001367 927 TPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSI 1003 (1091)
Q Consensus 927 ~~~~~~~~~~~i~~l~fs~dg~~la~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~-dg~~l~t~~~dg~v~i 1003 (1091)
.+.........|++++-.|..+.+++ | .||.+.+||++......+++..|..+++.+.|.| ++..|+++++||.+--
T Consensus 171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 11111111124888999998777766 4 6789999999999888888899999999999999 5688999999999999
Q ss_pred EeCCCCceEEEee---cccccCCCCcccccc-----e---eEE-EeCCCCCCeEEEEecCCcEEEEe
Q 001367 1004 HEASNLEVQCRIL---STAYLRPTTSCLHVY-----P---HAI-AAHPLKPTQFAVGLTNGEVYVIE 1058 (1091)
Q Consensus 1004 wd~~~~~~~~~~~---~~~~~~~~~~~~~v~-----~---~~~-~~~p~d~~~l~~g~~dg~v~~w~ 1058 (1091)
||..+.-+.+... ...|+....-.+.|. + +++ +|+- -|..|++|++-+.|++.+
T Consensus 251 wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 251 WDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeec-cCceEEeccccceEEEec
Confidence 9987532211111 112333221111110 0 011 1222 267899999999988865
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.45 E-value=6.3e-05 Score=88.31 Aligned_cols=281 Identities=11% Similarity=0.169 Sum_probs=160.6
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
..+.|.++.|..++..+ ..+..+|.|.+-|.++....- ...-...|.+++||||++.++
T Consensus 67 gd~~i~s~~fl~d~~~i-~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~ 125 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSI-CVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLA 125 (1265)
T ss_pred CCcceEEEEEecccceE-EEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEE
Confidence 34699999999998854 667788999999988876543 223457999999999999999
Q ss_pred EEECCCEEEEEEeeCCcccceeEEEec---cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce-eEEecCCCcce
Q 001367 413 VAYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPV 488 (1091)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v 488 (1091)
..+..+++.+-+-. -..+... .+.. ..+....+-|-....+ +.|+ .|.....+....+. +.... -...-
T Consensus 126 liT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~-~~~~~ 198 (1265)
T KOG1920|consen 126 LITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIE-QDDHK 198 (1265)
T ss_pred EEeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchh-hccCC
Confidence 99988877664321 1111100 0100 0111222333222221 1111 11111111110000 00001 11122
Q ss_pred EEEeecccCCceEEEEE-----ecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 489 YSLCPHAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
++++| .+||+++++. ...+.|++||-+ +.....-....+--.+++|-|.|..+++.....+ +..|.++..+
T Consensus 199 ~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN 274 (1265)
T KOG1920|consen 199 TSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN 274 (1265)
T ss_pred ceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC
Confidence 34566 6788888873 333789999876 3332233333334567999999999998876544 5568888744
Q ss_pred C---ceeeEEEecccccccceEEEEEcCCCCEEEE---EeCCCeEEEEECCCCeeEE--EEeCCCCCCCCceEEEccCC-
Q 001367 564 E---GAIKRTYQGLQLQHNSVSVVHFDTAKDQILA---AGDDHVIKIWDMNKVQLLT--TIDAGGGLPENPRICFNKNG- 634 (1091)
Q Consensus 564 ~---~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~---~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~~- 634 (1091)
. |+....+.... ..+..++|+.++..|++ ......|++|-..+..... .+..... .-+.|+|..
T Consensus 275 GL~hg~f~l~~p~de---~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~ 347 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDE---KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTE 347 (1265)
T ss_pred CccccccccCCcccc---cchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCc
Confidence 2 22222222222 44899999999998887 4455669999988765433 3332222 237888833
Q ss_pred CEEEEEECCCeEEEEECC
Q 001367 635 TLLAVIANENRIKILETP 652 (1091)
Q Consensus 635 ~~l~~~~~dg~i~iwd~~ 652 (1091)
..+.+-..+|...+++..
T Consensus 348 ~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 348 KTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred eeEEEEecCCcEEEEEEE
Confidence 344444466776666543
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3e-05 Score=79.59 Aligned_cols=251 Identities=13% Similarity=0.152 Sum_probs=146.5
Q ss_pred eecCCCccEEEEEECCCCC-EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1091)
++.+|...|..++|||... +|..++.+..|+|.|+++...+. ....| ..+++++|.-|... +++.|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999777 78889999999999999975544 34455 78999999998875 8899999999999
Q ss_pred EeCCCCce-eEEecC--CCcceEEEeeccc----CCceEEEEEecCCeEEEEecCCCC--ceeeec-CCCCcEEEEEEcC
Q 001367 470 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLG--ARVDYD-APGLGCTRMAYSA 539 (1091)
Q Consensus 470 wd~~~~~~-~~~~~~--~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~-~~~~~i~~~~~s~ 539 (1091)
||++..+- +..+.+ ...+|..++..+. +.+.+++....+ +..|.+.-.. ...... ...+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 223322 2344544443211 112234433332 3345443222 222222 2244566777777
Q ss_pred CCCEEEEEecCCCCceEEE----EEecCCceeeEEEe----ccccc-ccceEEEEEcCCCCEEEE-EeCCCeEEEEECCC
Q 001367 540 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQ----GLQLQ-HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 609 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~----~~~~~-~~~v~~v~~~~~~~~l~~-~s~dg~i~iwd~~~ 609 (1091)
-.+.++....+......++ --|...|..+-.-+ +.... ...-..+.-.++.++++. +...+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666666554321111111 11222232221111 10000 001111222345566655 55778899999999
Q ss_pred CeeEEEEeCCCCCCCCceEEEcc-C-CCEEEEEECCCeEEEEECC
Q 001367 610 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP 652 (1091)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iwd~~ 652 (1091)
++.++++.... .|..++... + +.+|++-++ ..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLTD-DRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhheec-ceEEEEecC
Confidence 99999998763 355555443 2 345665554 578887654
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.42 E-value=4.9e-06 Score=93.84 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=130.7
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEE
Q 001367 812 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 890 (1091)
Q Consensus 812 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 890 (1091)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++..|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 334455554 677888999998888877655555665555 6789999999999999999999999999999999976
Q ss_pred EEECCCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCC--CCEEEEEecCeEE
Q 001367 891 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD--QTRFLLVHETHLA 959 (1091)
Q Consensus 891 l~~spdg~~las~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~d--g~~la~~~d~~i~ 959 (1091)
+.. .|+.|+++|. |..|+|||+..-+... +++.+.+ ..-+.|.|. .+..+++..|+..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 655 5889999885 5568999998733211 2222222 245677774 3444457889999
Q ss_pred EEEcCC---cceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 960 IYEAEE---LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 960 vwd~~~---~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
+-|..+ ...-......-...+..+.+|++|..++.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 988332 2111111222255599999999999999999999999997
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.39 E-value=0.0002 Score=79.23 Aligned_cols=304 Identities=12% Similarity=0.096 Sum_probs=157.3
Q ss_pred cCCCCEEEEEecC-----CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 001367 538 SANGRRLFSCGTS-----KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1091)
Q Consensus 538 s~d~~~l~~~~~~-----~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1091)
|||+++++..... .+..+.+.++|+.+++....... . ..+....|+|+|+.++... ++.|++++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 5788887764321 11245689999999876655444 2 5778889999999988876 57899999888754
Q ss_pred EEEEeCCCC---------------CCCCceEEEccCCCEEEEEECC-CeEEEEECC---CCCeecccccccccceeeeec
Q 001367 613 LTTIDAGGG---------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSVN 673 (1091)
Q Consensus 613 ~~~~~~~~~---------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~ 673 (1091)
.+....... ...-..+.||||+++|+....| ..+..+.+. .... .-..+..+.+.
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~YP 149 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRYP 149 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCcccccccC
Confidence 433221100 1223678899999999877543 334333322 1110 00011112221
Q ss_pred cccccccccccCCcccCCCCCCCCCcccccccccc--cccccccccCCcccceeecC--CccccccEEEEEEecCCCeEE
Q 001367 674 PISTVTGAGIANGSVSNEDPKEDVKPEISVEAENK--SEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQAIF 749 (1091)
Q Consensus 674 ~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~--i~~w~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~ 749 (1091)
. .|...-. +.++++..+... .+..+ .......+..+.|+++++.++
T Consensus 150 k---------------------------~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 150 K---------------------------AGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp B---------------------------TTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred C---------------------------CCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcEEE
Confidence 0 1111112 233444322211 11111 022466788999999998444
Q ss_pred EeecC---ceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEec-CCCCEEEEEe--CC-
Q 001367 750 ALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--GG- 822 (1091)
Q Consensus 750 ~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~la~~~--dg- 822 (1091)
....+ ..+.+.. .|+.++.+.........+--.......+. +++..++..+ +|
T Consensus 200 ~~~~nR~q~~~~l~~--------------------~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVL--------------------CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp EEEEETTSTEEEEEE--------------------EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred EEEcccCCCEEEEEE--------------------EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 44332 2233222 23333332222211111122233355554 7777666555 44
Q ss_pred -eEEEEEccCceeEEEecCCCCCeEE-EEEcCCCCcEEEEEeCCC----eEEEEeccCcceeeeeccccCCeEEEEECCC
Q 001367 823 -VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDA 896 (1091)
Q Consensus 823 -~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~~~~~la~g~~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd 896 (1091)
.|.+++..++.. +.+....-.|+. +.++++++.+..++..++ .|+.-++.++..+..+....+.-..+.|||+
T Consensus 260 ~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spd 338 (353)
T PF00930_consen 260 RHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPD 338 (353)
T ss_dssp EEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TT
T ss_pred cEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCC
Confidence 477777766663 355545556744 678885555656666533 6666677723334555443333368999999
Q ss_pred CCEEEEE
Q 001367 897 LNILVSS 903 (1091)
Q Consensus 897 g~~las~ 903 (1091)
|++++-.
T Consensus 339 g~y~v~~ 345 (353)
T PF00930_consen 339 GKYYVDT 345 (353)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9998743
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=0.00083 Score=65.22 Aligned_cols=115 Identities=14% Similarity=0.091 Sum_probs=80.6
Q ss_pred EcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEE
Q 001367 342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 421 (1091)
Q Consensus 342 fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~ 421 (1091)
.-+|.+.+++.|+..+.++--|..+|+..-+.- -...|.+-+.- -|++++.|...|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 345566788999999999999999998764311 11233332222 577899999999999
Q ss_pred EEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec
Q 001367 422 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 422 iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1091)
+-+.++|+.......+. .--......+++. ++..++.|++.+..|..+..++.+.+
T Consensus 77 fl~~~tGs~~w~f~~~~---~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILE---TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EEEecchhheeeeeehh---hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecc
Confidence 99999997655332221 1112234456777 89999999999999999988887754
No 329
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.38 E-value=7.1e-07 Score=62.06 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=35.1
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 363 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd 363 (1091)
++++++.+|.+.|++++|+|+++ ++++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46788999999999999999998 679999999999997
No 330
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=1.2e-06 Score=87.66 Aligned_cols=167 Identities=16% Similarity=0.112 Sum_probs=125.1
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 417 (1091)
+.++||-+-.-+-++.+.+-.|-+-|++||-... + ..++.|.++.|...+.++..|...
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccC
Confidence 4447764432233445566789999999985432 2 256889999999999999999999
Q ss_pred CEEEEEEeeCCccc--ceeEEEeccccCeeEEEEcC-CCCceEEEEeeCCCcEEEEeCCCCce---eEEecCCCcceEEE
Q 001367 418 HIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL 491 (1091)
Q Consensus 418 ~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~ 491 (1091)
|.|...|+..+..- ..... --|...|+++..-. +++ +|++.+.+|.|++||.+--++ +.++.||-..-..+
T Consensus 274 geI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 99999999875221 11112 25888999998877 555 789999999999999987666 88889997766555
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeecCC
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 528 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 528 (1091)
-++..+....+++++.|-..+||.++.+....++...
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 5555666678999999999999999988777665544
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.29 E-value=0.00017 Score=79.90 Aligned_cols=138 Identities=10% Similarity=0.079 Sum_probs=100.9
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..|.--+++..++ +++.|+.-|.+.+++-.+|+..... ..+-.+.+..+..|++..++|.|
T Consensus 34 ~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAag 94 (726)
T KOG3621|consen 34 ARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAAG 94 (726)
T ss_pred ceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhhh
Confidence 3666667788887 5699999999999998888765421 22345677788899999999999
Q ss_pred ECCCEEEEEEeeCCcccceeEEE---eccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC----ceeEEecCCCcc
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHGAP 487 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~---~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~ 487 (1091)
+..|.|.++-+..+........- ..|...|++++|++|+. .+++|...|.|..-.+.+. ...+.+......
T Consensus 95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~ 172 (726)
T KOG3621|consen 95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE 172 (726)
T ss_pred cCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence 99999999988874432221111 13678999999999999 7999999999998887772 112333344566
Q ss_pred eEEEee
Q 001367 488 VYSLCP 493 (1091)
Q Consensus 488 v~~~~~ 493 (1091)
|..+..
T Consensus 173 IVQlD~ 178 (726)
T KOG3621|consen 173 IVQLDY 178 (726)
T ss_pred eEEeec
Confidence 666654
No 332
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.29 E-value=0.0019 Score=68.70 Aligned_cols=278 Identities=14% Similarity=0.133 Sum_probs=137.1
Q ss_pred EEcCCCceEEEEEcCCCc--EEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC-ccEEEEEECCCCCEEEEEECC
Q 001367 341 DFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSK 417 (1091)
Q Consensus 341 ~fspdg~~llasg~~dg~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d 417 (1091)
+|.+||++||.++..||. +.+-|+.+++..+ |+... .......++|+++.++.....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 789999989998877665 6666778887664 33322 222246778999988877667
Q ss_pred CEEEEEEeeCCcccceeEEEeccccCeeEEEEc--CCCCceEEEEee----------------------CCCcEEEEeCC
Q 001367 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDAV 473 (1091)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s--~d~~~~~l~s~~----------------------~d~~i~iwd~~ 473 (1091)
..|+--|+.+.+.. .+ .......+-...|. .|+. .++..- ..+.|.--|+.
T Consensus 102 ~~l~~vdL~T~e~~-~v--y~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEER-VV--YEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EE-EE--EE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEE-EE--EECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 78888888887532 22 23334444445553 4555 332221 13345556777
Q ss_pred CCceeEEecCCCcceEEEeecccCCceEEEEEec---CCe-EEEEecCCCCcee-eecC--CCCcEEEEEEcCCCCEEEE
Q 001367 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGK-IKAWLYDSLGARV-DYDA--PGLGCTRMAYSANGRRLFS 546 (1091)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~-i~iwd~~~~~~~~-~~~~--~~~~i~~~~~s~d~~~l~~ 546 (1091)
+|+....+. -...+..+.|+|.. ..+|..|-+ +.. -+||-+++..... .+.. ....+.-=-|.|||..+..
T Consensus 177 tG~~~~v~~-~~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 177 TGERKVVFE-DTDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp T--EEEEEE-ESS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCceeEEEe-cCccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 776544333 45566777787653 334444432 221 3677665543322 2221 2223455568999998876
Q ss_pred Eec-CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE-EeCC---------------CeEEEEECCC
Q 001367 547 CGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDD---------------HVIKIWDMNK 609 (1091)
Q Consensus 547 ~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~d---------------g~i~iwd~~~ 609 (1091)
.+. .+..+..|.-+|+.+++....... ....-+--++||++++- |+.. .-|++++.+.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~ 329 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA 329 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence 443 334466788899998865433222 12334455788887766 3321 2567788887
Q ss_pred CeeEEEEeCC--------CCCCCCceEEEccCCCEEEEEEC-CCeEEEEE
Q 001367 610 VQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE 650 (1091)
Q Consensus 610 ~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd 650 (1091)
+......... .....-....|+||+++++..++ .|...||-
T Consensus 330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 7654322211 01112357899999998877665 56655553
No 333
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=9e-05 Score=76.23 Aligned_cols=250 Identities=13% Similarity=0.105 Sum_probs=140.1
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
.+.+.+|..-|..++|||..+-|+..++.+..|+|.|+++...+.. +..| ..+.+++|.-
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL 245 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence 4477889999999999999876889999999999999999887754 3345 7899999998
Q ss_pred CC-CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEc------CCCCceEEEEeeCCCcEEEEeCCC--Cce
Q 001367 407 DG-SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------APCKQISVITCGDDKTIKVWDAVT--GSR 477 (1091)
Q Consensus 407 dg-~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~d~~~~~l~s~~~d~~i~iwd~~~--~~~ 477 (1091)
|. .++..|...|.|.|||+...+.......-.-...+|..++.- +-|. +++....+ +..|++.- +..
T Consensus 246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence 65 466667788999999998654322111111122344444432 2333 34444432 45665432 111
Q ss_pred eEEec-CCCcceEEEeecccCCceEEEEEecCCe------EEE-EecCCCCceeee-cCC-CC------cEEEEEEcCCC
Q 001367 478 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK------IKA-WLYDSLGARVDY-DAP-GL------GCTRMAYSANG 541 (1091)
Q Consensus 478 ~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~------i~i-wd~~~~~~~~~~-~~~-~~------~i~~~~~s~d~ 541 (1091)
...+. +..+...++...+..+ ..|++.-.+.+ +-. -|...+..+... ..+ +. .-..+.-.++.
T Consensus 322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 22121 1233444444443322 33443322110 000 011111111100 000 00 11122334566
Q ss_pred CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEc-CCCCEEEEEeCCCeEEEEECC
Q 001367 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~s~dg~i~iwd~~ 608 (1091)
++++..+. ..+.+.+||..+.+.++.+.... +|..++.. -++.-++..-.|..++||..+
T Consensus 401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence 66665543 46779999999999999988754 66666543 234434444456677777654
No 334
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=3.9e-06 Score=84.01 Aligned_cols=135 Identities=16% Similarity=0.223 Sum_probs=101.7
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CCCEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 411 (1091)
.++.|.++.|...+. |+..|...|.|...|+..+..=.. | |.. ---|...|+++..-. ++++|
T Consensus 251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~-----~----~a~------rlyh~Ssvtslq~Lq~s~q~L 314 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNG-----W----CAQ------RLYHDSSVTSLQILQFSQQKL 314 (425)
T ss_pred cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCC-----c----ceE------EEEcCcchhhhhhhccccceE
Confidence 456899999999887 889999999999999977521100 0 000 112889999999888 89999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1091)
.+.+.+|+|++||..--++.+......||...-..+-+.-+...-.+++++.|...+||.+..|..+.++..
T Consensus 315 maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 315 MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 999999999999998766644455678887655444443332222788999999999999999999988754
No 335
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00024 Score=80.43 Aligned_cols=199 Identities=13% Similarity=0.131 Sum_probs=127.7
Q ss_pred EECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC-----cEEEEeCCCC--
Q 001367 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-----TIKVWDAVTG-- 475 (1091)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~-----~i~iwd~~~~-- 475 (1091)
+|++.+..+|.|+.+|.|.+.+-.- +....+..+...+...-+.-+++. +|++.+.|+ .++|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~----~~~~~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF----QLIRGFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc----eeeehheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCC
Confidence 4788999999999999887776432 222345666666333444444543 677777665 4899998632
Q ss_pred ----cee--EEecC-----CCcceEEEeecccCCceEEEEEecCCeEEEEecCC----CCceeeecCCCCcEEEEEEcCC
Q 001367 476 ----SRT--YSFEG-----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSAN 540 (1091)
Q Consensus 476 ----~~~--~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~s~d 540 (1091)
.++ +.+.. ...++.+++++. +-..+|+|-.+|.|..+.=+- +...........+|+++++..+
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~--~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSE--DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEc--cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 233 12222 245677777753 567899999999999884322 1222233345569999999999
Q ss_pred CCE-EEEEecCCCCceEEEEEecCCceee-EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001367 541 GRR-LFSCGTSKEGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 541 ~~~-l~~~~~~~~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1091)
++. ++++. ...|.+|.+....+. ..+..+ +..+.|..+++....+++++. ..+.+|+.....+-..+.
T Consensus 183 ~~s~lFv~T-----t~~V~~y~l~gr~p~~~~ld~~---G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVAT-----TEQVMLYSLSGRTPSLKVLDNN---GISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEe-----cceeEEEEecCCCcceeeeccC---CccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 987 33333 334888888744422 223333 478899999887665666654 468999987655555554
No 336
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=5.5e-05 Score=84.83 Aligned_cols=188 Identities=12% Similarity=0.127 Sum_probs=129.4
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 922 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~ 922 (1091)
..++|++++ +++++-|+.+|.|++++.+. .. .+...|+.. ..+|.+++|||.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456778885 46999999999999999773 33 444446554 56899999999999999999887553322
Q ss_pred eeeeccCCCcCCCCCceEEEEcCC-----CCEEEEEecCeEEEEEcCCcce-eeeeecCCccCEEEEEEeeCCCEEEEEE
Q 001367 923 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 923 ~~~~~~~~~~~~~~~i~~l~fs~d-----g~~la~~~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
..++ .++.+++++|| .+.+++|....+.++.-.-... .........++|.++.|. |.++|=++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence 2221 25889999998 4566665443377776432111 111233337899999987 67888777
Q ss_pred cCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecC
Q 001367 997 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 997 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
.+| |+|||+.++..+..+.+....+.. ...+..+.|.+ ...|+.| ...+|.+..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~----e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVRP----ELFPPHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCCc----ccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 666 999999999998887755533322 34555678886 3555554 56678888887
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0006 Score=77.41 Aligned_cols=202 Identities=11% Similarity=0.110 Sum_probs=129.2
Q ss_pred EEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCcc-EEEEEECCCCCEEEEEECCC-
Q 001367 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWSPDGSLLGVAYSKH- 418 (1091)
Q Consensus 341 ~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~spdg~~las~~~d~- 418 (1091)
+|++.+. .+|.|+.+|.|.+.+-.- +.+.. +..+... |..+-...+..+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s~-~~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSSF-QLIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecccc-eeeeh-------------------heecchhhhhHhhcccCceEEEEEeecCC
Confidence 4567776 679999999888776321 11111 3334445 44444444446888776654
Q ss_pred ----EEEEEEeeCCcccc---ee--EEEec-----cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC----CCceeEE
Q 001367 419 ----IVQLYAYHGGSDAR---QQ--LEIDA-----HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV----TGSRTYS 480 (1091)
Q Consensus 419 ----~i~iwd~~~~~~~~---~~--~~~~~-----h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~----~~~~~~~ 480 (1091)
.++||+++.-+.-. .. ..+.. ...++.+++.+.+-+ .+|.|-.+|.|..+.-+ .|....-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceee
Confidence 59999997432111 11 11222 345789999999977 78999999999988422 1222222
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce-eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
......+|+.+++.. ++..++.+.....|.+|.+...... ..+..++.+..|.++++....+++++ ...+.+
T Consensus 167 ~~~~~~pITgL~~~~--d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~f 239 (933)
T KOG2114|consen 167 SHRGKEPITGLALRS--DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLYF 239 (933)
T ss_pred eccCCCCceeeEEec--CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEEE
Confidence 233467899999854 4445445555678899998855533 34777888899999988777566665 445999
Q ss_pred EecCCceeeEEEe
Q 001367 560 WNESEGAIKRTYQ 572 (1091)
Q Consensus 560 wd~~~~~~~~~~~ 572 (1091)
|+......-..|.
T Consensus 240 Y~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 240 YDSDGRGPCFAFE 252 (933)
T ss_pred EcCCCcceeeeec
Confidence 9987666555555
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.09 E-value=7.6e-05 Score=84.63 Aligned_cols=186 Identities=14% Similarity=0.113 Sum_probs=141.2
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEE
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 536 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1091)
.++.|+....+..+|+.+++..+...-..+.|.-++. +++.+.+|...|+|.+-|.++.+.+.++..|.+.+..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD-- 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD-- 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceee--
Confidence 5777888888999999998887777655555666654 6679999999999999999999999999999998865
Q ss_pred EcCCCCEEEEEecCCC-----CceEEEEEecCCceeeEEEecccccccceEEEEEcCC-CCEEEEEeCCCeEEEEECCC-
Q 001367 537 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK- 609 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~s~dg~i~iwd~~~- 609 (1091)
|+-.|+.|++||.+.. .|..|.+||++..+.+..+..+. ...-+.|+|. ...+++++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~----~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY----GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc----CchhhhhcccccceEEEEecccceeecccccc
Confidence 5567899999987542 36679999999887776665544 2245677776 35677788999999988332
Q ss_pred Cee-EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 610 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 610 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
+.+ ......+...+.+..+.+++++..++.|..+|.|.+|.-.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 111 1122222222358899999999999999999999999844
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.07 E-value=0.0052 Score=71.13 Aligned_cols=137 Identities=12% Similarity=0.092 Sum_probs=78.3
Q ss_pred EEEEEecCCeEEEEecCCCCceeeecCCCC------cEE--EEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEe
Q 001367 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGL------GCT--RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1091)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~i~--~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1091)
.++.++.++.+.-.|..+++.+........ .+. .+... ++..++.+.. ++.|+-+|..+|+.+-.+.
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKFG 137 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeeec
Confidence 566677778888888888777765543322 000 11111 2245555543 6679999999999887766
Q ss_pred ccccc--ccceE-EEEEcCCCCEEEEEe---------CCCeEEEEECCCCeeEEEEeCCCCC------------------
Q 001367 573 GLQLQ--HNSVS-VVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGL------------------ 622 (1091)
Q Consensus 573 ~~~~~--~~~v~-~v~~~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~------------------ 622 (1091)
..... ...+. +..+. +..++.++ .+|.++.+|..+|+.+-........
T Consensus 138 ~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 53300 00011 11121 24455553 3688999999999988777543110
Q ss_pred CCC-ceEEEccCCCEEEEEECCC
Q 001367 623 PEN-PRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 623 ~~v-~~v~~s~~~~~l~~~~~dg 644 (1091)
..+ ...++.+.+..+++++.++
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g 238 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNG 238 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCC
Confidence 001 1344555567777777665
No 340
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.06 E-value=2.5e-06 Score=65.52 Aligned_cols=53 Identities=34% Similarity=0.595 Sum_probs=42.1
Q ss_pred hHHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhhhhhhhhcCCCH
Q 001367 37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 90 (1091)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~ 90 (1091)
++..++++|+.|+|+.|++.++..........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 468899999999999999999876332222222 49999999999999988764
No 341
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.04 E-value=0.0011 Score=77.15 Aligned_cols=212 Identities=16% Similarity=0.138 Sum_probs=120.0
Q ss_pred CCeEEEEEcCCCCcEEEEEe------CCC--eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCC-CcEEEE-
Q 001367 843 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVW- 912 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~------~dg--~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D-g~i~vw- 912 (1091)
..+...+++| +|+.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|++.+.. ..+++.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999 677666554 244 5555564 23332223332 37889999999988877543 222222
Q ss_pred ----------EcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEE---EEcCCcce-e---eeeecC
Q 001367 913 ----------DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTC-L---KQWFPI 975 (1091)
Q Consensus 913 ----------d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~v---wd~~~~~~-~---~~~~~~ 975 (1091)
+++.++.. + .....|..+.|||||+.+|...+++|++ -....|+. + ..+..+
T Consensus 426 ~~~~gql~~~~vd~ge~~-----~------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 426 DPATGQLARTPVDASAVA-----S------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred cCCCceEEEEeccCchhh-----h------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecc
Confidence 33332210 0 0113699999999999999976788877 45455541 1 111222
Q ss_pred CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEE
Q 001367 976 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1055 (1091)
Q Consensus 976 h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~ 1055 (1091)
-...+.++.|..++.++ ++..++...+|.+.-.-......+...+. ..+ ..++-.| ..+.++..+|.+.
T Consensus 495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~-----~~v--~~vaa~~---~~iyv~~~~g~~~ 563 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLS-----APV--VAVAASP---STVYVTDARAVLQ 563 (591)
T ss_pred cCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCcc-----Cce--EEEecCC---ceEEEEcCCceEE
Confidence 23446889999999855 55555555566544332221111111111 112 2345554 3566666666444
Q ss_pred EEecCCCCCCcccCCCCccccCCCC
Q 001367 1056 VIEPNEPGDTWAVLPPDEIVGDQPT 1080 (1091)
Q Consensus 1056 ~w~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1091)
+=.-...+..|.+.|.+....+.|.
T Consensus 564 l~~~~~~~~~W~ev~~l~g~~~~p~ 588 (591)
T PRK13616 564 LPNSDSGDQYWREVPGLMGPRAAPV 588 (591)
T ss_pred ecCCCCCCCCceECccccCCCcccc
Confidence 4333345578999998876665553
No 342
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00049 Score=77.50 Aligned_cols=186 Identities=12% Similarity=0.140 Sum_probs=123.6
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.+.+++++ ++.++.++.+|.+++++.+.+.. +. + .|... ..+|.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------~~-------~---~~s~~------~~~Ge 84 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------TN-------F---DHSSS------ILEGE 84 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCccc------------------cc-------c---ccccc------ccCCc
Confidence 34444443 56688888899999987543210 00 0 02111 55899
Q ss_pred EEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCC----CCcEEEEEeCCCeEEEEeccC-c-ceeeeeccccCC
Q 001367 815 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARS-S-EVISKLEGHSKR 887 (1091)
Q Consensus 815 ~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----~~~~la~g~~dg~i~iwd~~~-~-~~~~~l~~h~~~ 887 (1091)
++++++ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+..| +.++.-.= | +....+..-.|+
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 999999 7999999998888776665 4568999999993 256788899888 77775321 1 111235556789
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcC
Q 001367 888 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 964 (1091)
Q Consensus 888 V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~ 964 (1091)
|.++.|. |+++|-++.+| |+|+|+.++.... .++.+............+.|.++.+ |+.|-..+|+|..++
T Consensus 163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred eEEEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 9999995 88999998888 9999999865433 2222222222122345677776655 566777788888776
No 343
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.00 E-value=9.2e-06 Score=49.72 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHhc
Q 001367 6 KDLVFLILQFLNEEGFTESAHMLERES 32 (1091)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~l~~Es 32 (1091)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999997
No 344
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.98 E-value=0.0051 Score=71.20 Aligned_cols=244 Identities=11% Similarity=0.144 Sum_probs=136.9
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEecCCCCC-----e-EEEEEcCCCCcEEEEEe---------CCCeEEEEeccCcce
Q 001367 813 DAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----A-TSLAFNPHDNNVIAIGM---------DDSTILIYNARSSEV 877 (1091)
Q Consensus 813 g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~-----i-~~l~~s~~~~~~la~g~---------~dg~i~iwd~~~~~~ 877 (1091)
++.++...++.|..+|.++|+.+-++...... + ....+. ++ ++++++ .+|.+.-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 44444444899999999999999877643321 1 122332 23 444454 367899999999998
Q ss_pred eeeeccccC--------------------Ce-EEEEECCCCCEEEEEeCCC------------------cEEEEEcCCCc
Q 001367 878 ISKLEGHSK--------------------RV-TGLVFSDALNILVSSGGDA------------------QIFVWDVDGWG 918 (1091)
Q Consensus 878 ~~~l~~h~~--------------------~V-~~l~~spdg~~las~s~Dg------------------~i~vwd~~~~~ 918 (1091)
+........ .| ...++.+.+..++.++.++ .|.-.|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 766543211 01 1234455566777776655 68888998887
Q ss_pred eeeeeeeeccC-----CCcCCCCCceEEEEcCCCC---EEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCC
Q 001367 919 IQTCRSLQTPD-----GVMTLAPSETHIQFHKDQT---RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC 989 (1091)
Q Consensus 919 ~~~~~~~~~~~-----~~~~~~~~i~~l~fs~dg~---~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg 989 (1091)
..=........ +... ..+..+. .-+|. .+++ +.+|.+...|.++|+.+...... ...++.+|
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~--p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~-- 338 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQ--PSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP-- 338 (488)
T ss_pred EEEEeeCCCCCCcccccCCC--CeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--
Confidence 43211111110 1000 0011111 12343 3444 46899999999999988764321 11233344
Q ss_pred CEEEEE------------------EcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecC
Q 001367 990 RMVFTS------------------FVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1051 (1091)
Q Consensus 990 ~~l~t~------------------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~d 1051 (1091)
..++.+ ..+|.+.-.|+.+|+.+-+...........-+.......+.. .+..+++|+.|
T Consensus 339 ~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~d 415 (488)
T cd00216 339 GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAAD 415 (488)
T ss_pred ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCC
Confidence 223322 235788888999998775444220000000000011001112 25789999999
Q ss_pred CcEEEEecCCCCCCcccCCC
Q 001367 1052 GEVYVIEPNEPGDTWAVLPP 1071 (1091)
Q Consensus 1052 g~v~~w~~~~~~~~~~~~~~ 1071 (1091)
|.|+.+|..+++..|...-+
T Consensus 416 G~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 416 GYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred CeEEEEECCCCceeeEEECC
Confidence 99999999999999986543
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00064 Score=75.66 Aligned_cols=196 Identities=19% Similarity=0.141 Sum_probs=117.6
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCC---CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~d---g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 401 (1091)
...+.+..-...+..-+|+|+++.+....-.. ..+.++++.+++.....+ -.+.-..
