Query 001367
Match_columns 1091
No_of_seqs 953 out of 4661
Neff 10.7
Searched_HMMs 29240
Date Tue Mar 26 00:31:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 5.4E-69 1.9E-73 648.1 76.0 568 326-1005 8-577 (577)
2 2ymu_A WD-40 repeat protein; u 100.0 9.1E-67 3.1E-71 628.7 78.9 565 391-1058 11-577 (577)
3 1nr0_A Actin interacting prote 100.0 1.5E-66 5E-71 626.7 76.0 577 332-1007 16-610 (611)
4 1nr0_A Actin interacting prote 100.0 5.5E-63 1.9E-67 595.5 71.3 567 297-964 23-610 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 7.4E-64 2.5E-68 659.0 61.5 608 326-1007 607-1248(1249)
6 1pgu_A Actin interacting prote 100.0 1.6E-60 5.4E-65 579.6 69.9 558 331-1008 15-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-61 4.9E-66 637.2 65.2 589 391-1061 610-1249(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 2.6E-57 8.9E-62 564.5 68.6 636 329-1066 12-833 (902)
9 1pgu_A Actin interacting prote 100.0 5E-57 1.7E-61 548.8 62.7 554 393-1061 15-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 8.4E-56 2.9E-60 550.9 55.9 595 392-1063 13-785 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 7.2E-48 2.5E-52 484.3 58.9 558 325-1009 4-602 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 2.1E-46 7.1E-51 471.0 56.9 477 392-963 9-502 (814)
13 1vyh_C Platelet-activating fac 100.0 2.5E-45 8.6E-50 418.4 39.7 288 328-651 102-409 (410)
14 1got_B GT-beta; complex (GTP-b 100.0 1.1E-39 3.9E-44 362.0 43.9 296 323-650 44-340 (340)
15 3ow8_A WD repeat-containing pr 100.0 7.8E-40 2.7E-44 359.1 41.1 294 325-652 23-320 (321)
16 2pbi_B Guanine nucleotide-bind 100.0 1.6E-39 5.4E-44 362.4 43.5 298 324-650 54-354 (354)
17 2ynn_A Coatomer subunit beta'; 100.0 4.7E-39 1.6E-43 350.8 40.0 293 325-653 4-302 (304)
18 3frx_A Guanine nucleotide-bind 100.0 1.7E-38 5.7E-43 348.9 41.8 301 325-654 8-318 (319)
19 3iz6_a 40S ribosomal protein R 100.0 3.6E-39 1.2E-43 364.0 34.5 306 324-655 56-377 (380)
20 1vyh_C Platelet-activating fac 100.0 1.7E-38 5.9E-43 361.9 37.8 286 392-714 104-409 (410)
21 1got_B GT-beta; complex (GTP-b 100.0 8.9E-38 3E-42 346.8 41.1 286 392-713 51-340 (340)
22 3ow8_A WD repeat-containing pr 100.0 5.3E-38 1.8E-42 344.5 37.8 288 392-714 28-319 (321)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-37 3.6E-42 346.8 40.4 306 325-658 6-340 (345)
24 4g56_B MGC81050 protein; prote 100.0 1.4E-38 4.7E-43 355.1 32.3 313 700-1063 19-345 (357)
25 4ery_A WD repeat-containing pr 100.0 5.2E-37 1.8E-41 336.8 43.6 295 325-652 14-311 (312)
26 4g56_B MGC81050 protein; prote 100.0 8.1E-38 2.8E-42 348.8 35.4 294 331-654 39-344 (357)
27 4gqb_B Methylosome protein 50; 100.0 3E-37 1E-41 340.8 38.0 299 331-654 27-332 (344)
28 4gqb_B Methylosome protein 50; 100.0 1.2E-37 4E-42 344.1 34.7 296 732-1062 29-332 (344)
29 1r5m_A SIR4-interacting protei 100.0 2.6E-37 8.8E-42 356.3 38.4 341 331-715 42-424 (425)
30 2pbi_B Guanine nucleotide-bind 100.0 1.3E-36 4.5E-41 338.8 40.3 287 392-713 60-354 (354)
31 2hes_X YDR267CP; beta-propelle 100.0 2.2E-36 7.6E-41 333.7 39.9 297 325-653 5-328 (330)
32 2xzm_R RACK1; ribosome, transl 100.0 1.6E-36 5.4E-41 337.3 39.0 302 324-654 11-341 (343)
33 1r5m_A SIR4-interacting protei 100.0 2.2E-36 7.7E-41 348.4 41.3 328 393-916 42-425 (425)
34 1erj_A Transcriptional repress 100.0 2.9E-36 1E-40 341.8 41.3 303 332-653 62-389 (393)
35 2ynn_A Coatomer subunit beta'; 100.0 2E-36 6.8E-41 330.0 38.3 269 391-674 8-280 (304)
36 2pm9_A Protein WEB1, protein t 100.0 1.6E-37 5.3E-42 357.0 30.9 356 335-716 13-414 (416)
37 1k32_A Tricorn protease; prote 100.0 3.1E-35 1.1E-39 376.3 55.1 523 333-1010 13-639 (1045)
38 3iz6_a 40S ribosomal protein R 100.0 3.9E-37 1.3E-41 347.3 31.9 290 392-715 62-374 (380)
39 4aow_A Guanine nucleotide-bind 100.0 1.7E-35 5.8E-40 329.6 43.5 303 325-655 29-339 (340)
40 3frx_A Guanine nucleotide-bind 100.0 1.6E-35 5.4E-40 325.2 42.5 296 391-763 12-316 (319)
41 1gxr_A ESG1, transducin-like e 100.0 8.6E-36 2.9E-40 331.5 40.2 324 333-762 8-335 (337)
42 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-35 3.6E-40 330.7 40.0 298 731-1063 13-337 (345)
43 4ery_A WD repeat-containing pr 100.0 2.1E-35 7.3E-40 324.0 40.3 291 391-715 18-311 (312)
44 1k32_A Tricorn protease; prote 100.0 6.1E-34 2.1E-38 364.4 57.0 529 395-1063 13-639 (1045)
45 2hes_X YDR267CP; beta-propelle 100.0 1.3E-34 4.5E-39 319.5 42.2 306 564-1008 3-328 (330)
46 3gre_A Serine/threonine-protei 100.0 9.9E-36 3.4E-40 344.1 34.5 382 341-913 34-437 (437)
47 3vl1_A 26S proteasome regulato 100.0 2.7E-35 9.3E-40 338.7 36.4 347 397-916 57-419 (420)
48 1gxr_A ESG1, transducin-like e 100.0 2.7E-34 9.4E-39 319.4 42.5 320 440-914 8-335 (337)
49 1erj_A Transcriptional repress 100.0 1.1E-34 3.8E-39 328.8 39.2 292 394-715 62-388 (393)
50 3dm0_A Maltose-binding peripla 100.0 1E-34 3.5E-39 355.7 40.9 299 326-652 374-692 (694)
51 2pm9_A Protein WEB1, protein t 100.0 3.5E-36 1.2E-40 345.7 25.9 337 579-1009 13-415 (416)
52 2xzm_R RACK1; ribosome, transl 100.0 3.5E-34 1.2E-38 318.5 40.8 288 390-715 15-339 (343)
53 3vl1_A 26S proteasome regulato 100.0 2.9E-35 9.8E-40 338.4 31.9 332 336-763 58-418 (420)
54 1sq9_A Antiviral protein SKI8; 100.0 2.7E-34 9.3E-39 327.6 38.9 302 325-654 7-396 (397)
55 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.8E-34 2.3E-38 329.2 40.9 322 326-715 110-441 (445)
56 3ei3_B DNA damage-binding prot 100.0 2.9E-34 9.8E-39 325.4 36.9 299 324-653 63-382 (383)
57 3v7d_B Cell division control p 100.0 9.8E-34 3.4E-38 330.2 42.1 304 325-673 112-442 (464)
58 3zwl_B Eukaryotic translation 100.0 1.9E-33 6.4E-38 317.1 42.2 292 326-655 24-348 (369)
59 4aow_A Guanine nucleotide-bind 100.0 1.8E-33 6.2E-38 313.2 41.5 298 562-1010 25-339 (340)
60 2j04_B YDR362CP, TAU91; beta p 100.0 1E-35 3.5E-40 344.9 23.0 342 326-716 126-517 (524)
61 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-33 5.2E-38 309.7 38.3 294 324-659 8-302 (313)
62 3i2n_A WD repeat-containing pr 100.0 5.1E-34 1.8E-38 320.1 34.2 300 323-655 7-355 (357)
63 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.4E-32 4.8E-37 318.1 44.9 317 436-916 113-442 (445)
64 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-34 3.8E-39 336.2 27.0 350 395-874 132-517 (524)
65 3v7d_B Cell division control p 100.0 1.3E-32 4.4E-37 320.7 44.3 347 567-1005 113-460 (464)
66 3gre_A Serine/threonine-protei 100.0 1.7E-33 5.9E-38 325.3 35.6 238 323-620 51-303 (437)
67 3k26_A Polycomb protein EED; W 100.0 1E-33 3.6E-38 318.8 32.4 295 328-652 12-365 (366)
68 4e54_B DNA damage-binding prot 100.0 4.5E-34 1.5E-38 328.9 29.5 304 325-656 110-433 (435)
69 4h5i_A Guanine nucleotide-exch 100.0 1.8E-33 6.2E-38 314.4 31.5 203 800-1009 132-344 (365)
70 1k8k_C P40, ARP2/3 complex 41 100.0 8.7E-33 3E-37 312.0 37.2 291 330-654 4-362 (372)
71 3zwl_B Eukaryotic translation 100.0 3E-32 1E-36 307.1 39.8 289 389-716 25-346 (369)
72 4e54_B DNA damage-binding prot 100.0 3.8E-33 1.3E-37 321.2 32.3 302 569-1012 113-434 (435)
73 3ei3_B DNA damage-binding prot 100.0 1.3E-32 4.4E-37 311.8 35.8 307 559-1008 57-382 (383)
74 4h5i_A Guanine nucleotide-exch 100.0 6.1E-33 2.1E-37 310.1 32.4 298 336-654 16-344 (365)
75 4a11_B DNA excision repair pro 100.0 1.3E-32 4.5E-37 314.9 35.3 348 555-1060 23-404 (408)
76 4aez_A CDC20, WD repeat-contai 100.0 2.5E-32 8.4E-37 311.0 37.2 298 330-660 87-387 (401)
77 4gga_A P55CDC, cell division c 100.0 1.3E-31 4.5E-36 306.9 42.9 289 336-661 107-403 (420)
78 3dwl_C Actin-related protein 2 100.0 7.9E-34 2.7E-38 321.1 23.9 289 330-651 7-377 (377)
79 2pm7_B Protein transport prote 100.0 2.6E-32 8.9E-37 296.3 34.7 254 327-608 2-284 (297)
80 2j04_A TAU60, YPL007P, hypothe 100.0 6E-33 2E-37 310.1 28.9 316 332-753 13-350 (588)
81 1sq9_A Antiviral protein SKI8; 100.0 2E-32 6.7E-37 312.1 33.0 306 390-715 10-394 (397)
82 3dm0_A Maltose-binding peripla 100.0 1.8E-31 6.2E-36 326.9 43.6 212 435-655 376-594 (694)
83 4a11_B DNA excision repair pro 100.0 8.2E-32 2.8E-36 308.3 37.5 347 325-715 34-404 (408)
84 2j04_A TAU60, YPL007P, hypothe 100.0 2.2E-33 7.5E-38 313.5 21.1 331 528-997 14-350 (588)
85 2pm7_B Protein transport prote 100.0 1.2E-31 4.1E-36 291.1 33.9 252 392-653 5-285 (297)
86 1k8k_C P40, ARP2/3 complex 41 100.0 7.1E-32 2.4E-36 304.5 33.1 290 392-716 4-361 (372)
87 4ggc_A P55CDC, cell division c 100.0 1.6E-30 5.4E-35 286.3 42.2 283 336-654 27-316 (318)
88 3dw8_B Serine/threonine-protei 100.0 2.4E-31 8.2E-36 308.5 35.7 301 332-652 26-445 (447)
89 3k26_A Polycomb protein EED; W 100.0 1.1E-31 3.6E-36 302.3 30.9 293 391-715 13-365 (366)
90 3i2n_A WD repeat-containing pr 100.0 2.7E-31 9.1E-36 297.9 34.1 291 390-715 12-352 (357)
91 3bg1_A Protein SEC13 homolog; 100.0 6.1E-32 2.1E-36 296.1 27.7 253 328-608 7-292 (316)
92 3odt_A Protein DOA1; ubiquitin 100.0 1E-30 3.5E-35 287.1 36.6 280 391-717 13-297 (313)
93 1yfq_A Cell cycle arrest prote 100.0 3.8E-31 1.3E-35 294.6 32.9 286 328-650 5-321 (342)
94 3mmy_A MRNA export factor; mRN 100.0 7.5E-31 2.5E-35 295.6 34.6 294 322-651 27-344 (368)
95 3dwl_C Actin-related protein 2 100.0 8.6E-32 2.9E-36 304.4 25.6 242 393-652 8-280 (377)
96 4gga_A P55CDC, cell division c 100.0 1.3E-30 4.4E-35 298.6 35.4 280 398-717 107-396 (420)
97 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-30 4.3E-35 300.5 35.3 279 329-657 128-418 (435)
98 3bg1_A Protein SEC13 homolog; 100.0 4E-31 1.4E-35 289.6 26.6 251 391-653 8-293 (316)
99 2aq5_A Coronin-1A; WD40 repeat 100.0 1.7E-30 5.7E-35 296.2 32.0 298 335-655 35-344 (402)
100 3f3f_A Nucleoporin SEH1; struc 100.0 2.3E-30 7.8E-35 289.2 31.5 307 327-660 4-344 (351)
101 3dw8_B Serine/threonine-protei 100.0 7.7E-30 2.6E-34 295.8 34.8 253 395-657 27-377 (447)
102 4aez_A CDC20, WD repeat-contai 100.0 4.5E-30 1.5E-34 292.3 31.0 283 393-717 88-381 (401)
103 4ggc_A P55CDC, cell division c 100.0 2.1E-29 7E-34 277.4 34.8 277 399-715 28-314 (318)
104 3jrp_A Fusion protein of prote 100.0 9.9E-30 3.4E-34 287.7 32.2 261 326-611 3-289 (379)
105 3jrp_A Fusion protein of prote 100.0 1.2E-29 4.2E-34 286.9 32.5 255 392-656 7-290 (379)
106 3mmy_A MRNA export factor; mRN 100.0 5.9E-29 2E-33 280.0 36.1 290 392-715 35-345 (368)
107 1p22_A F-BOX/WD-repeat protein 100.0 2.7E-29 9.4E-34 289.2 34.0 274 393-717 130-415 (435)
108 1yfq_A Cell cycle arrest prote 100.0 2.5E-29 8.6E-34 279.9 30.9 285 392-714 7-322 (342)
109 3f3f_A Nucleoporin SEH1; struc 100.0 2.3E-29 7.8E-34 281.1 29.9 295 391-717 6-338 (351)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.4E-28 1.2E-32 281.4 37.1 299 336-652 6-390 (450)
111 1l0q_A Surface layer protein; 100.0 2.6E-27 8.7E-32 269.1 43.3 281 347-666 2-288 (391)
112 2w18_A PALB2, fancn, partner a 100.0 2.4E-27 8.3E-32 248.3 37.3 293 444-914 42-355 (356)
113 3vu4_A KMHSV2; beta-propeller 100.0 1.9E-28 6.4E-33 273.0 30.8 283 326-654 11-337 (355)
114 3jro_A Fusion protein of prote 100.0 3.1E-29 1.1E-33 308.2 25.8 260 327-611 2-287 (753)
115 1l0q_A Surface layer protein; 100.0 1.6E-26 5.4E-31 262.6 42.9 328 457-952 4-364 (391)
116 2aq5_A Coronin-1A; WD40 repeat 100.0 2.8E-28 9.6E-33 277.8 28.2 286 397-715 35-341 (402)
117 2w18_A PALB2, fancn, partner a 100.0 1.5E-27 5E-32 250.0 30.8 270 636-1006 56-355 (356)
118 3jro_A Fusion protein of prote 100.0 1.7E-28 5.7E-33 301.7 26.5 254 392-655 5-287 (753)
119 3bws_A Protein LP49; two-domai 100.0 3.6E-26 1.2E-30 263.6 43.8 355 395-916 26-432 (433)
120 2xyi_A Probable histone-bindin 100.0 1.2E-27 4.2E-32 274.5 31.3 265 328-610 122-411 (430)
121 3bws_A Protein LP49; two-domai 100.0 6.9E-27 2.4E-31 269.6 36.7 294 325-652 114-431 (433)
122 3vu4_A KMHSV2; beta-propeller 100.0 4.4E-27 1.5E-31 261.9 32.9 295 392-717 15-337 (355)
123 3lrv_A PRE-mRNA-splicing facto 100.0 2.4E-27 8.1E-32 263.4 29.3 198 800-1009 124-334 (343)
124 2xyi_A Probable histone-bindin 100.0 1.1E-26 3.9E-31 266.5 34.6 254 390-654 122-411 (430)
125 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.7E-27 2.3E-31 270.4 31.7 265 397-675 5-365 (450)
126 1nir_A Nitrite reductase; hemo 100.0 5.1E-26 1.7E-30 266.3 39.0 343 536-973 144-522 (543)
127 3lrv_A PRE-mRNA-splicing facto 100.0 1.7E-27 5.7E-32 264.6 24.8 270 341-652 43-332 (343)
128 4gq1_A NUP37; propeller, trans 100.0 2.5E-27 8.4E-32 268.0 21.7 276 328-651 83-387 (393)
129 1nir_A Nitrite reductase; hemo 99.9 2.4E-25 8.2E-30 260.5 38.5 330 586-1016 145-522 (543)
130 4gq1_A NUP37; propeller, trans 99.9 6E-27 2.1E-31 264.9 18.7 328 336-713 17-386 (393)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.7E-25 1.3E-29 251.5 29.4 307 333-676 61-409 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 1.8E-23 6.3E-28 258.8 36.7 302 334-652 36-412 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.6E-23 5.6E-28 237.9 32.3 306 441-898 62-410 (415)
134 1xfd_A DIP, dipeptidyl aminope 99.9 1.9E-23 6.4E-28 258.0 27.8 311 336-677 18-422 (723)
135 2ecf_A Dipeptidyl peptidase IV 99.9 1.6E-22 5.4E-27 250.4 35.5 331 441-918 36-461 (741)
136 1xfd_A DIP, dipeptidyl aminope 99.9 8.1E-23 2.8E-27 252.3 30.7 385 531-1015 18-450 (723)
137 3u4y_A Uncharacterized protein 99.9 2.1E-21 7.1E-26 214.5 36.4 281 340-654 3-305 (331)
138 2z3z_A Dipeptidyl aminopeptida 99.9 9E-21 3.1E-25 233.1 37.9 238 399-652 28-341 (706)
139 1ri6_A Putative isomerase YBHE 99.9 2.3E-20 7.8E-25 207.3 37.4 276 346-652 4-307 (343)
140 3vgz_A Uncharacterized protein 99.9 1E-20 3.4E-25 211.3 33.8 274 335-644 41-335 (353)
141 2z3z_A Dipeptidyl aminopeptida 99.9 4.2E-21 1.4E-25 236.1 32.7 324 444-918 28-437 (706)
142 1ri6_A Putative isomerase YBHE 99.9 2.8E-20 9.5E-25 206.7 32.3 282 699-1011 7-313 (343)
143 3u4y_A Uncharacterized protein 99.9 8.5E-20 2.9E-24 201.6 35.3 284 740-1063 4-306 (331)
144 1pby_B Quinohemoprotein amine 99.9 5.3E-20 1.8E-24 203.8 33.4 279 591-1016 2-318 (337)
145 1pby_B Quinohemoprotein amine 99.9 4.1E-20 1.4E-24 204.7 30.6 280 349-662 3-319 (337)
146 2ojh_A Uncharacterized protein 99.9 1.6E-20 5.6E-25 203.5 25.5 258 351-644 16-293 (297)
147 1z68_A Fibroblast activation p 99.9 1.5E-20 5E-25 231.6 25.4 377 534-1016 20-451 (719)
148 3vgz_A Uncharacterized protein 99.9 6.3E-19 2.2E-23 196.6 35.9 261 396-672 40-321 (353)
149 1z68_A Fibroblast activation p 99.8 3.7E-20 1.3E-24 228.0 23.4 279 338-653 19-391 (719)
150 3o4h_A Acylamino-acid-releasin 99.8 5.3E-20 1.8E-24 220.3 23.6 273 334-653 21-315 (582)
151 2ojh_A Uncharacterized protein 99.8 2.5E-19 8.7E-24 194.1 26.2 243 326-600 33-293 (297)
152 3hfq_A Uncharacterized protein 99.8 1E-18 3.6E-23 194.2 31.1 277 706-1012 15-323 (347)
153 4a5s_A Dipeptidyl peptidase 4 99.8 7E-19 2.4E-23 216.2 30.5 363 335-762 17-447 (740)
154 3scy_A Hypothetical bacterial 99.8 1.5E-17 5E-22 186.0 38.4 299 343-672 10-359 (361)
155 3pe7_A Oligogalacturonate lyas 99.8 7.3E-19 2.5E-23 199.0 27.9 306 320-651 16-380 (388)
156 3hfq_A Uncharacterized protein 99.8 1.4E-17 4.9E-22 185.0 37.3 251 395-656 38-322 (347)
157 3scy_A Hypothetical bacterial 99.8 4.7E-17 1.6E-21 181.8 41.7 310 539-986 11-360 (361)
158 2oit_A Nucleoporin 214KDA; NH2 99.8 6.1E-19 2.1E-23 200.6 26.5 268 801-1082 36-354 (434)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 2.3E-18 8E-23 195.8 30.2 263 334-607 36-331 (434)
160 1jmx_B Amine dehydrogenase; ox 99.8 4.3E-18 1.5E-22 189.4 30.9 282 338-661 3-333 (349)
161 3o4h_A Acylamino-acid-releasin 99.8 4E-19 1.4E-23 212.6 24.0 252 396-672 21-290 (582)
162 4a5s_A Dipeptidyl peptidase 4 99.8 1.4E-17 4.8E-22 204.7 38.3 364 580-1016 18-457 (740)
163 1jmx_B Amine dehydrogenase; ox 99.8 1.2E-17 3.9E-22 186.0 32.7 299 584-1016 5-333 (349)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.8E-17 1.6E-21 181.7 32.1 249 802-1062 40-342 (365)
165 3pe7_A Oligogalacturonate lyas 99.8 6.1E-18 2.1E-22 191.4 24.9 294 392-715 26-381 (388)
166 2oiz_A Aromatic amine dehydrog 99.8 2E-16 6.9E-21 175.4 32.5 297 344-676 13-359 (361)
167 3c5m_A Oligogalacturonate lyas 99.8 5.4E-17 1.8E-21 184.1 27.8 298 324-654 20-385 (396)
168 2oiz_A Aromatic amine dehydrog 99.8 5.7E-16 1.9E-20 171.7 34.1 304 507-898 29-360 (361)
169 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.9E-16 6.5E-21 176.8 30.4 250 395-654 38-342 (365)
170 1qks_A Cytochrome CD1 nitrite 99.7 1.9E-14 6.6E-19 167.1 40.1 329 554-973 176-546 (567)
171 3azo_A Aminopeptidase; POP fam 99.7 7.7E-16 2.6E-20 187.5 28.4 294 328-657 17-373 (662)
172 1qks_A Cytochrome CD1 nitrite 99.7 1.2E-13 4E-18 160.6 41.6 325 588-1016 165-546 (567)
173 2gop_A Trilobed protease; beta 99.7 4.8E-15 1.7E-19 164.5 28.0 262 336-652 16-330 (347)
174 3c5m_A Oligogalacturonate lyas 99.7 7.7E-16 2.6E-20 174.5 20.9 244 399-656 38-332 (396)
175 3azo_A Aminopeptidase; POP fam 99.7 1.5E-14 5E-19 176.2 32.6 250 391-650 18-320 (662)
176 3fvz_A Peptidyl-glycine alpha- 99.7 1.6E-14 5.3E-19 158.4 29.3 249 801-1062 23-323 (329)
177 3fvz_A Peptidyl-glycine alpha- 99.7 1.9E-14 6.5E-19 157.8 28.9 248 335-609 24-322 (329)
178 1q7f_A NHL, brain tumor CG1071 99.7 6.2E-14 2.1E-18 150.6 32.3 241 800-1062 28-281 (286)
179 4a2l_A BT_4663, two-component 99.7 6E-10 2E-14 137.9 71.4 587 335-1061 43-659 (795)
180 4a2l_A BT_4663, two-component 99.7 2.8E-10 9.6E-15 140.8 67.9 534 335-1006 88-657 (795)
181 1q7f_A NHL, brain tumor CG1071 99.6 2.2E-13 7.5E-18 146.3 33.3 248 331-610 26-281 (286)
182 2dg1_A DRP35, lactonase; beta 99.6 1.8E-13 6E-18 150.8 30.2 274 335-644 6-301 (333)
183 2xdw_A Prolyl endopeptidase; a 99.6 1.5E-13 5E-18 168.1 32.6 250 394-655 122-416 (710)
184 3v9f_A Two-component system se 99.6 5E-09 1.7E-13 129.3 71.0 590 335-1061 19-656 (781)
185 3e5z_A Putative gluconolactona 99.6 4.3E-13 1.5E-17 144.7 30.2 249 325-612 18-289 (296)
186 2xdw_A Prolyl endopeptidase; a 99.6 1.4E-13 4.8E-18 168.3 28.0 249 332-611 122-416 (710)
187 2mad_H Methylamine dehydrogena 99.6 1.4E-11 4.7E-16 136.2 38.3 203 805-1015 128-357 (373)
188 2bkl_A Prolyl endopeptidase; m 99.6 4.4E-13 1.5E-17 163.3 28.9 247 393-655 117-399 (695)
189 3sjl_D Methylamine dehydrogena 99.6 2.9E-12 9.8E-17 138.8 31.8 204 804-1016 139-371 (386)
190 3dsm_A Uncharacterized protein 99.6 5.4E-13 1.8E-17 145.8 26.3 278 355-661 15-309 (328)
191 3no2_A Uncharacterized protein 99.6 2.6E-12 8.9E-17 135.7 30.1 245 349-629 7-272 (276)
192 2z2n_A Virginiamycin B lyase; 99.6 2.3E-11 7.8E-16 131.4 38.5 285 330-654 10-296 (299)
193 2mad_H Methylamine dehydrogena 99.6 1.6E-11 5.6E-16 135.6 37.7 281 341-659 27-356 (373)
194 2dg1_A DRP35, lactonase; beta 99.5 6.7E-13 2.3E-17 146.1 26.1 260 397-672 6-287 (333)
195 3sjl_D Methylamine dehydrogena 99.5 7.7E-13 2.6E-17 143.2 25.5 287 340-663 38-373 (386)
196 3v9f_A Two-component system se 99.5 7.6E-09 2.6E-13 127.7 64.1 536 336-1007 67-655 (781)
197 3e5z_A Putative gluconolactona 99.5 3.2E-12 1.1E-16 137.8 29.4 238 392-654 23-287 (296)
198 3dsm_A Uncharacterized protein 99.5 2.1E-12 7.1E-17 141.1 28.1 272 705-1016 15-309 (328)
199 2gop_A Trilobed protease; beta 99.5 9.2E-13 3.1E-17 146.0 25.4 241 397-673 15-310 (347)
200 2z2n_A Virginiamycin B lyase; 99.5 1.1E-10 3.9E-15 125.8 40.4 236 734-1010 57-297 (299)
201 2bkl_A Prolyl endopeptidase; m 99.5 4E-13 1.4E-17 163.7 23.3 249 332-612 118-400 (695)
202 3no2_A Uncharacterized protein 99.5 3.5E-12 1.2E-16 134.7 26.4 222 812-1049 4-231 (276)
203 1rwi_B Serine/threonine-protei 99.5 3.1E-12 1.1E-16 135.9 24.6 241 336-612 25-267 (270)
204 1yr2_A Prolyl oligopeptidase; 99.5 2.3E-12 7.8E-17 158.1 26.9 247 394-655 160-443 (741)
205 3c75_H MADH, methylamine dehyd 99.5 1.4E-11 4.8E-16 136.2 30.4 205 805-1015 180-409 (426)
206 2qc5_A Streptogramin B lactona 99.5 2.6E-10 8.8E-15 123.1 38.3 280 332-651 17-298 (300)
207 1rwi_B Serine/threonine-protei 99.5 9E-12 3.1E-16 132.3 25.8 240 398-655 25-266 (270)
208 3c75_H MADH, methylamine dehyd 99.4 1.3E-11 4.6E-16 136.3 25.6 281 344-660 82-409 (426)
209 1yr2_A Prolyl oligopeptidase; 99.4 7.4E-12 2.5E-16 153.6 24.3 248 332-612 160-444 (741)
210 2qc5_A Streptogramin B lactona 99.4 1.2E-09 4.1E-14 117.7 37.5 277 732-1059 18-298 (300)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.6E-10 5.6E-15 125.6 28.4 250 331-609 14-299 (314)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.9E-10 6.5E-15 125.1 28.1 245 734-1008 18-299 (314)
213 1xip_A Nucleoporin NUP159; bet 99.3 2.6E-10 8.9E-15 124.2 27.6 174 802-996 38-232 (388)
214 3hrp_A Uncharacterized protein 99.3 6.2E-10 2.1E-14 124.9 31.5 242 335-607 131-408 (409)
215 3iuj_A Prolyl endopeptidase; h 99.3 2.8E-10 9.7E-15 138.0 28.2 252 332-613 126-409 (693)
216 3g4e_A Regucalcin; six bladed 99.3 1.4E-09 4.6E-14 116.9 29.7 228 735-997 14-261 (297)
217 3g4e_A Regucalcin; six bladed 99.3 1E-09 3.5E-14 117.9 28.2 233 331-598 9-261 (297)
218 3dr2_A Exported gluconolactona 99.3 7E-10 2.4E-14 119.8 26.7 240 324-602 34-300 (305)
219 3hrp_A Uncharacterized protein 99.3 1.7E-09 5.8E-14 121.4 30.5 249 802-1059 131-408 (409)
220 2qe8_A Uncharacterized protein 99.3 1.3E-10 4.5E-15 127.8 20.9 272 335-645 17-313 (343)
221 1mda_H Methylamine dehydrogena 99.3 1.5E-10 5.2E-15 125.9 20.7 196 805-1016 127-354 (368)
222 4a0p_A LRP6, LRP-6, low-densit 99.3 1.2E-05 4.2E-10 94.5 65.9 522 410-1015 8-556 (628)
223 3iuj_A Prolyl endopeptidase; h 99.2 3.3E-10 1.1E-14 137.4 24.2 245 394-655 126-407 (693)
224 1mda_H Methylamine dehydrogena 99.2 3.8E-10 1.3E-14 122.8 20.7 272 348-663 33-356 (368)
225 3s94_A LRP-6, low-density lipo 99.2 1.3E-05 4.4E-10 94.2 60.1 520 417-1009 17-552 (619)
226 2qe8_A Uncharacterized protein 99.2 9.9E-10 3.4E-14 120.7 22.5 269 734-1054 17-314 (343)
227 2ghs_A AGR_C_1268P; regucalcin 99.2 8.3E-09 2.8E-13 112.3 28.5 224 336-598 50-291 (326)
228 1xip_A Nucleoporin NUP159; bet 99.2 7.8E-10 2.7E-14 120.4 19.8 186 735-952 39-230 (388)
229 2ghs_A AGR_C_1268P; regucalcin 99.2 1.4E-08 4.7E-13 110.6 29.3 225 736-998 51-292 (326)
230 1kb0_A Quinohemoprotein alcoho 99.1 1.6E-08 5.3E-13 121.2 31.0 228 821-1061 189-567 (677)
231 3dr2_A Exported gluconolactona 99.1 1.3E-08 4.4E-13 109.8 27.1 232 394-645 42-299 (305)
232 1kb0_A Quinohemoprotein alcoho 99.1 1.5E-08 5.3E-13 121.2 30.4 331 501-902 79-536 (677)
233 3q7m_A Lipoprotein YFGL, BAMB; 99.1 3.6E-08 1.2E-12 110.1 31.5 151 457-619 55-217 (376)
234 1yiq_A Quinohemoprotein alcoho 99.1 3.2E-08 1.1E-12 118.8 30.7 326 500-901 71-533 (689)
235 3hxj_A Pyrrolo-quinoline quino 99.1 7.1E-09 2.4E-13 113.5 22.6 301 446-916 24-324 (330)
236 3q7m_A Lipoprotein YFGL, BAMB; 99.1 8.9E-08 3E-12 106.8 31.6 277 350-662 56-346 (376)
237 2ece_A 462AA long hypothetical 99.1 2.5E-08 8.5E-13 108.2 25.1 239 341-597 88-399 (462)
238 2ece_A 462AA long hypothetical 99.1 1.2E-07 4.1E-12 102.9 30.0 232 808-1049 88-399 (462)
239 1yiq_A Quinohemoprotein alcoho 99.0 2.6E-08 9E-13 119.5 27.3 291 350-664 73-516 (689)
240 1fwx_A Nitrous oxide reductase 99.0 2.1E-08 7.1E-13 113.0 24.0 273 539-919 99-434 (595)
241 3hxj_A Pyrrolo-quinoline quino 99.0 1.2E-08 4E-13 111.8 21.2 269 338-661 23-291 (330)
242 3s94_A LRP-6, low-density lipo 99.0 0.00012 4E-09 86.1 56.4 477 464-1010 17-512 (619)
243 2hz6_A Endoplasmic reticulum t 99.0 1.2E-09 4E-14 121.0 10.6 191 407-618 8-201 (369)
244 3ei3_A DNA damage-binding prot 98.9 0.00065 2.2E-08 85.4 63.6 604 326-1006 367-1060(1158)
245 2hz6_A Endoplasmic reticulum t 98.9 5.7E-10 1.9E-14 123.6 5.0 191 854-1069 8-200 (369)
246 1fwx_A Nitrous oxide reductase 98.9 7.9E-08 2.7E-12 108.3 20.7 235 811-1063 99-433 (595)
247 3ei3_A DNA damage-binding prot 98.8 0.0011 3.6E-08 83.4 65.9 285 337-652 329-635 (1158)
248 1npe_A Nidogen, entactin; glyc 98.8 8.4E-06 2.9E-10 85.5 34.1 224 397-635 36-263 (267)
249 4a0p_A LRP6, LRP-6, low-densit 98.8 0.00064 2.2E-08 79.9 64.1 527 348-971 8-555 (628)
250 1kv9_A Type II quinohemoprotei 98.8 1.6E-06 5.3E-11 103.8 31.1 201 457-661 68-341 (668)
251 1npe_A Nidogen, entactin; glyc 98.8 1.2E-05 4.2E-10 84.3 34.3 255 409-675 2-261 (267)
252 1kv9_A Type II quinohemoprotei 98.8 3.4E-06 1.2E-10 100.8 32.0 194 821-1017 177-497 (668)
253 2iwa_A Glutamine cyclotransfer 98.8 6.5E-07 2.2E-11 91.5 21.7 199 803-1009 22-238 (266)
254 1w6s_A Methanol dehydrogenase 98.7 8.5E-06 2.9E-10 94.9 31.9 166 847-1016 245-511 (599)
255 2iwa_A Glutamine cyclotransfer 98.7 3E-06 1E-10 86.6 24.2 217 832-1063 9-239 (266)
256 2ad6_A Methanol dehydrogenase 98.7 3.8E-05 1.3E-09 89.7 35.7 196 806-1016 239-502 (571)
257 2ad6_A Methanol dehydrogenase 98.7 2.7E-05 9.3E-10 90.9 34.2 376 457-902 64-523 (571)
258 1w6s_A Methanol dehydrogenase 98.6 2.3E-05 7.8E-10 91.3 31.4 378 457-899 64-529 (599)
259 1flg_A Protein (quinoprotein e 98.6 6.2E-05 2.1E-09 88.0 35.1 377 458-901 71-544 (582)
260 1flg_A Protein (quinoprotein e 98.6 9.9E-05 3.4E-09 86.2 35.2 149 865-1016 291-524 (582)
261 2xe4_A Oligopeptidase B; hydro 98.6 1.2E-05 4E-10 97.9 28.0 248 336-612 175-461 (751)
262 3nol_A Glutamine cyclotransfer 98.5 5E-06 1.7E-10 83.6 19.7 185 803-997 44-244 (262)
263 3ott_A Two-component system se 98.5 0.0071 2.4E-07 73.9 69.3 572 334-1061 21-626 (758)
264 3nol_A Glutamine cyclotransfer 98.5 1.4E-05 4.7E-10 80.4 21.2 184 444-642 45-244 (262)
265 3nok_A Glutaminyl cyclase; bet 98.5 5.7E-06 1.9E-10 83.1 17.8 184 802-997 55-254 (268)
266 2fp8_A Strictosidine synthase; 98.5 9.7E-05 3.3E-09 79.8 29.3 239 803-1063 20-315 (322)
267 2xbg_A YCF48-like protein; pho 98.4 0.00054 1.9E-08 73.8 34.1 279 733-1059 35-320 (327)
268 2fp8_A Strictosidine synthase; 98.4 0.0001 3.6E-09 79.6 28.5 263 330-609 14-313 (322)
269 3mbr_X Glutamine cyclotransfer 98.4 3.5E-05 1.2E-09 76.9 21.5 187 801-997 20-223 (243)
270 2p4o_A Hypothetical protein; p 98.4 0.00013 4.3E-09 78.2 27.5 229 397-644 32-279 (306)
271 2p4o_A Hypothetical protein; p 98.4 0.0001 3.4E-09 79.0 26.7 240 324-600 22-279 (306)
272 1k3i_A Galactose oxidase precu 98.4 2.3E-05 7.8E-10 94.0 23.9 278 339-642 190-530 (656)
273 1k3i_A Galactose oxidase precu 98.4 5.3E-05 1.8E-09 90.9 26.6 121 534-655 190-325 (656)
274 3v64_C Agrin; beta propeller, 98.4 0.0011 3.7E-08 72.1 34.8 249 334-617 33-283 (349)
275 3nok_A Glutaminyl cyclase; bet 98.3 8.2E-05 2.8E-09 74.7 22.4 185 397-598 55-254 (268)
276 3v64_C Agrin; beta propeller, 98.3 0.0012 4.2E-08 71.7 33.6 248 398-661 35-283 (349)
277 3qqz_A Putative uncharacterize 98.3 0.00034 1.2E-08 71.0 26.9 207 328-562 20-251 (255)
278 3v65_B Low-density lipoprotein 98.3 0.00083 2.8E-08 74.2 32.6 248 336-618 78-327 (386)
279 1ijq_A LDL receptor, low-densi 98.3 0.0016 5.4E-08 69.7 33.7 238 410-660 3-245 (316)
280 3v65_B Low-density lipoprotein 98.3 0.00073 2.5E-08 74.7 31.9 257 400-672 80-337 (386)
281 3mbr_X Glutamine cyclotransfer 98.2 0.00026 9E-09 70.6 23.8 188 395-598 19-223 (243)
282 2xe4_A Oligopeptidase B; hydro 98.2 0.00019 6.4E-09 87.3 27.1 246 394-655 170-460 (751)
283 1ijq_A LDL receptor, low-densi 98.2 0.0029 1E-07 67.6 33.0 232 357-617 10-246 (316)
284 4hw6_A Hypothetical protein, I 98.2 0.00043 1.5E-08 77.6 27.3 246 803-1060 140-432 (433)
285 3qqz_A Putative uncharacterize 98.2 0.0013 4.5E-08 66.6 28.1 217 837-1059 21-251 (255)
286 3tc9_A Hypothetical hydrolase; 98.2 0.00052 1.8E-08 77.0 27.9 247 802-1060 137-429 (430)
287 3p5b_L Low density lipoprotein 98.2 0.0026 9.1E-08 70.4 33.2 249 410-671 85-338 (400)
288 3ott_A Two-component system se 98.1 0.04 1.4E-06 67.1 62.8 537 396-1062 21-587 (758)
289 2xbg_A YCF48-like protein; pho 98.1 0.005 1.7E-07 66.2 33.5 281 335-651 36-320 (327)
290 3p5b_L Low density lipoprotein 98.0 0.0049 1.7E-07 68.3 31.9 206 801-1016 111-328 (400)
291 3sov_A LRP-6, low-density lipo 97.9 0.011 3.6E-07 63.1 30.7 233 417-661 12-246 (318)
292 3tc9_A Hypothetical hydrolase; 97.9 0.0054 1.8E-07 68.6 29.6 156 336-518 138-301 (430)
293 3sov_A LRP-6, low-density lipo 97.9 0.013 4.3E-07 62.5 30.6 234 356-618 12-247 (318)
294 4hw6_A Hypothetical protein, I 97.9 0.0037 1.3E-07 69.9 27.0 238 336-608 140-432 (433)
295 3m0c_C LDL receptor, low-densi 97.9 0.013 4.6E-07 70.3 33.1 238 410-661 397-640 (791)
296 3kya_A Putative phosphatase; s 97.8 0.0073 2.5E-07 67.5 28.2 251 803-1062 140-476 (496)
297 3amr_A 3-phytase; beta-propell 97.8 0.0081 2.8E-07 63.1 26.4 197 813-1018 40-274 (355)
298 2xzh_A Clathrin heavy chain 1; 97.8 0.037 1.3E-06 56.8 29.4 235 340-609 72-332 (365)
299 3m0c_C LDL receptor, low-densi 97.7 0.024 8.2E-07 68.1 32.4 215 395-617 422-640 (791)
300 3amr_A 3-phytase; beta-propell 97.7 0.0095 3.2E-07 62.6 24.3 193 457-660 42-271 (355)
301 3kya_A Putative phosphatase; s 97.7 0.025 8.5E-07 63.2 28.8 252 336-613 140-479 (496)
302 1n7d_A LDL receptor, low-densi 97.6 0.0004 1.4E-08 83.1 14.8 234 417-662 385-623 (699)
303 2p9w_A MAL S 1 allergenic prot 97.6 0.012 4.2E-07 61.2 22.8 203 802-1008 13-265 (334)
304 2xzh_A Clathrin heavy chain 1; 97.5 0.11 3.7E-06 53.5 35.2 232 805-1062 70-333 (365)
305 3a9g_A Putative uncharacterize 97.5 0.038 1.3E-06 59.8 27.5 230 802-1049 29-330 (354)
306 1n7d_A LDL receptor, low-densi 97.5 0.00055 1.9E-08 81.9 13.5 205 802-1016 406-622 (699)
307 1bpo_A Protein (clathrin); cla 97.5 0.13 4.4E-06 55.1 29.1 235 340-609 71-331 (494)
308 2ism_A Putative oxidoreductase 97.4 0.032 1.1E-06 60.4 25.8 230 802-1049 31-333 (352)
309 2g8s_A Glucose/sorbosone dehyd 97.4 0.048 1.6E-06 59.0 25.8 238 803-1059 19-350 (353)
310 3ii7_A Kelch-like protein 7; p 97.3 0.018 6.1E-07 61.2 21.3 231 815-1072 14-281 (306)
311 3a9g_A Putative uncharacterize 97.3 0.23 7.8E-06 53.6 30.0 233 334-597 28-330 (354)
312 3pbp_A Nucleoporin NUP82; beta 97.2 0.016 5.3E-07 62.1 19.3 109 806-916 25-158 (452)
313 2ism_A Putative oxidoreductase 97.2 0.15 5.1E-06 55.1 28.0 107 335-461 31-152 (352)
314 1bpo_A Protein (clathrin); cla 97.2 0.33 1.1E-05 52.0 32.5 269 357-659 48-337 (494)
315 2p9w_A MAL S 1 allergenic prot 97.2 0.1 3.5E-06 54.3 24.5 165 331-519 9-216 (334)
316 2xtc_A F-box-like/WD repeat-co 97.2 0.00029 9.9E-09 56.0 3.9 35 1-35 1-35 (90)
317 2xn4_A Kelch-like protein 2; s 97.1 0.05 1.7E-06 57.5 22.6 222 822-1070 30-283 (302)
318 2vpj_A Kelch-like protein 12; 97.1 0.022 7.4E-07 60.4 19.7 224 822-1071 31-286 (301)
319 4asc_A Kelch repeat and BTB do 97.0 0.072 2.5E-06 56.7 22.0 230 820-1074 11-288 (315)
320 2g8s_A Glucose/sorbosone dehyd 96.9 0.3 1E-05 52.7 26.3 242 397-646 18-347 (353)
321 1zgk_A Kelch-like ECH-associat 96.9 0.043 1.5E-06 58.3 19.3 235 810-1071 22-295 (308)
322 2vpj_A Kelch-like protein 12; 96.8 0.052 1.8E-06 57.4 18.9 235 407-655 14-280 (301)
323 3ii7_A Kelch-like protein 7; p 96.8 0.19 6.7E-06 53.0 23.4 235 348-614 13-277 (306)
324 3sre_A PON1, serum paraoxonase 96.7 0.83 2.9E-05 48.7 30.8 208 397-617 50-308 (355)
325 1tl2_A L10, protein (tachylect 96.7 0.022 7.6E-07 54.9 12.9 183 854-1053 3-202 (236)
326 3sre_A PON1, serum paraoxonase 96.6 0.5 1.7E-05 50.4 24.6 157 844-1008 51-252 (355)
327 2xn4_A Kelch-like protein 2; s 96.6 0.11 3.9E-06 54.8 19.8 233 408-655 16-278 (302)
328 3das_A Putative oxidoreductase 96.5 1.1 3.9E-05 47.4 28.6 100 803-904 203-326 (347)
329 1xi4_A Clathrin heavy chain; a 96.5 0.19 6.5E-06 62.3 22.3 233 806-1062 70-332 (1630)
330 3sbq_A Nitrous-oxide reductase 96.4 1.6 5.5E-05 48.4 28.0 113 803-918 324-480 (638)
331 4asc_A Kelch repeat and BTB do 96.3 0.19 6.4E-06 53.4 19.9 230 411-655 8-279 (315)
332 2uvk_A YJHT; unknown function, 96.3 0.31 1.1E-05 52.7 21.5 240 812-1074 19-353 (357)
333 1tl2_A L10, protein (tachylect 96.2 0.096 3.3E-06 50.6 14.0 145 844-1000 42-202 (236)
334 3pbp_A Nucleoporin NUP82; beta 96.1 0.09 3.1E-06 56.4 15.3 124 336-471 67-209 (452)
335 2woz_A Kelch repeat and BTB do 96.0 0.73 2.5E-05 48.8 22.2 224 821-1069 23-293 (318)
336 2be1_A Serine/threonine-protei 96.0 0.05 1.7E-06 57.6 12.4 201 856-1066 11-236 (339)
337 3das_A Putative oxidoreductase 95.7 2.7 9.2E-05 44.5 30.9 122 325-462 22-158 (347)
338 2woz_A Kelch repeat and BTB do 95.7 0.61 2.1E-05 49.4 20.0 224 419-655 25-289 (318)
339 1xi4_A Clathrin heavy chain; a 95.5 0.49 1.7E-05 58.8 19.9 236 341-611 72-333 (1630)
340 1zgk_A Kelch-like ECH-associat 95.3 0.51 1.7E-05 49.8 17.8 187 812-1012 70-291 (308)
341 1uuj_A Platelet-activating fac 95.2 0.014 4.9E-07 46.1 3.6 55 5-59 10-66 (88)
342 1cru_A Protein (soluble quinop 95.1 1.1 3.9E-05 49.8 20.5 161 843-1009 27-260 (454)
343 3sbq_A Nitrous-oxide reductase 95.1 1.8 6E-05 48.1 20.7 195 811-1009 140-409 (638)
344 2uvk_A YJHT; unknown function, 95.0 1.7 6E-05 46.7 21.2 141 865-1013 168-347 (357)
345 3s25_A Hypothetical 7-bladed b 94.9 1.8 6.1E-05 45.1 20.0 180 450-655 22-218 (302)
346 2be1_A Serine/threonine-protei 94.3 0.1 3.4E-06 55.2 8.4 195 457-658 12-236 (339)
347 1cru_A Protein (soluble quinop 94.2 3.7 0.00013 45.7 21.6 110 886-997 27-163 (454)
348 3s25_A Hypothetical 7-bladed b 93.0 9.6 0.00033 39.5 24.1 182 339-566 57-257 (302)
349 2zwa_A Leucine carboxyl methyl 92.8 4.5 0.00015 48.0 20.6 196 811-1012 396-639 (695)
350 2wg3_C Hedgehog-interacting pr 92.3 16 0.00056 40.4 26.0 56 397-452 14-79 (463)
351 3b7f_A Glycosyl hydrolase, BNR 92.1 15 0.00053 39.8 28.2 260 801-1070 54-379 (394)
352 2zwa_A Leucine carboxyl methyl 92.0 3.3 0.00011 49.2 17.9 199 854-1069 397-641 (695)
353 4hvt_A Ritya.17583.B, post-pro 91.0 30 0.001 40.8 27.5 246 338-611 132-431 (711)
354 3qhy_B Beta-lactamase inhibito 90.1 18 0.00062 37.0 20.0 222 336-609 25-246 (282)
355 3qhy_B Beta-lactamase inhibito 89.8 19 0.00066 36.8 20.1 183 803-1008 64-246 (282)
356 3q6k_A 43.2 kDa salivary prote 89.0 27 0.00091 37.3 20.4 167 466-638 124-339 (381)
357 4hvt_A Ritya.17583.B, post-pro 87.4 29 0.001 40.9 20.7 242 401-652 133-429 (711)
358 2j4b_A TAF5, transcription ini 85.2 1.1 3.6E-05 40.0 5.2 56 72-128 33-88 (138)
359 2nxp_A Transcription initiatio 83.6 1.4 4.9E-05 40.3 5.5 58 72-129 52-109 (156)
360 2j49_A Transcription initiatio 77.5 0.83 2.8E-05 41.2 1.6 54 71-125 34-87 (148)
361 3q6k_A 43.2 kDa salivary prote 76.9 82 0.0028 33.5 22.3 170 822-995 123-341 (381)
362 2wg3_C Hedgehog-interacting pr 75.7 1E+02 0.0035 34.0 29.9 105 803-907 15-160 (463)
363 4gq2_M Nucleoporin NUP120; bet 72.8 11 0.00038 46.3 10.6 40 978-1017 236-275 (950)
364 3uc1_A DNA gyrase subunit A; D 70.9 1E+02 0.0035 32.0 27.4 158 801-965 94-279 (327)
365 3kci_A Probable E3 ubiquitin-p 67.1 1.4E+02 0.0047 32.0 25.4 195 803-1008 106-345 (389)
366 4gq2_M Nucleoporin NUP120; bet 65.4 90 0.0031 38.3 16.4 37 844-881 237-273 (950)
367 3kci_A Probable E3 ubiquitin-p 62.9 1.6E+02 0.0056 31.4 29.8 163 735-915 106-292 (389)
368 2zux_A YESW protein; beta-prop 54.8 2.7E+02 0.0091 31.2 27.3 297 333-657 177-536 (591)
369 3f7f_A Nucleoporin NUP120; nuc 54.1 1.3E+02 0.0046 34.8 13.8 35 845-882 224-258 (729)
370 3no0_A DNA gyrase subunit A; D 53.3 1.9E+02 0.0065 29.1 21.1 193 806-1008 29-246 (276)
371 2d68_A FOP, FGFR1OP; alpha hel 53.3 13 0.00045 29.2 3.7 29 7-35 20-48 (82)
372 3b7f_A Glycosyl hydrolase, BNR 53.2 2.3E+02 0.008 30.1 33.3 263 396-672 54-390 (394)
373 1zi0_A DNA gyrase subunit A; b 52.9 2.1E+02 0.0071 29.4 28.8 151 744-916 108-277 (307)
374 3zwu_A Alkaline phosphatase PH 52.3 27 0.00094 39.7 7.9 58 938-995 478-548 (592)
375 4a9v_A PHOX; hydrolase, beta-p 50.1 37 0.0013 38.2 8.2 60 937-996 477-549 (592)
376 2wpv_A GET4, UPF0363 protein Y 50.0 32 0.0011 35.4 7.3 111 38-188 17-128 (312)
377 4d9s_A UVB-resistance protein 49.4 2.7E+02 0.0094 29.8 31.7 198 844-1061 122-357 (406)
378 2k9m_A RNA polymerase sigma fa 48.9 23 0.00077 31.0 5.1 35 3-37 19-54 (130)
379 3mkr_A Coatomer subunit epsilo 48.9 51 0.0018 33.6 9.0 54 6-59 65-126 (291)
380 3f7f_A Nucleoporin NUP120; nuc 48.4 48 0.0017 38.4 9.0 32 986-1017 228-259 (729)
381 4gco_A Protein STI-1; structur 47.7 74 0.0025 27.2 8.6 98 15-119 23-125 (126)
382 3no0_A DNA gyrase subunit A; D 47.7 2.3E+02 0.0079 28.4 21.9 113 801-916 67-196 (276)
383 3mez_B Mannose-specific lectin 45.9 66 0.0023 27.1 7.6 59 939-1008 26-84 (113)
384 4h3o_A Lectin; cadmium, plant 45.3 1.3E+02 0.0045 24.9 10.2 25 805-830 53-77 (105)
385 3lpz_A GET4 (YOR164C homolog); 45.2 47 0.0016 34.4 7.6 112 38-189 16-131 (336)
386 4fhn_B Nucleoporin NUP120; pro 43.3 71 0.0024 40.3 10.5 37 844-881 239-275 (1139)
387 4fhn_B Nucleoporin NUP120; pro 40.3 7.6 0.00026 49.1 1.0 41 979-1019 239-279 (1139)
388 3zwu_A Alkaline phosphatase PH 39.0 96 0.0033 35.3 9.6 64 531-596 477-548 (592)
389 3l6v_A GYRA, DNA gyrase subuni 37.7 3.9E+02 0.013 28.2 28.5 65 587-652 4-75 (370)
390 4ga2_A E3 SUMO-protein ligase 37.1 1.6E+02 0.0053 26.0 9.3 94 21-121 13-111 (150)
391 2cn3_A Xyloglucanase, beta-1,4 35.8 6E+02 0.02 29.8 35.8 61 580-641 24-91 (737)
392 4a9v_A PHOX; hydrolase, beta-p 35.5 1.5E+02 0.0052 33.3 10.2 65 531-597 477-549 (592)
393 3bu8_A Telomeric repeat-bindin 34.6 84 0.0029 29.7 6.6 100 69-189 109-209 (235)
394 1zi0_A DNA gyrase subunit A; b 33.0 4.1E+02 0.014 27.1 28.6 113 801-916 94-226 (307)
395 1suu_A DNA gyrase subunit A; t 32.5 4.2E+02 0.014 27.1 28.5 109 744-874 113-231 (312)
396 2vgx_A Chaperone SYCD; alterna 30.3 1.5E+02 0.0051 26.1 7.9 15 85-99 100-114 (148)
397 2lni_A Stress-induced-phosphop 29.8 1.9E+02 0.0064 24.0 8.5 87 9-101 20-111 (133)
398 4asv_A Small glutamine-rich te 29.4 30 0.001 27.5 2.4 19 1-19 15-33 (92)
399 2xz2_A CSTF-50, isoform B; RNA 28.9 62 0.0021 23.9 3.7 31 4-34 15-45 (66)
400 3u4t_A TPR repeat-containing p 27.0 1.4E+02 0.0049 29.2 8.1 109 7-119 4-118 (272)
401 3uc1_A DNA gyrase subunit A; D 26.3 5.5E+02 0.019 26.4 26.6 160 735-916 96-279 (327)
402 1elw_A TPR1-domain of HOP; HOP 26.2 2.4E+02 0.0083 22.5 8.3 88 9-102 8-100 (118)
403 2k9l_A RNA polymerase sigma fa 24.4 68 0.0023 24.8 3.6 39 3-41 28-68 (76)
404 2kck_A TPR repeat; tetratricop 24.3 1E+02 0.0035 24.7 5.4 54 44-101 50-104 (112)
405 2zux_A YESW protein; beta-prop 24.1 7.9E+02 0.027 27.5 26.7 42 578-619 363-410 (591)
406 4gof_A Small glutamine-rich te 23.6 39 0.0013 23.8 1.8 15 5-19 2-16 (52)
407 3qou_A Protein YBBN; thioredox 23.6 2.4E+02 0.0083 28.3 9.0 99 16-121 128-231 (287)
408 3upv_A Heat shock protein STI1 23.6 1.8E+02 0.0062 24.2 7.0 82 14-101 13-99 (126)
409 1kdl_A YOPD protein; yersinia, 23.5 52 0.0018 18.8 1.9 16 5-20 4-19 (26)
410 2xcb_A PCRH, regulatory protei 23.4 2.2E+02 0.0075 24.5 7.7 13 87-99 65-77 (142)
411 1vk8_A Hypothetical protein TM 23.0 9.4 0.00032 31.8 -1.6 35 25-60 38-72 (106)
412 3mkr_A Coatomer subunit epsilo 22.8 3.7E+02 0.013 26.9 10.3 107 6-120 101-211 (291)
413 1wp5_A Topoisomerase IV; broke 22.0 6.5E+02 0.022 25.8 28.3 148 498-652 4-173 (323)
414 3iug_A RHO/CDC42/RAC GTPase-ac 21.7 58 0.002 31.8 3.5 90 8-105 40-142 (229)
415 1wp5_A Topoisomerase IV; broke 21.5 6.7E+02 0.023 25.7 26.7 197 805-1007 43-276 (323)
416 1elr_A TPR2A-domain of HOP; HO 21.2 2.3E+02 0.0078 23.3 7.2 92 11-102 10-107 (131)
417 1suu_A DNA gyrase subunit A; t 21.1 6.7E+02 0.023 25.5 29.3 156 803-965 48-231 (312)
418 1oyi_A Double-stranded RNA-bin 20.4 66 0.0022 25.3 2.7 30 6-37 16-45 (82)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.4e-69 Score=648.09 Aligned_cols=568 Identities=22% Similarity=0.338 Sum_probs=490.8
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
..+.|.||++.|+|++|||||+ +||+|+.|++|+|||. +++++.. +.+|...|++++|+
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fs 66 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFS 66 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEEC
T ss_pred EeeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEEC
Confidence 3467999999999999999998 6799999999999995 6766654 77999999999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
|||++||+++.|++|+|||.. ++.+ ..+.+|...|.+++|+||++ +|++++.|+.+++|+.. ........+|.
T Consensus 67 pdg~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~ 139 (577)
T 2ymu_A 67 PDGQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHS 139 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCS
T ss_pred CCCCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCC
Confidence 999999999999999999964 4433 36889999999999999999 89999999999999955 45566778899
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
..+..+.+.+ ++..+++++.++.+++|+... ........+...+.++.++|+++++++++. ++.|++||. ++
T Consensus 140 ~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~ 211 (577)
T 2ymu_A 140 SSVWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NG 211 (577)
T ss_dssp SCEEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TS
T ss_pred Cceeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CC
Confidence 9999998854 667899999999999998543 445556677889999999999999999986 667999995 56
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCe
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1091)
+.+..+.+|. ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+.. .|.+++|+|+++.+++++.|+.
T Consensus 212 ~~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~--~v~~v~~~~d~~~l~~~~~d~~ 285 (577)
T 2ymu_A 212 QLLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVNGVAFRPDGQTIASASDDKT 285 (577)
T ss_dssp CEEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSC
T ss_pred cEEEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCC--CEEEEEEcCCCCEEEEEeCCCE
Confidence 7778888877 89999999999999999999999999996 4667777766544 7899999999999999999999
Q ss_pred EEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCccccee
Q 001367 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 725 (1091)
Q Consensus 646 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 725 (1091)
|++|+.. ++....+.+|...|.++++ +|+++.+++++.|+++++|+.... ....
T Consensus 286 i~~w~~~-~~~~~~~~~h~~~v~~~~~---------------------~~~~~~l~t~~~d~~i~~w~~~~~---~~~~- 339 (577)
T 2ymu_A 286 VKLWNRN-GQLLQTLTGHSSSVWGVAF---------------------SPDGQTIASASDDKTVKLWNRNGQ---HLQT- 339 (577)
T ss_dssp EEEEETT-SCEEEEECCCSSCEEEEEE---------------------CTTSSEEEEEETTSCEEEEETTSC---EEEE-
T ss_pred EEEEeCC-CcEEEEEecCCCCeEEEEE---------------------CCCCCEEEEEeCCCeEEEEeCCCC---eeEE-
Confidence 9999964 5677788899999999998 788899999999999999997532 1111
Q ss_pred ecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCee
Q 001367 726 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 805 (1091)
Q Consensus 726 ~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 805 (1091)
+ .+|...+.+++|+|+|+.+++++.+|.+++|+... ..+.... +|...|.
T Consensus 340 -~--~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~~~----~~~~~v~ 389 (577)
T 2ymu_A 340 -L--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQTLT----GHSSSVR 389 (577)
T ss_dssp -E--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEEEEE----CCSSCEE
T ss_pred -E--eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEEec----CCCCCeE
Confidence 1 34788999999999999999999999999998432 1122211 4888999
Q ss_pred EEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccc
Q 001367 806 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 884 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h 884 (1091)
+++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|
T Consensus 390 ~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~ 466 (577)
T 2ymu_A 390 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGH 466 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC
Confidence 999999999999998 799999995 6788888999999999999999 8999999999999999996 56788899999
Q ss_pred cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEc
Q 001367 885 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA 963 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~ 963 (1091)
...|++++|+||+++||+++.|+.|++||... ..++.+.+|.. .|.+++|+|||++||+ +.|+.|++||.
T Consensus 467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~~~------~~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTS------CEEEEEECCSS---CEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC------CEEEEEeCCCC---CEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 99999999999999999999999999999654 23455566665 7999999999999998 57899999996
Q ss_pred CCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 964 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 964 ~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
+++++.. +.+|...|++++|+|||++|+|++.||+|++||
T Consensus 538 -~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 -NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 5777766 568999999999999999999999999999997
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.1e-67 Score=628.70 Aligned_cols=565 Identities=21% Similarity=0.312 Sum_probs=484.7
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
.|.||++.|++++|||||++||+|+.|++|+|||. +++.++ .+.+|.+.|++++|+||++ +|++++.|++|+||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~---~l~gh~~~V~~l~fspdg~--~las~~~d~~i~vW 84 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLW 84 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEE---EEECCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEE---EEeCCCCCEEEEEECCCCC--EEEEEeCCCEEEEE
Confidence 48899999999999999999999999999999995 555443 7889999999999999999 89999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
| .+++++..+.+|...|.+++|+ +++.+|++++.|+.+++|+... ........+...+..+.++|++..++.++.
T Consensus 85 d-~~~~~~~~~~~~~~~v~~~~~s--~d~~~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~- 159 (577)
T 2ymu_A 85 N-RNGQLLQTLTGHSSSVRGVAFS--PDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD- 159 (577)
T ss_dssp E-TTSCEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEET-
T ss_pred E-CCCCEEEEEECCCCCEEEEEEC--CCCCEEEEEcCCCceeeccccc-ceeeeccCCCCceeeeeeecCCccceeccc-
Confidence 9 5688899999999999999995 4778999999999999999654 445566777889999999999999998875
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
+..+.+|+.... .......+. ..+.++.++|+++++++++.|+.|++||. +++.+..+..+.. .|.+++|
T Consensus 160 ---~~~~~~~~~~~~-~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~--~v~~~~~ 229 (577)
T 2ymu_A 160 ---DKTVKLWNRNGQ-LLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVRGVAF 229 (577)
T ss_dssp ---TSEEEEECTTSC-EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS--CEEEEEE
T ss_pred ---ccceecccccee-eeeeccCCC---cceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCC--CEEEEEE
Confidence 566888986544 444555555 78999999999999999999999999996 5677777776654 6899999
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
+|++++|++++.|+.|++|+.. ++.+..+.+|...|.+++| +|+++.+++++.|+.++
T Consensus 230 s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~---------------------~~d~~~l~~~~~d~~i~ 287 (577)
T 2ymu_A 230 SPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAF---------------------RPDGQTIASASDDKTVK 287 (577)
T ss_dssp CTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEE---------------------CTTSSEEEEEETTSCEE
T ss_pred CCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEE---------------------cCCCCEEEEEeCCCEEE
Confidence 9999999999999999999964 5677788899999999998 78889999999999999
Q ss_pred cccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCce
Q 001367 711 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 790 (1091)
Q Consensus 711 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1091)
+|+.... ... ...+|...|.+++|+|+++.+++++.||.+++|+..... +
T Consensus 288 ~w~~~~~---~~~----~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-----------------------~ 337 (577)
T 2ymu_A 288 LWNRNGQ---LLQ----TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-----------------------L 337 (577)
T ss_dssp EEETTSC---EEE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------E
T ss_pred EEeCCCc---EEE----EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------e
Confidence 9996421 111 113588899999999999999999999999999864321 1
Q ss_pred eeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001367 791 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 869 (1091)
Q Consensus 791 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~i 869 (1091)
... .+|...+.+++|+|+|+++++++ ++.|++||. +++.+..+..|...|++++|+| ++++|++++.|+.|++
T Consensus 338 ~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 338 QTL----TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKL 411 (577)
T ss_dssp EEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEE
T ss_pred EEE----eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEE
Confidence 111 14788999999999999999998 799999995 6788888999999999999999 8999999999999999
Q ss_pred EeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCE
Q 001367 870 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 949 (1091)
Q Consensus 870 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 949 (1091)
||. +++.+..+.+|...|++++|+||+++|++++.|++|++||.... .+..+.+|.. .|.+++|+||+++
T Consensus 412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~~ 481 (577)
T 2ymu_A 412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQT 481 (577)
T ss_dssp ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSCE
T ss_pred EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCCE
Confidence 995 57888899999999999999999999999999999999997652 3344455554 7999999999999
Q ss_pred EEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCccc
Q 001367 950 FLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCL 1028 (1091)
Q Consensus 950 la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1091)
|++ +.|+.|++||. +++++.. +.+|...|++++|+|||++|++++.||.|++||. +++.+..+. .|..
T Consensus 482 las~~~d~~i~iw~~-~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--------~h~~ 550 (577)
T 2ymu_A 482 IASASDDKTVKLWNR-NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHSS 550 (577)
T ss_dssp EEEEETTSEEEEEET-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--------CCSS
T ss_pred EEEEeCCCEEEEEcC-CCCEEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--------CCCC
Confidence 999 57899999995 5777766 5689999999999999999999999999999996 566665554 2455
Q ss_pred ccceeEEEeCCCCCCeEEEEecCCcEEEEe
Q 001367 1029 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1058 (1091)
Q Consensus 1029 ~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~ 1058 (1091)
.|. +++|+| |+++|++++.||+|++||
T Consensus 551 ~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 551 SVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 565 578999 589999999999999997
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-66 Score=626.67 Aligned_cols=577 Identities=15% Similarity=0.182 Sum_probs=477.4
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.+.+.+.+++|||||+ +||+++ +++|+||++.+++.... +.+|...|++++|||||++|
T Consensus 16 ~~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~l 74 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC 74 (611)
T ss_dssp CCTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEE
Confidence 4567889999999998 567776 57999999998876654 78999999999999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC----CcEEEEeCCCCceeEEecCCCcc
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
|+|+.|++|+|||+.+++... ...+.+|.++|.+++|+|||+ .|++++.+ +.|++|| +++....+.+|...
T Consensus 75 asg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~ 149 (611)
T 1nr0_A 75 ASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARA 149 (611)
T ss_dssp EEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSC
T ss_pred EEEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCC
Confidence 999999999999997655332 236789999999999999999 67777754 3677776 56777889999999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1091)
|.+++|+|.. ...|++++.|++|++||..+.+....+..|...|.+++|+|+|++|++++. ++.|++||..+++.
T Consensus 150 v~~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 150 MNSVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTK 224 (611)
T ss_dssp EEEEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCE
T ss_pred ceEEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcE
Confidence 9999996642 136999999999999999888878889999999999999999999999986 66799999999998
Q ss_pred eEEEe-------cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC-CCCceEEEccCCCEEEE
Q 001367 568 KRTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAV 639 (1091)
Q Consensus 568 ~~~~~-------~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~ 639 (1091)
+..+. +|. ..|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.| ++..+++
T Consensus 225 ~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s 299 (611)
T 1nr0_A 225 TGVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVS 299 (611)
T ss_dssp EEECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEE
T ss_pred eeeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEE
Confidence 88774 455 89999999999999999999999999999999998888754221 12334455 6889999
Q ss_pred EECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCC
Q 001367 640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARP 719 (1091)
Q Consensus 640 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~ 719 (1091)
++.|+.+++|+...+.....+.+|...|.+++| +|+++.+++++.|++|++||+.....
T Consensus 300 ~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~---------------------spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 300 ISANGFINFVNPELGSIDQVRYGHNKAITALSS---------------------SADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp EETTCCEEEEETTTTEEEEEECCCSSCEEEEEE---------------------CTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE---------------------eCCCCEEEEEeCCCcEEEEECCCCce
Confidence 999999999999988888888899999999999 88899999999999999999874322
Q ss_pred cccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCC
Q 001367 720 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 799 (1091)
Q Consensus 720 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1091)
. .....+|...|.+++|++++ .+++++.|+.+++|+......... . .....
T Consensus 359 ~-----~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~-~~~~~----- 409 (611)
T 1nr0_A 359 N-----RVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------K-AVANK----- 409 (611)
T ss_dssp E-----ECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------S-CCEEE-----
T ss_pred e-----eecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------c-eeeee-----
Confidence 1 12224588999999999877 488999999999999764321000 0 00001
Q ss_pred CCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce--
Q 001367 800 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-- 877 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~-- 877 (1091)
......+++++|+|+.++++.++.+++|+ .++ +..+. +...+.+++|+| ++++||+|+.|++|++||+.+++.
T Consensus 410 ~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~ 484 (611)
T 1nr0_A 410 LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSE 484 (611)
T ss_dssp CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEE
T ss_pred cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceee
Confidence 23356789999999999888899999998 344 45554 778899999999 899999999999999999987653
Q ss_pred eeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-Eec
Q 001367 878 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE 955 (1091)
Q Consensus 878 ~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d 955 (1091)
+.. .+|...|++++|||||++||+++.|++|++|++.+ ++... .....+|.. .|.+++|||||++||+ +.|
T Consensus 485 ~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~~---~V~~v~fspdg~~lasgs~D 557 (611)
T 1nr0_A 485 VKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHTA---KVACVSWSPDNVRLATGSLD 557 (611)
T ss_dssp EEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCSS---CEEEEEECTTSSEEEEEETT
T ss_pred eec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeeccc---ceeEEEECCCCCEEEEEECC
Confidence 234 67999999999999999999999999999999987 33211 111233554 8999999999999999 588
Q ss_pred CeEEEEEcCCcceee-eeecCC-ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 956 THLAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~~-~~~~~h-~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
++|++||+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 558 ~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 558 NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999999999876433 456789 89999999999998 9999999999999973
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.5e-63 Score=595.47 Aligned_cols=567 Identities=12% Similarity=0.146 Sum_probs=457.4
Q ss_pred cCCCCCCcchhhhcccccCCcccCCCc-hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeece
Q 001367 297 IPDYSPKSSLKKEMFQSFGETSFSDFP-KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF 375 (1091)
Q Consensus 297 ~~~fsP~~~~~~~~~~~~~~~~~~~~p-~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~ 375 (1091)
...|+|++..+..-. .....+.++. ....++|.+|.+.|++++|||||+ +||+|+.||+|+|||+.+++....
T Consensus 23 ~~~~spdg~~l~~~~--~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~--- 96 (611)
T 1nr0_A 23 VLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK--- 96 (611)
T ss_dssp CCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE---
T ss_pred EEeeCCCCCEEEeCC--CCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee---
Confidence 456888876654322 1112222222 456778999999999999999998 679999999999999987654321
Q ss_pred eEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcC
Q 001367 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451 (1091)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 451 (1091)
..+.+|...|.+++|+|||++||+++.+ +.|++|| +++... .+.+|...|.+++|+|
T Consensus 97 --------------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p 157 (611)
T 1nr0_A 97 --------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKP 157 (611)
T ss_dssp --------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECS
T ss_pred --------------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECC
Confidence 1166899999999999999999999865 4788887 444443 5789999999999999
Q ss_pred CCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-----
Q 001367 452 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD----- 526 (1091)
Q Consensus 452 d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----- 526 (1091)
++.. .|++++.|++|++||..+++++..+.+|...|.+++|+| ++.+|++++.|++|++||+.+++....+.
T Consensus 158 ~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 158 SRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234 (611)
T ss_dssp SSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred CCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeecccccc
Confidence 9874 599999999999999999999999999999999999955 67899999999999999999888777663
Q ss_pred --CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEE
Q 001367 527 --APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1091)
Q Consensus 527 --~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~i 604 (1091)
.|...|.+++|+|++++|++++. ++.|++||+.+++.+..+..+......+..+.| +++.+++++.|+.+++
T Consensus 235 ~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~ 308 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINF 308 (611)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEE
T ss_pred ccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEE
Confidence 68889999999999999999986 678999999999998888755433345666667 6788999999999999
Q ss_pred EECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccc-ccccccceeeeeccccccccccc
Q 001367 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGI 683 (1091)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~ 683 (1091)
|+..+++....+..|.. .|.+++|+|++++|++++.|++|++||+.++.....+ .+|...+.++++
T Consensus 309 ~~~~~~~~~~~~~gh~~--~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~----------- 375 (611)
T 1nr0_A 309 VNPELGSIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT----------- 375 (611)
T ss_dssp EETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEE-----------
T ss_pred EeCCCCCcceEEcCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEE-----------
Confidence 99999988877776654 7999999999999999999999999999998776655 578888999988
Q ss_pred cCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecC
Q 001367 684 ANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 763 (1091)
Q Consensus 684 ~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~ 763 (1091)
+++ ..+++++.|+++++|+.............. ........++++|+|+.++++ .++.+++|+-.
T Consensus 376 ----------s~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~~~ 440 (611)
T 1nr0_A 376 ----------TSK-GDLFTVSWDDHLKVVPAGGSGVDSSKAVAN---KLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHG 440 (611)
T ss_dssp ----------CTT-SCEEEEETTTEEEEECSSSSSSCTTSCCEE---ECSSCEEEEEECTTSSCEEEE-ESSEEEEEETT
T ss_pred ----------CCC-CcEEEEEcCCceEEeecCCccccccceeee---ecCCCCcEEEEeCCCcEEEEE-eCceEEEEeCC
Confidence 443 367889999999999976433221111100 122346789999999877666 56788888621
Q ss_pred CcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCcee--EEEecC
Q 001367 764 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMP 840 (1091)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~--~~~~~~ 840 (1091)
. +... .+...+.+++|+|||++||+++ |++|++||+.++.. ... ..
T Consensus 441 ~-------------------------~~~~-----~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~ 489 (611)
T 1nr0_A 441 K-------------------------LTEV-----PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IV 489 (611)
T ss_dssp E-------------------------EEEE-----ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EE
T ss_pred c-------------------------eeee-----ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cC
Confidence 0 1111 1566799999999999999998 79999999987654 234 56
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC-cceeee--eccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 001367 841 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISK--LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 917 (1091)
Q Consensus 841 ~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~-~~~~~~--l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~ 917 (1091)
|...|++++|+| ++++|++++.|++|++|++.+ ++.+.. +.+|.+.|.+++|+|||++|||++.|++|++||+.++
T Consensus 490 h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 490 HPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred CCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 889999999999 899999999999999999988 665544 3459999999999999999999999999999999875
Q ss_pred ceeeeeeeeccCCC-cCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcC
Q 001367 918 GIQTCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAE 964 (1091)
Q Consensus 918 ~~~~~~~~~~~~~~-~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~ 964 (1091)
... .+....+| .. .|.+++|+||++ |++ +.|++|++|++.
T Consensus 569 ~~~---~~~~~~~h~~~---~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 569 SDH---PIIIKGAHAMS---SVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TSC---CEEETTSSTTS---CEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ccc---cchhhccCccc---CeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 421 12445666 44 799999999999 766 789999999973
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.4e-64 Score=659.02 Aligned_cols=608 Identities=15% Similarity=0.191 Sum_probs=500.7
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
...++.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s 666 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFS 666 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ceEEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEe
Confidence 3456789999999999999998 679999999999999999987765 77899999999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
|||++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++...++++++.|+.|++||+.+++++..+.+|.
T Consensus 667 ~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~ 743 (1249)
T 3sfz_A 667 SDDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743 (1249)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred cCCCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence 999999999999999999999987555 67899999999999997655589999999999999999999999999999
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC-------------CCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------------PGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
..|.+++|++ ++.++++++.||.|++||+.+......+.. ....+.+++|+|+|+.+++++
T Consensus 744 ~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---- 817 (1249)
T 3sfz_A 744 NSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA---- 817 (1249)
T ss_dssp SCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----
T ss_pred CCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----
Confidence 9999999965 667999999999999999988766554432 123678899999999999986
Q ss_pred CceEEEEEecCCceeeEEEe-cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 553 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
++.+.+||..++.....+. +|. ..+.+++|+|+++++++++.||.|++||+.++..+..+..+.. .|.+++|+
T Consensus 818 -~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~s 891 (1249)
T 3sfz_A 818 -KNKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFS 891 (1249)
T ss_dssp -TTEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEEC
T ss_pred -CCcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEEC
Confidence 4569999999998887776 444 8999999999999999999999999999999999998887654 79999999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCCeecccccc--------cccceeeeeccccccccc--------cccCCcccCCCCCC
Q 001367 632 KNGTLLAVIANENRIKILETPESNSVDAAGVL--------SDNLRKLSVNPISTVTGA--------GIANGSVSNEDPKE 695 (1091)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~--------~~~~g~~~~~~~s~ 695 (1091)
|+++++++++.||.|++|++.+.......... ......+........... ....+.+....++|
T Consensus 892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 971 (1249)
T 3sfz_A 892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 971 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT
T ss_pred CCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC
Confidence 99999999999999999997642111100000 000000000000000000 00011222233389
Q ss_pred CCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceee
Q 001367 696 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 775 (1091)
Q Consensus 696 ~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 775 (1091)
+++.+++++.+|.|++|++....... ...+|...|.+++|+|+|+.+++++.||.+++|++.....
T Consensus 972 ~g~~l~~g~~~g~i~i~d~~~~~~~~------~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~-------- 1037 (1249)
T 3sfz_A 972 HLEYVAFGDEDGAIKIIELPNNRVFS------SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-------- 1037 (1249)
T ss_dssp TSSEEEEEETTSCCEEEETTTTSCEE------ECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE--------
T ss_pred CCCEEEEEcCCCCEEEEEcCCCceee------ecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce--------
Confidence 99999999999999999987443211 1235888999999999999999999999999999764321
Q ss_pred ccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCC
Q 001367 776 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 855 (1091)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 855 (1091)
.. . .+|...+.+++++|++.+++.+.|+.|++||+.+++....+.+|...|++++|+| ++
T Consensus 1038 --------------~~---~--~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~ 1097 (1249)
T 3sfz_A 1038 --------------VF---L--QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DA 1097 (1249)
T ss_dssp --------------EC---C--BCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECS-SS
T ss_pred --------------EE---E--ecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECC-CC
Confidence 10 1 1488899999999988777666699999999999999999999999999999999 89
Q ss_pred cEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee-ee---eccCCC
Q 001367 856 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR-SL---QTPDGV 931 (1091)
Q Consensus 856 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~-~~---~~~~~~ 931 (1091)
+++++++.||+|++||+.+++.+..+.+|.+.|++++|+|||++||+++.||.|++||+.+++..... .. ....+|
T Consensus 1098 ~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1177 (1249)
T 3sfz_A 1098 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1177 (1249)
T ss_dssp SSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------C
T ss_pred CEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999987643211 01 111233
Q ss_pred cCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 932 MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 932 ~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
. ..|.+++|+|||++|+++. |.|++||+.+++.+.. +.+|...|.+++|+|||++|++++.||.|++|++.
T Consensus 1178 ~---~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1178 G---GWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQT-FYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp C---SCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCC-CCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred C---ceEEEEEECCCCCEEEECC-CeEEEEECCCCceeee-eeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 3 3799999999999999875 8999999999998877 45678899999999999999999999999999974
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-60 Score=579.58 Aligned_cols=558 Identities=11% Similarity=0.158 Sum_probs=484.1
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCC----CceeeeceeEEeccccccceeeeeecCCCcc-EEEEEEC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWS 405 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~s 405 (1091)
..|.+.|.+++|||||+ ++|+++ ++.|+|||+.++ +.+.. +.+|... |++++|+
T Consensus 15 ~~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~s 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFS 73 (615)
T ss_dssp CCCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEEC
T ss_pred CCccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEEC
Confidence 36888999999999999 557776 789999999988 65543 7789999 9999999
Q ss_pred C--CCCEEEEEECCCEEEEEEeeCCc-----ccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC----CcEEEEeCCC
Q 001367 406 P--DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVT 474 (1091)
Q Consensus 406 p--dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~ 474 (1091)
| ++++||+|+.||.|++||+.+++ .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| +
T Consensus 74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--T
T ss_pred cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--C
Confidence 9 99999999999999999998651 1223346778999999999999999 78888877 6888888 6
Q ss_pred CceeEEecCCCcceEEEeecccCCce-EEEEEecCCeEEEEecCCCCceeeecCCCC---cEEEEEEcCC-CCEEEEEec
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGT 549 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~d-~~~l~~~~~ 549 (1091)
++.+..+.+|...|.+++|++ ++. .+++++.|+.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 778899999999999999965 444 899999999999999999888888888888 9999999999 999999986
Q ss_pred CCCCceEEEEEecCCceeeEEE-e---cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC--CC
Q 001367 550 SKEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LP 623 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~ 623 (1091)
++.|++||+.+++.+..+ . .|. ..|.+++|+ +++++++++.|+.|++||+.+++.+..+..+.. ..
T Consensus 228 ----dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 228 ----DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp ----TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred ----CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 566999999999998888 5 555 899999999 999999999999999999999999988886631 12
Q ss_pred CCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
.+.++.|+ +++++++++.+|.|++||+.+++.+..+.+|...|.++++ | . ++++
T Consensus 300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~-------------------~-----l~~~ 353 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-N-------------------P-----LISG 353 (615)
T ss_dssp CEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-T-------------------T-----TEEE
T ss_pred ceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-c-------------------C-----cEEE
Confidence 45677775 8999999999999999999999888899999999998887 4 2 7889
Q ss_pred ccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCcccc
Q 001367 704 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 783 (1091)
Q Consensus 704 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 783 (1091)
+.|+.|++|++. .+. ..|...|.+++| +++..+++++.|+.+++|++....
T Consensus 354 ~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~----------------- 404 (615)
T 1pgu_A 354 SYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE----------------- 404 (615)
T ss_dssp ETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE-----------------
T ss_pred CCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc-----------------
Confidence 999999999986 122 458899999999 667789999999999999865322
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 001367 784 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 863 (1091)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~ 863 (1091)
....+.+++++|++.+++++.++.+.+|++.+++.+..+. +...+.+++|+ +++|++++.
T Consensus 405 ----------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~ 464 (615)
T 1pgu_A 405 ----------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLE 464 (615)
T ss_dssp ----------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEET
T ss_pred ----------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeec
Confidence 1226788999999999999888999999999999988887 78899999998 579999999
Q ss_pred -CCeEEEEeccCccee-eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCC-CcCCCCCceE
Q 001367 864 -DSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSETH 940 (1091)
Q Consensus 864 -dg~i~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~ 940 (1091)
||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++ .+....+ |.. .|.+
T Consensus 465 ~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~h~~---~v~~ 536 (615)
T 1pgu_A 465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRTS---KINA 536 (615)
T ss_dssp TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCSS---CEEE
T ss_pred CCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc-----ceeEeecCCCC---ceeE
Confidence 999999999988766 7788899999999999999999999999999999999865 3444454 554 8999
Q ss_pred EEEcC----------CCCEEEE-EecCeEEEEEcCCc-ceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC
Q 001367 941 IQFHK----------DQTRFLL-VHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 941 l~fs~----------dg~~la~-~~d~~i~vwd~~~~-~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
++|+| ++++|++ +.|+.|++||+.++ +.+.. +.+|...|++++|+|||+ |++++.||+|++|++.+
T Consensus 537 ~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 537 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999 9999999 57899999999998 45544 678999999999999999 99999999999999875
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-61 Score=637.22 Aligned_cols=589 Identities=16% Similarity=0.193 Sum_probs=504.2
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
.+.+|...|++++|+|||++||+|+.||+|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 377899999999999999999999999999999999987554 6789999999999999999 89999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
|+.+++.+..+.+|...|.+++|++..++.++++++.||.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9999999999999999999999988777889999999999999999999999999999999999999999999999986
Q ss_pred CCCceEEEEEecCCceeeEEEeccc----------ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1091)
++.|++||+.+++....+.... .....+.+++|+|+++.+++++ ++.+.+||+.++..+..+....
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSS
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCC
Confidence 6779999999998777664321 0123688899999999999887 6899999999999888776322
Q ss_pred CCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcc
Q 001367 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPE 700 (1091)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l 700 (1091)
...+.+++|+|+++++++++.+|.|++|++.++..+..+.+|...|.+++| +|+++.+
T Consensus 840 -~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~---------------------spdg~~l 897 (1249)
T 3sfz_A 840 -HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF---------------------SPDGSSF 897 (1249)
T ss_dssp -SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEE---------------------CTTSSEE
T ss_pred -CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEE---------------------CCCCCEE
Confidence 347899999999999999999999999999999999999999999999999 7888999
Q ss_pred cccccccccccccccccCCcccce---------------------------eecC----CccccccEEEEEEecCCCeEE
Q 001367 701 ISVEAENKSEVEKPLFARPSECQS---------------------------LLLP----SKVKANKISRLTYNNGGQAIF 749 (1091)
Q Consensus 701 ~s~~~d~~i~~w~~~~~~~~~~~~---------------------------~~~~----~~~~~~~i~~~~~s~dg~~l~ 749 (1091)
++++.|+.+++|+........... .... .......+.+++++|+++.++
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 977 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 977 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEE
T ss_pred EEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEE
Confidence 999999999999965321100000 0000 011345789999999999999
Q ss_pred EeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEE
Q 001367 750 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYI 828 (1091)
Q Consensus 750 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd 828 (1091)
+++.+|.+.+|++..... ... + .+|...|.+++|+|+|+++++++ ||.|++||
T Consensus 978 ~g~~~g~i~i~d~~~~~~----------------------~~~--~--~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 978 FGDEDGAIKIIELPNNRV----------------------FSS--G--VGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp EEETTSCCEEEETTTTSC----------------------EEE--C--CCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred EEcCCCCEEEEEcCCCce----------------------eee--c--ccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 999999999999754321 221 1 14889999999999999999998 79999999
Q ss_pred ccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCc
Q 001367 829 VMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 908 (1091)
Q Consensus 829 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~ 908 (1091)
+.+++... +..|...+.+++|+| ++ .+++++.||.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++
T Consensus 1032 ~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~ 1108 (1249)
T 3sfz_A 1032 WQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT 1108 (1249)
T ss_dssp TTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSC
T ss_pred CCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCc
Confidence 99988764 457889999999999 66 5678999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeee--------ecCCccC
Q 001367 909 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW--------FPISSVP 979 (1091)
Q Consensus 909 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~--------~~~h~~~ 979 (1091)
|++||+.++. .+....+|.. .|.+++|+|||++|++ +.||.|++||+.+++.+..+ ..+|...
T Consensus 1109 v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1180 (1249)
T 3sfz_A 1109 AKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW 1180 (1249)
T ss_dssp CCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSC
T ss_pred EEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCce
Confidence 9999999855 4555666665 7999999999999999 57899999999999887664 2568899
Q ss_pred EEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 980 ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 980 v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
|++++|+|||++|++++ |.|++||+.+++.+..+. .|...|. +++|+| |+.+|++++.||.|++|++
T Consensus 1181 v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~--------~~~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1181 VTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY--------TNGTNLK--KIHVSP-DFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp CCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC--------CSSCCCC--CCEECS-SSCCEEEECTTCCEEEECC
T ss_pred EEEEEECCCCCEEEECC--CeEEEEECCCCceeeeee--------ccCCccc--EEEECC-CCCEEEEecCCcEEEEEee
Confidence 99999999999999875 899999999998765443 1233444 467899 5899999999999999998
Q ss_pred CC
Q 001367 1060 NE 1061 (1091)
Q Consensus 1060 ~~ 1061 (1091)
.+
T Consensus 1248 ~e 1249 (1249)
T 3sfz_A 1248 LE 1249 (1249)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-57 Score=564.48 Aligned_cols=636 Identities=11% Similarity=0.082 Sum_probs=465.1
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
...+|.+.|++++|+|||+ +||+|+.||+|+||+..+++... ...|...|.+++|+| |
T Consensus 12 ~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp-g 69 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK-G 69 (902)
T ss_dssp EEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-T
T ss_pred cccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-C
Confidence 3458999999999999998 78999999999999988766543 224788999999999 8
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee----------
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---------- 478 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---------- 478 (1091)
++||+++.|++|+|||+.+++.+. .+. |...|++++|+|+++ ++++|+.||.|++||+.++++.
T Consensus 70 ~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 70 IYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp TEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred CEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 899999999999999999987654 343 678899999999999 8999999999999999988764
Q ss_pred -EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC------------------CCcEEEEEEcC
Q 001367 479 -YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYSA 539 (1091)
Q Consensus 479 -~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~~s~ 539 (1091)
..+.+|.++|.+++|+|. ++..+++++.||.| +||+++.+....+..+ ...|.+++|+|
T Consensus 144 ~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp HTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred ccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 234679999999999764 34689999999999 9999988777666554 46799999999
Q ss_pred CCCEEEEEecCCCCceEEEEEecCCceeeEE--Ee---ccc----------ccccceEEEEEc----CCC-CEEEEEeCC
Q 001367 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFD----TAK-DQILAAGDD 599 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~v~~~----~~~-~~l~~~s~d 599 (1091)
+|++|++++. ++.|++||+.+++.+.. +. .|. .+...|.+++|+ |++ ..+++|+.+
T Consensus 222 dg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 222 NSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp TSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred CCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 9999999986 66799999999887654 21 121 123579999995 444 456667665
Q ss_pred -----CeEEEEECC------------------CCeeEEEEeCCCCCCCCceEEEcc----------CCCEEEEEECCCeE
Q 001367 600 -----HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENRI 646 (1091)
Q Consensus 600 -----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~i 646 (1091)
+.+.+|++. +.+....+.... ...+..+.+.+ +...+++++.||.|
T Consensus 298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPT-NVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSS-SSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCC-CCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence 378899842 223334443211 13567777655 34578999999999
Q ss_pred EEEECCCCCeec-------ccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCC
Q 001367 647 KILETPESNSVD-------AAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARP 719 (1091)
Q Consensus 647 ~iwd~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~ 719 (1091)
++|++.++.... .+..|...|+++++++. ..++|+......
T Consensus 377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~--------------------------------~~~~w~~~~~~~ 424 (902)
T 2oaj_A 377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV--------------------------------PNKLWLGALSAA 424 (902)
T ss_dssp EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE--------------------------------EHHHHHHHHHTT
T ss_pred EEEECCCCCcccccccCCCcccccCCCeeEEEEEEc--------------------------------CHHHHHHHHhcc
Confidence 999998774332 24455567777776431 123344221110
Q ss_pred cccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCC
Q 001367 720 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 799 (1091)
Q Consensus 720 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1091)
... ..+..+|...+.+++|+|+++.+++++.|++|++||+....... ..++... .. .....+
T Consensus 425 ~~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~~~~~-----l~-~~~~~~ 486 (902)
T 2oaj_A 425 QNK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NASFEVN-----LS-RTLNKA 486 (902)
T ss_dssp BCC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBCEEEE-----HH-HHTTCS
T ss_pred cCC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------CceEEee-----ch-hhcCCC
Confidence 000 11224567778889999999999999999999999987642200 0000000 00 000125
Q ss_pred CCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCc---------------------------------------------e
Q 001367 800 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF---------------------------------------------K 833 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~---------------------------------------------~ 833 (1091)
|...|.+++|+|||++||+++ ||+|+|||+.++ +
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 889999999999999999998 799999999876 2
Q ss_pred eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceee-----eec-cccCCeEEEEEC-----CCC---CE
Q 001367 834 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL---NI 899 (1091)
Q Consensus 834 ~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----pdg---~~ 899 (1091)
++..+.+|...|++++||| +| +||+|+.|++|+|||+.++..+. .+. +|.+.|++++|| ||| ++
T Consensus 567 ~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~ 644 (902)
T 2oaj_A 567 PSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSIL 644 (902)
T ss_dssp EEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEE
T ss_pred eeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceE
Confidence 4677888999999999999 88 99999999999999998876543 343 899999999999 886 89
Q ss_pred EEEEeCCCcEEEEEc---CCCceeeeeeeeccCCCcC--CCCCceEEE-Ec----------------------CCCCEEE
Q 001367 900 LVSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMT--LAPSETHIQ-FH----------------------KDQTRFL 951 (1091)
Q Consensus 900 las~s~Dg~i~vwd~---~~~~~~~~~~~~~~~~~~~--~~~~i~~l~-fs----------------------~dg~~la 951 (1091)
|++++.|++|++||+ .+++.. ..+.+|.. ....|..++ |+ ++|..|+
T Consensus 645 l~sgs~D~tv~~wd~~p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~ 719 (902)
T 2oaj_A 645 MVCGTDMGEVITYKILPASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLI 719 (902)
T ss_dssp EEEEETTSEEEEEEEEECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEE
T ss_pred EEEEecCCcEEEEEEecCCCCcEE-----EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEE
Confidence 999999999999999 565532 22222221 012566665 65 4555555
Q ss_pred EEecCeEEEEEcCCcceeeeeecCCccCEEEE---E------EeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccC
Q 001367 952 LVHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLR 1022 (1091)
Q Consensus 952 ~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v---~------fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 1022 (1091)
+ .+..++||++.++++.... .+|...+.++ . |+++|..|++++.||+|++|++++++.+..........
T Consensus 720 ~-~~~~ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~ 797 (902)
T 2oaj_A 720 T-GFDDIRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIA 797 (902)
T ss_dssp E-CSSEEEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred E-eccceEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCcccc
Confidence 4 4889999999999998876 4556666776 6 78999999999999999999999999988776322111
Q ss_pred CCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCCCc
Q 001367 1023 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1066 (1091)
Q Consensus 1023 ~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~~~ 1066 (1091)
...+. ..++++. |..|.-.+ ...+.+..+-..+...
T Consensus 798 ----~~~~~--~~~~~~~-G~~~~~~~-~~e~~~~~~~~~~~~~ 833 (902)
T 2oaj_A 798 ----AKYIT--ESSVLRN-GDIAIRVS-EFQASLFSTVKEQDTL 833 (902)
T ss_dssp ----HHHHT--TCEECTT-SCEEEECS-SSEEEEEEEESCCCCC
T ss_pred ----ccccc--ceEEcCC-CCEEEEeC-hhheEEEEEEcCCCCC
Confidence 11122 2356663 56554443 3455555554444333
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5e-57 Score=548.81 Aligned_cols=554 Identities=11% Similarity=0.110 Sum_probs=467.3
Q ss_pred cCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCC----cccceeEEEeccccC-eeEEEEcC--CCCceEEEEeeCCC
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDDK 465 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~-v~~~~~s~--d~~~~~l~s~~~d~ 465 (1091)
..|.+.|.+++|+|||++||+++ ++.|++||+.++ +... .+.+|... |.+++|+| +++ +|++++.||
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 45889999999999999999998 789999999987 4433 68899999 99999999 999 899999999
Q ss_pred cEEEEeCCCC--------ceeEEecCCCcceEEEeecccCCceEEEEEecC----CeEEEEecCCCCceeeecCCCCcEE
Q 001367 466 TIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCT 533 (1091)
Q Consensus 466 ~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~ 533 (1091)
.|++||+.++ +.+..+..|...|.+++|+ +++.++++++.+ +.|++|| ..+....+..+...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD--FEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC--TTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEe--CCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 9999999755 6778888999999999995 467899999988 6888887 5667778888999999
Q ss_pred EEEEcCCCC-EEEEEecCCCCceEEEEEecCCceeeEEEeccccccc---ceEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 001367 534 RMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 534 ~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~v~~~~~-~~~l~~~s~dg~i~iwd~~ 608 (1091)
+++|+|+++ .+++++. ++.|++||..+++.+..+.+|. . .|.+++|+|+ ++++++++.||.|++||+.
T Consensus 165 ~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp EEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred EEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 999999998 6788775 6779999999999999999887 6 8999999999 9999999999999999999
Q ss_pred CCeeEEEE-e---CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccccccc----ccceeeeecccccccc
Q 001367 609 KVQLLTTI-D---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVTG 680 (1091)
Q Consensus 609 ~~~~~~~~-~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~ 680 (1091)
+++.+..+ . .+. ..|.+++|+ +++++++++.|+.|++||+.+++.+..+..+. ..+.++.+
T Consensus 238 ~~~~~~~~~~~~~~~~--~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 306 (615)
T 1pgu_A 238 SGEFLKYIEDDQEPVQ--GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-------- 306 (615)
T ss_dssp TCCEEEECCBTTBCCC--SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE--------
T ss_pred CCCEeEEecccccccC--CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe--------
Confidence 99999888 3 343 479999999 99999999999999999999988877776653 34444444
Q ss_pred ccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEe
Q 001367 681 AGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW 760 (1091)
Q Consensus 681 ~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw 760 (1091)
++++.+++++.|+.+++|++...... ..+ .+|...|.+++| |+ +++++.||.+++|
T Consensus 307 --------------~~~~~l~~~~~~g~i~~~d~~~~~~~----~~~--~~~~~~v~~~~~-~~---l~~~~~dg~i~~w 362 (615)
T 1pgu_A 307 --------------TGNGRIISLSLDGTLNFYELGHDEVL----KTI--SGHNKGITALTV-NP---LISGSYDGRIMEW 362 (615)
T ss_dssp --------------EETTEEEEEETTSCEEEEETTEEEEE----EEE--CCCSSCEEEEET-TT---TEEEETTSCEEET
T ss_pred --------------CCCCeEEEEECCCCEEEEECCCCcEE----EEE--eCCCCCEEEEEe-cC---cEEECCCCeEEEE
Confidence 26788999999999999998742211 111 348899999999 88 8999999999999
Q ss_pred ecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEec
Q 001367 761 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIM 839 (1091)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~ 839 (1091)
++. ++. .+|...|.++++ +++..+++++ |+.+++||+.+++...
T Consensus 363 ~~~-------------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~--- 407 (615)
T 1pgu_A 363 SSS-------------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS--- 407 (615)
T ss_dssp TTT-------------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS---
T ss_pred Ech-------------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC---
Confidence 853 011 248899999999 5566677666 8999999988766433
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCc
Q 001367 840 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWG 918 (1091)
Q Consensus 840 ~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~-Dg~i~vwd~~~~~ 918 (1091)
.+.+++|+| ++.+++++ .++.+.+|++.+++.+..+. |...+++++|+ +++|++++. |+.|++||+.+++
T Consensus 408 ----~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~ 478 (615)
T 1pgu_A 408 ----QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE 478 (615)
T ss_dssp ----CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE
T ss_pred ----CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcc
Confidence 678999999 88888877 78899999999999888887 88999999999 899999999 9999999999854
Q ss_pred eeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEee----------
Q 001367 919 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC---------- 987 (1091)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~---------- 987 (1091)
... ....+|.. .|.+++|+|+|++|++ +.|+.|++||+.+++.+..+...|...|++++|+|
T Consensus 479 ~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~ 551 (615)
T 1pgu_A 479 VSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI 551 (615)
T ss_dssp EEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CC
T ss_pred ccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccccc
Confidence 221 44455554 7999999999999999 57899999999999998875544999999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCC-ceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 988 DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 988 dg~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
|+++|++++.||.|++||+.++ ..+..+. .|...|. +++|+|+ +. |++++.||.|++|++..
T Consensus 552 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~h~~~v~--~l~~s~~-~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALN--------AHKDGVN--NLLWETP-ST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SCCEEEEEETTSCEEEEESSCTTCCEEETT--------SSTTCEE--EEEEEET-TE-EEEEETTSCEEEEEEC-
T ss_pred CCCEEEEEcCCCcEEEEECCCCceechhhh--------cCccceE--EEEEcCC-CC-eEEecCCceEEEEeeec
Confidence 9999999999999999999998 5554432 2345565 5688884 67 99999999999999853
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-56 Score=550.92 Aligned_cols=595 Identities=9% Similarity=0.044 Sum_probs=436.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
..+|...|++++|+|++++||+|+.||+|+||+..+++... ...|..+|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 45799999999999999999999999999999987764322 235788999999999 77 899999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce-----------eeecCCCCcEEEEEEcCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN 540 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~i~~~~~s~d 540 (1091)
+.+++++..+. |...|++++|+ +++.++++|+.||.|++||+++.... .....|..+|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~s--p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTD--ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECC--TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEEC--CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999998886 77899999995 46789999999999999999876643 223567789999999996
Q ss_pred C-CEEEEEecCCCCceEEEEEecCCceeeEEEecc---------------cccccceEEEEEcCCCCEEEEEeCCCeEEE
Q 001367 541 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI 604 (1091)
Q Consensus 541 ~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~v~~~~~~~~l~~~s~dg~i~i 604 (1091)
+ ..+++++. ++.| +||+.+++.++.+..+ ..|...|.+++|+|++++|++++.||+|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 66777654 6779 9999999999888766 112367999999999999999999999999
Q ss_pred EECCCCeeEEEEeC-----CC-----------CCCCCceEEEc----cCC-CEEEEEECC-----CeEEEEECCC-----
Q 001367 605 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFN----KNG-TLLAVIANE-----NRIKILETPE----- 653 (1091)
Q Consensus 605 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s----~~~-~~l~~~~~d-----g~i~iwd~~~----- 653 (1091)
||+.+++.+..... +. +...|.+++|+ |++ .++++|+.+ +.+.+|++..
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99999988764221 21 12358899995 443 567777665 3788888531
Q ss_pred -------------CCeecccc-cccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCC
Q 001367 654 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARP 719 (1091)
Q Consensus 654 -------------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~ 719 (1091)
.+....+. .+...+..+.+.+.......+ ..+...+++++.|+++++|++..+..
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g-----------~~d~~~l~~~s~dg~l~~~~~~~g~~ 386 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG-----------CHNPGLILLILGNGEIETMLYPSGIF 386 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH-----------TBSCSEEEEEETTSCEEEEETTTCCE
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCC-----------CCCceeEEEEcCCCcEEEEECCCCCc
Confidence 11111121 234455555553311000000 23445678888899999999853311
Q ss_pred ccc-ceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCC
Q 001367 720 SEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 798 (1091)
Q Consensus 720 ~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1091)
... .........|...|.++++++... .+|+..... . +... ....
T Consensus 387 ~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~----~~l~ 432 (902)
T 2oaj_A 387 TDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD----YLLK 432 (902)
T ss_dssp ECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC----CSCC
T ss_pred ccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC----Cccc
Confidence 110 000111123557888888865321 234421100 0 0000 1122
Q ss_pred CCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeE--EE----ec-----CCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001367 799 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LT----IM-----PPSPTATSLAFNPHDNNVIAIGMDDST 866 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~--~~----~~-----~~~~~i~~l~~s~~~~~~la~g~~dg~ 866 (1091)
+|...+..++|+||+++|++++ |++|++||+.++... .. +. +|...|.+++|+| ++++||+|+.||+
T Consensus 433 G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dgt 511 (902)
T 2oaj_A 433 GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGD 511 (902)
T ss_dssp CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSC
T ss_pred CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcE
Confidence 5777888899999999999998 899999999887421 11 11 6888999999999 8999999999999
Q ss_pred EEEEeccCcc---------------------------------------------eeeeeccccCCeEEEEECCCCCEEE
Q 001367 867 ILIYNARSSE---------------------------------------------VISKLEGHSKRVTGLVFSDALNILV 901 (1091)
Q Consensus 867 i~iwd~~~~~---------------------------------------------~~~~l~~h~~~V~~l~~spdg~~la 901 (1091)
|+||++.+++ ++..+.+|.+.|++|+||||| +||
T Consensus 512 V~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lA 590 (902)
T 2oaj_A 512 VVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVG 590 (902)
T ss_dssp EEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEE
T ss_pred EEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEE
Confidence 9999998762 367788999999999999999 999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeeeccC-CCcCCCCCceEEEEc-----CCC---CEEEE-EecCeEEEEEc---CCcce
Q 001367 902 SSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELTC 968 (1091)
Q Consensus 902 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~fs-----~dg---~~la~-~~d~~i~vwd~---~~~~~ 968 (1091)
+|+.|++|+|||+++........+..+. +|.. .|++++|| ||| ++|++ +.|++|++||+ .+|++
T Consensus 591 sgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~ 667 (902)
T 2oaj_A 591 IAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF 667 (902)
T ss_dssp EEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred EEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE
Confidence 9999999999999886543221223443 6665 89999999 886 78888 58899999999 78887
Q ss_pred eeeeecCC-----ccCEEEEE-Ee----------------------eCCCEEEEEEcCCcEEEEeCCCCceEEEeecccc
Q 001367 969 LKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1020 (1091)
Q Consensus 969 ~~~~~~~h-----~~~v~~v~-fs----------------------~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~ 1020 (1091)
...+. +| ..+|.+++ |+ ++|..|+++ +..|+||++.+++.......
T Consensus 668 ~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~--- 741 (902)
T 2oaj_A 668 DVQLM-DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK--- 741 (902)
T ss_dssp EEEEE-EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS---
T ss_pred EEEec-CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc---
Confidence 76643 44 46777777 76 455555543 77899999999988765531
Q ss_pred cCCCCcccccceeE-EE------eCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1021 LRPTTSCLHVYPHA-IA------AHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1021 ~~~~~~~~~v~~~~-~~------~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
|...+..++ +. |++ ++..|++++.||.|++|++++.+
T Consensus 742 -----~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~ 785 (902)
T 2oaj_A 742 -----YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFK 785 (902)
T ss_dssp -----SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCC
T ss_pred -----cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchH
Confidence 112233221 24 566 47899999999999999998866
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.2e-48 Score=484.33 Aligned_cols=558 Identities=14% Similarity=0.176 Sum_probs=426.8
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
...+++.+|++.|++++|||||+ ++|+|+.||.|+|||+.+++.+.. +.+|...|.+++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEE
Confidence 34578899999999999999998 679999999999999999987765 6689999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 483 (1091)
+|++++||+|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.||.|++||+.++ .....+.+
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 9999999999999999999999987554 6789999999999999999 8999999999999999987 67788899
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC-CcEEEEEEcC--CCCEEEEEecCCCCceEEEEE
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~iw 560 (1091)
|...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++|
T Consensus 139 ~~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~ 213 (814)
T 3mkq_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (814)
T ss_dssp CSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEE
T ss_pred CCCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEE
Confidence 9999999999652 56799999999999999998887777666554 7899999999 9999999875 6679999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC--EEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 638 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~ 638 (1091)
|+.+++.+..+.+|. ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIA 288 (814)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEE
T ss_pred ECCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEE
Confidence 999999999998877 8999999999999999999999999999999999998877654 689999999987 455
Q ss_pred EEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccc---------
Q 001367 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKS--------- 709 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i--------- 709 (1091)
++ .++.+.+|++..... .+.+ +|+++.+++++.+...
T Consensus 289 ~~-~~~~~~~~~~~~~~~------------~~~~---------------------~~~g~~~~~~~~~~~~~~~~~~~~~ 334 (814)
T 3mkq_A 289 SG-FDNGFTVLSLGNDEP------------TLSL---------------------DPVGKLVWSGGKNAAASDIFTAVIR 334 (814)
T ss_dssp EE-ETTEEEEEECSCCSC------------CEEE---------------------CSSSEEEEECCTTSCTTCEEEEECC
T ss_pred EE-eCCCEEEEEcCCCCc------------eeEE---------------------CCCCCEEEECcccccceeeeeeecc
Confidence 55 467788998765432 2333 3444444443332211
Q ss_pred ccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCc
Q 001367 710 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 789 (1091)
Q Consensus 710 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1091)
..|++............. ..+...+.+++|+|+|+.+++++ +|.+.+|++.....
T Consensus 335 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~---------------------- 389 (814)
T 3mkq_A 335 GNEEVEQDEPLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN---------------------- 389 (814)
T ss_dssp SCCCCCSSSCBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE----------------------
T ss_pred cccccccCccceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc----------------------
Confidence 123322222211111111 22556788999999999888877 89999998542110
Q ss_pred eeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCC---cEEEEEeCCC
Q 001367 790 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDDS 865 (1091)
Q Consensus 790 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~---~~la~g~~dg 865 (1091)
.+...+.+++|+|||+++++++ ++.|++|+. +.+|...+.+++|+| ++ .+|++++.|+
T Consensus 390 ---------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~ 451 (814)
T 3mkq_A 390 ---------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFSGALLGVKSDG 451 (814)
T ss_dssp ---------EEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEECSSSEEEEETT
T ss_pred ---------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceecceEEEEecCC
Confidence 1345678999999999999997 699999963 344677888999999 77 5788899999
Q ss_pred eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEE------eCCCcEEEEEcCC---------------Cceeeeee
Q 001367 866 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCRS 924 (1091)
Q Consensus 866 ~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~------s~Dg~i~vwd~~~---------------~~~~~~~~ 924 (1091)
.|++||+.+++.+..+..|.. .++|+|||++|+++ +.++.+.+|.-.. +.......
T Consensus 452 ~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (814)
T 3mkq_A 452 FVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDV 528 (814)
T ss_dssp EEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEE
T ss_pred EEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheee
Confidence 999999999999999988765 89999999999999 6666555554210 00000011
Q ss_pred eeccCCCcCCCCCceEEEEcCCCCEEEEEe-cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEE
Q 001367 925 LQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1003 (1091)
Q Consensus 925 ~~~~~~~~~~~~~i~~l~fs~dg~~la~~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~i 1003 (1091)
+.... ..+.+..|. +..++... .+.+..+- .++... .......+..+.|.+++..++....++.+..
T Consensus 529 ~~~~~------~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 596 (814)
T 3mkq_A 529 LYELS------ESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVYG 596 (814)
T ss_dssp EEEEC------SCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEEE
T ss_pred eeEec------cEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEEE
Confidence 11100 135555554 34444333 34444432 222111 1122456667778899999999999999999
Q ss_pred EeCCCC
Q 001367 1004 HEASNL 1009 (1091)
Q Consensus 1004 wd~~~~ 1009 (1091)
|++...
T Consensus 597 ~~l~~~ 602 (814)
T 3mkq_A 597 YEISLE 602 (814)
T ss_dssp EECCHH
T ss_pred EEECcH
Confidence 998643
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.1e-46 Score=471.05 Aligned_cols=477 Identities=15% Similarity=0.183 Sum_probs=391.5
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|...|++++|+|+|++||+++.||.|+|||+.+++.+. .+.+|..+|.+++|+|+++ +|++++.||.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999986554 6779999999999999999 899999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC-CceeeecCCCCcEEEEEEcC-CCCEEEEEec
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 549 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~ 549 (1091)
+.+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++. .....+..+...+.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999954 6679999999999999999887 45567788899999999999 8889999876
Q ss_pred CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
++.|++||+.++.....+..+. ...+.+++|+| ++.++++++.||.|++||+.+++.+..+..+.. .|.+
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~ 233 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSF 233 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEE
Confidence 6679999999888877776654 47899999999 999999999999999999999999998887654 6899
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcc-cccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPE-ISVEAE 706 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l-~s~~~d 706 (1091)
++|+|+++++++++.||.|++||..++.....+..+...+.++++ +|++..+ ++.+.+
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~---------------------~~~~~~~~~~~~~~ 292 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT---------------------HPTGRKNYIASGFD 292 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEE---------------------CTTCGGGEEEEEET
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEE---------------------ccCCCceEEEEEeC
Confidence 999999999999999999999999999999999999999999999 5565543 555666
Q ss_pred cccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCce---EEEeecCCcccccccceeeccCCcccc
Q 001367 707 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV---HLMWRWPRNDLTLSTEATTKVPPRLYQ 783 (1091)
Q Consensus 707 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~---i~vw~~~~~~~~~~~~~~~~~~~~~~~ 783 (1091)
+.+.+|++.. ....+.++|+|+.+++++.+.. +..-.+ ...|+
T Consensus 293 ~~~~~~~~~~------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 338 (814)
T 3mkq_A 293 NGFTVLSLGN------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAVI----------------RGNEE 338 (814)
T ss_dssp TEEEEEECSC------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEEC----------------CSCCC
T ss_pred CCEEEEEcCC------------------CCceeEECCCCCEEEECcccccceeeeeeec----------------ccccc
Confidence 7788887642 1234678899988877765532 111000 01122
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 001367 784 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 863 (1091)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~ 863 (1091)
+..+............+...+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|+| +++++|+++.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~ 412 (814)
T 3mkq_A 339 VEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDE 412 (814)
T ss_dssp CCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECT
T ss_pred cccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeC
Confidence 33332221111111236677899999999999999999999999987654432 35678999999 8999999999
Q ss_pred CCeEEEEeccCcceeeeeccccCCeEEEEECCCC---CEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceE
Q 001367 864 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 940 (1091)
Q Consensus 864 dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 940 (1091)
+|.|++|+ .+.+|...+.+++|+||| ++|++++.|+.|++||+.+++ .+.....+. ..
T Consensus 413 ~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~ 473 (814)
T 3mkq_A 413 TGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KD 473 (814)
T ss_dssp TCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EE
T ss_pred CCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CE
Confidence 99999995 346688889999999998 689999999999999999865 334444432 28
Q ss_pred EEEcCCCCEEEEE------ecCeEEEEEc
Q 001367 941 IQFHKDQTRFLLV------HETHLAIYEA 963 (1091)
Q Consensus 941 l~fs~dg~~la~~------~d~~i~vwd~ 963 (1091)
++|||||++|+++ .++.+.+|..
T Consensus 474 v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 474 VIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 9999999999997 6666666644
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-45 Score=418.41 Aligned_cols=288 Identities=22% Similarity=0.368 Sum_probs=266.9
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
.++.+|.++|++++|+|+++ ++++|+.||+|+|||+.+++.+.. +.+|...|.+++|+|+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~ 161 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS 161 (410)
T ss_dssp CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred EeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCC
Confidence 45789999999999999998 779999999999999999987765 7789999999999999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcc
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
+++||+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.++.++.++.+|...
T Consensus 162 ~~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~ 236 (410)
T 1vyh_C 162 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236 (410)
T ss_dssp SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence 9999999999999999999876554 5779999999999999999 8999999999999999999999999999999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCC--------------------CCEEEEE
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSC 547 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d--------------------~~~l~~~ 547 (1091)
|.++.++ +++.++++++.|+.|++||+.+......+..|...|.+++|+|+ +.+++++
T Consensus 237 v~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 237 VRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred EEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 9999984 57789999999999999999999988899999999999999996 6789998
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
+. ++.|++||+.++..+..+.+|. ..|.+++|+|++++|++++.||+|++||+.+++.+..+..|.. .|.+
T Consensus 315 s~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~ 385 (410)
T 1vyh_C 315 SR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTS 385 (410)
T ss_dssp ET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEE
T ss_pred eC----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEE
Confidence 76 6779999999999999999887 8999999999999999999999999999999999999987755 6999
Q ss_pred EEEccCCCEEEEEECCCeEEEEEC
Q 001367 628 ICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
++|+|++.+|++|+.||+|++|+.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999985
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-39 Score=362.03 Aligned_cols=296 Identities=19% Similarity=0.271 Sum_probs=266.3
Q ss_pred chheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEE
Q 001367 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1091)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 402 (1091)
+....++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~ 103 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTC 103 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEE
Confidence 3456788999999999999999998 679999999999999999987754 66799999999
Q ss_pred EECCCCCEEEEEECCCEEEEEEeeCCcc-cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe
Q 001367 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1091)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1091)
+|+|++++||+|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+
T Consensus 104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEE
Confidence 9999999999999999999999987642 233446789999999999999875 889999999999999999999999
Q ss_pred cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 561 (1091)
.+|...|.+++|++ ++.++++++.||.|++||+++......+..|...|.+++|+|++++|++++. ++.|++||
T Consensus 181 ~~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd 254 (340)
T 1got_B 181 TGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFD 254 (340)
T ss_dssp CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEE
Confidence 99999999999965 6689999999999999999999999999999999999999999999999986 66799999
Q ss_pred cCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
+.+++.+..+.... ....|.+++|+|+++++++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|++.+|++++
T Consensus 255 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 255 LRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp TTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEE
T ss_pred CCCCcEEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEc
Confidence 99988877765322 235799999999999999999999999999999999999887755 799999999999999999
Q ss_pred CCCeEEEEE
Q 001367 642 NENRIKILE 650 (1091)
Q Consensus 642 ~dg~i~iwd 650 (1091)
.|+.|++||
T Consensus 332 ~D~~i~iWd 340 (340)
T 1got_B 332 WDSFLKIWN 340 (340)
T ss_dssp TTSCEEEEC
T ss_pred CCccEEecC
Confidence 999999996
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.8e-40 Score=359.13 Aligned_cols=294 Identities=15% Similarity=0.235 Sum_probs=265.1
Q ss_pred heeeecccCCCCcEEEEEcCC----CceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 400 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspd----g~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 400 (1091)
.+.+.+.+|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++.... ..+.+|...|.
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~ 84 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVV 84 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEE
T ss_pred heeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEE
Confidence 445677899999999999985 44 789999999999999987654321 12779999999
Q ss_pred EEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++++.|+.|++||+.+++....
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEE
Confidence 99999999999999999999999999986554 6778889999999999999 899999999999999999999999
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
+..|...|.+++|+ +++.+|++++.||.|++||+.+++....+..+..+|.+++|+|++++|++++. ++.|++|
T Consensus 160 ~~~~~~~v~~~~~s--pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iw 233 (321)
T 3ow8_A 160 LDTRGKFILSIAYS--PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIY 233 (321)
T ss_dssp EECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEE
T ss_pred ecCCCceEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 99999999999995 47789999999999999999999888899999999999999999999999976 6679999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1091)
|+.+++....+.+|. ..|.+++|+|++++|++++.|++|++||+.+++++..+..+.. .|.+++|+|++++|+++
T Consensus 234 d~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 234 DVQHANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp ETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEE
T ss_pred ECCCcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEE
Confidence 999999999998887 8999999999999999999999999999999999999877654 79999999999999999
Q ss_pred ECCCeEEEEECC
Q 001367 641 ANENRIKILETP 652 (1091)
Q Consensus 641 ~~dg~i~iwd~~ 652 (1091)
+.||.|++||..
T Consensus 309 ~~d~~i~vwd~p 320 (321)
T 3ow8_A 309 GDDQEIHIYDCP 320 (321)
T ss_dssp ETTCCEEEEECC
T ss_pred eCCCeEEEEeCC
Confidence 999999999964
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.6e-39 Score=362.44 Aligned_cols=298 Identities=17% Similarity=0.244 Sum_probs=267.9
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
....++|.+|.+.|++++|+||++ +||+|+.||+|+|||..+++.... +..|...|.+++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~ 113 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACA 113 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEE
Confidence 456788999999999999999998 679999999999999999887654 556889999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcc---cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
|+|+|.+||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+.+++++..
T Consensus 114 ~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~ 191 (354)
T 2pbi_B 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQS 191 (354)
T ss_dssp ECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEE
Confidence 999999999999999999999875421 223346778999999999999999 799999999999999999999999
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
+.+|...|.++++++.+++.+|++++.||.|++||+++++....+..|...|.+++|+|++.++++++. ++.|++|
T Consensus 192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lw 267 (354)
T 2pbi_B 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLY 267 (354)
T ss_dssp EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEE
T ss_pred EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEE
Confidence 999999999999988878889999999999999999999998899999999999999999999999986 6679999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 640 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 640 (1091)
|+.+++.+..+..+. ....+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|++++|+++
T Consensus 268 d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 268 DLRADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp ETTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEE
T ss_pred ECCCCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEE
Confidence 999988777665433 234789999999999999999999999999999999888876654 79999999999999999
Q ss_pred ECCCeEEEEE
Q 001367 641 ANENRIKILE 650 (1091)
Q Consensus 641 ~~dg~i~iwd 650 (1091)
+.|++|++|+
T Consensus 345 s~D~~v~vW~ 354 (354)
T 2pbi_B 345 SWDHTLRVWA 354 (354)
T ss_dssp ETTSEEEEEC
T ss_pred cCCCCEEecC
Confidence 9999999995
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.7e-39 Score=350.81 Aligned_cols=293 Identities=18% Similarity=0.310 Sum_probs=257.0
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
...+++.+|.+.|++++|||||+ +|++|+.||+|+|||+.++..+.. +.+|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 45678999999999999999998 679999999999999999987754 6679999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 483 (1091)
+|++++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999987554 6889999999999999999 8999999999999999987 45577899
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-CCCCcEEEEEEcC--CCCEEEEEecCCCCceEEEEE
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~iw 560 (1091)
|...|.+++|+|. ++.+|++++.|+.|++||+........+. .+...+..+.|+| ++.+|++++. ++.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999763 45799999999999999998877666554 4556788889886 7789999986 6789999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC--EEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 638 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~ 638 (1091)
|+.+++++..+.+|. ..|.+++|+|++++|++|+.||+|++||..+++.+..+..+.. .+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIA 288 (304)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEE
T ss_pred eCCCCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEE
Confidence 999999999999988 8999999999999999999999999999999999999876544 688999999875 577
Q ss_pred EEECCCeEEEEECCC
Q 001367 639 VIANENRIKILETPE 653 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~ 653 (1091)
+|+.+| +.+|++..