T Consensus 183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~~ 242 (425)
T COG0823 183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNGA 242 (425)
T ss_pred cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccCC
Confidence 34455555556888889999998755443322 359999999987665422 2233445
Q ss_pred EEECCCCCEEEEEE-CCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCc--EEEEeCCCCc
Q 001367 402 VVWSPDGSLLGVAY-SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGS 476 (1091)
Q Consensus 402 l~~spdg~~las~~-~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~ 476 (1091)
.+|||||++||.+. .|+ .|.+.|+.++...+ +..-.+.-+.-.|+|||++ ++++.+..|. |.+.|++.+.
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCc
Confidence 68999999998874 444 57777888766222 3333333447789999996 3444555554 5666766555
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecC-Ce--EEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
. ..+......-. ....++||.+++..+.. |. |.+.|+.+...... ...........+.++++.+...+.
T Consensus 318 ~-~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~-lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 318 V-TRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRI-LTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred e-eEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEE-ccccccCCCCCcCCCCceEEEecc
Confidence 4 22222211111 22336788888777643 44 55666655553222 222223345578889988877654
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.00066 Score=75.52 Aligned_cols=175 Identities=15% Similarity=0.157 Sum_probs=110.5
Q ss_pred eEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEe---CC-CeEEEEeccCcceeeeeccccCCeEEEEECCCCC
Q 001367 823 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DD-STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 898 (1091)
Q Consensus 823 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~---~d-g~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 898 (1091)
.+.+-|.. +...+.+......+..-+|+| +++.++..+ .. ..++++++.+++....+. ..+.-...+|||||+
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 34444544 555555555566777788999 666655442 22 469999999886543333 223344578999999
Q ss_pred EEEEE-eCCCc--EEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEec--C--eEEEEEcCCcceeee
Q 001367 899 ILVSS-GGDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T--HLAIYEAEELTCLKQ 971 (1091)
Q Consensus 899 ~las~-s~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d--~--~i~vwd~~~~~~~~~ 971 (1091)
.|+-+ ..||. |.+.|+.++... .+....+. -..-.|+|||++|+-.+| | .|.+++.+.+...+.
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~---~Lt~~~gi------~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGI------NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcce---ecccCCcc------ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence 87754 45664 666677765411 12333332 236789999999998544 3 588888887766443
Q ss_pred eecCCccCEEEEEEeeCCCEEEEEEcC-Cc--EEEEeCCCCce
Q 001367 972 WFPISSVPISQATFSCDCRMVFTSFVD-GT--LSIHEASNLEV 1011 (1091)
Q Consensus 972 ~~~~h~~~v~~v~fs~dg~~l~t~~~d-g~--v~iwd~~~~~~ 1011 (1091)
...+ +.-....+||||++++..+.. |. |.+.++.++..
T Consensus 322 T~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 322 TFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred eccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 3322 222277899999999877743 44 77777777664
No 347
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.90 E-value=0.014 Score=66.61 Aligned_cols=251 Identities=15% Similarity=0.104 Sum_probs=136.7
Q ss_pred CcEEEEEcCCCceEEEEEcCCCc----EEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGD----TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~----i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.+...++||||++++.+-+..|. +++.|+.+|+.+.. . +.. ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IEN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------ccc--cccceEEEeCCCCEE
Confidence 44467899999977666555554 99999999976643 1 111 112239999999888
Q ss_pred EEEECC-----------CEEEEEEeeCCcccceeEEEeccccC--eeEEEEcCCCCceEEEEeeC-C-CcEEEEeCCCC-
Q 001367 412 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGD-D-KTIKVWDAVTG- 475 (1091)
Q Consensus 412 as~~~d-----------~~i~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~d~~~~~l~s~~~-d-~~i~iwd~~~~- 475 (1091)
+....+ ..|+.|.+.++..-. ...+.+.... ...+..++|++.+++.+.+. + ..+.+.|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 776433 246777776654321 1234443333 56888999999633323322 2 35788888764
Q ss_pred ---ceeEEecCCCcce-EEEeecccCCceEEEEE---ecCCeEEEEecCCCCc---eeeecCCCCcEEEEEEcCCCCEEE
Q 001367 476 ---SRTYSFEGHGAPV-YSLCPHAKENIHFIFSI---SVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 476 ---~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
.....+......+ ..+... ++.+++.. ...+.|...++..... ...+..+...+.-..+...+.+|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 2333333333333 333321 22333333 2335666677776653 223444444322233334556666
Q ss_pred EEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE--Ee--CCCeEEEEECCCCeeE
Q 001367 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLL 613 (1091)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~--~s--~dg~i~iwd~~~~~~~ 613 (1091)
.... .++...|+++++..+.......... .+.|..+...++++.+.. .| .-++++.||+.+++..
T Consensus 341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 341 LSYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 5543 2457789999998444444444433 345666665666655543 23 3467888899888764
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.88 E-value=0.00071 Score=74.30 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=81.5
Q ss_pred CCeeEEEecC-CCCEEEEEe-----CCe----EEEEEccCceeEEE---ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 001367 802 EAVPCFALSK-NDAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 868 (1091)
Q Consensus 802 ~~v~~l~~s~-dg~~la~~~-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~ 868 (1091)
....++.||. +...+.+.. +|. -.+|+....+..+. --.....+.+++++| +...|+.|+.||+|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence 3446667775 333343332 232 45677765543321 123667899999999 888999999999999
Q ss_pred EEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 001367 869 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 918 (1091)
Q Consensus 869 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~ 918 (1091)
+||...+.. .+..+.-..+.++|+|+|..+++|+..|.+.+||+.-+.
T Consensus 285 LyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 285 LYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999877633 233344567889999999999999999999999997644
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.88 E-value=0.008 Score=66.33 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=81.2
Q ss_pred ceEEEEcC-CCCEEEEE-----ecC----eEEEEEcCCcc--eeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 938 ETHIQFHK-DQTRFLLV-----HET----HLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 938 i~~l~fs~-dg~~la~~-----~d~----~i~vwd~~~~~--~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
..++.||- +...+.+. .+| .-.+|+....+ ++..........|.+++++|+...++.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 46778876 33444331 233 25577776543 33333345688999999999999999999999999999
Q ss_pred CCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1006 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
...+..... ...+.|..++||| +|..+++|+..|.+.+||+--+.
T Consensus 288 ~~~~~t~~~------------ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 288 TTRGVTLLA------------KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCCeeeee------------eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 988744422 1124456799999 58999999999999999975443
No 350
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.87 E-value=1.9e-05 Score=52.67 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001367 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1091)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~ 35 (1091)
.++++.++|+|||...||.+||++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.87 E-value=0.0051 Score=67.84 Aligned_cols=282 Identities=13% Similarity=0.150 Sum_probs=143.7
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.|..+.|+++...++++...|.+.+|.+..+........... .+.. -..+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~-----~~~~------------------~~~~~~~---- 55 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPD-----LDYN------------------FRRFSLN---- 55 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------------------------S--GG----
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcc-----cCcc------------------ccccccc----
Confidence 578899999988899999999999999876543210000000 0000 0000000
Q ss_pred EEEEEeCCeEEEEEcc---------CceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee--ecc
Q 001367 815 YLFSASGGVISLYIVM---------TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG 883 (1091)
Q Consensus 815 ~la~~~dg~i~iwd~~---------~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~--l~~ 883 (1091)
++.-.+-|+. ...+...+....+.|++++.|. =| ++|+|..+|.+.|.|++....+.. +..
T Consensus 56 ------~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~-iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~ 127 (395)
T PF08596_consen 56 ------NSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD-IG-FVAIGYESGSLVVIDLRGPAVIYNENIRE 127 (395)
T ss_dssp ------GSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred ------CCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC-Cc-EEEEEecCCcEEEEECCCCeEEeeccccc
Confidence 0001111111 1122333444578999999985 44 999999999999999987665533 222
Q ss_pred ------ccCCeEEEEECC-----CC---CEEEEEeCCCcEEEEEcCC-C-ceeeeeeeeccCCCcCCCCCceEEE-EcCC
Q 001367 884 ------HSKRVTGLVFSD-----AL---NILVSSGGDAQIFVWDVDG-W-GIQTCRSLQTPDGVMTLAPSETHIQ-FHKD 946 (1091)
Q Consensus 884 ------h~~~V~~l~~sp-----dg---~~las~s~Dg~i~vwd~~~-~-~~~~~~~~~~~~~~~~~~~~i~~l~-fs~d 946 (1091)
....|+++.|+. |+ -.|+.|...|.+.+|.+.. . ..-..........+.. .+..+. |+.+
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~---~i~~I~~i~~~ 204 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDS---PILSIIPINAD 204 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETT
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCC---ceEEEEEEECC
Confidence 334688888862 33 4678899999999998862 1 1111111111111211 344433 4322
Q ss_pred ---------------------CCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEe-----eCCCEEEEEEcCCc
Q 001367 947 ---------------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-----CDCRMVFTSFVDGT 1000 (1091)
Q Consensus 947 ---------------------g~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs-----~dg~~l~t~~~dg~ 1000 (1091)
..+++++++..++++...+.+...... ........+.+- ..+..|++-..+|.
T Consensus 205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~ 283 (395)
T PF08596_consen 205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS 283 (395)
T ss_dssp T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc
Confidence 125666889999999999888776655 222333445553 35677888899999
Q ss_pred EEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1001 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1001 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
|+++.++..+.+......... ....+. ..++++ +|..++-. ....+.++.+....
T Consensus 284 i~i~SLP~Lkei~~~~l~~~~----d~~~~~--~ssis~-~Gdi~~~~-gpsE~~l~sv~~~~ 338 (395)
T PF08596_consen 284 IRIYSLPSLKEIKSVSLPPPL----DSRRLS--SSSISR-NGDIFYWT-GPSEIQLFSVWGEG 338 (395)
T ss_dssp EEEEETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE--SSSEEEEEEEES--
T ss_pred EEEEECCCchHhhcccCCCcc----cccccc--ccEECC-CCCEEEEe-CcccEEEEEEEccC
Confidence 999999999988777632111 112222 234566 36655444 45566666664443
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.86 E-value=0.006 Score=62.16 Aligned_cols=197 Identities=9% Similarity=0.090 Sum_probs=111.9
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+.|.+-.+++..++|.|+...|+|+....+.|...+. +|+.+.... +.+ -+..-.|++..+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~ 75 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGN 75 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-ST
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECC
Confidence 4566767789999999997779999999999988886 577765422 333 357888999988
Q ss_pred CCEEEEEECCCEEEEEEeeCCcc-c--ce--eEEEe---ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC---Cc
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSD-A--RQ--QLEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GS 476 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~-~--~~--~~~~~---~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~ 476 (1091)
+.++++.-.++.+.+.++..... + .. ...+. .+...+-.++|.+.++. |+.+-...-..++.+.. +.
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS
T ss_pred CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCcc
Confidence 88888776789999999844321 1 11 11111 23456899999999884 44445555555555442 21
Q ss_pred eeEE--------ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC---------CcEEEEEEcC
Q 001367 477 RTYS--------FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSA 539 (1091)
Q Consensus 477 ~~~~--------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~ 539 (1091)
.+.. .......+.++++++. .+++++....+..|.++| ..++....+.... ...-.++|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred ceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 1111 1123345778888765 567888888889999998 4444433332222 2467899999
Q ss_pred CCCEEEEE
Q 001367 540 NGRRLFSC 547 (1091)
Q Consensus 540 d~~~l~~~ 547 (1091)
+|+..++.
T Consensus 232 ~G~LYIvs 239 (248)
T PF06977_consen 232 DGNLYIVS 239 (248)
T ss_dssp T--EEEEE
T ss_pred CCCEEEEc
Confidence 99766664
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.86 E-value=0.0037 Score=68.93 Aligned_cols=255 Identities=14% Similarity=0.139 Sum_probs=133.8
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCcee------e------------eceeEEecccccc------ceeeee
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------I------------RNFKVWDIGACSM------LFKTAL 391 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~------~------------~~~~~~~~~~~~~------~~~~~~ 391 (1091)
.|+++.|+++..- ||+|...|.|.||.+...+.-. . ..-.+-|+..... ..+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999653 5888999999999875433221 0 0123445443222 234445
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEec------cccCeeEEEEc---C--CC-CceEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFS---A--PC-KQISVI 459 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s---~--d~-~~~~l~ 459 (1091)
+....++|++++.| |=.++|.|..+|.+.|.|++....+.. ..+.. ....|+++.|+ . |+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66678999999998 667999999999999999976654332 12222 23468888886 2 22 224788
Q ss_pred EeeCCCcEEEEeCC--C-Ccee----EEecCCCcceEEEeecccCCc-------------------eEEEEEecCCeEEE
Q 001367 460 TCGDDKTIKVWDAV--T-GSRT----YSFEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA 513 (1091)
Q Consensus 460 s~~~d~~i~iwd~~--~-~~~~----~~~~~~~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~i 513 (1091)
.|...|.+.+|.+. . +... .....+.++|..+.......| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999764 1 2211 112246677766653211111 23455556788999
Q ss_pred EecCCCCceeeecCCCCcEEEEEEc-----CCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc-ccccceEEEEEc
Q 001367 514 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFD 587 (1091)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s-----~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~v~~~ 587 (1091)
+...+.+..............+++- ..+..|++... ++.++++.+..-+.+....-.. .....+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888777666555332334444553 24555555554 6679999998877776665532 011233445566
Q ss_pred CCCCEEEEEe
Q 001367 588 TAKDQILAAG 597 (1091)
Q Consensus 588 ~~~~~l~~~s 597 (1091)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 6666554443
No 354
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.85 E-value=0.0059 Score=65.07 Aligned_cols=229 Identities=12% Similarity=0.049 Sum_probs=110.6
Q ss_pred EEECCCCCEEEEEEC-C--CEEEEEEeeCCcccceeEEEeccc-cCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce
Q 001367 402 VVWSPDGSLLGVAYS-K--HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1091)
Q Consensus 402 l~~spdg~~las~~~-d--~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1091)
=+|.+||++|+.++. | ..+.+-|+.+++..+ |.... .......++|+++ .++-......|+-.|+++.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence 367889988877664 4 467888888876433 33332 2233567788888 455454556888899999877
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEec----------------------CCeEEEEecCCCCceeeecCCCCcEEEE
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISV----------------------DGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1091)
...+......+-...+..+.++..++..-. ...|..-|+.+++....+. ....+.-+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 655655666665566655556655544321 1234444556544433333 44467788
Q ss_pred EEcCCCC-EEEEEecCCCCce-EEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEEe-----CCCeEEEEEC
Q 001367 536 AYSANGR-RLFSCGTSKEGES-FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----DDHVIKIWDM 607 (1091)
Q Consensus 536 ~~s~d~~-~l~~~~~~~~~~~-~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-----~dg~i~iwd~ 607 (1091)
.|+|... .|+.|.. +..+. .-+||-+.+ +...+.+..+. ....+.-=.|.|||..+.--+ .+..|.-+|.
T Consensus 194 ~fsP~dp~li~fCHE-Gpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHE-GPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEETTEEEEEEEEE--S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred ccCCCCCCEEEEecc-CCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 8999554 4555543 22222 124454432 22233333222 123445557899998776522 3556777889
Q ss_pred CCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC
Q 001367 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643 (1091)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 643 (1091)
.+++........ .......++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 888665433322 23556677899877654443
No 355
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.80 E-value=0.11 Score=60.30 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=42.9
Q ss_pred CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccc
Q 001367 822 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 884 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h 884 (1091)
|.|.-+|+.+++..-............... .+.+++.++.||.++.+|..+|+.+...+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 568889999998887765433222222222 3347777888999999999999998777643
No 356
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=0.012 Score=58.47 Aligned_cols=256 Identities=17% Similarity=0.168 Sum_probs=144.3
Q ss_pred ceEEEEEcCCCCEE-EEEeCCCe-EEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC-----CeEEEEECC
Q 001367 580 SVSVVHFDTAKDQI-LAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETP 652 (1091)
Q Consensus 580 ~v~~v~~~~~~~~l-~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~ 652 (1091)
.-..++|+|....- +.+-.-|+ ..++|....+...++......-.--.=+|||||.+|+..-+| |.|-|||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 34557788876543 44555555 578999988877776554332222345799999999876543 678888876
Q ss_pred CC-CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCcc
Q 001367 653 ES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 731 (1091)
Q Consensus 653 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 731 (1091)
.+ ..+.++..
T Consensus 149 ~~fqrvgE~~t--------------------------------------------------------------------- 159 (366)
T COG3490 149 EGFQRVGEFST--------------------------------------------------------------------- 159 (366)
T ss_pred cccceeccccc---------------------------------------------------------------------
Confidence 43 11111111
Q ss_pred ccccEEEEEEecCCCeEEEeecCceEEEe-ecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEec
Q 001367 732 KANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 810 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~i~vw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 810 (1091)
|.-.-..+.+.+||+.++.+. |-|... ++...+.+.+.- .-.+.+.+..+|..+.+..++..-+...+..++.-
T Consensus 160 ~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsM---ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g 234 (366)
T COG3490 160 HGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSM---EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG 234 (366)
T ss_pred CCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhc---CccEEEEeccccchhhhccCchhhhhcceeeeeeC
Confidence 222334567777887665543 333333 222222211111 11233455567776666666644467788999999
Q ss_pred CCCCEEEEEe-CC----e-EEEEEccCceeEEEecCC-------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce
Q 001367 811 KNDAYLFSAS-GG----V-ISLYIVMTFKTILTIMPP-------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 877 (1091)
Q Consensus 811 ~dg~~la~~~-dg----~-i~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~ 877 (1091)
+||..++.+. .| . -.+=-...++.+.-+..+ ...|-+++.+.+++-..++.-..+...+||..+|..
T Consensus 235 ~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 235 RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence 9998887764 11 1 111112234444433322 245778888875555555555666889999999987
Q ss_pred eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 878 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 878 ~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
+..-.- .....++- .+.-++..+.+|.+.++.
T Consensus 315 v~~a~l--~daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 315 VSEAAL--PDAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred Eecccc--ccccccee--ccCceEEecCCceEEecc
Confidence 643221 11222322 333355566778787763
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.77 E-value=0.0035 Score=70.03 Aligned_cols=220 Identities=14% Similarity=0.151 Sum_probs=114.3
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
....+.++|+|+.+++ ..+|...++.-.... - ...+....++|+++++
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r-----------------------~--------k~~G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR-----------------------N--------KAFGSGLSFVWSSRNR 81 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTE-----------------------E--------EEEEE-SEEEE-TSSE
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCc-----------------------c--------cccCceeEEEEecCcc
Confidence 4568999999997777 667777776521100 0 0223456788888777
Q ss_pred EEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEEC
Q 001367 815 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 894 (1091)
Q Consensus 815 ~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s 894 (1091)
+.+.-..++|.|+.--+.+....+..+ ..+..+-. |.+|...+.+ .|.+||+.+++.+.++... +|..+.||
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 555555788999743333333344322 23333332 6677766644 8999999999999998743 38999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCC---------ceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCC
Q 001367 895 DALNILVSSGGDAQIFVWDVDGW---------GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 965 (1091)
Q Consensus 895 pdg~~las~s~Dg~i~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~ 965 (1091)
++|.++|-.+.+ .+.|++.+.. .......+.... ..|.+.+|..| .++-...+.++-+ -.
T Consensus 154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~------~~IkSg~W~~d--~fiYtT~~~lkYl--~~ 222 (443)
T PF04053_consen 154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS------ERIKSGCWVED--CFIYTTSNHLKYL--VN 222 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-------S--SEEEEETT--EEEEE-TTEEEEE--ET
T ss_pred CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec------ceeEEEEEEcC--EEEEEcCCeEEEE--Ec
Confidence 999999988866 4888776543 000011121111 25778888777 3333333365552 23
Q ss_pred cce--eeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 966 LTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 966 ~~~--~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
|+. +..+ ..++.=+.+.+....+.....|+.|..+.++..
T Consensus 223 Ge~~~i~~l----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 223 GETGIIAHL----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp TEEEEEEE-----SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred CCcceEEEc----CCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 332 2221 345566677776677777778888888776643
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.73 E-value=0.02 Score=64.32 Aligned_cols=199 Identities=17% Similarity=0.163 Sum_probs=110.5
Q ss_pred EEEecCCCCEEEEEeCC------------eEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEecc
Q 001367 806 CFALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 873 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~ 873 (1091)
.++.+|.|..+|...+. .|+||+.. |+.+.++.-..+.+.++.|+. +.. |++...||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLF 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCC
Confidence 45667777777776544 58889854 666666554448999999997 554 4557789999999986
Q ss_pred Ccce-------eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeee-eccCCCc--CCCCCceE-EE
Q 001367 874 SSEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL-QTPDGVM--TLAPSETH-IQ 942 (1091)
Q Consensus 874 ~~~~-------~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~--~~~~~i~~-l~ 942 (1091)
|+. +....-....+....+..+|-.+. ..++.+.+-+--..... .+.+ ..+.... ........ ..
T Consensus 110 -G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~-~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 110 -GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVK-LRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred -CceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccch-hhccccCCCcccccccccccccceE
Confidence 333 111111222233334444553333 34444433322111100 0111 1111100 00001111 34
Q ss_pred EcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 943 FHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 943 fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
++.+....+. ..++.+.+.+....+. . ...+++..++.||+|++||.-..+|.+.+....-.+..+.+.
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 5555554444 4555666555332211 1 124689999999999999999999999998877666666555
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.011 Score=65.83 Aligned_cols=207 Identities=13% Similarity=0.154 Sum_probs=144.2
Q ss_pred CeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC---CCeEEEEeccCcce
Q 001367 803 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEV 877 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~---dg~i~iwd~~~~~~ 877 (1091)
....+++++++..+.... ++.|.+.|..+.+......... ....++++| +++.+.++.. ++++.+.|..+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 445788899988666555 5899999988777776654322 667899999 5555554443 68999999999888
Q ss_pred eeeeccccCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--e
Q 001367 878 ISKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 954 (1091)
Q Consensus 878 ~~~l~~h~~~V~~l~~spdg~~las~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~ 954 (1091)
+.....-..+ ..++++|+|+.+..+ ..++.|.+.|..+..... ...............+.++|+|.++.+. .
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEecc
Confidence 7775443344 889999999966554 478999999987744221 1100001111245689999999977763 2
Q ss_pred c--CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-CcEEEEeCCCCceEEEee
Q 001367 955 E--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 955 d--~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-g~v~iwd~~~~~~~~~~~ 1016 (1091)
+ +.+...|..++................+.++|+|+++.+.... +.|.+-|..+......+.
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 2 5899999988877665222211145678999999998877444 889999999887776554
No 360
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.71 E-value=0.035 Score=63.40 Aligned_cols=248 Identities=13% Similarity=0.121 Sum_probs=129.2
Q ss_pred ccEEEEEECCCCCEEEEE-ECC----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEe-eC-------
Q 001367 397 VSVNRVVWSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GD------- 463 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~-~~------- 463 (1091)
..+..+++||||+++|.+ +.. ..++++|+.+|+.+.. .+... ....+.|.+|++. ++.+. ..
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccC
Confidence 345578999999999976 333 3699999999865432 12211 1223999999985 33333 22
Q ss_pred --CCcEEEEeCCCCcee--EEecCCCcce--EEEeecccCCceEEEEEecC----CeEEEEecCCC----CceeeecCCC
Q 001367 464 --DKTIKVWDAVTGSRT--YSFEGHGAPV--YSLCPHAKENIHFIFSISVD----GKIKAWLYDSL----GARVDYDAPG 529 (1091)
Q Consensus 464 --d~~i~iwd~~~~~~~--~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~----~~~~~~~~~~ 529 (1091)
...|+.|.+.++..- ..+....... ..+.. +.++++++..+.. ..+.+.++... .....+....
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 234888888776433 4444444443 34444 5677776654333 23666677654 2223333222
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee---eEEEecccccccceEEEEEcCCCCEEEE-EeCCC--eEE
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH--VIK 603 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~dg--~i~ 603 (1091)
..+....-.. +..+...+..+...+.|...++..... ...+..+. ....+..+.. .+++|+. ...++ .|+
T Consensus 277 ~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 277 DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVSL--FKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence 2332222222 444444443444567788888877652 22333333 0113444443 4555555 33443 588
Q ss_pred EEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC----CCeEEEEECCCCCe
Q 001367 604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS 656 (1091)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~~ 656 (1091)
++++..+.....+..... ..|..+...+++..+..... -++++.||+.+++.
T Consensus 353 v~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 899984555555554432 23455555555554443322 36788888887754
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.71 E-value=0.0057 Score=68.42 Aligned_cols=223 Identities=9% Similarity=0.044 Sum_probs=116.0
Q ss_pred CCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 473 (1091)
.....+..+.++|+|++++++ .+|.-.|+.... .+. ...+.-...+|.+.++ +++-...+.|.|+.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~---~r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA---WRN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT---TEE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC---Ccc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEcC
Confidence 345567899999999999995 567677777322 121 1234456789998665 5666668889996423
Q ss_pred CCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
+.+....+... ..+..+.. |.+|...+ ++.|.+||+++.+.+..+... +|..+.|+++|++++..+.+
T Consensus 98 ~~~~~k~i~~~-~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~--- 165 (443)
T PF04053_consen 98 KNEVVKSIKLP-FSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD--- 165 (443)
T ss_dssp EE-TT-----S-S-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S----
T ss_pred ccccceEEcCC-cccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC---
Confidence 33333333221 22333322 44555554 448999999999888887754 38899999999999988742
Q ss_pred ceEEEEEecCCc-----------eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC
Q 001367 554 ESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622 (1091)
Q Consensus 554 ~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 622 (1091)
.+++++.... .....+.... ..|.+.+|..+ .++-.+.. .++- +-.|+........
T Consensus 166 --~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld--- 232 (443)
T PF04053_consen 166 --SIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD--- 232 (443)
T ss_dssp --SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S---
T ss_pred --eEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC---
Confidence 3666554332 0122222112 46788888765 44444444 5655 3334332222222
Q ss_pred CCCceEEEccCCCEEEEEECCCeEEEEECCC
Q 001367 623 PENPRICFNKNGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
..+.-+.+.+..+.+.....++.+..+.+..
T Consensus 233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 1356777788778888888888888887763
No 362
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.0031 Score=70.37 Aligned_cols=119 Identities=11% Similarity=0.070 Sum_probs=87.6
Q ss_pred CceEEEccCCCEEEEEECCCeEEEEECCCCCeeccccccccc-ceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 625 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
+.--+++..+++++.|+.-|.+++|+...+.....-.+-... +....+ +++..+++.|
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~v---------------------s~~e~lvAag 94 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSV---------------------SSVEYLVAAG 94 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEe---------------------cchhHhhhhh
Confidence 444567778999999999999999998877544332222222 222333 6777788888
Q ss_pred ccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCC
Q 001367 704 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 764 (1091)
Q Consensus 704 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~ 764 (1091)
+..|.|-++.++...+.....+.-....|...|+++.|++++..+++|...|.|.+-.++.
T Consensus 95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 8888888888776555554444444455889999999999999999999999998877654
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.62 E-value=0.0035 Score=73.06 Aligned_cols=184 Identities=9% Similarity=0.071 Sum_probs=104.1
Q ss_pred CCeeEEEecCCCCEEEEEe-------CC--eEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC--------
Q 001367 802 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------- 864 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-------- 864 (1091)
..+...++||||+.+|... +. .+.+++.. +.. +.+.. ....+.-.|+| +|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999999988764 33 45555542 222 33322 22478899999 77766665422
Q ss_pred ----CeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEE---EEcCCCceeeeeeeeccCCCcCCCCC
Q 001367 865 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS 937 (1091)
Q Consensus 865 ----g~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1091)
+.+.+.++..++... ...+.|..+.|||||+.+|... ++.|.+ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 234444554443322 2346799999999999988766 577777 444444422111111212111 13
Q ss_pred ceEEEEcCCCCEEEEEecCeEEEEEcCC-cceeeeeecC--CccCEEEEEEeeCCCEEEEEEcCC
Q 001367 938 ETHIQFHKDQTRFLLVHETHLAIYEAEE-LTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDG 999 (1091)
Q Consensus 938 i~~l~fs~dg~~la~~~d~~i~vwd~~~-~~~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~dg 999 (1091)
+.++.|..++.+++...++...+|.+.- |..... ..+ ...++.+|+-+++ .++....+|
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 5789999999976554444344454331 222111 122 2566777777763 344455666
No 364
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.60 E-value=0.024 Score=57.87 Aligned_cols=201 Identities=11% Similarity=0.079 Sum_probs=110.6
Q ss_pred CCCCeeEEEecCCCCEEEEEeC--CeEEEEEccCceeEEEecCC-CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc
Q 001367 800 SQEAVPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 876 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~d--g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~ 876 (1091)
-...+..+++.|+...|++..| +.|..++. +|+.++.+.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence 4556999999998776666653 77877776 57888776543 35788899987 77777766668999999984321
Q ss_pred ------eeeee-----ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC---CceeeeeeeeccCCCcCCCCCceEEE
Q 001367 877 ------VISKL-----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQ 942 (1091)
Q Consensus 877 ------~~~~l-----~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~ 942 (1091)
....+ ..++..+-.++|.|.++.|+.+-+..-..++.+.. .....................+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 11111 12455689999999888888787776677777654 11111111111110111112478999
Q ss_pred EcCCCCEEEE-E-ecCeEEEEEcCCcceeeeee--cCC------ccCEEEEEEeeCCCEEEEEEcCCcEEEE
Q 001367 943 FHKDQTRFLL-V-HETHLAIYEAEELTCLKQWF--PIS------SVPISQATFSCDCRMVFTSFVDGTLSIH 1004 (1091)
Q Consensus 943 fs~dg~~la~-~-~d~~i~vwd~~~~~~~~~~~--~~h------~~~v~~v~fs~dg~~l~t~~~dg~v~iw 1004 (1091)
|.|....|.+ + .+..|..+| .+|+.+..+. .+. -...-.|+|.++|++.++ ++-...+++
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 9998665555 4 446788888 5566554322 211 135678999999976664 466555544
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.2 Score=56.02 Aligned_cols=251 Identities=13% Similarity=0.119 Sum_probs=160.3
Q ss_pred cEEEEEECCCCCEEEEEECC-CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 398 SVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
....++..|++..+...... ..+..-+... ..... ....-...-..++.++++.+ ..++...++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccccc-ceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 55667888888655554322 2344444431 11111 11111123456788888886 45555567899999988777
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEec---CCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
.......-. ....+++++ ++..+..+.. ++++.+.|-.+............+ ..++++|+|+.++... ..
T Consensus 108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~---~~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN---SD 180 (381)
T ss_pred eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe---cC
Confidence 776653222 445566644 4545544443 688888888877777664443344 8899999999888775 23
Q ss_pred ceEEEEEecCCceeeEEEecc--cccccceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeEEEEeCCCCCCCCceE
Q 001367 554 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI 628 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 628 (1091)
++.|.+.|..+....+ -... .........+.++|+++.+++.... +.+...|..++............ ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 7789999977666553 1100 1112345678899999988775433 69999999998877763222222 34678
Q ss_pred EEccCCCEEEEEECC-CeEEEEECCCCCeecccc
Q 001367 629 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG 661 (1091)
Q Consensus 629 ~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~ 661 (1091)
..+|+|+.+.+.... +.+.+.|..+........
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 999999999888554 889999888776655443
No 366
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.52 E-value=4.2e-05 Score=83.33 Aligned_cols=204 Identities=12% Similarity=0.166 Sum_probs=128.5
Q ss_pred CCCcEEEEEcCCCc-eEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CCCEE
Q 001367 334 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 411 (1091)
Q Consensus 334 ~~~V~~v~fspdg~-~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 411 (1091)
...+.|++++-+.+ -++++|..+|.|.+-.+....-- ...+..+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 34788888765443 58899999999999887543221 0112556888999999999 77888
Q ss_pred EEEE----CCCEEEEEEeeCCcc-cceeEEEec-cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc-eeEEecCC
Q 001367 412 GVAY----SKHIVQLYAYHGGSD-ARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGH 484 (1091)
Q Consensus 412 as~~----~d~~i~iwd~~~~~~-~~~~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~ 484 (1091)
|+|- .|..+.|||+.++-. .+....+.+ -.....+++|-.+.+ ++.+|.....+.++|++... ....+ .
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--n 194 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--N 194 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--h
Confidence 8873 456799999998621 111111222 334566889988777 78888888899999987321 11111 2
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEe-cCCCCcee-eecCC----CCcEEEEEEcCCCC-EEEEEecCCCCceEE
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARV-DYDAP----GLGCTRMAYSANGR-RLFSCGTSKEGESFL 557 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~-~~~~~----~~~i~~~~~s~d~~-~l~~~~~~~~~~~~i 557 (1091)
+..+..+.+.|- .+.++++-. ||.|.+|| ...-+... .+... ...+..++|.|-.. .++++.. ..++|
T Consensus 195 Tk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tI 269 (783)
T KOG1008|consen 195 TKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITI 269 (783)
T ss_pred hhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceE
Confidence 233444555442 223565555 99999999 33333222 11111 22488899999554 3444443 26679
Q ss_pred EEEecC
Q 001367 558 VEWNES 563 (1091)
Q Consensus 558 ~iwd~~ 563 (1091)
+++|+.