T Consensus 289 sg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEETTE-EEEEECC-
T ss_pred EecCCc-eEEEEecc
Confidence 777654 66777653
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.7e-38 Score=348.93 Aligned_cols=301 Identities=19% Similarity=0.241 Sum_probs=259.4
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+..+|.+|.+.|++++|+|++..+|++|+.|++|++|++.+...... .....+.+|...|.+++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~~ 73 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCTL 73 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEEE
Confidence 355789999999999999998744889999999999999875443221 111237799999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
+|+|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|++|++||+. ++++..+.+|
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h 147 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGH 147 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEecc
Confidence 9999999999999999999999987554 6789999999999999999 89999999999999975 6678889999
Q ss_pred CcceEEEeecccC----CceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 485 GAPVYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 485 ~~~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
...|.++.+.+.. ++..+++++.|+.|++||++.......+..|...|.+++|+|++++|++++. ++.|++|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iw 223 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLW 223 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence 9999999997643 4568999999999999999998888889999999999999999999999986 6789999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC------CCCCCceEEEccCC
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNG 634 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~ 634 (1091)
|+.+++.+..+..+ ..|.+++|+|++.++++++.+ .+++|+++.+..+..+..+. ....+.+++|+|||
T Consensus 224 d~~~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 298 (319)
T 3frx_A 224 NLAAKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298 (319)
T ss_dssp ETTTTEEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred ECCCCcEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence 99999998888764 479999999999998888755 59999999988877765331 12357799999999
Q ss_pred CEEEEEECCCeEEEEECCCC
Q 001367 635 TLLAVIANENRIKILETPES 654 (1091)
Q Consensus 635 ~~l~~~~~dg~i~iwd~~~~ 654 (1091)
++|++|+.||.|++|++.++
T Consensus 299 ~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 299 QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEeecCceEEEEEEeec
Confidence 99999999999999998653
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.6e-39 Score=363.95 Aligned_cols=306 Identities=17% Similarity=0.257 Sum_probs=264.5
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
..+.++|.+|.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+.. +.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 456788999999999999999998 679999999999999999987754 678999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcc----cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
|+|+|++||+|+.|+.|++|++.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999976421 1122357799999999999998654 69999999999999999999988
Q ss_pred Ee-----cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC-CCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 480 SF-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 480 ~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
.+ .+|...|.++++.+. ++.++++|+.||.|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 77 679999999998643 567999999999999999984 4667788899999999999999999999986
Q ss_pred ceEEEEEecCCceeeEEEecccc----cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC--CCCCCCCce
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPR 627 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 627 (1091)
++.|++||+.+++.+..+..+.. +...|.+++|+|+++++++|+.||.|++||..+++.+..+.. ..+...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 66799999999999888766431 123488999999999999999999999999999988877732 233457999
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCC
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
++|+|++++|++|+.|++|++|++...+
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999999987653
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-38 Score=361.94 Aligned_cols=286 Identities=18% Similarity=0.288 Sum_probs=267.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|..+|++++|+|++.+|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 66899999999999999999999999999999999987655 6889999999999999999 899999999999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+.+++++..+.+|...|.+++|++ ++.+|++++.|+.|++||+.++.....+..|...+.++.++|++.++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 999999999999999999999965 5679999999999999999999998899999999999999999999999986
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCC--------------------CCEEEEEeCCCeEEEEECCCCe
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~--------------------~~~l~~~s~dg~i~iwd~~~~~ 611 (1091)
++.|++||+.+++....+.+|. ..|.+++|+|+ +.++++|+.|+.|++||+.+++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6679999999999999998887 89999999996 6789999999999999999999
Q ss_pred eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCC
Q 001367 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNE 691 (1091)
Q Consensus 612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~ 691 (1091)
.+..+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|++++|
T Consensus 330 ~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~------------------- 388 (410)
T 1vyh_C 330 CLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF------------------- 388 (410)
T ss_dssp EEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE-------------------
T ss_pred eEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEE-------------------
Confidence 9999887654 6899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccccccccccc
Q 001367 692 DPKEDVKPEISVEAENKSEVEKP 714 (1091)
Q Consensus 692 ~~s~~~~~l~s~~~d~~i~~w~~ 714 (1091)
+|++..+++++.|++|++|+.
T Consensus 389 --~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 389 --HKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp --CSSSSCEEEEETTSEEEEEC-
T ss_pred --cCCCCEEEEEeCCCcEEEEeC
Confidence 788899999999999999985
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.9e-38 Score=346.79 Aligned_cols=286 Identities=14% Similarity=0.181 Sum_probs=262.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|...|.+++|+||+++|++|+.|++|++||+.+++.+. .+..|...|.+++|+|+++ ++++++.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 78999999999999999999999999999999999886544 6778999999999999999 899999999999999
Q ss_pred CCCC----ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 472 ~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
+.++ .....+.+|...|.++.|.+. + .+++++.|+.|++||++++.....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9876 345678899999999999653 3 58999999999999999999888999999999999999999999999
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
+. ++.|++||+.++.....+.+|. ..|.+++|+|+++++++++.||+|++||+.+++.+..+..+.....|.+
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 86 6679999999999999998887 8999999999999999999999999999999998888765554456899
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
++|+|++++|++|+.|+.|++||+.++..+..+.+|...|.+++| +|++..+++++.|+
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~---------------------s~dg~~l~s~s~D~ 334 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV---------------------TDDGMAVATGSWDS 334 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE---------------------CTTSSCEEEEETTS
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEE---------------------cCCCCEEEEEcCCc
Confidence 999999999999999999999999999999999999999999999 78899999999999
Q ss_pred cccccc
Q 001367 708 KSEVEK 713 (1091)
Q Consensus 708 ~i~~w~ 713 (1091)
+|++|+
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999996
No 22
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.3e-38 Score=344.54 Aligned_cols=288 Identities=16% Similarity=0.242 Sum_probs=263.9
Q ss_pred ecCCCccEEEEEECCC----CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcE
Q 001367 392 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1091)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+||++.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5689999999999985 67999999999999999987653 23346789999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
++||+.+++.+..+..|...+.+++|+ +++.+|++++.||.|++|++++......+..+...+.+++|+|++++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFS--PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEEC--TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEEC--CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999995 477899999999999999999999988888888999999999999999999
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCce
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 627 (1091)
+. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.+++....+..+.. .|.+
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~ 253 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLN 253 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS--CEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC--ceEE
Confidence 86 5669999999999999998887 8999999999999999999999999999999999988877654 6899
Q ss_pred EEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 628 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++| +|+++.+++++.|+
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~---------------------s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY---------------------NGNGSKIVSVGDDQ 312 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---------------------CTTSSEEEEEETTC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEE---------------------CCCCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999 78899999999999
Q ss_pred ccccccc
Q 001367 708 KSEVEKP 714 (1091)
Q Consensus 708 ~i~~w~~ 714 (1091)
+|++||.
T Consensus 313 ~i~vwd~ 319 (321)
T 3ow8_A 313 EIHIYDC 319 (321)
T ss_dssp CEEEEEC
T ss_pred eEEEEeC
Confidence 9999995
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=346.78 Aligned_cols=306 Identities=15% Similarity=0.236 Sum_probs=249.6
Q ss_pred heeeecccCCC-CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 325 TVAQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 325 ~~~~~l~~h~~-~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.++++|.+|.+ .|++++|||||+ +||+|+.|++|+|||+.++..... .....+|...|.+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVA 68 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEE
Confidence 56788999998 999999999998 679999999999999988764321 112468999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc---eeEE
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYS 480 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~ 480 (1091)
|+|+|++||+|+.|++|++|++.++.. .....+.+|...|.+++|+|+++ +|++++.|++|++||+.++. ++..
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 999999999999999999999987642 23346889999999999999999 89999999999999998763 4667
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc--eeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
+.+|...|.+++|+| ++.+|++++.|+.|++||.+.... ...+..|...|.+++|+|++++|++++. ++.|+
T Consensus 146 ~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~ 219 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVR 219 (345)
T ss_dssp ECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEE
T ss_pred ecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEE
Confidence 889999999999965 567999999999999999987653 3577889999999999999999999986 66799
Q ss_pred EEecCCc---------------eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----eE---EEE
Q 001367 559 EWNESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----LL---TTI 616 (1091)
Q Consensus 559 iwd~~~~---------------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~----~~---~~~ 616 (1091)
+|+.... .++..+.+. |...|.+++|+|++..+++++.|+.|++|+...+. .. ...
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred EeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence 9996321 233344442 24789999999999999999999999999987542 11 111
Q ss_pred eCCCCCCCCceEEEccCC-CEEEEEECCCeEEEEECCCCCeec
Q 001367 617 DAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 658 (1091)
Q Consensus 617 ~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1091)
....+...|.+++|+|++ .+|++++.||+|++|++.+.+...
T Consensus 298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 122334579999999987 599999999999999998876543
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-38 Score=355.05 Aligned_cols=313 Identities=16% Similarity=0.200 Sum_probs=228.9
Q ss_pred ccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC------ceEEEeecCCcccccccce
Q 001367 700 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN------GVHLMWRWPRNDLTLSTEA 773 (1091)
Q Consensus 700 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d------g~i~vw~~~~~~~~~~~~~ 773 (1091)
++.++.+.....|++....+ ..|...|.+++|+|||++|++++.+ +.+++|+.
T Consensus 19 ~~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~----------- 77 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD----------- 77 (357)
T ss_dssp -------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS-----------
T ss_pred EEecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC-----------
Confidence 34445567778888653221 2488999999999999999999874 45555553
Q ss_pred eeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEE----EecCCCCCeEEEE
Q 001367 774 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLA 849 (1091)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~ 849 (1091)
.++...........+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++
T Consensus 78 -----------~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 78 -----------PEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp -----------CC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred -----------CCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 3332222211112247888999999999988887779999999999887553 3447889999999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecc
Q 001367 850 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTP 928 (1091)
Q Consensus 850 ~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~las~s~Dg~i~vwd~~~~~~~~~~~~~~~ 928 (1091)
|+| ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++. ++++++.|++|++||+.+++.... ...
T Consensus 147 ~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~---~~~ 222 (357)
T 4g56_B 147 VFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR---IDF 222 (357)
T ss_dssp ECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB---CCC
T ss_pred ECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee---eee
Confidence 999 899999999999999999999999999999999999999999875 789999999999999988653221 111
Q ss_pred CCCcCCCCCceEEEEcCCC-CEEEE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCC-CEEEEEEcCCcEEEEe
Q 001367 929 DGVMTLAPSETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 929 ~~~~~~~~~i~~l~fs~dg-~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg-~~l~t~~~dg~v~iwd 1005 (1091)
..+. ..+.+++|+|++ .+|++ +.|+.|++||+.+++.+.. +.+|...|++++|+|++ ++|++++.||+|+|||
T Consensus 223 ~~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 223 CASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp TTCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred cccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 2222 268999999985 56777 5789999999999998877 56789999999999998 5799999999999999
Q ss_pred CCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1006 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
+.+++.+..+. |...|+ +++|+|.|+.+|++|+.||+|++|+++..+
T Consensus 299 ~~~~~~~~~~~---------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 299 ADFSEVFRDLS---------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TTSCEEEEECC---------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCCCcEeEECC---------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 99998774432 455565 678999778999999999999999997654
No 25
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.2e-37 Score=336.84 Aligned_cols=295 Identities=18% Similarity=0.311 Sum_probs=261.0
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
....++.+|.+.|++++|+|+|+ ++|+|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 45678899999999999999998 679999999999999999887654 6789999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|+.|++||+.+++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987554 6789999999999999999 8999999999999999999999999999
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
..+|.+++|++ ++.++++++.||.|++||+.+.+....+. .+...+..++|+|+++++++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 99999999954 67899999999999999999887766554 45567999999999999999886 6679999999
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE--
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-- 641 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-- 641 (1091)
+++.+..+.++......+......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEcc
Confidence 9999999988773333344444457788999999999999999999999999887654 689999999999999997
Q ss_pred CCCeEEEEECC
Q 001367 642 NENRIKILETP 652 (1091)
Q Consensus 642 ~dg~i~iwd~~ 652 (1091)
.|+.|++|+.+
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.1e-38 Score=348.82 Aligned_cols=294 Identities=13% Similarity=0.149 Sum_probs=238.6
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcC------CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~------dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..|...|++++|||||+ +||+|+. |++|++|+..++........ ...+|...|.+++|
T Consensus 39 ~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~~ 102 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVAW 102 (357)
T ss_dssp -CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEEE
T ss_pred ccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEEE
Confidence 57999999999999998 6788887 67899999888765432111 14468899999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccce-eEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1091)
+|++++| +++.||+|+|||+.+++.... .....+|...|.+++|+|+++ +|++++.|+.|++||+.+++++..+.+
T Consensus 103 s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 103 VSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp ETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred cCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 9998655 577899999999998865432 224558999999999999999 899999999999999999999999999
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee--cCCCCcEEEEEEcCCC-CEEEEEecCCCCceEEEEE
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iw 560 (1091)
|...|++++|++..+ .++++++.||.|++||+++.+....+ ..+...+.+++|+|++ .++++++. ++.|++|
T Consensus 180 h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~w 254 (357)
T 4g56_B 180 HSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLV 254 (357)
T ss_dssp CSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEE
T ss_pred CCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEE
Confidence 999999999976533 47899999999999999988766544 3456679999999985 56777765 5669999
Q ss_pred ecCCceeeEEEecccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc-CCCEEE
Q 001367 561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLA 638 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~ 638 (1091)
|+.+++.+..+.++. ..|.+++|+|++ ++|++++.|++|+|||+++++.+..+ .| ...|.+++|+| ++++|+
T Consensus 255 d~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H--~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 255 NIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH--RDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp ESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC--SSCEEEEEECSSSTTEEE
T ss_pred ECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC--CCCEEEEEEeCCCCCEEE
Confidence 999999999999887 899999999987 57889999999999999999888765 33 34799999998 899999
Q ss_pred EEECCCeEEEEECCCC
Q 001367 639 VIANENRIKILETPES 654 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~~ 654 (1091)
+++.||+|++|++.+.
T Consensus 329 s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEETTSCEEEEECC--
T ss_pred EEcCCCeEEEEECCCC
Confidence 9999999999999754
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3e-37 Score=340.79 Aligned_cols=299 Identities=14% Similarity=0.123 Sum_probs=238.5
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEecccccc-ceeeeeecCCCccEEEEEECCCCC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM-LFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
..|...|.+++|||||+ +|++++ |+++++||... .+|+...... .-.......|...|.+++|+||+
T Consensus 27 ~~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~- 94 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER- 94 (344)
T ss_dssp SSCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-
T ss_pred ccccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-
Confidence 35666899999999998 667776 67888887321 1111100000 00001123366789999999985
Q ss_pred EEEEEECCCEEEEEEeeCCccccee-EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 488 (1091)
+|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|...|
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 7889999999999999998765432 24568999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec--CCCCcEEEEEEcCCC-CEEEEEecCCCCceEEEEEecCCc
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
.+++|++... .++++++.|++|++||+++.+....+. .+...+.+++|+|++ +++++++. ++.|++||++++
T Consensus 173 ~~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~ 247 (344)
T 4gqb_B 173 TCVAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKST 247 (344)
T ss_dssp EEEEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC-
T ss_pred EEEEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCC
Confidence 9999976432 478999999999999999988877654 345578999999954 56777765 678999999999
Q ss_pred eeeEEEecccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC-EEEEEECC
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANE 643 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~d 643 (1091)
+.+..+.+|. ..|.+++|+|++ ++|++|+.|++|++||+.+++++. +..| ...|.+++|+|+++ +|++++.|
T Consensus 248 ~~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 248 SCVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp -CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETT
T ss_pred cEEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCC
Confidence 9999999988 899999999998 578899999999999999988654 4444 34799999999886 67799999
Q ss_pred CeEEEEECCCC
Q 001367 644 NRIKILETPES 654 (1091)
Q Consensus 644 g~i~iwd~~~~ 654 (1091)
++|++|++.+.
T Consensus 322 ~~v~~w~v~~~ 332 (344)
T 4gqb_B 322 HQVVHHVVPTE 332 (344)
T ss_dssp SCEEEEECCC-
T ss_pred CeEEEEECCCC
Confidence 99999999865
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=344.07 Aligned_cols=296 Identities=13% Similarity=0.157 Sum_probs=226.6
Q ss_pred ccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC
Q 001367 732 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 811 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 811 (1091)
+...|.+++|+|||+.|++++ ++++++|+... .+|+................+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 567799999999999776655 77888887321 11111000000000000012567899999999
Q ss_pred CCCEEEEEeCCeEEEEEccCceeEEE----ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCC
Q 001367 812 NDAYLFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 887 (1091)
Q Consensus 812 dg~~la~~~dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~ 887 (1091)
++.+++.+.||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 97655444489999999998876543 347999999999999 8999999999999999999999999999999999
Q ss_pred eEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCC-CCEEEE-EecCeEEEEEcC
Q 001367 888 VTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAE 964 (1091)
Q Consensus 888 V~~l~~spdg-~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~d-g~~la~-~~d~~i~vwd~~ 964 (1091)
|++++|+|++ .+|++++.|++|++||+.+++.... +. ...+. ..+.+++|+|+ +++|++ +.|+.|++||++
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~-~~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IG-CSAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeee--ee-cceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 9999999998 5789999999999999998663321 11 11121 25889999995 567777 578999999999
Q ss_pred CcceeeeeecCCccCEEEEEEeeCC-CEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCC
Q 001367 965 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1043 (1091)
Q Consensus 965 ~~~~~~~~~~~h~~~v~~v~fs~dg-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1043 (1091)
+++++.. +.+|...|++++|+||| ++|++++.||+|+|||+.+++... +. .|...|+ +++|+|++..
T Consensus 246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--------~H~~~V~--~v~~sp~~~~ 313 (344)
T 4gqb_B 246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--------AHRDFVR--DATWSPLNHS 313 (344)
T ss_dssp C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--------CCSSCEE--EEEECSSSTT
T ss_pred CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--------CCCCCEE--EEEEeCCCCe
Confidence 9999887 56899999999999998 579999999999999999987653 21 2456666 6789996556
Q ss_pred eEEEEecCCcEEEEecCCC
Q 001367 1044 QFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 1044 ~l~~g~~dg~v~~w~~~~~ 1062 (1091)
+|++|+.||+|++|++...
T Consensus 314 llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEEETTSCEEEEECCC-
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 7889999999999999653
No 29
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-37 Score=356.28 Aligned_cols=341 Identities=13% Similarity=0.181 Sum_probs=282.3
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEc----CCCCceeeeceeEEecccccccee-eeeecCCCccEEEEEEC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQKLFIRNFKVWDIGACSMLFK-TALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~l~~s 405 (1091)
..|.+.|++++|+|+|+.+||+|+.||.|++||+ .+++.+..... ...+ ..++. .....+|...|++++|+
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAEL---RHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEE---ECCCCCC------CBCEEEEEEC
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-cccc---cccccccccccCCCCceEEEEEc
Confidence 3455899999999999845699999999999999 88873211000 0000 00000 00122378899999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
|++++|++++.|+.|++|| .+++.+ ..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..+.
T Consensus 118 ~~~~~l~~~~~dg~i~i~~-~~~~~~---~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 191 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWN-KTGALL---NVLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFELKE 191 (425)
T ss_dssp TTSSEEEEEETTSCEEEEE-TTSCEE---EEECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECCC-
T ss_pred CCCCEEEEEeCCCeEEEEe-CCCCee---eeccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeeccc
Confidence 9999999999999999999 444433 36789999999999999999 89999999999999999999999998887
Q ss_pred cc---------------eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 486 AP---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 486 ~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
.. +.+++|++. ..+++++.+|.|++||+........+..+...+.+++|+|++++|++++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 267 (425)
T 1r5m_A 192 TGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD- 267 (425)
T ss_dssp --------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET-
T ss_pred cCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC-
Confidence 77 888888653 36999999999999999999888888899999999999999999999986
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
++.|++||+.+++.+..+..+. ..|.+++|+|++ .+++++.|+.|++||+.+++.+..+..+.. .+.+++|
T Consensus 268 ---d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~ 338 (425)
T 1r5m_A 268 ---DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGRI 338 (425)
T ss_dssp ---TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEEE
T ss_pred ---CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEEE
Confidence 5669999999999998888777 899999999999 999999999999999999999998887654 6899999
Q ss_pred ccCCCEEEEEECCCeEEEEECCCCC--------------------eecccccccc--cceeeeeccccccccccccCCcc
Q 001367 631 NKNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSV 688 (1091)
Q Consensus 631 s~~~~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~g~~ 688 (1091)
+|++++|++++.||.|++|++.++. .+..+..|.. .|.+++|
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------- 402 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW---------------- 402 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE----------------
T ss_pred cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc----------------
Confidence 9999999999999999999999877 7778888866 8999988
Q ss_pred cCCCCCCCCCccccccccccccccccc
Q 001367 689 SNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 689 ~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|+++.+++++.|+.|++|++.
T Consensus 403 -----s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 403 -----NCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -----CTTSSEEEEEESSSCCEEEECC
T ss_pred -----cCCCceEEEEecCceEEEEeec
Confidence 7888999999999999999974
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-36 Score=338.82 Aligned_cols=287 Identities=15% Similarity=0.171 Sum_probs=260.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|...|.+++|+||+++||+|+.|++|+|||..+++... .+..|...|.+++|+|+|. ++++++.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 77899999999999999999999999999999998876444 5678999999999999999 899999999999999
Q ss_pred CCCC------ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcC--CCCE
Q 001367 472 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR 543 (1091)
Q Consensus 472 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--d~~~ 543 (1091)
+... .....+.+|...|.+++|++ ++..|++++.|++|++||+++++....+..|...+.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8643 34567788999999999954 567999999999999999999999999999999999999987 5789
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1091)
+++++. ++.|++||+.+++.+..+.+|. ..|.+++|+|+++.+++++.|++|++||+.+++.+..+..+....
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 999986 6679999999999999998887 899999999999999999999999999999998887776655445
Q ss_pred CCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccc
Q 001367 624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISV 703 (1091)
Q Consensus 624 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~ 703 (1091)
.+.+++|+|++++|++++.|+.|++||+.++..+..+.+|...|.+++| +|+++.++++
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~---------------------spdg~~l~sg 344 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRV---------------------SPDGTAFCSG 344 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEE---------------------CTTSSCEEEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEE---------------------CCCCCEEEEE
Confidence 6789999999999999999999999999999999999999999999999 8889999999
Q ss_pred cccccccccc
Q 001367 704 EAENKSEVEK 713 (1091)
Q Consensus 704 ~~d~~i~~w~ 713 (1091)
+.|++|++|+
T Consensus 345 s~D~~v~vW~ 354 (354)
T 2pbi_B 345 SWDHTLRVWA 354 (354)
T ss_dssp ETTSEEEEEC
T ss_pred cCCCCEEecC
Confidence 9999999996
No 31
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-36 Score=333.74 Aligned_cols=297 Identities=17% Similarity=0.199 Sum_probs=233.8
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeee-cC-CCccEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RD-PGVSVNRV 402 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~V~~l 402 (1091)
+++++|.+|.+.|++++|+|+ +||+|+.|++|+|||+.++..... ..+ .+ |...|.++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~-----------------~~~~~~~h~~~v~~v 64 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-----------------DVLDETAHKKAIRSV 64 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE-----------------EEECTTCCCSCEEEE
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE-----------------EEEecCCccCCEEEE
Confidence 467889999999999999997 679999999999999987642211 013 34 99999999
Q ss_pred EECCCCCEEEEEECCCEEEEEEeeCCc----ccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC----
Q 001367 403 VWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---- 474 (1091)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---- 474 (1091)
+|+|++++||+|+.|++|+|||+..+. .......+.+|...|.+++|+|+++ +|++++.|++|++||+..
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCC
Confidence 999999999999999999999996432 1233446789999999999999999 899999999999999943
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC--CceeeecCCCCcEEEEEEcCC--CCEEEEEecC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTS 550 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~ 550 (1091)
.+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +..|++++.
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~- 219 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD- 219 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred eEEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence 256778899999999999965 5679999999999999998765 456678889999999999998 678888886
Q ss_pred CCCceEEEEEecCCc--------eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee--EEEEeCCC
Q 001367 551 KEGESFLVEWNESEG--------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGG 620 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~ 620 (1091)
++.|++||+.++ .....+.+. |...|.+++|++++ .+++++.||.|++|+..+++. .... ...
T Consensus 220 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~ 292 (330)
T 2hes_X 220 ---DSTVRVWKYMGDDEDDQQEWVCEAILPDV--HKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALC 292 (330)
T ss_dssp ---TSCEEEEEEEEECTTSCEEEEEEEECCSC--CSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCT
T ss_pred ---CCeEEEEEecCCCccccceeEEeeecccc--cccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-ccc
Confidence 667999998765 333444431 24889999999764 899999999999999988743 3232 122
Q ss_pred CCC-CCceEEEcc--CCCEEEEEECCCeEEEEECCC
Q 001367 621 GLP-ENPRICFNK--NGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 621 ~~~-~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
+.. .|.+++|+| ++++|++++.||+|++|++..
T Consensus 293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 223 689999999 789999999999999999864
No 32
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.6e-36 Score=337.32 Aligned_cols=302 Identities=17% Similarity=0.273 Sum_probs=244.6
Q ss_pred hheeeecccCCCCcEEEEE-----cC-CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc
Q 001367 324 KTVAQTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~f-----sp-dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1091)
..+..+|.+|++.|++++| +| |++ +||+|+.|++|+|||+.+++.... .......+.+|..
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~ 77 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNH 77 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSS
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCC
Confidence 3567789999999999999 77 887 789999999999999986543211 0011223789999
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1091)
.|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.. ..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~ 151 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-EC 151 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cc
Confidence 99999999999999999999999999999986554 6789999999999999999 899999999999999874 44
Q ss_pred eEEec---CCCcceEEEeecccCC--------ceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEE
Q 001367 478 TYSFE---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1091)
Q Consensus 478 ~~~~~---~~~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 546 (1091)
..... +|...|.+++|++... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE
Confidence 43433 7889999999976532 268999999999999994 44556677889999999999999999999
Q ss_pred EecCCCCceEEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEE--EEeCC----
Q 001367 547 CGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG---- 619 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~---- 619 (1091)
++. ++.|++||+.. ......+.. . ..|.+++|+|++.++++ +.|+.|++||+.+++... .+...
T Consensus 231 gs~----dg~v~iwd~~~~~~~~~~~~~-~---~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 231 GGK----DKKLLIWDILNLTYPQREFDA-G---STINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp EET----TCEEEEEESSCCSSCSEEEEC-S---SCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred EcC----CCeEEEEECCCCcccceeecC-C---CcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchh
Confidence 986 67799999944 444444432 2 57999999999887654 467889999998876544 33211
Q ss_pred -----CCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 620 -----GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 620 -----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
++...+.+++|+|++++|++|+.||.|++|++.++
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 23446889999999999999999999999997643
No 33
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-36 Score=348.38 Aligned_cols=328 Identities=16% Similarity=0.226 Sum_probs=263.4
Q ss_pred cCCCccEEEEEECCCCC-EEEEEECCCEEEEEEe----eCCccc---ceeEEEec----------cccCeeEEEEcCCCC
Q 001367 393 RDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAY----HGGSDA---RQQLEIDA----------HVGNVNDLAFSAPCK 454 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~----~~~~~~---~~~~~~~~----------h~~~v~~~~~s~d~~ 454 (1091)
..|...|.+++|+|+|+ +||+|+.|+.|++|++ .+++.+ .....+.. |...|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34678999999999999 9999999999999999 877620 01112333 688999999999999
Q ss_pred ceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCc---
Q 001367 455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG--- 531 (1091)
Q Consensus 455 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--- 531 (1091)
+|++++.||.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.+......+..+...
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 899999999999999 78888999999999999999955 6679999999999999999998888877777666
Q ss_pred ------------EEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC
Q 001367 532 ------------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1091)
Q Consensus 532 ------------i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d 599 (1091)
+.+++|++++. +++++. ++.|++||+.+++.+..+..|. ..|.+++|+|+++++++++.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d 268 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHH---GPISVLEFNDTNKLLLSASDD 268 (425)
T ss_dssp ---------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCS---SCEEEEEEETTTTEEEEEETT
T ss_pred eeeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCC---CceEEEEECCCCCEEEEEcCC
Confidence 89999999865 556654 6679999999999888888777 899999999999999999999
Q ss_pred CeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccc
Q 001367 600 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679 (1091)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 679 (1091)
+.|++||+.+++.+..+..
T Consensus 269 ~~i~i~d~~~~~~~~~~~~------------------------------------------------------------- 287 (425)
T 1r5m_A 269 GTLRIWHGGNGNSQNCFYG------------------------------------------------------------- 287 (425)
T ss_dssp SCEEEECSSSBSCSEEECC-------------------------------------------------------------
T ss_pred CEEEEEECCCCccceEecC-------------------------------------------------------------
Confidence 9999999887633322221
Q ss_pred cccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEE
Q 001367 680 GAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 759 (1091)
Q Consensus 680 ~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~v 759 (1091)
T Consensus 288 -------------------------------------------------------------------------------- 287 (425)
T 1r5m_A 288 -------------------------------------------------------------------------------- 287 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEe
Q 001367 760 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI 838 (1091)
Q Consensus 760 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~ 838 (1091)
|...+.+++|+|++ ++++++ ++.|++||+.+++.+..+
T Consensus 288 ----------------------------------------~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~ 326 (425)
T 1r5m_A 288 ----------------------------------------HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS 326 (425)
T ss_dssp ----------------------------------------CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ----------------------------------------CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec
Confidence 23334444555555 444443 455666666666666666
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc--------------------eeeeeccccC--CeEEEEECCC
Q 001367 839 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------VISKLEGHSK--RVTGLVFSDA 896 (1091)
Q Consensus 839 ~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~spd 896 (1091)
..|...+.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|+
T Consensus 327 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 405 (425)
T 1r5m_A 327 IVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA 405 (425)
T ss_dssp ECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred ccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence 66777888899998 78889999999999999998887 8899999976 9999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 001367 897 LNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 897 g~~las~s~Dg~i~vwd~~~ 916 (1091)
+++|++++.||.|++||++.
T Consensus 406 ~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 406 GNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp SSEEEEEESSSCCEEEECCC
T ss_pred CceEEEEecCceEEEEeecC
Confidence 99999999999999999863
No 34
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.9e-36 Score=341.79 Aligned_cols=303 Identities=15% Similarity=0.232 Sum_probs=246.3
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
+|.+.|++++|||||+ +||+|+ +++++||++.+|+.+.......-... ....+.......+...|.+++|+|||++|
T Consensus 62 ~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANK-DPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccccc-ccccccccccCCCceeEEEEEECCCCCEE
Confidence 6999999999999998 668876 68999999999987754211000000 00000000111234469999999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1091)
|+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.++++...+. +...+.++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 999999999999999876544 6789999999999999999 89999999999999999999888776 56678999
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeee-------cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
++++. ++.++++++.||.|++||++++.....+ ..|...|.+++|+|++++|++++. ++.|++||+.+
T Consensus 213 ~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQN 287 (393)
T ss_dssp EECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC--
T ss_pred EEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCC
Confidence 98653 6689999999999999999988766555 467789999999999999999986 67799999876
Q ss_pred c------------eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 565 G------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 565 ~------------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
. .+...+.+|. ..|.+++|+|++.++++|+.|+.|++||..+++.+..+..|.. .|.+++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~~~~ 362 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVAVAN 362 (393)
T ss_dssp -------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECS
T ss_pred CCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEEecC
Confidence 3 3445666666 8899999999999999999999999999999999999887755 689999876
Q ss_pred ------CCCEEEEEECCCeEEEEECCC
Q 001367 633 ------NGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 633 ------~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
++++|++|+.||+|++|++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999764
No 35
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-36 Score=330.01 Aligned_cols=269 Identities=19% Similarity=0.251 Sum_probs=241.9
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
++.+|...|.+++|+|++++||+++.||+|++||+.++..++ .+..|..+|.+++|+|+++ +|++|+.|++|++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEE
Confidence 377899999999999999999999999999999999986554 6788999999999999999 89999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc-eeeecCCCCcEEEEEEcC-CCCEEEEEe
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCG 548 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~-d~~~l~~~~ 548 (1091)
|+.+++++..+.+|...|.+++|+| ++.+|++++.||+|++||+++... ...+..|...|.+++|+| ++..+++++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9999999999999999999999965 567999999999999999988744 456788999999999999 678999988
Q ss_pred cCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCc
Q 001367 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 626 (1091)
. ++.|++||+.++.....+..+. ...+..+.|+| ++.++++++.|++|++||+.+++.+..+..|.. .|.
T Consensus 161 ~----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~ 232 (304)
T 2ynn_A 161 L----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVS 232 (304)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEE
T ss_pred C----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEE
Confidence 6 6779999998887766665433 36788999986 678999999999999999999999999987755 689
Q ss_pred eEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecc
Q 001367 627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNP 674 (1091)
Q Consensus 627 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 674 (1091)
+++|+|++++|++++.||+|++||..+++....+..+...+.+++++|
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 999999999999999999999999999999999999999999999853
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=356.97 Aligned_cols=356 Identities=13% Similarity=0.177 Sum_probs=275.1
Q ss_pred CCcEEEEEcCCCceEEEEE----------cCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg----------~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..|.+++|||+|+.++|+| +.|+.|+|||+.+++..... ....|...|.+++|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~-----------------~~~~~~~~v~~~~~ 75 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI-----------------ASLQVDSKFNDLDW 75 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS-----------------CCCCCSSCEEEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE-----------------EEEecCCceEEEEE
Confidence 4899999999998688999 88999999999988633110 02358899999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcc-cceeEEEeccccCeeEEEEcCC-CCceEEEEeeCCCcEEEEeCCCCc------
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS------ 476 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~------ 476 (1091)
+|++++|++++.|+.|++||+.+... ......+.+|...|.+++|+|+ ++ +|++++.|+.|++||+.+++
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccc
Confidence 99999999999999999999987211 1234467899999999999998 66 79999999999999999887
Q ss_pred eeE---EecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC------CCcEEEEEEcCCC-CEEEE
Q 001367 477 RTY---SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLFS 546 (1091)
Q Consensus 477 ~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~d~-~~l~~ 546 (1091)
... .+..|...|.+++|++. ++.++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .++++
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred cccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 333 34679999999999654 2579999999999999999998888877776 6789999999997 57777
Q ss_pred EecCCCCceEEEEEecCCc-eeeEEEe-cccccccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001367 547 CGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 623 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~v~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 623 (1091)
++.++ .++.|++||+.++ ..+..+. +|. ..|.+++|+| +++++++++.||.|++||+.+++.+..+..+..
T Consensus 233 ~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-- 306 (416)
T 2pm9_A 233 ATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-- 306 (416)
T ss_dssp EECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS--
T ss_pred EECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC--
Confidence 76532 1237999999986 5666676 666 8999999999 899999999999999999999999999987654
Q ss_pred CCceEEEccCC-CEEEEEECCCeEEEEECCCCCeeccccc--ccccceeeeeccccccccc------------cccCCcc
Q 001367 624 ENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTGA------------GIANGSV 688 (1091)
Q Consensus 624 ~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~------------~~~~g~~ 688 (1091)
.|.+++|+|++ .++++++.|+.|++|++.+......... .........+.+.+...+. ......+
T Consensus 307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (416)
T 2pm9_A 307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPS 386 (416)
T ss_dssp CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCS
T ss_pred ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCc
Confidence 68999999998 8999999999999999987754433211 0000000001000000000 0011122
Q ss_pred cCCCCCCCCCcccccccccccccccccc
Q 001367 689 SNEDPKEDVKPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 689 ~~~~~s~~~~~l~s~~~d~~i~~w~~~~ 716 (1091)
....++|+|+++++++.|++|++|++..
T Consensus 387 ~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 387 PAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred cceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 2334489999999999999999999863
No 37
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3.1e-35 Score=376.28 Aligned_cols=523 Identities=13% Similarity=0.057 Sum_probs=376.4
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
+...+.+.+|||+ ++ |..+. +.|.+|++.+|+... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~i-af~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--RI-IFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--EE-EEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--EE-EEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4558999999974 45 44443 789999998886543 667999999999999999999
Q ss_pred EEECC------CEEEEEEeeCCcccceeEEEeccccCe-------eEEEEcCCCCceEEEEeeCC------CcEEEEeCC
Q 001367 413 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV 473 (1091)
Q Consensus 413 s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~ 473 (1091)
+++.+ ..|++|++.+++. ..+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 3799999988752 2567888888 9999999998 67777754 468888887
Q ss_pred CCceeEEecCCCcceEEEeecccCCceEEEEEec------------CCeEEEEecCCCCceeeecCCCCcEEEEEEcCCC
Q 001367 474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1091)
Q Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~ 541 (1091)
+++.. .+..+. ...++|++ | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77653 333332 34556754 5 7777653 344667754444555566788889999999988
Q ss_pred CEEEEEecCCCCceEEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001367 542 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1091)
..++++.. ++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+. ++.|++|++...+. ..+..+.
T Consensus 215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l-~~l~~~~ 284 (1045)
T 1k32_A 215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI-EKIEIGD 284 (1045)
T ss_dssp EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE-EECCCCC
T ss_pred EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCceEe-eeeccCc
Confidence 44444432 33355565432 33334444433 356679999999988874 89999999955443 3444321
Q ss_pred ---------CCCCCceEEEc-cCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccC
Q 001367 621 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSN 690 (1091)
Q Consensus 621 ---------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~ 690 (1091)
+...+..++|+ |||+++++++ ++.+++|+..++.... +.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~----------------------------- 333 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP----------------------------- 333 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence 11247899999 9999999888 6889999876543211 10
Q ss_pred CCCCCCCCcccccccccccccccccccCCcccceeecCCccccc-cEEEEEEecCCCeEEEeecCceEE-EeecCCcccc
Q 001367 691 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDLT 768 (1091)
Q Consensus 691 ~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l~~~~~dg~i~-vw~~~~~~~~ 768 (1091)
.+.. .+..++|+ ||+.++.++.++.+. +|++...
T Consensus 334 ----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~--- 369 (1045)
T 1k32_A 334 ----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG--- 369 (1045)
T ss_dssp ----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC---
T ss_pred ----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC---
Confidence 0223 67788889 888888888777777 7775432
Q ss_pred cccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEE
Q 001367 769 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATS 847 (1091)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~ 847 (1091)
. ... +. ++...+..++|||||++|++++ ++.|++||+.+++....+..|...+.+
T Consensus 370 -------------------~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~ 425 (1045)
T 1k32_A 370 -------------------K-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 425 (1045)
T ss_dssp -------------------C-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred -------------------C-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc
Confidence 1 111 11 3667899999999999999988 689999999999988888788889999
Q ss_pred EEEcCCCCcEEEEEeCCC----------eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 001367 848 LAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 917 (1091)
Q Consensus 848 l~~s~~~~~~la~g~~dg----------~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~ 917 (1091)
++||| ||++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|+....
T Consensus 426 ~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 426 FTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp EEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred eEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence 99999 899888887644 99999999887 6778888888999999999999999999888888876433
Q ss_pred ceeee-----eee--e---------------------ccCCC-------cCCCCCceEEEEcCCCCEEEE----------
Q 001367 918 GIQTC-----RSL--Q---------------------TPDGV-------MTLAPSETHIQFHKDQTRFLL---------- 952 (1091)
Q Consensus 918 ~~~~~-----~~~--~---------------------~~~~~-------~~~~~~i~~l~fs~dg~~la~---------- 952 (1091)
..... ..+ . ...+. ......+..++|+|||+++++
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~ 583 (1045)
T 1k32_A 504 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY 583 (1045)
T ss_dssp CEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHH
T ss_pred ccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCccccc
Confidence 22000 000 0 00110 001135789999999998875
Q ss_pred --E--ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCc
Q 001367 953 --V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 953 --~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
+ ....+.+||+.+++.... . ..+.+++|||||++|++++.+ .|++||+.+++
T Consensus 584 ~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 584 YQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 234789999988875332 2 568899999999999998766 89999998887
No 38
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.9e-37 Score=347.27 Aligned_cols=290 Identities=15% Similarity=0.167 Sum_probs=255.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+|.+.|++++|+|++++||+|+.|++|+|||+.+++... .+.+|...|.+++|+|+|+ +|++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 78999999999999999999999999999999999886544 6789999999999999999 899999999999999
Q ss_pred CCCCc-------eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee-----cCCCCcEEEEEEcC
Q 001367 472 AVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA 539 (1091)
Q Consensus 472 ~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~s~ 539 (1091)
+.+.. ....+.+|.+.|.++.|.+.. +..|++++.|++|++||+.++.....+ ..|...+.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 345678999999999997653 357999999999999999998877665 56778899999987
Q ss_pred -CCCEEEEEecCCCCceEEEEEecC-CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001367 540 -NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 540 -d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1091)
+++++++++. ++.|++||++ .+..+..+.+|. ..|.+++|+|++++|++++.||+|++||+.+++.+..+.
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 8889999986 6679999998 557788888887 899999999999999999999999999999999988876
Q ss_pred CCCC-----CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccc----ccccccceeeeeccccccccccccCCcc
Q 001367 618 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1091)
Q Consensus 618 ~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~g~~ 688 (1091)
.+.. ...+.+++|+|+|+++++|+.||.|++||...++....+ .+|...|.+++|
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~---------------- 352 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL---------------- 352 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE----------------
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE----------------
Confidence 5432 234789999999999999999999999999988776655 678899999999
Q ss_pred cCCCCCCCCCccccccccccccccccc
Q 001367 689 SNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 689 ~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|+++.+++++.|++|++|++.
T Consensus 353 -----s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 353 -----SSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp -----CSSSSEEEEECTTSCEEEEECC
T ss_pred -----CCCCCEEEEeeCCCCEEEEecC
Confidence 8889999999999999999976
No 39
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-35 Score=329.62 Aligned_cols=303 Identities=18% Similarity=0.263 Sum_probs=260.3
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+..+|+||++.|++|+|+|++..+||||+.||+|+|||+.+++.... .....+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEEEE
Confidence 455689999999999999998544889999999999999988765432 122337899999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee-EEecC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEG 483 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~ 483 (1091)
+|||++|++++.|+.|++|+...+.... ....+...+..+.+++++. ++++++.|+.+++||+...... ....+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999998875443 4567888899999999999 7999999999999998766543 44578
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
|...+..++|++.+...++++++.|+.|++||+.+.+....+..+...|.+++|+|++++|++++. ++.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence 999999999988877789999999999999999999999999999999999999999999999986 6779999999
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-------CCCCCCceEEEccCCCE
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-------GGLPENPRICFNKNGTL 636 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~ 636 (1091)
+++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+... .+...|.+++|+|++++
T Consensus 246 ~~~~~~~~~~~~----~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 246 EGKHLYTLDGGD----IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTEEEEEEECSS----CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred cCceeeeecCCc----eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 999988887644 799999999865 566677999999999998887766432 33457899999999999
Q ss_pred EEEEECCCeEEEEECCCCC
Q 001367 637 LAVIANENRIKILETPESN 655 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~ 655 (1091)
|++|+.||.|++||+.+|.
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 9999999999999998774
No 40
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-35 Score=325.16 Aligned_cols=296 Identities=21% Similarity=0.278 Sum_probs=251.9
Q ss_pred eecCCCccEEEEEECCCC-CEEEEEECCCEEEEEEeeCCcc--cceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcE
Q 001367 391 LVRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1091)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... ......+.+|...|.+++|+|+++ +|++++.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 488999999999999965 8999999999999999976432 123446889999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCC------C
Q 001367 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------G 541 (1091)
Q Consensus 468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d------~ 541 (1091)
++||+.+++.+..+.+|...|.+++|++ ++.++++++.|+.|++||++. .....+..|...+.++.++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999999999999999999999999954 668999999999999999864 556677888899999999985 4
Q ss_pred CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC
Q 001367 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 621 (1091)
..+++++. ++.|++||+.+++....+.+|. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+.
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 238 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD- 238 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS-
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-
Confidence 47888876 6679999999999998998887 899999999999999999999999999999999998887653
Q ss_pred CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccc
Q 001367 622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEI 701 (1091)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~ 701 (1091)
.+.+++|+|++.++++++.+ .+++|++.....+..+..+...
T Consensus 239 --~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~----------------------------------- 280 (319)
T 3frx_A 239 --EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG----------------------------------- 280 (319)
T ss_dssp --CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-----------------------------------
T ss_pred --cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-----------------------------------
Confidence 58999999999999988765 5999998765443332211000
Q ss_pred ccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecC
Q 001367 702 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 763 (1091)
Q Consensus 702 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~ 763 (1091)
....+...+.+++|+|||++|++++.||.|++|++.
T Consensus 281 --------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 281 --------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp --------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred --------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 001145678899999999999999999999999964
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.6e-36 Score=331.54 Aligned_cols=324 Identities=13% Similarity=0.163 Sum_probs=271.6
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
|.++|.+++|||||+ +++++..++.+.+|+......... ..+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 456899999999998 567777666666665433222211 447999999999999999999
Q ss_pred EEECCCEEEEEEeeCCcccceeEEEe--ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc--eeEEecCCCcce
Q 001367 413 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV 488 (1091)
Q Consensus 413 s~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v 488 (1091)
+++ |+.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999877655554555 7999999999999999 89999999999999999887 667788899999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+.+++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999965 6689999999999999999998888888889999999999999999999986 667999999999888
Q ss_pred EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEE
Q 001367 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1091)
..+.. . ..+.+++|+|+++++++++.++.|++||+.+++... +..+ ...+.+++|+|+++++++++.||.|++
T Consensus 219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCC--SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCC--ccceeEEEECCCCCEEEEecCCCcEEE
Confidence 77753 3 689999999999999999999999999999887653 3333 346899999999999999999999999
Q ss_pred EECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecC
Q 001367 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 728 (1091)
Q Consensus 649 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 728 (1091)
|++.+++.....
T Consensus 292 ~~~~~~~~~~~~-------------------------------------------------------------------- 303 (337)
T 1gxr_A 292 WRTPYGASIFQS-------------------------------------------------------------------- 303 (337)
T ss_dssp EETTTCCEEEEE--------------------------------------------------------------------
T ss_pred EECCCCeEEEEe--------------------------------------------------------------------
Confidence 999876443111
Q ss_pred CccccccEEEEEEecCCCeEEEeecCceEEEeec
Q 001367 729 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 762 (1091)
Q Consensus 729 ~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~ 762 (1091)
.+...+.+++|+|+++.+++++.||.+++|++
T Consensus 304 --~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 --KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp --ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred --cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 14456788888888888888888999998875
No 42
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=330.67 Aligned_cols=298 Identities=16% Similarity=0.198 Sum_probs=239.9
Q ss_pred cccc-cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEe
Q 001367 731 VKAN-KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 809 (1091)
Q Consensus 731 ~~~~-~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 809 (1091)
+|.. .|..++|+|+|++|++++.|+.+++|++..... .....+ ..+|...|.+++|
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~-~~~h~~~v~~~~~ 69 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVL-SEGHQRTVRKVAW 69 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEE-CSSCSSCEEEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeee-ccccCCcEEEEEE
Confidence 3665 899999999999999999999999999754321 000001 1258999999999
Q ss_pred cCCCCEEEEEe-CCeEEEEEccCc--eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc---eeeeecc
Q 001367 810 SKNDAYLFSAS-GGVISLYIVMTF--KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---VISKLEG 883 (1091)
Q Consensus 810 s~dg~~la~~~-dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~---~~~~l~~ 883 (1091)
+|+|++|++++ |+.+++|++.++ +++..+.+|...|.+++|+| ++++|++|+.|++|++||+.++. ++..+.+
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence 99999999998 899999998876 46788999999999999999 89999999999999999998763 4677889
Q ss_pred ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEE
Q 001367 884 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 962 (1091)
Q Consensus 884 h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd 962 (1091)
|...|.+++|+|++++|++++.|++|++||+.++.. .+...+.+|.. .|.+++|+|+|++|++ +.|++|++||
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 999999999999999999999999999999987542 23455667765 8999999999999999 5889999999
Q ss_pred cCCc---------------ceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCce----EEEeecccccCC
Q 001367 963 AEEL---------------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV----QCRILSTAYLRP 1023 (1091)
Q Consensus 963 ~~~~---------------~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~ 1023 (1091)
.... +++..+...|...|.+++|+|++.+|++++.|+.|++|+...+.. ...+. ....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~---~~~~ 299 (345)
T 3fm0_A 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT---AHLH 299 (345)
T ss_dssp EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE---EEET
T ss_pred cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE---eeec
Confidence 6322 233343344889999999999999999999999999999876532 11111 0011
Q ss_pred CCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1024 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1024 ~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
..|...|. +++|+|+++.+|++|+.||+|++|++....
T Consensus 300 ~~h~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 300 QAHSQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TSSSSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred ccccCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 12455565 789999655699999999999999997655
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.1e-35 Score=323.98 Aligned_cols=291 Identities=20% Similarity=0.286 Sum_probs=260.1
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
.+.+|...|++++|+|++++||+|+.|+.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 478999999999999999999999999999999998886544 6789999999999999999 89999999999999
Q ss_pred eCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
|+.+++++..+.+|...|.+++|++ ++.++++++.||.|++||+++.+....+..+..++.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9999999999999999999999965 6679999999999999999999988899999999999999999999999986
Q ss_pred CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
++.|++||+.+++.+..+.... ...+..++|+|+++++++++.|+.|++||+.+++.+..+..+..........+
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 5679999999998887765433 46799999999999999999999999999999999998887655333333444
Q ss_pred c-cCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccc--ccc
Q 001367 631 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVE--AEN 707 (1091)
Q Consensus 631 s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~--~d~ 707 (1091)
+ +++.++++++.||.|++||+.+++.+..+.+|...|.++++ +|+++.+++++ .|+
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~---------------------~p~~~~l~s~~~~~d~ 303 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC---------------------HPTENIIASAALENDK 303 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEE---------------------CSSSSEEEEEECTTTC
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEee---------------------cCcCCceEEEEccCCc
Confidence 4 67889999999999999999999999999999999999999 67788888876 689
Q ss_pred cccccccc
Q 001367 708 KSEVEKPL 715 (1091)
Q Consensus 708 ~i~~w~~~ 715 (1091)
+|++|+.+
T Consensus 304 ~i~~W~~d 311 (312)
T 4ery_A 304 TIKLWKSD 311 (312)
T ss_dssp CEEEEECC
T ss_pred cEEEecCC
Confidence 99999864
No 44
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=6.1e-34 Score=364.35 Aligned_cols=529 Identities=10% Similarity=0.022 Sum_probs=371.2
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC------CCcEE
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK 468 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~------d~~i~ 468 (1091)
+...+.+.+||| ++||.++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456788999995 58888876 68999999887532 4678999999999999999 5666543 34799
Q ss_pred EEeCCCCceeEEecCCCcce-------EEEeecccCCceEEEEEecC------CeEEEEecCCCCceeeecCCCCcEEEE
Q 001367 469 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1091)
+||+.+++ ...+..|...+ ..++|+| ||+++++++.+ ..|..|++..+........ ....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG---PATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC---SCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCC---Cccee
Confidence 99988876 67788888888 8899955 66677777754 3577777766544332222 23457
Q ss_pred EEcCCCCEEEEEecCCC--------CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001367 536 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~ 607 (1091)
+|+| | .++++....+ +.....+|....+.....+.+|. ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 7999 8 7777643211 12224444322223344556665 88999999988 56667778898899976
Q ss_pred CC-CeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCC
Q 001367 608 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 686 (1091)
Q Consensus 608 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g 686 (1091)
.. +.....+..+. .+..++|+|||++++.+. ++.|++|+..... +..+..+...
T Consensus 232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~-------------------- 286 (1045)
T 1k32_A 232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLE-------------------- 286 (1045)
T ss_dssp ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCC--------------------
T ss_pred eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCccc--------------------
Confidence 53 33444444333 357789999999998874 7899999984322 2121110000
Q ss_pred cccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEe-cCCCeEEEeecCceEEEeecCCc
Q 001367 687 SVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRN 765 (1091)
Q Consensus 687 ~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~dg~i~vw~~~~~ 765 (1091)
... .| ..+...+..++|+ |||+.+++++ ++.+.+|+....
T Consensus 287 --------------------~~~-~~-----------------~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~ 327 (1045)
T 1k32_A 287 --------------------SPE-DR-----------------IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT 327 (1045)
T ss_dssp --------------------BCC-SE-----------------EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS
T ss_pred --------------------ccc-cc-----------------cccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC
Confidence 000 00 0144567789999 9999888877 788888875432
Q ss_pred ccccccceeeccCCccccCCCCCceeeecCCCCCCCC-CeeEEEecCCCCEEEEEeC-CeEE-EEEccCceeEEEecCCC
Q 001367 766 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSASG-GVIS-LYIVMTFKTILTIMPPS 842 (1091)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~s~dg~~la~~~d-g~i~-iwd~~~~~~~~~~~~~~ 842 (1091)
. ... +. .+.. .+..++|+ ||+.++++++ +.+. +|++.+++... +..+.
T Consensus 328 ~-----------------------~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~ 378 (1045)
T 1k32_A 328 Y-----------------------VLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENL 378 (1045)
T ss_dssp B-----------------------EEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCC
T ss_pred c-----------------------eEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCc
Confidence 1 111 11 2455 78899999 9999999884 6688 88988776544 44777
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCC----------cEEEE
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFVW 912 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg----------~i~vw 912 (1091)
..+..++|+| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++ .|++|
T Consensus 379 ~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 379 GNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp CSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred cceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence 8999999999 899999999999999999999998888878999999999999999999887654 89999
Q ss_pred EcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcce-----------------------
Q 001367 913 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC----------------------- 968 (1091)
Q Consensus 913 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~----------------------- 968 (1091)
|+.+++ ...+..+.. .+..++|+|||++|+.+ .++...+|+......
T Consensus 458 d~~~g~------~~~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1045)
T 1k32_A 458 DMEGRK------IFAATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 528 (1045)
T ss_dssp ETTTTE------EEECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGC
T ss_pred ECCCCc------EEEeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCcccc
Confidence 999864 122233332 57789999999999884 445555554322111
Q ss_pred -------------------eeeeecCCccCEEEEEEeeCCCEEEE-------------EEcCCcEEEEeCCCCceEEEee
Q 001367 969 -------------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 969 -------------------~~~~~~~h~~~v~~v~fs~dg~~l~t-------------~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
....+..|.+.+..++|+|||+++++ ...+..|.+||+.+++.....
T Consensus 529 ~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~- 607 (1045)
T 1k32_A 529 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK- 607 (1045)
T ss_dssp CCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-
T ss_pred CcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-
Confidence 01112345678999999999987775 122457888999888754222
Q ss_pred cccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 1017 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1017 ~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
..+ ..++++| ||+.|++++.+ .|++|++....
T Consensus 608 -----------~~v--~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 -----------NNL--TDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp -----------EEE--EEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred -----------cCc--ceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 112 3568999 58999988866 89999996654
No 45
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=319.52 Aligned_cols=306 Identities=15% Similarity=0.177 Sum_probs=230.4
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeEEEEeCCCCCCCCceEEEccCCCEEEEEE
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 641 (1091)
+.+.+..+.+|. ..|.+++|+|+ +|++|+.|++|++||+.++ +....+....+...|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 455677788887 89999999987 8999999999999999875 4455553322445799999999999999999
Q ss_pred CCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcc
Q 001367 642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 721 (1091)
Q Consensus 642 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~ 721 (1091)
.|++|++|+........
T Consensus 78 ~D~~v~iw~~~~~~~~~--------------------------------------------------------------- 94 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT--------------------------------------------------------------- 94 (330)
T ss_dssp TTSCEEEEEC----------------------------------------------------------------------
T ss_pred CCCcEEEEEcccCcCcc---------------------------------------------------------------
Confidence 99999999975321000
Q ss_pred cceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCC
Q 001367 722 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 801 (1091)
Q Consensus 722 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1091)
.... + +.. + .+|.
T Consensus 95 ---------------------~~~~-~--------~~~-----------------------------------~--~~h~ 107 (330)
T 2hes_X 95 ---------------------FEMD-L--------LAI-----------------------------------I--EGHE 107 (330)
T ss_dssp ---------------------CCCE-E--------EEE-----------------------------------E--C---
T ss_pred ---------------------ccce-e--------EEE-----------------------------------E--cCCC
Confidence 0000 0 000 0 0367
Q ss_pred CCeeEEEecCCCCEEEEEe-CCeEEEEEccC----ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc-
Q 001367 802 EAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS- 875 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~- 875 (1091)
..|.+++|+|+|++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++.+|++|+.|++|++||..++
T Consensus 108 ~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~ 186 (330)
T 2hes_X 108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDD 186 (330)
T ss_dssp -CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC
Confidence 7788888888888888877 68888888732 356778889999999999999 8999999999999999999876
Q ss_pred -ceeeeeccccCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCce---eeeeeeeccCC-CcCCCCCceEEEEcCCCC
Q 001367 876 -EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQT 948 (1091)
Q Consensus 876 -~~~~~l~~h~~~V~~l~~spd--g~~las~s~Dg~i~vwd~~~~~~---~~~~~~~~~~~-~~~~~~~i~~l~fs~dg~ 948 (1091)
+++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+.++.. ....+.....+ |.. .|.+++|++++.
T Consensus 187 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~v~~s~~~~ 263 (330)
T 2hes_X 187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR---QVYNVAWGFNGL 263 (330)
T ss_dssp EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS---CEEEEEECTTSC
T ss_pred eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc---ceEEEEEcCCCE
Confidence 678899999999999999998 77999999999999999975321 11123333333 444 799999998775
Q ss_pred EEEEEecCeEEEEEcCCcc--eeeeeecCCcc-CEEEEEEee--CCCEEEEEEcCCcEEEEeCCC
Q 001367 949 RFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 949 ~la~~~d~~i~vwd~~~~~--~~~~~~~~h~~-~v~~v~fs~--dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
++..+.|+.|++||..+++ .......+|.. .|.+++|+| ++++|++++.||+|++|++..
T Consensus 264 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 264 IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 4444789999999998774 34444467876 899999999 789999999999999999865
No 46
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-36 Score=344.08 Aligned_cols=382 Identities=13% Similarity=0.136 Sum_probs=286.9
Q ss_pred EEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeee-cCCCccEEEEEECC-CCCEEEEEECCC
Q 001367 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSP-DGSLLGVAYSKH 418 (1091)
Q Consensus 341 ~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp-dg~~las~~~d~ 418 (1091)
.|+|+++ .+++++ .|+ .+|+.+.. + .+|...|++++|+| ++++||+|+.|+
T Consensus 34 ~f~~~~~-~~~~~~------~w~-~~g~~~~~-------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg 86 (437)
T 3gre_A 34 EFGPIQE-IVRSPN------MGN-LRGKLIAT-------------------LMENEPNSITSSAVSPGETPYLITGSDQG 86 (437)
T ss_dssp GGCCCCC-CCCCCC------GGG-CCCCEEEE-------------------ECTTTTSCEEEEEEECSSSCEEEEEETTS
T ss_pred hcCCccc-cccccc------ccc-ccceEEee-------------------eccCCCCceEEEEECCCCCCEEEEecCCc
Confidence 4789998 445544 377 45555543 4 78999999999999 999999999999
Q ss_pred EEEEEEeeC---CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC---CCceeEEecCCCcceEEEe
Q 001367 419 IVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLC 492 (1091)
Q Consensus 419 ~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~v~~~~ 492 (1091)
+|+|||+.+ +...+....+ +|...|.+++|+|+++ +|++++.||.|++||+. +++.+..+.+| .+..+.
T Consensus 87 ~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~ 161 (437)
T 3gre_A 87 VIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKIN 161 (437)
T ss_dssp EEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEE
T ss_pred eEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEE
Confidence 999999987 5433333333 5999999999999999 89999999999999994 77777776666 677776
Q ss_pred ecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEE--EcCCCCEEEEEecCCCCceEEEEEecCCceeeEE
Q 001367 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~--~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1091)
+++.+ +...+.++. +++++.++++++. ++.|++||+.+++.+..
T Consensus 162 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 162 LKNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQI 207 (437)
T ss_dssp GGGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEE
T ss_pred ccCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEE
Confidence 65431 112334444 6789999999986 67799999999999999
Q ss_pred Eec--ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc----cCCCEEEEEECCC
Q 001367 571 YQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIANEN 644 (1091)
Q Consensus 571 ~~~--~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~dg 644 (1091)
+.+ |. ..|.+++|+|+++++++|+.||.|++||+++++.+..+..... ..|.+++|+ +++.+|++++.||
T Consensus 208 ~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 208 IENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp EECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred EccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcCCC
Confidence 988 55 8999999999999999999999999999999999988863322 368899555 5688999999999
Q ss_pred eEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccce
Q 001367 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 724 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 724 (1091)
.|++||+.+++.+..+.++...+..+.++| +++.+...
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~l~~~--------------------- 321 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLP---------------------IEKGLEEL--------------------- 321 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSC---------------------BCSSGGGC---------------------
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceecc---------------------cccccccc---------------------
Confidence 999999999988888887776666555532 22211000
Q ss_pred eecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCe
Q 001367 725 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 804 (1091)
Q Consensus 725 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 804 (1091)
. +.+..|...|
T Consensus 322 -------------------------------~--------------------------------------~~~~~~~~~v 332 (437)
T 3gre_A 322 -------------------------------N--------------------------------------FCGIRSLNAL 332 (437)
T ss_dssp -------------------------------C--------------------------------------CCCCCSGGGG
T ss_pred -------------------------------e--------------------------------------ecccccCCce
Confidence 0 0001267788
Q ss_pred eEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCC---CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee
Q 001367 805 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 880 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~ 880 (1091)
.+++|+ ++++|++++ |+.|++||+.+++....+.+|. .......+++ ...+++.. |+...+.....
T Consensus 333 ~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~ 402 (437)
T 3gre_A 333 STISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDD 402 (437)
T ss_dssp CCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC---------
T ss_pred EEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCc
Confidence 999999 778888887 8999999999999988888754 3455666666 55444433 33344455566
Q ss_pred eccccCCeEEEEECCC--CCEEEEEeCCCcEEEEE
Q 001367 881 LEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD 913 (1091)
Q Consensus 881 l~~h~~~V~~l~~spd--g~~las~s~Dg~i~vwd 913 (1091)
...|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 403 ~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 403 SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 6779999999999988 78999999999999995
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.7e-35 Score=338.66 Aligned_cols=347 Identities=13% Similarity=0.116 Sum_probs=280.6
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++++.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345579999999999999999999999999876554 23344 4455567899999 89999999999999999999
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
....+.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 9999899999999999965 6679999999999999999999999999999999999999999999999986 566
Q ss_pred EEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCE
Q 001367 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1091)
|++||+.+++.+..+..+..+...+.+++|.|.+...+ .. .....+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL---------------------HE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC---------------------GG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee---------------------ee--cccCcccceEEcCCCCE
Confidence 99999999999999988766678899998877643220 01 11235788999999999
Q ss_pred EEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccc
Q 001367 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~ 716 (1091)
+++++.||.|++||+.++.....+.
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~~~------------------------------------------------------- 286 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQLP------------------------------------------------------- 286 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC-------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeEEcc-------------------------------------------------------
Confidence 9999999999999987543221100
Q ss_pred cCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCC
Q 001367 717 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 796 (1091)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1091)
T Consensus 287 -------------------------------------------------------------------------------- 286 (420)
T 3vl1_A 287 -------------------------------------------------------------------------------- 286 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEecCCCC-EEEEEe-CCeEEEEEccCcee-EEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEec
Q 001367 797 DSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 797 ~~~~~~~v~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~ 872 (1091)
.+|...|.+++|+|++. ++++++ ||.|++||+.+++. +..+.. +...+.++.+. ++++|++++.||.|++|++
T Consensus 287 -~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 287 -SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp -CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEE
T ss_pred -cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEec
Confidence 01455677777777777 777776 57788888877643 555655 56677888654 5789999999999999999
Q ss_pred cCc---------ceeeeeccccCCeEEEEECCCCC---EEEEEeCCCcEEEEEcCC
Q 001367 873 RSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 873 ~~~---------~~~~~l~~h~~~V~~l~~spdg~---~las~s~Dg~i~vwd~~~ 916 (1091)
.+. .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 873 22334667889999999999999 788888999999999875
No 48
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.7e-34 Score=319.36 Aligned_cols=320 Identities=14% Similarity=0.143 Sum_probs=262.1
Q ss_pred cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC
Q 001367 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1091)
Q Consensus 440 h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 519 (1091)
|.++|.+++|+|||+ +++++..++.+.+|+...........+|...|.+++|+ +++.++++++ ||.|++||+.+.
T Consensus 8 ~~~~v~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~~~~-dg~i~iw~~~~~ 82 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ--MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTIS--NPTRHVYTGG-KGCVKVWDISHP 82 (337)
T ss_dssp EEEECCEEEECSSSC--EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEEC--SSSSEEEEEC-BSEEEEEETTST
T ss_pred cCCceeEEEECCCCC--EEEeecCCCcEeccccCCccccceeccCCCceEEEEEe--cCCcEEEEcC-CCeEEEEECCCC
Confidence 566899999999999 78777777777777666555555555799999999995 4678999998 999999999876
Q ss_pred Ccee---eec--CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce--eeEEEecccccccceEEEEEcCCCCE
Q 001367 520 GARV---DYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQ 592 (1091)
Q Consensus 520 ~~~~---~~~--~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~ 592 (1091)
.... .+. .+...+.+++|+|+++++++++. ++.|++||+.+++ ....+..+. ..+.+++|+|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~ 155 (337)
T 1gxr_A 83 GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----ASTLSIWDLAAPTPRIKAELTSSA---PACYALAISPDSKV 155 (337)
T ss_dssp TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----SSEEEEEECCCC--EEEEEEECSS---SCEEEEEECTTSSE
T ss_pred CceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCCcceeeecccCC---CceEEEEECCCCCE
Confidence 5433 222 67889999999999999999876 6679999999887 555666665 78999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeee
Q 001367 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1091)
+++++.||.|++||+.+++.+..+..+.. .+.+++|+|+++++++++.||.|++||+.+++....+
T Consensus 156 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------------ 221 (337)
T 1gxr_A 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTD--GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH------------ 221 (337)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE------------
T ss_pred EEEEeCCCcEEEEeCCCCceeeeeecccC--ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee------------
Confidence 99999999999999999999988876544 6899999999999999999999999998754221110
Q ss_pred ccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEee
Q 001367 673 NPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 752 (1091)
Q Consensus 673 ~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 752 (1091)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccC
Q 001367 753 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT 831 (1091)
Q Consensus 753 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~ 831 (1091)
.+...+.+++|+|+++++++++ ++.|++||+.+
T Consensus 222 ----------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 222 ----------------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp ----------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred ----------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 0233456666677777777666 56777777776
Q ss_pred ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEE
Q 001367 832 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 911 (1091)
Q Consensus 832 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~v 911 (1091)
++.. .+..|...|.+++|+| ++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++
T Consensus 256 ~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 332 (337)
T 1gxr_A 256 PDKY-QLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATV 332 (337)
T ss_dssp SCEE-EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCeE-EEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEE
Confidence 6543 4567889999999999 8999999999999999999998877544 48899999999999999999999999999
Q ss_pred EEc
Q 001367 912 WDV 914 (1091)
Q Consensus 912 wd~ 914 (1091)
|++
T Consensus 333 w~~ 335 (337)
T 1gxr_A 333 YEV 335 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 49
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-34 Score=328.80 Aligned_cols=292 Identities=17% Similarity=0.219 Sum_probs=247.4
Q ss_pred CCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccc------------------cCeeEEEEcCCCCc
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ 455 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~------------------~~v~~~~~s~d~~~ 455 (1091)
+|...|.+++|||||++||+|+ ++++++|++.+++.+. .+.+|. ..|.+++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6789999999887554 343332 2499999999999
Q ss_pred eEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEE
Q 001367 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 456 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1091)
+|++|+.|+.|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999999999999999999999999954 66799999999999999999887766655 44578999
Q ss_pred EEcC-CCCEEEEEecCCCCceEEEEEecCCceeeEEEecc----cccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001367 536 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1091)
Q Consensus 536 ~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1091)
+|+| +++++++++. ++.|++||+.++..+..+... ..|...|.+++|+|+++++++++.|+.|++||+.+.
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999 8999999986 566999999999887776321 123488999999999999999999999999999764
Q ss_pred e------------eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccc
Q 001367 611 Q------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1091)
Q Consensus 611 ~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1091)
. ....+..|. ..|.+++|+|++.+|++++.|+.|++||..++..+..+.+|...|.++++++....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGHK--DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp ------------CEEEEEECCS--SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred CCcccccCCCCCcceEEEeccc--CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence 2 334454443 36899999999999999999999999999999999999999999999999764322
Q ss_pred ccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 679 TGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 679 ~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|+++.+++++.|++|++|++.
T Consensus 367 ---------------~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 367 ---------------GPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp ---------------CTTCEEEEEEETTSEEEEEEEE
T ss_pred ---------------CCCCCEEEEECCCCcEEECccc
Confidence 6889999999999999999975
No 50
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-34 Score=355.68 Aligned_cols=299 Identities=18% Similarity=0.252 Sum_probs=253.2
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
....|.+|++.|++++|+|++..+|++|+.||+|+|||+.++..... .....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence 34578899999999999998756889999999999999987543211 0112377999999999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe---c
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---E 482 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~ 482 (1091)
|++++|++|+.|++|+|||+.++...+ .+.+|...|.+++|+|+++ +|++++.|++|++||.......... .
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999986554 6789999999999999999 7999999999999997654433222 4
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
+|...|.+++|++......+++++.|+.|++||+++......+..|...|.+++|+|++++|++++. ++.|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 6889999999987665578999999999999999999888899999999999999999999999986 667999999
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-----------------CCCC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPEN 625 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v 625 (1091)
.+++.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+
T Consensus 591 ~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
T 3dm0_A 591 AEGKKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665 (694)
T ss_dssp TTTEEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCE
T ss_pred CCCceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEe
Confidence 999988776543 4799999999988777665 56699999999998877754321 1135
Q ss_pred ceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 626 PRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
.+++|+|+|++|++|+.||.|++|++.
T Consensus 666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 666 TSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 789999999999999999999999975
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-36 Score=345.72 Aligned_cols=337 Identities=14% Similarity=0.188 Sum_probs=267.5
Q ss_pred cceEEEEEcCCCC-EEEEE----------eCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 579 NSVSVVHFDTAKD-QILAA----------GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 579 ~~v~~v~~~~~~~-~l~~~----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
..+.+++|+|+++ +++++ +.|+.|++||+.++.....+....+...|.+++|+|++++|++++.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 3678899999987 88888 899999999999876322211112334699999999999999999999999
Q ss_pred EEECCC----CCeecccccccccceeeeeccccccccccccCCcccCCCCCCC-CCcccccccccccccccccccCCccc
Q 001367 648 ILETPE----SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKED-VKPEISVEAENKSEVEKPLFARPSEC 722 (1091)
Q Consensus 648 iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~-~~~l~s~~~d~~i~~w~~~~~~~~~~ 722 (1091)
+|++.+ ......+.+|...|.+++| +|+ ++.+++++.|+.|++|++........
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~---------------------~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKF---------------------NAKQDNVLASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEE---------------------CSSSTTBEEEECSSSCEEBCBTTTTSSCTT
T ss_pred EeecccccccccchhhccCCccceEEEEE---------------------cCCCCCEEEEEcCCCeEEEEECCCCccccc
Confidence 999987 3577888899999999999 555 66677777777777777652210000
Q ss_pred ceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCC
Q 001367 723 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 802 (1091)
Q Consensus 723 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1091)
. ...+... ...+|..
T Consensus 152 ~-------------------------------------------------------~~~~~~~----------~~~~~~~ 166 (416)
T 2pm9_A 152 N-------------------------------------------------------YTPLTPG----------QSMSSVD 166 (416)
T ss_dssp T-------------------------------------------------------CCCBCCC----------CSCCSSC
T ss_pred c-------------------------------------------------------ccccccc----------cccCCCC
Confidence 0 0000000 0014788
Q ss_pred CeeEEEecCC-CCEEEEEe-CCeEEEEEccCceeEEEecCC------CCCeEEEEEcCCCCcEEEEEeCCC---eEEEEe
Q 001367 803 AVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGMDDS---TILIYN 871 (1091)
Q Consensus 803 ~v~~l~~s~d-g~~la~~~-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~~la~g~~dg---~i~iwd 871 (1091)
.|.+++|+|+ +.++++++ |+.|++||+.+++.+..+..+ ...+.+++|+|++..++++++.|+ .|++||
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d 246 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246 (416)
T ss_dssp CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence 9999999999 78888887 799999999999999888876 788999999994457999999999 999999
Q ss_pred ccCc-ceeeeec-cccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC-
Q 001367 872 ARSS-EVISKLE-GHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ- 947 (1091)
Q Consensus 872 ~~~~-~~~~~l~-~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg- 947 (1091)
+.++ +.+..+. +|...|++++|+| ++++|++++.|+.|++||+.+++ .+..+.+|.. .|.+++|+|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~-----~~~~~~~~~~---~v~~~~~s~~~~ 318 (416)
T 2pm9_A 247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE-----QLSQFPARGN---WCFKTKFAPEAP 318 (416)
T ss_dssp TTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC-----EEEEEECSSS---CCCCEEECTTCT
T ss_pred CCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc-----cceeecCCCC---ceEEEEECCCCC
Confidence 9986 6777888 8999999999999 99999999999999999999865 3444445554 79999999999
Q ss_pred CEEEE-EecCeEEEEEcCCcceeeeee----------------------------------cCCccCEEEEEEeeCCCEE
Q 001367 948 TRFLL-VHETHLAIYEAEELTCLKQWF----------------------------------PISSVPISQATFSCDCRMV 992 (1091)
Q Consensus 948 ~~la~-~~d~~i~vwd~~~~~~~~~~~----------------------------------~~h~~~v~~v~fs~dg~~l 992 (1091)
.+|++ +.|+.|++||+.++....... ..|..++.+++|+|||++|
T Consensus 319 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 398 (416)
T 2pm9_A 319 DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLV 398 (416)
T ss_dssp TEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEE
T ss_pred CEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEE
Confidence 78888 578999999998776433210 1156778899999999999
Q ss_pred EEEEcCCcEEEEeCCCC
Q 001367 993 FTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 993 ~t~~~dg~v~iwd~~~~ 1009 (1091)
++++.||.|+||++.+.
T Consensus 399 a~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 399 QITPDGKGVSITNPKIS 415 (416)
T ss_dssp CBCTTSSCBCCBCCCCC
T ss_pred EEeCCCCeEEEEEeccC
Confidence 99999999999999875
No 52
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.5e-34 Score=318.46 Aligned_cols=288 Identities=20% Similarity=0.223 Sum_probs=240.4
Q ss_pred eeecCCCccEEEEEE-----CC-CCCEEEEEECCCEEEEEEeeCCcc----cceeEEEeccccCeeEEEEcCCCCceEEE
Q 001367 390 ALVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVI 459 (1091)
Q Consensus 390 ~~~~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~~~l~ 459 (1091)
..+.+|...|++++| ++ |+++||+|+.|++|++||+.+++. ......+.+|...|.+++|+|++. +++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~ 92 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAI 92 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEE
Confidence 348899999999999 77 999999999999999999986542 123446789999999999999999 899
Q ss_pred EeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec---CCCCcEEEEE
Q 001367 460 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMA 536 (1091)
Q Consensus 460 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~ 536 (1091)
+++.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+... ...... .+...+.+++
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeee
Confidence 999999999999999999999999999999999955 6679999999999999999743 222222 5677899999
Q ss_pred EcCCC----------CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001367 537 YSANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606 (1091)
Q Consensus 537 ~s~d~----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd 606 (1091)
|+|++ .++++++. ++.|++|| ..++....+.+|. ..|.+++|+|++++|++|+.||.|++||
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred eccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99987 68888876 67799999 4566777788777 8999999999999999999999999999
Q ss_pred CC-CCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeec--ccc-----------cccccceeeee
Q 001367 607 MN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSV 672 (1091)
Q Consensus 607 ~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~v~~~~~ 672 (1091)
+. .......+... ..|.+++|+|++.+++++ .|+.|++|++.+..... .+. +|...+.+++|
T Consensus 242 ~~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (343)
T 2xzm_R 242 ILNLTYPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317 (343)
T ss_dssp SSCCSSCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred CCCCcccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence 94 44444444332 258999999999887765 56789999998765433 222 56677888888
Q ss_pred ccccccccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 673 NPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 673 ~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|+++.+++|+.||+|++|++.
T Consensus 318 ---------------------sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 318 ---------------------NALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp ---------------------CSSSCCEEEEETTSEEEEEEEE
T ss_pred ---------------------CCCCCeEEEecCCceEEEEEEE
Confidence 8889999999999999999976
No 53
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.9e-35 Score=338.44 Aligned_cols=332 Identities=13% Similarity=0.170 Sum_probs=266.6
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
.+++++|+|+|+ +|++|+.||.|++||+.+++.... +..| ..+....|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 456899999999 569999999999999988776542 3344 4555668899999999999
Q ss_pred CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecc
Q 001367 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1091)
.|+.|++||+.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+.+|...|.+++|++
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999876443 4578999999999999999 899999999999999999999999999999999999965
Q ss_pred cCCceEEEEEecCCeEEEEecCCCCceeeecCC---C---------------------CcEEEEEEcCCCCEEEEEecCC
Q 001367 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---G---------------------LGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~---------------------~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
++.+|++++.||.|++||+++.+....+..+ . ..+.+++|+|+++++++++.
T Consensus 192 --~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-- 267 (420)
T 3vl1_A 192 --RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-- 267 (420)
T ss_dssp --TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET--
T ss_pred --CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC--
Confidence 6679999999999999999988877776542 2 33444556889999999886
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCee-EEEEeCCCCCCCCceEE
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~ 629 (1091)
++.|++||+.+++....+.... ...|.+++|+|+++ ++++++.||.|++||+.+++. +..+..+.. ..+.++
T Consensus 268 --dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~- 341 (420)
T 3vl1_A 268 --SGVITVHNVFSKEQTIQLPSKF--TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG-TPINNV- 341 (420)
T ss_dssp --TSCEEEEETTTCCEEEEECCTT--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT-SCEEEE-
T ss_pred --CCeEEEEECCCCceeEEccccc--CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC-CCceEE-
Confidence 5669999999998877775422 47899999999998 999999999999999998754 666665332 356666
Q ss_pred EccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccc
Q 001367 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKS 709 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i 709 (1091)
+.+++++|++++.|+.|++|++............... .
T Consensus 342 ~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~-------------------------------~----------- 379 (420)
T 3vl1_A 342 YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETP-------------------------------T----------- 379 (420)
T ss_dssp EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSC-------------------------------E-----------
T ss_pred EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCc-------------------------------c-----------
Confidence 4557889999999999999998764222111100000 0
Q ss_pred ccccccccCCcccceeecCCccccccEEEEEEecCCC---eEEEeecCceEEEeecC
Q 001367 710 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ---AIFALASNGVHLMWRWP 763 (1091)
Q Consensus 710 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~---~l~~~~~dg~i~vw~~~ 763 (1091)
. ...+...|..++|+|++. .+++++.+|.+.+|++.
T Consensus 380 --------------~----~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 380 --------------F----LVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp --------------E----ECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred --------------E----EccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 0 012567888999999999 89999999999999864
No 54
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.7e-34 Score=327.55 Aligned_cols=302 Identities=12% Similarity=0.108 Sum_probs=256.7
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
.+.+++.+|.+.|++++|+| + +|++|+.||.|+|||+.+++...... ....+.+|...|.+++|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~ 70 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDV 70 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEE
Confidence 45678899999999999999 4 67999999999999999987211000 00116689999999999
Q ss_pred CCC----C---CEEEEEECCCEEEEEEeeCCcccc--eeEEEecc-----ccCeeEEEEc----CCCCceE-EEEeeCCC
Q 001367 405 SPD----G---SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAH-----VGNVNDLAFS----APCKQIS-VITCGDDK 465 (1091)
Q Consensus 405 spd----g---~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h-----~~~v~~~~~s----~d~~~~~-l~s~~~d~ 465 (1091)
+|+ + ++|++++.|+.|++||+.+++... ....+..| ...|.+++|+ |+++ + |++++.||
T Consensus 71 ~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg 148 (397)
T 1sq9_A 71 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKG 148 (397)
T ss_dssp EEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTS
T ss_pred ecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCC
Confidence 999 9 999999999999999999987510 02356778 5899999999 9999 8 99999999
Q ss_pred cEEEEeCCC------CceeE-----Ee-------cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC
Q 001367 466 TIKVWDAVT------GSRTY-----SF-------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527 (1091)
Q Consensus 466 ~i~iwd~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 527 (1091)
.|++||+.+ ++.+. .+ ..|...|.+++|++ ++ ++++++.||.|++||+++.+....+..
T Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 999999998 77776 77 44889999999955 66 999999999999999999888888887
Q ss_pred ---C---CCcEEEEEEcCCCCEEEEEecCCCCc---eEEEEEecCCceeeEEEec-------------ccccccceEEEE
Q 001367 528 ---P---GLGCTRMAYSANGRRLFSCGTSKEGE---SFLVEWNESEGAIKRTYQG-------------LQLQHNSVSVVH 585 (1091)
Q Consensus 528 ---~---~~~i~~~~~s~d~~~l~~~~~~~~~~---~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~~v~ 585 (1091)
+ ...+.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |. ..|.+++
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~ 298 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLS 298 (397)
T ss_dssp CC---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEEEEE
T ss_pred cccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccC---CcEEEEE
Confidence 7 889999999999999999876 5 7899999999999999887 66 8999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe------CC-------------CCCCCCceEEEccCC----------CE
Q 001367 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG----------TL 636 (1091)
Q Consensus 586 ~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~----------~~ 636 (1091)
|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccce
Confidence 99999999999999999999999999999998 44 003479999999998 79
Q ss_pred EEEEECCCeEEEEECCCC
Q 001367 637 LAVIANENRIKILETPES 654 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~ 654 (1091)
|++++.||.|++|++.++
T Consensus 379 l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 379 LCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEETTTEEEEEEEEC-
T ss_pred EEEecCCCcEEEEEcCCC
Confidence 999999999999998765
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.8e-34 Score=329.16 Aligned_cols=322 Identities=15% Similarity=0.197 Sum_probs=281.1
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
..+.+.+|.+.|.. +++++|+ ++++|+.||+|++||+.+++.+.. +.+|...|.+++|+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 168 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR 168 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE
T ss_pred eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec
Confidence 34678999987643 3556787 679999999999999999987765 77899999999998
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 485 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 485 (1091)
+++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+ ++ .+++++.||.|++||+.+++.+..+.+|.
T Consensus 169 --~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 239 (445)
T 2ovr_B 169 --DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHV 239 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred --CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence 6799999999999999999986554 678999999999996 45 79999999999999999999999999999
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
..|.++++ ++.++++++.||.|++||+++.+....+..+...+.++.| ++.++++++. ++.|++||+.++
T Consensus 240 ~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~ 309 (445)
T 2ovr_B 240 AAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG 309 (445)
T ss_dssp SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC
T ss_pred ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC
Confidence 99999988 5578999999999999999999888899999999999999 8899999986 566999999999
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC-CCCCCceEEEccCCCEEEEEECCC
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg 644 (1091)
+.+..+.+|. ..+.++.+ +++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||
T Consensus 310 ~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 382 (445)
T 2ovr_B 310 NCIHTLTGHQ---SLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG 382 (445)
T ss_dssp CEEEEECCCC---SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CEEEEEcCCc---ccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence 9999998877 78888777 46799999999999999999999999887632 34468888885 68999999999
Q ss_pred eEEEEECCCCCeeccc-----ccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccc----ccccccc
Q 001367 645 RIKILETPESNSVDAA-----GVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENK----SEVEKPL 715 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~----i~~w~~~ 715 (1091)
.|++||+.+++.+..+ ..+...|.+++| +|++..+++++.||+ +.+||+.
T Consensus 383 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------------s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA---------------------SNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE---------------------CSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred eEEEEECCCCceeeeeeccccCCCCceEEEEEe---------------------cCCEEEEEEcccCCCCccEEEEEECC
Confidence 9999999999888776 467788999998 777888889998887 8888876
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.9e-34 Score=325.37 Aligned_cols=299 Identities=15% Similarity=0.139 Sum_probs=247.5
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
....+.+.+|.+.|++++|+|++..+||+|+.||.|+|||+.+++...... ..+|...|.+++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~~ 125 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGMK 125 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEEE
Confidence 356778899999999999999993378999999999999999887664311 347999999999
Q ss_pred ECC-CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec
Q 001367 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 482 (1091)
|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++++.|+.|++||+ +++.+..+.
T Consensus 126 ~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~ 201 (383)
T 3ei3_B 126 FNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEK 201 (383)
T ss_dssp EETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred eCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEec
Confidence 999 789999999999999999986 33332222234558899999999999 8999999999999998 688899999
Q ss_pred CCCcceEEEeecccCCce-EEEEEecCCeEEEEecCC----CCceeeecCCCCcEEEEEEcC-CCCEEEEEecCCCCceE
Q 001367 483 GHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~ 556 (1091)
+|...|.+++|++ ++. ++++++.|+.|++||+++ ......+ .+...+.+++|+| ++++|++++. ++.
T Consensus 202 ~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~ 274 (383)
T 3ei3_B 202 LHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNE 274 (383)
T ss_dssp CSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSE
T ss_pred cCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCc
Confidence 9999999999965 455 899999999999999987 3333444 5788999999999 9999999976 677
Q ss_pred EEEEecCCceeeEEEeccccc--------------ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC
Q 001367 557 LVEWNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 622 (1091)
|++||+.+++....+.++... ...+..++|+|++++ +++.|+.|++||+.+++.+..+..+...
T Consensus 275 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~ 352 (383)
T 3ei3_B 275 IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAA 352 (383)
T ss_dssp EEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBC
T ss_pred EEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCC
Confidence 999999998887777654311 123445666777666 7779999999999999999999876544
Q ss_pred CCCceEEEccCCCEEEEEECCCeEEEEECCC
Q 001367 623 PENPRICFNKNGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
..+..++|+|++++|++++ |+.|++|++.+
T Consensus 353 ~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 353 GIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 5677789999999999997 89999999874
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.8e-34 Score=330.16 Aligned_cols=304 Identities=17% Similarity=0.233 Sum_probs=265.4
Q ss_pred heeeecccCCCCc-EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 325 TVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 325 ~~~~~l~~h~~~V-~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
....++.+|.+.| .+++| +++ ++++|+.||+|++||+.+++.+.. +.+|...|.+++
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~ 169 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALK 169 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEE
Confidence 4567889999886 56665 555 679999999999999999987765 778999999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC--CCCceEEEEeeCCCcEEEEeCCCCce----
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR---- 477 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~---- 477 (1091)
|+|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ +++ ++++++.|+.|++||+.++..
T Consensus 170 ~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 170 YAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp ECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC---
T ss_pred EcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccc
Confidence 99988 99999999999999999986544 6789999999999984 556 899999999999999987753
Q ss_pred -------------------eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEc
Q 001367 478 -------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS 538 (1091)
Q Consensus 478 -------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 538 (1091)
+..+.+|...|.++.. ++.++++++.||.|++||+.+.+....+..+...+.+++|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 319 (464)
T 3v7d_B 244 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD 319 (464)
T ss_dssp ---CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred cccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEc
Confidence 4567889999988843 55799999999999999999999999999999999999999
Q ss_pred CCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 539 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
|+++++++++. ++.|++||+.+++.+..+.+|. ..|.+++|+ ++++++++.||.|++||+.++........
T Consensus 320 ~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 390 (464)
T 3v7d_B 320 HERKRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH 390 (464)
T ss_dssp TTTTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC
Confidence 99999999986 5669999999999999999887 899999997 58999999999999999999887766643
Q ss_pred CCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecc-cccccccceeeeec
Q 001367 619 GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN 673 (1091)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~ 673 (1091)
. ..+..++|+++++++++++ ||.|++||+.+++.+.. ...+...|.+++|+
T Consensus 391 ~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 391 T---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp T---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred C---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 2 2467889999999999998 89999999999988875 67788889999884
No 58
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=317.08 Aligned_cols=292 Identities=12% Similarity=0.109 Sum_probs=258.5
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
....|.+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 83 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVD 83 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEc
Confidence 3456899999999999999998 679999999999999999987765 77899999999999
Q ss_pred CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC-----CcEEEEeCCCCc----
Q 001367 406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS---- 476 (1091)
Q Consensus 406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~---- 476 (1091)
|++++|++++.|+.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 84 CFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcccee
Confidence 999999999999999999999987655 344 888999999999999 78899888 999999988664
Q ss_pred -------eeEEecCCCc--ceEEEeecccCCceEEEEEecCCeEEEEecCC-CCceeeecCCCCcEEEEEEcCCCCEEEE
Q 001367 477 -------RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFS 546 (1091)
Q Consensus 477 -------~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 546 (1091)
.+..+..|.. .+.+++|++ ++.++++++.||.|++||+.+ ......+..+...+.+++|+|++++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 158 LTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp EEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence 3445556666 899999965 667999999999999999998 5667788888999999999999999999
Q ss_pred EecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCC--------------eEEEEECCCCee
Q 001367 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQL 612 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg--------------~i~iwd~~~~~~ 612 (1091)
++. ++.|++||+.+++.+..+.. . ..+.+++|+|+++++++++.++ .+++||..+++.
T Consensus 236 ~~~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 236 SSR----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp EET----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred ecC----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 976 66799999999999888873 3 6899999999999999999888 899999999999
Q ss_pred EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCC
Q 001367 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
+..+..+.. .|.+++|+|++++|++++.||.|++|++..+.
T Consensus 308 ~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 308 IGRVQGHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEECCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred hhheecccC--cEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 999887654 79999999999999999999999999998653
No 59
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.8e-33 Score=313.19 Aligned_cols=298 Identities=15% Similarity=0.229 Sum_probs=233.9
Q ss_pred cCCceeeEEEecccccccceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe-----eEEEEeCCCCCCCCceEEEccCCC
Q 001367 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFNKNGT 635 (1091)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1091)
.++.++..++++|. +.|++++|+|+ +++|++|+.|++|++||+.+.+ +...+..|. ..|.+++|+|+++
T Consensus 25 ~~~~~l~~tL~GH~---~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~--~~V~~~~~s~dg~ 99 (340)
T 4aow_A 25 TEQMTLRGTLKGHN---GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS--HFVSDVVISSDGQ 99 (340)
T ss_dssp -CEEEEEEEECCCS---SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS--SCEEEEEECTTSS
T ss_pred CCceEEEEEECCcc---CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC--CCEEEEEECCCCC
Confidence 34445667788888 99999999998 5799999999999999987643 345555554 4799999999999
Q ss_pred EEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 636 LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|++++.|+.|++|+...........
T Consensus 100 ~l~s~~~d~~i~~~~~~~~~~~~~~~------------------------------------------------------ 125 (340)
T 4aow_A 100 FALSGSWDGTLRLWDLTTGTTTRRFV------------------------------------------------------ 125 (340)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE------------------------------------------------------
T ss_pred EEEEEcccccceEEeecccceeeeec------------------------------------------------------
Confidence 99999999999999876542221110
Q ss_pred ccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecC
Q 001367 716 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 795 (1091)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1091)
T Consensus 126 -------------------------------------------------------------------------------- 125 (340)
T 4aow_A 126 -------------------------------------------------------------------------------- 125 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCcee-EEEecCCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEec
Q 001367 796 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHD-NNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 796 ~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~-~~~la~g~~dg~i~iwd~ 872 (1091)
.+...+....+++++.++++++ |+.+++||...... .....+|...+..++|+++. ..++++++.|+.|++||+
T Consensus 126 ---~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~ 202 (340)
T 4aow_A 126 ---GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202 (340)
T ss_dssp ---CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred ---CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEEC
Confidence 0222334444555555555555 56666666554433 33455688899999998842 357889999999999999
Q ss_pred cCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 873 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 873 ~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
.+++.+..+.+|.+.|++++|+|++++|++++.|+.|++||+.+.+. +.....+. .+.+++|+|++.++++
T Consensus 203 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~-----~~~~~~~~----~v~~~~~~~~~~~~~~ 273 (340)
T 4aow_A 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH-----LYTLDGGD----IINALCFSPNRYWLCA 273 (340)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-----EEEEECSS----CEEEEEECSSSSEEEE
T ss_pred CCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce-----eeeecCCc----eEEeeecCCCCceeec
Confidence 99999999999999999999999999999999999999999998653 33333333 5899999999999988
Q ss_pred EecCeEEEEEcCCcceeeeee--------cCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCc
Q 001367 953 VHETHLAIYEAEELTCLKQWF--------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 953 ~~d~~i~vwd~~~~~~~~~~~--------~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
+.|+.|++||++++..+..+. .+|...|++++|+|||++|++|+.||.|+|||+.+|.
T Consensus 274 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999999887665432 3578999999999999999999999999999999985
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-35 Score=344.88 Aligned_cols=342 Identities=10% Similarity=0.059 Sum_probs=248.8
Q ss_pred eeeecccCCCCcEEEEEcCCC---------ceEEEE-------------------EcCCCcEEEEEcCCCCceeeeceeE
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNFKV 377 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg---------~~llas-------------------g~~dg~i~iWd~~~~~~~~~~~~~~ 377 (1091)
+..++. +.+.|++|+|+|++ + +||+ |+.|++|+|||+.+++.....
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~---- 199 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK---- 199 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE----
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE----
Confidence 333444 45688888888886 4 4455 557889999999887643210
Q ss_pred EeccccccceeeeeecCCCccEEEEEECCC------CCEEEEEECCCEEEEEEeeCCccc--------ceeEEEeccccC
Q 001367 378 WDIGACSMLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHVGN 443 (1091)
Q Consensus 378 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------g~~las~~~d~~i~iwd~~~~~~~--------~~~~~~~~h~~~ 443 (1091)
...+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.++... .....+.+|...
T Consensus 200 -----------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~ 268 (524)
T 2j04_B 200 -----------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL 268 (524)
T ss_dssp -----------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred -----------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence 1125568899999999997 579999999999999999876432 123367899999
Q ss_pred eeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc-eeEEecCCCcceEEEeecccCCc-eEEEEEecCCeEEEEecCCCCc
Q 001367 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGA 521 (1091)
Q Consensus 444 v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~ 521 (1091)
|++++|++++ .|++|+.||+|++||+.++. +...+.+|...|.++++...+++ .+|++++.|++|++||+++.+.
T Consensus 269 v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 269 ITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp EEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred EEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 9999999864 69999999999999999874 45678899999999954335566 7999999999999999988766
Q ss_pred eeeecCCC--CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC
Q 001367 522 RVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 599 (1091)
Q Consensus 522 ~~~~~~~~--~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d 599 (1091)
...+..+. ..+.+++|+|+++.+++++. ++.|++||++++..+..+.+|. ..|.+++|+|++++|++|+.|
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEETT
T ss_pred ccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEECC
Confidence 55554433 34788999999999988865 6679999999998888888877 899999999999999999999
Q ss_pred CeEEEEECCCCeeEEEEeCC---CCCCCCceEEEccCCCEEEEEECCCeEEEEECC-CCCeecccccccccceeeeeccc
Q 001367 600 HVIKIWDMNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
|+|++||+..+ .+...... .....+..++|+|+++.+. ... .+.+|... ++..+..+.+|...|.+++|+|+
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~ 494 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNET 494 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCS
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCC
Confidence 99999998654 22111100 0111356889999998553 222 23344332 45677788899999999999543
Q ss_pred cccccccccCCcccCCCCCCCCCcccccccccccccccccc
Q 001367 676 STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 676 ~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~ 716 (1091)
+ +.+..+++|+.+|.|+||++..
T Consensus 495 ~------------------~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 495 S------------------AGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp T------------------TTTTEEEEECTTSEEEEEECSC
T ss_pred C------------------CccHHHHhhccCceEEEEEccc
Confidence 1 2255899999999999999763
No 61
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=309.67 Aligned_cols=294 Identities=20% Similarity=0.266 Sum_probs=255.6
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.+..+++.+|.+.|++++| |+++ ++++|+.||.|++||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 4677889999999999999 9998 579999999999999988876653 557899999999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1091)
|+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999876554555578899999999999 466 799999999999999 7788888999
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC-CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
|...+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+
T Consensus 141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence 9999999999763 456999999999999999 3445555555 788999999999998 777765 667999999
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
.+++.+..+.+|. ..|.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .+.+++|+|+++ +++++.
T Consensus 213 ~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~ 285 (313)
T 3odt_A 213 HTGDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSS 285 (313)
T ss_dssp TTCCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEET
T ss_pred CchhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeC
Confidence 9999999998877 899999999998 689999999999999999999999987754 689999999998 667999
Q ss_pred CCeEEEEECCCCCeecc
Q 001367 643 ENRIKILETPESNSVDA 659 (1091)
Q Consensus 643 dg~i~iwd~~~~~~~~~ 659 (1091)
||.|++|++.+++....
T Consensus 286 dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 286 DNLVRIFSQEKSRWASE 302 (313)
T ss_dssp TSCEEEEESCGGGCCC-
T ss_pred CCcEEEEeCCCCceeeh
Confidence 99999999987755443
No 62
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.1e-34 Score=320.05 Aligned_cols=300 Identities=12% Similarity=0.209 Sum_probs=248.9
Q ss_pred chheeeecccCCCCcEEEEEcCCCceEEEEEcC---CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccE
Q 001367 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1091)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~fspdg~~llasg~~---dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1091)
|.-..+.+.+|.+.|++++|+|+++.++++|+. ||.|+|||+.+++..... ..+|...|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v 68 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPI 68 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcE
Confidence 344556678999999999999999878889987 999999999998765431 22589999
Q ss_pred EEEEECCC---CCEEEEEECCCEEEEEEeeCCc-ccceeEEEeccccCeeEEE------EcCCCCceEEEEeeCCCcEEE
Q 001367 400 NRVVWSPD---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKV 469 (1091)
Q Consensus 400 ~~l~~spd---g~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~------~s~d~~~~~l~s~~~d~~i~i 469 (1091)
.+++|+|+ +++|++|+.|+.|++||+.+++ .+. .+.+|...|.+++ |+|+++ +|++++.|+.|++
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~v 143 (357)
T 3i2n_A 69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKV 143 (357)
T ss_dssp EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEE
T ss_pred EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEE
Confidence 99999998 7999999999999999999886 333 6789999999995 578898 8999999999999
Q ss_pred EeCCCCc-eeEEecCCCc----ceEEEeec--ccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcC---
Q 001367 470 WDAVTGS-RTYSFEGHGA----PVYSLCPH--AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--- 539 (1091)
Q Consensus 470 wd~~~~~-~~~~~~~~~~----~v~~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--- 539 (1091)
||+.+++ .+..+..|.+ .+.++++. .++++.++++++.||.|++||+++...... ..+...+.+++|+|
T Consensus 144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSS
T ss_pred EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCC
Confidence 9999987 7788876655 78888742 245778999999999999999998776443 55677899999999
Q ss_pred CCCEEEEEecCCCCceEEEEEecCCceeeEEEe-----cccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---
Q 001367 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV--- 610 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~--- 610 (1091)
++.++++++. ++.|++||+.+++....+. +|. ..|.+++|+|+++ ++++++.||.|++||+.++
T Consensus 223 ~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 223 SMNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp SCCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 9999999876 6679999999887666554 555 8999999999998 7999999999999998754
Q ss_pred ----------------eeEEEEeCCCCCCCCceEEEccCCCEEE-EEECCCeEEEEECCCCC
Q 001367 611 ----------------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN 655 (1091)
Q Consensus 611 ----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~ 655 (1091)
+.+..+..+. ..|.+++|+|++++|+ +++.||.|++|++.+..
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 296 SKKDSEGIEMGVAGSVSLLQNVTLST--QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp --CCTTSCCCCCCCEEEEEEEEECCS--SCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccCCCCccccccccceeeccccCC--CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 3455566554 4799999999999998 79999999999988653
No 63
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.4e-32 Score=318.11 Aligned_cols=317 Identities=21% Similarity=0.309 Sum_probs=269.1
Q ss_pred EEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEe
Q 001367 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515 (1091)
Q Consensus 436 ~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 515 (1091)
.+.+|.+.|.. +++++|+ ++++|+.||.|++||+.+++.+..+.+|...|.+++++ +.++++++.||.|++||
T Consensus 113 ~l~~h~~~v~~-~~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEEEE
T ss_pred EecccCCCcEE-EEEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEEEE
Confidence 57789887533 3455677 89999999999999999999999999999999999985 35899999999999999
Q ss_pred cCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE
Q 001367 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1091)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 595 (1091)
+.+++....+..|...|.++.++ ++.+++++. ++.|++||+.+++.+..+.+|. ..+.+++| +++++++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~ 254 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHV---AAVRCVQY--DGRRVVS 254 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCS---SCEEEEEE--CSSCEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCc---ccEEEEEE--CCCEEEE
Confidence 99999888999999999999985 567888876 6779999999999999998877 89999998 6789999
Q ss_pred EeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccc
Q 001367 596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
++.||.|++||+.+++.+..+..+.. .+.++.| ++.++++++.||.|++||+.+++.+..+.+
T Consensus 255 ~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------------- 317 (445)
T 2ovr_B 255 GAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG------------- 317 (445)
T ss_dssp EETTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC-------------
T ss_pred EcCCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC-------------
Confidence 99999999999999999998876644 6888888 789999999999999999876543322211
Q ss_pred cccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCc
Q 001367 676 STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 755 (1091)
Q Consensus 676 ~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg 755 (1091)
T Consensus 318 -------------------------------------------------------------------------------- 317 (445)
T 2ovr_B 318 -------------------------------------------------------------------------------- 317 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCcee
Q 001367 756 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT 834 (1091)
Q Consensus 756 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~ 834 (1091)
|...+.++++ +++++++++ ||.|++||+.+++.
T Consensus 318 --------------------------------------------~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~ 351 (445)
T 2ovr_B 318 --------------------------------------------HQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQC 351 (445)
T ss_dssp --------------------------------------------CCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE
T ss_pred --------------------------------------------CcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcE
Confidence 2333444443 345667666 67888888888888
Q ss_pred EEEecC---CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee-----ccccCCeEEEEECCCCCEEEEEeCC
Q 001367 835 ILTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-----EGHSKRVTGLVFSDALNILVSSGGD 906 (1091)
Q Consensus 835 ~~~~~~---~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l-----~~h~~~V~~l~~spdg~~las~s~D 906 (1091)
+..+.. |...|++++|++ ++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++.+||+++.|
T Consensus 352 ~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~d 428 (445)
T 2ovr_B 352 LQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428 (445)
T ss_dssp EEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred EEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccC
Confidence 888775 778899999964 69999999999999999999988877 5788999999999999999999999
Q ss_pred Cc----EEEEEcCC
Q 001367 907 AQ----IFVWDVDG 916 (1091)
Q Consensus 907 g~----i~vwd~~~ 916 (1091)
|+ |.+||++.
T Consensus 429 g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 429 GTEETKLLVLDFDV 442 (445)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCccEEEEEECCC
Confidence 98 99999986
No 64
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=336.19 Aligned_cols=350 Identities=10% Similarity=0.032 Sum_probs=245.1
Q ss_pred CCccEEEEEECCCC---------CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC
Q 001367 395 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465 (1091)
Q Consensus 395 h~~~V~~l~~spdg---------~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~ 465 (1091)
+.+.|.+|+|+|++ ++||+|+.++. + -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C------------------Cccchhhh--hhccCCCCc
Confidence 56899999999987 89999986642 0 01368888 799999999
Q ss_pred cEEEEeCCCCcee----EEecCCCcceEEEeeccc----CCceEEEEEecCCeEEEEecCCCCc-----------eeeec
Q 001367 466 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD 526 (1091)
Q Consensus 466 ~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~ 526 (1091)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887653 446678899999999886 3467999999999999999976542 23567
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce-eeEEEecccccccceEEE--EEcCCC-CEEEEEeCCCeE
Q 001367 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI 602 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~v--~~~~~~-~~l~~~s~dg~i 602 (1091)
.+...|.+++|++++ .|++++. ++.|++||+.++. +...+.+|. ..|.++ +|+|++ .+|++++.|++|
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 788899999999865 7888876 7789999999764 445677777 899999 578887 889999999999
Q ss_pred EEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccccccc
Q 001367 603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 682 (1091)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (1091)
++||+++++.+..+..+.....|.+++|+|+++.+++++.|++|++||+.++..+..+.+|...|++++|
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~---------- 405 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGV---------- 405 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEEC----------
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEe----------
Confidence 9999998877666654433224789999999999999999999999999999888888899999999988
Q ss_pred ccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeec
Q 001367 683 IANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 762 (1091)
Q Consensus 683 ~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~ 762 (1091)
+|+++.+++|+.|++|++|+.... . +. . +... . ..
T Consensus 406 -----------Sp~g~~l~Sgs~Dgtv~lwd~~~~----~--~~--~--~~~~---------~------~~--------- 440 (524)
T 2j04_B 406 -----------SRLHPMVLAGSADGSLIITNAARR----L--LH--G--IKNS---------S------AT--------- 440 (524)
T ss_dssp -----------CSSCCBCEEEETTTEEECCBSCSS----T--TT--C--C------------------------------
T ss_pred -----------CCCCCeEEEEECCCEEEEEechHh----h--cc--c--cccC---------c------cc---------
Confidence 677777888888888888875311 0 00 0 0000 0 00
Q ss_pred CCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEcc-CceeEEEecCC
Q 001367 763 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMPP 841 (1091)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~-~~~~~~~~~~~ 841 (1091)
.+...+.+++|+|+++.+.. ++.+.+|+.. ++.++.++.+|
T Consensus 441 ------------------------------------~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~gh 482 (524)
T 2j04_B 441 ------------------------------------QKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDAH 482 (524)
T ss_dssp ------------------------------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------C
T ss_pred ------------------------------------eeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecCC
Confidence 01123445667777764422 2222333332 46677788899
Q ss_pred CCCeEEEEEcCCC---CcEEEEEeCCCeEEEEeccC
Q 001367 842 SPTATSLAFNPHD---NNVIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 842 ~~~i~~l~~s~~~---~~~la~g~~dg~i~iwd~~~ 874 (1091)
...|.+++|+| + +.++|+|+.||.|+||++..
T Consensus 483 ~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 483 GINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 99999999999 6 45999999999999999873
No 65
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-32 Score=320.73 Aligned_cols=347 Identities=16% Similarity=0.213 Sum_probs=262.8
Q ss_pred eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeE
Q 001367 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1091)
....+.+|. ...+.++.+ +++++++|+.||+|++||+.+++.+..+..|.. .|.+++|+|++ ++++++.||+|
T Consensus 113 ~~~~l~~h~--~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~--~V~~l~~~~~~-~l~s~s~dg~i 185 (464)
T 3v7d_B 113 QRTTLRGHM--TSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDG--GVWALKYAHGG-ILVSGSTDRTV 185 (464)
T ss_dssp EEEEEECCS--SSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECSTT-EEEEEETTSCE
T ss_pred ceEEEcCCC--CCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCc--CEEEEEEcCCC-EEEEEeCCCCE
Confidence 455677776 233566666 567999999999999999999999999986654 79999999988 99999999999
Q ss_pred EEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceee
Q 001367 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 726 (1091)
Q Consensus 647 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 726 (1091)
++||+.+++.+..+.+|...|.++++.+ .++++.+++++.|+++++|++.......
T Consensus 186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~-------------------~~~~~~l~s~s~d~~i~vwd~~~~~~~~----- 241 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVE-------------------YKNIKYIVTGSRDNTLHVWKLPKESSVP----- 241 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEE-------------------SSSCEEEEEEETTSCEEEEECCCCCCC------
T ss_pred EEEECCCCcEEEEECCCCCccEEEEEec-------------------CCCCCEEEEEcCCCcEEEeeCCCCcccc-----
Confidence 9999999888777777777776666642 2445555556666666666544211100
Q ss_pred cCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeE
Q 001367 727 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 806 (1091)
Q Consensus 727 ~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 806 (1091)
......+.. .+.. .+.... .....+ .+|...+.+
T Consensus 242 -----------~~~~~~~~~-~~~~-------------------------------~~~~~~-~~~~~~--~~~~~~v~~ 275 (464)
T 3v7d_B 242 -----------DHGEEHDYP-LVFH-------------------------------TPEENP-YFVGVL--RGHMASVRT 275 (464)
T ss_dssp ----------------CCSS-EEES-------------------------------CGGGCT-TEEEEE--CCCSSCEEE
T ss_pred -----------cccccCCcc-eEee-------------------------------ccCCCe-EEEEEc--cCccceEEE
Confidence 000000000 0000 000000 011111 146777776
Q ss_pred EEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeecccc
Q 001367 807 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 885 (1091)
Q Consensus 807 l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~ 885 (1091)
+ +++++++++++ |+.|++||+.+++.+..+.+|...|.+++|+| +++++++|+.||.|++||+.+++++..+.+|.
T Consensus 276 ~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~ 352 (464)
T 3v7d_B 276 V--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHT 352 (464)
T ss_dssp E--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred E--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC
Confidence 6 68899999998 79999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCC
Q 001367 886 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 965 (1091)
Q Consensus 886 ~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~ 965 (1091)
..|.+++|+ +++|++++.||.|++||+.++.... ... +. ..+..++|++++++|+++.|+.|++||+.+
T Consensus 353 ~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~----~~~--~~---~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 353 ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF----SYH--HT---NLSAITTFYVSDNILVSGSENQFNIYNLRS 421 (464)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE----EEE--CT---TCCCEEEEEECSSEEEEEETTEEEEEETTT
T ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee----eec--CC---CCccEEEEEeCCCEEEEecCCeEEEEECCC
Confidence 999999997 5899999999999999999865321 111 11 257789999999999998899999999999
Q ss_pred cceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 966 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 966 ~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
++.+.....+|...|.+++|+ ++.++++++.||.+.+|-
T Consensus 422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 999988778889999999997 445556666677665553
No 66
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=325.27 Aligned_cols=238 Identities=11% Similarity=0.177 Sum_probs=192.4
Q ss_pred chheeeec-ccCCCCcEEEEEcC-CCceEEEEEcCCCcEEEEEcCC---CCceeeeceeEEeccccccceeeeeecCCCc
Q 001367 323 PKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1091)
Q Consensus 323 p~~~~~~l-~~h~~~V~~v~fsp-dg~~llasg~~dg~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1091)
...++.++ .+|.+.|++++|+| +++ +||+|+.||+|+|||+.+ +..... ....+|..
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~~ 112 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCSS 112 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECSS
T ss_pred cceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCCC
Confidence 35667777 89999999999999 998 679999999999999977 432210 00224999
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEee---CCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~---~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
.|.+++|+|++++|++|+.|++|++||+. +++... .+.+| .+..+.|+|++
T Consensus 113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~--------------------- 166 (437)
T 3gre_A 113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG--------------------- 166 (437)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS---------------------
T ss_pred CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc---------------------
Confidence 99999999999999999999999999995 544332 34444 57777777643
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC--CCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
+...+.++.+...+++.++++++.||.|++||+++.+....+.. +...|.+++|+|++++|++++.
T Consensus 167 ---------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--- 234 (437)
T 3gre_A 167 ---------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT--- 234 (437)
T ss_dssp ---------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET---
T ss_pred ---------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC---
Confidence 22334444444566788999999999999999999988888877 7789999999999999999986
Q ss_pred CceEEEEEecCCceeeEEEe-cccccccceEEEEEc----CCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001367 553 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD----TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~v~~~----~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1091)
++.|++||+++++.+..+. .+. ..|.+++|+ |++.++++++.||.|++||+.+++.+..+..+.
T Consensus 235 -dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 303 (437)
T 3gre_A 235 -RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSD 303 (437)
T ss_dssp -TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSS
T ss_pred -CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCC
Confidence 5679999999999988886 444 689999665 457799999999999999999999998887654
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1e-33 Score=318.77 Aligned_cols=295 Identities=16% Similarity=0.215 Sum_probs=246.2
Q ss_pred eecccCCCCcEEEEEcCC---CceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 328 QTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspd---g~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..+.+|.++|++++|+|+ +..++++++.++.|+|||+.+++.+... +......|...|.+++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~ 77 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL--------------QSYVDADADENFYTCAW 77 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEE--------------EEEECSCTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEee--------------eeccccCCCCcEEEEEe
Confidence 455699999999999984 4435566666679999999988776431 11112347889999999
Q ss_pred CCC----CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC-CCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 405 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 405 spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
+|+ +++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+| +++ +|++++.||.|++||+.+++.+.
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVA 152 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEE
Confidence 999 6799999999999999999886554 6779999999999999 788 89999999999999999999998
Q ss_pred Ee---cCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec----------------------------CC
Q 001367 480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD----------------------------AP 528 (1091)
Q Consensus 480 ~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------------~~ 528 (1091)
.+ .+|...|.+++|++ ++.+|++++.||.|++||+++.+....+. .+
T Consensus 153 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp EECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred EecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 88 78999999999965 66799999999999999998765433222 37
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee--------------eEEEecccccccceEEEEEcCC--CCE
Q 001367 529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQ 592 (1091)
Q Consensus 529 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~v~~~~~--~~~ 592 (1091)
...|.+++|+ ++++++++. ++.|++||+.++.. +..+..|. ..|.+++|+|+ +++
T Consensus 231 ~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 231 RNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKM 301 (366)
T ss_dssp SSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSE
T ss_pred cceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcE
Confidence 7889999998 778888875 67799999987643 66666666 78999999999 999
Q ss_pred EEEEeCCCeEEEEECCCCe----eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 593 ILAAGDDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
|++++.||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999875 34466666445679999999999999999999999999975
No 68
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.5e-34 Score=328.92 Aligned_cols=304 Identities=17% Similarity=0.194 Sum_probs=238.7
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
...+...+|...|+||+|+|.+..+||+|+.||+|+|||+.+++...... +.+|.+.|++|+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----------------~~gH~~~V~~l~f 172 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----------------GIGAGGSITGLKF 172 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----------------CCSSSCCCCEEEE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----------------ccCCCCCEEEEEE
Confidence 34556778999999999999654588999999999999998887543211 5689999999999
Q ss_pred CC-CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC
Q 001367 405 SP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1091)
Q Consensus 405 sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1091)
+| ++.+|++|+.|++|++||++++.. ........+...+.+++|+|+++ +|++|+.||.|++||+. ++.+..+.+
T Consensus 173 ~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~ 248 (435)
T 4e54_B 173 NPLNTNQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRM 248 (435)
T ss_dssp CSSCTTEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBC
T ss_pred eCCCCCEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEec
Confidence 98 789999999999999999987532 22111223445688999999999 89999999999999975 567788999
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee---eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEE
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 560 (1091)
|...|.+++|++.. ..++++++.|+.|++||++...... ....|...|.+++|+|+|++|++++. ++.|++|
T Consensus 249 h~~~v~~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iw 323 (435)
T 4e54_B 249 HKKKVTHVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVY 323 (435)
T ss_dssp CSSCEEEEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEE
T ss_pred ccceEEeeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEE
Confidence 99999999997653 2488999999999999998766543 33567889999999999999999986 6679999
Q ss_pred ecCCceeeEEEeccccc---ccceEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeEEEEeCCCCCCCC
Q 001367 561 NESEGAIKRTYQGLQLQ---HNSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1091)
Q Consensus 561 d~~~~~~~~~~~~~~~~---~~~v~~v~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1091)
|+.++.....+..|... ...+..+.|+|++..+++++ .++.|++||..+++.+..+..+.. ..|
T Consensus 324 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~-~~v 402 (435)
T 4e54_B 324 SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPES-SGI 402 (435)
T ss_dssp ESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSC-CCC
T ss_pred ECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCC-CcE
Confidence 99999887777665411 11233456777777766654 346799999999999888754332 357
Q ss_pred ceE-EEccCCCEEEEEECCCeEEEEECCCCCe
Q 001367 626 PRI-CFNKNGTLLAVIANENRIKILETPESNS 656 (1091)
Q Consensus 626 ~~v-~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1091)
.++ +|+|+|++|++|+ |+.|+||++.+++.
T Consensus 403 ~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 403 SSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 776 6999999999876 78999999987754
No 69
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.8e-33 Score=314.44 Aligned_cols=203 Identities=12% Similarity=0.116 Sum_probs=172.9
Q ss_pred CCCCeeEEEecCCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc
Q 001367 800 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 876 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~ 876 (1091)
+...+.+++|||||+++++++ |++|+|||+.+++++..+. |...|.+++|+| ++++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556789999999999988765 6899999999999998886 778899999999 89999999855 56677777776
Q ss_pred ee--eeeccccCCeEEEEECCCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEE
Q 001367 877 VI--SKLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 950 (1091)
Q Consensus 877 ~~--~~l~~h~~~V~~l~~spdg~~las~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~l 950 (1091)
.+ ....+|...|.+++|+||++++++++.|+ .+++|++....... .......+|.. .|.+++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~---~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSV-LRSKQVTNRFK---GITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEE-EEEEEEESSCS---CEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecc-eeeeeecCCCC---CeEeEEECCCCCce
Confidence 54 34567889999999999999999999887 68899988755332 12233445544 79999999999999
Q ss_pred EE-EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 951 LL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 951 a~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
|+ +.|++|+|||+.+++++..+..+|...|++++|||||++||+++.|++|+||+++..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 578999999999999999888899999999999999999999999999999999754
No 70
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.7e-33 Score=312.00 Aligned_cols=291 Identities=12% Similarity=0.066 Sum_probs=245.9
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCC--ceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+..|.++|++++|+|+|+ ++|+|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD 63 (372)
T ss_dssp EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence 456889999999999998 67999999999999999886 3332 6689999999999999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce---e-EEecC
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---T-YSFEG 483 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~-~~~~~ 483 (1091)
+++|++++.|+.|++||+.+++... ...+.+|...|.+++|+|+++ ++++++.|+.|++||+.++.. . .....
T Consensus 64 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 64 SNRIVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp TTEEEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence 9999999999999999999876433 224567999999999999999 899999999999999998763 2 33367
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecC------------------CCCceeeecCCCCcEEEEEEcCCCCEEE
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
|...|.+++|++ ++.++++++.||.|++||+. .......+..+...+.+++|+|++++|+
T Consensus 141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 899999999965 66799999999999999954 4566667778888999999999999999
Q ss_pred EEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeeE----------
Q 001367 546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL---------- 613 (1091)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~---------- 613 (1091)
+++. ++.|++||+.+++.+..+..+. ..|.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9986 6679999999999999998877 899999999999877777 999999999987 5311
Q ss_pred ----------------------------EEEeCCCCCCCCceEEEc-cCC---CEEEEEECCCeEEEEECCCC
Q 001367 614 ----------------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES 654 (1091)
Q Consensus 614 ----------------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iwd~~~~ 654 (1091)
..+. .++...|.+++|. ++| ++|++++.||.|++|++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred chhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1111 1344578999866 566 99999999999999998754
No 71
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-32 Score=307.11 Aligned_cols=289 Identities=12% Similarity=0.144 Sum_probs=258.9
Q ss_pred eeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEE
Q 001367 389 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 389 ~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1091)
...+.+|...|++++|+|++++||+++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~ 99 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIK 99 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEE
Confidence 34488999999999999999999999999999999999886554 6789999999999999999 899999999999
Q ss_pred EEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC-----CeEEEEecCCCCc-----------eeeecCCCC--
Q 001367 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL-- 530 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~-----------~~~~~~~~~-- 530 (1091)
+||+.+++.+..+. +...|.+++|++ ++.++++++.+ |.|++||+..... ...+..+..
T Consensus 100 iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD 176 (369)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred EEECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence 99999999999887 889999999954 67899999998 9999999987643 223334444
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC-ceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001367 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
.+.+++|+|+++++++++. ++.|++||+.+ ++.+..+..+. ..|.+++|+|++++|++++.|+.|++||+.+
T Consensus 177 ~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp CEEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ceeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence 8999999999999999876 67799999998 78888888877 8999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC--------------eEEEEECCCCCeecccccccccceeeeeccc
Q 001367 610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 610 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
++.+..+... ..+..++|+|+++++++++.++ .+++|+..+++.+..+.+|...|.+++|
T Consensus 250 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--- 323 (369)
T 3zwl_B 250 LQVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI--- 323 (369)
T ss_dssp CCEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEE---
T ss_pred CceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE---
Confidence 9999888743 3589999999999999999988 8999999999999999999999999999
Q ss_pred cccccccccCCcccCCCCCCCCCcccccccccccccccccc
Q 001367 676 STVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 676 ~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~ 716 (1091)
+|+++.+++++.|+.|++|++..
T Consensus 324 ------------------s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 324 ------------------SPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ------------------CTTSSEEEEEETTSEEEEEEECH
T ss_pred ------------------CCCCCEEEEEcCCCeEEEEECcc
Confidence 78899999999999999999864
No 72
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.8e-33 Score=321.19 Aligned_cols=302 Identities=12% Similarity=0.115 Sum_probs=229.6
Q ss_pred EEEecccccccceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc-CCCEEEEEECCCeE
Q 001367 569 RTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRI 646 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i 646 (1091)
....+|. ..|++++|+|. ++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+|
T Consensus 113 ~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 113 QKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp CEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred ccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 3444444 78999999994 5689999999999999999887766666555566899999998 78899999999999
Q ss_pred EEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceee
Q 001367 647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 726 (1091)
Q Consensus 647 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 726 (1091)
++||+.++.... +
T Consensus 190 ~iwd~~~~~~~~-~------------------------------------------------------------------ 202 (435)
T 4e54_B 190 RLQDFKGNILRV-F------------------------------------------------------------------ 202 (435)
T ss_dssp EEEETTSCEEEE-E------------------------------------------------------------------
T ss_pred EEeeccCCceeE-E------------------------------------------------------------------
Confidence 999976331100 0
Q ss_pred cCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeE
Q 001367 727 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 806 (1091)
Q Consensus 727 ~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 806 (1091)
. .. ..+...+.+
T Consensus 203 --------------~---------~~---------------------------------------------~~~~~~~~~ 214 (435)
T 4e54_B 203 --------------A---------SS---------------------------------------------DTINIWFCS 214 (435)
T ss_dssp --------------E---------CC---------------------------------------------SSCSCCCCC
T ss_pred --------------e---------cc---------------------------------------------CCCCccEEE
Confidence 0 00 013345677
Q ss_pred EEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceee---eec
Q 001367 807 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS---KLE 882 (1091)
Q Consensus 807 l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~---~l~ 882 (1091)
++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..++++|+.|+.|++||+.+++... ...