T Consensus 270 rlydi~ 275 (783)
T KOG1008|consen 270 RLYDIC 275 (783)
T ss_pred EEeccc
Confidence 999875
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.50 E-value=0.071 Score=56.89 Aligned_cols=231 Identities=11% Similarity=0.125 Sum_probs=130.4
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe----
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---- 481 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---- 481 (1091)
..++.|+.|..+| +.++++........ + .+..+|..+...++-+ .++.-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3678999999999 99999933322221 1 2333499999999877 444444 599999998754433211
Q ss_pred ----------cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC-----CceeeecCCCCcEEEEEEcCCCCEEEE
Q 001367 482 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS 546 (1091)
Q Consensus 482 ----------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~s~d~~~l~~ 546 (1091)
......+...+......+...+.......|.+|.+... ....++... ..+.+++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 11222344443112233344555555668888887663 222333333 567788887 556666
Q ss_pred EecCCCCceEEEEEecCCceeeEEEecccc---------cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEE--E
Q 001367 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T 615 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~ 615 (1091)
+.. ....+.|+.++.....+..... ...++..+.. +++.+|++- +..-.+.|. .|+..+ .
T Consensus 154 ~~~-----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTS-----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeC-----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 653 2378889887766544432210 0123333333 345555543 222333343 444333 3
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccccc
Q 001367 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
+.... ....+++. ..+++.... +.|.||++.+++.++.+..
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 33222 23455553 457776665 5699999999988877664
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.49 E-value=0.085 Score=59.25 Aligned_cols=187 Identities=12% Similarity=0.124 Sum_probs=102.5
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEEccCce------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc
Q 001367 802 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~ 875 (1091)
+.+.++.|+.+.++++...+|.+++||+.... .+.........+....+.. +| ++.-..++.+.+.+-...
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~-~G--ivvLt~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYK-NG--IVVLTGNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCC-CC--EEEECCCCeEEEEeCccc
Confidence 78999999999999999999999999986333 1111111112222333433 45 333344555554432221
Q ss_pred c-eeee---ecc-----ccC-CeEE-EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEc
Q 001367 876 E-VISK---LEG-----HSK-RVTG-LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 944 (1091)
Q Consensus 876 ~-~~~~---l~~-----h~~-~V~~-l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs 944 (1091)
. .... +.+ |.- .... ..++.+....+....++.+.+-+-.... .... .+++..+++|
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~--------~i~~----~~~i~~iavS 225 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK--------QIDS----DGPIIKIAVS 225 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc--------cccC----CCCeEEEEEC
Confidence 1 1111 111 100 0111 2344455555555555555533322210 0111 1368999999
Q ss_pred CCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 945 KDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 945 ~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
|+|+++|. ..+|.+.+....-.+....+..+-......+.|.-++..++.- ...|.+..
T Consensus 226 png~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 226 PNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 99999998 6778999988766666665544434566778887765544433 33455544
No 369
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.035 Score=55.26 Aligned_cols=231 Identities=16% Similarity=0.082 Sum_probs=134.0
Q ss_pred EEEecCCCCE-EEEEe-CCe-EEEEEccCceeEEEecCCCCC--eEEEEEcCCCCcEEEEEeCC-----CeEEEEeccCc
Q 001367 806 CFALSKNDAY-LFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARSS 875 (1091)
Q Consensus 806 ~l~~s~dg~~-la~~~-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~la~g~~d-----g~i~iwd~~~~ 875 (1091)
.++++|--.. ++.+- -|+ ..++|..+.+...++....+. --.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 5677775443 34444 244 788999888777665433321 22346999 89888865433 68999999865
Q ss_pred -ceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEE--------------------EEcCCCceeeeeeeeccCCCcCC
Q 001367 876 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV--------------------WDVDGWGIQTCRSLQTPDGVMTL 934 (1091)
Q Consensus 876 -~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~v--------------------wd~~~~~~~~~~~~~~~~~~~~~ 934 (1091)
+.+..+..|.-.-..+.+.+||+.|+.+. |-|.. .|-.++.......+.....+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~--- 225 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ--- 225 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh---
Confidence 45678888887788899999999998764 32333 33223222211111111111
Q ss_pred CCCceEEEEcCCCCEEEEE-ecC-----eEEEEEcCCcceeeeeecC------CccCEEEEEEeeCCCEEEEEE-cCCcE
Q 001367 935 APSETHIQFHKDQTRFLLV-HET-----HLAIYEAEELTCLKQWFPI------SSVPISQATFSCDCRMVFTSF-VDGTL 1001 (1091)
Q Consensus 935 ~~~i~~l~fs~dg~~la~~-~d~-----~i~vwd~~~~~~~~~~~~~------h~~~v~~v~fs~dg~~l~t~~-~dg~v 1001 (1091)
..+..++..+||+.++.+ ..| --.|=-...++.+.-+-.. -...|-+|+...+..+++..+ .-+..
T Consensus 226 -lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 -LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred -cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 247888888888877763 111 1111111222222211111 145677788776655555444 45568
Q ss_pred EEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEe
Q 001367 1002 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1058 (1091)
Q Consensus 1002 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~ 1058 (1091)
.+||..+|..+... .++.. ..| +- ...-+++.+.+|.+.+++
T Consensus 305 vi~da~tG~vv~~a----~l~da---aGv-----a~---~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 305 VIWDAATGAVVSEA----ALPDA---AGV-----AA---AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEcCCCcEEecc----ccccc---ccc-----ee---ccCceEEecCCceEEecc
Confidence 89999999987332 22222 111 11 134577777889988874
No 370
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.46 E-value=0.4 Score=55.86 Aligned_cols=197 Identities=11% Similarity=0.087 Sum_probs=119.6
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCC-cceEE----------EeecccCCceEEEEEecCCeEEEEecCCCCceeee
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYS----------LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~----------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1091)
.++.++.++.|.-.|..+|+.+.++.... ..+.. +++ .+..++.++.|+.+.-.|..+++.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 46667778889999999999988765321 11111 111 1236777888999999999998887765
Q ss_pred cCCCCc-EEEEEEcC---CCCEEEEEecCC--CCceEEEEEecCCceeeEEEeccccc----------------------
Q 001367 526 DAPGLG-CTRMAYSA---NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ---------------------- 577 (1091)
Q Consensus 526 ~~~~~~-i~~~~~s~---d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~---------------------- 577 (1091)
...... -..+.-+| ++ .++++.... ..++.|.-+|..+|+.+-.+......
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 432111 00111112 34 444443211 12577999999999887665432210
Q ss_pred ------ccce-EEEEEcCCCCEEEEEeCC-----C-----------eEEEEECCCCeeEEEEeCCCCC-------CCCce
Q 001367 578 ------HNSV-SVVHFDTAKDQILAAGDD-----H-----------VIKIWDMNKVQLLTTIDAGGGL-------PENPR 627 (1091)
Q Consensus 578 ------~~~v-~~v~~~~~~~~l~~~s~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~-------~~v~~ 627 (1091)
...+ ..+++.|+...++.+..+ + .|.-.|+++|+..-.++...+. ....-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 0111 134667777777775522 2 5677789999988777653221 11112
Q ss_pred EEEccCCC---EEEEEECCCeEEEEECCCCCeec
Q 001367 628 ICFNKNGT---LLAVIANENRIKILETPESNSVD 658 (1091)
Q Consensus 628 v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~ 658 (1091)
+.+..+|+ .++.+..+|.+++.|..+++.+.
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 22334665 78899999999999999997764
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.048 Score=57.86 Aligned_cols=222 Identities=15% Similarity=0.082 Sum_probs=135.5
Q ss_pred EEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCE
Q 001367 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1091)
Q Consensus 340 v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1091)
-.|.|++..|+.+--..+.|.-|+..+|+... +. +.+.+.++..-.++..|+++. .+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~g- 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-HG- 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-cc-
Confidence 35778888788888888999999998775442 11 233445555555555666553 33
Q ss_pred EEEEEeeCCcccceeEEEe-cc-ccCeeEEEEcCCCCceEEEEeeCC------------CcEEEEeCCCCceeEEecCCC
Q 001367 420 VQLYAYHGGSDARQQLEID-AH-VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 420 i~iwd~~~~~~~~~~~~~~-~h-~~~v~~~~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
+.+++.+++.......... +. ....+.+...|+|. +.+ +... |.|+..|. .+..++.+..+-
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~ 162 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL 162 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE
Confidence 6777776655422221211 11 23567888999998 333 3222 33444443 566666666666
Q ss_pred cceEEEeecccCCceEE-EEEecCCeEEEEecCC-----CCc--eeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 486 APVYSLCPHAKENIHFI-FSISVDGKIKAWLYDS-----LGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~-----~~~--~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
..-+.++|+| |++.+ ++-+..+.|.-|+++. ... ........+..-.++...+|.+.+++... .+.|
T Consensus 163 ~~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v 237 (307)
T COG3386 163 TIPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRV 237 (307)
T ss_pred EecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceE
Confidence 6678899965 55444 4445558888887763 111 12233334556677888888877644321 2369
Q ss_pred EEEecCCceeeEEEecccccccceEEEEEc-CCCCEEEEEe
Q 001367 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG 597 (1091)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~s 597 (1091)
..|+.. |+++..+.... ..+.+++|. |+.+.|++.+
T Consensus 238 ~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEe
Confidence 999988 88888888765 567777774 5556666544
No 372
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0011 Score=69.06 Aligned_cols=100 Identities=15% Similarity=0.277 Sum_probs=84.2
Q ss_pred HHHHHHHHhhhhcChhHHHHHHHHhcCCCh----------hHHHHHHHhcCcCHHHHHHHhccC-CCcCCccccchhhhh
Q 001367 7 DLVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFE 75 (1091)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~l~~Es~~~~----------~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~ 75 (1091)
.|..+|..++...|..+.+..|-+|+|... ++.++.++|..|+-.-|++.+..- ..+.+. ...+.|.
T Consensus 118 ~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~~ 195 (394)
T KOG2817|consen 118 VLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHHH
Confidence 358899999999999999999999999864 278899999999999999998653 222222 2238899
Q ss_pred hhhhhhhhhhcCCCHH--HHHHHHHhhccccCCCC
Q 001367 76 IRKQNFFEALDGHDIA--KALNILKKDLKDFAPGN 108 (1091)
Q Consensus 76 i~~q~~lEll~~~~~~--~a~~~l~~~l~~~~~~~ 108 (1091)
+.+++|++++..|... +|+...|++++|+....
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~ 230 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH 230 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch
Confidence 9999999999999988 99999999999996554
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.30 E-value=0.15 Score=54.44 Aligned_cols=229 Identities=15% Similarity=0.065 Sum_probs=127.7
Q ss_pred CCceEEEEEcCCCcEEEEEcCC-CCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEE
Q 001367 345 VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 423 (1091)
Q Consensus 345 dg~~llasg~~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iw 423 (1091)
.++ .|+.|+.+| +.+++... ...... .+...|..+...|+-+.|++-+ |+.++++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i---------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRI---------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVY 61 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccceeE---------------------eecceEEEEEEecccCEEEEEc-CCccEEE
Confidence 344 457888888 89999832 222211 1334599999999888887775 4899999
Q ss_pred EeeCCcccceeE-----------EEeccccCeeEEE--EcCCCCceEEEEeeCCCcEEEEeCCCC-----ceeEEecCCC
Q 001367 424 AYHGGSDARQQL-----------EIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHG 485 (1091)
Q Consensus 424 d~~~~~~~~~~~-----------~~~~h~~~v~~~~--~s~d~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~ 485 (1091)
++..-....... ........+...+ -...+.. .++.+- ...|.+|.+... +..+++. -.
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp 138 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LP 138 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEEE-CCEEEEEEEECCcccccceeEEEE-cC
Confidence 987644322100 0011223344444 1123332 444443 458888877653 3445554 34
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCC-----------cEEEEEEcCCCCEEEEEecCCCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-----------GCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
..+.+++|. +..++.|..+ ...+.|++++........... ....+.--+++.+|++..
T Consensus 139 ~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~------ 207 (275)
T PF00780_consen 139 DPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD------ 207 (275)
T ss_pred CCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec------
Confidence 677888885 2356666644 467788886555443322111 112222334456665432
Q ss_pred eEEEEEecCCceeeE--EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001367 555 SFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1091)
..-...| ..|+..+ .+.- . ..+..+++. ..++++.+. +.|.||++.++++++.+...
T Consensus 208 ~~g~fv~-~~G~~~r~~~i~W-~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 NIGVFVN-KNGEPSRKSTIQW-S---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEc-CCCCcCcccEEEc-C---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 1222233 3444333 2221 1 344555553 367777666 45999999999999998754
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.20 E-value=0.099 Score=55.55 Aligned_cols=215 Identities=11% Similarity=0.044 Sum_probs=125.3
Q ss_pred EEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec
Q 001367 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1091)
Q Consensus 447 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1091)
..|.++... ++.+--..+.|.-||..+++.. .+. +...+.++... +.. ..|+++.. -+.+++.++......+.
T Consensus 30 P~w~~~~~~-L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~-d~~-g~Lv~~~~--g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 30 PVWDPDRGA-LLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALI-DAG-GRLIACEH--GVRLLDPDTGGKITLLA 102 (307)
T ss_pred ccCcCCCCE-EEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceee-cCC-CeEEEEcc--ccEEEeccCCceeEEec
Confidence 356677664 4455556778888987766432 232 22222333221 222 34444432 23445555444422221
Q ss_pred C-----CCCcEEEEEEcCCCCEEEEEec-----CC--CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEE
Q 001367 527 A-----PGLGCTRMAYSANGRRLFSCGT-----SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1091)
Q Consensus 527 ~-----~~~~i~~~~~s~d~~~l~~~~~-----~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~ 594 (1091)
. .....+.....|+|.+.+.... .. ...+.++.+|. .+..++.+..+- ..-+.++||||++.++
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~---~~~NGla~SpDg~tly 178 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL---TIPNGLAFSPDGKTLY 178 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE---EecCceEECCCCCEEE
Confidence 1 1124567788899988776544 11 12345666665 455666665533 4567899999998888
Q ss_pred EEeC-CCeEEEEECCC--Cee---EEEEeCCCCCCCCceEEEccCCCEEEEEECCC-eEEEEECCCCCeecccccccccc
Q 001367 595 AAGD-DHVIKIWDMNK--VQL---LTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNL 667 (1091)
Q Consensus 595 ~~s~-dg~i~iwd~~~--~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v 667 (1091)
.+.. .+.|.-|++.. +.. .............-.++...+|.+.+++..+| .|.+|+.. ++.+..+..+...+
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~ 257 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRP 257 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCC
Confidence 8654 47788887752 211 11111111122345678888888876555554 89999988 88888888777778
Q ss_pred eeeeec
Q 001367 668 RKLSVN 673 (1091)
Q Consensus 668 ~~~~~~ 673 (1091)
++++|.
T Consensus 258 t~~~Fg 263 (307)
T COG3386 258 TNPAFG 263 (307)
T ss_pred ccceEe
Confidence 888875
No 375
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.18 E-value=0.18 Score=52.49 Aligned_cols=206 Identities=17% Similarity=0.138 Sum_probs=114.3
Q ss_pred CeEEEEEcCCCCcEEEEEe---CCCeEEEEeccCcceeee-eccccCCeEEEEECCCCCEEEEEeCCCcEEEEE-cCCCc
Q 001367 844 TATSLAFNPHDNNVIAIGM---DDSTILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG 918 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~---~dg~i~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd-~~~~~ 918 (1091)
.+.+.++++ +++.+|... ....++++.. +..... +.+ ..++...|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 666665544 2335555543 333222 233 3688899999988877766677677774 23322
Q ss_pred eeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe----cCeEEEEEcC---Cc--cee---eeeecCCccCEEEEEEe
Q 001367 919 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFS 986 (1091)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~----d~~i~vwd~~---~~--~~~---~~~~~~h~~~v~~v~fs 986 (1091)
.. ...+...... ..|..+.+||||..+|... ++.|.+--+. .+ ..+ ..........++.+.|.
T Consensus 100 ~~-~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GE-PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred ce-eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 11 1112221111 1599999999999999843 5677776543 22 111 11111225688999999
Q ss_pred eCCCEEEEEEcCCc-EEE-EeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCC
Q 001367 987 CDCRMVFTSFVDGT-LSI-HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1064 (1091)
Q Consensus 987 ~dg~~l~t~~~dg~-v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~ 1064 (1091)
+++.+++.+...+. +.. .....+... .++.. ...+..+.+.-+| .. +.+.+++.+.- ...+.
T Consensus 175 ~~~~L~V~~~~~~~~~~~~v~~dG~~~~-------~l~~~--~~~~~v~a~~~~~---~~-~~~t~~~~~~~---~~~~~ 238 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVRLVSVDGGPST-------PLPSV--NLGVPVVAVAASP---ST-VYVTDDGGVLQ---SRSGA 238 (253)
T ss_pred CCCEEEEEeCCCCCceeEEEEccCCccc-------ccCCC--CCCcceEEeeCCC---cE-EEEECCCcEEE---CCCCC
Confidence 99998776655443 333 333222211 11111 2223334444443 23 44555555443 56677
Q ss_pred CcccCCCCccc
Q 001367 1065 TWAVLPPDEIV 1075 (1091)
Q Consensus 1065 ~~~~~~~~~~~ 1075 (1091)
.|...+.....
T Consensus 239 ~W~~v~~~~~~ 249 (253)
T PF10647_consen 239 SWREVPGGVGD 249 (253)
T ss_pred cceEccCCCCC
Confidence 78887765543
No 376
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.17 E-value=0.00012 Score=79.88 Aligned_cols=182 Identities=14% Similarity=0.138 Sum_probs=117.0
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCce--eeecCCCCcEEEEEEcC-CCCEEEEEecCCCCceEEEEEecC
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
.+.+++.....+...++.|..+|.|-+-.++..... .....+...+++++|++ |.+.|+++......+..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 344555444444567888888999988877654332 23444556789999988 667788776544567779999998
Q ss_pred Cc--eeeE--EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeEEEEeCCCCCCCCceEEEcc-CCCEE
Q 001367 564 EG--AIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLL 637 (1091)
Q Consensus 564 ~~--~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l 637 (1091)
++ .+.. .|.+. ......+++|-.+.+.+++|.....+.++|++.. .....+. ...+..+..+| .+.++
T Consensus 138 s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence 87 2222 22221 1245668889888889999999999999998732 1111111 12356778888 67777
Q ss_pred EEEECCCeEEEEECCCC--Ceeccccccc----ccceeeeeccc
Q 001367 638 AVIANENRIKILETPES--NSVDAAGVLS----DNLRKLSVNPI 675 (1091)
Q Consensus 638 ~~~~~dg~i~iwd~~~~--~~~~~~~~~~----~~v~~~~~~~~ 675 (1091)
++-. ||.|.+||.... ..+..+.... ..+..++++|.
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT 254 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence 7665 899999994322 2222222222 24778888775
No 377
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.15 E-value=0.025 Score=66.89 Aligned_cols=147 Identities=12% Similarity=0.127 Sum_probs=100.6
Q ss_pred CCcEEEEE-eCCCeEEEEeccCcceeeeeccccCC-eEEEEECCCC-------CEEEEEeCCCcEEEEEcCCCceeeeee
Q 001367 854 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDAL-------NILVSSGGDAQIFVWDVDGWGIQTCRS 924 (1091)
Q Consensus 854 ~~~~la~g-~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg-------~~las~s~Dg~i~vwd~~~~~~~~~~~ 924 (1091)
+.++|+.. .....|+-.|+..|+.+..+..|... |..+ .|+. ..-..|-.+..+..||..-.. ..+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 44454443 34578999999999999999887754 5544 4432 223446677789999987532 112
Q ss_pred eeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEE
Q 001367 925 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 1004 (1091)
Q Consensus 925 ~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iw 1004 (1091)
+.............+|++-+.+|...+.+.+|.|++||- .|..-...+++-..+|..|..+.||++|++.+ +..+.++
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 211110111113477888888888777789999999994 45555666667789999999999999988654 5678888
Q ss_pred eCC
Q 001367 1005 EAS 1007 (1091)
Q Consensus 1005 d~~ 1007 (1091)
++.
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 863
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.09 E-value=0.039 Score=60.35 Aligned_cols=214 Identities=11% Similarity=0.122 Sum_probs=115.1
Q ss_pred ccccCCCCCceeeecCCCCCCCCCeeEEEecCC----CCEEEEEe----------C-CeEEEEEccCc----eeEEEe--
Q 001367 780 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN----DAYLFSAS----------G-GVISLYIVMTF----KTILTI-- 838 (1091)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d----g~~la~~~----------d-g~i~iwd~~~~----~~~~~~-- 838 (1091)
++.|+.+.+.+....+....+-..+..+.+..+ ..++++|. . |.|.++++... ..+..+
T Consensus 5 ~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~ 84 (321)
T PF03178_consen 5 RLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS 84 (321)
T ss_dssp EEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE
T ss_pred EEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE
Confidence 444555555555555543222222233334432 46777764 1 78999999884 122211
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc-eeeeecc-ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001367 839 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 839 ~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~-~~~~l~~-h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~ 916 (1091)
....++|++++-- +++ |+++. .+.|.+|++...+ ....-.- ....++++... +++++.|...+.+.++..+.
T Consensus 85 ~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 85 TEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET
T ss_pred EeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc
Confidence 1246778888766 344 44343 4789999998877 3322211 22245555544 66999999888888886654
Q ss_pred CceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCC-------cc-eeeeeecCC-ccCEEEE---
Q 001367 917 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA--- 983 (1091)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~-------~~-~~~~~~~~h-~~~v~~v--- 983 (1091)
..... ..+..-.. . ..++++.|-+|++.+++ -.+|.+.++.... +. .+.....-| ...|+++
T Consensus 159 ~~~~l-~~va~d~~-~---~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 159 ENNKL-ILVARDYQ-P---RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp TTE-E-EEEEEESS-----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred cCCEE-EEEEecCC-C---ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 22111 11211111 1 25888999867665555 4678899887762 12 222111122 5667777
Q ss_pred EEee--CCC------EEEEEEcCCcEEEE
Q 001367 984 TFSC--DCR------MVFTSFVDGTLSIH 1004 (1091)
Q Consensus 984 ~fs~--dg~------~l~t~~~dg~v~iw 1004 (1091)
.+.| .+. .++.++.+|.|.+.
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEE
Confidence 5455 222 47778899998843
No 379
>PRK10115 protease 2; Provisional
Probab=97.03 E-value=0.73 Score=55.72 Aligned_cols=244 Identities=8% Similarity=0.014 Sum_probs=122.4
Q ss_pred ccEEEEEECCCCCEEEEEECC-----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC-----Cc
Q 001367 397 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT 466 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~ 466 (1091)
-.+..+.|||||++||.+... ..|++-|+.+|..+.. .+.+ . -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 456778999999999987432 3688999988863321 1222 1 146999999985 33333222 46
Q ss_pred EEEEeCCCC--ceeEEecCCCcceEEEeecccCCceEEEEEecC---CeEEEEecCC--CCceeeecCCCCcEEEEEEcC
Q 001367 467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA 539 (1091)
Q Consensus 467 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~--~~~~~~~~~~~~~i~~~~~s~ 539 (1091)
|..+++.++ +....+........ +....+.++.+++..+.. +.+.+++.+. ................+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 888888888 33333443333333 222224355555444333 4588888532 222222222222222222 2
Q ss_pred CCCEEEEEecCCCCceEEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEE--ECCCCeeEEEE
Q 001367 540 NGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW--DMNKVQLLTTI 616 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iw--d~~~~~~~~~~ 616 (1091)
.+..+...+..+.....|...++.. ++. ..+..+. ....+..+.+. .+..+++...+|.-+++ +..++ .+..+
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l 353 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGI 353 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEe
Confidence 2344444443333345566666652 222 2333331 12367777776 33445556667765554 44333 33433
Q ss_pred eCCCCCCCCceEEEc--cCCC-EEEEEEC---CCeEEEEECCCC
Q 001367 617 DAGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES 654 (1091)
Q Consensus 617 ~~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iwd~~~~ 654 (1091)
..... ..+..+.++ +++. ++++.+. -+.++.+|..++
T Consensus 354 ~~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 354 AFDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred cCCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 32111 112222334 3444 3333332 367888887765
No 380
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.00 E-value=0.21 Score=54.56 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=102.4
Q ss_pred CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE---EEEECCC----CCEEEEEEC---------C-CE
Q 001367 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN---RVVWSPD----GSLLGVAYS---------K-HI 419 (1091)
Q Consensus 357 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---~l~~spd----g~~las~~~---------d-~~ 419 (1091)
..|+|.|..+.+.+....+. ....+. .+.|..+ ..+|++|.. . |.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~------------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr 63 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE------------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR 63 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE------------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred cEEEEEeCCCCeEEEEEECC------------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence 45888888888877654432 223333 4445443 578888743 2 88
Q ss_pred EEEEEeeCC----cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc-eeEEec-CCCcceEEEee
Q 001367 420 VQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFE-GHGAPVYSLCP 493 (1091)
Q Consensus 420 i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~~v~~~~~ 493 (1091)
|.++++... ..++.... ....++|++++-- ++. ++.+. .+.|.+|++...+ ....-. .....+.++..
T Consensus 64 i~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~---lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 64 ILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR---LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE---EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred EEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE---EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 999999984 22332222 2457789998776 343 33333 4789999998877 333221 12235555554
Q ss_pred cccCCceEEEEEecCCeEEEEecCCCCc-eee--ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 494 HAKENIHFIFSISVDGKIKAWLYDSLGA-RVD--YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~--~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
. +.+++.|...+.+.++.++.... ... -......++++.|-++++.++++-. .+.+.++...
T Consensus 138 --~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~ 202 (321)
T PF03178_consen 138 --F--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYN 202 (321)
T ss_dssp --E--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-
T ss_pred --c--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEEC
Confidence 2 24889999888888886655332 222 2223456888888877766655533 5557666544
No 381
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.99 E-value=1.4 Score=53.20 Aligned_cols=205 Identities=13% Similarity=0.148 Sum_probs=120.1
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcc--------eEEEeeccc--------------CCceEEEEEecCCeEEEE
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHAK--------------ENIHFIFSISVDGKIKAW 514 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~~--------------~~~~~l~s~~~dg~i~iw 514 (1091)
.++.++.++.|.-.|..+|+.+.++...... ...+++... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666777888888898889888776532211 112222211 133478888899999999
Q ss_pred ecCCCCceeeecCCCC------------cEEEEEEcC--CCCEEEEEecCCC------CceEEEEEecCCceeeEEEecc
Q 001367 515 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL 574 (1091)
Q Consensus 515 d~~~~~~~~~~~~~~~------------~i~~~~~s~--d~~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~ 574 (1091)
|.++++....+..... ....+.-+| .+..+++++...+ .++.|+-+|..+|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9988887765432110 000111122 2334555543222 2678999999999988776531
Q ss_pred ccc--------------ccce-EEEEEcCCCCEEEEEe------------------CCCeEEEEECCCCeeEEEEeCCCC
Q 001367 575 QLQ--------------HNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG 621 (1091)
Q Consensus 575 ~~~--------------~~~v-~~v~~~~~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1091)
... ...+ ...++.++...++.+. ..+.|.-.|.++|+..-.++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 100 0011 2345555555555422 124566778888988877654221
Q ss_pred -------CCCCceEEEcc-CCC---EEEEEECCCeEEEEECCCCCeecccc
Q 001367 622 -------LPENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 622 -------~~~v~~v~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
.....-+.+.. +|+ .++.++.+|.++++|..+++.+....
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 00111122322 553 78999999999999999998776544
No 382
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0031 Score=69.48 Aligned_cols=93 Identities=20% Similarity=0.423 Sum_probs=71.8
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE-EEEECCCCCEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGVA 414 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~las~ 414 (1091)
.|..+.|+|.-. |+|.+..+|.|.+..+. -+. +|. +.-|+..++ +++|.|||+.||+|
T Consensus 22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qR-------lwt------------ip~p~~~v~~sL~W~~DGkllaVg 80 (665)
T KOG4640|consen 22 NIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQR-------LWT------------IPIPGENVTASLCWRPDGKLLAVG 80 (665)
T ss_pred ceEEEEEcCccc-hhheeccCCcEEEEEec-cce-------eEe------------ccCCCCccceeeeecCCCCEEEEE
Confidence 788999999988 88999999999998877 333 333 333566666 99999999999999
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 451 (1091)
-.||+|++-|+++|..+... ...-...|.++-|++
T Consensus 81 ~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 81 FKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred ecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 99999999999998755421 122344677777764
No 383
>PRK10115 protease 2; Provisional
Probab=96.95 E-value=1.5 Score=53.11 Aligned_cols=244 Identities=9% Similarity=0.018 Sum_probs=122.0
Q ss_pred CcEEEEEcCCCceEEEEEcCCC----cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.+..+.+||||++|+.+.+.+| .|++-|+.+|+.+.. . +.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~-----------------i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-L-----------------LDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-c-----------------ccC---cceEEEEeeCCCEE
Confidence 5777899999996655544444 488999988864422 0 111 11459999999888
Q ss_pred EEEECC------CEEEEEEeeCCcccceeEEEeccccCee-EEEEcCCCCceEEEEee-CCCcEEEEeCC--CCceeEEe
Q 001367 412 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF 481 (1091)
Q Consensus 412 as~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~~~l~s~~-~d~~i~iwd~~--~~~~~~~~ 481 (1091)
+....+ ..|+.+++.++..-... .+.+...... .+..+.|++.+++-+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776542 36778888877321111 2332222233 33445588853322222 34578888843 34322222
Q ss_pred cCCCcceEEEeecccCCceEEEEEec---CCeEEEEecCCCCc-eeeecCC-CCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGA-RVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~-~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
.........+. + ..+ .+.+.... ...|...++..... ...+... ...+..+.+. ++.|+..... .+...
T Consensus 266 ~~~~~~~~~~~-~-~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-H-YQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS 339 (686)
T ss_pred ECCCCCEEEEE-e-CCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence 21122222222 1 112 23332222 12344444442222 2233332 2367777776 4455544432 34666
Q ss_pred EEEEecCCceeeEEEe-cccccccceEEEEEc--CCCC-EEEEEe---CCCeEEEEECCCCe
Q 001367 557 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ 611 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~-~~~~~~~~v~~v~~~--~~~~-~l~~~s---~dg~i~iwd~~~~~ 611 (1091)
+++++..++. +..+. ... ..+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 7888865443 33332 111 123333344 4444 333332 45778888988765
No 384
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.91 E-value=0.0021 Score=43.87 Aligned_cols=39 Identities=36% Similarity=0.622 Sum_probs=34.2
Q ss_pred cceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 001367 875 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 875 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd 913 (1091)
++....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345566778899999999999999999999999999996
No 385
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.88 E-value=0.76 Score=50.77 Aligned_cols=84 Identities=12% Similarity=0.251 Sum_probs=57.9
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCC-----------------CCE
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----------------KDQ 592 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----------------~~~ 592 (1091)
..+.+++.+|++++.++. |.-|.|.++|+.++..++.++|.. ...+.-+..... ..+
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence 357889999998877664 346779999999999999888866 222211111111 112
Q ss_pred E-EEEeCCCeEEEEECCCCeeEEEEeCC
Q 001367 593 I-LAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 593 l-~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1091)
| +-+-.-|.|.||.+.+|..+..+...
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 2 23678899999999999988777653
No 386
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0046 Score=68.15 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeE-EEEECCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 921 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~ 921 (1091)
..+.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577889999 88899999999999999988 777888887777787 99999999999999999999999999976433
Q ss_pred eeeeeccCCCcCCCCCceEEEEc
Q 001367 922 CRSLQTPDGVMTLAPSETHIQFH 944 (1091)
Q Consensus 922 ~~~~~~~~~~~~~~~~i~~l~fs 944 (1091)
... .... ..|.++.|+
T Consensus 99 ~~~----~s~e---~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFL----FSVE---TDISKGIWD 114 (665)
T ss_pred ccc----cccc---cchheeecc
Confidence 221 1111 257777776
No 387
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.85 E-value=0.4 Score=52.93 Aligned_cols=83 Identities=8% Similarity=0.056 Sum_probs=56.7
Q ss_pred CCCCeeEEEecCCCCEEEEEeC-CeEEEEEccCceeEEEecCCCCCeEE-EEEcCCC----------------Cc-EEEE
Q 001367 800 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LAFNPHD----------------NN-VIAI 860 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~~----------------~~-~la~ 860 (1091)
....+.+++.+|++++.|+.++ |.|.++|+.++..++..++-.+.-.. +...... .. +++.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4456889999999998888764 99999999999988887765432211 1111101 11 3345
Q ss_pred EeCCCeEEEEeccCcceeeeec
Q 001367 861 GMDDSTILIYNARSSEVISKLE 882 (1091)
Q Consensus 861 g~~dg~i~iwd~~~~~~~~~l~ 882 (1091)
+-.-|.|.||.+++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6678899999998887665543
No 388
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.81 E-value=0.079 Score=45.47 Aligned_cols=55 Identities=13% Similarity=0.332 Sum_probs=41.9
Q ss_pred CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
+.|++|++|..|++|+-+ +.+..+.... .|..++-... ..++.+..+|+|-+|+-
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~---~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITETD---KVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEeccc---ceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 679999999999999854 5666665443 3667766665 56889999999999973
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.80 E-value=0.92 Score=47.96 Aligned_cols=157 Identities=11% Similarity=0.028 Sum_probs=82.9
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce
Q 001367 840 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 919 (1091)
Q Consensus 840 ~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~ 919 (1091)
.....+..+..++ ||++++++..-....-||--...-...-..-..+|.+|.|+||+.+.+. ...|.|+.=+......
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCcc
Confidence 3456788888998 8999988876656667765432222222334578999999999887664 4888888877222110
Q ss_pred eeeee-eeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecC--CccCEEEEEEeeCCCEEEEEE
Q 001367 920 QTCRS-LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 920 ~~~~~-~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
.-... ....... -.+..++|.+++...|++..|.+. ...+.|+.-..-... -......|.|.++.+-++ .+
T Consensus 220 ~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG 293 (302)
T PF14870_consen 220 TWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LG 293 (302)
T ss_dssp EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-
T ss_pred ccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE-EC
Confidence 00011 1111111 137899999999999998888554 344455443332221 255788999987766555 45
Q ss_pred cCCcEEEE
Q 001367 997 VDGTLSIH 1004 (1091)
Q Consensus 997 ~dg~v~iw 1004 (1091)
.+|.+.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 88877655
No 390
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.78 E-value=1.1 Score=48.79 Aligned_cols=113 Identities=24% Similarity=0.288 Sum_probs=59.6
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC----CCEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLL 411 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~l 411 (1091)
..+.|+|.|||+ ++++ ...|.|.+++ ..+..... +-++ ..+..........++++|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~~----v~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKTP----VADL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECEE----EEE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcce----eccc--------ccccccccCCcccceeccccCCCCEEE
Confidence 578999999997 6555 5589999999 55554110 0000 0123445678899999994 4433
Q ss_pred EEEECC--------CEEEEEEeeCCc-cc---cee-EEEec---cccCeeEEEEcCCCCceEEEEeeCCC
Q 001367 412 GVAYSK--------HIVQLYAYHGGS-DA---RQQ-LEIDA---HVGNVNDLAFSAPCKQISVITCGDDK 465 (1091)
Q Consensus 412 as~~~d--------~~i~iwd~~~~~-~~---~~~-~~~~~---h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1091)
++.+.. ..|.-|....+. .+ +.+ ..+.. ....-..|+|.|||. +.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 333321 245555555441 11 111 11122 223456799999996 455555443
No 391
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.75 E-value=0.42 Score=52.87 Aligned_cols=285 Identities=11% Similarity=0.090 Sum_probs=148.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCe-----eEEEEeCCCCCCCCceEEEc---c--CCCEEEEEECCCeEEEEECCCC--C--
Q 001367 590 KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFN---K--NGTLLAVIANENRIKILETPES--N-- 655 (1091)
Q Consensus 590 ~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s---~--~~~~l~~~~~dg~i~iwd~~~~--~-- 655 (1091)
...+++||..|.++||+..... ++...... .+|..+... + +...||+ -.-..+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 4689999999999999986533 22222222 235555432 2 2334554 45577888877311 1
Q ss_pred -----eecccccccc--cceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecC
Q 001367 656 -----SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 728 (1091)
Q Consensus 656 -----~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 728 (1091)
.+..+..|.- ....+...|.+. ......+..-+.||.+.+++-+.-. ....++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg----------------~~~~~~IcVQS~DG~L~~feqe~~~----f~~~lp 172 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGG----------------VKGRDFICVQSMDGSLSFFEQESFA----FSRFLP 172 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCC----------------CCCceEEEEEecCceEEEEeCCcEE----EEEEcC
Confidence 1112222211 122222322221 2234667778899999999865211 112222
Q ss_pred CccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccce----------eeccCCccccCCCCCceeeecCCCC
Q 001367 729 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA----------TTKVPPRLYQPRHGPQFMVNDTTDS 798 (1091)
Q Consensus 729 ~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1091)
..... ..+++.+....+++++.+..+..|++..-........ ....-..-|...-|+...
T Consensus 173 ~~llP---gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l------- 242 (418)
T PF14727_consen 173 DFLLP---GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL------- 242 (418)
T ss_pred CCCCC---cCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE-------
Confidence 21112 2468888888899999999999988754322111111 111112224444444222
Q ss_pred CCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEE------cCCCCcEEEEEeCCCeEEEEec
Q 001367 799 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF------NPHDNNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~------s~~~~~~la~g~~dg~i~iwd~ 872 (1091)
.+..+.++.....+++-+...+.+.+- +|......+-...+.....| .+..+..+++++.++++.||.=
T Consensus 243 ----~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d 317 (418)
T PF14727_consen 243 ----DIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED 317 (418)
T ss_pred ----EEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC
Confidence 233334444455566666677777764 45444333322222222222 2211235888999999999964
Q ss_pred cCcceeeeeccccCCeEEEEE---CCCCCEEEEEeCCCcEEEEEcCC
Q 001367 873 RSSEVISKLEGHSKRVTGLVF---SDALNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 873 ~~~~~~~~l~~h~~~V~~l~~---spdg~~las~s~Dg~i~vwd~~~ 916 (1091)
. +.+..-.....+| ++.. ..-...|++-+.+|.+.+-=+.+
T Consensus 318 ~--~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 318 T--TLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred C--eEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 3 3333322222333 3333 33356788899999998887776
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.71 E-value=0.17 Score=52.63 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=91.3
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEe-ccCccee
Q 001367 802 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI 878 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd-~~~~~~~ 878 (1091)
..+.+.++|+||+.+|... ++.-.+|-...+....... ....++...|++ ++.+.++...+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999888766 5544444444444333332 333788889999 677777777666667663 3333322
Q ss_pred -eeec--cccCCeEEEEECCCCCEEEEEe---CCCcEEEEEcCCCcee----eeeeeeccCCCcCCCCCceEEEEcCCCC
Q 001367 879 -SKLE--GHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT 948 (1091)
Q Consensus 879 -~~l~--~h~~~V~~l~~spdg~~las~s---~Dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 948 (1091)
..+. .-.+.|+++.+||||..+|... .++.|.+=-+...... ....+...... ...+..++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence 1111 1122899999999999988665 3577777665432211 11112222111 13688999999999
Q ss_pred EEEEE
Q 001367 949 RFLLV 953 (1091)
Q Consensus 949 ~la~~ 953 (1091)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88874
No 393
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.035 Score=60.11 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=94.5
Q ss_pred CCCEEE-EEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEE-----EEeeCCCcEEEEeCCCC-c-ee
Q 001367 407 DGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV-----ITCGDDKTIKVWDAVTG-S-RT 478 (1091)
Q Consensus 407 dg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l-----~s~~~d~~i~iwd~~~~-~-~~ 478 (1091)
+..+|. ++.....++--|++.|+.+. ++.-|.. |+-+.+.|+.+.-.+ +.|-.|..|.-||++-. . .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 444444 34445568888999998766 4444554 888888887652112 23445888999998732 2 22
Q ss_pred EEecCCC----cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 479 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 479 ~~~~~~~----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
..-++|. ....|.+- ..+| +++.|+.+|.|++||--......-+.+-+.+|..+..+.||+++++.+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aT--T~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFAT--TESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceeee--cCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 2223332 22333333 4444 899999999999999744444446777788999999999999998765 4
Q ss_pred eEEEEEec
Q 001367 555 SFLVEWNE 562 (1091)
Q Consensus 555 ~~i~iwd~ 562 (1091)
.++.+.+.
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 45666654
No 394
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.70 E-value=0.0029 Score=43.07 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=32.3
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEE
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 363 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd 363 (1091)
....+..|...|.+++|+|++. ++++|+.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 4566778999999999999997 679999999999996
No 395
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.092 Score=57.07 Aligned_cols=145 Identities=9% Similarity=0.102 Sum_probs=101.3
Q ss_pred EEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCE--E-----EEEeCCCcEEEEEcCCCceeeeeeeeccC
Q 001367 857 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD 929 (1091)
Q Consensus 857 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~--l-----as~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 929 (1091)
++.++.....++-.|++.|+.+..+.-|.+ |+-+.+.|+.+. | +.|=.|..|+-||..-.... .+...+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence 444555666888899999999999987777 777888887632 2 22456777999998743221 111112
Q ss_pred CCcC-CCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 930 GVMT-LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 930 ~~~~-~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
++.- .-....|.+-..+|...+.+.+|.|++||- .+..-.+.+++-..+|..|..+.||++|+.. .+.++.+-++.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 2211 002355666667777666689999999997 6777777788889999999999999998854 46677777654
No 396
>PHA02713 hypothetical protein; Provisional
Probab=96.65 E-value=0.12 Score=60.75 Aligned_cols=195 Identities=9% Similarity=-0.003 Sum_probs=104.7
Q ss_pred CCcEEEEEeCC------CeEEEEeccCcce--eeeeccccCCeEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCcee
Q 001367 854 DNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ 920 (1091)
Q Consensus 854 ~~~~la~g~~d------g~i~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~las~s~Dg-----~i~vwd~~~~~~~ 920 (1091)
++.+.++|+.+ ..+..||..+.+- +..+.........+ .-+|+..+.||.++ .+..||..+.+..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 66777888754 3578888877643 22222111122222 23678888888764 4788998875533
Q ss_pred eeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ec-----------------------CeEEEEEcCCcceeeeeecCC
Q 001367 921 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----------------------THLAIYEAEELTCLKQWFPIS 976 (1091)
Q Consensus 921 ~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d-----------------------~~i~vwd~~~~~~~~~~~~~h 976 (1091)
....+..... ....+ .-+|+..+.| .+ ..+..||..+.+....-...
T Consensus 381 ~~~~mp~~r~------~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~- 451 (557)
T PHA02713 381 MLPDMPIALS------SYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW- 451 (557)
T ss_pred ECCCCCcccc------cccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC-
Confidence 2211111111 11122 2366666664 22 24778888877653221111
Q ss_pred ccCEEEEEEeeCCCEEEEEEcCC------cEEEEeCCC-CceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEe
Q 001367 977 SVPISQATFSCDCRMVFTSFVDG------TLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1049 (1091)
Q Consensus 977 ~~~v~~v~fs~dg~~l~t~~~dg------~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~ 1049 (1091)
......-+..-+|+..+.|+.++ .|..||..+ .+... ...++.. .....++.. ++...++||
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~----~~~m~~~-----r~~~~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL----ITTTESR-----LSALHTILH--DNTIMMLHC 520 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE----ccccCcc-----cccceeEEE--CCEEEEEee
Confidence 11222223345677777777542 467888887 55441 1122222 111112222 578999999
Q ss_pred cCC--cEEEEecCCCCCCcccCCCC
Q 001367 1050 TNG--EVYVIEPNEPGDTWAVLPPD 1072 (1091)
Q Consensus 1050 ~dg--~v~~w~~~~~~~~~~~~~~~ 1072 (1091)
.|| ++-.+|+...+ |....|-
T Consensus 521 ~~~~~~~e~yd~~~~~--W~~~~~~ 543 (557)
T PHA02713 521 YESYMLQDTFNVYTYE--WNHICHQ 543 (557)
T ss_pred ecceeehhhcCccccc--ccchhhh
Confidence 999 77788886644 8766553
No 397
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.61 E-value=0.092 Score=45.07 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=65.7
Q ss_pred eEEEEECC---CC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEc
Q 001367 888 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 963 (1091)
Q Consensus 888 V~~l~~sp---dg-~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~ 963 (1091)
|++|++.. || +.|+.||.|..|++|+=+. .+...... ..++.++-...+++..+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 67777764 32 6799999999999998765 22222111 2578888888877666678999999985
Q ss_pred CCcceeeeeecCCccCEEEEEEee---CC-CEEEEEEcCCcEEE
Q 001367 964 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLSI 1003 (1091)
Q Consensus 964 ~~~~~~~~~~~~h~~~v~~v~fs~---dg-~~l~t~~~dg~v~i 1003 (1091)
.. +.|...-...+.++++.. || .-|++|-.+|.|-+
T Consensus 71 ~~----RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 SQ----RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cc----eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 32 222222234466666544 33 35888888888753
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.53 E-value=0.95 Score=46.13 Aligned_cols=186 Identities=9% Similarity=0.106 Sum_probs=114.0
Q ss_pred CCeeEEEecCCCCEEEEEe-C--CeEEEEEccCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce
Q 001367 802 EAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 877 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~-d--g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~ 877 (1091)
.-...+.|..+|.++-+.+ . ..|+.+|+.+++..+...-+. ----.++.. ++++....-.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3456788878888777776 3 469999999999876654333 233455555 345666667889999999999888
Q ss_pred eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecC
Q 001367 878 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET 956 (1091)
Q Consensus 878 ~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~ 956 (1091)
+.++. ..+.=..++ .||+.|+.+.....|.++|.++-+......+.. .+... ..+.-+.+- +|...|-. ...
T Consensus 123 ~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv--~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPV--SNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE-----EEEEEEE-TTEEEEEETTSS
T ss_pred EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEEC--CCcEeEEEE-cCEEEEEeCCCC
Confidence 88776 345667777 467777776667779999988755443322221 22111 245556665 56555543 567
Q ss_pred eEEEEEcCCcceeeeeecC-----------C---ccCEEEEEEeeCCCEEEEEE
Q 001367 957 HLAIYEAEELTCLKQWFPI-----------S---SVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 957 ~i~vwd~~~~~~~~~~~~~-----------h---~~~v~~v~fs~dg~~l~t~~ 996 (1091)
.|...|..+|+....+-.. + ..-...|++.|++..+...+
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 8888899999877643110 1 23467899998776555444
No 399
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.43 E-value=0.069 Score=63.31 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=97.5
Q ss_pred CceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc-eEEEeeccc---CCceEEEEEecCCeEEEEecCCCCceeee-c--
Q 001367 454 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVDY-D-- 526 (1091)
Q Consensus 454 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-- 526 (1091)
+.++|........|+-.|++.|+.+..+..|... |..++.... -+....+.|-.+..+..||.+-....... .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3334555556788999999999999999887754 776654211 01234667778888999999875422211 1
Q ss_pred --CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEE
Q 001367 527 --APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1091)
Q Consensus 527 --~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~i 604 (1091)
.......|++-+.+|. ||+|+. +|.|++||-...+....+.+.. .+|..|..+.||+++++.+. ..+.+
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLlL 643 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLLL 643 (794)
T ss_pred ccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEEE
Confidence 1233577888777775 566655 5559999954444444455544 89999999999999988775 35555
Q ss_pred EEC
Q 001367 605 WDM 607 (1091)
Q Consensus 605 wd~ 607 (1091)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 553
No 400
>PRK13684 Ycf48-like protein; Provisional
Probab=96.28 E-value=2.3 Score=46.46 Aligned_cols=156 Identities=10% Similarity=0.018 Sum_probs=86.0
Q ss_pred cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcC
Q 001367 885 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 964 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~ 964 (1091)
.+.+.++.+.|++.++++ +..|.+.. ..+.+. .....+... .. ..+.++.+.++++.++++..|.+.+=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~-s~~~gg-~tW~~~~~~--~~---~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYS-TWEPGQ-TAWTPHQRN--SS---RRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEE-EcCCCC-CeEEEeeCC--Cc---ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 457889999999877664 45564432 111111 011112111 11 36889999999999888887876543344
Q ss_pred CcceeeeeecC---CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCC
Q 001367 965 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1041 (1091)
Q Consensus 965 ~~~~~~~~~~~---h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1041 (1091)
.|..-.....+ ....+.++.|.+++..++ ++.+|.|. .....|+.-.........+. ..+ .+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC--
Confidence 44432221111 134578899999888666 45677654 45555543322211111111 233 233443
Q ss_pred CCeEEEEecCCcEEEEec
Q 001367 1042 PTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1042 ~~~l~~g~~dg~v~~w~~ 1059 (1091)
++....++..|.|..|+-
T Consensus 313 ~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCceEEECCCceEEEecC
Confidence 345666778899988875
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.22 E-value=1.4 Score=44.94 Aligned_cols=200 Identities=16% Similarity=0.246 Sum_probs=120.1
Q ss_pred cccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEec
Q 001367 731 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 810 (1091)
Q Consensus 731 ~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 810 (1091)
+-...+.+++|+|+.+.|++........|+= ...|..+.+..+.+ -.....+++.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEe
Confidence 3455599999999999999998876655542 23455566666654 3345567777
Q ss_pred CCCCEEEEEe-CCeEEEEEccCceeEEE-------e---cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc-e-
Q 001367 811 KNDAYLFSAS-GGVISLYIVMTFKTILT-------I---MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-V- 877 (1091)
Q Consensus 811 ~dg~~la~~~-dg~i~iwd~~~~~~~~~-------~---~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~-~- 877 (1091)
.+|+++++-. ++.+.++.+........ + ...+..-..+||+| ..+.|..+-+-.=+.||.+..+. .
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 7888777765 67787777664422211 1 11245678899999 55666667766667777665332 1
Q ss_pred -eeeecccc-------CCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCC
Q 001367 878 -ISKLEGHS-------KRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 948 (1091)
Q Consensus 878 -~~~l~~h~-------~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 948 (1091)
+.....+. ..|.++.|.+ .+.+|+-+.+++.+...|................|-...-.....++..++|.
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 11111222 3467778876 45666767778888888877654222222223333222223445677777777
Q ss_pred EEEEEecC
Q 001367 949 RFLLVHET 956 (1091)
Q Consensus 949 ~la~~~d~ 956 (1091)
+-+++.-+
T Consensus 297 lYIvSEPn 304 (316)
T COG3204 297 LYIVSEPN 304 (316)
T ss_pred EEEEecCC
Confidence 66555443
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.16 E-value=0.39 Score=56.42 Aligned_cols=235 Identities=12% Similarity=0.085 Sum_probs=130.6
Q ss_pred CCCCEEEEEe-C------CeEEEEEccCceeEEEecC-CCCCeEEEEEcCCCCcEEEEEeCC-C-----eEEEEeccCcc
Q 001367 811 KNDAYLFSAS-G------GVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDD-S-----TILIYNARSSE 876 (1091)
Q Consensus 811 ~dg~~la~~~-d------g~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~d-g-----~i~iwd~~~~~ 876 (1091)
..+..++.|+ . ..+..||..++.-.....- ....-.++++. ++.+.++|+.| | ++..||..+.+
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3445555554 2 3588899887643322221 22233445555 56788899988 3 78888888765
Q ss_pred ee--eeeccccCCeEEEEECCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCE
Q 001367 877 VI--SKLEGHSKRVTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 949 (1091)
Q Consensus 877 ~~--~~l~~h~~~V~~l~~spdg~~las~s~Dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 949 (1091)
-. ..+...........+ +|...|+||.||. |..||..+.+......+... .-..-...-+|+.
T Consensus 361 W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGKL 430 (571)
T ss_pred eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCEE
Confidence 33 223222222222222 6888899999974 77788777553221111111 1122333446666
Q ss_pred EEE-Eec------CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCc-----EEEEeCCCCceEEEeec
Q 001367 950 FLL-VHE------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-----LSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 950 la~-~~d------~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~-----v~iwd~~~~~~~~~~~~ 1017 (1091)
.++ |.+ ..+..||..+.......... ..+...-.-.-++...+.||.|+. |..+|..+.+.... .
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~-~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~- 507 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN-TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-A- 507 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcc-cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc-c-
Confidence 666 323 35889998887765432111 111111233456778888887763 78888888766532 1
Q ss_pred ccccCCCCcccccceeEEEeCCCCCCeEEEEecCC-----cEEEEecCCCCCCcccCCC
Q 001367 1018 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1071 (1091)
Q Consensus 1018 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg-----~v~~w~~~~~~~~~~~~~~ 1071 (1091)
..+.. ...+. ++.. ++...++|+.|| +|-.||... .+|...++
T Consensus 508 --~m~~~--rs~~g--~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~--d~W~~~~~ 555 (571)
T KOG4441|consen 508 --PMTSP--RSAVG--VVVL---GGKLYAVGGFDGNNNLNTVECYDPET--DTWTEVTE 555 (571)
T ss_pred --cCccc--ccccc--EEEE---CCEEEEEecccCccccceeEEcCCCC--CceeeCCC
Confidence 11111 11111 1112 478899999987 567787755 44876665
No 403
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.14 E-value=1.2 Score=48.32 Aligned_cols=239 Identities=14% Similarity=0.096 Sum_probs=102.0
Q ss_pred CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE--C----CC
Q 001367 345 VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY--S----KH 418 (1091)
Q Consensus 345 dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~--~----d~ 418 (1091)
+.++|++-|-.++.|.|.|+.+...... -.++.+... .+. +..-.....+---|+|+.++++- . .|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~-l~KvIe~~e---v~~----k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~G 157 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPR-LHKVIEPEE---VFE----KTGLSRPHTVHCLPDGRIMISALGDADGNGPG 157 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-E-EEEEE-HHH---HHH----HH-EEEEEEEEE-SS--EEEEEEEETTS-S--
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCc-eEeeeCHHH---HHh----hcCCCCCceeeecCCccEEEEeccCCCCCCCC
Confidence 4566666666789999999985432211 011111100 000 00011222334456888888862 2 24
Q ss_pred EEEEEEeeCCcccceeEEEe-ccccCeeEEEEcCCCCceEEEEeeC--------------------CCcEEEEeCCCCce
Q 001367 419 IVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGD--------------------DKTIKVWDAVTGSR 477 (1091)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~~--------------------d~~i~iwd~~~~~~ 477 (1091)
.+.+.|-++-+..... +.. +....-..+-|.|.-+ +++|... ..++.+||+.+.+.
T Consensus 158 gf~llD~~tf~v~g~W-e~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 158 GFVLLDGETFEVKGRW-EKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp EEEEE-TTT--EEEE---SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred cEEEEcCcccccccee-ccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 5777776654432211 111 1122345666777666 6666542 46899999999999
Q ss_pred eEEecCCC--cceEEEeecccCCceE-EEEEecCCeEEEEecCCCCc-----eeeecCC-----------------CCcE
Q 001367 478 TYSFEGHG--APVYSLCPHAKENIHF-IFSISVDGKIKAWLYDSLGA-----RVDYDAP-----------------GLGC 532 (1091)
Q Consensus 478 ~~~~~~~~--~~v~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~-----~~~~~~~-----------------~~~i 532 (1091)
++++.--. .....+.|..+++..+ ++.+.....|..|--..... ...+... ..-+
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 99986433 2355677766665544 34444455555553322211 1111110 2246
Q ss_pred EEEEEcCCCCEEEEEecCCCCceEEEEEecCCc---eeeEEEe-cccc------------cccceEEEEEcCCCCEEEEE
Q 001367 533 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQ-GLQL------------QHNSVSVVHFDTAKDQILAA 596 (1091)
Q Consensus 533 ~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~-~~~~------------~~~~v~~v~~~~~~~~l~~~ 596 (1091)
+.+..|.|.++|..+.. ..+.|+.||+... +++.... +... -.+....+..|-||++++..
T Consensus 315 tDI~iSlDDrfLYvs~W---~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNW---LHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp --EEE-TTS-EEEEEET---TTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EeEEEccCCCEEEEEcc---cCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 88999999999998764 4667999999863 2222211 1110 01223566777777777765
Q ss_pred e
Q 001367 597 G 597 (1091)
Q Consensus 597 s 597 (1091)
.
T Consensus 392 n 392 (461)
T PF05694_consen 392 N 392 (461)
T ss_dssp -
T ss_pred e
Confidence 3
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.06 E-value=0.47 Score=55.74 Aligned_cols=234 Identities=11% Similarity=0.026 Sum_probs=120.7
Q ss_pred CCCEEEEEECC------CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC------CcEEEEeCCC
Q 001367 407 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT 474 (1091)
Q Consensus 407 dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~~ 474 (1091)
.+..+++|+.+ ..+..||..++.-.. ...+. +...-.+++... +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 44556666655 367888888763221 11122 222233444443 44 77888888 3677888887
Q ss_pred CceeE--EecCCCcceEEEeecccCCceEEEEEecCCe-----EEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 475 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 475 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
.+-.. .+...........+ +|.+.++|+.||. +..||..+.+-...-......-..-...-+|+..++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 76332 11111111111112 6678888998875 6667766544322222222111112223467777777
Q ss_pred ecCCCCc--eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeEEEEeCCC
Q 001367 548 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 548 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~ 620 (1091)
|.++..+ ..+..||..+......-.... ...... ++. -++...+.||.|+ +|..||..+.+....-....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 7555432 678899988876543332222 011122 222 2455666677665 37788888876655432222
Q ss_pred CCCCCceEEEccCCCEEEEEECCC-----eEEEEECCCC
Q 001367 621 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPES 654 (1091)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~ 654 (1091)
....+..+. -+++..++|+.|| +|..||..++
T Consensus 512 ~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 512 PRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence 211112222 2466777777764 4556665554
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.05 E-value=3 Score=45.56 Aligned_cols=240 Identities=14% Similarity=0.166 Sum_probs=119.7
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEEccCcee---EEEe----cCCCCCeEEEEEcCC---CCcEEEEEeCC--------
Q 001367 803 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD-------- 864 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---~~~~la~g~~d-------- 864 (1091)
..+.|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 45789999999998887789999999 44443 2222 123456789999992 24444443321
Q ss_pred CeEEEEeccCc-------ce-eeeecc---ccCCeEEEEECCCCCEEEEEeCCCc-------------EEEEEcCCCcee
Q 001367 865 STILIYNARSS-------EV-ISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-------------IFVWDVDGWGIQ 920 (1091)
Q Consensus 865 g~i~iwd~~~~-------~~-~~~l~~---h~~~V~~l~~spdg~~las~s~Dg~-------------i~vwd~~~~~~~ 920 (1091)
..|.-|....+ +. +..+.. .......|+|.|||.+.++.+..+. |.-.+... ...
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCC
Confidence 24444544433 11 122222 2234566999999988887765442 21112111 000
Q ss_pred eeeee--------e-ccCCCcCCCCCceEEEEcCC-CCEEEE--EecCeEEEEEcCCccee-------------------
Q 001367 921 TCRSL--------Q-TPDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTCL------------------- 969 (1091)
Q Consensus 921 ~~~~~--------~-~~~~~~~~~~~i~~l~fs~d-g~~la~--~~d~~i~vwd~~~~~~~------------------- 969 (1091)
..... . ...|+ .....++|.|. |.+.++ +.+..=.|.-+..|..-
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 00000 0 00011 12467999999 777776 44432222222222110
Q ss_pred --------eeeecCCccCEEEEEEee-------CCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeE
Q 001367 970 --------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1034 (1091)
Q Consensus 970 --------~~~~~~h~~~v~~v~fs~-------dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1034 (1091)
..+.-.+...+..+.|-. +|.++++.-..+.|....+..+..+.... ..+ . ...-+++.
T Consensus 237 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~---~~~~r~~~ 310 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL-G---GFGGRPRD 310 (331)
T ss_dssp SS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC-T---TSSS-EEE
T ss_pred cCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc-c---cCCCCceE
Confidence 000111245667777764 45566665556677777776553332222 111 1 11124567
Q ss_pred EEeCCCCCCeEEEEecCCcEE
Q 001367 1035 IAAHPLKPTQFAVGLTNGEVY 1055 (1091)
Q Consensus 1035 ~~~~p~d~~~l~~g~~dg~v~ 1055 (1091)
+++.| ||.++++-+.+|.|.
T Consensus 311 v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 311 VAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEET-TSEEEEEE-TTTTEE
T ss_pred EEEcC-CCeEEEEECCCCeEe
Confidence 88899 588888888888874
No 406
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.071 Score=62.95 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=75.7
Q ss_pred CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc
Q 001367 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1091)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1091)
.+..++.|+..|.+-..|+.+. ++....-..-.++|++++|+.||+ .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667888988898988888764 221111122356999999999999 788899999999999999999999988888
Q ss_pred ceEEEeecc-cCCceEEEEEecCCe
Q 001367 487 PVYSLCPHA-KENIHFIFSISVDGK 510 (1091)
Q Consensus 487 ~v~~~~~~~-~~~~~~l~s~~~dg~ 510 (1091)
+..++-+.. ..++..++++...|.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc
Confidence 887775442 334446777777776
No 407
>PHA02713 hypothetical protein; Provisional
Probab=96.04 E-value=0.27 Score=57.85 Aligned_cols=201 Identities=8% Similarity=-0.032 Sum_probs=98.2
Q ss_pred CCCceEEEEeeCC------CcEEEEeCCCCceeE--EecCCCcceEEEeecccCCceEEEEEecCC-----eEEEEecCC
Q 001367 452 PCKQISVITCGDD------KTIKVWDAVTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS 518 (1091)
Q Consensus 452 d~~~~~l~s~~~d------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~ 518 (1091)
++. +.+.||.+ ..+..||..+..-.. .+.........+.+ ++.+.+.|+.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 455 56666643 347788877764321 11111111112222 556777777654 377888765
Q ss_pred CCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC-------------------ceEEEEEecCCceeeEEEeccccccc
Q 001367 519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-------------------ESFLVEWNESEGAIKRTYQGLQLQHN 579 (1091)
Q Consensus 519 ~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~-------------------~~~i~iwd~~~~~~~~~~~~~~~~~~ 579 (1091)
..=...-..........+..-+|+..+.||.++.. ...+..||..+.+-...-.... ...
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~ 455 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GTI 455 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-ccc
Confidence 43221111111111111112356666666643210 2457889988765432222111 011
Q ss_pred ceEEEEEcCCCCEEEEEeCC------CeEEEEECCC-CeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC--eEEEEE
Q 001367 580 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE 650 (1091)
Q Consensus 580 ~v~~v~~~~~~~~l~~~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iwd 650 (1091)
....+. -+++..+.|+.+ ..+..||..+ .+................+++ +++..++|+.++ .+..||
T Consensus 456 ~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 456 RPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcC
Confidence 111222 245555556643 2467899887 554433332222112222223 678888998887 777888
Q ss_pred CCCCCeecccccc
Q 001367 651 TPESNSVDAAGVL 663 (1091)
Q Consensus 651 ~~~~~~~~~~~~~ 663 (1091)
..+.+.......|
T Consensus 532 ~~~~~W~~~~~~~ 544 (557)
T PHA02713 532 VYTYEWNHICHQH 544 (557)
T ss_pred cccccccchhhhc
Confidence 8777555444444
No 408
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.90 E-value=0.13 Score=56.91 Aligned_cols=160 Identities=13% Similarity=0.078 Sum_probs=90.6
Q ss_pred CCCeEEEEEcCCCCcEEEEEe--CCCeEEEEeccCcceeeeeccccCCeEEEEECCC----CCEEEEEeCCCcEEEEEcC
Q 001367 842 SPTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 842 ~~~i~~l~~s~~~~~~la~g~--~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd----g~~las~s~Dg~i~vwd~~ 915 (1091)
-.++..+||.. +.+.+.+.- .+|.+++=| .+.+..| ..|..++|+|- ...|........|.||.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 34788899984 444444432 233333222 1233444 45999999984 3345556778889999987
Q ss_pred CCceeee--eeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEE
Q 001367 916 GWGIQTC--RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 992 (1091)
Q Consensus 916 ~~~~~~~--~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l 992 (1091)
....... ..-++-+-..+.+--...+.|+|....|++ .....-.++++......-..-....+.|-+.+|.+||+.|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 3222211 122222222222123457889999999988 3333334455543322221112337889999999999887
Q ss_pred EEEEc-CCcEEEEeCCCC
Q 001367 993 FTSFV-DGTLSIHEASNL 1009 (1091)
Q Consensus 993 ~t~~~-dg~v~iwd~~~~ 1009 (1091)
+++-. .=.-+|||-...
T Consensus 171 VVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEeCCeEEEEEecCchh
Confidence 65533 335788986544
No 409
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.85 E-value=1.3 Score=48.31 Aligned_cols=254 Identities=10% Similarity=0.042 Sum_probs=105.5
Q ss_pred CceEEEEEe-cCCeEEEEecCCCCc----eeeecC---CC----CcEEEEEEcCCCCEEEEEec--CCCCceEEEEEecC
Q 001367 498 NIHFIFSIS-VDGKIKAWLYDSLGA----RVDYDA---PG----LGCTRMAYSANGRRLFSCGT--SKEGESFLVEWNES 563 (1091)
Q Consensus 498 ~~~~l~s~~-~dg~i~iwd~~~~~~----~~~~~~---~~----~~i~~~~~s~d~~~l~~~~~--~~~~~~~i~iwd~~ 563 (1091)
+.++|+..+ ..++|.+.|..+... ...+.. .. ..-..+-.-|+|+.++++-. ++++.+-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 335666665 678899999874322 112221 00 12233444589988887654 34556778899988
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEe--------------------CCCeEEEEECCCCeeEEEEeCCCCCC
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1091)
+.+.............--..+.+.|..+.+++.. ...++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8888777765442223345677888888888753 23579999999999999998764322
Q ss_pred CCceEEEc--cCCCEEEEEE-CCCeEEEEEC-CCCCee--cccccccccceeeeeccccccccccccCCcccCCCCCCCC
Q 001367 624 ENPRICFN--KNGTLLAVIA-NENRIKILET-PESNSV--DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDV 697 (1091)
Q Consensus 624 ~v~~v~~s--~~~~~l~~~~-~dg~i~iwd~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~ 697 (1091)
....+.|. |+..+-++++ -.++|..|-- ..+.-. ..+......+..-.+.+. ....+..-+.+.....|.|.