T Consensus 215 ~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 215 LDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp EEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred EEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 88999999999987 7999999986 466778889999999999999555689999999999999998876543 346
Q ss_pred cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE---------
Q 001367 883 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--------- 953 (1091)
Q Consensus 883 ~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--------- 953 (1091)
+|...|++++|+|||++|++++.||.|++||+.++............ +.. ...+....|+|++.+++++
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 371 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR-HFQ-HLTPIKAAWHPRYNLIVVGRYPDPNFKS 371 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC-CCS-SSCCCBCEECSSSSCEEEECCCCTTSCC
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc-ccc-cceeEEEEEcCCCCEEEEEEcCCCCeEE
Confidence 79999999999999999999999999999999987643322111110 000 0123345666666666553
Q ss_pred ----ecCeEEEEEcCCcceeeeeecCCccCEEEE-EEeeCCCEEEEEEcCCcEEEEeCCCCceE
Q 001367 954 ----HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1012 (1091)
Q Consensus 954 ----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v-~fs~dg~~l~t~~~dg~v~iwd~~~~~~~ 1012 (1091)
.++.|++||..+++.+..+..+|...|.++ +|+|||++|++|+ |++|+||++.+|+..
T Consensus 372 ~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 372 CTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp SSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 235799999999999998888898899887 6999999999875 889999999988653
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-32 Score=311.76 Aligned_cols=307 Identities=16% Similarity=0.168 Sum_probs=240.7
Q ss_pred EEecCCceeeEEEecccccccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc-CCCE
Q 001367 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL 636 (1091)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 636 (1091)
+|+.........+.+|. ..|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus 57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 45556667777888777 899999999999 899999999999999999998888887545556899999999 7899
Q ss_pred EEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccc
Q 001367 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~ 716 (1091)
|++++.|+.|++||+.+. ....+..
T Consensus 134 l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------------------ 158 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGS-VIQVFAK------------------------------------------------------ 158 (383)
T ss_dssp EEEEETTTEEEEEETTSC-EEEEEEC------------------------------------------------------
T ss_pred EEEEeCCCEEEEEECCCC-ceEEEec------------------------------------------------------
Confidence 999999999999997632 1100000
Q ss_pred cCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCC
Q 001367 717 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 796 (1091)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1091)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCc-EEEEEeCCCeEEEEeccC
Q 001367 797 DSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 797 ~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~la~g~~dg~i~iwd~~~ 874 (1091)
..++...|.+++|+|+++++++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.|+.|++||+.+
T Consensus 159 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 159 TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGG
T ss_pred cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCC
Confidence 001456677888888888888887 688888888 5777888888999999999999 676 999999999999999998
Q ss_pred ----cceeeeeccccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeec--cCCCcC-------CCCCceE
Q 001367 875 ----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSETH 940 (1091)
Q Consensus 875 ----~~~~~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~--~~~~~~-------~~~~i~~ 940 (1091)
+.++..+ +|.+.|++++|+| ++++|++++.|+.|++||+.+++......... ...+.. ....+..
T Consensus 237 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 315 (383)
T 3ei3_B 237 IKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIV 315 (383)
T ss_dssp CCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEE
T ss_pred CCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceE
Confidence 5566666 6999999999999 99999999999999999999866432211110 011111 0023444
Q ss_pred EEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecC-CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC
Q 001367 941 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 941 l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
++|+|||++ ..+.|+.|++||+.+++.+..+... |...+..++|+|||++|++++ ||.|++||+.+
T Consensus 316 ~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 316 AGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 666666666 3357899999999999998886533 467788889999999999997 99999999874
No 74
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.1e-33 Score=310.15 Aligned_cols=298 Identities=11% Similarity=0.127 Sum_probs=230.4
Q ss_pred CcEEEEEcCCCceEEEEEcCC-------CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 336 SPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~d-------g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
+|++++|+|||+ +||+|+.| +.|++|++..+.......+. ......+.+|...|.+++++ +
T Consensus 16 PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~--~ 83 (365)
T 4h5i_A 16 PAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS--K 83 (365)
T ss_dssp CEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE--T
T ss_pred CEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC--C
Confidence 899999999998 77888653 35999999876544321111 11222377899999888765 5
Q ss_pred CEEEEE-----------ECCCEEEEEEeeCCcccce-eEE-----EeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 409 SLLGVA-----------YSKHIVQLYAYHGGSDARQ-QLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 409 ~~las~-----------~~d~~i~iwd~~~~~~~~~-~~~-----~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+.+++| +.|+++++|++.++..... ... ...+...+.+++|||||+.+.+++++.|++|+|||
T Consensus 84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd 163 (365)
T 4h5i_A 84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIID 163 (365)
T ss_dssp TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEE
T ss_pred CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeE
Confidence 566665 3567899999987643221 111 12344568999999999965556777899999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee--eecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
+.+++++..+. |...|.+++|+ +++.++++++.++ +++|+..++.... ....+...+.+++|+|+++++++++.
T Consensus 164 ~~~~~~~~~~~-~~~~V~~v~fs--pdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 164 PSDLTEKFEIE-TRGEVKDLHFS--TDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp TTTTEEEEEEE-CSSCCCEEEEC--TTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCcEEEEeC-CCCceEEEEEc--cCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 99999998886 77889999995 5778999988554 5666666665544 34456778999999999999999988
Q ss_pred CCCCceEEEEEecCCcee----eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEE-eCCCCCCC
Q 001367 550 SKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPE 624 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~ 624 (1091)
++.....+++|++..... ...+.+|. ..|.+++|+|++++|++|+.|++|+|||+.+++++..+ ..|.. .
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~--~ 314 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF--A 314 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS--C
T ss_pred CCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC--C
Confidence 666566789999877653 23455555 88999999999999999999999999999999998876 45544 7
Q ss_pred CceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 625 NPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 625 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
|++++|+|||++|++++.|++|+||+++..
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999754
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=314.92 Aligned_cols=348 Identities=11% Similarity=0.123 Sum_probs=240.2
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeEEEEeC-----------CCCC
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGL 622 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~ 622 (1091)
..+++|+...++....+.+|. ..|.+++|+| +++++++++.||.|++||+.+++....+.. ..+.
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred CcceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 347788888888888888877 9999999999 999999999999999999998765544321 1234
Q ss_pred CCCceEEEcc-CCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccc
Q 001367 623 PENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEI 701 (1091)
Q Consensus 623 ~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~ 701 (1091)
..|.+++|+| ++.++++++.||.|++||+.++.....+.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------------------------- 139 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---------------------------------------- 139 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----------------------------------------
Confidence 4789999999 77889999999999999887553222111
Q ss_pred ccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCcc
Q 001367 702 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 781 (1091)
Q Consensus 702 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 781 (1091)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCceeeecCCCCCCCCCeeEEEecC---CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCc-
Q 001367 782 YQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN- 856 (1091)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~- 856 (1091)
+...+.++++++ ++.++++++ ++.|++||+.+++.+..+..|...|++++|+| ++.
T Consensus 140 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 200 (408)
T 4a11_B 140 ------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDY 200 (408)
T ss_dssp ------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTT
T ss_pred ------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCc
Confidence 122333444444 445777776 68899999999998999999999999999999 565
Q ss_pred EEEEEeCCCeEEEEeccCcc-eeeee---------------ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee
Q 001367 857 VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 920 (1091)
Q Consensus 857 ~la~g~~dg~i~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~ 920 (1091)
++++|+.||.|++||+.++. .+..+ .+|.+.|++++|+|++++|++++.||.|++||+.+++..
T Consensus 201 ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 280 (408)
T 4a11_B 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280 (408)
T ss_dssp EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC
T ss_pred EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc
Confidence 69999999999999998765 33333 578999999999999999999999999999999986632
Q ss_pred eeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCc
Q 001367 921 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 1000 (1091)
Q Consensus 921 ~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~ 1000 (1091)
............. ...........+.+++++.++.|++||+.+++.+.. +.+|...|++++|+||+++|++++.||.
T Consensus 281 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 357 (408)
T 4a11_B 281 LVNYGKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDCN 357 (408)
T ss_dssp CCCCCCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred eeccccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence 2111111111111 123334445556666678999999999999998887 4679999999999999999999999999
Q ss_pred EEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecC
Q 001367 1001 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1001 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
|++|++.+++.+....... ....+.|.....+.+.+.++.+++|+.+
T Consensus 358 i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 358 ILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EEEEEECC----------------------------------------------------
T ss_pred EEEEeCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCc
Confidence 9999999998764433111 0112333234567788899999999874
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-32 Score=310.97 Aligned_cols=298 Identities=16% Similarity=0.230 Sum_probs=244.1
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
..+|.+.+.+.++++++..+ ++++.||.|++||+.+++..... ...|...|.+++|+|+++
T Consensus 87 ~~~~~~~~~~~~~~~s~~~l-~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNLNV-VAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDGS 147 (401)
T ss_dssp CTTCCCCTTCBCEEECTTSE-EEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTSS
T ss_pred CCCCcCCceEEEEeecCCCE-EEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCCC
Confidence 34777665554444334434 66778999999999999876531 223889999999999999
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC-CCceeEEecCCCcce
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGAPV 488 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v 488 (1091)
+|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ ++++++.||.|++||+. .+..+..+.+|...|
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 220 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred EEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence 99999999999999999886554 677999999999994 45 79999999999999998 567788899999999
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
.+++|++ ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+
T Consensus 221 ~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 221 CGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEE
T ss_pred eEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEE
Confidence 9999965 6789999999999999999998888888899999999999998765555432 123778999999999998
Q ss_pred EEEecccccccceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeE
Q 001367 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 646 (1091)
Q Consensus 569 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 646 (1091)
..+... ..+.+++|+|+++.+++++ .||.|++||+.+++.........+...|.+++|+|++++|++++.||.|
T Consensus 298 ~~~~~~----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 298 NTVDAG----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp EEEECS----SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred EEEeCC----CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 888643 5899999999999999954 8999999999997766654433444579999999999999999999999
Q ss_pred EEEECCCCCeeccc
Q 001367 647 KILETPESNSVDAA 660 (1091)
Q Consensus 647 ~iwd~~~~~~~~~~ 660 (1091)
++|++.+++.+...
T Consensus 374 ~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 374 KFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECCC-------
T ss_pred EEEECCCCcccccc
Confidence 99999988665543
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-31 Score=306.86 Aligned_cols=289 Identities=16% Similarity=0.255 Sum_probs=243.6
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
....|+||+++ +||+|. |++|+|||+.+|+.+.... +.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence 57889999875 668875 8999999999998775321 557889999999999999999999
Q ss_pred CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecCCCcceEEEeec
Q 001367 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~ 494 (1091)
.|++|+|||+.+++.++ .+.+|...+.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987655 678999999998885 45 8999999999999998864 4567889999999999985
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCc----eeeecCCCCcEEEEEEcCCCCEE-EEEecCCCCceEEEEEecCCceeeE
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR 569 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~l-~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1091)
+++.++++++.|+.+++|+....+. ......+...|.+++|+|++..+ ++++. ..++.|++||+.+++...
T Consensus 240 --~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 --PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp --TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred --CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 4678999999999999999987653 34567788899999999976544 44443 237789999999999998
Q ss_pred EEecccccccceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 570 ~~~~~~~~~~~v~~v~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
.+..+. .+.++.|+|+++.+++++ .|+.|++||+.+++++..+.+|.. .|.+++|+|+|++|++++.|++|+
T Consensus 316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEE
T ss_pred eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEE
Confidence 887654 789999999999998865 789999999999999999987754 799999999999999999999999
Q ss_pred EEECCCCCeecccc
Q 001367 648 ILETPESNSVDAAG 661 (1091)
Q Consensus 648 iwd~~~~~~~~~~~ 661 (1091)
+||+.+........
T Consensus 390 iWdv~~~~~~~~~~ 403 (420)
T 4gga_A 390 LWRCFELDPARRRE 403 (420)
T ss_dssp EECCSCSSCC----
T ss_pred EEECCCCCccchhh
Confidence 99998765544443
No 78
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-34 Score=321.12 Aligned_cols=289 Identities=12% Similarity=0.063 Sum_probs=225.3
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCC--CceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
...|.++|++++|+|||+ +||+|+.||.|+|||+.++ +.+.. +.+|...|.+++|+|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPK 66 (377)
T ss_dssp EEECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTT
T ss_pred EecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCC
Confidence 344667999999999998 6799999999999999987 44432 7789999999999999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc---eeEEecC-
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG- 483 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~- 483 (1091)
+++|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 99999999999999999999873344446778999999999999999 79999999999999999887 4778887
Q ss_pred CCcceEEEeecccCCceEEEEEecCCeEEEEecCCC------------------CceeeecCCCCcEEEEEEcCCCCEEE
Q 001367 484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL------------------GARVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------------~~~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
|...|.+++|++ ++.+|++++.||.|++||+... .....+ .+...|.+++|+|++++|+
T Consensus 145 h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 145 LRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp CCSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred cCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 999999999965 6689999999999999998532 233344 7788999999999999999
Q ss_pred EEecCCCCceEEEEEecCCcee----eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----------
Q 001367 546 SCGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------- 611 (1091)
Q Consensus 546 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~---------- 611 (1091)
+++. ++.|++||+.+++. +..+.+|. ..|.+++|+|+++++++++.++.+ +|+.....
T Consensus 222 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T 3dwl_C 222 YAGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG 293 (377)
T ss_dssp EEET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred EEeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence 9986 66799999999887 77777777 889999999999999888777666 66554211
Q ss_pred -----------------------------eEEEEeC-----------CCCCCCCceEEEccC-CC---EEEEEECCCeEE
Q 001367 612 -----------------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIK 647 (1091)
Q Consensus 612 -----------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~ 647 (1091)
....... ..+...|.++++.+. +. .+++++.||.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 0000000 013346788886653 33 699999999999
Q ss_pred EEEC
Q 001367 648 ILET 651 (1091)
Q Consensus 648 iwd~ 651 (1091)
+||+
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 79
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.6e-32 Score=296.29 Aligned_cols=254 Identities=13% Similarity=0.157 Sum_probs=211.1
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCC--CceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
+.++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+.. +.+|...|.+++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~ 61 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDW 61 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEE
T ss_pred ceeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEe
Confidence 356789999999999999998 6799999999999999754 33332 7899999999999
Q ss_pred CCC--CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEEEeCCCCce--e
Q 001367 405 SPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR--T 478 (1091)
Q Consensus 405 spd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~--~ 478 (1091)
+|+ +++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|+.|++||+.++.. .
T Consensus 62 s~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 62 AHPKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp CCGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred cCCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceee
Confidence 874 899999999999999999987422 23357789999999999998 77 899999999999999987642 4
Q ss_pred EEecCCCcceEEEeecccC-----------CceEEEEEecCCeEEEEecCCCC----ceeeecCCCCcEEEEEEcCCC--
Q 001367 479 YSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG-- 541 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~d~-- 541 (1091)
..+.+|...|.+++|+|.. ++.+|++++.|+.|++||++... ....+..|...|.+++|+|++
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence 6678999999999998752 35799999999999999998766 345678899999999999985
Q ss_pred -CEEEEEecCCCCceEEEEEecCCce--e-eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001367 542 -RRLFSCGTSKEGESFLVEWNESEGA--I-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 542 -~~l~~~~~~~~~~~~i~iwd~~~~~--~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1091)
++|++++. ++.|++||+.++. . ...+. ...+...|.+++|+|++++|++++.|+.|++|+..
T Consensus 219 ~~~las~s~----D~~v~iWd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 219 RSYMASVSQ----DRTCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SEEEEEEET----TSCEEEEEESSTTSCCEEEESS-SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceEEEEEEC----CCcEEEEEeCCCCCccceeeee-cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 78888886 6679999988743 1 12221 11224789999999999999999999999999976
No 80
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-33 Score=310.07 Aligned_cols=316 Identities=11% Similarity=0.031 Sum_probs=247.8
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
+-...|.+|+|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 13 ~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg--- 64 (588)
T 2j04_A 13 EFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE--- 64 (588)
T ss_dssp CCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC---
T ss_pred HhhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC---
Confidence 4456999999999998 789999999999 7555532 45799999999999999
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc-----
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA----- 486 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----- 486 (1091)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||.|++||..+ ++..+. |..
T Consensus 65 ----~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~ 130 (588)
T 2j04_A 65 ----FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSR 130 (588)
T ss_dssp ----CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTT
T ss_pred ----CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccc
Confidence 4555555554432211 11 5678999999999999 799999999999999544 677777 665
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCc-------eeee----cCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
.|.+++|+ +||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. ++
T Consensus 131 sv~svafS--PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~ 202 (588)
T 2j04_A 131 TYHCFEWN--PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NN 202 (588)
T ss_dssp CEEEEEEC--SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TC
T ss_pred cEEEEEEc--CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CC
Confidence 49999995 5789999999999999999998753 3444 5567799999999999 666665 66
Q ss_pred EEEEEecCCcee---eEEEe-cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE-
Q 001367 556 FLVEWNESEGAI---KRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF- 630 (1091)
Q Consensus 556 ~i~iwd~~~~~~---~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~- 630 (1091)
.+++||+.++.. .+.+. +|. ..|.+++|+ ++.+++++ +++|++||+.+++.......| ...+..++|
T Consensus 203 tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh--~~~V~~va~~ 274 (588)
T 2j04_A 203 SVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS--LENFHIIPLN 274 (588)
T ss_dssp CEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC--CSCCCEEEET
T ss_pred eEEEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--CceEEEEEee
Confidence 799999988774 34553 444 789999999 68888887 699999999988875444343 447999999
Q ss_pred -ccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccc
Q 001367 631 -NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKS 709 (1091)
Q Consensus 631 -s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i 709 (1091)
+|++..+++++.+|+ ++|.... +++ +|++..+++. |+++
T Consensus 275 ~s~d~~~La~a~edG~-klw~~d~----------------~~~---------------------spd~~l~a~~--d~~v 314 (588)
T 2j04_A 275 HEKESTILLMSNKTSY-KVLLEDE----------------LHV---------------------TADNIIAPYL--EKKF 314 (588)
T ss_dssp TCSSCEEEEECSSCEE-EEEESSS----------------EEE---------------------ECCCSSHHHH--HHHH
T ss_pred eCCCCCEEEEEcCCCC-EEEeecc----------------EEE---------------------CCCceEEEEc--CCEE
Confidence 999999999999999 9999771 233 7777777775 8999
Q ss_pred ccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeec
Q 001367 710 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 753 (1091)
Q Consensus 710 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 753 (1091)
++|+..... .. ...+...|.+++|||||+.+++++.
T Consensus 315 ~lW~~~g~~---l~-----~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 315 KKWSTIWNE---FN-----NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHTTTTTTS---SS-----SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEECCCCc---ee-----eeccceEEEEEEECCCCCEEEEEEe
Confidence 999975332 11 1123667999999999998877764
No 81
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2e-32 Score=312.15 Aligned_cols=306 Identities=9% Similarity=0.064 Sum_probs=258.0
Q ss_pred eeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcc---cceeEEEeccccCeeEEEEcCC----C---CceEEE
Q 001367 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAP----C---KQISVI 459 (1091)
Q Consensus 390 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~d----~---~~~~l~ 459 (1091)
..+.+|...|++++|+| ++|++|+.||.|++||+.+++. ......+.+|...|.+++|+|+ + + +|+
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~ 85 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVA 85 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEE
Confidence 34789999999999999 8999999999999999998761 1123367799999999999999 8 8 899
Q ss_pred EeeCCCcEEEEeCCCCce-----eEEecCC-----CcceEEEeeccc--CCceE-EEEEecCCeEEEEecCC------CC
Q 001367 460 TCGDDKTIKVWDAVTGSR-----TYSFEGH-----GAPVYSLCPHAK--ENIHF-IFSISVDGKIKAWLYDS------LG 520 (1091)
Q Consensus 460 s~~~d~~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~~~--~~~~~-l~s~~~dg~i~iwd~~~------~~ 520 (1091)
+++.|+.|++||+.+++. +..+..| ...|.+++|++. +++.+ |++++.||.|++||+.. ..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999999987 8889888 599999999732 56778 99999999999999988 55
Q ss_pred cee-----ee-------cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEec---ccccccceEEEE
Q 001367 521 ARV-----DY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG---LQLQHNSVSVVH 585 (1091)
Q Consensus 521 ~~~-----~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~v~ 585 (1091)
... .+ ..+...+.+++|+|++ .+++++. ++.|++||+.+++.+..+.. |......|.+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC----CCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence 554 55 4577889999999999 8888875 67799999999999999988 611138999999
Q ss_pred EcCCCCEEEEEeCC---CeEEEEECCCCeeEEEEeCCC-----------CCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 586 FDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG-----------GLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 586 ~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
|+|+++++++++.| |.|++||+.+++.+..+.... +...|.+++|+|++++|++++.||.|++||+
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 99999999999999 999999999999998887610 2347899999999999999999999999999
Q ss_pred CCCCeecccc------cc---------------cccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccc
Q 001367 652 PESNSVDAAG------VL---------------SDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSE 710 (1091)
Q Consensus 652 ~~~~~~~~~~------~~---------------~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~ 710 (1091)
.+++.+..+. .| ...|.+++|+|++..++.+ ..+++.+++++.|+.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~-----------~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG-----------ADLNESLCCVCLDRSIR 389 (397)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT-----------CTTSCEEEEEETTTEEE
T ss_pred CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc-----------ccccceEEEecCCCcEE
Confidence 9998888888 77 8899999997665433332 23347899999999999
Q ss_pred ccccc
Q 001367 711 VEKPL 715 (1091)
Q Consensus 711 ~w~~~ 715 (1091)
+|++.
T Consensus 390 iw~~~ 394 (397)
T 1sq9_A 390 WFREA 394 (397)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 99976
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.8e-31 Score=326.86 Aligned_cols=212 Identities=19% Similarity=0.306 Sum_probs=184.5
Q ss_pred EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-----ceeEEecCCCcceEEEeecccCCceEEEEEecCC
Q 001367 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 509 (1091)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 509 (1091)
..+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++ .....+.+|...|.+++|+ +++.+|++++.||
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS--SDGQFALSGSWDG 452 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTS
T ss_pred hhcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEEC--CCCCEEEEEeCCC
Confidence 357899999999999998644 8999999999999998764 3457789999999999995 4678999999999
Q ss_pred eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCC
Q 001367 510 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1091)
Q Consensus 510 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 589 (1091)
.|++||+.++.....+..|...|.+++|+|++++|++++. ++.|++||...............|...|.+++|+|+
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 9999999999888899999999999999999999999986 667999998766554444333334588999999998
Q ss_pred C--CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCC
Q 001367 590 K--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 590 ~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
+ ..+++++.|++|++||+.+++....+..|.. .|.+++|+|++++|++++.||.|++||+.+++
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 7 5799999999999999999999988887654 79999999999999999999999999987654
No 83
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.2e-32 Score=308.31 Aligned_cols=347 Identities=14% Similarity=0.131 Sum_probs=246.6
Q ss_pred heeeecccCCCCcEEEEEcC-CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fsp-dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.....+.+|.+.|++++|+| +++ +||+|+.||.|+|||+.+++.......... .........+|...|.+++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~ 106 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQ 106 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEE
T ss_pred cceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEE
Confidence 45567889999999999999 998 679999999999999999877653221100 0000011246999999999
Q ss_pred ECC-CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC---CCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
|+| ++.+|++++.|+.|++||+.+++... .+ .+...+.++.|++. +. ++++++.|+.|++||+.+++.+.
T Consensus 107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp ECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCE
T ss_pred EccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceee
Confidence 999 78899999999999999999886544 23 37788999999884 44 79999999999999999999999
Q ss_pred EecCCCcceEEEeecccCCce-EEEEEecCCeEEEEecCCCCce-eee---------------cCCCCcEEEEEEcCCCC
Q 001367 480 SFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGAR-VDY---------------DAPGLGCTRMAYSANGR 542 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~-~~~---------------~~~~~~i~~~~~s~d~~ 542 (1091)
.+.+|...|.+++|++. +. ++++++.||.|++||++..... ..+ ..+...|.+++|+|+++
T Consensus 181 ~~~~~~~~v~~~~~~~~--~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 181 ILQGHRQEILAVSWSPR--YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp EECCCCSCEEEEEECSS--CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eecCCCCcEEEEEECCC--CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 99999999999999654 44 6899999999999999876522 222 45777899999999999
Q ss_pred EEEEEecCCCCceEEEEEecCCceeeEEEecccc--cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001367 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1091)
+|++++. ++.|++||+.+++....+..+.. ....+........+..+++++.++.|++||+.+++.+..+..+.
T Consensus 259 ~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 259 HLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp EEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred EEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 9999986 56699999999877655443221 01122222333445677778889999999999999999998765
Q ss_pred CCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcc
Q 001367 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPE 700 (1091)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l 700 (1091)
. .|.+++|+|++++|++++.||.|++|++.+.+.+......... ..+. .......
T Consensus 335 ~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~--------------------~~~~~~~ 389 (408)
T 4a11_B 335 K--TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN--------------------PAFEDAW 389 (408)
T ss_dssp S--CEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------
T ss_pred C--eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc--------------------cccceee
Confidence 4 7999999999999999999999999999988766544332211 1111 2233445
Q ss_pred ccccccccccccccc
Q 001367 701 ISVEAENKSEVEKPL 715 (1091)
Q Consensus 701 ~s~~~d~~i~~w~~~ 715 (1091)
.+.+.++.+++|+..
T Consensus 390 ~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 390 SSSDEEGGTSAWSHP 404 (408)
T ss_dssp ---------------
T ss_pred cccCccCceeecCCc
Confidence 567778999999854
No 84
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=313.54 Aligned_cols=331 Identities=10% Similarity=0.034 Sum_probs=247.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001367 528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1091)
Q Consensus 528 ~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~ 607 (1091)
-...|.+++|+|||+++++++. +++|+ |...++. +.+|. ..|.+++|+|+| .++.+.+|+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~~---l~gh~---~~v~~V~FsPdg-------~~~~~~~~~~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAKD---INCNS---KNLFHVKEFPLE-------FENKLDFELA 74 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCSC---CSSBG---GGTEEEEEECCC-------CCCTTTTSCC
T ss_pred hhccEEEEEECCCCCEEEEEcC----Cceee--cccccce---ecCCC---ccEEEEEECCCC-------CcceEEEEeC
Confidence 3457889999999999999876 67787 6555543 35666 899999999998 4555555554
Q ss_pred CCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCc
Q 001367 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1091)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~ 687 (1091)
+... .+.... ...|.+++|||+|++||+++.||.+++|+..+ .+..+. |...+
T Consensus 75 ~~~~---~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~-------------------- 127 (588)
T 2j04_A 75 QQNG---LLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL-------------------- 127 (588)
T ss_dssp CSSC---SSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS--------------------
T ss_pred CCce---EeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc--------------------
Confidence 3222 222112 35799999999999999999999999999543 211111 11100
Q ss_pred ccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccc
Q 001367 688 VSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 767 (1091)
Q Consensus 688 ~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~ 767 (1091)
....+.+++|||||++|++++.||++++|++.....
T Consensus 128 --------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l 163 (588)
T 2j04_A 128 --------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE 163 (588)
T ss_dssp --------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT
T ss_pred --------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 134688999999999999999999999999764321
Q ss_pred ccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCcee---EEEe-cCCCC
Q 001367 768 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPPSP 843 (1091)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~---~~~~-~~~~~ 843 (1091)
.. +++ ..+.+......+|...|.+++|+||| +++++.|+.|++||+.+++. .+++ .+|..
T Consensus 164 ~~---------~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 164 NT---------PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp TC---------CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred cc---------ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 00 000 00122222223588999999999999 55555699999999988774 3566 46788
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEE--CCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001367 844 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGIQT 921 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~las~s~Dg~i~vwd~~~~~~~~ 921 (1091)
.|.+++|+ ++.||+++ +++|++||+.+++......+|.+.|..++| +||+..|+++++||+ ++|..+.
T Consensus 228 ~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~----- 297 (588)
T 2j04_A 228 KITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE----- 297 (588)
T ss_dssp CCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-----
T ss_pred cEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-----
Confidence 99999998 37888887 699999999988774444489999999999 999999999999999 9999872
Q ss_pred eeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEc
Q 001367 922 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 997 (1091)
Q Consensus 922 ~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~ 997 (1091)
++|+||+..++.. |+++++|+...+. +.. +.+ ...|.+++|||||+.+|+++.
T Consensus 298 -------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~-~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 298 -------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNN-YET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSS-SCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred -------------------EEECCCceEEEEc-CCEEEEEECCCCc-eee-ecc-ceEEEEEEECCCCCEEEEEEe
Confidence 5599999988875 9999999976444 332 333 778999999999999998763
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.2e-31 Score=291.07 Aligned_cols=252 Identities=17% Similarity=0.299 Sum_probs=212.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~i 469 (1091)
+.+|...|.+++|+|+|++||+|+.|++|+|||+.++.. +....+.+|.++|.+++|+++ ++ +|++++.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975421 233478899999999999874 77 8999999999999
Q ss_pred EeCCCCc--eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc--eeeecCCCCcEEEEEEcCC-----
Q 001367 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN----- 540 (1091)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d----- 540 (1091)
||+.+++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||++.... ...+..|...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999998765578999999999999999987642 3566788889999999997
Q ss_pred --------CCEEEEEecCCCCceEEEEEecCCce----eeEEEecccccccceEEEEEcCCC---CEEEEEeCCCeEEEE
Q 001367 541 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW 605 (1091)
Q Consensus 541 --------~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~v~~~~~~---~~l~~~s~dg~i~iw 605 (1091)
+++|++++. ++.|++||+.+++ ....+.+|. ..|.+++|+|++ .+|++++.|++|++|
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 578999886 6679999998765 556677777 899999999985 789999999999999
Q ss_pred ECCCCe--eE-EEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCC
Q 001367 606 DMNKVQ--LL-TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 606 d~~~~~--~~-~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
|++++. .. ..+........|.+++|+|++++|++++.|+.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 988743 12 2232233345689999999999999999999999999763
No 86
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.1e-32 Score=304.51 Aligned_cols=290 Identities=12% Similarity=0.103 Sum_probs=247.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
+..|..+|.+++|+|++++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 44599999999999999999999999999999999875 123346789999999999999999 899999999999999
Q ss_pred CCCCceeEE--ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc----eeeecCCCCcEEEEEEcCCCCEEE
Q 001367 472 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 472 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
+.+++.... +..|...|.+++|++ ++.++++++.||.|++||++.... ......+...+.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 988875544 467999999999964 668999999999999999998774 223356788999999999999999
Q ss_pred EEecCCCCceEEEEEec------------------CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001367 546 SCGTSKEGESFLVEWNE------------------SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1091)
Q Consensus 546 ~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~ 607 (1091)
+++. ++.|++||+ ..++.+..+..|. ..|.+++|+|+++++++++.|+.|++||+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCC---CeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9986 566999995 4677888887766 89999999999999999999999999999
Q ss_pred CCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCC--CC------------------------------
Q 001367 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE--SN------------------------------ 655 (1091)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--~~------------------------------ 655 (1091)
.+++.+..+..+.. .+.+++|+|++++++++ .|+.|++|++.+ +.
T Consensus 232 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 232 DKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp GGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred CCCceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 99999999887644 68999999999988887 899999999987 31
Q ss_pred --ee------ccc-ccccccceeeeeccccccccccccCCcccCCCCCCCC---Ccccccccccccccccccc
Q 001367 656 --SV------DAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDV---KPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 656 --~~------~~~-~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~---~~l~s~~~d~~i~~w~~~~ 716 (1091)
.. ..+ .+|...|+++++. +++| +.+++++.||.|++|++..
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~--------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVL--------------------SGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEE--------------------ESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccCccccccccccccCCcceeEEe--------------------cCCCcceeeEEEecCCCceEEEEecC
Confidence 00 222 4788889988864 4666 8999999999999999763
No 87
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.6e-30 Score=286.32 Aligned_cols=283 Identities=16% Similarity=0.265 Sum_probs=236.4
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
...+|+||+++ +||+|. |++|+|||+.+|+++.... +.+|...|++++|+|++++||+|+
T Consensus 27 y~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs 86 (318)
T 4ggc_A 27 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 86 (318)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEE
Confidence 35789999987 567775 8999999999998875421 557889999999999999999999
Q ss_pred CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecCCCcceEEEeec
Q 001367 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~ 494 (1091)
.|++|++||+.+++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+..++ ..+..+.+|...+..+.+.
T Consensus 87 ~Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 87 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp TTSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 99999999999987655 67899988877665 456 7999999999999998876 4567788999999999985
Q ss_pred ccCCceEEEEEecCCeEEEEecCCCCce----eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEE
Q 001367 495 AKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1091)
+++.++++++.||.|++||+.+++.. .....+...+.+++++|++..++.... +..++.|++||.........
T Consensus 160 --~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 160 --PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp --TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEE
T ss_pred --CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEeccccccccc
Confidence 46679999999999999999876543 345667778999999998765543322 13377899999998887666
Q ss_pred EecccccccceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEE
Q 001367 571 YQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1091)
Q Consensus 571 ~~~~~~~~~~v~~v~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1091)
.... ..+..+.|+|+++.+++++ .|+.|++||+.+++.+..+..|.. .|.+++|+|++++|++++.||+|++
T Consensus 237 ~~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 237 VDAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp EECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEE
T ss_pred ccce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEE
Confidence 5543 5799999999999988765 799999999999999999987754 7999999999999999999999999
Q ss_pred EECCCC
Q 001367 649 LETPES 654 (1091)
Q Consensus 649 wd~~~~ 654 (1091)
||+.+.
T Consensus 311 Wd~~~~ 316 (318)
T 4ggc_A 311 WRCFEL 316 (318)
T ss_dssp ECCSCC
T ss_pred EECCCC
Confidence 998754
No 88
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-31 Score=308.52 Aligned_cols=301 Identities=13% Similarity=0.199 Sum_probs=232.9
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC------------ccE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG------------VSV 399 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V 399 (1091)
.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ........+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCce
Confidence 4677999999999998 679999999999999998763110000 0000112266888 889
Q ss_pred EEEEECCCC--CEEEEEECCCEEEEEEeeCCcccc------------------------------------eeEE-Eecc
Q 001367 400 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQLE-IDAH 440 (1091)
Q Consensus 400 ~~l~~spdg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~~~-~~~h 440 (1091)
.+++|+|++ .+|++++.|++|++||+.++.... .... ..+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999998744210 0011 3579
Q ss_pred ccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC-CceeE-------EecCCCcceEEEeecccCCc-eEEEEEecCCeE
Q 001367 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI 511 (1091)
Q Consensus 441 ~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i 511 (1091)
...|.+++|+|+++ +|+++ .|+.|++||+.+ ++.+. .+.+|...|.+++|++ ++ .+|++++.||.|
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999999999 78888 799999999984 44444 3568999999999965 44 799999999999
Q ss_pred EEEecCCCCc----eeeecCCCC------------cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC-ceeeEEEecc
Q 001367 512 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL 574 (1091)
Q Consensus 512 ~iwd~~~~~~----~~~~~~~~~------------~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~ 574 (1091)
++||+++... ...+..+.. .|.+++|+|++++|++++. +.|++||+.+ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence 9999998876 567777765 8999999999999998863 5799999997 8888888877
Q ss_pred ccccc------------ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-----------------------
Q 001367 575 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----------------------- 619 (1091)
Q Consensus 575 ~~~~~------------~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----------------------- 619 (1091)
..... .+..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 62111 1334899999999999999999999999998876422111
Q ss_pred -------CCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 620 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 620 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
.....|..++|+|++++||+++.++ +++|..+
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1123578899999999999998875 7788644
No 89
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-31 Score=302.34 Aligned_cols=293 Identities=17% Similarity=0.225 Sum_probs=245.7
Q ss_pred eecCCCccEEEEEECCC----CCEEEEEECCCEEEEEEeeCCcccceeEEEe--ccccCeeEEEEcCC----CCceEEEE
Q 001367 391 LVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVIT 460 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d----~~~~~l~s 460 (1091)
+..+|...|.+++|+|+ ...+++++.++.|++||+.+++.+....... .|...|.+++|+|+ ++ +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 46689999999999984 4566666677799999999887665443333 26678999999999 55 8999
Q ss_pred eeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee---cCCCCcEEEEEE
Q 001367 461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAY 537 (1091)
Q Consensus 461 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~ 537 (1091)
++.||.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999999999999999999652 5679999999999999999998888777 678889999999
Q ss_pred cCCCCEEEEEecCCCCceEEEEEecCCceeeEEEec-------------------------ccccccceEEEEEcCCCCE
Q 001367 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKDQ 592 (1091)
Q Consensus 538 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~v~~~~~~~~ 592 (1091)
+|+++++++++. ++.|++||+.+++....+.. ...+...|.+++|+ +++
T Consensus 170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 243 (366)
T 3k26_A 170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL 243 (366)
T ss_dssp CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence 999999999986 56699999998765543332 00134889999998 679
Q ss_pred EEEEeCCCeEEEEECCCCee--------------EEEEeCCCCCCCCceEEEccC--CCEEEEEECCCeEEEEECCCCCe
Q 001367 593 ILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESNS 656 (1091)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~~~~~ 656 (1091)
+++++.|+.|++||+.++.. +..+..+.. .|.+++|+|+ +++|++++.||.|++||+.+++.
T Consensus 244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 99999999999999987643 666665544 6899999999 99999999999999999998864
Q ss_pred ec----ccccc--cccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccccccccc
Q 001367 657 VD----AAGVL--SDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 657 ~~----~~~~~--~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
.. .+..| ...|.+++| +|+++.+++++.|+.|++||+.
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~---------------------s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSF---------------------SRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEE---------------------CTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccceEEcccccCCceEEEEe---------------------CCCCCeEEEEeCCCEEEEEEec
Confidence 43 56666 688999999 7889999999999999999974
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.7e-31 Score=297.90 Aligned_cols=291 Identities=13% Similarity=0.163 Sum_probs=241.8
Q ss_pred eeecCCCccEEEEEECCCCCEEE-EEEC---CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC---CCceEEEEee
Q 001367 390 ALVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG 462 (1091)
Q Consensus 390 ~~~~~h~~~V~~l~~spdg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~~~l~s~~ 462 (1091)
.++.+|...|.+++|+|++..++ +|+. |+.|++||+.+++.... ...+|...|.+++|+|+ ++ +|++++
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence 34678999999999999996655 5554 89999999998864432 23379999999999999 57 799999
Q ss_pred CCCcEEEEeCCCCc-eeEEecCCCcceEEEeecc----cCCceEEEEEecCCeEEEEecCCCC-ceeeecCCCC----cE
Q 001367 463 DDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GC 532 (1091)
Q Consensus 463 ~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~i 532 (1091)
.||.|++||+.+++ .+..+.+|...|.++.+.+ ++++.+|++++.||.|++||+.... ....+..+.. .+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 99999999999988 8899999999999997643 5678899999999999999999887 5556655443 78
Q ss_pred EEEE----EcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcC---CCCEEEEEeCCCeEEEE
Q 001367 533 TRMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIW 605 (1091)
Q Consensus 533 ~~~~----~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~l~~~s~dg~i~iw 605 (1091)
.+++ |+|+++++++++. ++.|++||+.+++.... ..+. ..|.+++|+| +++++++++.||.|++|
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence 8888 7899999999976 66799999999987544 3344 7899999999 99999999999999999
Q ss_pred ECCCCeeEEEEe-----CCCCCCCCceEEEccCCC-EEEEEECCCeEEEEECCCCC-------------------eeccc
Q 001367 606 DMNKVQLLTTID-----AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPESN-------------------SVDAA 660 (1091)
Q Consensus 606 d~~~~~~~~~~~-----~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~-------------------~~~~~ 660 (1091)
|+.+++....+. .+ ...|.+++|+|+++ ++++++.||.|++|++..+. .+..+
T Consensus 240 d~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 240 DMRTQHPTKGFASVSEKAH--KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEEEEETTTEEEEEEEECC--SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred eCcCCCcccceeeeccCCC--cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 998876654443 44 34799999999998 89999999999999988542 45566
Q ss_pred ccccccceeeeeccccccccccccCCcccCCCCCCCCCccc-cccccccccccccc
Q 001367 661 GVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEI-SVEAENKSEVEKPL 715 (1091)
Q Consensus 661 ~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~-s~~~d~~i~~w~~~ 715 (1091)
.+|...|.+++| +|+++.++ +++.|+.|++|++.
T Consensus 318 ~~~~~~v~~~~~---------------------s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 318 TLSTQPISSLDW---------------------SPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp ECCSSCEEEEEE---------------------CSSSTTEEEEEETTSEEEEEEEC
T ss_pred ccCCCCeeEEEE---------------------cCCCCeEEEEecCCCcEEEEECC
Confidence 778888999988 78888888 89999999999976
No 91
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.1e-32 Score=296.14 Aligned_cols=253 Identities=15% Similarity=0.204 Sum_probs=205.2
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 406 (1091)
.++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++.... ..+.+|...|.+++|+|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHP 68 (316)
T ss_dssp -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCG
T ss_pred eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCC
Confidence 45679999999999999998 679999999999999988753211 12778999999999987
Q ss_pred -CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEEEeCCCCce---eEE
Q 001367 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS 480 (1091)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~---~~~ 480 (1091)
++++||+|+.|++|++||+.++... ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++.. ...
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred CCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence 4899999999999999999886422 23367899999999999998 66 799999999999999987632 355
Q ss_pred ecCCCcceEEEeecccC---------------CceEEEEEecCCeEEEEecCCCC---ceeeecCCCCcEEEEEEcCCC-
Q 001367 481 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG- 541 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~d~- 541 (1091)
+.+|...|.+++|++.. ++.+|++++.|+.|++||++... ....+..|...|.+++|+|++
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 67899999999997652 14689999999999999997553 445677888999999999987
Q ss_pred ---CEEEEEecCCCCceEEEEEecCCc---e-eeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001367 542 ---RRLFSCGTSKEGESFLVEWNESEG---A-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 542 ---~~l~~~~~~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~ 608 (1091)
++|++++. ++.|++|++.+. . ....+..|. ..|.+++|+|++++|++++.|++|++|+..
T Consensus 226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999886 778999998763 1 123344454 789999999999999999999999999975
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-30 Score=287.10 Aligned_cols=280 Identities=15% Similarity=0.170 Sum_probs=246.5
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
.+.+|...|++++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 38899999999999 999999999999999999998875444 5678999999999999999 89999999999999
Q ss_pred eCCCC---ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcC-CCCEEEE
Q 001367 471 DAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFS 546 (1091)
Q Consensus 471 d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~ 546 (1091)
++... +.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.+++++| +++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 98754 667888999999999998 345899999999999999 5666777888999999999988 8999999
Q ss_pred EecCCCCceEEEEEecCCceeeEEEec-ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCC
Q 001367 547 CGTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1091)
++. ++.|++|| .++....+.. +. ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+.. .|
T Consensus 161 ~~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i 228 (313)
T 3odt_A 161 ASA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FV 228 (313)
T ss_dssp EET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CE
T ss_pred EEC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eE
Confidence 886 56699999 5566666766 44 8899999999988 99999999999999999999999987654 79
Q ss_pred ceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccc
Q 001367 626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEA 705 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~ 705 (1091)
.+++|+|++ .+++++.||.|++||+.+++....+..+...+.+++| +|+++ +++++.
T Consensus 229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~---------------------~~~~~-~~~~~~ 285 (313)
T 3odt_A 229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDC---------------------MSNGD-IIVGSS 285 (313)
T ss_dssp EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEE---------------------CTTSC-EEEEET
T ss_pred EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEE---------------------ccCCC-EEEEeC
Confidence 999999999 5899999999999999999999999999999999999 67776 667899
Q ss_pred cccccccccccc
Q 001367 706 ENKSEVEKPLFA 717 (1091)
Q Consensus 706 d~~i~~w~~~~~ 717 (1091)
|+.|++|++...
T Consensus 286 dg~i~iw~~~~~ 297 (313)
T 3odt_A 286 DNLVRIFSQEKS 297 (313)
T ss_dssp TSCEEEEESCGG
T ss_pred CCcEEEEeCCCC
Confidence 999999998744
No 93
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.8e-31 Score=294.65 Aligned_cols=286 Identities=9% Similarity=0.057 Sum_probs=241.9
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
....+|.+.|++++|+|+++ +|++|+.||.|+|||+.+++.... ...+.+|...|.+++|+|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~ 67 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDN 67 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEES
T ss_pred ecccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCC
Confidence 34568999999999999998 679999999999999998872211 0114479999999999999
Q ss_pred CC-EEEEEECCCEEEEEEe-eCCcccceeEEEec--cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC---------
Q 001367 408 GS-LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--------- 474 (1091)
Q Consensus 408 g~-~las~~~d~~i~iwd~-~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--------- 474 (1091)
++ +|++|+.|+.|++||+ .+++. ..+.+ |...|.+++|+| ++ ++++++.|+.|++||+.+
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred CCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEccccccccccccc
Confidence 99 9999999999999999 87653 35778 999999999999 77 899999999999999988
Q ss_pred CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC-CCc--eeeecCCCCcEEEEEEcC-CCCEEEEEecC
Q 001367 475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGA--RVDYDAPGLGCTRMAYSA-NGRRLFSCGTS 550 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~ 550 (1091)
++++..+. |...|.+++|++ ++ +++++.|+.|++||++. ... ......+...+.+++|+| +++++++++.
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~- 214 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI- 214 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-
T ss_pred CCeeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-
Confidence 77777776 889999999954 33 99999999999999988 443 334556777899999999 9999999986
Q ss_pred CCCceEEEEEecCCc------eeeEEEecccc------cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 551 KEGESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
++.|++|++... +....+..+.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 215 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 215 ---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp ---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence 667999999887 77778887751 124899999999999999999999999999999999988876
Q ss_pred C-CCCCCCceEEEccCCCEEEEEECCCe-EEEEE
Q 001367 619 G-GGLPENPRICFNKNGTLLAVIANENR-IKILE 650 (1091)
Q Consensus 619 ~-~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iwd 650 (1091)
+ .. .|.+++ |++++|++++.||. .+.+.
T Consensus 292 ~h~~--~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FNED--SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CSSS--EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ccCC--CceEec--CCCCeEEEEecCCccccccc
Confidence 5 43 688888 99999999999998 44444
No 94
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.5e-31 Score=295.60 Aligned_cols=294 Identities=17% Similarity=0.205 Sum_probs=240.9
Q ss_pred CchheeeecccCCCCcEEEEEcCC---CceEEEEEcCCCcEEEEEcCC-CCceeeeceeEEeccccccceeeeeecCCCc
Q 001367 322 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGV 397 (1091)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~fspd---g~~llasg~~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 397 (1091)
.|...++.+.+|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|..
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~ 87 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTG 87 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSS
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccC
Confidence 456778889999999999999999 56 789999999999999998 443311 1667999
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEE--cCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
.|.+++|+|++++|++++.|+.|++||+.+++... +.+|...|.+++| +++++ +|++++.|+.|++||+.++
T Consensus 88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCS
T ss_pred CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCC
Confidence 99999999999999999999999999999876443 5679999999999 88888 8999999999999999999
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec--CCCCcEEEEEEcCCCCE----EEEEec
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGT 549 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~----l~~~~~ 549 (1091)
+.+..+..+. .+.++.+.. ..+++++.++.+++|+++......... .......++++.++... +++++.
T Consensus 162 ~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 162 NPMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp SCSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred cEEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 9999988665 555555532 378899999999999998766554332 23345666666665554 888775
Q ss_pred CCCCceEEEEEecCCc---eeeEEEecccc---------cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001367 550 SKEGESFLVEWNESEG---AIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~---~~~~~~~~~~~---------~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1091)
++.|++||+... .....+.+|.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 237 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 237 ----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp ----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 677999999987 55667777651 01169999999999999999999999999999999998887
Q ss_pred CCCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
.+.. .|.+++|+|++++|++++.|+..+.|+.
T Consensus 313 ~~~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 313 QLDQ--PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CCSS--CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CCCC--CceEEEECCCCCeEEEEecccccccccc
Confidence 6644 7999999999999999999875554443
No 95
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-32 Score=304.37 Aligned_cols=242 Identities=13% Similarity=0.106 Sum_probs=199.0
Q ss_pred cCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCC--cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
..|.++|.+++|+|+|++||+|+.|+.|++||+.++ +... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVY 82 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 346789999999999999999999999999999987 3333 5779999999999999999 79999999999999
Q ss_pred eCCCCc---eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc---eeeecC-CCCcEEEEEEcCCCCE
Q 001367 471 DAVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDA-PGLGCTRMAYSANGRR 543 (1091)
Q Consensus 471 d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~-~~~~i~~~~~s~d~~~ 543 (1091)
|+.+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||++..+. ...+.. |...|.+++|+|++++
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred EcCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 999887 6778889999999999965 667999999999999999998763 556666 8899999999999999
Q ss_pred EEEEecCCCCceEEEEEecC------------------CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001367 544 LFSCGTSKEGESFLVEWNES------------------EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iw 605 (1091)
|++++. ++.|++||+. .++.+..+ +|. ..|.+++|+|++++|++++.||.|++|
T Consensus 161 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~~~~~d~~i~iw 232 (377)
T 3dwl_C 161 LAAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALAYAGHDSSVTIA 232 (377)
T ss_dssp EEEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEEEEETTTEEC-C
T ss_pred EEEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 999986 5669999985 34555555 554 889999999999999999999999999
Q ss_pred ECCCCee----EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 606 DMNKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 606 d~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
|+.+++. +..+..+.. .|.+++|+|++++|++++.++.+ +|+..
T Consensus 233 d~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 233 YPSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred ECCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999887 666665544 68999999999999998877666 66655
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-30 Score=298.64 Aligned_cols=280 Identities=19% Similarity=0.247 Sum_probs=241.6
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1091)
.++.|+||++ ++||+|. |++|+|||+.+|+..+. ..+.+|...|++++|+|+|+ +|++|+.||.|++||+.++++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 4678999986 4788775 89999999999976543 24567888999999999999 899999999999999999999
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce-eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
+..+.+|...+.++++ ++.++++++.|+.+++||....... ..+..|...+..+.++|+++++++++. ++.
T Consensus 182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~ 253 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL 253 (420)
T ss_dssp EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence 9999999999999887 3468999999999999998875544 467889999999999999999999986 667
Q ss_pred EEEEecCCcee----eEEEecccccccceEEEEEcCCCCEE-EE--EeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEE
Q 001367 557 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 557 i~iwd~~~~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l-~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
+++|+..+++. +.....+. ..|.+++|+|++..+ ++ |+.|++|++||+.+++....+..+. .+.++.
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~ 327 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSIL 327 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeee
Confidence 99999987653 34444544 889999999987654 44 3479999999999999999887664 478999
Q ss_pred EccCCCEEEEEE--CCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccc
Q 001367 630 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAEN 707 (1091)
Q Consensus 630 ~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~ 707 (1091)
|+++++.+++++ .|+.|++||+.+++.+..+.+|...|++++| +|+|+.+++++.|+
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~---------------------spdg~~l~S~s~D~ 386 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM---------------------SPDGATVASAAADE 386 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE---------------------CTTSSCEEEEETTT
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE---------------------cCCCCEEEEEecCC
Confidence 999999998876 6899999999999999999999999999999 88899999999999
Q ss_pred cccccccccc
Q 001367 708 KSEVEKPLFA 717 (1091)
Q Consensus 708 ~i~~w~~~~~ 717 (1091)
+|++|++...
T Consensus 387 tvriWdv~~~ 396 (420)
T 4gga_A 387 TLRLWRCFEL 396 (420)
T ss_dssp EEEEECCSCS
T ss_pred eEEEEECCCC
Confidence 9999997643
No 97
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-30 Score=300.46 Aligned_cols=279 Identities=21% Similarity=0.320 Sum_probs=240.8
Q ss_pred ecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 329 ~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
...+|...|+|++| |++ ++++|+.||+|++||+.+++.+.. +.+|...|.+++| ++
T Consensus 128 ~~~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~ 183 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DE 183 (435)
T ss_dssp CCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CS
T ss_pred cccCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CC
Confidence 34567778999888 677 679999999999999999987764 7789999999999 88
Q ss_pred CEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee---EEecCCC
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGHG 485 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~ 485 (1091)
++|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++++.||.|++||+.++... ..+.+|.
T Consensus 184 ~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 256 (435)
T 1p22_A 184 RVIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 256 (435)
T ss_dssp SEEEEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCS
T ss_pred CEEEEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCC
Confidence 999999999999999999987554 6789999999999974 4 7999999999999999988766 6788999
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
..|.++++ ++.++++++.||.|++||+++.+....+..+...+.++.+ +++++++++. ++.|++||+.++
T Consensus 257 ~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~ 326 (435)
T 1p22_A 257 AAVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECG 326 (435)
T ss_dssp SCEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTC
T ss_pred CcEEEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCC
Confidence 99999998 4569999999999999999999999999999999999988 5688999886 667999999999
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---------eEEEEeCCCCCCCCceEEEccCCCE
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGTL 636 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1091)
+.+..+.+|. ..|.+++| ++.++++|+.||.|++||+.++. .+..+..+.. .|.+++| ++.+
T Consensus 327 ~~~~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~ 397 (435)
T 1p22_A 327 ACLRVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQ 397 (435)
T ss_dssp CEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSC
T ss_pred CEEEEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCE
Confidence 9999999887 88999998 78899999999999999997766 6777776654 7899999 6889
Q ss_pred EEEEECCCeEEEEECCCCCee
Q 001367 637 LAVIANENRIKILETPESNSV 657 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~ 657 (1091)
|++++.||.|++||+.+....
T Consensus 398 l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp EEECCSSSEEEEEC-------
T ss_pred EEEEeCCCEEEEEECCCCCCc
Confidence 999999999999999876443
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=4e-31 Score=289.61 Aligned_cols=251 Identities=18% Similarity=0.320 Sum_probs=204.9
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 468 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~ 468 (1091)
++.+|...|++++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++ ++ +|++++.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999987531 23468899999999999864 67 799999999999
Q ss_pred EEeCCCCc--eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc---eeeecCCCCcEEEEEEcCC---
Q 001367 469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN--- 540 (1091)
Q Consensus 469 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d--- 540 (1091)
+||+.+++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||+..... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567788999999999998876678999999999999999987643 2345567778999999997
Q ss_pred --------------CCEEEEEecCCCCceEEEEEecCCc---eeeEEEecccccccceEEEEEcCCC----CEEEEEeCC
Q 001367 541 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD 599 (1091)
Q Consensus 541 --------------~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~s~d 599 (1091)
+++|++++. ++.|++||+..+ +.+..+.+|. ..|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence 467888875 667999999755 4556677766 899999999986 789999999
Q ss_pred CeEEEEECCCC---e-eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCC
Q 001367 600 HVIKIWDMNKV---Q-LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 653 (1091)
Q Consensus 600 g~i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 653 (1091)
++|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|++|++|+...
T Consensus 238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999998762 1 11223323 24689999999999999999999999999763
No 99
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.7e-30 Score=296.24 Aligned_cols=298 Identities=13% Similarity=0.165 Sum_probs=241.5
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-CCCEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV 413 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 413 (1091)
....+++++|+...++++|+.||.|+||++........ ....+.+|...|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35667999999877777889999999999965432210 0112678999999999999 9999999
Q ss_pred EECCCEEEEEEeeCCccc----ceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe--cCCCcc
Q 001367 414 AYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAP 487 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~ 487 (1091)
|+.||+|+|||+.++... .....+.+|...|.+++|+|+++. +|++++.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987432 233468899999999999999843 8999999999999999999999999 889999
Q ss_pred eEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee-cCCCCc-EEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
|.+++|++ ++.+|++++.||.|++||+++.+....+ ..+... +.+++|+|++++++++.. +..++.|++||+.++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence 99999965 6789999999999999999998888777 566654 899999999998888732 123788999999987
Q ss_pred ee-eEEEecccccccceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCee-EEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 566 AI-KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 566 ~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
+. +...... +...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++ .
T Consensus 256 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 256 EEPLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp SSCSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred cCCceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 64 3333321 1367999999999999975 55799999999998874 444444333457999999999988764 5
Q ss_pred CCeEEEEECCCCC
Q 001367 643 ENRIKILETPESN 655 (1091)
Q Consensus 643 dg~i~iwd~~~~~ 655 (1091)
++.+++|++.++.
T Consensus 332 ~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 332 CEIARFYKLHERK 344 (402)
T ss_dssp TEEEEEEEEETTE
T ss_pred ceeEEEEEcCCCc
Confidence 6799999998753
No 100
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.3e-30 Score=289.22 Aligned_cols=307 Identities=10% Similarity=0.112 Sum_probs=227.0
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
.+.+.+|.+.|++++|+|+++ +||+|+.||.|+|||+.++...... ...+.+|...|.+++|+|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~ 67 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWAS 67 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECC
T ss_pred cccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcC
Confidence 356789999999999999998 6799999999999999987543211 112678999999999999
Q ss_pred --CCCEEEEEECCCEEEEEEeeCCccc------ceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEEEeCCCCc
Q 001367 407 --DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 407 --dg~~las~~~d~~i~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
|+++|++|+.|+.|++||+.+++.. .....+.+|...|.+++|+|+ ++ ++++++.|+.|++||+.+++
T Consensus 68 ~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTT
T ss_pred CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChH
Confidence 6999999999999999999987421 334467899999999999999 88 89999999999999999887
Q ss_pred eeEEec-------------CCCcceEEEeeccc-CCceEEEEEecCCeEEEEecCCCCc--eeeecCCCCcEEEEEEcCC
Q 001367 477 RTYSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN 540 (1091)
Q Consensus 477 ~~~~~~-------------~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d 540 (1091)
.+..+. .|...+.+++|++. .++.++++++.++.+.+|+...... ...+..|...|.+++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~ 225 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC
T ss_pred HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC
Confidence 665443 68889999999764 1357999999999998888776665 4567778889999999999
Q ss_pred C----CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE----eCCCeEEEEECCCCee
Q 001367 541 G----RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA----GDDHVIKIWDMNKVQL 612 (1091)
Q Consensus 541 ~----~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~----s~dg~i~iwd~~~~~~ 612 (1091)
+ ++|++++. ++.|++||+.++.......... .........+....+..+ .....+.+|+....+.
T Consensus 226 ~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 226 IGRWYQLIATGCK----DGRIRIFKITEKLSPLASEESL---TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp SSCSSEEEEEEET----TSCEEEEEEEECC------------------------------------------CCSEEEEE
T ss_pred CCCcceEEEEEcC----CCeEEEEeCCCCcCccccCCcc---cceeccCCCcccccccccccccccceeeeecccccccE
Confidence 8 78988876 6679999998775544433322 233333344443333333 3445566777777777
Q ss_pred EEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccc
Q 001367 613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 660 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 660 (1091)
+..+..|.. .|.+++|+|++++|++++.||.|++|++.++..+..+
T Consensus 299 ~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 299 LSEHDDHNG--EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEECTTSS--CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEecccc--cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 787776654 7999999999999999999999999999987655443
No 101
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=7.7e-30 Score=295.84 Aligned_cols=253 Identities=14% Similarity=0.227 Sum_probs=207.9
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcc--------cceeEEEeccc------------cCeeEEEEcCCC-
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC- 453 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~------------~~v~~~~~s~d~- 453 (1091)
|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 678999999999999999999999999999998752 12344678998 889999999998
Q ss_pred -CceEEEEeeCCCcEEEEeCCCCcee---------------------------------------EE-ecCCCcceEEEe
Q 001367 454 -KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSLC 492 (1091)
Q Consensus 454 -~~~~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~ 492 (1091)
. .+++++.|+.|++||+.++... .. ..+|...|.+++
T Consensus 107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 5 7999999999999998775432 12 368999999999
Q ss_pred ecccCCceEEEEEecCCeEEEEecCCCCceee--------ecCCCCcEEEEEEcCCC-CEEEEEecCCCCceEEEEEecC
Q 001367 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
|++ ++.+|+++ .||.|++||++....... +..+...|.+++|+|++ +++++++. ++.|++||+.