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~m--l~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEM--LKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GG--GGGG-EE------EEE-TTS
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccc--ccccccCCCceEeEEEccCC
Confidence 23455654 4444433333 2344554433 333110 000000000000000000 00000001122222237777
Q ss_pred Ccc-cccccccccccccccccC-CcccceeecCCc------------cccccEEEEEEecCCCeEEEeec
Q 001367 698 KPE-ISVEAENKSEVEKPLFAR-PSECQSLLLPSK------------VKANKISRLTYNNGGQAIFALAS 753 (1091)
Q Consensus 698 ~~l-~s~~~d~~i~~w~~~~~~-~~~~~~~~~~~~------------~~~~~i~~~~~s~dg~~l~~~~~ 753 (1091)
++| ++.-.+|.+|.||+.-.. +.....+.+... .-.+...-+..|.||++|..+.+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 776 567788999999976322 222222222211 11234467888889988876653
No 410
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.84 E-value=4 Score=45.37 Aligned_cols=279 Identities=13% Similarity=0.096 Sum_probs=147.4
Q ss_pred CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC-----CCCEEEEE
Q 001367 745 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFSA 819 (1091)
Q Consensus 745 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----dg~~la~~ 819 (1091)
...|++|+..|.++||+-......+. ..+.... -..+|..++.-+ +...||+-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~-----------------~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE-----------------DLLLETQ-----LKDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc-----------------cEEEEEe-----cCCcEEEEEeccccCCCCcceEEEe
Confidence 45788999999999998643322111 1122222 234555555322 34567776
Q ss_pred eCCeEEEEEccC--ce-------eEEEecCCC--CCeEEEEEcCC----CCcEEEEEeCCCeEEEEeccCcceeeeeccc
Q 001367 820 SGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEGH 884 (1091)
Q Consensus 820 ~dg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~----~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h 884 (1091)
.-..+.+|.+.. |. .+..+..|. .....++.-|. +..+|.+=+.||.+.+|+-+.-.....+.+
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 678888887731 11 111122222 22333443332 246888999999999999776554444443
Q ss_pred cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee-------------------eeeeeccCCCcCCCCCceEEEEcC
Q 001367 885 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-------------------CRSLQTPDGVMTLAPSETHIQFHK 945 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~-------------------~~~~~~~~~~~~~~~~i~~l~fs~ 945 (1091)
.--...+++.+....+++++.+..|.-|....-.... ..-....-|... -.+..+.++.
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~--l~i~v~~~~~ 251 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA--LDIQVVRFSS 251 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee--EEEEEEEcCC
Confidence 2223347788888889999988888888753210000 000000000000 1233444444
Q ss_pred CCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEee----CCC---EEEEEEcCCcEEEEeCCCCceEEEeecc
Q 001367 946 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSC----DCR---MVFTSFVDGTLSIHEASNLEVQCRILST 1018 (1091)
Q Consensus 946 dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~----dg~---~l~t~~~dg~v~iwd~~~~~~~~~~~~~ 1018 (1091)
....+++-.+..+.+.+.. |.......- .-.+.....|.. ++. .+++++.++++.||.=.+....+.+
T Consensus 252 ~~~~IvvLger~Lf~l~~~-G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l--- 326 (418)
T PF14727_consen 252 SESDIVVLGERSLFCLKDN-GSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL--- 326 (418)
T ss_pred CCceEEEEecceEEEEcCC-CeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC---
Confidence 5555666556667776653 443332211 111121122222 222 4778889999999975444333222
Q ss_pred cccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 1019 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 1019 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
+.. .| .+.++.-++-...|++-+.+|.+.+-=+-.
T Consensus 327 ---~~~----PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 327 ---PHV----PV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred ---CCC----CE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 111 12 223333332357899999999999877733
No 411
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.059 Score=63.59 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=69.7
Q ss_pred EEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCC
Q 001367 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 428 (1091)
Q Consensus 349 llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~ 428 (1091)
++|.|+..|.|...|+.+.-.... | -..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~-----~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLH-----Q-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhh-----c-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 568888888888888765311000 0 1123579999999999999999999999999999998
Q ss_pred cccceeEEEeccccC---eeEEEEcCCCCceEEEEeeCCCcEEEEeC
Q 001367 429 SDARQQLEIDAHVGN---VNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 429 ~~~~~~~~~~~h~~~---v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
+.++. +..|..+ |..+.+..++. .++++...|. +|.+
T Consensus 163 k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 77763 4444444 44445555666 6788877775 6654
No 412
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.2 Score=59.62 Aligned_cols=248 Identities=9% Similarity=0.059 Sum_probs=136.1
Q ss_pred CCCeeEEEecCCCCEEEEEe--C-CeEEEEEccCceeEE-----EecC------CCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001367 801 QEAVPCFALSKNDAYLFSAS--G-GVISLYIVMTFKTIL-----TIMP------PSPTATSLAFNPHDNNVIAIGMDDST 866 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~--d-g~i~iwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~~~~~la~g~~dg~ 866 (1091)
...+..++..+|+...++.. + -.|..||+.+...-+ .+.. ......++.|.|.=....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44667778888887776654 3 358999987543222 1111 12345677787743445566788999
Q ss_pred EEEEeccCcce-eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcC
Q 001367 867 ILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 945 (1091)
Q Consensus 867 i~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~ 945 (1091)
|++..+..... +..+. -...+++++|+|.|+.++.|-..|++.-|...-.... .+..+.... ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence 99887754332 22322 4567899999999999999999999988876542211 122222111 13688888887
Q ss_pred CCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCC
Q 001367 946 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1025 (1091)
Q Consensus 946 dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 1025 (1091)
.-.++++-.. -++ . ...+....++. ..-.-+|.+.+-..-.+.. .| ..++...
T Consensus 254 t~eflvvy~n--------~ts----~----~~dpd~y~~~~------~k~kp~g~~nF~E~~d~tp--pf---g~~~rq~ 306 (1405)
T KOG3630|consen 254 TQEFLVVYGN--------VTS----E----TDDPDSYDQKM------YKIKPDGSANFQETFDITP--PF---GQIVRQP 306 (1405)
T ss_pred ceeEEEEecc--------ccc----C----cCCchhhhhcc------ccccCcceeeeccccCCCC--Cc---cccCccc
Confidence 7777765111 000 0 00111111111 1111333333322221111 01 0122221
Q ss_pred cccccceeEEEeCCCCCCeEEEEecC-CcEEEEecCCCCCCcccCCCCccccCCCCcCcccc
Q 001367 1026 SCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGD 1086 (1091)
Q Consensus 1026 ~~~~v~~~~~~~~p~d~~~l~~g~~d-g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1086 (1091)
|--.+ ....|.|+|.++++++..- ..|-+|... ..|....+.+...+..+.+++.|
T Consensus 307 h~y~~--~L~~W~~~~~~vVvvansaSsEvsila~~---~qW~~w~~vde~ra~LP~s~k~d 363 (1405)
T KOG3630|consen 307 HMYKV--TLSGWIEPDANVVVVANSASSEVSILASM---KQWIEWSQVDEKRAVLPISEKTD 363 (1405)
T ss_pred hhHHH--hhhhhcccccceEEEecccccchhhhhhh---cceeeccccccceeeecccccCC
Confidence 11111 2346777666666655544 468889883 45888888887555555554444
No 413
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.59 E-value=2 Score=42.03 Aligned_cols=144 Identities=15% Similarity=0.106 Sum_probs=79.2
Q ss_pred ccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC--------cceEEEeecccCCceEEEEEecCCeEE
Q 001367 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--------APVYSLCPHAKENIHFIFSISVDGKIK 512 (1091)
Q Consensus 441 ~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~l~s~~~dg~i~ 512 (1091)
..+.+.-..+|+|++ +.-+-+.-+. ++....|.+-.-+.+|. ..-+.++|+.. ...+.+.-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gry-y~GtMad~~~--~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRY-YGGTMADFGD--DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCce-eeeeeccccc--cccccccEEEEeccCCCceeeehhccCCcccccccc-CcEEEEEccCceEEe
Confidence 345667778999993 2222222111 11111222222222332 22344566422 223445566777787
Q ss_pred EEecC--CC-----CceeeecC----CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccce
Q 001367 513 AWLYD--SL-----GARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 581 (1091)
Q Consensus 513 iwd~~--~~-----~~~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v 581 (1091)
-||.+ ++ +.+..+.. .......++...+|+..+++.. .++|...|..+|+.+..+.-.. ..+
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~qi 256 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---PQI 256 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---Cce
Confidence 78743 22 22222222 1112335666778887777765 5569999999999999998876 789
Q ss_pred EEEEEcCC-CCEEEE
Q 001367 582 SVVHFDTA-KDQILA 595 (1091)
Q Consensus 582 ~~v~~~~~-~~~l~~ 595 (1091)
++++|.-. -..+++
T Consensus 257 tsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 257 TSCCFGGKNLDILYV 271 (310)
T ss_pred EEEEecCCCccEEEE
Confidence 99999643 234444
No 414
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.59 E-value=1.5 Score=44.70 Aligned_cols=171 Identities=9% Similarity=0.106 Sum_probs=108.6
Q ss_pred eccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEE
Q 001367 881 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA 959 (1091)
Q Consensus 881 l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~ 959 (1091)
+.|-...|.++.|+|+.+.|.+......-.||=-..|......++.... ....+.+.-+|++.++ -.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence 3444556999999999999998888777777766666655444443332 2457888899998888 4677888
Q ss_pred EEEcCCcceeeeee--------cCC-ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCccccc
Q 001367 960 IYEAEELTCLKQWF--------PIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHV 1030 (1091)
Q Consensus 960 vwd~~~~~~~~~~~--------~~h-~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 1030 (1091)
++.+.......... ..+ +.....++|+|.++.|..+-+-.-+.|+.+..+... +......... ....+
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~--l~~~~~~~~~-~~~~~ 230 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS--LSVHASLDPT-ADRDL 230 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc--cccccccCcc-cccce
Confidence 87776553222111 112 566788999999998888888888888877643211 1100111110 01111
Q ss_pred ce---eEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 1031 YP---HAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 1031 ~~---~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
+. ..+.|++..+.+|+-+.+++.+...+...
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 11 13567776778888888888887777644
No 415
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.57 E-value=3.9 Score=43.32 Aligned_cols=231 Identities=11% Similarity=0.051 Sum_probs=107.4
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEec---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce-e
Q 001367 803 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-I 878 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~-~ 878 (1091)
...++.|..+ ..++++..+. .+...+.|+.=..+. .-......+.... ++..++ ++..|.|+.= .+.|+. .
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEEE-SSTTSSEE
T ss_pred eEEEEEecCC-ceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEEe-CCCCCCee
Confidence 4566777543 4455555553 333333333222221 1122333343333 333333 3444544322 222322 2
Q ss_pred eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeE
Q 001367 879 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL 958 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i 958 (1091)
.....-.+.+..+.-++||+++++++.-....-||-.... ....... .. ..|..+.|+||+.+.+++..+.|
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~--~~---~riq~~gf~~~~~lw~~~~Gg~~ 209 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRN--SS---RRIQSMGFSPDGNLWMLARGGQI 209 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE----SS---S-EEEEEE-TTS-EEEEETTTEE
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccC--cc---ceehhceecCCCCEEEEeCCcEE
Confidence 3334455778999999999999877666656677765421 1122221 11 36999999999999888888888
Q ss_pred EEEE-cCCcceeee-eec--CCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeE
Q 001367 959 AIYE-AEELTCLKQ-WFP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1034 (1091)
Q Consensus 959 ~vwd-~~~~~~~~~-~~~--~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1034 (1091)
+.=+ ....+.... ..+ ...-.+..++|.+++...|+| ..|.+ +...+.|+.=.+-......+.+ ++.+
T Consensus 210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~g-g~G~l-~~S~DgGktW~~~~~~~~~~~n-----~~~i- 281 (302)
T PF14870_consen 210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVG-GSGTL-LVSTDGGKTWQKDRVGENVPSN-----LYRI- 281 (302)
T ss_dssp EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEE-STT-E-EEESSTTSS-EE-GGGTTSSS--------EE-
T ss_pred EEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEe-CCccE-EEeCCCCccceECccccCCCCc-----eEEE-
Confidence 8877 222222111 111 113458899999998877765 45544 4566666554444323333333 4433
Q ss_pred EEeCCCCCCeEEEEecCCcEEEE
Q 001367 1035 IAAHPLKPTQFAVGLTNGEVYVI 1057 (1091)
Q Consensus 1035 ~~~~p~d~~~l~~g~~dg~v~~w 1057 (1091)
.|.+ +..-.+-+.+|.|.-|
T Consensus 282 -~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 282 -VFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEE--TTEEEEE-STTEEEEE
T ss_pred -EEcC--CCceEEECCCcEEEEe
Confidence 3433 2455556678887665
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.54 E-value=0.056 Score=38.55 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=28.6
Q ss_pred CccEEEEEECCCCCEEEEEECCCEEEEEEee
Q 001367 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 426 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~ 426 (1091)
...|.+++|+|...+||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999983
No 417
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.49 E-value=0.037 Score=39.41 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCc
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK 369 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~ 369 (1091)
.+|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus 12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 3799999999998 8899999999999998 5554
No 418
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.18 E-value=5.2 Score=48.57 Aligned_cols=203 Identities=12% Similarity=0.101 Sum_probs=116.4
Q ss_pred CCCEEEEEeCCeEEEEEccCceeEEEecCCCCC--------eEEEEEcC---------------CCCcEEEEEeCCCeEE
Q 001367 812 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPT--------ATSLAFNP---------------HDNNVIAIGMDDSTIL 868 (1091)
Q Consensus 812 dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~~~~~la~g~~dg~i~ 868 (1091)
++.+.++..++.|.-.|..+|+.+-++...... .+.+++-. .++..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444444788888999999988776532211 12233321 0234777899999999
Q ss_pred EEeccCcceeeeeccccCCeE-------------EEEECC--CCCEEEEEeC----------CCcEEEEEcCCCceeeee
Q 001367 869 IYNARSSEVISKLEGHSKRVT-------------GLVFSD--ALNILVSSGG----------DAQIFVWDVDGWGIQTCR 923 (1091)
Q Consensus 869 iwd~~~~~~~~~l~~h~~~V~-------------~l~~sp--dg~~las~s~----------Dg~i~vwd~~~~~~~~~~ 923 (1091)
-.|..+|+.+..+.. .+.|. .+.-+| .+..++.++. +|.|+-+|.++|+..=..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998866532 22110 111122 1345555542 688999999998753211
Q ss_pred eeecc-------CCCcC--CCCCc-eEEEEcCCCCEEEEE-------------------ecCeEEEEEcCCcceeeeeec
Q 001367 924 SLQTP-------DGVMT--LAPSE-THIQFHKDQTRFLLV-------------------HETHLAIYEAEELTCLKQWFP 974 (1091)
Q Consensus 924 ~~~~~-------~~~~~--~~~~i-~~l~fs~dg~~la~~-------------------~d~~i~vwd~~~~~~~~~~~~ 974 (1091)
....+ .+..- ....+ ...++.++...+... ..+.|.-.|.++|+....+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 11100 00000 00011 234555555444431 124577788999998876654
Q ss_pred CC--------ccCEEEEEEee-CCC---EEEEEEcCCcEEEEeCCCCceEEEe
Q 001367 975 IS--------SVPISQATFSC-DCR---MVFTSFVDGTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 975 ~h--------~~~v~~v~fs~-dg~---~l~t~~~dg~v~iwd~~~~~~~~~~ 1015 (1091)
-| .....-+.+.. +|+ .++.++.+|.+.+.|-.+|+.+...
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 33 11111122333 664 7899999999999999999987654
No 419
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.13 E-value=7.4 Score=43.90 Aligned_cols=122 Identities=17% Similarity=0.294 Sum_probs=76.5
Q ss_pred CCCcEEEEEcCCC----ceEEEEEcCCCcEEEEEcC-----CCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 334 SSSPMSMDFHPVQ----HTLLLVGTNVGDTGLWDVN-----SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 334 ~~~V~~v~fspdg----~~llasg~~dg~i~iWd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
-..|..+.|+|-+ ..|||+- ....|.||.+. +++.+..+.+. +.+..+. --..+.|
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcE---i~e~~pv-----------LpQGCVW 120 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCE---IREPFPV-----------LPQGCVW 120 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeee---ccCCccc-----------CCCcccc
Confidence 3479999999853 3577764 45889999975 34444332222 1111111 1124779
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 473 (1091)
+|....|++-.....-.++++..... +....+ ...+.|.|.+|.+||+++.++.|+ .=.-+|||-.
T Consensus 121 HPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~ 186 (671)
T PF15390_consen 121 HPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSA 186 (671)
T ss_pred cCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCc
Confidence 99999998887766556777765432 222233 345679999999999985555444 4467799843
No 420
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.91 E-value=0.072 Score=51.68 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=67.6
Q ss_pred EEEEE-eCCeEEEEEccCceeE-EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeecccc-CCeEEE
Q 001367 815 YLFSA-SGGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGL 891 (1091)
Q Consensus 815 ~la~~-~dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V~~l 891 (1091)
-+++| ++|.|.+|...-.... ..+..-...|-++.-.-+++.+..+++.||.|+.|++.-++.+...-.|. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 34444 5899999987622211 11111222333333232256689999999999999999988888877787 566666
Q ss_pred EECCCCCEEEEE--eCCCcEEEEEcCC
Q 001367 892 VFSDALNILVSS--GGDAQIFVWDVDG 916 (1091)
Q Consensus 892 ~~spdg~~las~--s~Dg~i~vwd~~~ 916 (1091)
..+..++.++++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 666667777777 7777788887765
No 421
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.87 E-value=5.3 Score=40.89 Aligned_cols=193 Identities=11% Similarity=0.067 Sum_probs=109.0
Q ss_pred cccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCC
Q 001367 733 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 812 (1091)
Q Consensus 733 ~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 812 (1091)
..-...+.|..+|..+-+.+.-|.-.+ +.+++.+|+......++. ..--..+++..|
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~~---~~FgEGit~~~d 100 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLPP---RYFGEGITILGD 100 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-TT---T--EEEEEEETT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECCc---cccceeEEEECC
Confidence 345667888888887777777664332 234455666555555532 333445666555
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccc-----cCC
Q 001367 813 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-----SKR 887 (1091)
Q Consensus 813 g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h-----~~~ 887 (1091)
.-+..+--++...+||..+.+.+.++.- .+.=..++. +++.|+.......++++|..+-+....+.-. -..
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred EEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCC
Confidence 5455555689999999999999988863 345566663 5556666666778999998887665554322 123
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccC-------CCcCCCCCceEEEEcCCCCEEEEE
Q 001367 888 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV 953 (1091)
Q Consensus 888 V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~i~~l~fs~dg~~la~~ 953 (1091)
++-+.+- +|...|=.=....|..-|..+|......-+..+. .......-...+|+.|.+..|.+.
T Consensus 177 LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 177 LNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred cEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 4445554 5655555444555667777777655432222111 111112347899998877766653
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.72 E-value=8.1 Score=43.01 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=79.5
Q ss_pred CCeeEEEecCCCCEEEEEe------------C-CeEEEEEccC--cee--EEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001367 802 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD 864 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~------------d-g~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~d 864 (1091)
.....+++.++|+++++.. . +.|.+++-.. |+. ...+.........+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4567899999999888752 1 3677776442 322 233433344568899998 77 444 4444
Q ss_pred CeEEEEeccCc-----c--ee-eeecc----ccCCeEEEEECCCCCEEEEEeCC-------------------CcEEEEE
Q 001367 865 STILIYNARSS-----E--VI-SKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD 913 (1091)
Q Consensus 865 g~i~iwd~~~~-----~--~~-~~l~~----h~~~V~~l~~spdg~~las~s~D-------------------g~i~vwd 913 (1091)
...++.+.... + .+ ..+.. +......++|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33334344321 1 11 22322 23447789999999887765521 3344445
Q ss_pred cCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 914 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
.++++. ..+ ..+.. ....++|+++|+++++
T Consensus 171 pdg~~~---e~~--a~G~r----np~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKL---RVV--AHGFQ----NPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeE---EEE--ecCcC----CCccceECCCCCEEEE
Confidence 544331 111 12222 3568999999999887
No 423
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.68 E-value=14 Score=44.77 Aligned_cols=115 Identities=11% Similarity=-0.034 Sum_probs=73.4
Q ss_pred EEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCC-ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC--CceEEEeec
Q 001367 941 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASN--LEVQCRILS 1017 (1091)
Q Consensus 941 l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~--~~~~~~~~~ 1017 (1091)
.+..|-..++++|....+++||+...+.++.....+ ...|+++.+- +..+++|...-.|.++.... .+++ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa- 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLI-VFA- 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEE-EEe-
Confidence 456677778889999999999998887776655444 5566666654 56788887766666655444 3333 222
Q ss_pred ccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCCCccc
Q 001367 1018 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV 1068 (1091)
Q Consensus 1018 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~~~~~ 1068 (1091)
....+.. |..+++. |-..++.+..=|.+.+-+++..-.+-+.
T Consensus 1015 dD~~pR~-----Vt~~~~l----D~~tvagaDrfGNi~~vR~P~d~~e~~~ 1056 (1205)
T KOG1898|consen 1015 DDPVPRH-----VTALELL----DYDTVAGADRFGNIAVVRIPPDVSEEAS 1056 (1205)
T ss_pred CCCccce-----eeEEEEe----cCCceeeccccCcEEEEECCCcchhhhc
Confidence 2222222 3322221 4578999999999999988765544433
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.47 E-value=0.96 Score=52.50 Aligned_cols=123 Identities=9% Similarity=0.095 Sum_probs=77.5
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeec-cccCCeEEEEEC--CCCCEEEEEeCCCcEEEEE
Q 001367 837 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 837 ~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~-~h~~~V~~l~~s--pdg~~las~s~Dg~i~vwd 913 (1091)
++......++-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|. |||+.+++.|-.+.|.++.
T Consensus 24 ~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3333444555555555 45555555555699999999876432221 356789999984 7999999999999999986
Q ss_pred cCC----Cceeeeeeeecc--CCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEc
Q 001367 914 VDG----WGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 963 (1091)
Q Consensus 914 ~~~----~~~~~~~~~~~~--~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~ 963 (1091)
-.. ........++.. ..+.+ .+|.+..|.++|.+++ +.++++.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECC
Confidence 431 111111122221 22222 3688999999998654 55677888874
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.39 E-value=1.1 Score=52.01 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=77.0
Q ss_pred CeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec-CCCcceEEEeecccCCceEEEEEecCCeEEEEecC----
Q 001367 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD---- 517 (1091)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---- 517 (1091)
...-+.-|.-++ ..+..+....+.|||...+.....-. ...+.|..+.|...++++.+++.+..+.|.++--.
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444555555555 34444445689999998887544332 35788999999999999999999999999998431
Q ss_pred -CCC----cee--eecC-CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 518 -SLG----ARV--DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 518 -~~~----~~~--~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
... .+. .+.. ..++|....|.++|..++.++. .+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECC
Confidence 111 111 1222 3367889999999988877643 4777774
No 426
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.35 E-value=0.68 Score=49.49 Aligned_cols=158 Identities=9% Similarity=0.084 Sum_probs=97.7
Q ss_pred CCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeE-EEec-CCCC----CeE-EEEEcCCCCcEEEEEeCCCeEEEE-e
Q 001367 800 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-LTIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N 871 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~l~~s~~~~~~la~g~~dg~i~iw-d 871 (1091)
....+..+-..|||+.+..-+..++.++++.+.... +++. ...+ .|+ .+..-. ++.-+.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456778888999999999988899999988754432 1221 1111 122 222233 67777888999988776 5
Q ss_pred ccCc-ce----eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCC
Q 001367 872 ARSS-EV----ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 946 (1091)
Q Consensus 872 ~~~~-~~----~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~d 946 (1091)
+..+ .. ++.+.-...++..+.--.+.+-+++-+..|++.++.....+. ...+... ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~---lL~~~~~------~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL---LLFERAY------QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc---eehhhhh------cCcceeeeCcc
Confidence 4432 21 122221223344333333446678888888888876544221 1111111 14668999999
Q ss_pred CCEEEEEecCeEEEEEcCCcc
Q 001367 947 QTRFLLVHETHLAIYEAEELT 967 (1091)
Q Consensus 947 g~~la~~~d~~i~vwd~~~~~ 967 (1091)
+.+|++-..|.++++.+++..
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred cchheeecCCceEEEEecCCC
Confidence 999999888999999887544
No 427
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.30 E-value=5.9 Score=38.94 Aligned_cols=138 Identities=9% Similarity=0.087 Sum_probs=84.6
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccc-----cccceEEEEEcCCCCEEEE-EeCCCeEEE
Q 001367 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-----QHNSVSVVHFDTAKDQILA-AGDDHVIKI 604 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~l~~-~s~dg~i~i 604 (1091)
....-..+|+|++.+ +.....++ .+....+.+..-+.+|+. ....-+.++|+.+.+.++. -+.+-.|.-
T Consensus 110 R~NDgkvdP~Gryy~-GtMad~~~----~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYG-GTMADFGD----DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred ccccCccCCCCceee-eeeccccc----cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 445566789999944 33211111 111222333222333320 0123456788877766655 556777877
Q ss_pred EE--CCCCeeE-----EEEeCC--CCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeec
Q 001367 605 WD--MNKVQLL-----TTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN 673 (1091)
Q Consensus 605 wd--~~~~~~~-----~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 673 (1091)
|| ..+|... ..+... .....--.++...+|++.++.-..++|...|..+++.+.++......+++++|.
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 77 5555432 222211 011123456677789999999999999999999999999999999999999995
No 428
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.23 E-value=17 Score=44.02 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=65.5
Q ss_pred EEecCCCCEEEEEeCCeEEEEEccCceeEEEecC--CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC-cceeeeecc
Q 001367 807 FALSKNDAYLFSASGGVISLYIVMTFKTILTIMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 883 (1091)
Q Consensus 807 l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~-~~~~~~l~~ 883 (1091)
.|+.|-..++.+|-+..+++||+-..++++.... ....|+.+.+ .+..+++|...-.|.++..+. +..+..+..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 4666777788888899999999988877765432 3456777777 456788887666666554433 233333332
Q ss_pred --ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 884 --HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 884 --h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
-...|+++.+-. -..+|.+..=|.+.+-.+.
T Consensus 1016 D~~pR~Vt~~~~lD-~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELLD-YDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCccceeeEEEEec-CCceeeccccCcEEEEECC
Confidence 123466666653 3456656655666555544
No 429
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.96 E-value=7.4 Score=39.35 Aligned_cols=197 Identities=12% Similarity=0.118 Sum_probs=129.0
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001367 844 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 923 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~ 923 (1091)
.-..++-+| ||..-.++...|.|--.|..+|+....--+....-..|..-|||...++-+.. .|.-.|-++.+...
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-- 138 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-- 138 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence 345677888 88888888888888888888888766555555566778889999877764433 45555666655332
Q ss_pred eeeccCCCcCCCCCceEEEEcCCCCEEEEEecC----------eEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEE
Q 001367 924 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 993 (1091)
Q Consensus 924 ~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~----------~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~ 993 (1091)
+.....+.. .......|.+.|.+-.++..| .|++|+.. ....-..|+..|||..-+
T Consensus 139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------CCCCCcceEECCCCcEEE
Confidence 333333332 457889999999998885432 35566543 234456788999999888
Q ss_pred EEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCCCcccC
Q 001367 994 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1069 (1091)
Q Consensus 994 t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~~~~~~ 1069 (1091)
+.-.+..|...|..++... .+.....+..+ +..+-.+|. +..-++....+.++-+|.+... |.+=
T Consensus 205 aslagnaiaridp~~~~ae-v~p~P~~~~~g-------sRriwsdpi-g~~wittwg~g~l~rfdPs~~s--W~ey 269 (353)
T COG4257 205 ASLAGNAIARIDPFAGHAE-VVPQPNALKAG-------SRRIWSDPI-GRAWITTWGTGSLHRFDPSVTS--WIEY 269 (353)
T ss_pred EeccccceEEcccccCCcc-eecCCCccccc-------ccccccCcc-CcEEEeccCCceeeEeCccccc--ceee
Confidence 8777778888887777322 22222222222 112334564 7788888888888888886654 6543
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.94 E-value=1.2 Score=53.49 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=62.9
Q ss_pred ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC----------C--ceEEEeeccc-ccCCCCcccccceeEEEeCCC--C
Q 001367 977 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------L--EVQCRILSTA-YLRPTTSCLHVYPHAIAAHPL--K 1041 (1091)
Q Consensus 977 ~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~----------~--~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~--d 1041 (1091)
.-.|..|.++++|++|+..|..| |.|-.++. | ...|+..+.. .+-. .+..+....+.|||. .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~--~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT--SNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc--CCCCceEEEEEEcCCCCC
Confidence 45788999999999999888765 55555542 1 2344433221 1111 123345567899995 3
Q ss_pred CCeEEEEecCCcEEEEecCCCCCCcccCC
Q 001367 1042 PTQFAVGLTNGEVYVIEPNEPGDTWAVLP 1070 (1091)
Q Consensus 1042 ~~~l~~g~~dg~v~~w~~~~~~~~~~~~~ 1070 (1091)
+..|++=..|+++++||+.+....|++.+
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 57899999999999999998888888776
No 431
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.91 E-value=5.5 Score=44.31 Aligned_cols=147 Identities=12% Similarity=0.176 Sum_probs=88.6
Q ss_pred CeeEEEecCCCCEEEEEeCCeEE-EEEccCcee--EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc---
Q 001367 803 AVPCFALSKNDAYLFSASGGVIS-LYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--- 876 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~dg~i~-iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~--- 876 (1091)
....+..++||.+++.+..|.+. -||- |.. ...-......++.+.+.+ ++.+++++ .+|.+.. ....++
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~~ 314 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTEE 314 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCccc
Confidence 35566788999999999877643 3432 222 111122345789999998 77777655 5666543 344443
Q ss_pred --eeeeecc--ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 877 --VISKLEG--HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 877 --~~~~l~~--h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
....... -...++++.|.+++..++ ++..|.+.... +.++ ..+........+.....+.|.++++.+++
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~-----tW~~~~~~~~~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGK-----SWKRDKGADNIAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCc-----ceeEccccCCCCcceeEEEEcCCCceEEE
Confidence 1222221 123589999998877655 56778666654 3322 11111111111235789999999999999
Q ss_pred EecCeEEEE
Q 001367 953 VHETHLAIY 961 (1091)
Q Consensus 953 ~~d~~i~vw 961 (1091)
+.+|.|.-|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
Confidence 999987665
No 432
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.73 E-value=0.14 Score=59.32 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=83.5
Q ss_pred ecccCCCCcEEEEEc----CCCceEEEEEcCCCcEEEEEcC--CCCceeeeceeEEeccccccceeeeeecCCCccEEEE
Q 001367 329 TLIEGSSSPMSMDFH----PVQHTLLLVGTNVGDTGLWDVN--SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fs----pdg~~llasg~~dg~i~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 402 (1091)
.++|..++|-.++|- |.+. . .-|...||++. .|+......+. +...-...+.-+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~-~-----~vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR-R-----LVGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLV 186 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH-H-----HhhhhheeehHhhccccccceEEe--------------ecCcCCCCccee
Confidence 345777788888883 4443 1 22778899875 45444322221 122233445556
Q ss_pred EECC---CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEE-----------cCCCCceEEEEeeCCCcEE
Q 001367 403 VWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-----------SAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 403 ~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~-----------s~d~~~~~l~s~~~d~~i~ 468 (1091)
.|.| +..++..+-.+++|++..+.+... . .+.+|...+..++| ||||+ .++.+..||.++
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVG 260 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccc
Confidence 6665 667777777788888877765432 1 24568777766654 89999 899999999888
Q ss_pred EEeCC-----CCceeEEecCCC
Q 001367 469 VWDAV-----TGSRTYSFEGHG 485 (1091)
Q Consensus 469 iwd~~-----~~~~~~~~~~~~ 485 (1091)
.|.+- .-+|++.++.|+
T Consensus 261 f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCC
Confidence 88653 335667777777
No 433
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.71 E-value=0.19 Score=48.88 Aligned_cols=101 Identities=18% Similarity=0.170 Sum_probs=57.1
Q ss_pred EEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE-EEEECCCCCEEEEEECCCEEEEEEeeCC
Q 001367 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGVAYSKHIVQLYAYHGG 428 (1091)
Q Consensus 350 lasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~las~~~d~~i~iwd~~~~ 428 (1091)
+++|+.+|.|.+|+...-...... ...-...|. -+.--.++.+..+++.+|.|+.|++.-+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~------------------~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDR------------------VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred EEeecccceEEEecCCccchHHHh------------------hhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 588999999999998622111100 111112232 2333346668888999999999999877
Q ss_pred cccceeEEEeccc-cCeeEEEEcCCCCceEEEEe--eCCCcEEEEeCC
Q 001367 429 SDARQQLEIDAHV-GNVNDLAFSAPCKQISVITC--GDDKTIKVWDAV 473 (1091)
Q Consensus 429 ~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~--~~d~~i~iwd~~ 473 (1091)
+.+. ....|. .++.....+..++ .++.+ |.|..++.|++.
T Consensus 135 k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 135 KVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcchh
Confidence 5443 233455 3444444444444 33333 455555555544
No 434
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=5.4 Score=46.21 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=97.2
Q ss_pred eEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee--e--ccccCCeEEEEECCCCC
Q 001367 823 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALN 898 (1091)
Q Consensus 823 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~--l--~~h~~~V~~l~~spdg~ 898 (1091)
.|+||++. |..+.++.-..+.+..+.|+. +. -|++...+|++++|++.. +.+.. . +.....|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 37888754 666655544445888999996 55 555678999999999863 33222 1 22334466666666664
Q ss_pred EEEEEeCCCcEE-EEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEE--EEEec--CeEEEEEcCCcce-eeee
Q 001367 899 ILVSSGGDAQIF-VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF--LLVHE--THLAIYEAEELTC-LKQW 972 (1091)
Q Consensus 899 ~las~s~Dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~l--a~~~d--~~i~vwd~~~~~~-~~~~ 972 (1091)
.+.+ .+|.+. +-+.+... ...+....+... .-.+-+.-+++... ...-+ --..++..+.+.. ...+
T Consensus 141 avlt--~~g~v~~i~~~~~~~---~~~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEPK---LRKMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEe--cCCcEEEEcCCCcch---hhhCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 4444 344443 33333211 111111111111 11233333332211 11111 0111222221111 1111
Q ss_pred ecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 973 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 973 ~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
..+ ...+..+..||++++|+--..+|.|.+-+.+..+..|.+.
T Consensus 213 ~~~-~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 213 SWP-NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCC-CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 111 4578889999999999999999999999998888877766
No 435
>PHA03098 kelch-like protein; Provisional
Probab=93.51 E-value=3.5 Score=48.92 Aligned_cols=153 Identities=8% Similarity=-0.024 Sum_probs=72.4
Q ss_pred CceEEEEEecC-----CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC--CceEEEEEecCCceeeEE
Q 001367 498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 498 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~ 570 (1091)
++.+.+.|+.+ ..+..||..+..-......+.......+..-+++..+.||.... .-..+..||..+.+....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 45667777765 24667776654322111111111111112235666666653221 125688899887654332
Q ss_pred EecccccccceEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 571 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 571 ~~~~~~~~~~v~~v~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
-.... ..... +++ ..++..++.|+.+ ..+.+||..+.+....-...........+. -+++.++.|+.
T Consensus 422 ~~~p~-~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCC
Confidence 21111 01111 222 2245555556532 238889988776544322211111112222 26777777765
Q ss_pred C-----CeEEEEECCCCC
Q 001367 643 E-----NRIKILETPESN 655 (1091)
Q Consensus 643 d-----g~i~iwd~~~~~ 655 (1091)
+ +.+.+||..+..
T Consensus 497 ~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcccceeEEEeCCCCE
Confidence 4 467888877663
No 436
>PHA03098 kelch-like protein; Provisional
Probab=93.41 E-value=2.4 Score=50.22 Aligned_cols=188 Identities=11% Similarity=0.027 Sum_probs=93.8
Q ss_pred CCCCEEEEEe-C------CeEEEEEccCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEeccCcc
Q 001367 811 KNDAYLFSAS-G------GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSE 876 (1091)
Q Consensus 811 ~dg~~la~~~-d------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~i~iwd~~~~~ 876 (1091)
.++..++.|+ + ..+..||..+.+-... +..+......+++ ++++.+.|+.+ ..+..||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3555555554 2 2477888776554322 1111112222222 67788888865 357788887754
Q ss_pred ee--eeeccccCCeEEEEECCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCC
Q 001367 877 VI--SKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 948 (1091)
Q Consensus 877 ~~--~~l~~h~~~V~~l~~spdg~~las~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~ 948 (1091)
-. ..+........ ++ .-+++..+.||.+ ..+..||..+++......+ +... ....+...+++
T Consensus 370 W~~~~~lp~~r~~~~-~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~r------~~~~~~~~~~~ 439 (534)
T PHA03098 370 WREEPPLIFPRYNPC-VV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PISH------YGGCAIYHDGK 439 (534)
T ss_pred eeeCCCcCcCCccce-EE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--Cccc------cCceEEEECCE
Confidence 32 22221111111 12 2366777777732 3578899887553321111 1111 11122334566
Q ss_pred EEEEEe-c--------CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceE
Q 001367 949 RFLLVH-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 1012 (1091)
Q Consensus 949 ~la~~~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~ 1012 (1091)
..+.|. + ..+.+||..+.+....-...... ...-....+++.++.|+.+ ..|.+||..+....
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 655542 1 23889998877654321111111 1111122367777777654 46788888776543
No 437
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.20 E-value=3.8 Score=40.21 Aligned_cols=157 Identities=11% Similarity=0.122 Sum_probs=85.3
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe----cC---eEEEE
Q 001367 889 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ET---HLAIY 961 (1091)
Q Consensus 889 ~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~----d~---~i~vw 961 (1091)
..++-++. ..|..+.....|.+|++...++.....+.+. +.|..+.++..|++|++-. .. .+++|
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 33444442 3443345667799999996554443334433 2588999999999999931 22 46665
Q ss_pred ---EcC--CcceeeeeecCC---------------------ccCEEEEEEee-CCCEEEEEEcCCcEEEEeCCCCce-EE
Q 001367 962 ---EAE--ELTCLKQWFPIS---------------------SVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEV-QC 1013 (1091)
Q Consensus 962 ---d~~--~~~~~~~~~~~h---------------------~~~v~~v~fs~-dg~~l~t~~~dg~v~iwd~~~~~~-~~ 1013 (1091)
+.. ....++....|| ..++.+++-.| .|+ |++|+ ++++.+|.+..... ..
T Consensus 93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~~~~ 170 (215)
T PF14761_consen 93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTIQSE 170 (215)
T ss_pred EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEEecc
Confidence 222 122222222232 34556667666 455 44454 55899998776544 22
Q ss_pred EeecccccCCC-CcccccceeEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 1014 RILSTAYLRPT-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1014 ~~~~~~~~~~~-~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
++....+...- .|...+.+..+++. +.++|.. .+-.++++.+
T Consensus 171 ~~~~lDFe~~l~~~~~~~~p~~v~ic---~~yiA~~-s~~ev~Vlkl 213 (215)
T PF14761_consen 171 KFSFLDFERSLIDHIDNFKPTQVAIC---EGYIAVM-SDLEVLVLKL 213 (215)
T ss_pred cccEEechhhhhheecCceEEEEEEE---eeEEEEe-cCCEEEEEEE
Confidence 11111111110 12344556566665 3555554 4667777765
No 438
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.91 E-value=31 Score=42.75 Aligned_cols=174 Identities=15% Similarity=0.149 Sum_probs=97.6
Q ss_pred CCCCeeEEEec---C----CCCEEEEEeCCeEEEEEccCc---------------eeEEEecC---CCCCeEEEEEcCCC
Q 001367 800 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD 854 (1091)
Q Consensus 800 ~~~~v~~l~~s---~----dg~~la~~~dg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~~ 854 (1091)
...+|..|+|+ . ..++|++-....+.|+...-. .++.++.. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 45688888887 2 235777777777777762211 11222221 12244566777666
Q ss_pred CcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCC
Q 001367 855 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 934 (1091)
Q Consensus 855 ~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 934 (1091)
.+.||+.+..|...||++..+... +. .... +.....|.| +.|... +
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~~~----------~~~~~~gsi-~~d~~e--------------~--- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKR-----KS-SNLR----------LSRNISGSI-IFDPEE--------------L--- 203 (765)
T ss_pred cceEEEEeccCcEEEEEecccccc-----CC-ccee----------eccCCCccc-cCCCcc--------------c---
Confidence 667777777777777776211100 00 0111 111112222 122111 0
Q ss_pred CCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceee-eeecCCccCEEEEEEeeCCC-EEEEEEcCCcEEEEeCCCC
Q 001367 935 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 935 ~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~v~fs~dg~-~l~t~~~dg~v~iwd~~~~ 1009 (1091)
..-..+.|.++-..|+++....+.++|+.+..... .........|..+.-+++.. +++.- ....|...++...
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 12457889999999999999999999999876633 22233467888888888732 22222 2356877787774
No 439
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.75 E-value=2.8 Score=46.69 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=82.3
Q ss_pred CCeEEEEEcCCCCcEEEEEe-----------CCC-eEEEEeccC--cc--eeeeeccccCCeEEEEECCCCCEEEEEeCC
Q 001367 843 PTATSLAFNPHDNNVIAIGM-----------DDS-TILIYNARS--SE--VISKLEGHSKRVTGLVFSDALNILVSSGGD 906 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~-----------~dg-~i~iwd~~~--~~--~~~~l~~h~~~V~~l~~spdg~~las~s~D 906 (1091)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.++| +++ ++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4567889998 787776542 223 777776543 33 223443334456889999998 555 3444
Q ss_pred CcEEEEEcCCCc-e--eeeeeeeccCCC-cCCCCCceEEEEcCCCCEEEE-Eec-------------------CeEEEEE
Q 001367 907 AQIFVWDVDGWG-I--QTCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLL-VHE-------------------THLAIYE 962 (1091)
Q Consensus 907 g~i~vwd~~~~~-~--~~~~~~~~~~~~-~~~~~~i~~l~fs~dg~~la~-~~d-------------------~~i~vwd 962 (1091)
...++.|.+... . .....+..+... .........++|.|||.+.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 433343543321 1 111223323221 000124678999999988776 421 3455556
Q ss_pred cCCcceeeeeecCCccCEEEEEEeeCCCEEEEEE
Q 001367 963 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 963 ~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
..+++. ..+..+ -.....++|+++|+++++-.
T Consensus 171 pdg~~~-e~~a~G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKL-RVVAHG-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeE-EEEecC-cCCCccceECCCCCEEEEcc
Confidence 554432 233333 34567899999999877644
No 440
>PRK13684 Ycf48-like protein; Provisional
Probab=92.75 E-value=18 Score=39.61 Aligned_cols=153 Identities=18% Similarity=0.152 Sum_probs=92.3
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceee
Q 001367 801 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 879 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~ 879 (1091)
...+..+.+.|++.+++++..|.+..-.-..++.-.. .......++++++.+ +++.+++| ..|.+++=..+.|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccc
Confidence 4567889999999998888888655321111221111 223446789999999 77777655 46766543344443222
Q ss_pred eecc----ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEec
Q 001367 880 KLEG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 955 (1091)
Q Consensus 880 ~l~~----h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d 955 (1091)
.... -...+.++++.++++.++ ++.+|.|. ...+.++. ...+....+.. .....+.|..+++.++++..
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~t--W~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKT--WEKDPVGEEVP---SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCC--CeECCcCCCCC---cceEEEEEeCCCceEEECCC
Confidence 1111 123578899999887665 55677554 44444331 11111111211 25778888889999999999
Q ss_pred CeEEEEE
Q 001367 956 THLAIYE 962 (1091)
Q Consensus 956 ~~i~vwd 962 (1091)
|.|..|+
T Consensus 323 G~il~~~ 329 (334)
T PRK13684 323 GVLLRYV 329 (334)
T ss_pred ceEEEec
Confidence 9988776
No 441
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.66 E-value=29 Score=41.94 Aligned_cols=94 Identities=9% Similarity=-0.005 Sum_probs=54.6
Q ss_pred CCCCeeEEEecCCCCEEEEEeCCeEEEEEccC-ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCccee
Q 001367 800 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 878 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~ 878 (1091)
....|..+.++|+|+++|..+...|.|..+.. +.....+.+....|. .+.+.+... .
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~--------------------Crt~~v~~~--~ 140 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEIN--------------------CRTVPVDER--F 140 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCccee--------------------EEEEEechh--h
Confidence 45688999999999999998876666665532 110111111111111 112222110 0
Q ss_pred eeeccccCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCC
Q 001367 879 SKLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spd---g~~las~s~Dg~i~vwd~~~ 916 (1091)
. ...+...|..+.|+|. +..|+.-..|+++++||+..
T Consensus 141 ~-~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 141 F-TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred c-cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 0 1123456777888875 47788888888888888865
No 442
>PHA02790 Kelch-like protein; Provisional
Probab=92.49 E-value=5.1 Score=46.44 Aligned_cols=184 Identities=11% Similarity=-0.009 Sum_probs=91.9
Q ss_pred CCCEEEEEe-C-----CeEEEEEccCceeEE--EecCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeccCcce--ee
Q 001367 812 NDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEV--IS 879 (1091)
Q Consensus 812 dg~~la~~~-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~la~g~~dg--~i~iwd~~~~~~--~~ 879 (1091)
++..+++|+ + ..+..||..+.+-.. .+.........++ - ++.+.++|+.++ .+..||..+++- +.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 445555554 2 347778877654322 2221111222222 3 677888888643 678888766532 22
Q ss_pred eeccccCCeEEEEECCCCCEEEEEeCCC---cEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecC
Q 001367 880 KLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 956 (1091)
Q Consensus 880 ~l~~h~~~V~~l~~spdg~~las~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~ 956 (1091)
.+.........+ .-+|+..+.||.++ .+..||..+..-.....+.... -...+..-+|+..+.| |
T Consensus 348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--C
Confidence 332111112222 23678888887654 4678888775533211111111 1112224456666655 4
Q ss_pred eEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCce
Q 001367 957 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1011 (1091)
Q Consensus 957 ~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~ 1011 (1091)
.+.+||..+.+....-...+. +...-+..-+|+..+.||.+ .+|..||..+++.
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~-r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYP-RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCC-ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 577899887765432111111 11112223467777777754 2455666655543
No 443
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=7.1 Score=37.74 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=61.4
Q ss_pred CCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeE--EEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccC
Q 001367 812 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTAT--SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 886 (1091)
Q Consensus 812 dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~--~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~ 886 (1091)
+|.++.+.+ ...|++||+.+|+.+..-.-....+. .+.-. +..+.+-.-.+|....+|.++.+++..+. ..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 556666655 36799999999988766543322221 11111 23344445578899999999988877665 334
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001367 887 RVTGLVFSDALNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 887 ~V~~l~~spdg~~las~s~Dg~i~vwd~~~ 916 (1091)
.-+.++ .|++-|+.++...+++.-|-++
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHH
Confidence 445554 3555666666566676666655
No 444
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.91 E-value=20 Score=38.18 Aligned_cols=188 Identities=10% Similarity=0.054 Sum_probs=102.4
Q ss_pred eeEEEecCCCCEEEEEe-----C--------CeEEEEEccCceeEEEecCC------CCCeEEEEEcCCCC----cEEEE
Q 001367 804 VPCFALSKNDAYLFSAS-----G--------GVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAI 860 (1091)
Q Consensus 804 v~~l~~s~dg~~la~~~-----d--------g~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~----~~la~ 860 (1091)
|..+.+.+++++-+.-. . -+|.+||+.+.+.++++.-+ ......+++...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 45566666666555422 1 26889999999988876533 34567777765222 23333
Q ss_pred Ee-CCCeEEEEeccCcceeeeeccc-------------------cCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCC
Q 001367 861 GM-DDSTILIYNARSSEVISKLEGH-------------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGW 917 (1091)
Q Consensus 861 g~-~dg~i~iwd~~~~~~~~~l~~h-------------------~~~V~~l~~sp---dg~~las~s~Dg~i~vwd~~~~ 917 (1091)
.. ..+-|.++|+.+++.-+.+..+ .+.+..++.+| ||++|.-..-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 33 3458999999988754444322 13366677765 666766555443 345554432
Q ss_pred ceeee-----e----eeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcc---eeeeee-cCC-ccCEEE
Q 001367 918 GIQTC-----R----SLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWF-PIS-SVPISQ 982 (1091)
Q Consensus 918 ~~~~~-----~----~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~---~~~~~~-~~h-~~~v~~ 982 (1091)
..... . .++.+ |... .....++++++|.+..+ ...+.|..|+..+.- ....+. ... -..+..
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 11110 0 01111 0000 13457899999998888 577899999987621 111111 222 346788
Q ss_pred EEEee--CCCEEEEE
Q 001367 983 ATFSC--DCRMVFTS 995 (1091)
Q Consensus 983 v~fs~--dg~~l~t~ 995 (1091)
+.+.+ +|.+.+.+
T Consensus 239 ~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEE-T--TS-EEEEE
T ss_pred eeeccccCceEEEEE
Confidence 88888 77766654
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.52 E-value=6.1 Score=42.76 Aligned_cols=142 Identities=8% Similarity=0.040 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeccCc--c-eeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001367 845 ATSLAFNPHDNNVIAIGMDDSTILIYNARSS--E-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 921 (1091)
Q Consensus 845 i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~--~-~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~ 921 (1091)
.+.+-|.. .++.|+ +...|.+.=|-+... . ++..-....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 35566654 333333 333444555544321 1 222222356799999999999999999999999999985533211
Q ss_pred eeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEE
Q 001367 922 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 993 (1091)
Q Consensus 922 ~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~ 993 (1091)
. ........ ...|....|+.. .-+|.-.+..+.+|.....+.-......|...|.-..|.++.+.++
T Consensus 103 ~-~~~~ck~k---~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 103 E-YTQECKTK---NANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred H-HHHHhccC---cceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 1 11111111 124788888877 6677666777777776554433333456777888888888877544
No 446
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.33 E-value=16 Score=45.58 Aligned_cols=151 Identities=18% Similarity=0.186 Sum_probs=95.3
Q ss_pred eCCCeEEEEeccCcceeeeeccccCCeEEEEE--------CCCCCEEEEEeCCCcEEEEEcCCCceeeeeee-eccCCCc
Q 001367 862 MDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCRSL-QTPDGVM 932 (1091)
Q Consensus 862 ~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~--------spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~ 932 (1091)
+-|+.+.+|+.+++.....+.+-...|..+.. -|.=++|...+.--.|.++-+.-.+....... ...-...
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45788999999998777777777777777654 23334555555555577776543332111110 0000000
Q ss_pred CCCCCceEEEEcCCCCEEEEEecCeEE--EEEcCCcc----e----------------eeeeecCCccCEEEEEEeeCCC
Q 001367 933 TLAPSETHIQFHKDQTRFLLVHETHLA--IYEAEELT----C----------------LKQWFPISSVPISQATFSCDCR 990 (1091)
Q Consensus 933 ~~~~~i~~l~fs~dg~~la~~~d~~i~--vwd~~~~~----~----------------~~~~~~~h~~~v~~v~fs~dg~ 990 (1091)
.....|.++....+|+.+.+|.||.|+ +|....|- | +.++...+..+|..++......
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 111358899999999999999998544 33333221 1 0111224567899999988888
Q ss_pred EEEEEEcCCcEEEEeCCC-CceE
Q 001367 991 MVFTSFVDGTLSIHEASN-LEVQ 1012 (1091)
Q Consensus 991 ~l~t~~~dg~v~iwd~~~-~~~~ 1012 (1091)
.+.+-++.|+|++|++.. |...
T Consensus 256 IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred eeeeeccCceEEEEEccCCCccc
Confidence 899999999999999987 4433
No 447
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.32 E-value=0.25 Score=57.22 Aligned_cols=178 Identities=16% Similarity=0.164 Sum_probs=98.9
Q ss_pred CeEEEEEcc--CceeEEEe-----cCCCCC---eEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEE
Q 001367 822 GVISLYIVM--TFKTILTI-----MPPSPT---ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 891 (1091)
Q Consensus 822 g~i~iwd~~--~~~~~~~~-----~~~~~~---i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l 891 (1091)
|.+.+||+. .|+....+ ...... |..+-|-+ +..++..+..++.|++....+... ..+.+|...++.+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 677888875 34433222 112223 33333444 556777888889998887765433 4556687766665
Q ss_pred E-----------ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC-------C--EEE
Q 001367 892 V-----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-------T--RFL 951 (1091)
Q Consensus 892 ~-----------~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg-------~--~la 951 (1091)
+ .||||+.+|.++.||.++.|.+.-......+++..-+.|.. .+-.|.-|...- . +++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEE
Confidence 4 58999999999999999999875433233344444444432 122222243322 2 233
Q ss_pred EEec--CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCC------------EEEEEEcCCcEEEEeCC
Q 001367 952 LVHE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR------------MVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 952 ~~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~------------~l~t~~~dg~v~iwd~~ 1007 (1091)
++.| ..+++|.....+|+..+. ...|..+. -+||. .+++-+-|+.|.+|.-.
T Consensus 309 tttd~nre~k~w~~a~w~Cll~~~---~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCLLDKL---IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred ecccCCcceeEeeccchhhhhhhc---ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 3433 468888877777763322 12333333 22332 13345567788888533
No 448
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.18 E-value=6.2 Score=46.55 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=91.4
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEE
Q 001367 813 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 892 (1091)
Q Consensus 813 g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~ 892 (1091)
..+++++..+.|.||+........ ...++..+...| .. +...|+.+..|. ..|. |+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence 788889999999999976432211 001111222222 11 122333332222 1121 33332
Q ss_pred EC--CCCCEEEEEeCCCcEEEEEcCCCc-----e----e--eeeeeeccCCCcCCCCCceEEEEc--CCCCEEEEEecC-
Q 001367 893 FS--DALNILVSSGGDAQIFVWDVDGWG-----I----Q--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET- 956 (1091)
Q Consensus 893 ~s--pdg~~las~s~Dg~i~vwd~~~~~-----~----~--~~~~~~~~~~~~~~~~~i~~l~fs--~dg~~la~~~d~- 956 (1091)
.. -+...|+.+.+||.|.+|.+++-. . . ..+..-.+.-+.......+.+++. ...++||+++++
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 234567777788888888653200 0 0 000000001111111357889998 888899987654
Q ss_pred eEEEEEcCC--cceeeeeecCCccCEEEEEEeeCC---C---EEEEEEcCCcEEEEeC
Q 001367 957 HLAIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 957 ~i~vwd~~~--~~~~~~~~~~h~~~v~~v~fs~dg---~---~l~t~~~dg~v~iwd~ 1006 (1091)
.|.||-... .+....-...|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 455554332 222221122357789999998754 2 7888899999999887
No 449
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=20 Score=41.89 Aligned_cols=163 Identities=11% Similarity=0.131 Sum_probs=78.6
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEeeCCccccee-EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE-eCCCC
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW-DAVTG 475 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw-d~~~~ 475 (1091)
.+..+.|+.+..+| +...+|+++||++-... .... .-.......|..+.|..+|- .+.+. +|.+.+- +.+.
T Consensus 85 ~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~- 157 (829)
T KOG2280|consen 85 ELIGMGWSDDEELI-CVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEE- 157 (829)
T ss_pred CeeeecccCCceEE-EEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCc-
Confidence 88899999776555 55699999999987532 2110 00112233466666666553 33333 3444433 3222
Q ss_pred ceeEEecC-CCcceEEEeecccCC---ceEEEEEe-cCCeEEEEecCCC-CceeeecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 476 SRTYSFEG-HGAPVYSLCPHAKEN---IHFIFSIS-VDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 476 ~~~~~~~~-~~~~v~~~~~~~~~~---~~~l~s~~-~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
..++++.. ........+|....+ ...++-.. ..+ ..++-.+.. .....+......+..+..||+.++|+.-..
T Consensus 158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~ 236 (829)
T KOG2280|consen 158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE 236 (829)
T ss_pred chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec
Confidence 12223221 111111112211111 11111111 000 011111111 112223333457888999999999988765
Q ss_pred CCCCceEEEEEecCCceeeEEEe
Q 001367 550 SKEGESFLVEWNESEGAIKRTYQ 572 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~ 572 (1091)
.|.|.+-+....+....+.
T Consensus 237 ----~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 237 ----TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ----CCcEEEEecchhhhhhccC
Confidence 5557777776666555554
No 450
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.12 E-value=13 Score=36.73 Aligned_cols=146 Identities=12% Similarity=0.141 Sum_probs=85.3
Q ss_pred cEEEEEeCCCeEEEEeccC--cceeeeeccccCCeEEEEECCCCCEEEEEeCCC------cEEE---EEcCCCceeeeee
Q 001367 856 NVIAIGMDDSTILIYNARS--SEVISKLEGHSKRVTGLVFSDALNILVSSGGDA------QIFV---WDVDGWGIQTCRS 924 (1091)
Q Consensus 856 ~~la~g~~dg~i~iwd~~~--~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg------~i~v---wd~~~~~~~~~~~ 924 (1091)
..|..+...+.|.+|++.+ .+.+.++..- +.|..++++..|++|+|--.+. .+|+ |+....+... ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~-v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP-VR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc-EE
Confidence 4555556677899999983 3556666643 7899999999999999864322 4555 3433111000 00
Q ss_pred eeccCCCc------------------CCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcce-ee-----ee----ecCC
Q 001367 925 LQTPDGVM------------------TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC-LK-----QW----FPIS 976 (1091)
Q Consensus 925 ~~~~~~~~------------------~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~-~~-----~~----~~~h 976 (1091)
. ..-||. +.+..+.+++.-|-..-|++|.++.+.+|.+..... .. .+ ..-|
T Consensus 107 v-RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 107 V-RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred E-EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 0 001100 011356788888877778888899999998764433 11 11 1111
Q ss_pred -ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 977 -SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 977 -~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
+-....++|. +.|+|..+ +-.+++..+.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 2334556655 45777664 4567777653
No 451
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.07 E-value=0.12 Score=55.69 Aligned_cols=241 Identities=16% Similarity=0.126 Sum_probs=139.0
Q ss_pred EEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEE
Q 001367 738 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 817 (1091)
Q Consensus 738 ~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la 817 (1091)
...|-+.+..++.++.+..+..||-.... .... ........+++..+|..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-----------------------~le~-----n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-----------------------ILEL-----NPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce-----------------------eccc-----CCchhHhhhhhccccchhh
Confidence 45566777778888888777777732211 1111 1334455677777777666
Q ss_pred EEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECC
Q 001367 818 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 895 (1091)
Q Consensus 818 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~sp 895 (1091)
... .+.+.+||+.+....+.-.+....-.-+.|++ +...++.|...|.+.||+..+.+.+...-.|..+++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 654 58899999976433221111222222378999 899999999999999999988777666666999999999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCC---ceEEEEcCCCCEEEEEecCeEEEE----EcCCcce
Q 001367 896 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS---ETHIQFHKDQTRFLLVHETHLAIY----EAEELTC 968 (1091)
Q Consensus 896 dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---i~~l~fs~dg~~la~~~d~~i~vw----d~~~~~~ 968 (1091)
.+ +.+.++.|..+.+-...+..... ....+... ... ...=.|..-|..+...-.+.+.+. .-..+..
T Consensus 170 Ed-~vil~dcd~~L~v~~qegeta~l----tevggepd-nm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pv 243 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVTTQEGETASL----TEVGGEPD-NMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPV 243 (615)
T ss_pred cc-eeeecCcHHHHHHhhhccceeee----eeccCccc-hhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCcc
Confidence 75 55667777766554444322111 11111111 000 111123334444444322222211 1111111
Q ss_pred eeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEe
Q 001367 969 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 969 ~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~ 1015 (1091)
-.+ +....+.+.++.|--||..+. +..-|.|..-.+.++++...+
T Consensus 244 al~-fq~~~gni~cyrwylDg~i~i-gf~ag~iV~iS~h~aeLgaef 288 (615)
T KOG2247|consen 244 ALQ-FQEKYGNIHCYRWYLDGYILI-GFDAGYIVSISAHNAELGAEF 288 (615)
T ss_pred ceE-eeecCCceeEEEEeccccccc-cccceeEEEEeccchHHHHHH
Confidence 112 222366788888888886443 656677777777777765443
No 452
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.06 E-value=30 Score=38.66 Aligned_cols=197 Identities=16% Similarity=0.131 Sum_probs=101.7
Q ss_pred EEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc-ceEEE
Q 001367 413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-PVYSL 491 (1091)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~ 491 (1091)
++..+|.|.-.|..++..+-..... +....+..-.+..+|+ ++.++.++.+...|..+|+.+........ .+..-
T Consensus 73 ~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 73 VGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred EecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 3356666776777766532211111 1011222233333776 77788899999999889999888765551 11111
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC---CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
.+ ..+ ..+...+.++.+...|..++.......... ..+..-....++. ++.+..+ . ++.+.-.|..+|...
T Consensus 149 ~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~~~G~~~ 222 (370)
T COG1520 149 PV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNAEDGTLK 222 (370)
T ss_pred cE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEccCCcEe
Confidence 11 112 244444467887777777777666543322 1111111122333 3333221 1 335777777777766
Q ss_pred EEEecccccc-cceEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001367 569 RTYQGLQLQH-NSVSVVHFDT-----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 569 ~~~~~~~~~~-~~v~~v~~~~-----~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 619 (1091)
-......... ..+....... .+..++.++.++.+...|..+++.+-.....
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 5533221000 0110000000 1223456777888999999999998887754
No 453
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.89 E-value=22 Score=36.94 Aligned_cols=207 Identities=13% Similarity=0.096 Sum_probs=116.8
Q ss_pred CeeEEEecCCCCEEEEEe-CCeEEEEEcc------Cc-eeEEEecC-----CCCCeEEEEEcCCCCcE------------
Q 001367 803 AVPCFALSKNDAYLFSAS-GGVISLYIVM------TF-KTILTIMP-----PSPTATSLAFNPHDNNV------------ 857 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~-dg~i~iwd~~------~~-~~~~~~~~-----~~~~i~~l~~s~~~~~~------------ 857 (1091)
....++++|.+.+.++.. .+...+||.. .. ..+-++.. .....+.+.|+. ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 456899999998777765 4889999986 11 22333332 223567788775 2222
Q ss_pred EEEEeCCCeEEEEeccCcce-----eeeec-cccCCeE-EEEECCC--CCEEE-EEeCCCcEEEEEcCCCceeeeeeee-
Q 001367 858 IAIGMDDSTILIYNARSSEV-----ISKLE-GHSKRVT-GLVFSDA--LNILV-SSGGDAQIFVWDVDGWGIQTCRSLQ- 926 (1091)
Q Consensus 858 la~g~~dg~i~iwd~~~~~~-----~~~l~-~h~~~V~-~l~~spd--g~~la-s~s~Dg~i~vwd~~~~~~~~~~~~~- 926 (1091)
++.+++||+|.=|...-+.. ...+. ...+.|+ .+++... +.+|. +--..++|.|+|-.-......-...
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 45678999999998543222 11222 1123343 4555432 44444 4446788999876542211000000
Q ss_pred --ccCCCcCCCCCceEEEEcCCCCEEEE-E-------------ecCeEEEEEcCCcceeeeeec-CCccCEEEEEEee--
Q 001367 927 --TPDGVMTLAPSETHIQFHKDQTRFLL-V-------------HETHLAIYEAEELTCLKQWFP-ISSVPISQATFSC-- 987 (1091)
Q Consensus 927 --~~~~~~~~~~~i~~l~fs~dg~~la~-~-------------~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~v~fs~-- 987 (1091)
.+.+..+ -.|.. -.+++.++ + .-|.|-+||.. |..++++.. +.-..-+.|+..|
T Consensus 183 P~iPagyAP--FnIqn----ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 183 PALPAGYAP--FNVQN----LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCCCCCCCC--cceEE----ECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh
Confidence 0111110 00111 02233332 1 23579999975 666666532 2234456677755
Q ss_pred ----CCCEEEEEEcCCcEEEEeCCCCceEEEeec
Q 001367 988 ----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 988 ----dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 1017 (1091)
.|.+|+---.||+|..+|..+|+.+..+..
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 578888777899999999999998877663
No 454
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.82 E-value=3.9 Score=44.94 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=67.0
Q ss_pred ccCEEEEEEeeCCCEEEEEEcCCcEEEEe---------CCCCc--eEEEeeccc-ccCCCCcccccceeEEEeCCCC--C
Q 001367 977 SVPISQATFSCDCRMVFTSFVDGTLSIHE---------ASNLE--VQCRILSTA-YLRPTTSCLHVYPHAIAAHPLK--P 1042 (1091)
Q Consensus 977 ~~~v~~v~fs~dg~~l~t~~~dg~v~iwd---------~~~~~--~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~d--~ 1042 (1091)
.-.|..+..++.|..++-+|.+|.+.++= ++.|+ ..|+..+.. .+- ..+..+.-.-++|||+- .
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f--tss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF--TSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceee--ccCCceeeeeccccCCccCC
Confidence 44677888899999999999998654432 23332 233332111 111 11344555678899953 4
Q ss_pred CeEEEEecCCcEEEEecCCCCCCcccCCCCccccCCC
Q 001367 1043 TQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQP 1079 (1091)
Q Consensus 1043 ~~l~~g~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~ 1079 (1091)
..|+.-..|+.+++|++++.-.-|..+++..+.+.-.
T Consensus 181 ~hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn~ 217 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTNV 217 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchhhccCCCcCCCCccc
Confidence 6788888999999999999888888887766555433
No 455
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.73 E-value=2.7 Score=50.72 Aligned_cols=147 Identities=12% Similarity=0.041 Sum_probs=89.0
Q ss_pred CeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee-----EEecCC----C--cceEEEeecccCCceEEEEEecCCeE
Q 001367 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----YSFEGH----G--APVYSLCPHAKENIHFIFSISVDGKI 511 (1091)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~----~--~~v~~~~~~~~~~~~~l~s~~~dg~i 511 (1091)
+|..+...+|++...++..+.+-.|..||+++-..- .-|..| . ....++.|.|... ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566777778877545556666668899998753211 111111 1 2233444544432 245666778888
Q ss_pred EEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccccc-ccceEEEEEcCCC
Q 001367 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAK 590 (1091)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~v~~~~~~ 590 (1091)
++..+........--.-....++++|+|.|+.++.+-. .+++.-|-.. .+....+...... ...|.+|+|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 87766544333333334457889999999999999865 5567666543 3333444333221 3679999998877
Q ss_pred CEEEE
Q 001367 591 DQILA 595 (1091)
Q Consensus 591 ~~l~~ 595 (1091)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 77766
No 456
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.69 E-value=34 Score=38.71 Aligned_cols=354 Identities=15% Similarity=0.060 Sum_probs=0.0
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC-ccEEEEEECCCCCEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~ 414 (1091)
.|.++.|.-.|. +-.|+.|| +..+|..+|+.+.. ..... .+|..+.-+-.| .|.+|
T Consensus 166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql-------------------~s~~~dk~I~al~~d~qg-~LWVG 222 (671)
T COG3292 166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQL-------------------ASPPLDKAINALIADVQG-RLWVG 222 (671)
T ss_pred cceeeeeeccCc--EEEecCCc-ceEEccccceEEEc-------------------CCCcchhhHHHHHHHhcC-cEEEE
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1091)
+.+| |++.+.++.+.... -..-..+.|..+.-..+|. +-.|+..|..+.--.+.+-.....+.|...-....+.