T Consensus 185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~ 257 (447)
T 3dw8_B 185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR 257 (447)
T ss_dssp ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence 965 67799998 799999999985443332 45678899999999998 89999986 5679999999
Q ss_pred Ccee----eEEEecccc---------cccceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCCCCC-----
Q 001367 564 EGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE----- 624 (1091)
Q Consensus 564 ~~~~----~~~~~~~~~---------~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~----- 624 (1091)
+++. +..+..+.. +...|.+++|+|++++|++++. +.|++||+.+ ++.+..+..+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 9886 677777650 0128999999999999999999 9999999997 888888877643111
Q ss_pred --------CceEEEccCCCEEEEEECCCeEEEEECCCCCee
Q 001367 625 --------NPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1091)
Q Consensus 625 --------v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1091)
+..++|+|++++|++++.||.|++||+.+++.+
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999988665
No 102
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.5e-30 Score=292.26 Aligned_cols=283 Identities=16% Similarity=0.160 Sum_probs=241.9
Q ss_pred cCCCcc--EEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEe-ccccCeeEEEEcCCCCceEEEEeeCCCcEEE
Q 001367 393 RDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469 (1091)
Q Consensus 393 ~~h~~~--V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i 469 (1091)
.+|... +.+++|++ ..+++++.|+.|++||+.+++... .+. .|...|.+++|+|+++ +|++++.||.|++
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~---~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~i 160 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSA---LAETDESTYVASVKWSHDGS--FLSVGLGNGLVDI 160 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEE---EEECCTTCCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeE---eeecCCCCCEEEEEECCCCC--EEEEECCCCeEEE
Confidence 355544 55567765 568888899999999999987554 233 4889999999999999 8999999999999
Q ss_pred EeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC-CCceeeecCCCCcEEEEEEcCCCCEEEEEe
Q 001367 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1091)
Q Consensus 470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 548 (1091)
||+.+++.+..+.+|...|.+++| ++.++++++.||.|++||++. ......+..+...|.+++|+|+++++++++
T Consensus 161 wd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 161 YDVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 999999999999999999999998 335999999999999999994 555667888999999999999999999998
Q ss_pred cCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE-Ee--CCCeEEEEECCCCeeEEEEeCCCCCCCC
Q 001367 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AG--DDHVIKIWDMNKVQLLTTIDAGGGLPEN 625 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1091)
. ++.|++||+.+++.+..+..|. ..|.+++|+|++..+++ ++ .|+.|++||+.+++.+..+..+. .+
T Consensus 237 ~----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~---~v 306 (401)
T 4aez_A 237 N----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS---QV 306 (401)
T ss_dssp T----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS---CE
T ss_pred C----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC---cE
Confidence 6 5669999999999998888777 89999999998765555 44 69999999999999998887543 58
Q ss_pred ceEEEccCCCEEEEEE--CCCeEEEEECCCCCeec--ccccccccceeeeeccccccccccccCCcccCCCCCCCCCccc
Q 001367 626 PRICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEI 701 (1091)
Q Consensus 626 ~~v~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~ 701 (1091)
.+++|+|+++++++++ .||.|++|++.++.... .+.+|...|.+++| +|+++.++
T Consensus 307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~---------------------s~dg~~l~ 365 (401)
T 4aez_A 307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSAL---------------------SPDGRILS 365 (401)
T ss_dssp EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEE---------------------CTTSSEEE
T ss_pred EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEE---------------------CCCCCEEE
Confidence 9999999999999954 89999999999864443 46688899999998 78899999
Q ss_pred cccccccccccccccc
Q 001367 702 SVEAENKSEVEKPLFA 717 (1091)
Q Consensus 702 s~~~d~~i~~w~~~~~ 717 (1091)
+++.|+.|++|++...
T Consensus 366 s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 366 TAASDENLKFWRVYDG 381 (401)
T ss_dssp EECTTSEEEEEECCC-
T ss_pred EEeCCCcEEEEECCCC
Confidence 9999999999998743
No 103
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.1e-29 Score=277.37 Aligned_cols=277 Identities=19% Similarity=0.254 Sum_probs=236.4
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
.++|+||+++ +||+| .|++|+|||+.+++.++.. .+.+|...|++++|+|+++ ++++|+.|++|++||+.+++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 5779999986 77776 4899999999999866532 4567888999999999999 8999999999999999999999
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce-eeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
..+.+|...+.++.+ ++..+++++.++.+++|+....... ..+..+...+..+.++++++++++++. ++.|
T Consensus 103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i 174 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV 174 (318)
T ss_dssp EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence 999999999988765 3468999999999999998876554 467788899999999999999999986 6679
Q ss_pred EEEecCCceee----EEEecccccccceEEEEEcCCCCEEE---EEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEE
Q 001367 558 VEWNESEGAIK----RTYQGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 630 (1091)
Q Consensus 558 ~iwd~~~~~~~----~~~~~~~~~~~~v~~v~~~~~~~~l~---~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 630 (1091)
++||+.+++.. .....+ ...|.+++++|++..++ +++.++.|++||.............. .+..+.|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~---~v~~~~~ 248 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQH---QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSILW 248 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCC---CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS---CEEEEEE
T ss_pred eEEECCCCcccccceeeeccc---CCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee---eeeeeee
Confidence 99999887532 223333 37899999999876544 45688999999999988877765443 4789999
Q ss_pred ccCCCEEEEEE--CCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccc
Q 001367 631 NKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENK 708 (1091)
Q Consensus 631 s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~ 708 (1091)
+|+++.+++++ .|+.|++||+.+++.+..+.+|...|++++| +|+++++++++.|++
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~---------------------spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM---------------------SPDGATVASAAADET 307 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE---------------------CTTSSCEEEEETTTE
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE---------------------cCCCCEEEEEecCCe
Confidence 99999888765 6899999999999999999999999999999 788999999999999
Q ss_pred ccccccc
Q 001367 709 SEVEKPL 715 (1091)
Q Consensus 709 i~~w~~~ 715 (1091)
|++||+.
T Consensus 308 v~iWd~~ 314 (318)
T 4ggc_A 308 LRLWRCF 314 (318)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 9999975
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.9e-30 Score=287.74 Aligned_cols=261 Identities=13% Similarity=0.156 Sum_probs=215.3
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
+++++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+..... ..+.+|...|++++|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~-----------------~~~~~h~~~v~~~~~~ 64 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWA 64 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEEC
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceee-----------------eEecCCCCcEEEEEeC
Confidence 4577899999999999999998 679999999999999984332211 1277899999999999
Q ss_pred CC--CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEEEeCCCCc--eeE
Q 001367 406 PD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTY 479 (1091)
Q Consensus 406 pd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~ 479 (1091)
|+ +++|++|+.|+.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ...
T Consensus 65 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~ 141 (379)
T 3jrp_A 65 HPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPI 141 (379)
T ss_dssp CGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEE
T ss_pred CCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeE
Confidence 87 999999999999999999997521 23367789999999999999 88 89999999999999999874 345
Q ss_pred EecCCCcceEEEeecccC-----------CceEEEEEecCCeEEEEecCCCCce----eeecCCCCcEEEEEEcCC---C
Q 001367 480 SFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSAN---G 541 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~d---~ 541 (1091)
.+.+|...|.+++|++.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+ +
T Consensus 142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence 667899999999997642 5789999999999999999876543 456778899999999999 8
Q ss_pred CEEEEEecCCCCceEEEEEecCCceee--EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001367 542 RRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1091)
++|++++. ++.|++||+.++... ........+...|.+++|+|++++|++++.||.|++|++..+.
T Consensus 222 ~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 222 SYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 99999886 566999999986421 1222222234789999999999999999999999999987543
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=286.93 Aligned_cols=255 Identities=17% Similarity=0.302 Sum_probs=216.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~i 469 (1091)
+.+|...|++++|+|++++||+|+.|+.|+|||+..+. ......+.+|...|++++|+++ ++ +|++++.||.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 77899999999999999999999999999999998432 2333467899999999999987 77 8999999999999
Q ss_pred EeCCCCc--eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCC--ceeeecCCCCcEEEEEEcC------
Q 001367 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 539 (1091)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 539 (1091)
||+.+++ .+..+..|...|.+++|++..++.++++++.||.|++||+.... ....+..+...+.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999987 77888899999999999776437899999999999999998874 3446677888999999999
Q ss_pred -------CCCEEEEEecCCCCceEEEEEecCCce----eeEEEecccccccceEEEEEcCC---CCEEEEEeCCCeEEEE
Q 001367 540 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 605 (1091)
Q Consensus 540 -------d~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~s~dg~i~iw 605 (1091)
++.++++++. ++.|++||+.++. ....+.+|. ..|.+++|+|+ ++++++++.||.|++|
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999986 5569999998764 445566666 89999999999 8999999999999999
Q ss_pred ECCCCe---eEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCe
Q 001367 606 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656 (1091)
Q Consensus 606 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 656 (1091)
|+.++. .........+...+.+++|+|++++|++++.||.|++|++.....
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 998864 233333333445789999999999999999999999999885533
No 106
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=5.9e-29 Score=280.03 Aligned_cols=290 Identities=16% Similarity=0.148 Sum_probs=238.6
Q ss_pred ecCCCccEEEEEECCC---CCEEEEEECCCEEEEEEeeC-CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcE
Q 001367 392 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 467 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i 467 (1091)
+.+|...|++++|+|+ |++|++|+.||.|++||+.+ +..+ ...+.+|...|.+++|+|+++ +|++++.||.|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v 110 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA 110 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence 7789999999999999 69999999999999999997 4332 235778999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+ ..++++
T Consensus 111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 186 (368)
T 3mmy_A 111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA 186 (368)
T ss_dssp EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence 999999998776 5569999999999777788999999999999999999988887777655 555555554 466666
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCE----EEEEeCCCeEEEEECCCC---eeEEEEeCCC
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG 620 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~----l~~~s~dg~i~iwd~~~~---~~~~~~~~~~ 620 (1091)
+. ++.+.+|++............. ....+.++++.++... +++++.||.|++|++... ..+..+..+.
T Consensus 187 ~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 187 TA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 65 5569999998765433322211 2345666666665554 999999999999999987 4556666553
Q ss_pred CC----------CCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccC
Q 001367 621 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSN 690 (1091)
Q Consensus 621 ~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~ 690 (1091)
.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~------------------ 323 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF------------------ 323 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEE------------------
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEE------------------
Confidence 21 15899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccccccccccccc
Q 001367 691 EDPKEDVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 691 ~~~s~~~~~l~s~~~d~~i~~w~~~ 715 (1091)
+|+++.+++++.|+..+.|++.
T Consensus 324 ---s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 324 ---NHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp ---CTTSSCEEEEECCCSTTCGGGC
T ss_pred ---CCCCCeEEEEeccccccccccc
Confidence 7888999999998887777754
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.7e-29 Score=289.24 Aligned_cols=274 Identities=17% Similarity=0.246 Sum_probs=238.6
Q ss_pred cCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
.+|...|.+++| ++++|++|+.||.|++||+.+++... .+.+|...|.+++| +++ ++++|+.||.|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357778998887 89999999999999999999987554 67899999999999 677 8999999999999999
Q ss_pred CCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCce---eeecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
.+++.+..+.+|...|.+++++ +..+++++.||.|++||+.+.... ..+..+...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999999999984 248999999999999999987765 567788889999998 7889999886
Q ss_pred CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEE
Q 001367 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
++.|++||+.+++.+..+.+|. ..|.++.+ +++++++|+.||.|++||+.+++.+..+..+.. .|.+++
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~ 343 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIR 343 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEE
T ss_pred ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEE
Confidence 6779999999999999999887 88999998 468999999999999999999999999887654 688888
Q ss_pred EccCCCEEEEEECCCeEEEEECCCCC---------eecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcc
Q 001367 630 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPE 700 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l 700 (1091)
| ++.++++|+.||.|++||+.++. .+..+.+|...|.++++ +++.+
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----------------------~~~~l 398 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-----------------------DEFQI 398 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-----------------------CSSCE
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-----------------------CCCEE
Confidence 8 78899999999999999987655 66777788888887765 36779
Q ss_pred ccccccccccccccccc
Q 001367 701 ISVEAENKSEVEKPLFA 717 (1091)
Q Consensus 701 ~s~~~d~~i~~w~~~~~ 717 (1091)
++++.||+|++|++...
T Consensus 399 ~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 399 VSSSHDDTILIWDFLND 415 (435)
T ss_dssp EECCSSSEEEEEC----
T ss_pred EEEeCCCEEEEEECCCC
Confidence 99999999999998743
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.5e-29 Score=279.89 Aligned_cols=285 Identities=10% Similarity=-0.000 Sum_probs=239.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
..+|...|++++|+|++++|++++.|+.|++|++.+++.......+.+|...|.+++|+|+++. +|++++.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999988633333456689999999999999872 388899999999999
Q ss_pred C-CCCceeEEecC--CCcceEEEeecccCCceEEEEEecCCeEEEEecCC---------CCceeeecCCCCcEEEEEEcC
Q 001367 472 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA 539 (1091)
Q Consensus 472 ~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~s~ 539 (1091)
+ .+++. ..+.+ |...|.+++|++ +.++++++.|+.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77754 77888 999999999976 57999999999999999987 55555555 777899999999
Q ss_pred CCCEEEEEecCCCCceEEEEEecCC-cee--eEEEecccccccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-----
Q 001367 540 NGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV----- 610 (1091)
Q Consensus 540 d~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~s~dg~i~iwd~~~~----- 610 (1091)
++ +++++. ++.|++||+.+ +.. ......+. ..+.+++|+| +++++++++.||.|++|+++..
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 88 777765 66799999988 543 22333333 7899999999 9999999999999999999887
Q ss_pred -eeEEEEeCCCC-------CCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccc-cccceeeeeccccccccc
Q 001367 611 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA 681 (1091)
Q Consensus 611 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ 681 (1091)
+....+..+.. ...|.+++|+|++++|++++.||.|++||+.+++.+..+..| ...|.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~---------- 301 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA---------- 301 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE----------
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec----------
Confidence 77777776643 337899999999999999999999999999999999888888 88887765
Q ss_pred cccCCcccCCCCCCCCCcccccccccc-cccccc
Q 001367 682 GIANGSVSNEDPKEDVKPEISVEAENK-SEVEKP 714 (1091)
Q Consensus 682 ~~~~g~~~~~~~s~~~~~l~s~~~d~~-i~~w~~ 714 (1091)
++++.+++++.|++ .+.|..
T Consensus 302 -------------~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 302 -------------CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp -------------ECSSEEEEEEECTHHHHCSSS
T ss_pred -------------CCCCeEEEEecCCcccccccc
Confidence 45677888999988 766664
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.3e-29 Score=281.09 Aligned_cols=295 Identities=10% Similarity=0.110 Sum_probs=221.8
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCccc-ceeEEEeccccCeeEEEEcC--CCCceEEEEeeCCCcE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTI 467 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i 467 (1091)
++.+|...|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| |++ +|++++.||.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 47899999999999999999999999999999999976432 33446779999999999999 588 89999999999
Q ss_pred EEEeCCCC---------ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec------------
Q 001367 468 KVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------------ 526 (1091)
Q Consensus 468 ~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------ 526 (1091)
++||+.++ +.+..+.+|...|.+++|++..++.++++++.||.|++||+++.+....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 557888999999999999765337899999999999999998876544322
Q ss_pred -CCCCcEEEEEEcCC---CCEEEEEecCCCCceEEEEEecCCcee--eEEEecccccccceEEEEEcCCC----CEEEEE
Q 001367 527 -APGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILAA 596 (1091)
Q Consensus 527 -~~~~~i~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~ 596 (1091)
.+...+.+++|+|+ +..+++++. ++.+.+|+...+.. +..+.+|. ..|.+++|+|++ ++++++
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEEE
Confidence 45668999999997 889998876 66687787777665 55566665 899999999998 799999
Q ss_pred eCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE----ECCCeEEEEECCCCCeecccccccccceeeee
Q 001367 597 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI----ANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 597 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1091)
+.||.|++||+.++.......... ........++....++.+ .....+.+|+......+..+.+|...|++++|
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEESL--TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp ETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred cCCCeEEEEeCCCCcCccccCCcc--cceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 999999999998765543332221 122333333333333333 23445566666666777888899999999999
Q ss_pred ccccccccccccCCcccCCCCCCCCCccccccccccccccccccc
Q 001367 673 NPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFA 717 (1091)
Q Consensus 673 ~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~ 717 (1091)
+|+++++++++.|+.|++|++...
T Consensus 315 ---------------------s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 315 ---------------------NLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp ---------------------CSSSCCEEEEETTSCEEEEEECTT
T ss_pred ---------------------cCCCCEEEEecCCCcEEEEecCcC
Confidence 788899999999999999998743
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-28 Score=281.36 Aligned_cols=299 Identities=12% Similarity=0.014 Sum_probs=233.2
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCC---ceeeeceeEEecccc-----------------------------
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKVWDIGAC----------------------------- 383 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~---~~~~~~~~~~~~~~~----------------------------- 383 (1091)
++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 6 p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 6 PLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp CCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC------------------------------
T ss_pred cEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhcccccccccccccccc
Confidence 899999999999 55555 46899999999998 4432 221100
Q ss_pred -----------ccceeeeeecCCCccEEEEEECCCCCEE-EEEECCCEEEEEEee--CCcccceeEEEeccccCeeEEEE
Q 001367 384 -----------SMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAF 449 (1091)
Q Consensus 384 -----------~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~ 449 (1091)
..........+|...|.+++|+|++++| |+|+.|+.|+|||+. +++.+..+. ...|...|.+++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISI 157 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEE
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEE
Confidence 0000111133577789999999999996 889999999999999 776655321 1357789999999
Q ss_pred cCCCCceEEEEeeCCCcEEEEeCCCCceeE----EecCCCcceEEEeeccc-CCceEEEEEecCCeEEEEecCCCCceee
Q 001367 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARVD 524 (1091)
Q Consensus 450 s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 524 (1091)
+|+++ +|++++.|+.|++|++.+++... .+.+|...|.+++|++. ..+.+|++++.|+.|++||+.+......
T Consensus 158 sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 158 AEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK 235 (450)
T ss_dssp CTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred cCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee
Confidence 99999 89999999999999998887554 77889999999999764 2278999999999999999998887776
Q ss_pred -ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc----------------------ccccce
Q 001367 525 -YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNSV 581 (1091)
Q Consensus 525 -~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v 581 (1091)
...|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. .....+
T Consensus 236 ~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 236 WLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp ECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred eecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence 55788999999999 9999999985 6789999999999888886431 123568
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEEC--CCC---eeEEEEeCCCCCCCCceEEEccCCCEEEEEEC------CCeEEEE
Q 001367 582 SVVHFDTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKIL 649 (1091)
Q Consensus 582 ~~v~~~~~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw 649 (1091)
..++|+|+++++++++ .++.|++|++ .++ +.+..+..+ ..+.+++|+|++.++++++. +..|.+|
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence 9999999999999998 8999999999 555 666777765 35899999996433333332 4457888
Q ss_pred ECC
Q 001367 650 ETP 652 (1091)
Q Consensus 650 d~~ 652 (1091)
.+.
T Consensus 388 ~~~ 390 (450)
T 2vdu_B 388 EYN 390 (450)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.6e-27 Score=269.08 Aligned_cols=281 Identities=11% Similarity=0.101 Sum_probs=228.3
Q ss_pred ceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE-EEEECCCEEEEEEe
Q 001367 347 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAY 425 (1091)
Q Consensus 347 ~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~ 425 (1091)
++++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35889999999999999999987754 4445 458999999999987 56668999999999
Q ss_pred eCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEE-EE
Q 001367 426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FS 504 (1091)
Q Consensus 426 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s 504 (1091)
.+++.+. .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|++ ++..+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEE
Confidence 9887554 444444 8999999999994 3456667899999999999998888754 4678888854 55655 78
Q ss_pred EecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEE
Q 001367 505 ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV 584 (1091)
Q Consensus 505 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v 584 (1091)
++.++.|++||+.+++....+..+ ..+.+++|+|+++++++.+. .++.|++||+.+++.+..+..+ ..+.++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~ 205 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGI 205 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccce
Confidence 888999999999988777766654 45689999999998865442 2677999999999888777643 478999
Q ss_pred EEcCCCCEEEEEe---CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEE-EEEECCCeEEEEECCCCCeeccc
Q 001367 585 HFDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAA 660 (1091)
Q Consensus 585 ~~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 660 (1091)
+|+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 9999999999987 68999999999999988887654 36889999999987 56678999999999998887776
Q ss_pred cccccc
Q 001367 661 GVLSDN 666 (1091)
Q Consensus 661 ~~~~~~ 666 (1091)
..+..+
T Consensus 283 ~~~~~~ 288 (391)
T 1l0q_A 283 AVGKNP 288 (391)
T ss_dssp ECSSSE
T ss_pred ECCcCC
Confidence 655443
No 112
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2.4e-27 Score=248.30 Aligned_cols=293 Identities=14% Similarity=0.126 Sum_probs=206.6
Q ss_pred eeEEEEc-CCCCceEEEEeeCCCcEEEEeCCCC---ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC
Q 001367 444 VNDLAFS-APCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1091)
Q Consensus 444 v~~~~~s-~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 519 (1091)
+.++-|- +..+.+.+++++ ...|++|+..++ ++++++.+|..+|..+++.|+.-+-..++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 5566663 455565677777 568999999999 8999999999999999997654332222211
Q ss_pred CceeeecCCCCcEEEEEEcCC----CCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE
Q 001367 520 GARVDYDAPGLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1091)
Q Consensus 520 ~~~~~~~~~~~~i~~~~~s~d----~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 595 (1091)
..+...|.+++++|| ++.+++++. .+.+|++. +++.+.+
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~-------------------------~g~lv~s 150 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLT-------------------------KRRLVSS 150 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEET-------------------------TTEEEEE
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecC-------------------------CCcEEEe
Confidence 123457889999999 888888653 25566543 3333333
Q ss_pred Ee--CCCeEEEEEC-CCCeeEEEEeCCCCCCCCceEEEcc---CCCEEEEEECCCeEEEEECCCCCeeccccccccccee
Q 001367 596 AG--DDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRK 669 (1091)
Q Consensus 596 ~s--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 669 (1091)
++ .|+.|++|++ .+|+.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.+++.+..+.++..
T Consensus 151 s~~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~---- 224 (356)
T 2w18_A 151 SGTLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS---- 224 (356)
T ss_dssp ESSSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----
T ss_pred cccCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc----
Confidence 22 4778888887 44777777776655 678899999 789999999999999999999988877654322
Q ss_pred eeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEE
Q 001367 670 LSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF 749 (1091)
Q Consensus 670 ~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 749 (1091)
+...+.+++|+|+|+.++
T Consensus 225 --------------------------------------------------------------~v~~v~~vafSpdG~~lv 242 (356)
T 2w18_A 225 --------------------------------------------------------------YQASVCHKAYSEMGLLFI 242 (356)
T ss_dssp ----------------------------------------------------------------CCCEEEEEEETTEEEE
T ss_pred --------------------------------------------------------------ceeeeEEEEECCCCCEEE
Confidence 112466778999998777
Q ss_pred EeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEE
Q 001367 750 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYI 828 (1091)
Q Consensus 750 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd 828 (1091)
+++.+.. +| .+++++ |++|++||
T Consensus 243 s~s~~~~--~w------------------------------------------------------~laSGs~D~tIklWd 266 (356)
T 2w18_A 243 VLSHPCA--KE------------------------------------------------------SESLRSPVFQLIVIN 266 (356)
T ss_dssp EEC--------------------------------------------------------------------CCEEEEEEE
T ss_pred EeccCCC--cc------------------------------------------------------eeeccCCCcEEEEEE
Confidence 7664311 11 345665 78899999
Q ss_pred ccCceeEEEe-----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeE-EEEECCCCCEEEE
Q 001367 829 VMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVS 902 (1091)
Q Consensus 829 ~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~las 902 (1091)
..+++.+..+ .+|.....+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|+|
T Consensus 267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 267 PKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp TTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE
T ss_pred CCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE
Confidence 9999887665 345545443333 367899999999999999999999999999988765 5899999999999
Q ss_pred EeCCCcEEEEEc
Q 001367 903 SGGDAQIFVWDV 914 (1091)
Q Consensus 903 ~s~Dg~i~vwd~ 914 (1091)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999996
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.9e-28 Score=272.97 Aligned_cols=283 Identities=13% Similarity=0.119 Sum_probs=215.4
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
.++++.+|.+.|++++|||||+ +||+|+.++ ++|||+.+++.+.. .+...+..++++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~ 67 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRML 67 (355)
T ss_dssp --------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEEC
T ss_pred CccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEc
Confidence 4456689999999999999998 678888765 78999988765542 122258889999
Q ss_pred CCCCEEE-EEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC-ceeEEecC
Q 001367 406 PDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 483 (1091)
Q Consensus 406 pdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 483 (1091)
+++++++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+..
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc
Confidence 9998885 56778999999999987655 343 66789999999864 3333 3789999999988 77766654
Q ss_pred CCcceEEEeecccCCceEEEE--EecCCeEEEEecCCCC----------------ceeeecCCCCcEEEEEEcCCCCEEE
Q 001367 484 HGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 484 ~~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
+...+++++ .+++. ++.||.|++||+.+.. ....+..|...|.+++|+|+|++|+
T Consensus 139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence 333444543 34555 6899999999998765 2567888999999999999999999
Q ss_pred EEecCCCCceE-EEEEecCCceeeEEEe-c-ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEE--E-----
Q 001367 546 SCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T----- 615 (1091)
Q Consensus 546 ~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~----- 615 (1091)
+++. ++. |++||+.+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+.... .
T Consensus 212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp EEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred EEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 9986 776 9999999999999998 5 55 899999999999999999999999999997653211 1
Q ss_pred -------------EeCC-CCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 616 -------------IDAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 616 -------------~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
+... ........++|+++++++++++.||.+++|++..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0011 11122467899999999999999999999987643
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.1e-29 Score=308.18 Aligned_cols=260 Identities=13% Similarity=0.153 Sum_probs=211.9
Q ss_pred eeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 327 ~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
..++.+|.+.|++++|+|+|+ ++++|+.||+|+|||+.++..... ..+.+|...|++++|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~ 63 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAH 63 (753)
T ss_dssp ------CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECC
T ss_pred eeecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecC
Confidence 457899999999999999998 679999999999999985432211 12778999999999999
Q ss_pred C--CCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEEEeCCCCc--eeEE
Q 001367 407 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTYS 480 (1091)
Q Consensus 407 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~ 480 (1091)
+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ ++ ++++++.||.|++||+.++. ....
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence 8 99999999999999999998752 233367789999999999999 88 89999999999999998873 4456
Q ss_pred ecCCCcceEEEeecccC-----------CceEEEEEecCCeEEEEecCCCCc----eeeecCCCCcEEEEEEcCC---CC
Q 001367 481 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSAN---GR 542 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d---~~ 542 (1091)
+.+|...|.+++|++.. ++.++++++.||.|++||++.... ...+..|...|.+++|+|+ ++
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 77899999999997642 568999999999999999988743 3467788999999999999 89
Q ss_pred EEEEEecCCCCceEEEEEecCCceee--EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001367 543 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1091)
++++++. ++.|++||+.++... ........+...|.+++|+|+++++++++.||.|++|++.++.
T Consensus 221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999986 667999999886421 1112222234789999999999999999999999999998643
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.6e-26 Score=262.55 Aligned_cols=328 Identities=11% Similarity=0.118 Sum_probs=251.1
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEE-EEEecCCeEEEEecCCCCceeeecCCCCcEEEE
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 535 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 535 (1091)
++++++.|+.|++||+.+++.+..+..|.. +.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 788999999999999999999999887754 78898854 56655 677799999999999888777776555 89999
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeEE
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT 614 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~ 614 (1091)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.++.|++||+.+++.+.
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK----SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC----CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999999877653 25679999999999888877544 68999999999988 567789999999999999988
Q ss_pred EEeCCCCCCCCceEEEccCCCEE-EEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCC
Q 001367 615 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDP 693 (1091)
Q Consensus 615 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~ 693 (1091)
.+..+. .+..++|+|+++++ ++++.++.|++||+.+++....+.
T Consensus 153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 197 (391)
T 1l0q_A 153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------------------------------- 197 (391)
T ss_dssp EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence 887654 36899999999887 566778999999987542211100
Q ss_pred CCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccce
Q 001367 694 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 773 (1091)
Q Consensus 694 s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 773 (1091)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe----CCeEEEEEccCceeEEEecCCCCCeEEEE
Q 001367 774 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSLA 849 (1091)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 849 (1091)
+...+.+++|+|+|+++++++ ++.|++||+.+++.+..+..+. .+.+++
T Consensus 198 --------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 250 (391)
T 1l0q_A 198 --------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIA 250 (391)
T ss_dssp --------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEE
T ss_pred --------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEE
Confidence 122345566677776666654 5788999998888888887654 578999
Q ss_pred EcCCCCcEE-EEEeCCCeEEEEeccCcceeeeeccccCCeE---EEEECC------------CC----------CEEEEE
Q 001367 850 FNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLVFSD------------AL----------NILVSS 903 (1091)
Q Consensus 850 ~s~~~~~~l-a~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~---~l~~sp------------dg----------~~las~ 903 (1091)
|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.| +. ..+.+.
T Consensus 251 ~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~ 329 (391)
T 1l0q_A 251 VTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDL 329 (391)
T ss_dssp ECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEEC
T ss_pred Ecc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeC
Confidence 999 67666 6778899999999999998888877655421 123222 11 235666
Q ss_pred eCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 904 GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 904 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
+.|..+++|++..+... .. .-....|+++|.+.+.
T Consensus 330 ~~~~~~~~W~~~~g~~~------~~--------~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 330 SKDATEWKWDFGDGSSS------KK--------QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CBSCSEEEEECSSSCEE------CS--------SSCEECCSSCEEEEEE
T ss_pred CCCceEEEEECCCCccc------Cc--------CCCeEEeCCCceEEEE
Confidence 77889999999876521 00 1235689999998876
No 116
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=2.8e-28 Score=277.79 Aligned_cols=286 Identities=13% Similarity=0.145 Sum_probs=232.7
Q ss_pred ccEEEEEECCCCCEEE-EEECCCEEEEEEeeCCcc-cceeEEEeccccCeeEEEEcC-CCCceEEEEeeCCCcEEEEeCC
Q 001367 397 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV 473 (1091)
Q Consensus 397 ~~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~ 473 (1091)
.....++++|+...++ +++.||.|+||++..... ......+.+|.+.|.+++|+| +++ +|++++.||.|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3445688999876554 578899999999965432 233335779999999999999 788 89999999999999999
Q ss_pred CC-------ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee--cCCCCcEEEEEEcCCCCEE
Q 001367 474 TG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRL 544 (1091)
Q Consensus 474 ~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~d~~~l 544 (1091)
++ +.+..+.+|...|.+++|++.. ..+|++++.||.|++||+++.+....+ ..+...|.+++|+|++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 88 6788899999999999996542 259999999999999999999888888 7889999999999999999
Q ss_pred EEEecCCCCceEEEEEecCCceeeEEE-ecccccccceEEEEEcCCCCEEEEE---eCCCeEEEEECCCCee-EEEEeCC
Q 001367 545 FSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDAG 619 (1091)
Q Consensus 545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~~~---s~dg~i~iwd~~~~~~-~~~~~~~ 619 (1091)
++++. ++.|++||+.+++.+..+ .+|. ...+.++.|+|++.++++| +.|+.|++||+.+++. +......
T Consensus 192 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 192 CTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp EEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred EEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence 99986 677999999999998888 5666 2348999999999999998 7999999999998664 3333322
Q ss_pred CCCCCCceEEEccCCCEEEEEE-CCCeEEEEECCCCCe-eccccc--ccccceeeeeccccccccccccCCcccCCCCCC
Q 001367 620 GGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSNEDPKE 695 (1091)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 695 (1091)
+...+.+++|+|+++++++++ .||.|++|++.+++. +..+.. +...+.+++| +|
T Consensus 266 -~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~---------------------sp 323 (402)
T 2aq5_A 266 -TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGY---------------------MP 323 (402)
T ss_dssp -CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEE---------------------CC
T ss_pred -CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEE---------------------ec
Confidence 224689999999999997554 699999999998874 444444 4588899998 66
Q ss_pred CCCccccccccccccccccc
Q 001367 696 DVKPEISVEAENKSEVEKPL 715 (1091)
Q Consensus 696 ~~~~l~s~~~d~~i~~w~~~ 715 (1091)
++..++++ ++.+++|++.
T Consensus 324 ~~~~~~s~--~~~~~~~~l~ 341 (402)
T 2aq5_A 324 KRGLEVNK--CEIARFYKLH 341 (402)
T ss_dssp GGGSCGGG--TEEEEEEEEE
T ss_pred ccccceec--ceeEEEEEcC
Confidence 67766653 4689999976
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.5e-27 Score=249.96 Aligned_cols=270 Identities=11% Similarity=0.072 Sum_probs=199.8
Q ss_pred EEEEEECCCeEEEEECCCC---CeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccc
Q 001367 636 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVE 712 (1091)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w 712 (1091)
.+++++. ..|++|+...+ +.+.+..++..+|..+.+.| |..-++.-.- |
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------------------~~~~~~~~~~-~----- 107 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVP---------------------DVYNLVCVAL-G----- 107 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCT---------------------TCCSCEEEEE-C-----
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcC---------------------cccceeeeee-c-----
Confidence 4555555 79999999998 78888999999999998854 3332321111 0
Q ss_pred cccccCCcccceeecCCccccccEEEEEEecC----CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCC
Q 001367 713 KPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 788 (1091)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d----g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1091)
..+...|.+++++|| ++.++.++.+ +.+|++
T Consensus 108 -----------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l-------------------------- 142 (356)
T 2w18_A 108 -----------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL-------------------------- 142 (356)
T ss_dssp -----------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE--------------------------
T ss_pred -----------------cccccceEEEEECCCccccccEEEeCCCe--EEEEec--------------------------
Confidence 125678999999999 8888886643 555542
Q ss_pred ceeeecCCCCCCCCCeeEEEecCCCCEEEEEe---CCeEEEEEc-cCceeEEEecCCCCCeEEEEEcC--CCCcEEEEEe
Q 001367 789 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIGM 862 (1091)
Q Consensus 789 ~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~s~--~~~~~la~g~ 862 (1091)
++|+++.++. |+.|++|++ .+|+.+..+..|...++.++|++ .++.+||+|+
T Consensus 143 ----------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 143 ----------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp ----------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred ----------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence 3555666654 788888888 45777777778888888888887 4678999999
Q ss_pred CCCeEEEEeccCcceeeeecccc---CCeEEEEECCCCCEE------------EEEeCCCcEEEEEcCCCceeeeeeeec
Q 001367 863 DDSTILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQT 927 (1091)
Q Consensus 863 ~dg~i~iwd~~~~~~~~~l~~h~---~~V~~l~~spdg~~l------------as~s~Dg~i~vwd~~~~~~~~~~~~~~ 927 (1091)
.|++|+|||+.+|+++.++.+|. ..+.+++|||||+++ ++|+.|++|++||..+++......+..
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~ 280 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL 280 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence 99999999999999999998754 367788999999886 668899999999999977554333333
Q ss_pred cCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcceeeeeecCCccCE-EEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 928 PDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPI-SQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 928 ~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v-~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
+.+|.. .+. ..+.++.++|++ .|++|+|||+.+++++.. +.+|...+ ..++|||||++|++|+.|++|+|||
T Consensus 281 p~Gh~~---~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 281 PPGQAG---RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp CTTCCC---CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEE-ECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred cCCCcc---eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEE-ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 456543 333 333448888884 799999999999999988 45676654 4689999999999999999999998
Q ss_pred C
Q 001367 1006 A 1006 (1091)
Q Consensus 1006 ~ 1006 (1091)
+
T Consensus 355 ~ 355 (356)
T 2w18_A 355 Y 355 (356)
T ss_dssp E
T ss_pred C
Confidence 5
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-28 Score=301.74 Aligned_cols=254 Identities=17% Similarity=0.299 Sum_probs=214.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCC--CCceEEEEeeCCCcEEE
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 469 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~i 469 (1091)
+.+|.+.|++++|+|+|++|++|+.||+|+|||+.++.. .....+.+|.++|++++|+|+ ++ +|++|+.||.|++
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~v 81 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 81 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEEE
Confidence 778999999999999999999999999999999985432 334468899999999999988 77 8999999999999
Q ss_pred EeCCCCc--eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCC--ceeeecCCCCcEEEEEEcC------
Q 001367 470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 539 (1091)
Q Consensus 470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 539 (1091)
||+.+++ .+..+.+|...|.+++|++..++.++++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999987 77888899999999999776447899999999999999998873 3446677888999999999
Q ss_pred -------CCCEEEEEecCCCCceEEEEEecCCc----eeeEEEecccccccceEEEEEcCC---CCEEEEEeCCCeEEEE
Q 001367 540 -------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 605 (1091)
Q Consensus 540 -------d~~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~s~dg~i~iw 605 (1091)
++..+++++. ++.|++||+.++ .....+.+|. ..|.+++|+|+ ++++++++.||.|++|
T Consensus 162 ~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp -----CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred cccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 5899999986 566999999877 5556666666 89999999999 8999999999999999
Q ss_pred ECCCCeeE---EEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCC
Q 001367 606 DMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 606 d~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
|+.++... .......+...|.+++|+|+++++++++.||.|++|++..+.
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99886421 112222334578999999999999999999999999998653
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.6e-26 Score=263.57 Aligned_cols=355 Identities=14% Similarity=0.091 Sum_probs=258.1
Q ss_pred CCccEEEEEECCCCCEEEEEECC-CEEEEEEeeCCcccceeEEEeccccCeeEEE---EcCCCCceEEE-----------
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLA---FSAPCKQISVI----------- 459 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~---~s~d~~~~~l~----------- 459 (1091)
....|..+.++|....++..... ...+++... ....+..++ |+|+++.++++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEMD-------------KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR 92 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEEE-------------TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeecc-------------cCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence 44567778888865444443211 112222211 223355566 67766632222
Q ss_pred -EeeCCC--cEEEEeCCCC--ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee-----eecCCC
Q 001367 460 -TCGDDK--TIKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPG 529 (1091)
Q Consensus 460 -s~~~d~--~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~ 529 (1091)
+++.++ .|..||..++ +.+..+..+. .+.+++|++ ++.++++++.++.|++||+.+++... .+..+.
T Consensus 93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 93 IRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp ESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred ecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 223344 4555555445 5556665544 455788865 66788888899999999999887766 344677
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN 608 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~ 608 (1091)
..+.+++|+++++.+++++. ++.|++||+.+++.+..+..+. ..+.+++|+|+++.+++++ .++.|++||+.
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTG---KWSKILLYDPIRDLVYCSNWISEDISVIDRK 242 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSS---SSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCC---CCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence 78999999999999988875 6779999999999988888666 7899999999999886654 79999999999
Q ss_pred CCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE--------CCCeEEEEECCCCCeecccccccccceeeeecccccccc
Q 001367 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--------NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1091)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1091)
+++.+..+..+. .+.+++|+|+++++++++ .|+.|++||+.+++.....
T Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------------------- 299 (433)
T 3bws_A 243 TKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------------------- 299 (433)
T ss_dssp TTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------------
T ss_pred CCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------------
Confidence 999888876543 378999999999999887 3667777776543211100
Q ss_pred ccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEe
Q 001367 681 AGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW 760 (1091)
Q Consensus 681 ~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw 760 (1091)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEE-e-CCeEEEEEccCceeEEEe
Q 001367 761 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILTI 838 (1091)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-dg~i~iwd~~~~~~~~~~ 838 (1091)
.+...+.+++|+|+++.++++ + ++.|++||+.+++.+..+
T Consensus 300 --------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~ 341 (433)
T 3bws_A 300 --------------------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI 341 (433)
T ss_dssp --------------------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred --------------------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe
Confidence 012234567777777655444 3 688999999888888777
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeC---------------CCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEE
Q 001367 839 MPPSPTATSLAFNPHDNNVIAIGMD---------------DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 903 (1091)
Q Consensus 839 ~~~~~~i~~l~~s~~~~~~la~g~~---------------dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 903 (1091)
. +...+.+++|+| ++++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|||++|+++
T Consensus 342 ~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 342 P-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVIS 418 (433)
T ss_dssp E-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEE
T ss_pred c-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEE
Confidence 6 667899999999 8888887776 579999999999988888764 579999999999999988
Q ss_pred eC-CCcEEEEEcCC
Q 001367 904 GG-DAQIFVWDVDG 916 (1091)
Q Consensus 904 s~-Dg~i~vwd~~~ 916 (1091)
+. |+.|++|+++.
T Consensus 419 ~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 419 DFLDHQIRVYRRDG 432 (433)
T ss_dssp ETTTTEEEEEEETT
T ss_pred ECCCCeEEEEEecC
Confidence 75 99999999874
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.2e-27 Score=274.51 Aligned_cols=265 Identities=15% Similarity=0.223 Sum_probs=213.0
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
..+.+|.+.|++++|+|++..++|+|+.||.|+|||+.+...... ..........+.+|...|.+++|+|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~~ 192 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNPN 192 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECTT
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCCC
Confidence 455789999999999998555889999999999999976211000 00000011126789999999999999
Q ss_pred CC-EEEEEECCCEEEEEEeeCCccc----ceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC---ceeE
Q 001367 408 GS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTY 479 (1091)
Q Consensus 408 g~-~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~ 479 (1091)
+. +|++|+.||.|++|++.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++||+.++ +.+.
T Consensus 193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~~ 271 (430)
T 2xyi_A 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPSH 271 (430)
T ss_dssp STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCSE
T ss_pred CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCccee
Confidence 98 9999999999999999874331 223457789999999999995443 8999999999999999987 5778
Q ss_pred EecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC-CCceeeecCCCCcEEEEEEcCCCC-EEEEEecCCCCceEE
Q 001367 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFL 557 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~~~~~~~~i 557 (1091)
.+..|...|++++|++.. ..++++++.||.|++||++. ......+..|...|.+++|+|+++ .+++++. ++.|
T Consensus 272 ~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~i 346 (430)
T 2xyi_A 272 TVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRRL 346 (430)
T ss_dssp EEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSCC
T ss_pred EeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCcE
Confidence 888999999999997642 23799999999999999998 455677888999999999999996 5777765 5679
Q ss_pred EEEecCC--------------ceeeEEEecccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 001367 558 VEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV 610 (1091)
Q Consensus 558 ~iwd~~~--------------~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~~~ 610 (1091)
++||+.. .+.+..+.+|. ..|.+++|+|+++ .+++++.||.|++|++...
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999987 24555555655 8899999999999 8889999999999998754
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=6.9e-27 Score=269.58 Aligned_cols=294 Identities=10% Similarity=0.070 Sum_probs=239.1
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..+..+..+. .+.+++|+|+++ ++++++.++.|++||+.+++.+.... ...+.+|...|.+++|
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~~~~~v~~~~~ 177 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKKKLGFVETISI 177 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHTTCCEEEEEEE
T ss_pred eEEEEEcCCC-CceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecC--------------cccccccCCceeEEEE
Confidence 3445555554 677999999665 88999999999999999998764211 1125679999999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 484 (1091)
+|+++++++++.|+.|++||+.+++... .+..|...+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 253 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKTKLEIRKTDKI 253 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEECCCC
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCCCcEEEEecCC
Confidence 9999999999999999999999876554 56688999999999999994 3456668999999999999998888754
Q ss_pred CcceEEEeecccCCceEEEEEe--------cCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceE
Q 001367 485 GAPVYSLCPHAKENIHFIFSIS--------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 556 (1091)
..+.+++++ +++.++++++ .||.|++||+.+++..... .+...+.+++|+|+++.+++.+. .++.
T Consensus 254 -~~~~~~~~~--~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~---~~~~ 326 (433)
T 3bws_A 254 -GLPRGLLLS--KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM---CCSK 326 (433)
T ss_dssp -SEEEEEEEC--TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET---TTTE
T ss_pred -CCceEEEEc--CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec---CCCE
Confidence 458888885 4667888877 4889999999887655544 23447889999999987766542 2678
Q ss_pred EEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC---------------CCeEEEEECCCCeeEEEEeCCCC
Q 001367 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------------DHVIKIWDMNKVQLLTTIDAGGG 621 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~---------------dg~i~iwd~~~~~~~~~~~~~~~ 621 (1091)
|++||+.+++.+..+.. . ..+.+++|+|+++++++++. ||.|++||+.+++.+..+..+.
T Consensus 327 v~v~d~~~~~~~~~~~~-~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~- 401 (433)
T 3bws_A 327 IEVYDLKEKKVQKSIPV-F---DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN- 401 (433)
T ss_dssp EEEEETTTTEEEEEEEC-S---SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS-
T ss_pred EEEEECCCCcEEEEecC-C---CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC-
Confidence 99999999988877763 3 57899999999999998876 5799999999999998887643
Q ss_pred CCCCceEEEccCCCEEEEEEC-CCeEEEEECC
Q 001367 622 LPENPRICFNKNGTLLAVIAN-ENRIKILETP 652 (1091)
Q Consensus 622 ~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~ 652 (1091)
.+..++|+|++++|++++. |+.|++|++.
T Consensus 402 --~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 402 --QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp --SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred --CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 4789999999999998875 9999999976
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=4.4e-27 Score=261.86 Aligned_cols=295 Identities=13% Similarity=0.119 Sum_probs=211.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
..+|...|.+++|+|||++||+|+.++ ++||++.+++... . .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 467999999999999999999998776 7899998764332 1 22235888899998884 446788889999999
Q ss_pred CCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC-CceeeecCCCCcEEEEEEcCCCCEEEEEecC
Q 001367 472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
+.+++++..+. +...|.++++++ + .++++ .++.|++||+.+. +....+.. +...+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 99999999887 667899999853 3 34433 5889999999887 54444433 444566777 66776522
Q ss_pred CCCceEEEEEecCCce----------------eeEEEecccccccceEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeeE
Q 001367 551 KEGESFLVEWNESEGA----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLL 613 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~ 613 (1091)
..++.|++||+.++. .+..+.+|. ..|.+++|+|++++|++++.|++ |++||+.+++.+
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCS---SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 226679999999865 266777777 89999999999999999999998 999999999999
Q ss_pred EEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeec--cccc-----ccccceee---eeccccccccccc
Q 001367 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAGV-----LSDNLRKL---SVNPISTVTGAGI 683 (1091)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~-----~~~~v~~~---~~~~~~~~~~~~~ 683 (1091)
..+....+...|.+++|+|++++|++++.|++|++||+....... .+.. .....+.+ .+.+..
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 304 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK------- 304 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT-------
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCC-------
Confidence 998732123479999999999999999999999999998653211 1111 00011110 010000
Q ss_pred cCCcccCCCCCCCCCccccccccccccccccccc
Q 001367 684 ANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFA 717 (1091)
Q Consensus 684 ~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~ 717 (1091)
.........+++++.+++++.||.+++|++...
T Consensus 305 -~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 305 -HVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp -TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred -CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 000011122888999999999999999987643
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-27 Score=263.40 Aligned_cols=198 Identities=15% Similarity=0.098 Sum_probs=159.1
Q ss_pred CCCCeeEEEecC--CCCEEEEEe-CCeEEEEEccCceeEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc
Q 001367 800 SQEAVPCFALSK--NDAYLFSAS-GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875 (1091)
Q Consensus 800 ~~~~v~~l~~s~--dg~~la~~~-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~ 875 (1091)
|...|.+++++| +++++++++ ||.|++||+.+++....... +...+++++|+| ++.+|++|+.||.|++||+.++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence 667899999999 999999988 89999999999998777644 455899999999 8999999999999999999999
Q ss_pred cee-eeecc-ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCc--eEEEEcCCCCEEE
Q 001367 876 EVI-SKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE--THIQFHKDQTRFL 951 (1091)
Q Consensus 876 ~~~-~~l~~-h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i--~~l~fs~dg~~la 951 (1091)
+.+ ..+.+ |.++|++++|+|+|.+|++++ |+.|++||+.+++... .+.....+.. .+ .+++|+|+|++|+
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL--AYPTYTIPEF---KTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEE
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce--eecccccccc---cccceEEEECCCCCEEE
Confidence 887 78888 999999999999999999999 4599999999865321 1222111211 23 4699999999999
Q ss_pred EE-e-cCeEEEEEcCCcceeeeeecCCccCEEEEEEee---CCCEEEEEEcCCcEEEEeCCCC
Q 001367 952 LV-H-ETHLAIYEAEELTCLKQWFPISSVPISQATFSC---DCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 952 ~~-~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~---dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
++ . ++.+++|++.+....... .++..++|++ +++.+++++.||.+.++-....
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred EecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 94 4 899999999766544332 4678889998 8999999999999998865443
No 124
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.1e-26 Score=266.46 Aligned_cols=254 Identities=16% Similarity=0.312 Sum_probs=212.9
Q ss_pred eeecCCCccEEEEEECCC-CCEEEEEECCCEEEEEEeeCC-------cccceeEEEeccccCeeEEEEcCCCCceEEEEe
Q 001367 390 ALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461 (1091)
Q Consensus 390 ~~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~ 461 (1091)
....+|.+.|++++|+|+ +.+||+++.+|.|++|++.+. ........+.+|...|.+++|+|++.. +|+++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEE
Confidence 345679999999999997 789999999999999999862 112344478899999999999999876 69999
Q ss_pred eCCCcEEEEeCCCCce-------eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCC---CceeeecCCCCc
Q 001367 462 GDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLG 531 (1091)
Q Consensus 462 ~~d~~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~ 531 (1091)
+.||.|++||+.++.. ...+.+|...|.+++|++. ++.++++++.||.|++||+++. .....+..+...
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 9999999999987432 4667789999999999764 4569999999999999999987 456677788899
Q ss_pred EEEEEEcCCCC-EEEEEecCCCCceEEEEEecCC-ceeeEEEecccccccceEEEEEcCCCC-EEEEEeCCCeEEEEECC
Q 001367 532 CTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 532 i~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~s~dg~i~iwd~~ 608 (1091)
+.+++|+|++. .+++++. ++.|++||+++ +..+..+..|. ..|.+++|+|+++ .+++++.|+.|++||+.
T Consensus 280 v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp EEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred eEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999998 5667765 67799999997 56778888777 8999999999985 58889999999999998
Q ss_pred C--------------CeeEEEEeCCCCCCCCceEEEccCCC-EEEEEECCCeEEEEECCCC
Q 001367 609 K--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 654 (1091)
Q Consensus 609 ~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~ 654 (1091)
. .+.+.....+. ..|.+++|+|+++ ++++++.||.|++|++...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHGGHT--AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECCCCS--SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCccccCccccccCCcceEEEcCCCC--CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 7 24555554443 4699999999999 9999999999999998744
No 125
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.7e-27 Score=270.44 Aligned_cols=265 Identities=15% Similarity=0.091 Sum_probs=219.1
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEe--------------------------------------
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------------------------------------- 438 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------------------- 438 (1091)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999977666 57789999999988222222222
Q ss_pred ----------------ccccCeeEEEEcCCCCceE-EEEeeCCCcEEEEeCC--CCceeEEec--CCCcceEEEeecccC
Q 001367 439 ----------------AHVGNVNDLAFSAPCKQIS-VITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKE 497 (1091)
Q Consensus 439 ----------------~h~~~v~~~~~s~d~~~~~-l~s~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~ 497 (1091)
+|.+.|.+++|+|+++ + +++++.||.|++||+. +++.+..+. .|...|.+++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-- 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-- 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--
Confidence 3444799999999999 5 4899999999999999 888888886 5678899999954
Q ss_pred CceEEEEEecCCeEEEEecCCCCcee----eecCCCCcEEEEEEcCC---CCEEEEEecCCCCceEEEEEecCCceeeEE
Q 001367 498 NIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1091)
++.+|++++.+|.|++|++.+..... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDK 235 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEE
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeee
Confidence 67899999999999999998776543 56678889999999999 999999986 56699999999988777
Q ss_pred -EecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-----------------------CCCCCCc
Q 001367 571 -YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENP 626 (1091)
Q Consensus 571 -~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~ 626 (1091)
+.+|. ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....+.
T Consensus 236 ~~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 236 WLFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp ECCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 44666 899999999 9999999999999999999999988887632 1123578
Q ss_pred eEEEccCCCEEEEEE-CCCeEEEEEC--CCC---Ceecccccccccceeeeeccc
Q 001367 627 RICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNPI 675 (1091)
Q Consensus 627 ~v~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~~~~ 675 (1091)
.++|+|+++++++++ .++.|++|++ .++ ..+..+..+ ..+.+++|+|.
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 999999999999999 8999999999 555 555666666 78999999653
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=5.1e-26 Score=266.26 Aligned_cols=343 Identities=9% Similarity=0.081 Sum_probs=257.3
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCeeE
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL 613 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~--~~~~~~ 613 (1091)
.++|++..++++.. ++.|.+||..+++.+..+.... .+..++|+|+++++++++.|++|++||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 37888877777654 6789999999999999888544 3889999999999999999999999999 889988
Q ss_pred EEEeCCCCCCCCceEEEcc----CCCEEEEEEC-CCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcc
Q 001367 614 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688 (1091)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~ 688 (1091)
..+.... .+..++|+| ||+++++++. +++|.+||..+++.+..+..+...+....+
T Consensus 216 ~~i~~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~---------------- 276 (543)
T 1nir_A 216 AEIKIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY---------------- 276 (543)
T ss_dssp EEEECCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE----------------
T ss_pred EEEecCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc----------------
Confidence 8887533 468999999 9999999884 899999999888776655432111100000
Q ss_pred cCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEE-EeecCceEEEeecCCccc
Q 001367 689 SNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-ALASNGVHLMWRWPRNDL 767 (1091)
Q Consensus 689 ~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~-~~~~dg~i~vw~~~~~~~ 767 (1091)
.....+..+.+++++..++ +...++.+.+||+.....
T Consensus 277 ------------------------------------------~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~ 314 (543)
T 1nir_A 277 ------------------------------------------HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN 314 (543)
T ss_dssp ------------------------------------------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS
T ss_pred ------------------------------------------ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc
Confidence 0123688899999877554 555679999998754321
Q ss_pred ccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecC----C
Q 001367 768 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----P 841 (1091)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~----~ 841 (1091)
+....+ .+...+..++|+|||+++++++ +++|.+||..+++++..+.. |
T Consensus 315 ----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph 369 (543)
T 1nir_A 315 ----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH 369 (543)
T ss_dssp ----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC
T ss_pred ----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC
Confidence 110011 1344577899999999887765 68999999999999988764 4
Q ss_pred CCCeEEEEEcCCCCcEEEEEe-CCCeEEEEeccC-------cceeeeeccccCCeEEEEECCCCCEEEEEe-------CC
Q 001367 842 SPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------GD 906 (1091)
Q Consensus 842 ~~~i~~l~~s~~~~~~la~g~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~las~s-------~D 906 (1091)
......+ ++|+++.+++++. .|++|.+||+.+ .+++.++.+|.+.+..++|+|||++|++++ .+
T Consensus 370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS 448 (543)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHH
T ss_pred CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccC
Confidence 4333333 5774577788775 689999999998 889999999999899999999999999987 27
Q ss_pred CcEEEEEcCCCcee-eeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE------ecCeEEEEEcCCcceeeeee
Q 001367 907 AQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 973 (1091)
Q Consensus 907 g~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~------~d~~i~vwd~~~~~~~~~~~ 973 (1091)
++|.|||+.+++.. ....+....+.......+..++|+|||+.+.++ .++.|.|||.++++++..+.
T Consensus 449 ~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 449 QSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp TCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 79999999997754 211111111111112368999999999999874 25899999999999987754
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-27 Score=264.61 Aligned_cols=270 Identities=10% Similarity=0.063 Sum_probs=211.9
Q ss_pred EEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEE
Q 001367 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420 (1091)
Q Consensus 341 ~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i 420 (1091)
.+.+|+. ++++|+.||+|++||+.+++.+.. +. ...|.+++|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 4456776 789999999999999999987754 11 356778889998 9999999999
Q ss_pred EEEEee---------CCcccceeEEEeccccCeeEEEEcC--CCCceEEEEeeCCCcEEEEeCCCCceeEEec-CCCcce
Q 001367 421 QLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPV 488 (1091)
Q Consensus 421 ~iwd~~---------~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v 488 (1091)
++|+.. +++.++. ...+|.+.|.+++|+| +++ ++++++.||+|++||+.+++.+.... .|...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999765 3322221 1226778999999999 999 89999999999999999999877664 455689
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCce-eeecC-CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1091)
.+++|++ ++.+|++|+.||.|++||+++.... ..+.. |..+|.+++|+|++.+|++++. + .|++||+++++
T Consensus 174 ~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~----~-~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD----Q-TVVCFDLRKDV 246 (343)
T ss_dssp CEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES----S-BEEEEETTSST
T ss_pred EEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC----C-eEEEEEcCCCC
Confidence 9999955 7789999999999999999998887 67777 8899999999999999999973 2 69999999987
Q ss_pred eeEEEecccccccce--EEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc---CCCEEEEE
Q 001367 567 IKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVI 640 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v--~~v~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~ 640 (1091)
....+..+..+...+ .+++|+|+++++++++. |+.+++|++.+....... ..+..++|.+ +.+.++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence 766655422112333 46999999999999988 999999999765433222 1356677887 88899999
Q ss_pred ECCCeEEEEECC
Q 001367 641 ANENRIKILETP 652 (1091)
Q Consensus 641 ~~dg~i~iwd~~ 652 (1091)
+.|+.+.++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 999999887533
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=2.5e-27 Score=268.05 Aligned_cols=276 Identities=7% Similarity=-0.025 Sum_probs=179.7
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC-
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 406 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 406 (1091)
.....|...+....+++++. ++|+|+.|++|+|||+.+++...... ...+.+|.+.|.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~ 147 (393)
T 4gq1_A 83 YSENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADV 147 (393)
T ss_dssp EECC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEE
T ss_pred ccccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEccc
Confidence 34456666666677777776 78999999999999999987654311 123789999999999998
Q ss_pred -------CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 407 -------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 407 -------dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
|+++||+|+.|++|+|||+.++.... .+.+|..+|.+++|+|++.. +|++++.|++|++||+.+++...
T Consensus 148 ~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~ 223 (393)
T 4gq1_A 148 YSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAE 223 (393)
T ss_dssp ECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC---
T ss_pred cccccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccc
Confidence 89999999999999999999876444 56688999999999998864 79999999999999999988776
Q ss_pred EecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEc-CCCCEEEEEecCCCCceEEE
Q 001367 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s-~d~~~l~~~~~~~~~~~~i~ 558 (1091)
....+.......++..... ..........+...+.++.|+ +|++.+++++. ++.++
T Consensus 224 ~~~~~~~~~~~~~~s~~~~-------------------~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~ 280 (393)
T 4gq1_A 224 ENSQTELVKNPWLLTLNTL-------------------PLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWL 280 (393)
T ss_dssp -------CSCCCSEEEESG-------------------GGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEE
T ss_pred cccccCCcccceEEecccc-------------------cceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEE
Confidence 6654433322222111110 011111223456678888886 79999999876 66799
Q ss_pred EEecCCceeeEEEecccccccceEE------------------EEEcC-CC-CEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 559 EWNESEGAIKRTYQGLQLQHNSVSV------------------VHFDT-AK-DQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~------------------v~~~~-~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
+||+.++.....+..+. ..+.. ..++| .+ .++++|+.||+|++||+.+++.......
T Consensus 281 vwd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~ 357 (393)
T 4gq1_A 281 RWNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ 357 (393)
T ss_dssp EEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred EEECccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence 99998887666655443 22222 22333 23 3556688999999999999988877765
Q ss_pred CCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 619 GGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 358 ~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 358 LGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 544 699999999999999998766 555554
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2.4e-25 Score=260.54 Aligned_cols=330 Identities=13% Similarity=0.150 Sum_probs=247.9
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEEC--CCCCeecccccc
Q 001367 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET--PESNSVDAAGVL 663 (1091)
Q Consensus 586 ~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~ 663 (1091)
++|++..+++++.+++|.+||..+++++..+..+.. +..++|+|||++|++++.|+.|.+||+ .+++.+..+.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~---~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-- 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA---VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-- 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT---EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc---cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--
Confidence 788888888899999999999999999999875432 678999999999999999999999999 5543332221
Q ss_pred cccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEec
Q 001367 664 SDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 743 (1091)
Q Consensus 664 ~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 743 (1091)
+...+..++|+|
T Consensus 220 --------------------------------------------------------------------~g~~p~~va~sp 231 (543)
T 1nir_A 220 --------------------------------------------------------------------IGIEARSVESSK 231 (543)
T ss_dssp --------------------------------------------------------------------CCSEEEEEEECC
T ss_pred --------------------------------------------------------------------cCCCcceEEeCC
Confidence 123467889999
Q ss_pred ----CCCeEEEeec-CceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCC-------CCCCCCeeEEEecC
Q 001367 744 ----GGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD-------SNSQEAVPCFALSK 811 (1091)
Q Consensus 744 ----dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~l~~s~ 811 (1091)
||+++++++. ++++.+||....+ ++....... ......+..++++|
T Consensus 232 ~~~~dg~~l~v~~~~~~~v~v~D~~t~~----------------------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 232 FKGYEDRYTIAGAYWPPQFAIMDGETLE----------------------PKQIVSTRGMTVDTQTYHPEPRVAAIIASH 289 (543)
T ss_dssp STTCTTTEEEEEEEESSEEEEEETTTCC----------------------EEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred CcCCCCCEEEEEEccCCeEEEEeccccc----------------------cceeecccCcccCccccccCCceEEEEECC
Confidence 9999888874 7999999864322 122211100 00233788999999
Q ss_pred CCCEEEEEe--CCeEEEEEccCceeEE--EecCCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEEeccCcceeeeecc---
Q 001367 812 NDAYLFSAS--GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEG--- 883 (1091)
Q Consensus 812 dg~~la~~~--dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~la~-g~~dg~i~iwd~~~~~~~~~l~~--- 883 (1091)
++..+++.. ++.|.+||+.+.+.+. .+. +...+..++|+| +++++++ +..+++|.+||+.+++++..+..
T Consensus 290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ 367 (543)
T 1nir_A 290 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT 367 (543)
T ss_dssp SSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred CCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC
Confidence 888776664 6999999998866544 343 556788899999 7776554 55688999999999998887764
Q ss_pred -ccCCeEEEEECCC-CCEEEEEe-CCCcEEEEEcCCCce--eeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe----
Q 001367 884 -HSKRVTGLVFSDA-LNILVSSG-GDAQIFVWDVDGWGI--QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH---- 954 (1091)
Q Consensus 884 -h~~~V~~l~~spd-g~~las~s-~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~---- 954 (1091)
|.+....+ ++|+ |..++++. .|++|.+||+++... ...++++.+.++.. .+..++|+|||++|.++.
T Consensus 368 ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~---~~~~v~~~pdg~~l~v~~~~~~ 443 (543)
T 1nir_A 368 PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG---GSLFIKTHPKSSHLYVDTTFNP 443 (543)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS---CCCCEECCTTCCEEEECCTTCS
T ss_pred CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC---CceEEEcCCCCCcEEEecCCCC
Confidence 65544443 4677 66677775 689999999987210 01234455555443 567899999999999964
Q ss_pred ----cCeEEEEEcCCcceeeeee--------cCCccCEEEEEEeeCCCEEEEEE-----cCCcEEEEeCCCCceEEEee
Q 001367 955 ----ETHLAIYEAEELTCLKQWF--------PISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 955 ----d~~i~vwd~~~~~~~~~~~--------~~h~~~v~~v~fs~dg~~l~t~~-----~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
+++|.|||+.+++.....+ ..+...+..+.|+|||+.|+++. .|+.|.|||..+++++..+.
T Consensus 444 ~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 444 DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 6799999999998874332 34578899999999999988763 37999999999999987776
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=6e-27 Score=264.87 Aligned_cols=328 Identities=13% Similarity=0.092 Sum_probs=203.7
Q ss_pred CcEEEEE---cCCCceEEEEEcCCCcEEEEEcCCCCce-----eeeceeEEecccccc-----ceeeeeecCCCccEEEE
Q 001367 336 SPMSMDF---HPVQHTLLLVGTNVGDTGLWDVNSGQKL-----FIRNFKVWDIGACSM-----LFKTALVRDPGVSVNRV 402 (1091)
Q Consensus 336 ~V~~v~f---spdg~~llasg~~dg~i~iWd~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~~l 402 (1091)
...++.| +|++..+++.|. ++.|.+|+....... .......|+...... .........|...+...
T Consensus 17 ~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (393)
T 4gq1_A 17 RPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVN 95 (393)
T ss_dssp CEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---------
T ss_pred CCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCccee
Confidence 3445555 566655766664 688999986432211 111112222111100 00111133455555556
Q ss_pred EECCCCCEEEEEECCCEEEEEEeeCCcccce--eEEEeccccCeeEEEEcC--------CCCceEEEEeeCCCcEEEEeC
Q 001367 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ--QLEIDAHVGNVNDLAFSA--------PCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~--~~~~~~h~~~v~~~~~s~--------d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
.+++++.+||+++.|++|+|||+.+++.... ...+.+|.+.|++++|+| |++ +|++++.|++|+|||+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRL 173 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEEC
Confidence 6667888999999999999999998865332 223568999999999998 777 8999999999999999
Q ss_pred CCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
.++.++..+.+|..+|.+++|+|. +..+|++++.||+|++||+.+.........+........+++
T Consensus 174 ~~~~~~~~~~~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~------------- 239 (393)
T 4gq1_A 174 TDEGPILAGYPLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL------------- 239 (393)
T ss_dssp ETTEEEEEEEECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE-------------
T ss_pred CCCceeeeecCCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec-------------
Confidence 999888888889999999999764 235899999999999999988765544332221111101100
Q ss_pred CceEEEEEecCCceeeEEEecccccccceEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC----------
Q 001367 553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG---------- 621 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~---------- 621 (1091)
+...........++. ..+.++.|+ |+++.+++++.|+++++||+..++....+..+..
T Consensus 240 --------~~~~~~~~~~~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~ 308 (393)
T 4gq1_A 240 --------NTLPLVNTCHSSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPN 308 (393)
T ss_dssp --------ESGGGC------CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCS
T ss_pred --------ccccceeeeeccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccc
Confidence 000001111122333 678888886 8999999999999999999988776555433221
Q ss_pred ------CCCCceEEEcc--CCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCC
Q 001367 622 ------LPENPRICFNK--NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDP 693 (1091)
Q Consensus 622 ------~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~ 693 (1091)
........++| ++.++++|+.||.|++||..++........|..+|.+++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf--------------------- 367 (393)
T 4gq1_A 309 VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCW--------------------- 367 (393)
T ss_dssp EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEE---------------------
T ss_pred cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEE---------------------
Confidence 01122334444 4456777888999999999999888888889999999999
Q ss_pred CCCCCccccccccccccccc
Q 001367 694 KEDVKPEISVEAENKSEVEK 713 (1091)
Q Consensus 694 s~~~~~l~s~~~d~~i~~w~ 713 (1091)
+|||+.|++++.+| +.+|.
T Consensus 368 spdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 368 HQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp CTTSSEEEEEESSE-EEEEE
T ss_pred cCCCCEEEEEeCCC-eEEEE
Confidence 78888888887655 44444
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=3.7e-25 Score=251.45 Aligned_cols=307 Identities=9% Similarity=0.032 Sum_probs=239.8
Q ss_pred CCCCcEEEEEcCCCceEEEEEc----CCC----cEEEEEc--CCCCceeeeceeEEeccccccceeeeeecCCCccEEEE
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 402 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~----~dg----~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 402 (1091)
+...|...+|++.|..++++|+ .|| +|+|||+ .+++++.... +.+|...+..+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 123 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYA 123 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHH
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHH
Confidence 3458889999999987888886 457 8999999 9998764322 55677777777
Q ss_pred EECC--------------CCCEEEEEECC------CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee
Q 001367 403 VWSP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462 (1091)
Q Consensus 403 ~~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~ 462 (1091)
++++ .+..++.++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++
T Consensus 124 ~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s 197 (415)
T 2hqs_A 124 GHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVT 197 (415)
T ss_dssp HHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEE
T ss_pred HHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEE
Confidence 7664 26677777654 799999998543 33 5678999999999999999 788888
Q ss_pred CCC---cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEE-EEecCCe--EEEEecCCCCceeeecCCCCcEEEEE
Q 001367 463 DDK---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMA 536 (1091)
Q Consensus 463 ~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~ 536 (1091)
.++ .|++||+.+++.. .+..|...+.+++|+| ||+.|+ +++.++. |++||+.+++. ..+..+...+.+++
T Consensus 198 ~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 198 FESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPT 273 (415)
T ss_dssp CTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEE
T ss_pred ecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceE
Confidence 775 9999999998875 5667888899999954 667676 6666654 99999987654 45666777899999
Q ss_pred EcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeE
Q 001367 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLL 613 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~ 613 (1091)
|+|||++|++++.. ++...|++||+.+++.. .+..+. ..+.+++|+|+|++|++++.+ ..|++||+.+++..
T Consensus 274 ~spdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 274 WFPDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp ECTTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred ECCCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence 99999999988742 33557999999888643 333333 578899999999999987754 58999999998774
Q ss_pred EEEeCCCCCCCCceEEEccCCCEEEEEECCC---eEEEEECCCCCeecccccccccceeeeecccc
Q 001367 614 TTIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1091)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 676 (1091)
.+..+. .+..++|+|+|++|++++.++ .|++||+. +.....+..+...|.+++|+|..
T Consensus 349 -~l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 349 -VLSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp -ECCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred -EecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 333322 578999999999999988876 79999987 45567788899999999997753
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.8e-23 Score=258.78 Aligned_cols=302 Identities=13% Similarity=0.091 Sum_probs=212.2
Q ss_pred CCCcEEEEEcCCCceEEEEEcC-CC-----cEEEEEcCCCCceeeeceeEEe-----cccccccee-eeeecCCCccEEE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWD-----IGACSMLFK-TALVRDPGVSVNR 401 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~-dg-----~i~iWd~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~h~~~V~~ 401 (1091)
...|.+++|||||++ |++++. |+ +|.+||+.+++........... +.......+ ...+. ....|.+
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIA-AMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhc-cccCcce
Confidence 347999999999995 566666 87 8999999999865431100000 000000000 00000 0034889
Q ss_pred EEECCCCCEEEEEECCCEEEEEEeeCCc--ccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 402 l~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
++|||||++|++++. +.|++||+.++. ... .+..|...+..++|||||+ .|++++ ++.|++||+.+++...
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999999987 899999999872 222 3567888899999999999 677776 5689999999887765
Q ss_pred EecCCCcc----------------eEEEeecccCCceEEEEEecCC---------------------------------e
Q 001367 480 SFEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------K 510 (1091)
Q Consensus 480 ~~~~~~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~ 510 (1091)
....+... +..++| ++||++|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 54444332 366777 55778898887765 7
Q ss_pred EEEEecCC-CCceeeec--CCCCcEEEEEEcCCCCEEEEEec-CCCCceEEEEEecCCceeeEEEeccccccc---ceEE
Q 001367 511 IKAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSV 583 (1091)
Q Consensus 511 i~iwd~~~-~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~ 583 (1091)
|.+||+.+ ++...... .+...+..++| |||++|++... ....+..|++||+.+++....+..+. .. .+..
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~ 341 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNS 341 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSC
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCc
Confidence 88999887 66554432 35567899999 99999997764 23346789999999998877776544 12 3467
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECC-CCeeEEEEeCCCCCCCCceE-EEccCCCEEEEEEC-CC--eEEEEECC
Q 001367 584 VHFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETP 652 (1091)
Q Consensus 584 v~~~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~-dg--~i~iwd~~ 652 (1091)
++|+|||+.+++++.+|.+.+|.++ ++. ...+..+. ..+..+ .|+|+++.++..+. ++ .+++|++.
T Consensus 342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 342 LRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred eEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 8999999988888899988888765 344 55554432 346666 59999998765554 44 78888765
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.6e-23 Score=237.89 Aligned_cols=306 Identities=13% Similarity=0.111 Sum_probs=224.6
Q ss_pred ccCeeEEEEcCCCCceEEEEee----CCC----cEEEEeC--CCCcee--EEecCCCcceEEEeeccc------------
Q 001367 441 VGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK------------ 496 (1091)
Q Consensus 441 ~~~v~~~~~s~d~~~~~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~~------------ 496 (1091)
...+...+|++.|.. ++++|+ .|| .|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346788899999876 666775 467 8999999 899887 558889888887776531
Q ss_pred CCceEEEEEecC------CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEE
Q 001367 497 ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570 (1091)
Q Consensus 497 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 570 (1091)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 113456666554 7999999975 44556666778899999999999999987542 2468999999998875 4
Q ss_pred EecccccccceEEEEEcCCCCEEE-EEeCCC--eEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC-CC--
Q 001367 571 YQGLQLQHNSVSVVHFDTAKDQIL-AAGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN-- 644 (1091)
Q Consensus 571 ~~~~~~~~~~v~~v~~~~~~~~l~-~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg-- 644 (1091)
+..+. ..+.+++|+|||+.|+ +++.++ .|++||+.+++. ..+..+. ..+..++|+|||++|++++. ++
T Consensus 218 l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 218 VASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS--SCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC--CcccceEECCCCCEEEEEECCCCCc
Confidence 55554 6899999999999888 566555 499999998876 3443333 35789999999999988876 34
Q ss_pred eEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccce
Q 001367 645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 724 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 724 (1091)
.|++||+.++.... +.
T Consensus 292 ~i~~~d~~~~~~~~-l~--------------------------------------------------------------- 307 (415)
T 2hqs_A 292 QVYKVNINGGAPQR-IT--------------------------------------------------------------- 307 (415)
T ss_dssp EEEEEETTSSCCEE-CC---------------------------------------------------------------
T ss_pred EEEEEECCCCCEEE-Ee---------------------------------------------------------------
Confidence 56666655431100 00
Q ss_pred eecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCe
Q 001367 725 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 804 (1091)
Q Consensus 725 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 804 (1091)
.+...+
T Consensus 308 --------------------------------------------------------------------------~~~~~~ 313 (415)
T 2hqs_A 308 --------------------------------------------------------------------------WEGSQN 313 (415)
T ss_dssp --------------------------------------------------------------------------CSSSEE
T ss_pred --------------------------------------------------------------------------cCCCcc
Confidence 012234
Q ss_pred eEEEecCCCCEEEEEe-C---CeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC---eEEEEeccCcce
Q 001367 805 PCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSEV 877 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg---~i~iwd~~~~~~ 877 (1091)
.+++|+|||++|++++ + ..|.+||+.+++.. .+..+. .+.+++|+| ++++|++++.++ .|++||+. +..
T Consensus 314 ~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~ 389 (415)
T 2hqs_A 314 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRF 389 (415)
T ss_dssp EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCC
T ss_pred cCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCc
Confidence 4556666666666554 2 46888998887764 454443 899999999 888888888777 89999987 566
Q ss_pred eeeeccccCCeEEEEECCCCC
Q 001367 878 ISKLEGHSKRVTGLVFSDALN 898 (1091)
Q Consensus 878 ~~~l~~h~~~V~~l~~spdg~ 898 (1091)
...+.+|.+.|.+++|+|.-.
T Consensus 390 ~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 390 KARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEECCCSSSEEEEEEECCCCC
T ss_pred EEEeeCCCCCCcCCccccccc
Confidence 788899999999999999643
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.9e-23 Score=258.03 Aligned_cols=311 Identities=9% Similarity=0.088 Sum_probs=222.8
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc---cEEEEEECCCCCEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG 412 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~la 412 (1091)
.+.+++|||||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 578899999998 5566 6889999999999986543 445554 499999999999999
Q ss_pred EEECC---------CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecC
Q 001367 413 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 483 (1091)
Q Consensus 413 s~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 483 (1091)
+++.+ +.+++||+.+++. +.+....+|...+..++|||||+ .|++++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99864 7889999999875 22222234555689999999999 5777764 7999999999988776655
Q ss_pred CCcce------------------EEEeecccCCceEEEEEecCC----------------------------------eE
Q 001367 484 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI 511 (1091)
Q Consensus 484 ~~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i 511 (1091)
+...+ .+++| ++||+.|++++.++ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 67777 55778898887653 79
Q ss_pred EEEecCCCCceeeecCC------CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccce----
Q 001367 512 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV---- 581 (1091)
Q Consensus 512 ~iwd~~~~~~~~~~~~~------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---- 581 (1091)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+. ...+
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~ 308 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN 308 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence 99999887755555543 55788999999999987776544456789999999998777665432 1233
Q ss_pred EEEEEcCCCCEEEE--EeCCC------eEEEEE-CCCCee--EEEEeCCCCCCCCce-EEEccCCCEEEEEECC---CeE
Q 001367 582 SVVHFDTAKDQILA--AGDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI 646 (1091)
Q Consensus 582 ~~v~~~~~~~~l~~--~s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i 646 (1091)
..++|+|||+.|+. +..++ .|++|| ..++.. ...+... . ..+.. ++|+|||+.|+..+.+ +.+
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~ 386 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence 37899999998775 44666 577777 444441 3333321 1 12333 6899999999877665 789
Q ss_pred EEEECCCCC--eeccccc---ccccceeeeeccccc
Q 001367 647 KILETPESN--SVDAAGV---LSDNLRKLSVNPIST 677 (1091)
Q Consensus 647 ~iwd~~~~~--~~~~~~~---~~~~v~~~~~~~~~~ 677 (1091)
++|++.... ....+.. +...+..++|+|++.
T Consensus 387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~ 422 (723)
T 1xfd_A 387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMD 422 (723)
T ss_dssp EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSS
T ss_pred EEEEEeCCCCCCcceecccccCCCCeEEEEECCCCC
Confidence 999986432 2333332 455567777744433
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.6e-22 Score=250.38 Aligned_cols=331 Identities=11% Similarity=0.016 Sum_probs=233.6
Q ss_pred ccCeeEEEEcCCCCceEEEEeeC-CC-----cEEEEeCCCCceeEEecCCCc------------------------ceEE
Q 001367 441 VGNVNDLAFSAPCKQISVITCGD-DK-----TIKVWDAVTGSRTYSFEGHGA------------------------PVYS 490 (1091)
Q Consensus 441 ~~~v~~~~~s~d~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~------------------------~v~~ 490 (1091)
...+.+++|||||+ +|++++. |+ .|++||+.+++....+..+.. .+.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 44689999999999 7888887 88 899999999988777765443 2777
Q ss_pred EeecccCCceEEEEEecCCeEEEEecCCCC--ceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
++| ++||++|++++. +.|++||+.++. ....+..+...+..++|||||++|++++. +.|++||+.+++..
T Consensus 114 ~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-----~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-----RNLWVIDLASGRQM 185 (741)
T ss_dssp CEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-----TEEEEEETTTTEEE
T ss_pred eEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-----CcEEEEecCCCCEE
Confidence 888 557788988886 999999998873 44455666678999999999999998863 36999999998776
Q ss_pred EEEecccc-------------cccceEEEEEcCCCCEEEEEeCCC---------------------------------eE
Q 001367 569 RTYQGLQL-------------QHNSVSVVHFDTAKDQILAAGDDH---------------------------------VI 602 (1091)
Q Consensus 569 ~~~~~~~~-------------~~~~v~~v~~~~~~~~l~~~s~dg---------------------------------~i 602 (1091)
+....+.. ....+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 55443320 001147799999999999987665 78
Q ss_pred EEEECCC-CeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC-----CCeEEEEECCCCCeecccccccccceeeeecccc
Q 001367 603 KIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-----ENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 676 (1091)
Q Consensus 603 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 676 (1091)
++||+.+ ++.........+...+..++| |||++|+++.. +..|++||+.+++.......+.
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------------ 332 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS------------ 332 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC------------
Confidence 9999988 876554332122335788999 99999987764 4567777766543221111000
Q ss_pred ccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCce
Q 001367 677 TVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 756 (1091)
Q Consensus 677 ~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~ 756 (1091)
+
T Consensus 333 -----------------------------------------------------------------------------~-- 333 (741)
T 2ecf_A 333 -----------------------------------------------------------------------------P-- 333 (741)
T ss_dssp -----------------------------------------------------------------------------S--
T ss_pred -----------------------------------------------------------------------------C--
Confidence 0
Q ss_pred EEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEEcc-Ccee
Q 001367 757 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM-TFKT 834 (1091)
Q Consensus 757 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~-~~~~ 834 (1091)
.....+..++|+|||+++++++ +|.++||.+. +++
T Consensus 334 ------------------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~- 370 (741)
T 2ecf_A 334 ------------------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK- 370 (741)
T ss_dssp ------------------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-
T ss_pred ------------------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-
Confidence 0001223456777777666555 4555565554 344
Q ss_pred EEEecCCCCCeEEE-EEcCCCCcEE-EEEeCCC--eEEEEeccC-cceeeeeccccCCeEEEEECCCCCEEEEEeCC---
Q 001367 835 ILTIMPPSPTATSL-AFNPHDNNVI-AIGMDDS--TILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGD--- 906 (1091)
Q Consensus 835 ~~~~~~~~~~i~~l-~~s~~~~~~l-a~g~~dg--~i~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~las~s~D--- 906 (1091)
...+..+...+..+ +|+| +++.| ++++.++ .++||++.. +.....+.. ...+..++|||||++|+....+
T Consensus 371 ~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~ 448 (741)
T 2ecf_A 371 AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNST 448 (741)
T ss_dssp EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTE
T ss_pred eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCC
Confidence 66777777788887 5999 66655 5555565 899999875 555666765 6678999999999998876544
Q ss_pred -CcEEEEEcCCCc
Q 001367 907 -AQIFVWDVDGWG 918 (1091)
Q Consensus 907 -g~i~vwd~~~~~ 918 (1091)
..+.+|+..++.
T Consensus 449 p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 449 PPQIELFRANGEK 461 (741)
T ss_dssp EEEEEEEETTSCE
T ss_pred CCeEEEEEcCCCe
Confidence 468899986643
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=8.1e-23 Score=252.34 Aligned_cols=385 Identities=11% Similarity=0.084 Sum_probs=253.3
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC---------Ce
Q 001367 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV 601 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d---------g~ 601 (1091)
...+++|+|||+++++ +. ++.|++||..+++....+..+......+.+++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997755 32 5579999999998887777655111248999999999999998764 78
Q ss_pred EEEEECCCCeeEEEEeC-CCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccccc
Q 001367 602 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 680 (1091)
Q Consensus 602 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 680 (1091)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|++.++........+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------------- 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------------- 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence 89999999886 33332 222234788999999999999987 799999998775543322211111
Q ss_pred ccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC-ceEEE
Q 001367 681 AGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLM 759 (1091)
Q Consensus 681 ~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~v 759 (1091)
+..|-. -|-.+ ..-...+.+++|||||+.|++++.+ +.+.+
T Consensus 158 -------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~ 199 (723)
T 1xfd_A 158 -------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVPI 199 (723)
T ss_dssp -------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSCE
T ss_pred -------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccce
Confidence 000000 00000 0011245789999999999888765 45666
Q ss_pred eecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEec
Q 001367 760 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM 839 (1091)
Q Consensus 760 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~ 839 (1091)
|++.... + .+...+..+.++++|.. ..+..|++||+.+++....+.
T Consensus 200 ~~~~~~~--------------------~-----------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 200 MELPTYT--------------------G-----------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp EEECCCS--------------------S-----------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECC
T ss_pred EEeeccC--------------------C-----------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEee
Confidence 6643210 0 12234678888888863 123579999999988766666
Q ss_pred CC------CCCeEEEEEcCCCCcEEEEEeC----CCeEEEEeccCcceeeeecc-ccCCe----EEEEECCCCCEEEE--
Q 001367 840 PP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEG-HSKRV----TGLVFSDALNILVS-- 902 (1091)
Q Consensus 840 ~~------~~~i~~l~~s~~~~~~la~g~~----dg~i~iwd~~~~~~~~~l~~-h~~~V----~~l~~spdg~~las-- 902 (1091)
.+ ...+..++||| ||++|++... +..|++||+.+++....+.. |.+.+ ..++|||||+.|+.
T Consensus 246 ~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 324 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR 324 (723)
T ss_dssp CCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE
T ss_pred CCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEE
Confidence 54 55789999999 8888877653 35899999999987766544 33434 37899999998775
Q ss_pred EeCCC------cEEEEE-cCCCceeeeeeeecc-CCCcCCCCCceE-EEEcCCCCEEEE-Eec---CeEEEEEcCCcc--
Q 001367 903 SGGDA------QIFVWD-VDGWGIQTCRSLQTP-DGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT-- 967 (1091)
Q Consensus 903 ~s~Dg------~i~vwd-~~~~~~~~~~~~~~~-~~~~~~~~~i~~-l~fs~dg~~la~-~~d---~~i~vwd~~~~~-- 967 (1091)
+..++ .|.+|| ..++... +...+ .++. .+.. ++|||||+.|+. +.+ +.+++|++....
T Consensus 325 ~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~ 397 (723)
T 1xfd_A 325 AIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF 397 (723)
T ss_dssp EECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC
T ss_pred ecccCCCcceeEEEEEeccCCCCcc---ceeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC
Confidence 45666 466677 3443200 01112 2222 2443 699999999986 444 679999986432
Q ss_pred eeeeeecC--CccCEEEEEEeeCCCEEEEEEcC-C--cEEEEeCCCCceEEEe
Q 001367 968 CLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 968 ~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~d-g--~v~iwd~~~~~~~~~~ 1015 (1091)
....+... |...+..++|||||++|+..... + .+.+++..++..+..+
T Consensus 398 ~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 398 NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 23322221 56778899999999988865433 2 3445666666554443
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=2.1e-21 Score=214.55 Aligned_cols=281 Identities=10% Similarity=0.067 Sum_probs=206.2
Q ss_pred EEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC-CC
Q 001367 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH 418 (1091)
Q Consensus 340 v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~ 418 (1091)
..|++++.+++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457788887889999999999999999987754 22345566 9999999998777765 88
Q ss_pred EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC-C--cEEEEeCCCCceeEEecCCCcceEEEeecc
Q 001367 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1091)
.|.+||+.+++.. ...+..+..+..+++|+|||+ +++++..+ + .|.+||+.+++.+..+..+. ...+++|++
T Consensus 63 ~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~sp 137 (331)
T 3u4y_A 63 TLVQIETQLEPPK--VVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISP 137 (331)
T ss_dssp EEEEEECSSSSCE--EEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECT
T ss_pred eEEEEECCCCcee--EEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECC
Confidence 9999999998751 224555666665599999999 56655544 3 89999999999888876543 457888855
Q ss_pred cCCce-EEEEEecCCe-EEEEecCCCCcee----eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee--
Q 001367 496 KENIH-FIFSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-- 567 (1091)
Q Consensus 496 ~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-- 567 (1091)
+++ ++++...++. |.+|+++...... ...........++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 138 --dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 138 --NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp --TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred --CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 555 4455556688 9999998655432 22233456789999999998776653 256799999999887
Q ss_pred -eEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCee--EEEEeCC----CC-CCCCceEEEccCCCEEE
Q 001367 568 -KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLLA 638 (1091)
Q Consensus 568 -~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l~ 638 (1091)
+..+... ..+..++|+|+++++++++ .++.|.+||+.+++. +..+... .. ......++|+|++++|+
T Consensus 213 ~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 213 LLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp EEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred eeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 6666543 4678899999999887765 578899999999887 4444322 11 11124589999999887
Q ss_pred EEEC-CCeEEEEECCCC
Q 001367 639 VIAN-ENRIKILETPES 654 (1091)
Q Consensus 639 ~~~~-dg~i~iwd~~~~ 654 (1091)
+++. ++.|.+|++...
T Consensus 289 v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 289 ISANISRELKVFTISGK 305 (331)
T ss_dssp EEETTTTEEEEEETTSC
T ss_pred EecCCCCcEEEEEecCC
Confidence 7665 569999999865
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=9e-21 Score=233.11 Aligned_cols=238 Identities=9% Similarity=-0.008 Sum_probs=166.4
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEeeCCccc-ceeEEEeccc-----------------cCeeEEEEcCCCCceEEEE
Q 001367 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT 460 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~-----------------~~v~~~~~s~d~~~~~l~s 460 (1091)
+..+.|+ |+.+++++.++ | +||+.+|+.. .. +..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4457788 66777787888 8 9999998753 32 22332 46999999999 5 3444
Q ss_pred eeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC-----CCceeeecCCCCc----
Q 001367 461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG---- 531 (1091)
Q Consensus 461 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~---- 531 (1091)
+. ++.|++||+.+++... +..+...+.+++|+ +||+.|+++ .++.|++||+.+ ++...........
T Consensus 98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred EE-CCEEEEEECCCCceEE-ccCCcccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 43 5999999999887654 44566778888885 577788884 789999999988 6655443333332
Q ss_pred ----------EEEEEEcCCCCEEEEEecC-----------------------------CCCceEEEEEecCCceeeEEEe
Q 001367 532 ----------CTRMAYSANGRRLFSCGTS-----------------------------KEGESFLVEWNESEGAIKRTYQ 572 (1091)
Q Consensus 532 ----------i~~~~~s~d~~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~ 572 (1091)
+.+++|+|||++|++++.+ ...+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 4789999999999988632 1246789999999988655443
Q ss_pred cccccccceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeEEEEe-CC--CCCCCCceEEEcc--CCCEEEEEEC
Q 001367 573 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AG--GGLPENPRICFNK--NGTLLAVIAN 642 (1091)
Q Consensus 573 ~~~~~~~~v~~v~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~-~~--~~~~~v~~v~~s~--~~~~l~~~~~ 642 (1091)
.. .+...+..++|+|||+++++++.++ .|++||+.+++....+. .. .....+..++|+| ||++++++..
T Consensus 253 ~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 253 GE-PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CS-CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CC-CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 21 1236789999999999999987665 89999999983333322 11 1111246789999 9998888888
Q ss_pred CCeEEEEECC
Q 001367 643 ENRIKILETP 652 (1091)
Q Consensus 643 dg~i~iwd~~ 652 (1091)
++.+++|.+.
T Consensus 332 ~g~~~l~~~~ 341 (706)
T 2z3z_A 332 DGWNHLYLYD 341 (706)
T ss_dssp TSSCEEEEEE
T ss_pred CCccEEEEEE
Confidence 8888777654
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=2.3e-20 Score=207.35 Aligned_cols=276 Identities=14% Similarity=0.169 Sum_probs=193.9
Q ss_pred CceEEEEEcCCCcEEEEEcC-CCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC-CEEEEE
Q 001367 346 QHTLLLVGTNVGDTGLWDVN-SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY 423 (1091)
Q Consensus 346 g~~llasg~~dg~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d-~~i~iw 423 (1091)
+++++++++.|+.|.+||+. +++..... ...|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 34566776889999999995 34322110 12367789999999999999999886 899999
Q ss_pred Eee--CCcccceeEEEeccccCeeEEEEcCCCCceEEEE-eeCCCcEEEEeC---CCCceeEEecCCCcceEEEeecccC
Q 001367 424 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVWDA---VTGSRTYSFEGHGAPVYSLCPHAKE 497 (1091)
Q Consensus 424 d~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s-~~~d~~i~iwd~---~~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1091)
++. +++ ......+..+. .+..++|+|+|+ ++++ +..++.|.+||+ .+++.+..+..+ ..+.+++|+ +
T Consensus 66 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s--~ 138 (343)
T 1ri6_A 66 RIAPDDGA-LTFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS--P 138 (343)
T ss_dssp EECTTTCC-EEEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC--T
T ss_pred EecCCCCc-eeeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC--C
Confidence 998 544 22233444443 789999999999 4544 445889999999 444555555544 357778885 4
Q ss_pred CceEEEEEe-cCCeEEEEecCC-CCcee----eec-CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC--cee-
Q 001367 498 NIHFIFSIS-VDGKIKAWLYDS-LGARV----DYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAI- 567 (1091)
Q Consensus 498 ~~~~l~s~~-~dg~i~iwd~~~-~~~~~----~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~- 567 (1091)
++.++++++ .++.|.+||+.+ ++... ... .....+..++|+|+++++++++. .++.|.+|++.. ++.
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEE
Confidence 666777766 899999999987 43321 222 23447788999999998877653 256799999853 433
Q ss_pred -eEEEeccc---ccccceEEEEEcCCCCEEEEE-eCCCeEEEEECC--C--CeeEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 568 -KRTYQGLQ---LQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN--K--VQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 568 -~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~-s~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
........ .....+..++|+|++++++++ ..++.|.+|++. + .+.+..+..+. .+..++|+|++++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLI 292 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEE
Confidence 22222111 012356789999999988865 478999999998 3 34455554433 278999999999988
Q ss_pred EEE-CCCeEEEEECC
Q 001367 639 VIA-NENRIKILETP 652 (1091)
Q Consensus 639 ~~~-~dg~i~iwd~~ 652 (1091)
+++ .++.|.+|++.
T Consensus 293 ~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 293 AAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTTCEEEEEEEE
T ss_pred EecCCCCeEEEEEEc
Confidence 888 57999999554
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1e-20 Score=211.25 Aligned_cols=274 Identities=11% Similarity=0.085 Sum_probs=212.8
Q ss_pred CCcEEEEEcCCCceEEEEEcC------CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCC
Q 001367 335 SSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~------dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 408 (1091)
..+..++|+|||++++++... ++.|.+||..+++.+.... ....+..++|+|||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~dg 100 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNTT 100 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCCC
Confidence 478899999999866555533 6789999999998775411 22457789999999
Q ss_pred CEEEEE-ECCCEEEEEEeeCCcccceeEEEecccc---------CeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 001367 409 SLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 409 ~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 478 (1091)
++++++ ..++.|.+||..+++... .+..+.. .+.+++|+|+|+.+++...+.++.|.+||+.+++.+
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence 976655 457899999999987554 3333322 278899999999522222246889999999999999
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecC----CCCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
..+..+...+..++++ +++.++++++.++.|.+||..+.+....+.. +...+..++|+|++++++++.. .+
T Consensus 178 ~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~ 252 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KA 252 (353)
T ss_dssp EEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SS
T ss_pred EEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CC
Confidence 8887666667888885 4667899999999999999998877766554 3446788999999998877753 25
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 633 (1091)
+.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|+|+
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d 324 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD 324 (353)
T ss_dssp SEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred CEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence 679999999999888777533 25689999999777765 68999999999999998887654 3689999999
Q ss_pred CCEEEEEECCC
Q 001367 634 GTLLAVIANEN 644 (1091)
Q Consensus 634 ~~~l~~~~~dg 644 (1091)
|++++++..++
T Consensus 325 g~~l~v~~~~~ 335 (353)
T 3vgz_A 325 GKTLYVSVKQK 335 (353)
T ss_dssp SCEEEEEEECC
T ss_pred CCEEEEEEccc
Confidence 99887776653
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=4.2e-21 Score=236.08 Aligned_cols=324 Identities=9% Similarity=0.081 Sum_probs=217.6
Q ss_pred eeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee-EEecCCC-----------------cceEEEeecccCCceEEEEE
Q 001367 444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHG-----------------APVYSLCPHAKENIHFIFSI 505 (1091)
Q Consensus 444 v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~~~l~s~ 505 (1091)
+..+.|+ |+ .+++++.|+ | +||+.+|+.+ ..+..|. ..|.+++|+++ + .++.+
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~-~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--G-LVVLF 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--T-EEEEE
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--C-eEEEE
Confidence 5567888 55 466677777 8 9999999873 3443333 46899999654 3 44443
Q ss_pred ecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC-----ceeeEEEecccc----
Q 001367 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-----GAIKRTYQGLQL---- 576 (1091)
Q Consensus 506 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-----~~~~~~~~~~~~---- 576 (1091)
.++.|++||+.+++... +..+...+.+++|||||++|+++. ++.|++||+.+ ++..........
T Consensus 99 -~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 45999999998765443 334455688899999999999864 45799999998 776654443330
Q ss_pred -------cccceEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEECCCCeeEEEE
Q 001367 577 -------QHNSVSVVHFDTAKDQILAAG---------------------------------DDHVIKIWDMNKVQLLTTI 616 (1091)
Q Consensus 577 -------~~~~v~~v~~~~~~~~l~~~s---------------------------------~dg~i~iwd~~~~~~~~~~ 616 (1091)
+...+.+++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 001147899999999999987 4578999999998865544
Q ss_pred eCCCCCCCCceEEEccCCCEEEEEECCC-----eEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCC
Q 001367 617 DAGGGLPENPRICFNKNGTLLAVIANEN-----RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNE 691 (1091)
Q Consensus 617 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~ 691 (1091)
....+...+..++|+|||++|++++.++ .|++||..++.....+.
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~------------------------------ 301 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF------------------------------ 301 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE------------------------------
Confidence 3322333578999999999999887665 78888876542111100
Q ss_pred CCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccccccc
Q 001367 692 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 771 (1091)
Q Consensus 692 ~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~ 771 (1091)
.....
T Consensus 302 ----------------------------------------------------------~~~~~----------------- 306 (706)
T 2z3z_A 302 ----------------------------------------------------------VETDK----------------- 306 (706)
T ss_dssp ----------------------------------------------------------EEECS-----------------
T ss_pred ----------------------------------------------------------EccCC-----------------
Confidence 00000
Q ss_pred ceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC--CCCEEEEEe-CCeEEEEEcc-CceeEEEecCCCCCeEE
Q 001367 772 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK--NDAYLFSAS-GGVISLYIVM-TFKTILTIMPPSPTATS 847 (1091)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~la~~~-dg~i~iwd~~-~~~~~~~~~~~~~~i~~ 847 (1091)
.....+..++|+| ||+++++++ ++.++||++. +++.+..+..+...+..
T Consensus 307 ---------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~ 359 (706)
T 2z3z_A 307 ---------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTN 359 (706)
T ss_dssp ---------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEE
T ss_pred ---------------------------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEe
Confidence 0011234566777 777776665 5667777765 56667777777777876
Q ss_pred -EEEcCCCCcEEEE-EeCCC----eEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCC----CcEEEEEcCCC
Q 001367 848 -LAFNPHDNNVIAI-GMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----AQIFVWDVDGW 917 (1091)
Q Consensus 848 -l~~s~~~~~~la~-g~~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D----g~i~vwd~~~~ 917 (1091)
++|+| +++.|+. +..++ .|+.||+.+++ ...+. |...+.+++|||||++++..+.+ +.|++||+.++
T Consensus 360 ~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 360 FAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred eeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 79999 6666554 44444 77777877765 34444 67779999999999998876544 56999999886
Q ss_pred c
Q 001367 918 G 918 (1091)
Q Consensus 918 ~ 918 (1091)
+
T Consensus 437 ~ 437 (706)
T 2z3z_A 437 S 437 (706)
T ss_dssp E
T ss_pred e
Confidence 5
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=2.8e-20 Score=206.68 Aligned_cols=282 Identities=9% Similarity=0.106 Sum_probs=191.6
Q ss_pred cccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC-ceEEEeecCCcccccccceeecc
Q 001367 699 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKV 777 (1091)
Q Consensus 699 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~ 777 (1091)
.+++++.++.|++|+++...... .+.. ..+...+..++|+|+|+++++++.+ +.+.+|++...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~------------ 70 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALT--LTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD------------ 70 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEE--EEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT------------
T ss_pred EEEeCCCCCeEEEEEECCCCcEE--Eeee--EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCC------------
Confidence 34455778999999986321111 1111 1245678889999999988888876 99999997521
Q ss_pred CCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEc---cCceeEEEecCCCCCeEEEEEcC
Q 001367 778 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNP 852 (1091)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~s~ 852 (1091)
++.......+. ....+..++|+|+|+++++++ ++.|.+||+ .+++....+.. ...+.+++|+|
T Consensus 71 --------~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~ 138 (343)
T 1ri6_A 71 --------DGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP 138 (343)
T ss_dssp --------TCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT
T ss_pred --------CCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC
Confidence 11111111111 122778999999999887776 688999999 44555555553 34688999999
Q ss_pred CCCcEEEEEe-CCCeEEEEeccC-cceee----eecc-ccCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCC--Cceeee
Q 001367 853 HDNNVIAIGM-DDSTILIYNARS-SEVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTC 922 (1091)
Q Consensus 853 ~~~~~la~g~-~dg~i~iwd~~~-~~~~~----~l~~-h~~~V~~l~~spdg~~las~s-~Dg~i~vwd~~~--~~~~~~ 922 (1091)
++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|+|+|++|+.++ .++.|.+|++.. ++....
T Consensus 139 -dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 139 -DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp -TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred -CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence 787777776 899999999987 65432 2222 334788999999999776554 789999999954 433222
Q ss_pred eeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcC--Cc--ceeeeeecCCccCEEEEEEeeCCCEEEEEE
Q 001367 923 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAE--EL--TCLKQWFPISSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 923 ~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~--~~--~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
..+............+..++|+|||++|+++ .++.|.+||+. ++ +.+..+. .+. .+..++|+|||++|++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TET-QPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CSS-SCCCEEECTTSSEEEEEC
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-CCC-ccceEEECCCCCEEEEec
Confidence 2233222211111246689999999988863 57899999998 33 3333322 223 388999999999988887
Q ss_pred -cCCcEEEEeC--CCCce
Q 001367 997 -VDGTLSIHEA--SNLEV 1011 (1091)
Q Consensus 997 -~dg~v~iwd~--~~~~~ 1011 (1091)
.++.|.+|++ .++..
T Consensus 296 ~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 296 QKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp TTTCEEEEEEEETTTTEE
T ss_pred CCCCeEEEEEEcCCCcee
Confidence 5799999954 46654
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=8.5e-20 Score=201.56 Aligned_cols=284 Identities=11% Similarity=0.036 Sum_probs=195.3
Q ss_pred EEecCCCe-EEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEE
Q 001367 740 TYNNGGQA-IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 818 (1091)
Q Consensus 740 ~~s~dg~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 818 (1091)
.|.+++.. +++...++.+.+||.... +....... +...+ .++|+|||+++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~----------------------~~~~~~~~----~~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTL----------------------EILNQITL----GYDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTC----------------------CEEEEEEC----CCCEE-EEEECSSSCEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccc----------------------ceeeeEEc----cCCcc-eEEEcCCCCEEEE
Confidence 45555555 556666889999886433 22222222 34445 9999999997777
Q ss_pred Ee--CCeEEEEEccCcee-EEEecCCCCCeEEEEEcCCCCcEEEEEeCCC---eEEEEeccCcceeeeeccccCCeEEEE
Q 001367 819 AS--GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSEVISKLEGHSKRVTGLV 892 (1091)
Q Consensus 819 ~~--dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg---~i~iwd~~~~~~~~~l~~h~~~V~~l~ 892 (1091)
++ ++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++ .|.+||+.+++.+..+..+ ....+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence 66 57999999999987 666665655555599999 888888655553 9999999999988877654 4578999
Q ss_pred ECCCCCEEEE-EeCCCc-EEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcCCcce
Q 001367 893 FSDALNILVS-SGGDAQ-IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC 968 (1091)
Q Consensus 893 ~spdg~~las-~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~~~~~ 968 (1091)
|+|||++|++ ...++. |.+|++................. .....++|+|||++++++ .++.|.+||+.+++.
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 9999986554 456688 99999986432211111111111 247899999999977664 468999999999887
Q ss_pred ---eeeeecCCccCEEEEEEeeCCCEEEEEE-cCCcEEEEeCCCCce--EEEeecccccCCCCcccccc-eeEEEeCCCC
Q 001367 969 ---LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEV--QCRILSTAYLRPTTSCLHVY-PHAIAAHPLK 1041 (1091)
Q Consensus 969 ---~~~~~~~h~~~v~~v~fs~dg~~l~t~~-~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~-~~~~~~~p~d 1041 (1091)
+..+. +...+..++|+|||++|++++ .++.|.+||+.+++. +..+... .... ..... ...++|+|+
T Consensus 211 ~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~spd- 283 (331)
T 3u4y_A 211 ITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG--LLID--PRPLFGANQMALNKT- 283 (331)
T ss_dssp CEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC--CCCC--CGGGTTCCCEEECTT-
T ss_pred cceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc--cccC--CCCcccccceEECCC-
Confidence 66543 246678899999999776655 477899999999887 3332211 1000 11111 134789994
Q ss_pred CCeEEE-EecCCcEEEEecCCCC
Q 001367 1042 PTQFAV-GLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 1042 ~~~l~~-g~~dg~v~~w~~~~~~ 1063 (1091)
+++|++ +..++.|.+|++....
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEecCCCCcEEEEEecCCc
Confidence 676654 4556799999997655
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=5.3e-20 Score=203.80 Aligned_cols=279 Identities=13% Similarity=0.090 Sum_probs=202.2
Q ss_pred CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE-ECCCeEEEEECCCCCeeccccccccccee
Q 001367 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRK 669 (1091)
Q Consensus 591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 669 (1091)
+++++++.++.|++||+.+++.+..+........+..++|+|++++++++ ..++.|.+||+.+++....+......
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---
Confidence 47888999999999999999999888755421126789999999876554 45789999998766443322100000
Q ss_pred eeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEE
Q 001367 670 LSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF 749 (1091)
Q Consensus 670 ~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 749 (1091)
.+..
T Consensus 79 -------------------------------------------------------------~~~~--------------- 82 (337)
T 1pby_B 79 -------------------------------------------------------------ERVK--------------- 82 (337)
T ss_dssp -------------------------------------------------------------EEEE---------------
T ss_pred -------------------------------------------------------------cccc---------------
Confidence 0000
Q ss_pred EeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEE----------
Q 001367 750 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA---------- 819 (1091)
Q Consensus 750 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~---------- 819 (1091)
.+..++++|||++++++
T Consensus 83 -----------------------------------------------------~~~~~~~s~dg~~l~~~~~~~~~~~~~ 109 (337)
T 1pby_B 83 -----------------------------------------------------SLFGAALSPDGKTLAIYESPVRLELTH 109 (337)
T ss_dssp -----------------------------------------------------CTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred -----------------------------------------------------cccceEECCCCCEEEEEeccccccccc
Confidence 12234444555444444
Q ss_pred ---eCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCC
Q 001367 820 ---SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 896 (1091)
Q Consensus 820 ---~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd 896 (1091)
.++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+.. ...+.|+||
T Consensus 110 ~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~d 184 (337)
T 1pby_B 110 FEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPD 184 (337)
T ss_dssp EEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCB
T ss_pred ccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCC
Confidence 358899999999988887764 45678899999 78877777 68899999999988777765431 112378999
Q ss_pred CCEEEEEeCCC------------------------cEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 897 LNILVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 897 g~~las~s~Dg------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
|+.|+..+.++ .|.+||+.+++.. ...... +. ..+..++|+|||+++++
T Consensus 185 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~---~~---~~~~~~~~s~dg~~l~~ 257 (337)
T 1pby_B 185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI---MD---VFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE---CS---SCEEEEEECTTSSEEEE
T ss_pred ccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC---CC---CceeeEEECCCCCEEEE
Confidence 98776544332 4689999987654 111211 11 24678999999999998
Q ss_pred EecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 953 VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 953 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
+ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|.+||+.+++.+..+.
T Consensus 258 ~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 258 A-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp E-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred e-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 8 89999999999988776543 3467899999999999999999999999999999887776
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=4.1e-20 Score=204.75 Aligned_cols=280 Identities=10% Similarity=0.048 Sum_probs=206.4
Q ss_pred EEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc-cEEEEEECCCCCEEEEE-ECCCEEEEEEee
Q 001367 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGVA-YSKHIVQLYAYH 426 (1091)
Q Consensus 349 llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~spdg~~las~-~~d~~i~iwd~~ 426 (1091)
++++++.+++|.+||+.+++.+.... .++.. .+.+++|+|||++++++ ..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 67889999999999999988765311 12222 47889999999877554 567899999999
Q ss_pred CCcccceeEEEec---cccCeeEEEEcCCCCceEEEEee------------CCCcEEEEeCCCCceeEEecCCCcceEEE
Q 001367 427 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491 (1091)
Q Consensus 427 ~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 491 (1091)
+++.+... .... |...+..++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+..+
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 88755422 1111 223678999999999 555554 579999999999988877764 4456777
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC------------------
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------------------ 553 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~------------------ 553 (1091)
+|+ +++.+++++ ++.|.+||+.+++....+..... ...+.|+|+++.++..+.....
T Consensus 141 ~~s--~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 141 AWA--RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp EEC--TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred EEC--CCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 874 466777777 68999999998876665554331 1123789999877655421110
Q ss_pred --ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 554 --ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 554 --~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
...|.+||..+++.. ...... +...+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++|+
T Consensus 216 ~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s 288 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVS 288 (337)
T ss_dssp GEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEEC
T ss_pred ccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEEC
Confidence 015799999998775 322211 23568889999999999988 7999999999999888887543 46899999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCCeeccccc
Q 001367 632 KNGTLLAVIANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 632 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
|+++++++++.++.|.+||+.+++.+..+..
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 9999999998899999999999877766553
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=1.6e-20 Score=203.53 Aligned_cols=258 Identities=14% Similarity=0.118 Sum_probs=186.7
Q ss_pred EEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeC-Cc
Q 001367 351 LVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GS 429 (1091)
Q Consensus 351 asg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~-~~ 429 (1091)
..++.|++|.+||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++
T Consensus 16 ~~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~ 74 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS 74 (297)
T ss_dssp --CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS
T ss_pred CCCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC
Confidence 345678999999999887553 345788999999999999999987 78999999998 76
Q ss_pred ccceeEEEecc-ccCeeEEEEcCCCCceEEEEee--CCCcEEEE--eCCCCceeEEecCCCcceEEEeecccCCceEEE-
Q 001367 430 DARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF- 503 (1091)
Q Consensus 430 ~~~~~~~~~~h-~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~- 503 (1091)
... ...+| ...+.+++|+|||+ ++++++ .++.+.|| +..++. ...+..+. .+..++|++ ++..++
T Consensus 75 ~~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~ 145 (297)
T 2ojh_A 75 PEK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTY 145 (297)
T ss_dssp CEE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEE
T ss_pred ceE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEE
Confidence 443 23344 46789999999999 677777 33445555 545554 44554443 478888854 666665
Q ss_pred EEecCCeEEEEecCCC-CceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC-CceeeEEEecccccccce
Q 001367 504 SISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSV 581 (1091)
Q Consensus 504 s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v 581 (1091)
+++.++.+++|+++.. .....+..+...+.+++|+|+++++++++.. ++.+.+|++. .+.....+..+. ..+
T Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~ 219 (297)
T 2ojh_A 146 CGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGD 219 (297)
T ss_dssp EEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEE
T ss_pred EECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---ccc
Confidence 7889999999997543 3444556667789999999999998877631 2346666654 344455565554 678
Q ss_pred EEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC
Q 001367 582 SVVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 582 ~~v~~~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1091)
..++|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|++++|++++.+.
T Consensus 220 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 220 WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 899999999999887765 569999999887644443222223588899999999998887653
No 147
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.5e-20 Score=231.61 Aligned_cols=377 Identities=12% Similarity=0.031 Sum_probs=242.6
Q ss_pred EEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC---------CCeEEE
Q 001367 534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI 604 (1091)
Q Consensus 534 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~---------dg~i~i 604 (1091)
+++|+|||+++++. . ++.|++||+.+++....+.++......+.+++|+|||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 67899999655543 2 556999999999987777665411124889999999999998876 789999
Q ss_pred EECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccc-cccccceeeeeccccccccccc
Q 001367 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVTGAGI 683 (1091)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 683 (1091)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.++....... ++..
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~------------------ 152 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN------------------ 152 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT------------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC------------------
Confidence 999998873111111 2478899999999999986 6899999998775432211 0000
Q ss_pred cCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecC-ceEEEeec
Q 001367 684 ANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRW 762 (1091)
Q Consensus 684 ~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~vw~~ 762 (1091)
.+..|..+ .++.-+ -.....+++|||||+.|+.++.+ +.+.+|.+
T Consensus 153 ---------------~v~~g~~~---~v~~ee----------------~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 153 ---------------KIFNGIPD---WVYEEE----------------MLATKYALWWSPNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp ---------------TEEESSCC---HHHHHH----------------TTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred ---------------CeEccccc---ceeeee----------------cccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence 00000000 000000 00123478999999999988765 44555543
Q ss_pred CCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeE-------
Q 001367 763 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI------- 835 (1091)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~------- 835 (1091)
.... . .+...+..+.+...|.. .....|++||+.+++..
T Consensus 199 ~~~~--------------------~-----------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~~ 244 (719)
T 1z68_A 199 SYYG--------------------D-----------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVPV 244 (719)
T ss_dssp EECC--------------------S-----------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECCC
T ss_pred eccC--------------------C-----------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEccC
Confidence 2110 0 12223445555544431 11247999999988753
Q ss_pred -EEecCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEe----ccCcceeeee----ccccCCeE-----EEEECCCC
Q 001367 836 -LTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDAL 897 (1091)
Q Consensus 836 -~~~~~~~~~i~~l~~s~~~~~~la~g~~d----g~i~iwd----~~~~~~~~~l----~~h~~~V~-----~l~~spdg 897 (1091)
..+..+...+..++||| |++++++.... ..|.+|| +.++++...+ .+|.+.+. .++|||||
T Consensus 245 ~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 245 PAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp CHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 12335777899999999 68887774432 3588999 8888876666 46777776 89999999
Q ss_pred CEEEE--EeCCC--cEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-Eec-----CeEEEEEcCC--
Q 001367 898 NILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE-- 965 (1091)
Q Consensus 898 ~~las--~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d-----~~i~vwd~~~-- 965 (1091)
+.|+. ...+| .|.+||+.+++. .. +..+.. .+..+.++ +++.|+. +.+ +..++|.+..
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~~~~~~---~~---lt~~~~---~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~ 393 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKDTVENA---IQ---ITSGKW---EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS 393 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESSCSTTC---EE---CSCSSS---CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred CeEEEEEEccCCceEEEEEECCCCce---Ee---cccCce---EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence 96654 44555 567777766541 11 112211 46777788 8888877 443 6788887653
Q ss_pred cce-eeee---ecCCccCEEEEEEeeCCCEEEEE-EcC--CcEEEEeCCCCceEEEee
Q 001367 966 LTC-LKQW---FPISSVPISQATFSCDCRMVFTS-FVD--GTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 966 ~~~-~~~~---~~~h~~~v~~v~fs~dg~~l~t~-~~d--g~v~iwd~~~~~~~~~~~ 1016 (1091)
+.. ...+ +.+|...+..+.|||||++++.. +.+ ..+.+||+.+++....+.
T Consensus 394 g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 394 YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 421 1221 12256678899999999877744 333 468899999888655444
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=6.3e-19 Score=196.60 Aligned_cols=261 Identities=13% Similarity=0.121 Sum_probs=203.9
Q ss_pred CccEEEEEECCCCCEEEEEEC-------CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEE
Q 001367 396 GVSVNRVVWSPDGSLLGVAYS-------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 468 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~-------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~ 468 (1091)
...+..++|+|+|++|++++. ++.|.+||..+++.... +. ....+..++|+|+|+. ++++...++.|.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~ 114 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVT 114 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEE
Confidence 357889999999999988874 56899999999875543 32 2345788999999995 455666689999
Q ss_pred EEeCCCCceeEEecCCCcc---------eEEEeecccCCceEEEEEe--cCCeEEEEecCCCCceeeecCCCCcEEEEEE
Q 001367 469 VWDAVTGSRTYSFEGHGAP---------VYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 537 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 537 (1091)
+||..+++.+..+..+... +..+++++ ++.++++++ .++.|.+||..+.+....+......+.+++|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 9999999988888654432 67788854 555665555 5789999999988887777756666888999
Q ss_pred cCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccc-cccceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeEEE
Q 001367 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 538 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~ 615 (1091)
+|+|++++++.. ++.|.+||..+++....+..... +...+..++|+|+++++++++. ++.|.+||..+++.+..
T Consensus 193 s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 193 DSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp ETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 999999988864 56799999999998887765221 2356788999999998887665 59999999999999888
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEE-CCCeEEEEECCCCCeecccccccccceeeee
Q 001367 616 IDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1091)
+..... ..++|+|++++++++. .++.|.+||..+++.+..+... .....++|
T Consensus 269 ~~~~~~----~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~ 321 (353)
T 3vgz_A 269 VAAPES----LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLAL 321 (353)
T ss_dssp EECSSC----CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEE
T ss_pred EEcCCC----ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEE
Confidence 876432 6799999999776666 6899999999998777666543 35567777
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=228.00 Aligned_cols=279 Identities=14% Similarity=0.079 Sum_probs=196.8
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc---cEEEEEECCCCCEEEEE
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~las~ 414 (1091)
..++|+|||+ +++++ .|++|++||+.+|+.... +.+|.. .|.+++|||||++||++
T Consensus 19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence 3789999996 65655 589999999999986542 333333 48999999999999998
Q ss_pred EC---------CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe-cCC
Q 001367 415 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH 484 (1091)
Q Consensus 415 ~~---------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~ 484 (1091)
+. ++.|++||+.+++.+... .+ ...+..++|||||+ .|+.+. ++.|++||+.+++..+.. .++
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence 76 689999999998652100 12 25688999999999 566665 789999999988765432 233
Q ss_pred Ccce-----------------EEEeecccCCceEEEEEecCC----------------------------------eEEE
Q 001367 485 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA 513 (1091)
Q Consensus 485 ~~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~i 513 (1091)
...| .+++| ++||++|++++.|. .|++
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 2222 36777 56788999887652 7889
Q ss_pred EecCCCCce--ee------ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEe----cCCceeeEEE----eccccc
Q 001367 514 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ 577 (1091)
Q Consensus 514 wd~~~~~~~--~~------~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~ 577 (1091)
||+.+++.. .. +..+...+..++|+||++.+++..........|++|| ..+++....+ .++.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~-- 306 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT-- 306 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence 999876542 11 2346667899999999877776544334456799999 8888766555 2333
Q ss_pred ccceE-----EEEEcCCCCEEEE--EeCCC--eEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC-----
Q 001367 578 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----- 643 (1091)
Q Consensus 578 ~~~v~-----~v~~~~~~~~l~~--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----- 643 (1091)
..+. .+.|+|||+.++. ...+| .|++||+.+++. ..+..+. ..+..+.++ +++.++..+.+
T Consensus 307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~--~~v~~~~~~-d~~~i~~~~~~~~~~~ 381 (719)
T 1z68_A 307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGK--WEAINIFRV-TQDSLFYSSNEFEEYP 381 (719)
T ss_dssp -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSS--SCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCc--eEEEEEEEE-eCCEEEEEEecCCCCC
Confidence 4454 7889999997655 33455 577788877763 3333222 245667777 88887777765
Q ss_pred CeEEEEECCC
Q 001367 644 NRIKILETPE 653 (1091)
Q Consensus 644 g~i~iwd~~~ 653 (1091)
+..++|.+..
T Consensus 382 ~~~~l~~~~~ 391 (719)
T 1z68_A 382 GRRNIYRISI 391 (719)
T ss_dssp TCBEEEEEEC
T ss_pred ceEEEEEEeC
Confidence 7788887653
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=5.3e-20 Score=220.31 Aligned_cols=273 Identities=12% Similarity=0.079 Sum_probs=197.8
Q ss_pred CCCcEEEEEcCCCceEEEEEcC-CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC-ccEEEEEECCCCCEE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLL 411 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~-dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~l 411 (1091)
..+|++++|||||++| |+++. ||++.||++.+++... +..|. ..|.+++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~l-a~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKL-LVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTEE-EEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCeE-EEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 4489999999999965 55554 9999999997665443 33454 68999999999 777
Q ss_pred EEEEC---CCEEEEEEeeC--CcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc
Q 001367 412 GVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1091)
Q Consensus 412 as~~~---d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1091)
++++. +....+|.+.. ..... .+..+ ..+...+|+|||+.+++++++.++ +.+||+.+++.......+.
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence 77765 45567776654 22112 22222 234467999999875666666555 5599999887655544333
Q ss_pred ceEEEeecccCCceEEEEEecC----CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 487 PVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
.+++|+ +||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||+
T Consensus 153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 666774 577899988877 78999999877655 55667778899999999999995443 33458999999
Q ss_pred CCceeeEEEecccccccceEEEE--------EcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~--------~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 634 (1091)
.+++.. .+.++. ..+..++ |+|||..+++++.++++++|++ ++.... .. ..+..++|+ ++
T Consensus 226 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~--~~v~~~~~s-dg 293 (582)
T 3o4h_A 226 RDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQ--GNHGRVVLW-RG 293 (582)
T ss_dssp TTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CS--SEEEEEEEE-TT
T ss_pred CCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CC--CceEEEEec-CC
Confidence 998877 655554 4455555 9999988888999999999999 665441 11 357789999 99
Q ss_pred CEEEEEECCCe---EEEEECCC
Q 001367 635 TLLAVIANENR---IKILETPE 653 (1091)
Q Consensus 635 ~~l~~~~~dg~---i~iwd~~~ 653 (1091)
+++++++.+.+ +++|+..+
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEEcCCCCCCeEEEEcCCC
Confidence 99988887644 66666543
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=2.5e-19 Score=194.08 Aligned_cols=243 Identities=12% Similarity=0.064 Sum_probs=180.1
Q ss_pred eeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCC-CCceeeeceeEEeccccccceeeeeecCC-CccEEEEE
Q 001367 326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVV 403 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~ 403 (1091)
....+..|...|.+++|||||++ +++++ ++.|.+||+.+ ++.... ..+| ...|.+++
T Consensus 33 ~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 33 KMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGFATICNNDHG 91 (297)
T ss_dssp EEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEEC-------------------CCTTCCCBCSCCE
T ss_pred ceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceEe-------------------ccccccccccceE
Confidence 34456678889999999999995 56665 78999999998 765532 3334 47889999
Q ss_pred ECCCCCEEEEEE--CCCEEEEEEee--CCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC-CCcee
Q 001367 404 WSPDGSLLGVAY--SKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRT 478 (1091)
Q Consensus 404 ~spdg~~las~~--~d~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~ 478 (1091)
|+|||++|++++ .++...||.+. ++. .. .+..+ ..+..++|+||++. ++++++.++.++||++. .+...