T Consensus 223 TdqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~ 296 (671)
T COG3292 223 TDQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLW 296 (671)
T ss_pred eccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCcccccccee
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcC---CCCEEEEEecCCCCceEEEEEecCCceeeEEE
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1091)
-+.+| -+-.++.+|.+++-+-+-..........+..+...+..| +.......+ .+.+.+-+-.+|..++..
T Consensus 297 ~D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns-----~g~L~van~stG~~v~sv 370 (671)
T COG3292 297 LDTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS-----IGELMVANGSTGELVRSV 370 (671)
T ss_pred eccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc-----cceEEEecCCCCcEEEEe
Q ss_pred ecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEE--
Q 001367 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL-- 649 (1091)
Q Consensus 572 ~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw-- 649 (1091)
.... ...|+.+++.. +..+-.|+...-+..|+.++.-...........+.|..+.-.|+++ |..|+.+|.++.=
T Consensus 371 ~q~R--g~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~~pe 446 (671)
T COG3292 371 HQLR--GMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKRDPE 446 (671)
T ss_pred eecc--ccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEecCcc
Q ss_pred --ECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeec
Q 001367 650 --ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 727 (1091)
Q Consensus 650 --d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 727 (1091)
.+.+...+.........+..+.+.|+++.. -..+.-++.-++.+.+..++++
T Consensus 447 ~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw--------------~a~g~gva~~~sq~~~~~~~l~------------ 500 (671)
T COG3292 447 SGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLW--------------LAAGSGVAAWESQRRMFVPILD------------ 500 (671)
T ss_pred ccchhcccccccCcCCcchhhhhccCCCCceE--------------EEecceeeeeccccceeccccc------------
Q ss_pred CCccccccEEEEEEecCCCeEEEeecCceEE
Q 001367 728 PSKVKANKISRLTYNNGGQAIFALASNGVHL 758 (1091)
Q Consensus 728 ~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~ 758 (1091)
....-....+--.+.++..+...|.++
T Consensus 501 ----~~~q~qy~f~~~~~d~vw~~~~Rg~vr 527 (671)
T COG3292 501 ----LTGQRQYSFVPVGGDEVWVHRLRGLVR 527 (671)
T ss_pred ----ccceeeEEEEEccCceEeeeeeceeee
No 457
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.56 E-value=26 Score=37.20 Aligned_cols=166 Identities=11% Similarity=0.066 Sum_probs=88.2
Q ss_pred cEEEEeCCCCceeEEecC------CCcceEEEeecccCC----ceEEEEEecCCeEEEEecCCCCceeeecCCC------
Q 001367 466 TIKVWDAVTGSRTYSFEG------HGAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------ 529 (1091)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 529 (1091)
.|.+||+.+++.++++.- ....+..+.+...+. +...++-+..+-|.++|+.+++.........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577889999988877643 234566777765332 2334444555679999998876555432211
Q ss_pred -------------CcEEEEEEcC---CCCEEEEEecCCCCceEEEEEecCC-----ce---------eeEEEeccccccc
Q 001367 530 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESE-----GA---------IKRTYQGLQLQHN 579 (1091)
Q Consensus 530 -------------~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~iwd~~~-----~~---------~~~~~~~~~~~~~ 579 (1091)
..+..++.+| ++++|.....++ -.+|.+.+ .. .++.+ +.. ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence 1255566655 666666554322 12222221 10 11111 111 12
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeEEEEeCCCCCCCCceEEEcc--CCCEEEE
Q 001367 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRICFNK--NGTLLAV 639 (1091)
Q Consensus 580 ~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~ 639 (1091)
....++++++|..+++--..+.|..|+..+. ..............+..+.+.+ +|.+.+.
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 4556788898888888889999999998761 2222222222234556777777 5544433
No 458
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.53 E-value=33 Score=38.29 Aligned_cols=200 Identities=12% Similarity=-0.003 Sum_probs=104.7
Q ss_pred ecCCCCEEEEEeCCeEEEEEccCceeEEEecCCC--CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeecccc-
Q 001367 809 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS- 885 (1091)
Q Consensus 809 ~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~- 885 (1091)
...||+..+...+|.|.-.|..+++.+....... ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3446766666668888888888888665443221 2333333333 565 6668889999999998898887766554
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec-cCCCcCCCCCceEEEEcCCCCEEEEEe--cCeEEEEE
Q 001367 886 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT-PDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYE 962 (1091)
Q Consensus 886 ~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~fs~dg~~la~~~--d~~i~vwd 962 (1091)
-.+..-..-.++..++ .+.++.+.-.|-.+++..=...... ... .+..-....++...+... ++.+.-.|
T Consensus 143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~------~~~~~~~~~~~~vy~~~~~~~~~~~a~~ 215 (370)
T COG1520 143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL------SIYGSPAIASGTVYVGSDGYDGILYALN 215 (370)
T ss_pred eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc------ccccCceeecceEEEecCCCcceEEEEE
Confidence 1122222222333222 3356666666666654321111111 000 011111133444444433 45677777
Q ss_pred cCCcceeeeeecCCccC---EEEEEEee-----CCCEEEEEEcCCcEEEEeCCCCceEEEeec
Q 001367 963 AEELTCLKQWFPISSVP---ISQATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 963 ~~~~~~~~~~~~~h~~~---v~~v~fs~-----dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 1017 (1091)
+.+|.........+... +....... .+.-+..++.++.+...+..+|+.+-++..
T Consensus 216 ~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 216 AEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred ccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 77787766532111111 10011111 112235666778888889998888866553
No 459
>PHA02790 Kelch-like protein; Provisional
Probab=90.36 E-value=11 Score=43.80 Aligned_cols=187 Identities=10% Similarity=0.008 Sum_probs=95.2
Q ss_pred CCcEEEEEeCCC-----eEEEEeccCccee--eeeccccCCeEEEEECCCCCEEEEEeCC--CcEEEEEcCCCceeeeee
Q 001367 854 DNNVIAIGMDDS-----TILIYNARSSEVI--SKLEGHSKRVTGLVFSDALNILVSSGGD--AQIFVWDVDGWGIQTCRS 924 (1091)
Q Consensus 854 ~~~~la~g~~dg-----~i~iwd~~~~~~~--~~l~~h~~~V~~l~~spdg~~las~s~D--g~i~vwd~~~~~~~~~~~ 924 (1091)
++.++++|+.++ .+..||..+++.. ..+.........+ .-+|+..+.||.+ ..+..||..++....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~--- 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVN--- 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEE---
Confidence 566777777543 5777888776432 2222211112222 2367777888764 357788876644222
Q ss_pred eeccCCCcCCCCCceEEEEcCCCCEEEEE-ec---CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCc
Q 001367 925 LQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE---THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 1000 (1091)
Q Consensus 925 ~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~ 1000 (1091)
+..+.. . ........-+|+..+.| .+ ..+..||..+.+....-...... -...+..-+|+..+.| |.
T Consensus 346 ~~~l~~--~---r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r-~~~~~~~~~~~IYv~G---G~ 416 (480)
T PHA02790 346 MPSLLK--P---RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH-YKSCALVFGRRLFLVG---RN 416 (480)
T ss_pred CCCCCC--C---CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc-ccceEEEECCEEEEEC---Cc
Confidence 111111 0 11122334466666663 32 35778998776554321111111 1122334567666666 45
Q ss_pred EEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecC-----CcEEEEecCCCCCCcc
Q 001367 1001 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWA 1067 (1091)
Q Consensus 1001 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~d-----g~v~~w~~~~~~~~~~ 1067 (1091)
+.+||..+++... ...++..... . .++.. ++...++||.+ ..+..+|+... +|.
T Consensus 417 ~e~ydp~~~~W~~----~~~m~~~r~~----~-~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~--~W~ 475 (480)
T PHA02790 417 AEFYCESSNTWTL----IDDPIYPRDN----P-ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY--SWN 475 (480)
T ss_pred eEEecCCCCcEeE----cCCCCCCccc----c-EEEEE--CCEEEEECCcCCCcccceEEEEECCCC--eEE
Confidence 7889988776552 1122221001 1 11222 47888888865 35778888543 464
No 460
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=90.28 E-value=46 Score=42.99 Aligned_cols=150 Identities=15% Similarity=0.164 Sum_probs=87.8
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.|-..++.|.-+|+|+++=+ .|+.++.||..++... .. -..-...++.++-.-||+..
T Consensus 360 aH~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~Wk---------~~----------~~~~d~~~S~Ls~qgdG~lY 417 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTARWK---------PP----------PDKSDTPFSSLSRQGDGKLY 417 (1774)
T ss_pred HHHHHhhccccCCCCCeEEe---ecCceeeeccccceec---------CC----------CCcccchhhhhcccCCCceE
Confidence 46667788888888885422 5688888887765322 10 01123456666666677766
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc------e--eEEecC
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------R--TYSFEG 483 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------~--~~~~~~ 483 (1091)
| = .|. .|-|+..+.... .....+.+...+++|+- .+.++-....+.+|++.... + .-.+.+
T Consensus 418 A-k-~~~--~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d 486 (1774)
T PF11725_consen 418 A-K-DDD--TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD 486 (1774)
T ss_pred e-c-CCC--ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence 6 2 222 233555443111 12235777888999983 36666666677999987541 1 122333
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCC
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1091)
-.....+|.++ ++ .|+.+..+|.++.=++..
T Consensus 487 G~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 487 GKAQAQSVGLS--ND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred Cchhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence 33355666663 22 688888888887766643
No 461
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.99 E-value=1.9 Score=46.33 Aligned_cols=122 Identities=11% Similarity=0.142 Sum_probs=79.8
Q ss_pred CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 413 (1091)
.++|.++.||+|.+ ++|+--.+++|.+.+....+....... ..+..+..|....|+.+ .-+|.
T Consensus 66 ~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~A~ 128 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEIAF 128 (657)
T ss_pred CCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeEEE
Confidence 45999999999998 789999999999999854433221000 01223456888999866 66777
Q ss_pred EECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
....| +-+|-+...+ +.....+.|...|.--.|.++.+-.+|+|+-..+++.=+-+.++
T Consensus 129 i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 129 ITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 77666 7777766532 22224557888999999999988433333323444433443433
No 462
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.88 E-value=0.99 Score=30.77 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=23.4
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCC--CcEEEE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW 362 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~d--g~i~iW 362 (1091)
......-.+.+|||||++|+.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34455778999999999888888777 766666
No 463
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.82 E-value=4.3 Score=50.17 Aligned_cols=172 Identities=14% Similarity=0.196 Sum_probs=100.2
Q ss_pred ccCCCchheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc
Q 001367 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1091)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1091)
.+..+|+.++.... |...-..+-+-|.=.+.-+ +.|+.+.+|+.+++..... +.+-+.
T Consensus 63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~sh 120 (1311)
T KOG1900|consen 63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSH 120 (1311)
T ss_pred ccccCCHHHHHHhc-CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence 34556776666655 4444455555565433333 4679999999999665543 334444
Q ss_pred cEEEEE--------ECCCCCEEEEEECCCEEEEEEeeCCccccee------EEEeccccCeeEEEEcCCCCceEEEEeeC
Q 001367 398 SVNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1091)
Q Consensus 398 ~V~~l~--------~spdg~~las~~~d~~i~iwd~~~~~~~~~~------~~~~~h~~~v~~~~~s~d~~~~~l~s~~~ 463 (1091)
.|..+. |-|.=++|.+...--.|.|+-+.-.+..... ..+.-....|+++....+|+ .+ -+|.
T Consensus 121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF-~~G~ 197 (1311)
T KOG1900|consen 121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IF-FAGR 197 (1311)
T ss_pred hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EE-Eeec
Confidence 454444 3344455555555555777665433221111 11222345789999888898 44 4555
Q ss_pred CCcEEEEeC----CCC---c-e----------------eEEec-CCCcceEEEeecccCCceEEEEEecCCeEEEEecCC
Q 001367 464 DKTIKVWDA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1091)
Q Consensus 464 d~~i~iwd~----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1091)
|| .+|.+ ..| + + +-.+. .+..+|..+.+.. ....+.+-+..|+|.+||+..
T Consensus 198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 66 44433 211 1 1 01122 4677899998843 345888999999999999875
No 464
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.34 E-value=17 Score=39.64 Aligned_cols=151 Identities=14% Similarity=0.132 Sum_probs=83.4
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCe------EEEEeccC--c--ce-----eeeeccccC--------CeEEEEECCCCC
Q 001367 842 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EV-----ISKLEGHSK--------RVTGLVFSDALN 898 (1091)
Q Consensus 842 ~~~i~~l~~s~~~~~~la~g~~dg~------i~iwd~~~--~--~~-----~~~l~~h~~--------~V~~l~~spdg~ 898 (1091)
-+.+..+++.++++.+++ .+++|. ++.+++.. + .. ...+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788888864555544 556666 65555543 1 11 111222222 233788888888
Q ss_pred EEEEEeCC------CcEEEEEcCCCceeeeeeeeccC-------CCcCCCCCceEEEEcCCCCEEEEE------ecC--e
Q 001367 899 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET--H 957 (1091)
Q Consensus 899 ~las~s~D------g~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~i~~l~fs~dg~~la~~------~d~--~ 957 (1091)
++++.-.+ ..|..++.+ +.......+...- ..........+++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88877666 778888876 3332211111100 111222468899999999955442 222 1
Q ss_pred -------EEE--EEcCC-cceeeeee--cC------CccCEEEEEEeeCCCEEEE
Q 001367 958 -------LAI--YEAEE-LTCLKQWF--PI------SSVPISQATFSCDCRMVFT 994 (1091)
Q Consensus 958 -------i~v--wd~~~-~~~~~~~~--~~------h~~~v~~v~fs~dg~~l~t 994 (1091)
+++ ||..+ ++....+. .. ....|+.+.+-+|+++|+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 55544 32222221 11 3567889999999997763
No 465
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=89.18 E-value=52 Score=38.59 Aligned_cols=80 Identities=9% Similarity=0.123 Sum_probs=47.4
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeec-----cccC
Q 001367 813 DAYLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSK 886 (1091)
Q Consensus 813 g~~la~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~-----~h~~ 886 (1091)
+..++-.....|++.+...++....... ....|.+.+... .+++.+..++.+..+.+.......... ....
T Consensus 418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~---~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (504)
T PF10433_consen 418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIND---PQVLVALSGGELVYFELDDNKISVSDNDETILELDN 494 (504)
T ss_dssp TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEESS---SEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEECC---CEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence 5566666677789999887777766543 344566666643 466667778899999888765532221 1457
Q ss_pred CeEEEEECC
Q 001367 887 RVTGLVFSD 895 (1091)
Q Consensus 887 ~V~~l~~sp 895 (1091)
.|.|+..+|
T Consensus 495 eis~l~i~p 503 (504)
T PF10433_consen 495 EISCLSIEP 503 (504)
T ss_dssp -EEEEE---
T ss_pred ceEEEEeCC
Confidence 788888766
No 466
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.17 E-value=1.7 Score=30.09 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCC--cEEEEEeCCCeEEEEeccC
Q 001367 843 PTATSLAFNPHDN--NVIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 843 ~~i~~l~~s~~~~--~~la~g~~dg~i~iwd~~~ 874 (1091)
+.++++.|||..+ .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998555 6999998899999999985
No 467
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.01 E-value=32 Score=35.89 Aligned_cols=214 Identities=11% Similarity=0.100 Sum_probs=119.9
Q ss_pred CeeEEEEcCCCCceEEEEeeCCCcEEEEeCC------CC-ceeEEecC-----CCcceEEEeeccc------CC----ce
Q 001367 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TG-SRTYSFEG-----HGAPVYSLCPHAK------EN----IH 500 (1091)
Q Consensus 443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~------~~----~~ 500 (1091)
.-+.|+|+|.+. +-++...-+...+||.. .. .++-++.. .....+.+.|+.. .+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 467899999887 66667777889999976 12 22233321 1234555555422 11 13
Q ss_pred EEEEEecCCeEEEEecCCCCc-----eeeecCC-CC-cEEEEEEcC--CCCEEEEEecCCCCceEEEEEecCCceeeE--
Q 001367 501 FIFSISVDGKIKAWLYDSLGA-----RVDYDAP-GL-GCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKR-- 569 (1091)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~-~~-~i~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~-- 569 (1091)
.++.+++||+|.-|...-... ...+... .. -...+++.. .+.+|..+-. ..++|.++|-.-.....
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 478899999999997533222 1223221 22 234555543 3566665543 25668888754332210
Q ss_pred EEeccc--cccc--ceE---------EEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc----
Q 001367 570 TYQGLQ--LQHN--SVS---------VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---- 632 (1091)
Q Consensus 570 ~~~~~~--~~~~--~v~---------~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 632 (1091)
.+.... ..-. .|. -..-.++...=+.|..-|.|-+||+ .|.+++.+...+....-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 011000 0000 011 1111122222233344578999997 577888886666655667787765
Q ss_pred --CCCEEEEEECCCeEEEEECCCCCeeccccc
Q 001367 633 --NGTLLAVIANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 633 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
.+.+|+---.||+|..||..+++.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 356666666799999999998877666553
No 468
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.98 E-value=1.7 Score=30.09 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=26.6
Q ss_pred ccEEEEEECCC-C--CEEEEEECCCEEEEEEeeCC
Q 001367 397 VSVNRVVWSPD-G--SLLGVAYSKHIVQLYAYHGG 428 (1091)
Q Consensus 397 ~~V~~l~~spd-g--~~las~~~d~~i~iwd~~~~ 428 (1091)
++|.++.|||+ + .+||.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999984 4 58888888899999999863
No 469
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.93 E-value=2 Score=41.63 Aligned_cols=31 Identities=39% Similarity=0.606 Sum_probs=25.9
Q ss_pred ccEEEEEECCCC------CEEEEEECCCEEEEEEeeC
Q 001367 397 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHG 427 (1091)
Q Consensus 397 ~~V~~l~~spdg------~~las~~~d~~i~iwd~~~ 427 (1091)
..|.+++|||-| .+||+...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999954 5788899999999998664
No 470
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.58 E-value=31 Score=35.18 Aligned_cols=224 Identities=10% Similarity=0.088 Sum_probs=123.5
Q ss_pred CCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccce
Q 001367 694 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 773 (1091)
Q Consensus 694 s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 773 (1091)
++||..-+++...+.|--.|..++ ....+.+ +....-..+..-|||..-++-+..+..+
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tG---ev~~ypL---g~Ga~Phgiv~gpdg~~Witd~~~aI~R--------------- 128 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATG---EVETYPL---GSGASPHGIVVGPDGSAWITDTGLAIGR--------------- 128 (353)
T ss_pred CCCCceEEecCccccceecCCCCC---ceEEEec---CCCCCCceEEECCCCCeeEecCcceeEE---------------
Confidence 566655555555455444443322 1222222 1334445666777776555444333222
Q ss_pred eeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCC----------eEEEEEccCceeEEEecCCCC
Q 001367 774 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG----------VISLYIVMTFKTILTIMPPSP 843 (1091)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg----------~i~iwd~~~~~~~~~~~~~~~ 843 (1091)
.++++.+ ..++.++............|.++|.+-.++..| .|++|+.- ...
T Consensus 129 --------~dpkt~e-vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~ 189 (353)
T COG4257 129 --------LDPKTLE-VTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGG 189 (353)
T ss_pred --------ecCcccc-eEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCC
Confidence 2344443 444555554456778889999999999988633 24444432 223
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc--eeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001367 844 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 921 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~ 921 (1091)
.-..|+..| +|.+-++.-.+..|-..|..++. .+-.-.+....-..+.-+|.|+.-+|-...+.+.-+|-....
T Consensus 190 gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--- 265 (353)
T COG4257 190 GPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--- 265 (353)
T ss_pred CCcceEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc---
Confidence 456788899 77777776677778777777662 121122212234455567788888887777778777766533
Q ss_pred eeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCC
Q 001367 922 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 965 (1091)
Q Consensus 922 ~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~ 965 (1091)
......+.... .-.++.....|+.-.+ ...+.|.-+|-++
T Consensus 266 W~eypLPgs~a----rpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 266 WIEYPLPGSKA----RPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ceeeeCCCCCC----CcceeeeccCCcEEeeccccCceeecCccc
Confidence 11222222111 2445666666665554 3445555555543
No 471
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.34 E-value=2.2 Score=43.14 Aligned_cols=76 Identities=9% Similarity=0.108 Sum_probs=53.1
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeee-ee-eccCCCc----CCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCc
Q 001367 893 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-SL-QTPDGVM----TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 966 (1091)
Q Consensus 893 ~spdg~~las~s~Dg~i~vwd~~~~~~~~~~-~~-~~~~~~~----~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~ 966 (1091)
+..++++|+..+.+|.+++||+.+.+..... .+ ..+.... .....|..+.++.+|.-|++-++|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999997654322 11 1111100 1224688999999999988877888999987644
Q ss_pred ce
Q 001367 967 TC 968 (1091)
Q Consensus 967 ~~ 968 (1091)
..
T Consensus 98 ~W 99 (219)
T PF07569_consen 98 CW 99 (219)
T ss_pred ee
Confidence 33
No 472
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.10 E-value=16 Score=40.28 Aligned_cols=150 Identities=10% Similarity=0.075 Sum_probs=89.6
Q ss_pred EEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccC------CceEEEEEecCCeEEEEecCCCC
Q 001367 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSLG 520 (1091)
Q Consensus 447 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~ 520 (1091)
+-...+...+++..|+....++-.|++.|+.+..+..|...+ +.+.|.. +.+.|+ |-.+..|.-.|.+...
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccccC
Confidence 333334444466677777889999999999999998887664 3333321 223344 4445555555655444
Q ss_pred ceeeecCCCCcEEEEEEc----CCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE
Q 001367 521 ARVDYDAPGLGCTRMAYS----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 596 (1091)
Q Consensus 521 ~~~~~~~~~~~i~~~~~s----~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 596 (1091)
..........-.+.-.|+ ..+-++++++..| -|++||.-.-.....+.+.. ..|..+..+.+|+++++.
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kG----DirLyDRig~rAKtalP~lG---~aIk~idvta~Gk~ilaT 621 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKG----DIRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHILAT 621 (776)
T ss_pred CceeeeeehhccccccccccccccCceEEEecCCC----ceeeehhhcchhhhcCcccc---cceeeeEeecCCcEEEEe
Confidence 222222111112212222 2445788887633 49999966555555555555 788899999999999987
Q ss_pred eCCCeEEEEEC
Q 001367 597 GDDHVIKIWDM 607 (1091)
Q Consensus 597 s~dg~i~iwd~ 607 (1091)
+.. .+.+-|+
T Consensus 622 Ck~-yllL~d~ 631 (776)
T COG5167 622 CKN-YLLLTDV 631 (776)
T ss_pred ecc-eEEEEec
Confidence 754 4555554
No 473
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.94 E-value=11 Score=43.33 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=53.4
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
...-++++.-+|.|+.++.+..||.|++|+.......+ +-....+-..+.|...| |++...|..+.-|. +.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~d 83 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-ED 83 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-cc
Confidence 34567888889999999999999999999987654321 11233345566776655 56666677777886 55
Q ss_pred CceeEEe
Q 001367 475 GSRTYSF 481 (1091)
Q Consensus 475 ~~~~~~~ 481 (1091)
|-..+.|
T Consensus 84 gvvqqqf 90 (1636)
T KOG3616|consen 84 GVVQQQF 90 (1636)
T ss_pred Ccchhhc
Confidence 5444444
No 474
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.02 E-value=42 Score=39.40 Aligned_cols=508 Identities=8% Similarity=-0.008 Sum_probs=0.0
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEE---cCCCcEEEEEc-CCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVG---TNVGDTGLWDV-NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg---~~dg~i~iWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.++..-++.+-.++|..-+.++-+++ +.|..|.|... ..+..-....|. ..-....+.++.
T Consensus 10 ~~fpt~sg~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s~~~d~s~l~~F~---------------ip~f~dkl~s~~ 74 (1243)
T COG5290 10 STFPTASGDEDELGFDSVGDWIYITCVLGSTDKGIEVAKESSIYDESGLKRFE---------------IPFFPDKLLSFK 74 (1243)
T ss_pred ccCCCCCCChHHhcccccCceEEEEeecCCCCCCeeeeeeccccchhheeEec---------------cCCcchHhhhhh
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1091)
+-.+-..+...-..|.|..--...--.-.....+..-...|.+.+||.|.+ .++....+..|.+++ ..-.++....-
T Consensus 75 hf~~~~~~~f~~~~gDii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~--~~cvvt~~r~il~~~-k~fd~ise~~L 151 (1243)
T COG5290 75 HFHVLTFEYFLIDEGDIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEK--TWCVVTSTREILLFD-KYFDPISEYHL 151 (1243)
T ss_pred hhhhhheeeEEecCCcEEEEEcCCCcccchhhhhccccCceEEEeeccCCc--eEEEEEcCceEEEEe-ccccccchhhc
Q ss_pred CCcceEEEeecccCCceEEEEEecC------------------------CeEEEEecCCCCceeeecCCCCcEEEEEEcC
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVD------------------------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSA 539 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~ 539 (1091)
.......+ ..-++.+.. ..=.+.++++.+.. ++|-.
T Consensus 152 ~~~dl~ef--------~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~------------i~wrg 211 (1243)
T COG5290 152 KKSDLVEF--------GKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKI------------IFWRG 211 (1243)
T ss_pred chhHHHHh--------ccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceE------------EEEcc
Q ss_pred CCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCe-----EEEEECCC---Ce
Q 001367 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNK---VQ 611 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~-----i~iwd~~~---~~ 611 (1091)
|..+.+.+.........+++|. +.|.+-..-.... +.-..+.|-|+|..+++-+.||. |.++..+. |+
T Consensus 212 D~~y~~v~r~Ee~prra~rvys-reg~lds~sep~~---g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGe 287 (1243)
T COG5290 212 DTEYNLVGRSEERPRRAFRVYS-REGQLDSASEPVT---GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGE 287 (1243)
T ss_pred Ccceeeecchhcccccceeeec-cccccccccCCcc---cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCC
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCC
Q 001367 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNE 691 (1091)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~ 691 (1091)
.-........ +..++|+-....++++.. +.+.+|...+-............+.-+.|.|
T Consensus 288 f~lr~~~dEk---~~~~~wn~~s~vlav~~~-n~~~lwttkNyhWYLK~e~~ip~~s~vkwhp----------------- 346 (1243)
T COG5290 288 FDLRVGCDEK---AFLENWNLLSTVLAVAEG-NLLKLWTTKNYHWYLKVERQIPGISYVKWHP----------------- 346 (1243)
T ss_pred ccccCCchhh---hhhhhhhHHHHHHHHhhc-ceEEEEEccceEEEEEEeecCCCcceeeecc-----------------
Q ss_pred CCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccccccc
Q 001367 692 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 771 (1091)
Q Consensus 692 ~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~ 771 (1091)
..+...+++++. .|..+.|+..-..-.+......-..+-++........
T Consensus 347 --e~~nTl~f~d~~-----------------------------~I~~V~f~~k~~~~~s~~p~d~g~~~ViDGs~~l~Tp 395 (1243)
T COG5290 347 --EEKNTLLFRDGE-----------------------------RILRVFFSEKKTHHGSEYPFDNGTSYVIDGSYMLYTP 395 (1243)
T ss_pred --ccCcEEEEecCC-----------------------------eEEEEEeehhhhcCCcccCccCCceEEEcCceEEecc
Q ss_pred ceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCC-------C
Q 001367 772 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP-------T 844 (1091)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~-------~ 844 (1091)
-.....++..+...-+. ...|..++.+-..+..+...+..+..+...+.+.+..+..... .
T Consensus 396 lsl~n~PPPm~~~~~~~------------d~NV~dv~~s~~~~~~aa~~~drli~f~~~s~e~i~k~~ef~~sef~s~v~ 463 (1243)
T COG5290 396 LSLKNLPPPMFSVRVGF------------DTNVVDVFPSFAEKKGAALLRDRLIMFRWDSEEFINKRTEFLESEFDSIVL 463 (1243)
T ss_pred hhhhcCCCCeEEEEecC------------CCceeeeccchhhhhHhhhccceeEEEecCcHHHHHHhccccHHhhhhhcc
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCceee
Q 001367 845 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQT 921 (1091)
Q Consensus 845 i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~las~s~Dg~i~vwd~~~~~~~~ 921 (1091)
...+.+-. ++..++....++.-+++=++.+..-....--...+..-+.-. +..++.-+..+|.++-+|++.
T Consensus 464 f~~~l~l~-~~~v~ll~dtnn~s~~~i~~~~d~~e~~k~~~ve~~~~~~l~~~~c~~~l~y~t~~G~v~~yn~e~----- 537 (1243)
T COG5290 464 FDGFLVLK-SGHVFLLKDTNNESDTYITRNGDVDERKKRGTVETRRTSTLVHQLCQTLLRYGTCVGVVKHYNFEE----- 537 (1243)
T ss_pred ccceEEec-CceEEEEeccCCCcceEEeecCcccchhhccceeeeeeehhhHHHHHHHHhhcccceeEEEecchh-----
Q ss_pred eeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 922 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 922 ~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
+.+........ +......|-...+++
T Consensus 538 -kl~e~~kfp~~----v~df~v~pVH~t~v~ 563 (1243)
T COG5290 538 -KLYELLKFPNG----VIDFSVDPVHSTLVA 563 (1243)
T ss_pred -hhHHHhhCCCc----eeEEEeeccccceee
No 475
>PLN02153 epithiospecifier protein
Probab=87.00 E-value=53 Score=36.14 Aligned_cols=162 Identities=9% Similarity=0.010 Sum_probs=75.6
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-Eec-----------CeE
Q 001367 896 ALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----------THL 958 (1091)
Q Consensus 896 dg~~las~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d-----------~~i 958 (1091)
++++++.|+.+ ..+.++|..+.+-.. +..+.............+..-++++.+. |.+ ..+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~---~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTF---LTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEE---eccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceE
Confidence 56677777754 247788888754322 2211100000011222223345565555 322 247
Q ss_pred EEEEcCCcceeeeeecC--CccCEEEEEEeeCCCEEEEEEcC-------------CcEEEEeCCCCceEEEeecccccCC
Q 001367 959 AIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-------------GTLSIHEASNLEVQCRILSTAYLRP 1023 (1091)
Q Consensus 959 ~vwd~~~~~~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~ 1023 (1091)
.+||..+.+.......+ ...+-...+..-+++.++.++.+ ..|.+||..+.+....-. ....|.
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~-~g~~P~ 240 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET-TGAKPS 240 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc-cCCCCC
Confidence 78998876544321111 01111111223466666655532 358888888876553211 111121
Q ss_pred CCcccccceeEEEeCCCCCCeEEEEecC--------------CcEEEEecCCCCCCcccCC
Q 001367 1024 TTSCLHVYPHAIAAHPLKPTQFAVGLTN--------------GEVYVIEPNEPGDTWAVLP 1070 (1091)
Q Consensus 1024 ~~~~~~v~~~~~~~~p~d~~~l~~g~~d--------------g~v~~w~~~~~~~~~~~~~ 1070 (1091)
. +....++.+ ++.+++.|+.. +.|..+|+ ...+|...+
T Consensus 241 ~----r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~--~~~~W~~~~ 292 (341)
T PLN02153 241 A----RSVFAHAVV---GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT--ETLVWEKLG 292 (341)
T ss_pred C----cceeeeEEE---CCEEEEECcccCCccccccccccccccEEEEEc--CccEEEecc
Confidence 1 001111222 36788888852 24566666 445687664
No 476
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.90 E-value=57 Score=36.45 Aligned_cols=150 Identities=9% Similarity=-0.018 Sum_probs=81.0
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcc
Q 001367 888 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT 967 (1091)
Q Consensus 888 V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~ 967 (1091)
...+..++||.+++.+..-..++-||-.... ...+.... . ..+..+.|.++|..++++..|.+..= ...++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~--~---~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRAS--A---RRIQNMGWRADGGLWLLTRGGGLYVS-KGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCC--c---cceeeeeEcCCCCEEEEeCCceEEEe-cCCCC
Confidence 4456677888877755433333334432200 01111111 1 25889999999999998887776543 33333
Q ss_pred -----eeeeeecC-CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCC
Q 001367 968 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1041 (1091)
Q Consensus 968 -----~~~~~~~~-h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1041 (1091)
........ ....+.++.|.+|+..+++ +..|.+... .+.|+.-.+.......+ ..++ .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~~~~~~~~~-----~~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKRDKGADNIA-----ANLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeEccccCCCC-----ccee--EEEEcC--
Confidence 11211111 1245889999988886665 577866655 34454322221111111 2244 455554
Q ss_pred CCeEEEEecCCcEEEE
Q 001367 1042 PTQFAVGLTNGEVYVI 1057 (1091)
Q Consensus 1042 ~~~l~~g~~dg~v~~w 1057 (1091)
.+...+.+.+|.|..|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 3556667778887665
No 477
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.79 E-value=62 Score=36.71 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=41.4
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
+...=+..+.|+|.|||+ +|++--..|.|++++..++.......+ ..............|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 334445899999999997 666654469999998665542211111 110011136788999999874
No 478
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=86.58 E-value=54 Score=36.68 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=18.3
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
+.+||.++.+....-..+.. .....+..-+++++++|+.
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~ 352 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGE 352 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCC
Confidence 45788877654322222111 1122233345666666664
No 479
>PLN02193 nitrile-specifier protein
Probab=86.56 E-value=69 Score=37.07 Aligned_cols=162 Identities=10% Similarity=0.034 Sum_probs=79.1
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-Eec-----CeEEEEEcC
Q 001367 896 ALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAE 964 (1091)
Q Consensus 896 dg~~las~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d-----~~i~vwd~~ 964 (1091)
++++.+.|+.+ ..+..+|+.+.+... +........ ..-...+..-++++.+. +.+ ..+..||..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~---l~~~~~~P~--~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~ 302 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKL---LTPVEEGPT--PRSFHSMAADEENVYVFGGVSATARLKTLDSYNIV 302 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEE---cCcCCCCCC--CccceEEEEECCEEEEECCCCCCCCcceEEEEECC
Confidence 56677777765 357788888755322 221110010 01112222234555555 332 347788887
Q ss_pred CcceeeeeecC--CccCEEEEEEeeCCCEEEEEEcC----CcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeC
Q 001367 965 ELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVD----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1038 (1091)
Q Consensus 965 ~~~~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1038 (1091)
+.+.......+ ...+-...+..-+++.++.++.+ ..+.+||+.+.+....-. ....|.. +....++.+
T Consensus 303 t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~-~g~~P~~----R~~~~~~~~- 376 (470)
T PLN02193 303 DKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVET-FGVRPSE----RSVFASAAV- 376 (470)
T ss_pred CCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEecc-CCCCCCC----cceeEEEEE-
Confidence 76543221100 01111112223467777777765 358899998887643211 1111111 011112222
Q ss_pred CCCCCeEEEEecC--------------CcEEEEecCCCCCCcccCCCC
Q 001367 1039 PLKPTQFAVGLTN--------------GEVYVIEPNEPGDTWAVLPPD 1072 (1091)
Q Consensus 1039 p~d~~~l~~g~~d--------------g~v~~w~~~~~~~~~~~~~~~ 1072 (1091)
++++++.|+.+ +.+.++|+.. .+|...++.
T Consensus 377 --~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t--~~W~~~~~~ 420 (470)
T PLN02193 377 --GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET--LQWERLDKF 420 (470)
T ss_pred --CCEEEEECCccCCccccccCccceeccEEEEEcCc--CEEEEcccC
Confidence 36788888864 2466777644 558866543
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.34 E-value=2.6 Score=45.25 Aligned_cols=172 Identities=13% Similarity=0.144 Sum_probs=94.3
Q ss_pred eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCccee-eee-ccccC----CeE-EEEECCCCCEEEEEeC
Q 001367 833 KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKL-EGHSK----RVT-GLVFSDALNILVSSGG 905 (1091)
Q Consensus 833 ~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~-~~l-~~h~~----~V~-~l~~spdg~~las~s~ 905 (1091)
+.++.+......+..+-..| ||+.+.+-+. ..+.++++.+...- ..+ ....+ .|+ ++..-..|.-|..++.
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 34444555667888899999 8988887665 68899988764321 111 11111 122 1222234566777889
Q ss_pred CCcEEEE-EcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEE
Q 001367 906 DAQIFVW-DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQA 983 (1091)
Q Consensus 906 Dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v 983 (1091)
||.|.-| |+..+.......++..+-. +.++..+.=-.+.+-+++ ...|++.++.....+.+.. .. --..+.-+
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~---pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~-~~~~~~~~ 363 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLA---PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ER-AYQAPQLV 363 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccC---cccceeeccccccceEEEEcCCCceeeeecccCcceeh-hh-hhcCccee
Confidence 9988877 4443322111111111111 112322222223333444 4556666665444333221 11 12356678
Q ss_pred EEeeCCCEEEEEEcCCcEEEEeCCCCceE
Q 001367 984 TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1012 (1091)
Q Consensus 984 ~fs~dg~~l~t~~~dg~v~iwd~~~~~~~ 1012 (1091)
++||++.++++- ..|.++++.+++...-
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCCC
Confidence 999999999864 5678999988876544
No 481
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.14 E-value=13 Score=37.94 Aligned_cols=148 Identities=11% Similarity=0.062 Sum_probs=83.2
Q ss_pred EEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC---ceeeEEEecccccccceEEEEEcC
Q 001367 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT 588 (1091)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~v~~~~ 588 (1091)
.+||+.+.+..........-+.+-.+-+||+++.+++. .++...+++++... ..........-.....-.+...-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45888776554433333334455568899999988875 34667788888654 111111111011123444556678
Q ss_pred CCCEEEEEeCCC-eEEEEECCC--CeeEEE--Ee---CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccc
Q 001367 589 AKDQILAAGDDH-VIKIWDMNK--VQLLTT--ID---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1091)
Q Consensus 589 ~~~~l~~~s~dg-~i~iwd~~~--~~~~~~--~~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 660 (1091)
||+.++.|+... +..+|.... ...... +. .......-..+...|+|++++.+..+. .|||..+.+.++.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 999999987654 445555422 111111 11 011111234677889999998887654 45688777665555
Q ss_pred cc
Q 001367 661 GV 662 (1091)
Q Consensus 661 ~~ 662 (1091)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 43
No 482
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.82 E-value=5 Score=40.54 Aligned_cols=75 Identities=9% Similarity=-0.062 Sum_probs=56.1
Q ss_pred EEEcCCCCEEEE-EecCeEEEEEcCCcceeeee------ec-------CCccCEEEEEEeeCCCEEEEEEcCCcEEEEeC
Q 001367 941 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 941 l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~------~~-------~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~ 1006 (1091)
+.+..++.+|++ ..+|.+++||+.+++.+... +. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 445667777776 89999999999998876442 22 2457889999999998887764 688999998
Q ss_pred CCCceEEEee
Q 001367 1007 SNLEVQCRIL 1016 (1091)
Q Consensus 1007 ~~~~~~~~~~ 1016 (1091)
.-+.......
T Consensus 95 ~L~~W~~vsd 104 (219)
T PF07569_consen 95 DLGCWIRVSD 104 (219)
T ss_pred ccceeEEecc
Confidence 8776664433
No 483
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.78 E-value=51 Score=38.16 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=71.6
Q ss_pred CCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEE
Q 001367 864 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 943 (1091)
Q Consensus 864 dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f 943 (1091)
.+...++|.. |..+..+.........+..-++|.+++..+ ..++.+|+..... . ......+... .-..+..
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~-~--~~~l~~~~~~---~HHD~~~ 197 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVI-W--EYDLPGGYYD---FHHDIDE 197 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EE-E--EEE--TTEE----B-S-EEE
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEE-E--eeecCCcccc---cccccEE
Confidence 4455555543 444444332222111166678998887655 7788888876321 1 1222221100 1236788
Q ss_pred cCCCCEEEEEe--------------cCeEEEEEcCCcceeeeeecC-C-------------------------ccCEEEE
Q 001367 944 HKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPISQA 983 (1091)
Q Consensus 944 s~dg~~la~~~--------------d~~i~vwd~~~~~~~~~~~~~-h-------------------------~~~v~~v 983 (1091)
-|+|.+|+.+. +..|..+| .+|+.+..|... | -..+.++
T Consensus 198 l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi 276 (477)
T PF05935_consen 198 LPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSI 276 (477)
T ss_dssp -TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEE
T ss_pred CCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCcc
Confidence 89999998754 23466666 677666554211 1 1357889
Q ss_pred EEee-CCCEEEEEEcCCcEEEEeCCCCceEEEeeccc
Q 001367 984 TFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1019 (1091)
Q Consensus 984 ~fs~-dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~ 1019 (1091)
.+.+ ++.+|+++-.-..|...|..+++..-.+....
T Consensus 277 ~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 277 DYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred EEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 9999 55555555444578888988998887766543
No 484
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.67 E-value=53 Score=35.79 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=87.8
Q ss_pred ccccEEEEEEecCCCeEEEeecCce------EEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCee
Q 001367 732 KANKISRLTYNNGGQAIFALASNGV------HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 805 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 805 (1091)
.-+.+..+.+.+++..+++.+.+|. +...++..... ..........+.+-+.. |..+ . .......
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~-----~--~~~~D~E 88 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPF-----P--KNGLDPE 88 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcC-----C--cCCCChh
Confidence 4467888999976666888887777 55555443111 00111111111111111 1101 0 0122556
Q ss_pred EEEecCCCCEEEEEe-C------CeEEEEEccCceeEEEec---------------CCCCCeEEEEEcCCCCcEEEEEeC
Q 001367 806 CFALSKNDAYLFSAS-G------GVISLYIVMTFKTILTIM---------------PPSPTATSLAFNPHDNNVIAIGMD 863 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~-d------g~i~iwd~~~~~~~~~~~---------------~~~~~i~~l~~s~~~~~~la~g~~ 863 (1091)
++++.++|.++++.. + ..|.-++.. |+....+. ..+....+++++| +|+.|.++.+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEEC
Confidence 788888888877765 4 567777766 66554441 1234678999999 7875555432
Q ss_pred -----CC--e-------EEEE--eccC-cce----eeeecc-----ccCCeEEEEECCCCCEEEE
Q 001367 864 -----DS--T-------ILIY--NARS-SEV----ISKLEG-----HSKRVTGLVFSDALNILVS 902 (1091)
Q Consensus 864 -----dg--~-------i~iw--d~~~-~~~----~~~l~~-----h~~~V~~l~~spdg~~las 902 (1091)
|+ . ++++ |..+ ++. ...+.. ....|+.+.+-+++++|+-
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 22 1 4454 5444 222 233332 3457888999999887763
No 485
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.42 E-value=60 Score=35.34 Aligned_cols=70 Identities=9% Similarity=-0.064 Sum_probs=34.2
Q ss_pred CceEEEEEec-----CCeEEEEecCCCCceeeecCCC-CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee
Q 001367 498 NIHFIFSISV-----DGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1091)
Q Consensus 498 ~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1091)
++.+.+.|+. ...+..||+.+.+=...-.... ......+...+++..+.++.++.....+..||..+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 3456666664 2357777776543222111111 11222233445666666665332223467888887654
No 486
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.12 E-value=16 Score=46.13 Aligned_cols=69 Identities=10% Similarity=0.164 Sum_probs=46.3
Q ss_pred CceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCce
Q 001367 937 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1011 (1091)
Q Consensus 937 ~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~ 1011 (1091)
++.+..+...+..+.....+.+-+|+.........+...+... +.++..++++..||.+.+||...|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecCCEEeeecCCCce
Confidence 4455555555555555566666677655444444433322211 88999999999999999999999865
No 487
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.12 E-value=3.9 Score=48.14 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=78.3
Q ss_pred CcEEEEEcCC-CceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccc-c-ccceeeeeecCCCccEEEEEEC--CCCCE
Q 001367 336 SPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGA-C-SMLFKTALVRDPGVSVNRVVWS--PDGSL 410 (1091)
Q Consensus 336 ~V~~v~fspd-g~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~h~~~V~~l~~s--pdg~~ 410 (1091)
.|..+....= +..+|+.+..||.|.+|.+++=-...... .-+... . ....+......-...++.++++ ...++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceE
Confidence 4555544432 22478888999999999873210000000 000000 0 0000000111234689999999 88999
Q ss_pred EEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCC----ceEEEEeeCCCcEEEEeC
Q 001367 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK----QISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~----~~~l~s~~~d~~i~iwd~ 472 (1091)
||++++...|.||-............-..|...|.+|+|-++.. ...+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99999999888887765321111101113667899999977641 136888999999999886
No 488
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.87 E-value=30 Score=31.28 Aligned_cols=122 Identities=13% Similarity=0.080 Sum_probs=69.8
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceee---eceeEEeccccccceeeeeecCCCccEEEEEECC-----CCC
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGS 409 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~ 409 (1091)
..-.|..... -|++++..|.|.|.+......... ..++ +-.-+..|++++-.+ +..
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~---------------~LNin~~italaaG~l~~~~~~D 65 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDIS---------------FLNINQEITALAAGRLKPDDGRD 65 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCccccccccccCcee---------------EEECCCceEEEEEEecCCCCCcC
Confidence 3345555555 357777789999998765432211 0111 112346777776443 345
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCC--CceEEEEeeCCCcEEEEeCCCCceeEEe
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC--KQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1091)
.|+.|+. ..+..||+.....+. .+.-.+.|.++.+-.-+ ...+++ .+.+..|.-+|.+..+..++.
T Consensus 66 ~LliGt~-t~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 66 CLLIGTQ-TSLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEEEecc-ceEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCcEEEEEe
Confidence 6777654 459999999876543 23444667777773211 111444 444778888885555544443
No 489
>PRK13613 lipoprotein LpqB; Provisional
Probab=83.57 E-value=1e+02 Score=36.54 Aligned_cols=203 Identities=11% Similarity=0.095 Sum_probs=105.4
Q ss_pred CeEEEEEcCCCCcEEEEEeCCC-eEEEEeccCcce-----eeeeccccCCeEEEEECCCCCEEEEEeC--CC--cEEEEE
Q 001367 844 TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEV-----ISKLEGHSKRVTGLVFSDALNILVSSGG--DA--QIFVWD 913 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg-~i~iwd~~~~~~-----~~~l~~h~~~V~~l~~spdg~~las~s~--Dg--~i~vwd 913 (1091)
.+.+++.++ ++..+|....++ .+++..+..+.. ...+. ....+.-+|.++| .+-+... ++ .+++..
T Consensus 364 ~~~s~avS~-~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 364 PLRRVAVSR-DESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CccceEEcC-CCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCC-CEEEecCCCCCceEEEEEc
Confidence 678999999 777777776665 566655433322 12222 2347778888887 4444422 22 255555
Q ss_pred cCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e---cCeEEEEEcC---Ccc-eeee---eecCCccCEEE
Q 001367 914 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H---ETHLAIYEAE---ELT-CLKQ---WFPISSVPISQ 982 (1091)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~---d~~i~vwd~~---~~~-~~~~---~~~~h~~~v~~ 982 (1091)
- +++... +... ... ...|..+..|+||..+|.- . .++|.|--+. .|+ .+.. +... ...+.+
T Consensus 440 ~-~G~~~~---V~~~-~l~--g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~-l~~v~~ 511 (599)
T PRK13613 440 G-DGEPVE---VRTP-ELD--GHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE-LEDVTD 511 (599)
T ss_pred C-CCcEEE---eecc-ccC--CCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC-CCccce
Confidence 3 333221 2221 100 0269999999999999873 2 2556554332 332 1111 1112 335899
Q ss_pred EEEeeCCCEEEEEE-cCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 983 ATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 983 v~fs~dg~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
+.|..++.+++.+. .++...+|.+.-.-...... ... .-..+..+..+..+ +..++++..++.|... .
T Consensus 512 ~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~----~~~--~v~~~~~ia~~~~~--~~~~v~~~~~~~v~~~---~ 580 (599)
T PRK13613 512 MSWAGDSQLVVLGREEGGVQQARYVQVDGSTPPAS----APA--AVTGVESITASEDE--RLPLVAGTSEDGIVRL---S 580 (599)
T ss_pred eEEcCCCEEEEEeccCCCCcceEEEecCCcCcccc----ccc--CCCCeeEEEecCCC--CceEEEEecCCCeEEe---c
Confidence 99999999877553 33345555543321110100 000 11223334444333 2356654666665433 3
Q ss_pred CCCCcccC
Q 001367 1062 PGDTWAVL 1069 (1091)
Q Consensus 1062 ~~~~~~~~ 1069 (1091)
.+..|...
T Consensus 581 ~g~~W~~~ 588 (599)
T PRK13613 581 SGLQWQTV 588 (599)
T ss_pred CCCcceEe
Confidence 44678754
No 490
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.41 E-value=24 Score=44.52 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCce
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL 370 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~ 370 (1091)
....++|+|..+ ++|.|+..|.|+++-...-+..
T Consensus 37 ~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~~ 70 (993)
T KOG1983|consen 37 TPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEFV 70 (993)
T ss_pred CCcceeeccccc-eEEEEEecccEEEecccceEEE
Confidence 677899999997 8899999999999986544433
No 491
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.30 E-value=7.9 Score=37.53 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.2
Q ss_pred CCeEEEEECCCC------CEEEEEeCCCcEEEEEcCC
Q 001367 886 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 886 ~~V~~l~~spdg------~~las~s~Dg~i~vwd~~~ 916 (1091)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999954 5789999999999998764
No 492
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.27 E-value=26 Score=39.57 Aligned_cols=113 Identities=11% Similarity=0.066 Sum_probs=61.1
Q ss_pred cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC------CEEEEE--e--
Q 001367 885 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H-- 954 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg------~~la~~--~-- 954 (1091)
-...+.|+|.|||++|++--..|.|++++-.++.......+...... ........++|+|+- .+|.++ .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~-~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVND-AQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceecc-CCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 34578899999998888765579999998665432111111111000 012468899999874 344432 1
Q ss_pred -------cCeEEEEEcCCc--c--eeeeeecC----CccCEEEEEEeeCCCEEEEEEcC
Q 001367 955 -------ETHLAIYEAEEL--T--CLKQWFPI----SSVPISQATFSCDCRMVFTSFVD 998 (1091)
Q Consensus 955 -------d~~i~vwd~~~~--~--~~~~~~~~----h~~~v~~v~fs~dg~~l~t~~~d 998 (1091)
...|.-|.+... . ....++.+ ....-..|+|.|||.++++.+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 223444554321 0 01111211 01224567899999877766544
No 493
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.42 E-value=83 Score=34.59 Aligned_cols=188 Identities=13% Similarity=0.145 Sum_probs=101.0
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec--ccCCceE--EEEEec-C---CeEEEEecCCCCcee-eecC
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHF--IFSISV-D---GKIKAWLYDSLGARV-DYDA 527 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~--l~s~~~-d---g~i~iwd~~~~~~~~-~~~~ 527 (1091)
+++....++-+.+||+. |+.++.+. .+..+.+... ..-++.. |+.++. + ..|++|.++...... .+..
T Consensus 70 lIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 67777778889999965 55666663 2333433321 1112222 334432 2 469999887533222 2221
Q ss_pred -------CCCcEEEEEE--cC-CCCEEEEEecCCCCceEEEEEecC---Cc----eeeEEEecccccccceEEEEEcCCC
Q 001367 528 -------PGLGCTRMAY--SA-NGRRLFSCGTSKEGESFLVEWNES---EG----AIKRTYQGLQLQHNSVSVVHFDTAK 590 (1091)
Q Consensus 528 -------~~~~i~~~~~--s~-d~~~l~~~~~~~~~~~~i~iwd~~---~~----~~~~~~~~~~~~~~~v~~v~~~~~~ 590 (1091)
....++.+|+ ++ +|.+.+.... + ++.+..|-+. .+ +.++.|... ..+..|......
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDET 219 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETTT
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEeccc
Confidence 1123666776 33 4555444432 2 3445555443 33 467777663 368888888888
Q ss_pred CEEEEEeCCCeEEEEECCC-----CeeEEEEeCCCCCCCCceEEEc--cCC-CEEEEEE-CCCeEEEEECCCC
Q 001367 591 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFN--KNG-TLLAVIA-NENRIKILETPES 654 (1091)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s--~~~-~~l~~~~-~dg~i~iwd~~~~ 654 (1091)
.+|+.+-++.-|.-|+.+. ++.+.......-...+-.+++- .++ .+|++.+ .+++..+|+....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999888888762 2233332222223456666653 333 3454444 4788999998753
No 494
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=81.71 E-value=1.2e+02 Score=35.93 Aligned_cols=243 Identities=13% Similarity=0.200 Sum_probs=126.3
Q ss_pred EecCCCCEEEEEe-CCeEEEEEcc-CceeEEEecC-CCCCeEEEEEcCC--CCcEEEEEeCCC-eEEEEeccCc------
Q 001367 808 ALSKNDAYLFSAS-GGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPH--DNNVIAIGMDDS-TILIYNARSS------ 875 (1091)
Q Consensus 808 ~~s~dg~~la~~~-dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~--~~~~la~g~~dg-~i~iwd~~~~------ 875 (1091)
.++|+...+-.|= ...|.-|-+. |.+.+..+.- +...|.||..-.. +.++.++|-.++ .-++-.+..+
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~ 113 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTED 113 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccc
Confidence 5677777776664 4445555444 5566666543 4456777765431 134566665554 3344433322
Q ss_pred -----ce--eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCC-cCCCCCceEEEEcCCC
Q 001367 876 -----EV--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV-MTLAPSETHIQFHKDQ 947 (1091)
Q Consensus 876 -----~~--~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~fs~dg 947 (1091)
+. ...+. -.++|.++.|.++++.++..-..|.|.+||.+.+.......+...... ..+..-|.....-...
T Consensus 114 ~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~ 192 (670)
T PF10395_consen 114 GTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGK 192 (670)
T ss_pred cccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCC
Confidence 11 11222 356799999999999999999999999999944332221111111111 0000111111111223
Q ss_pred CEEEE-Ee-cC---eEEEEEcC-Ccceeeeee--cCCccCEEEEEEee-CCCEEEEEEcCCcEEEEeCCCCceEEEeecc
Q 001367 948 TRFLL-VH-ET---HLAIYEAE-ELTCLKQWF--PISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILST 1018 (1091)
Q Consensus 948 ~~la~-~~-d~---~i~vwd~~-~~~~~~~~~--~~h~~~v~~v~fs~-dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~ 1018 (1091)
.++++ +. ++ ..+++.+. ....+..+. ..+........|+. +|.+..- .+++|.+|+++..+....+...
T Consensus 193 ~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~ 270 (670)
T PF10395_consen 193 DLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLP 270 (670)
T ss_pred ceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEec
Confidence 44444 33 22 47788771 122222211 11122333334443 5554333 6789999999999888887755
Q ss_pred cccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecC
Q 001367 1019 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1019 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
....... ..+.++ .+.+| .+.|++ .++.|++.|+.
T Consensus 271 ~ii~~~~--~~~vSl-~~~s~--nRvLLs--~~nkIyLld~~ 305 (670)
T PF10395_consen 271 SIIDKES--DDLVSL-KPPSP--NRVLLS--VNNKIYLLDLK 305 (670)
T ss_pred hhhcccc--ccceEe-ecCCC--CeEEEE--cCCEEEEEeeh
Confidence 4444431 222222 22333 344443 36889999974
No 495
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=81.21 E-value=1.2e+02 Score=35.59 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=61.5
Q ss_pred cCCceEEEEEecCCeEEEEecCCCCc--eeeecCC-CCcEEEEEEcCCC-CEEEEEecCCCCceEEEEEecCCceeeEEE
Q 001367 496 KENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAP-GLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~-~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1091)
..++..++.+..+|.+....+..... ....-+. .....++++..+| .+++.++.. |++.+..|....-+.+..+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~--gds~l~~~~~~~l~~~~~~ 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF--GDSQLLQISLSNLEVLDSL 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS--S-EEEEEEESESEEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec--CCcEEEEEeCCCcEEEEec
Confidence 45667888999999998887765442 1222222 3345566666555 466777664 4678888886666667666
Q ss_pred ecccccccceEEEEEcCC----CC------EEEEEe---CCCeEEEEE
Q 001367 572 QGLQLQHNSVSVVHFDTA----KD------QILAAG---DDHVIKIWD 606 (1091)
Q Consensus 572 ~~~~~~~~~v~~v~~~~~----~~------~l~~~s---~dg~i~iwd 606 (1091)
... ++|..+++.+. .. .+++++ .+|.+++..
T Consensus 297 ~N~----~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 297 PNW----GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp --------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred cCc----CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 654 47888777532 22 566654 567788774
No 496
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.19 E-value=32 Score=38.18 Aligned_cols=141 Identities=12% Similarity=0.199 Sum_probs=84.7
Q ss_pred CCcEEE-EEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCC--------CEEEEEeCCCcEEEEEcCCCceeeeee
Q 001367 854 DNNVIA-IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL--------NILVSSGGDAQIFVWDVDGWGIQTCRS 924 (1091)
Q Consensus 854 ~~~~la-~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg--------~~las~s~Dg~i~vwd~~~~~~~~~~~ 924 (1091)
+..+|. .|.....++--|+..|+.+..+.-|... -+.|.|+. +.|+-.|..+ |.--|-.-.. .....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~g-NKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARG-NKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc-eEEecccccC-Cceee
Confidence 555544 4555567888899999999999888774 46777753 3455444433 3333332211 00011
Q ss_pred eeccCCCcCCCCCceEEEEcC----CCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCC
Q 001367 925 LQTPDGVMTLAPSETHIQFHK----DQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 999 (1091)
Q Consensus 925 ~~~~~~~~~~~~~i~~l~fs~----dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg 999 (1091)
.+... ..+.-.||. ...++|+ +..|.|++||-- |..-...+++-...|..+..+.+|+++++.+. .
T Consensus 554 ~esKd-------Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~ 624 (776)
T COG5167 554 VESKD-------YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCK-N 624 (776)
T ss_pred eeehh-------ccccccccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeec-c
Confidence 11110 122223333 3456666 677899999954 44444456666889999999999999887665 4
Q ss_pred cEEEEeCC
Q 001367 1000 TLSIHEAS 1007 (1091)
Q Consensus 1000 ~v~iwd~~ 1007 (1091)
++.+-|+.
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 67777765
No 497
>PRK13615 lipoprotein LpqB; Provisional
Probab=81.02 E-value=1.2e+02 Score=35.64 Aligned_cols=151 Identities=8% Similarity=0.010 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-Cceeeee
Q 001367 845 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCR 923 (1091)
Q Consensus 845 i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~-~~~~~~~ 923 (1091)
..+++.++ ++..+|....++.++++... +.....+. ...++.-+|.++| .+-++-.+...++..... ++..
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~--- 407 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH--- 407 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE---
Confidence 37889999 78888888778888887655 22222222 2347777888887 555554444455555433 2211
Q ss_pred eeeccCCCcCCCCCceEEEEcCCCCEEEEEe----cCeEEEEEcCC-cc---ee----eeeecCCccCEEEEEEeeCCCE
Q 001367 924 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEE-LT---CL----KQWFPISSVPISQATFSCDCRM 991 (1091)
Q Consensus 924 ~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~----d~~i~vwd~~~-~~---~~----~~~~~~h~~~v~~v~fs~dg~~ 991 (1091)
.+... .. ....|..+..|+||..+|.-. .++|.|--+.. +. .+ ..+..+ ...+.++.|..++..
T Consensus 408 ~v~v~-~~--~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~l 483 (557)
T PRK13615 408 PVAVS-WT--ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PGTPLDATWVDELDV 483 (557)
T ss_pred Eeecc-cc--CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cCcceeeEEcCCCEE
Confidence 11111 11 113699999999999998732 25666543322 22 22 111112 348899999999987
Q ss_pred EEEEE---cCCcEEEEeCC
Q 001367 992 VFTSF---VDGTLSIHEAS 1007 (1091)
Q Consensus 992 l~t~~---~dg~v~iwd~~ 1007 (1091)
++.+. .+..+++..+.
T Consensus 484 aVl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 484 ATLTLAPDGERQVELHQVG 502 (557)
T ss_pred EEEeccCCCCceEEEEECC
Confidence 66552 23456666665
No 498
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=80.72 E-value=80 Score=34.40 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=53.9
Q ss_pred CCCEEEEEe-C-----CeEEEEEccCcee---EEEecCCC-C-CeEEEEEcCCCCcEEEEEeCC-----CeEEEEeccCc
Q 001367 812 NDAYLFSAS-G-----GVISLYIVMTFKT---ILTIMPPS-P-TATSLAFNPHDNNVIAIGMDD-----STILIYNARSS 875 (1091)
Q Consensus 812 dg~~la~~~-d-----g~i~iwd~~~~~~---~~~~~~~~-~-~i~~l~~s~~~~~~la~g~~d-----g~i~iwd~~~~ 875 (1091)
++++++.|+ + ..+..+|+.+.+- ...+..-. . .-.+++.. ++++.+.|+.. ..+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 555656654 2 3577777766542 12221111 1 11222222 56777777642 36888898876
Q ss_pred cee--eeeccccCCeEEEEECCCCCEEEEEeCCCc----EEEEEcCCCc
Q 001367 876 EVI--SKLEGHSKRVTGLVFSDALNILVSSGGDAQ----IFVWDVDGWG 918 (1091)
Q Consensus 876 ~~~--~~l~~h~~~V~~l~~spdg~~las~s~Dg~----i~vwd~~~~~ 918 (1091)
+-. ..+... ......+...++++.+.|+.++. +.+||.++.+
T Consensus 150 ~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 150 EWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 432 222211 12222333446778888877643 5678888755
No 499
>PRK13613 lipoprotein LpqB; Provisional
Probab=80.46 E-value=1e+02 Score=36.56 Aligned_cols=190 Identities=9% Similarity=0.016 Sum_probs=99.1
Q ss_pred CeeEEEecCCCCEEEEEeC-C-eEEEEEccCcee----EEEecCCCCCeEEEEEcCCCCcEEEEEeC--CC--eEEEEec
Q 001367 803 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYNA 872 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~d-g-~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~~la~g~~--dg--~i~iwd~ 872 (1091)
.+.+.++|+++..+|...+ + .+.+..+..+.. ..... .....+.-.|.+ ++ .+-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CC-CEEEecCCCCCceEEEEEcC
Confidence 6778999999999887763 3 466655433322 11111 123466667777 44 3333322 22 2555543
Q ss_pred cCcceeee-eccccC-CeEEEEECCCCCEEEEEeC---CCcEEEEEcCC---CceeeeeeeeccCCCcCCCCCceEEEEc
Q 001367 873 RSSEVISK-LEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFH 944 (1091)
Q Consensus 873 ~~~~~~~~-l~~h~~-~V~~l~~spdg~~las~s~---Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~fs 944 (1091)
+|+.... .....+ .|+.+..|+||..+|.... .+.|.|=-+.. +.......+....+. ..+.+++|.
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W~ 515 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSWA 515 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEEc
Confidence 4443210 112223 7999999999988776543 35566554433 221111111111121 248899999
Q ss_pred CCCCEEEEE--ecCe--EEEEEcCCcceeeeeecCCccCEEEEEEeeCCC-EEEEEEcCCcE
Q 001367 945 KDQTRFLLV--HETH--LAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 1001 (1091)
Q Consensus 945 ~dg~~la~~--~d~~--i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~-~l~t~~~dg~v 1001 (1091)
.++.+++.+ .++. +...++.....-.. ..+.-..+..|+-..+.. .++.+..++.|
T Consensus 516 ~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~-~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 516 GDSQLVVLGREEGGVQQARYVQVDGSTPPAS-APAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CCCEEEEEeccCCCCcceEEEecCCcCcccc-cccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 999988854 2323 44444442222111 112344566677766655 44442455554
No 500
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=80.25 E-value=1.2e+02 Score=35.09 Aligned_cols=192 Identities=12% Similarity=0.151 Sum_probs=90.7
Q ss_pred eEEEEe---eCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCc-
Q 001367 456 ISVITC---GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG- 531 (1091)
Q Consensus 456 ~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~- 531 (1091)
+++++. ...+...+.| ..|.....+......... |...++|.+++... +.+..+|+. ++...........
T Consensus 116 l~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY 189 (477)
T ss_dssp EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred EEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccc
Confidence 355555 3455677777 556666555432222211 22345776665544 777777775 3333333333321
Q ss_pred --EEEEEEcCCCCEEEEEec---------CCCCceEEEEEecCCceeeEEEecccc------------------------
Q 001367 532 --CTRMAYSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQL------------------------ 576 (1091)
Q Consensus 532 --i~~~~~s~d~~~l~~~~~---------~~~~~~~i~iwd~~~~~~~~~~~~~~~------------------------ 576 (1091)
=..+...|+|++|+.+.. .......|..+| .+|+.+..+.....
T Consensus 190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 235677899999887762 111123466667 77777665432210
Q ss_pred cccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCC-ceEEEcc------------------CCCE
Q 001367 577 QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPEN-PRICFNK------------------NGTL 636 (1091)
Q Consensus 577 ~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~v~~s~------------------~~~~ 636 (1091)
.--.++++.+.+....|+..+ .-..|...|..+++....+..+.....- ....+.| -|++
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH 348 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQH 348 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-E
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccccccc
Confidence 002378899988555555555 4558999999999988888655332111 1111111 2455
Q ss_pred EEEEECCC---eEEEEECCCC
Q 001367 637 LAVIANEN---RIKILETPES 654 (1091)
Q Consensus 637 l~~~~~dg---~i~iwd~~~~ 654 (1091)
-+.-..+| .|.++|-...
T Consensus 349 ~~~~~~~g~~~~l~vFDNg~~ 369 (477)
T PF05935_consen 349 TAHLIPDGPQGNLLVFDNGNG 369 (477)
T ss_dssp EEEE-TTS---SEEEEE--TT
T ss_pred ceEEcCCCCeEEEEEEECCCC
Confidence 56666667 7888876654
Done!