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCCE
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCCcc
Confidence 999999999998 33455666554 433 22 33333 35899999999994 34478889999999863 23345
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEe-cCCeEEEEecC-CCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC----
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE---- 552 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~---- 552 (1091)
..+..+...+.+++|++ ++.+++.++ .++.+++|+++ .......+..+...+.+++|+|+|++|++++.++.
T Consensus 166 ~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp EECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred eEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 66777888899999954 666676655 58999999987 45556666667778999999999999998876422
Q ss_pred ---CceEEEEEecCCceeeEEE--ecccccccceEEEEEcCCCCEEEEEeCCC
Q 001367 553 ---GESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDH 600 (1091)
Q Consensus 553 ---~~~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~s~dg 600 (1091)
....|++||+.+++..... .++. ..+..++|+|++++|++++.+.
T Consensus 244 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CSSEEEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred cccCceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence 2467999999988664433 3444 6788899999999998876543
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=1e-18 Score=194.17 Aligned_cols=277 Identities=12% Similarity=0.097 Sum_probs=182.5
Q ss_pred ccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeec---CceEEEeecCCcccccccceeeccCCccc
Q 001367 706 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS---NGVHLMWRWPRNDLTLSTEATTKVPPRLY 782 (1091)
Q Consensus 706 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 782 (1091)
++.+.+|.++.... ....+.. ..+...+..++|+|||+ +++++. ++.+.+|++.......
T Consensus 15 ~~~i~v~~~d~~tg-~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~------------- 77 (347)
T 3hfq_A 15 SQGIYQGTLDTTAK-TLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHK------------- 77 (347)
T ss_dssp CCEEEEEEEETTTT-EEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEE-------------
T ss_pred CCCEEEEEEcCCCC-eEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEE-------------
Confidence 45677887764221 1111111 12345667899999999 666655 5899999874322100
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEcc---CceeEEEecCC---------CCCeEEE
Q 001367 783 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM---TFKTILTIMPP---------SPTATSL 848 (1091)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~---~~~~~~~~~~~---------~~~i~~l 848 (1091)
+.. +. .+...+..++|+|||++|++++ ++.|.+|++. +.+.+..+... ...+.++
T Consensus 78 -------~~~--~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~ 146 (347)
T 3hfq_A 78 -------LNT--VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYT 146 (347)
T ss_dssp -------EEE--EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEE
T ss_pred -------eee--ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEE
Confidence 000 00 1455778999999999988887 5899999996 23333333221 2348899
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecc-Cccee--eeeccc-cCCeEEEEECCCCCEEEE-EeCCCcEEEEEcCC--Cceee
Q 001367 849 AFNPHDNNVIAIGMDDSTILIYNAR-SSEVI--SKLEGH-SKRVTGLVFSDALNILVS-SGGDAQIFVWDVDG--WGIQT 921 (1091)
Q Consensus 849 ~~s~~~~~~la~g~~dg~i~iwd~~-~~~~~--~~l~~h-~~~V~~l~~spdg~~las-~s~Dg~i~vwd~~~--~~~~~ 921 (1091)
+|+| +++++++...++.|++|++. +++.. ..+..+ ...+..++|+|||++|++ ...++.|.+|+++. ++...
T Consensus 147 ~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 147 DLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 9999 77777777778999999998 55432 222222 236788999999996665 45688999999885 44322
Q ss_pred eeeeeccCCCcCCCCCceEEEEcCCCCEEEE-E-ecCeEEEEEcCCc---ceeeeeecCCccCEEEEEEeeCCCEEEEEE
Q 001367 922 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEEL---TCLKQWFPISSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 922 ~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~-~d~~i~vwd~~~~---~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
...+............+..++|+|||++|++ . .++.|.+|++... +.+.. ...+...+..++|+|||++|++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ-ISTEGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE-EECSSSCCCEEEECTTSSEEEEEE
T ss_pred eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE-EecCCCCcCeEEECCCCCEEEEEE
Confidence 2223322221111124788999999998865 3 4789999999732 33333 333455688999999999988887
Q ss_pred cC-CcEEEE--eCCCCceE
Q 001367 997 VD-GTLSIH--EASNLEVQ 1012 (1091)
Q Consensus 997 ~d-g~v~iw--d~~~~~~~ 1012 (1091)
.+ +.|.+| |..+|++.
T Consensus 305 ~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 305 QNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TTTTEEEEEEECTTTCCEE
T ss_pred cCCCcEEEEEEeCCCCeEE
Confidence 65 899999 55667665
No 153
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=7e-19 Score=216.23 Aligned_cols=363 Identities=11% Similarity=0.066 Sum_probs=226.3
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCc-----cEEEEEECCCCC
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS 409 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 409 (1091)
.....++|+|||+ +++++ ||+|++||+.+|+.... +.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence 3567899999997 66776 89999999999986532 444442 234589999999
Q ss_pred EEEEEECC---------CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 410 LLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 410 ~las~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
+|++++.+ +.+.+||+.+++... +..|...+..++|||||+ .|+.+. |+.|++||+.+++..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence 99999876 566799999986443 557788899999999999 566664 78999999988875532
Q ss_pred -ecCCCcce-----------------EEEeecccCCceEEEEEecCCe-EEEEecCCCCceeeecCCCCcEEEEEEcCCC
Q 001367 481 -FEGHGAPV-----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANG 541 (1091)
Q Consensus 481 -~~~~~~~v-----------------~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~ 541 (1091)
..++...+ ..+.| ++||+.|+.++.|.. +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 22332222 23566 668888988876655 8888764221110 123356677777766
Q ss_pred CEEEEEecCCCCceEEEEEecCC---ce--eeEEEeccc---ccccceEEEEEcCCCCEEEEEe----CCCeEEEEECCC
Q 001367 542 RRLFSCGTSKEGESFLVEWNESE---GA--IKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNK 609 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~s----~dg~i~iwd~~~ 609 (1091)
.. .....|++||+.+ ++ ....+.... .+...+..++|+|||+.++... .+..|++||+.+
T Consensus 223 ~~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 223 AV--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp SC--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred Cc--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 43 1244699999998 73 222332200 1236789999999999766643 234799999998
Q ss_pred Ce----eE--EEE--eCCCCCCC---CceEEEccCCCEEE-EEEC-C--CeEEEEECCCCCeecccccccccceeeeecc
Q 001367 610 VQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESNSVDAAGVLSDNLRKLSVNP 674 (1091)
Q Consensus 610 ~~----~~--~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 674 (1091)
++ +. ..+ ..+..... ...++|+|||+.++ ..+. + ..|++|+..++.......+ ...+..+..
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~~~-- 371 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWEVIGIEA-- 371 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSCEEEEEE--
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC-CEEEEEEEE--
Confidence 87 11 111 22222111 23789999999887 6654 3 4688889887654433333 333333221
Q ss_pred ccccccccccCCcccCCCCCCCCCcc-ccccc----ccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEE
Q 001367 675 ISTVTGAGIANGSVSNEDPKEDVKPE-ISVEA----ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF 749 (1091)
Q Consensus 675 ~~~~~~~~~~~g~~~~~~~s~~~~~l-~s~~~----d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 749 (1091)
++++.+ +++.. .+...+|.+..........+.............+.|+|+|++++
T Consensus 372 --------------------~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~ 431 (740)
T 4a5s_A 372 --------------------LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ 431 (740)
T ss_dssp --------------------ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred --------------------EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEE
Confidence 223333 23332 23456666543322111111111011345678899999999876
Q ss_pred EeecC---ceEEEeec
Q 001367 750 ALASN---GVHLMWRW 762 (1091)
Q Consensus 750 ~~~~d---g~i~vw~~ 762 (1091)
....+ ..+.+++.
T Consensus 432 ~~~s~~~~p~~~l~~~ 447 (740)
T 4a5s_A 432 LRCSGPGLPLYTLHSS 447 (740)
T ss_dssp EEECSBSSCEEEEEET
T ss_pred EEeCCCCCCEEEEEEC
Confidence 65543 24455543
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1.5e-17 Score=185.99 Aligned_cols=299 Identities=14% Similarity=0.136 Sum_probs=197.2
Q ss_pred cCCCceEEEEEc----CCCcEEEEEc--CCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC
Q 001367 343 HPVQHTLLLVGT----NVGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 416 (1091)
Q Consensus 343 spdg~~llasg~----~dg~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 416 (1091)
.+... .+.+|+ .++.|.+|++ .+|+..... .. +...+..++|+|||++|++++.
T Consensus 10 ~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~-----------------~~--~~~~p~~l~~spdg~~l~~~~~ 69 (361)
T 3scy_A 10 TDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS-----------------DA--EVANPSYLIPSADGKFVYSVNE 69 (361)
T ss_dssp GGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE-----------------EE--ECSCCCSEEECTTSSEEEEEEC
T ss_pred CCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee-----------------cc--cCCCCceEEECCCCCEEEEEEc
Confidence 34443 455664 3568999876 455543210 02 5677888999999999999987
Q ss_pred C----CEEEEEEeeCC-cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe------cC--
Q 001367 417 K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF------EG-- 483 (1091)
Q Consensus 417 d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------~~-- 483 (1091)
+ +.|.+|++... ..+........+......+++ +++. ++++...++.|.+|++.....+..+ .+
T Consensus 70 ~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 146 (361)
T 3scy_A 70 FSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG 146 (361)
T ss_dssp CSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred cCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence 5 79999999873 233333344445566778888 7773 3444446889999999754433211 11
Q ss_pred ------CCcceEEEeecccCCceEEEEE-ecCCeEEEEecCCCCc------e-------eeecCCCCcEEEEEEcCCCCE
Q 001367 484 ------HGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGA------R-------VDYDAPGLGCTRMAYSANGRR 543 (1091)
Q Consensus 484 ------~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~~~~s~d~~~ 543 (1091)
+...+.+++|+ +++++++++ ..++.|.+|+++.... . ............++|+|||++
T Consensus 147 ~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~ 224 (361)
T 3scy_A 147 PDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF 224 (361)
T ss_dssp SCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred CCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE
Confidence 12234678885 567655554 4589999999886542 1 222334456789999999998
Q ss_pred EEEEecCCCCceEEEEEecCCcee--eEEEecccccccceEEEEEcCCCCEEEEEeC--CCeEEEEECC--CCe--eEEE
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMN--KVQ--LLTT 615 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~--dg~i~iwd~~--~~~--~~~~ 615 (1091)
++++.. .++.|.+|++.+++. +..+.....+......++|+|||++++++.. ++.|.+|++. +++ .+..
T Consensus 225 l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 225 AYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE
T ss_pred EEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE
Confidence 887763 256799999987754 2333332222345689999999999987665 4899999985 454 3444
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEE-CCCeEEEEEC--CCCCeeccc-ccccccceeeee
Q 001367 616 IDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILET--PESNSVDAA-GVLSDNLRKLSV 672 (1091)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~-~~~~~~v~~~~~ 672 (1091)
+.. + ..+..++|+|+|++|++++ .++.|.+|++ .+++..... ..+...+.|+.|
T Consensus 302 ~~~-g--~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 302 QLT-G--IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEC-S--SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred ecC-C--CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 444 2 2568999999999998888 5789999655 455544332 223345666665
No 155
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=7.3e-19 Score=198.97 Aligned_cols=306 Identities=10% Similarity=0.017 Sum_probs=201.4
Q ss_pred CCCchheeeecccCCCCcEE-----EEEcCCCceEEEEEcCCC--cEEEEEcCCCCceeeeceeEEeccccccceeeeee
Q 001367 320 SDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 392 (1091)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~-----v~fspdg~~llasg~~dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (1091)
+.........|..|...+.. .+|||||++|++++..+| .|.+||+.+++.... .
T Consensus 16 ~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t 76 (388)
T 3pe7_A 16 DASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------T 76 (388)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------C
T ss_pred cCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------e
Confidence 33445566777777766665 899999997655555467 488889988876542 3
Q ss_pred cCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEE--EcCCCCceEEEE----------
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVIT---------- 460 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~~~l~s---------- 460 (1091)
.++...+..++|||||++|++++.++.|++||+.+++... ....+...+.... +++|++ +++.
T Consensus 77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~ 151 (388)
T 3pe7_A 77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVP 151 (388)
T ss_dssp CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCC
T ss_pred eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccccc
Confidence 4455555577899999999999999999999999986443 2334444444343 489998 4543
Q ss_pred ------------eeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC------CeEEEEecCCCCce
Q 001367 461 ------------CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGAR 522 (1091)
Q Consensus 461 ------------~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~ 522 (1091)
.+.+..|.+||+.+++.. .+..+...+..++|+|. ++..|+....+ ..|.++|.......
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (388)
T 3pe7_A 152 LTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMR 229 (388)
T ss_dssp CCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCE
T ss_pred ccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceE
Confidence 224578999999998654 44456667888888541 66777776653 36777777665444
Q ss_pred eeecCCC-CcEEEEEEcCCCCEEEEEecC-CCCceEEEEEecCCceeeEE--EecccccccceEEEEEcCCCCEEEEE--
Q 001367 523 VDYDAPG-LGCTRMAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA-- 596 (1091)
Q Consensus 523 ~~~~~~~-~~i~~~~~s~d~~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~-- 596 (1091)
....... ..+..++|+|||+.|+..+.. +.....|++||+.+++.... +.++...........|+|||+.++..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 3333332 357788999999988765543 22234699999999875332 22211000001123689999988764
Q ss_pred -------eCCCeEEEEECCCCeeEEEEeCCCCCC--------CCceEEEccCCCEEEEEEC-CCeEEEEEC
Q 001367 597 -------GDDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILET 651 (1091)
Q Consensus 597 -------s~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iwd~ 651 (1091)
..+..|++||+.+++............ .+..++|+|||+.|+..+. +|...+|.+
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 456789999999987654443322110 3678899999998887765 566666644
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=1.4e-17 Score=184.97 Aligned_cols=251 Identities=11% Similarity=0.148 Sum_probs=173.2
Q ss_pred CCccEEEEEECCCCCEEEEEEC---CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCCcEEEE
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVW 470 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~~i~iw 470 (1091)
+...+..++|+|||+ |++++. ++.|.+|++.+++. +....+..+...+..++|+|||+ +|++++ .++.|.+|
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEVM 113 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEEE
Confidence 456778899999999 555543 68999999987652 33334456777899999999999 566666 78999999
Q ss_pred eCCC-Cc--eeEEecC---------CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee---eec-CCCCcEEE
Q 001367 471 DAVT-GS--RTYSFEG---------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYD-APGLGCTR 534 (1091)
Q Consensus 471 d~~~-~~--~~~~~~~---------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~~i~~ 534 (1091)
|+.. +. .+..+.. +...+.+++|++ +++++++...++.|.+|++....... ... ........
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 9863 32 2333321 122477788855 55677777778999999998433222 112 23336778
Q ss_pred EEEcCCCCEEEEEecCCCCceEEEEEecCC--ceee--EEEecccc---cccceEEEEEcCCCCEEEE-EeCCCeEEEEE
Q 001367 535 MAYSANGRRLFSCGTSKEGESFLVEWNESE--GAIK--RTYQGLQL---QHNSVSVVHFDTAKDQILA-AGDDHVIKIWD 606 (1091)
Q Consensus 535 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~~--~~~~~~~~---~~~~v~~v~~~~~~~~l~~-~s~dg~i~iwd 606 (1091)
++|+|||++++++.. .++.+.+|++.. ++.. ..+..... ....+..++|+|+|+++++ ...++.|.+|+
T Consensus 192 ~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred EEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 999999998877653 256788998774 5432 22222210 0135888999999998855 56789999999
Q ss_pred CCC---CeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC-CeEEEEEC--CCCCe
Q 001367 607 MNK---VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKILET--PESNS 656 (1091)
Q Consensus 607 ~~~---~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~--~~~~~ 656 (1091)
+.. .+.+..+..++. .+..++|+|||++|+++..+ +.|.+|++ .+++.
T Consensus 269 ~~~~g~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 269 VTADGHLTLIQQISTEGD--FPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp ECGGGCEEEEEEEECSSS--CCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred ECCCCcEEEeEEEecCCC--CcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 973 245555554332 46899999999999888764 89999954 44543
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=4.7e-17 Score=181.81 Aligned_cols=310 Identities=12% Similarity=0.122 Sum_probs=191.8
Q ss_pred CCCCEEEEEecCCCCceEEEEEec--CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC----CeEEEEECCC--C
Q 001367 539 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V 610 (1091)
Q Consensus 539 ~d~~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d----g~i~iwd~~~--~ 610 (1091)
+...++++++.....++.|++|.+ .+++.......+ ...+..++|+|++++|++++.+ +.|.+|++.. +
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~---~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE---VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE---CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc---CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence 344456666544334556777755 556554333322 3677889999999999998875 7999998765 5
Q ss_pred eeE--EEEeCCCCCCCCceEEEccCCCEEEEEE-CCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCc
Q 001367 611 QLL--TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687 (1091)
Q Consensus 611 ~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~ 687 (1091)
+.. .....+.. ....+++ ++++++++. .++.+.+|++.....+......
T Consensus 88 ~~~~~~~~~~~~~--~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~------------------------ 139 (361)
T 3scy_A 88 TLHLLNTQKTMGA--DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV------------------------ 139 (361)
T ss_dssp EEEEEEEEECSSS--CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE------------------------
T ss_pred cEEEeeEeccCCC--CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee------------------------
Confidence 433 33332222 3456666 788777776 5789999998643222111000
Q ss_pred ccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccc
Q 001367 688 VSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 767 (1091)
Q Consensus 688 ~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~ 767 (1091)
+. ..+. +
T Consensus 140 ---------------------------------------------------~~--~~g~--------~------------ 146 (361)
T 3scy_A 140 ---------------------------------------------------IE--FKGS--------G------------ 146 (361)
T ss_dssp ---------------------------------------------------EE--CCCC--------C------------
T ss_pred ---------------------------------------------------EE--ccCC--------C------------
Confidence 00 0000 0
Q ss_pred ccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCce-------e----
Q 001367 768 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-------T---- 834 (1091)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~-------~---- 834 (1091)
+. +...+...+.+++|+|||+++++++ ++.|.+|++.... .
T Consensus 147 ----------------~~----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~ 200 (361)
T 3scy_A 147 ----------------PD----------KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG 200 (361)
T ss_dssp ----------------SC----------TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred ----------------CC----------ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence 00 0001233456677777777666554 4678888776432 1
Q ss_pred --EEEecCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEeccCcce--eeee---ccccCCeEEEEECCCCCEEEEEeCC
Q 001367 835 --ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGGD 906 (1091)
Q Consensus 835 --~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~i~iwd~~~~~~--~~~l---~~h~~~V~~l~~spdg~~las~s~D 906 (1091)
......+......++|+| +++++++++ .++.|.+|++.+++. +..+ ..+.....+++|+|||++|+++..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 201 TPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred cccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 111223455678999999 888777666 689999999987754 2222 3344567899999999998766654
Q ss_pred --CcEEEEEcC--CCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEEEE--cCCcceeeeeecCCcc
Q 001367 907 --AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYE--AEELTCLKQWFPISSV 978 (1091)
Q Consensus 907 --g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd--~~~~~~~~~~~~~h~~ 978 (1091)
+.|.+|+++ ++.......+.. + ..+..++|+|||++|+++ .++.|.+|+ ..+++........+..
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~ 352 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVD 352 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECS
T ss_pred CCCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCC
Confidence 899999996 344322222222 2 246799999999999885 467899965 4566654432223456
Q ss_pred CEEEEEEe
Q 001367 979 PISQATFS 986 (1091)
Q Consensus 979 ~v~~v~fs 986 (1091)
.+.++.|.
T Consensus 353 ~p~~v~~~ 360 (361)
T 3scy_A 353 KPVCLKFV 360 (361)
T ss_dssp SEEEEEEE
T ss_pred CCeEEEEc
Confidence 78888886
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=6.1e-19 Score=200.56 Aligned_cols=268 Identities=13% Similarity=0.104 Sum_probs=182.5
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEEccCcee----------EEE-----ecCCCCCeEEEEEcCCCCcEEE----EE
Q 001367 801 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT----------ILT-----IMPPSPTATSLAFNPHDNNVIA----IG 861 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~----------~~~-----~~~~~~~i~~l~~s~~~~~~la----~g 861 (1091)
...+..+++++++.++++++.+.+++|+...... +.. ...+...|.+++|+| ++++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence 4467899999999999999865699988642211 111 112456799999999 888998 78
Q ss_pred eCCCeEEEEeccCc--------ce---eeeeccccCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeccC
Q 001367 862 MDDSTILIYNARSS--------EV---ISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 929 (1091)
Q Consensus 862 ~~dg~i~iwd~~~~--------~~---~~~l~~h~~~V~~l~~spd-g~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 929 (1091)
+.|+.|++||+.++ +. +..+.+|.+.|++++|+|+ +++|++++.||+|++||+.++.. .....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-----~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-----VCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----EEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----eeecc
Confidence 89999999999765 21 4566789999999999998 89999999999999999998632 22222
Q ss_pred CCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCcceeeeeec------CCccCEEEEEEeeCCCEEEEE-EcCCc-
Q 001367 930 GVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTS-FVDGT- 1000 (1091)
Q Consensus 930 ~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~------~h~~~v~~v~fs~dg~~l~t~-~~dg~- 1000 (1091)
+|.. .+.+++|+|+|++|++ +.|+.|++||.+ ++....+.. .|...|.+++|++++.++++. ..||.
T Consensus 190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 3443 7999999999999999 578999999998 444433211 234489999999999887643 34433
Q ss_pred -----EEEEeCCCCce-----EEEeecccccCCCCcccccceeEEEeCCCCCCe-EEEEecCCcEEEEecCCCCCCcccC
Q 001367 1001 -----LSIHEASNLEV-----QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ-FAVGLTNGEVYVIEPNEPGDTWAVL 1069 (1091)
Q Consensus 1001 -----v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~-l~~g~~dg~v~~w~~~~~~~~~~~~ 1069 (1091)
+++|++..... ...+....+ +.+ ..+.....+.+.++ .++ +++.+..+.|.+......+..|...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~-~~~--~~r~~~~~~~~l~d-w~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCY-GSC--TERQHHYYLSYIEE-WDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSC-CCC--SSSCCCEEEEEEGG-GTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCC-CCC--CCcCcceeeehhcc-CCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 89999986531 111111111 000 11111223444453 445 4555556679999877666668666
Q ss_pred CCCccccCCCCcC
Q 001367 1070 PPDEIVGDQPTST 1082 (1091)
Q Consensus 1070 ~~~~~~~~~~~~~ 1082 (1091)
...|...++-+-.
T Consensus 342 ~~~d~~ra~lP~~ 354 (434)
T 2oit_A 342 LLEDSSRAELPVT 354 (434)
T ss_dssp EECGGGCCBCCBC
T ss_pred eccccccccccCC
Confidence 6555444443333
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=2.3e-18 Score=195.76 Aligned_cols=263 Identities=12% Similarity=0.051 Sum_probs=176.6
Q ss_pred CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE-
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG- 412 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 412 (1091)
...+..+++++++. ++++|+.++ ++||+...-....... .+.. ............|...|.+++|+|+|++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34689999999998 567787777 9998864211100000 0000 000000011224677899999999999999
Q ss_pred ---EEECCCEEEEEEeeCC--------cccceeEEEeccccCeeEEEEcCC-CCceEEEEeeCCCcEEEEeCCCCceeEE
Q 001367 413 ---VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 413 ---s~~~d~~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 480 (1091)
+|+.|++|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||+.++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7788999999999875 222233456689999999999998 56 899999999999999999987777
Q ss_pred ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC-------CCcEEEEEEcCCCCEEEEEecCC--
Q 001367 481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK-- 551 (1091)
Q Consensus 481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~~-- 551 (1091)
..+|...|.+++|++ ++.+|++|+.||.|++||.+ +.....+..+ ...+.+++|++++.++++.....
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 778999999999965 67899999999999999998 4444433322 23789999999988886654321
Q ss_pred -CCceEEEEEecCCce-----eeEEEecc----cccccceEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 001367 552 -EGESFLVEWNESEGA-----IKRTYQGL----QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDM 607 (1091)
Q Consensus 552 -~~~~~i~iwd~~~~~-----~~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~ 607 (1091)
+....+++|++.... ....+... ...+.+...+.+-++.+.+++++ ..+.|.+...
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 112358999987542 11222111 01112233344447777777655 3444555553
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=4.3e-18 Score=189.45 Aligned_cols=282 Identities=11% Similarity=0.061 Sum_probs=193.3
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCC-CccEEEEEECCCCCEEEEE-E
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSLLGVA-Y 415 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~las~-~ 415 (1091)
+.++++++++ ++++++.+++|.+||+.+++.+.. +..+ ...+..++|+|||++++++ .
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~ 62 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNN 62 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEET
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeC
Confidence 3567888886 778999999999999999987653 2212 2257789999999976554 5
Q ss_pred CCCEEEEEEeeCCcccceeEEEe-cc-----ccCeeEEEEcCCCCceEEEEeeCC------------CcEEEEeCCCCce
Q 001367 416 SKHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSR 477 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~-~h-----~~~v~~~~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~ 477 (1091)
.++.|.+||+.+++... .+. .+ ...+..++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 63 ~~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 137 (349)
T 1jmx_B 63 HYGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 137 (349)
T ss_dssp TTTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred CCCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccc
Confidence 68899999999886543 233 22 23478999999999 66666654 8999999998543
Q ss_pred ---eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCC------------------------
Q 001367 478 ---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------------------------ 530 (1091)
Q Consensus 478 ---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------ 530 (1091)
+..+. +...+.+++|++ ++. +++++ +.|.+||..+++....+.....
T Consensus 138 ~~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (349)
T 1jmx_B 138 AKPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 211 (349)
T ss_dssp BCCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred cceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence 34443 333577788854 666 55543 4499999988776665543310
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEE-EecccccccceEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 001367 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMN 608 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~v~~~~-~~~~l~~~s~dg~i~iwd~~ 608 (1091)
....+++++++........ ....+..+|..+++.... +.. ....+..++|+| ++++++++ ++.|.+||+.
T Consensus 212 ~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~ 283 (349)
T 1jmx_B 212 MLYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFAD---LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLK 283 (349)
T ss_dssp EEEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEE---CSSCEEEEEECSSCTTEEEEE--ESEEEEEETT
T ss_pred eeeeeeecCCCcCCccccc---cceeEEEEeccCCcEEeccccc---CCCcceeeEecCCCCCEEEEE--cCeEEEEECc
Confidence 2344666655432211100 011233366665543211 111 235788999999 99999888 8899999999
Q ss_pred CCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccc
Q 001367 609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
+++.+..+.... .+..++|+|++++|++++.++.|.+||..+++.+..+.
T Consensus 284 ~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 284 QRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp TTEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred cCeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 999988887543 36789999999999988889999999999887766554
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=4e-19 Score=212.64 Aligned_cols=252 Identities=16% Similarity=0.176 Sum_probs=184.6
Q ss_pred CccEEEEEECCCCCEEEEEEC-CCEEEEEEeeCCcccceeEEEeccc-cCeeEEEEcCCCCceEEEEeeC---CCcEEEE
Q 001367 396 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW 470 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~~---d~~i~iw 470 (1091)
..+|.+++|+|||++||+++. ||++.||++.+++.. .+..|. ..+..++|+|| + ++++++. +....+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 468999999999999999887 999999999776532 344555 58999999999 5 6776664 4555665
Q ss_pred eCCC---CceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEE
Q 001367 471 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 471 d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 547 (1091)
.+.. +... .+.... .+...+|++++++..+++++.++.. +||+.+++.......+. .+++|||||++|+++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5432 3322 443222 3345577777666566666665555 99998876555443332 789999999999988
Q ss_pred ecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeEEEEeCCCCCCCC
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN 625 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v 625 (1091)
+.+..+...|++||+.+++.. .+..+. ..+..++|+|||+.|+++..++ .|++||+.+++.. .+..+. ..+
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~ 240 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDF 240 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cCh
Confidence 765444477999999988765 555555 6789999999999999888888 8999999998877 544332 245
Q ss_pred ceEE--------EccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeee
Q 001367 626 PRIC--------FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 626 ~~v~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1091)
..++ |+|||.++++++.++.+++|++ ++... .....+.++++
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~ 290 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVL 290 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEE
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEe
Confidence 5666 9999999999999999999999 54443 23345666776
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=1.4e-17 Score=204.66 Aligned_cols=364 Identities=10% Similarity=-0.000 Sum_probs=238.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC-CCC--ceEEEccCCCEEEEEECC---------CeEE
Q 001367 580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PEN--PRICFNKNGTLLAVIANE---------NRIK 647 (1091)
Q Consensus 580 ~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v--~~v~~s~~~~~l~~~~~d---------g~i~ 647 (1091)
...++.|+|++++++++ |+.|++||+.+++....+..+... ..+ ..++|||||++|+.++.+ +.++
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35578999999888876 999999999999988777665431 122 348999999999999876 5677
Q ss_pred EEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeec
Q 001367 648 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 727 (1091)
Q Consensus 648 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 727 (1091)
+||+.+++.. .+..+...+..++| ||||+.++.+ .++.|.+|+...+... .+..
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~---------------------SPdG~~la~~-~~~~i~~~~~~~~~~~---~lt~ 149 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTW---------------------SPVGHKLAYV-WNNDIYVKIEPNLPSY---RITW 149 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEE---------------------CSSTTCEEEE-ETTEEEEESSTTSCCE---ECCS
T ss_pred EEECCCCcEE-EcccCCCcceeeEE---------------------CCCCCEEEEE-ECCeEEEEECCCCceE---EEcC
Confidence 9999988654 35556667888888 7888888777 4588999997654322 2211
Q ss_pred CCccccc-----------------cEEEEEEecCCCeEEEeecC-ceEEEeecCCcccccccceeeccCCccccCCCCCc
Q 001367 728 PSKVKAN-----------------KISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 789 (1091)
Q Consensus 728 ~~~~~~~-----------------~i~~~~~s~dg~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1091)
. ++.. ....+.|||||+.|+....| +.+.+|++..... .
T Consensus 150 ~--g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-----------------~---- 206 (740)
T 4a5s_A 150 T--GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-----------------E---- 206 (740)
T ss_dssp C--CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS-----------------T----
T ss_pred C--CCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC-----------------C----
Confidence 1 1221 22358999999999888765 4477776532110 0
Q ss_pred eeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccC---ce--eEEEec------CCCCCeEEEEEcCCCCcEE
Q 001367 790 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK--TILTIM------PPSPTATSLAFNPHDNNVI 858 (1091)
Q Consensus 790 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~---~~--~~~~~~------~~~~~i~~l~~s~~~~~~l 858 (1091)
..+...+..+.+.+.|.... ..+|.+||+.+ ++ ....+. ++...+..++|+| |++++
T Consensus 207 --------~~~~~~~~~~~yp~~G~~~~---~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~ 274 (740)
T 4a5s_A 207 --------SLQYPKTVRVPYPKAGAVNP---TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERIS 274 (740)
T ss_dssp --------TCSSCEEEEEECCBTTSCCC---EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEE
T ss_pred --------CCCCCcceeecCCCCcCcCC---eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEE
Confidence 01334556677777664311 23689999998 73 233333 2667799999999 78866
Q ss_pred EEEeC----CCeEEEEeccCcc----ee--eee--ccccCCeE-----EEEECCCCCEEE-EEeC-C--CcEEEEEcCCC
Q 001367 859 AIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT-----GLVFSDALNILV-SSGG-D--AQIFVWDVDGW 917 (1091)
Q Consensus 859 a~g~~----dg~i~iwd~~~~~----~~--~~l--~~h~~~V~-----~l~~spdg~~la-s~s~-D--g~i~vwd~~~~ 917 (1091)
+.... +..|++||+.+++ +. ..+ .+|.+.|. .++|||||+.|+ ..+. + ..|++||+.++
T Consensus 275 ~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 275 LQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp EEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred EEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 65533 3479999999987 32 222 45665554 789999999887 6654 3 36888998875
Q ss_pred ceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-Eec-----C--eEEEEEcCCcceeeeeec---CCccCEEEEEEe
Q 001367 918 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T--HLAIYEAEELTCLKQWFP---ISSVPISQATFS 986 (1091)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d-----~--~i~vwd~~~~~~~~~~~~---~h~~~v~~v~fs 986 (1091)
.. .+...+.. .+..+. ++|++.|+. +.. + .|+..++..+.....+.. +....+..+.||
T Consensus 355 ~~-----~~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S 424 (740)
T 4a5s_A 355 DC-----TFITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFS 424 (740)
T ss_dssp SC-----EESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEEC
T ss_pred ce-----EecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEEC
Confidence 52 22233322 244443 355777765 433 2 455555554443212221 124578899999
Q ss_pred eCCCEEEEEEcC---CcEEEEeCCCCceEEEee
Q 001367 987 CDCRMVFTSFVD---GTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 987 ~dg~~l~t~~~d---g~v~iwd~~~~~~~~~~~ 1016 (1091)
|||++++..... ..+.+++..+++....+.
T Consensus 425 ~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 425 KEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp TTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 999987755543 368888988887654443
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=1.2e-17 Score=185.96 Aligned_cols=299 Identities=9% Similarity=0.007 Sum_probs=191.5
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEE-ECCCeEEEEECCCCCeeccccc
Q 001367 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGV 662 (1091)
Q Consensus 584 v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 662 (1091)
+++++++..+++++.++.|++||..+++.+..+..+.. ..+..++|+|++++++++ ..++.|.+||+.+++....+..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45778888899999999999999999999888876541 136789999999876555 4688999999887644332211
Q ss_pred ccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEe
Q 001367 663 LSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 742 (1091)
Q Consensus 663 ~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 742 (1091)
... ++ .....+..++|+
T Consensus 84 ~~~-----------------------------~~----------------------------------~~~~~~~~~~~s 100 (349)
T 1jmx_B 84 SSV-----------------------------PG----------------------------------EVGRSMYSFAIS 100 (349)
T ss_dssp CCS-----------------------------TT----------------------------------EEEECSSCEEEC
T ss_pred ccc-----------------------------cc----------------------------------cccccccceEEC
Confidence 000 00 001112345566
Q ss_pred cCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCC
Q 001367 743 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 822 (1091)
Q Consensus 743 ~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg 822 (1091)
|+|++++++..+.... ...+ ...++
T Consensus 101 pdg~~l~~~~~~~~~~-----------------------------------------------------~~~~--~~~~~ 125 (349)
T 1jmx_B 101 PDGKEVYATVNPTQRL-----------------------------------------------------NDHY--VVKPP 125 (349)
T ss_dssp TTSSEEEEEEEEEEEC-----------------------------------------------------SSCE--EECCC
T ss_pred CCCCEEEEEccccccc-----------------------------------------------------cccc--ccCCC
Confidence 6666555544321000 0000 01147
Q ss_pred eEEEEEccCcee---EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccC-------------
Q 001367 823 VISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK------------- 886 (1091)
Q Consensus 823 ~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~------------- 886 (1091)
.|.+||+.+++. +..+. +...+.+++|+| +++ +++++. .|++||+.+++.+..+..+..
T Consensus 126 ~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (349)
T 1jmx_B 126 RLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF 200 (349)
T ss_dssp EEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT-TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred eEEEEECCCccccceeeecc-CCCcccceeECC-CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceee
Confidence 899999998543 33343 334688999999 777 555543 499999999988776654320
Q ss_pred -----------CeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcC-CCCEEEEE
Q 001367 887 -----------RVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV 953 (1091)
Q Consensus 887 -----------~V~~l~~spdg~~las~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~-dg~~la~~ 953 (1091)
....+++++|+....... ....+..++..+++...... .. .. ..+..++|+| ||++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~---~~~~~~~~sp~dg~~l~~~ 273 (349)
T 1jmx_B 201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF-AD---LT---ELYFTGLRSPKDPNQIYGV 273 (349)
T ss_dssp CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE-EE---CS---SCEEEEEECSSCTTEEEEE
T ss_pred ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc-cc---CC---CcceeeEecCCCCCEEEEE
Confidence 344567776653211100 01112224554443221111 11 11 2577999999 99999988
Q ss_pred ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 954 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 954 ~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|.+||+.+++.+..+.
T Consensus 274 -~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 274 -LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp -ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred -cCeEEEEECccCeEEEEEcCC--CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 899999999999887765433 356789999999999888889999999999999887765
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=4.8e-17 Score=181.70 Aligned_cols=249 Identities=9% Similarity=0.103 Sum_probs=168.7
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEEcc-CceeEEEecC-CCCCeEEEEEcCCCCc--EEEEEe-------------CC
Q 001367 802 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNN--VIAIGM-------------DD 864 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~~~~--~la~g~-------------~d 864 (1091)
..+..++++|||++|++++.+.|.+|++. +++....... ..+....++|+| +++ +++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46788999999999988885599999997 7776543321 112356789999 787 455553 68
Q ss_pred CeEEEEecc-Ccceeeeec----cccCCeEEEEECCCCCEEEEEeC-CCcEEEEEcC-CCceeeeeeeeccCCCcCCCCC
Q 001367 865 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS 937 (1091)
Q Consensus 865 g~i~iwd~~-~~~~~~~l~----~h~~~V~~l~~spdg~~las~s~-Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~ 937 (1091)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|++. +++......+.... +. ..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---DH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---CC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---CC
Confidence 999999997 466544433 24567999999999999887764 6799999998 66543222222111 11 24
Q ss_pred ceEEEEcCCCCEEEEEe--cCeEEEEEcC--Ccceee---ee--ec----CCcc------CEEEEE-EeeCCCEEEEEEc
Q 001367 938 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSFV 997 (1091)
Q Consensus 938 i~~l~fs~dg~~la~~~--d~~i~vwd~~--~~~~~~---~~--~~----~h~~------~v~~v~-fs~dg~~l~t~~~ 997 (1091)
+..++|+|||++|+++. ++.|.+|++. +++... .+ .. +|.. .+..++ |+|||++|++++.
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 78999999999998753 5789999865 555421 11 11 1222 588999 9999999887765
Q ss_pred CC------cEEEEeCC-CCceEEEeecccccCCCCcccccceeEEEeCCC--CCCeEEEEecC-CcEEEEecCCC
Q 001367 998 DG------TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1062 (1091)
Q Consensus 998 dg------~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~g~~d-g~v~~w~~~~~ 1062 (1091)
+. +|.+|++. +|+............. .. ..++|+|. |+++|++++.+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~-----~~--~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-----GG--HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-----CT--TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC-----Cc--ccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 33 89999996 6664432110111111 11 23567884 47888888765 89999998554
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=6.1e-18 Score=191.37 Aligned_cols=294 Identities=11% Similarity=0.018 Sum_probs=197.9
Q ss_pred ecCCCccEEE-----EEECCCCCEEEEEEC-CC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC
Q 001367 392 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463 (1091)
Q Consensus 392 ~~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~ 463 (1091)
+..|...... .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5566666665 899999999999987 66 48888988876433 2335555566789999999 7888888
Q ss_pred CCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEe----------------------cCCeEEEEecCCCCc
Q 001367 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA 521 (1091)
Q Consensus 464 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~iwd~~~~~~ 521 (1091)
++.|++||+.+++....+..+...+....+..++++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999998877776666666555554467777776432 346799999988754
Q ss_pred eeeecCCCCcEEEEEEcC-CCCEEEEEecCCC--CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC
Q 001367 522 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1091)
Q Consensus 522 ~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~ 598 (1091)
... ..+...+..+.|+| ||+.|+.+..... ....|+++|..++.......... ...+...+|+|||+.|+..+.
T Consensus 181 ~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 181 TVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEEEEECTTSSCEEEEEE
T ss_pred EEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--CcccccceECCCCCEEEEEec
Confidence 433 34455688999999 9999988765321 14468888887665433332221 125778899999998866442
Q ss_pred -C----CeEEEEECCCCeeEEEEeCCCC--C-CCCceEEEccCCCEEEEE---------ECCCeEEEEECCCCCeecccc
Q 001367 599 -D----HVIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 599 -d----g~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
+ +.|++||+.+++.......... . ......+|+|||+.|+.. ..+..|++||+.+++. ..+.
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~ 336 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVA 336 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEec
Confidence 2 2499999999875433322210 0 012334799999988864 4467899999988754 3333
Q ss_pred cccc-----------cceeeeeccccccccccccCCcccCCCCCCCCCcccccc-ccccccccccc
Q 001367 662 VLSD-----------NLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVE-AENKSEVEKPL 715 (1091)
Q Consensus 662 ~~~~-----------~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~-~d~~i~~w~~~ 715 (1091)
.+.. .+..++| +|||+.++..+ .++...+|.++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~---------------------spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 337 RHDTSWKVFEGDRQVTHPHPSF---------------------TPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ECCCCCCCBTTBSSTTCCCCEE---------------------CTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccCcccccccccccCCCCccC---------------------CCCCCEEEEEecCCCceeEEEEE
Confidence 3333 2444455 78887776443 46677777654
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=2e-16 Score=175.36 Aligned_cols=297 Identities=11% Similarity=0.116 Sum_probs=201.3
Q ss_pred CCCceEEEEE-----cCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEEC--
Q 001367 344 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-- 416 (1091)
Q Consensus 344 pdg~~llasg-----~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-- 416 (1091)
+++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|+|||++|+++..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~ 71 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH 71 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence 3555554443 2378999999999987653 3334444 8999999999999862
Q ss_pred --------CCEEEEEEeeCCcccceeEEEec---cccCeeEEEEcCCCCceEEEEee--CCCcEEEEeCCCCceeEE-ec
Q 001367 417 --------KHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE 482 (1091)
Q Consensus 417 --------d~~i~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~-~~ 482 (1091)
++.|.+||..+++.+..+..... +......++|+|||+ +|+++. .+++|.+||+.+++.+.+ +.
T Consensus 72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 56899999988776553322111 224567899999999 555554 368999999999998887 54
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee-------eecCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
... . ..+.+.|.+ ...+++.+.||.+.+|+++...... .+.....+ ..+.+++++..++.... ++
T Consensus 150 ~~~-~-~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~ 221 (361)
T 2oiz_A 150 AAG-C-WSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG 221 (361)
T ss_dssp GTT-E-EEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred CCC-c-ceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence 322 1 223344432 2577888999999999886533322 11122222 23344677777766654 45
Q ss_pred EEEEEecCCcee--eEEEeccc---cc----ccceEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeEEE
Q 001367 556 FLVEWNESEGAI--KRTYQGLQ---LQ----HNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 556 ~i~iwd~~~~~~--~~~~~~~~---~~----~~~v~~v~~~~~~~~l~~~s~-----------dg~i~iwd~~~~~~~~~ 615 (1091)
.++++|+..... ...+.... .. ......++|+|++++++++.. .+.|.+||+.+++.+..
T Consensus 222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 699999875532 22221100 00 011123689999998887643 35899999999999999
Q ss_pred EeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC--Ceecccccccccceeeeecccc
Q 001367 616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPIS 676 (1091)
Q Consensus 616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~ 676 (1091)
+..+. +..++|+|||++|+++.. +.|.+||..++ +.+..+.........+++.|++
T Consensus 302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 98764 689999999999998887 99999999999 8887765556666677775443
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=5.4e-17 Score=184.14 Aligned_cols=298 Identities=11% Similarity=-0.003 Sum_probs=193.3
Q ss_pred hheeeecccCCCC-----cEEEEEcCCCceEEEEEcCC--CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC
Q 001367 324 KTVAQTLIEGSSS-----PMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396 (1091)
Q Consensus 324 ~~~~~~l~~h~~~-----V~~v~fspdg~~llasg~~d--g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 396 (1091)
...++.|..+... +..++|||||++++++...+ ..|.+||+.+++... +..+.
T Consensus 20 g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~--------------------l~~~~ 79 (396)
T 3c5m_A 20 QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ--------------------LTEGK 79 (396)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE--------------------CCCSS
T ss_pred CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE--------------------eecCC
Confidence 3344555554333 88899999999766665543 468888998886543 22232
Q ss_pred cc-EEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeE-------------------EEEcCCCCce
Q 001367 397 VS-VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQI 456 (1091)
Q Consensus 397 ~~-V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------~~~s~d~~~~ 456 (1091)
.. ...+.|||||++|+.++.++.|++||+.+++... ....+...... +.|+|+++.
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~- 155 (396)
T 3c5m_A 80 GDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW- 155 (396)
T ss_dssp CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH-
T ss_pred CCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc-
Confidence 33 3347899999999999999999999998876432 22223332222 356788873
Q ss_pred EEEEe-----eCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC------CeEEEEecCCCCceeee
Q 001367 457 SVITC-----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDY 525 (1091)
Q Consensus 457 ~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~ 525 (1091)
++.. ..+..|.+||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+.........
T Consensus 156 -~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 156 -EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp -HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS
T ss_pred -eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEee
Confidence 3332 45678999999988765444 46667888888542 45556655543 35888888665433333
Q ss_pred cCC-CCcEEEEEEcCCCCEEEEEecC-CCCceEEEEEecCCceeeEEEecccccccceEEEEEcC-CCCEEEEEe-----
Q 001367 526 DAP-GLGCTRMAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG----- 597 (1091)
Q Consensus 526 ~~~-~~~i~~~~~s~d~~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~s----- 597 (1091)
... ...+..++|+|||++|+..+.. +.....|++||+.+++....... . ... +.|+| +++.+++++
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p~ 306 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAPV 306 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC--
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcce
Confidence 321 3357889999999988776542 21225599999998875443322 1 123 88999 999888754
Q ss_pred -----------CCCeEEEEECCCCeeEEEEeCCCCC--------CCCceEEEccCCCEEEEEEC-CCe--EEEEECCCC
Q 001367 598 -----------DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENR--IKILETPES 654 (1091)
Q Consensus 598 -----------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~--i~iwd~~~~ 654 (1091)
.++.|++||+.+++........... ..+..++|+|||+.|+..+. ++. |+.+++.++
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 307 DVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp --------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred eeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 3478999999888754333222110 01466899999998888775 444 444455544
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=5.7e-16 Score=171.73 Aligned_cols=304 Identities=10% Similarity=0.094 Sum_probs=206.1
Q ss_pred cCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEec------CCCCceEEEEEecCCceeeEEEecccc---c
Q 001367 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEGAIKRTYQGLQL---Q 577 (1091)
Q Consensus 507 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~------~~~~~~~i~iwd~~~~~~~~~~~~~~~---~ 577 (1091)
.|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..+++.+..+..... +
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999888877766655444 8999999999998763 122367799999999988887764310 1
Q ss_pred ccceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeEEE-EeCCCCCCCCceEEEccCC-CEEEEEECCCeEEEEECCC
Q 001367 578 HNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPE 653 (1091)
Q Consensus 578 ~~~v~~v~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~ 653 (1091)
......++++|+|++++++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..+++.+.||.+.+|+...
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 234667899999999999863 68999999999998887 65432 2335677765 6778888999999998764
Q ss_pred -CCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccc
Q 001367 654 -SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 732 (1091)
Q Consensus 654 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 732 (1091)
++...... ...+|+...
T Consensus 183 ~g~~~~~~~----------------------------------------------~~~~~~~~~---------------- 200 (361)
T 2oiz_A 183 DGKVASQSR----------------------------------------------SKQMFSVKD---------------- 200 (361)
T ss_dssp TSSEEEEEE----------------------------------------------CCCCSCTTT----------------
T ss_pred CCcEeeecc----------------------------------------------ccceEcCCC----------------
Confidence 32221000 001111110
Q ss_pred cccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCC
Q 001367 733 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 812 (1091)
Q Consensus 733 ~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 812 (1091)
.. ..+.+++++..++..+.++.+.++|+....... ...|........ ... -.......++++||
T Consensus 201 -~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~---~~~--~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 201 -DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK---AKN--WVPGGYNLVGLHRA 264 (361)
T ss_dssp -SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH---HTT--CEECCSSCEEEETT
T ss_pred -Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc---ccc--cccCCeeEEEEecC
Confidence 00 011224556666666667788888864322100 000111000000 000 00111223789999
Q ss_pred CCEEEEEe------------CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc--cee
Q 001367 813 DAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVI 878 (1091)
Q Consensus 813 g~~la~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~--~~~ 878 (1091)
++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+| ++++|++++. +.|.+||..++ +.+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceee
Confidence 88877653 2479999999999999998776 99999999 8888888886 99999999999 999
Q ss_pred eeeccccCCeEEEEECCCCC
Q 001367 879 SKLEGHSKRVTGLVFSDALN 898 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spdg~ 898 (1091)
.++..+......++++|||+
T Consensus 341 ~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 341 RTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEETTSCSSEEEEEECCCSC
T ss_pred EEeccCCCCcEEEEecCCCC
Confidence 88877777889999999986
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=1.9e-16 Score=176.79 Aligned_cols=250 Identities=9% Similarity=0.057 Sum_probs=172.2
Q ss_pred CCccEEEEEECCCCCEEEEEECCCEEEEEEee-CCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-----------
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------- 462 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~----------- 462 (1091)
+...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 33568899999999999999888 89999997 765432 1122111 236679999999853455553
Q ss_pred --CCCcEEEEeCC-CCceeEEec----CCCcceEEEeecccCCceEEEEEe-cCCeEEEEecC-CCCcee--eec--CCC
Q 001367 463 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARV--DYD--APG 529 (1091)
Q Consensus 463 --~d~~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~--~~~--~~~ 529 (1091)
.++.+.+|++. +|+....+. .+...+.+++|+ ++|++++++. .++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s--pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD--PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC--CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 466554443 245678888885 4677777665 46899999998 554322 232 235
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC--CceeeE---EEecccc----ccc------ceEEEE-EcCCCCEE
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI 593 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~----~~~------~v~~v~-~~~~~~~l 593 (1091)
..+..++|+|||++++++.. .++.|.+|++. +++... .+..... +.. .+..++ |+|||+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 56889999999999988763 24568887654 565432 2222110 011 478899 99999998
Q ss_pred EEEeCC-C-----eEEEEECC-CCeeEEE---EeCCCCCCCCceEEEcc---CCCEEEEEECC-CeEEEEECCCC
Q 001367 594 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES 654 (1091)
Q Consensus 594 ~~~s~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iwd~~~~ 654 (1091)
+++..+ + .|.+|++. +++.... ..... .....++|+| ||++|+++..+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876532 2 89999986 6665432 22222 2457889999 89999999864 89999998765
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=1.9e-14 Score=167.14 Aligned_cols=329 Identities=11% Similarity=0.102 Sum_probs=223.9
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeeEEEEeCCCCCCCCceEEEc
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
++.|.++|..+++.+..+.... .+..+.|+||++++++++.++.|.+||+. +++.+..+..... ...++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~----~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~---P~~ia~s 248 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---ARSIETS 248 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---EEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEeCCC----CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC---CceeEEc
Confidence 6679999999999988887533 56789999999999999999999999996 8888888775432 4789999
Q ss_pred ----cCCCEEEEEEC-CCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccc
Q 001367 632 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAE 706 (1091)
Q Consensus 632 ----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d 706 (1091)
|||++++++.. ++++.++|..+.+.+..+......+....+
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~---------------------------------- 294 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY---------------------------------- 294 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE----------------------------------
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc----------------------------------
Confidence 69998887765 599999998887666544321100000000
Q ss_pred cccccccccccCCcccceeecCCccccccEEEEEEecCCCeEE-EeecCceEEEeecCCcccccccceeeccCCccccCC
Q 001367 707 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 785 (1091)
Q Consensus 707 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1091)
.....+..+..++++..++ .....|.+.++|+.....
T Consensus 295 ------------------------~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~------------------ 332 (567)
T 1qks_A 295 ------------------------HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN------------------ 332 (567)
T ss_dssp ------------------------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE------------------
T ss_pred ------------------------cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc------------------
Confidence 0122566777888766444 444568888888643211
Q ss_pred CCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecC-----CCCCeEEEEEcCCCCcEE
Q 001367 786 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVI 858 (1091)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~l 858 (1091)
+....+ ........+.|+|||++++++. +++|.++|+.+++.+..+.. |.+.-.. -++|+++.+.
T Consensus 333 ----~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~ 404 (567)
T 1qks_A 333 ----LKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVW 404 (567)
T ss_dssp ----EEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEE
T ss_pred ----ceeeee---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEE
Confidence 101011 1233456789999999998886 58999999999998876653 2221112 2578345555
Q ss_pred EEEe-CCCeEEEEeccC-------cceeeeeccccCCeEEEEECCCCCEEEEEeC-------CCcEEEEEcCCCce---e
Q 001367 859 AIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI---Q 920 (1091)
Q Consensus 859 a~g~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~las~s~-------Dg~i~vwd~~~~~~---~ 920 (1091)
+++. .++.|.++|..+ .+.+.++......-..+..+||+++|..... ..+|.|+|+.+.+. .
T Consensus 405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~ 484 (567)
T 1qks_A 405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 484 (567)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence 5553 468999999987 5667777655444345788999999887653 35899999987511 1
Q ss_pred ee-eeeecc--CCCcCCCCCceEEEEcCCCCEEEEE------ecCeEEEEEcCCcceeeeee
Q 001367 921 TC-RSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 973 (1091)
Q Consensus 921 ~~-~~~~~~--~~~~~~~~~i~~l~fs~dg~~la~~------~d~~i~vwd~~~~~~~~~~~ 973 (1091)
.. ..+... .+.......+..+.|+|+|+++.++ .++.|.|+|.++++....+.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 11 222210 0000011358899999999998774 26889999999998877643
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=7.7e-16 Score=187.49 Aligned_cols=294 Identities=10% Similarity=0.001 Sum_probs=194.8
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEE--cCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEE-----
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN----- 400 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg--~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~----- 400 (1091)
..+.+|...|..++|++++- +++++ +.++...||....+..... +..|...+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~ 76 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE 76 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred HHHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence 34678899999999999875 45666 5578899999654443332 444555555
Q ss_pred ----EEEEC--CCCCE-EEEEEC-CCEEEEEEee--C-CcccceeEEEec-----cccCeeEEEEcCCCCceEEEEeeCC
Q 001367 401 ----RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD 464 (1091)
Q Consensus 401 ----~l~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~~~~s~d~~~~~l~s~~~d 464 (1091)
..+|+ |||++ |+.++. +..|.+|++. + ++ .+ .+.. |...+..++|+|||+ .|++++.+
T Consensus 77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~ 150 (662)
T 3azo_A 77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE 150 (662)
T ss_dssp TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence 55565 99999 887654 4556666665 2 33 22 3444 667889999999999 67766665
Q ss_pred ----------CcEEEEeCCC------CceeEEec-CCCcceEEEeecccCCceEEEEEecC--------CeEEEEecC-C
Q 001367 465 ----------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYD-S 518 (1091)
Q Consensus 465 ----------~~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~ 518 (1091)
..|++||+.+ ++ ...+. .+...+..++| ++||++|+.++.+ ..|++||++ +
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 5899999988 54 45555 56667777777 5678889887755 379999998 4
Q ss_pred C---CceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccccccc-----ceEEEEEcCCC
Q 001367 519 L---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAK 590 (1091)
Q Consensus 519 ~---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~v~~~~~~ 590 (1091)
+ ........+...+..++|+|||++++++.. ++...|++||..+++.......+..... .+..++|+|++
T Consensus 228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred CcccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence 5 233333344678899999999995555433 3345789999877776544443321000 15678899999
Q ss_pred CEEEEEeCCCeEEEE--ECCCCeeEEEEeCCCCCCCCceEEEccCCCE--EEEEECCC--eEEEEECCCCCee
Q 001367 591 DQILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSV 657 (1091)
Q Consensus 591 ~~l~~~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iwd~~~~~~~ 657 (1091)
..+++++. +.+++| |..+++ +..+..+.. .+..+ +++++.. ++.++.+. .|+++++.+++..
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~--~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESGE-LVDAAGPWT--EWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTTE-EEECCSSCC--EEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEEc-CccEEEEEECCCCc-EEEecCCCC--eEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 99999988 999999 666665 455554432 34544 1444443 33444444 4666676666543
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=1.2e-13 Score=160.58 Aligned_cols=325 Identities=13% Similarity=0.142 Sum_probs=219.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC--CCCeecccccccc
Q 001367 588 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSD 665 (1091)
Q Consensus 588 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~ 665 (1091)
|.+..+++...++.|.++|..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+. +.+.+..+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---- 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---- 237 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence 334456667789999999999999999887543 35689999999999999999999999985 443332221
Q ss_pred cceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEe---
Q 001367 666 NLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN--- 742 (1091)
Q Consensus 666 ~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--- 742 (1091)
.......++|+
T Consensus 238 ------------------------------------------------------------------~G~~P~~ia~s~~~ 251 (567)
T 1qks_A 238 ------------------------------------------------------------------IGSEARSIETSKME 251 (567)
T ss_dssp ------------------------------------------------------------------CCSEEEEEEECCST
T ss_pred ------------------------------------------------------------------cCCCCceeEEcccc
Confidence 01234578899
Q ss_pred -cCCCeEEEeec-CceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCC------CC-CCCeeEEEecCCC
Q 001367 743 -NGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS------NS-QEAVPCFALSKND 813 (1091)
Q Consensus 743 -~dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~v~~l~~s~dg 813 (1091)
|||++++++.. ++.+.++|..+.+. +........ .| ...+..+..++++
T Consensus 252 ~pDGk~l~v~n~~~~~v~ViD~~t~~~----------------------~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 252 GWEDKYAIAGAYWPPQYVIMDGETLEP----------------------KKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCE----------------------EEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred CCCCCEEEEEEccCCeEEEEECCCCcE----------------------EEEEeccccccccccccCCCceEEEEEcCCC
Confidence 69998887775 48888888543221 111111100 01 2367889999988
Q ss_pred CEEEEEe--CCeEEEEEccCceeE--EEecCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEeccCcceeeeecc-----
Q 001367 814 AYLFSAS--GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG----- 883 (1091)
Q Consensus 814 ~~la~~~--dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~i~iwd~~~~~~~~~l~~----- 883 (1091)
..++... .|.|.++|..+.+.+ ..+. .......+.|+| ++++++++. .++.|.++|+.+++.+..+.-
T Consensus 310 ~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P 387 (567)
T 1qks_A 310 PEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP 387 (567)
T ss_dssp SEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred CEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence 7666654 599999998865432 2222 344677899999 777766554 678999999999987765543
Q ss_pred ccCCeEEEEECCCCCEE-EEEe-CCCcEEEEEcCCCc-----eeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe--
Q 001367 884 HSKRVTGLVFSDALNIL-VSSG-GDAQIFVWDVDGWG-----IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-- 954 (1091)
Q Consensus 884 h~~~V~~l~~spdg~~l-as~s-~Dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~-- 954 (1091)
|.+.-.. .++|++..+ +++. .++.|.++|..+.. ......+....+ .-..+.++|++++|.+..
T Consensus 388 hpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~------g~~~i~~~p~~~~l~v~~~~ 460 (567)
T 1qks_A 388 HPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG------GSLFIKTHPNSQYLYVDATL 460 (567)
T ss_dssp CCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS------CCCCEECCTTCSEEEEECTT
T ss_pred CCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC------CCEEEEeCCCCCeEEEecCC
Confidence 4332222 257875544 4443 46899999998732 111122222211 224578899999999854
Q ss_pred ------cCeEEEEEcCCc-----cee-eeee-------cCCccCEEEEEEeeCCCEEEEEEc-----CCcEEEEeCCCCc
Q 001367 955 ------ETHLAIYEAEEL-----TCL-KQWF-------PISSVPISQATFSCDCRMVFTSFV-----DGTLSIHEASNLE 1010 (1091)
Q Consensus 955 ------d~~i~vwd~~~~-----~~~-~~~~-------~~h~~~v~~v~fs~dg~~l~t~~~-----dg~v~iwd~~~~~ 1010 (1091)
.++|.++|+.+. ... ..+. ......+..+.|++||+++.++.. ++.|.|+|..+++
T Consensus 461 ~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 461 NPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp CSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 458999999877 211 1111 112457899999999998776643 7899999999999
Q ss_pred eEEEee
Q 001367 1011 VQCRIL 1016 (1091)
Q Consensus 1011 ~~~~~~ 1016 (1091)
+...+.
T Consensus 541 ~~~~i~ 546 (567)
T 1qks_A 541 LKHVIK 546 (567)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 987775
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.69 E-value=4.8e-15 Score=164.49 Aligned_cols=262 Identities=10% Similarity=0.113 Sum_probs=176.6
Q ss_pred CcEEEEEcCCCceEEEEEc--------CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 336 SPMSMDFHPVQHTLLLVGT--------NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~--------~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
.+..+++ ||++++.+.. .++.|.+||+.+++... + ..+.+++||||
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD 69 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD 69 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence 5677788 8986655431 25779999998876432 2 46788999999
Q ss_pred CCEEEEEECC---C--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC-------------------
Q 001367 408 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------------------- 463 (1091)
Q Consensus 408 g~~las~~~d---~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~------------------- 463 (1091)
|++||.++.+ + .|.+|++.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC--
T ss_pred CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceeec
Confidence 9999988653 3 47778887765332 233334 99999999999 4555442
Q ss_pred --------CCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCC-------eEEEEecCCCCceeeecCC
Q 001367 464 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP 528 (1091)
Q Consensus 464 --------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~ 528 (1091)
...|.+||+.+++.+..+.. . .+..++|+ +++ +++++..++ ...+|.++ ......+..+
T Consensus 143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~ 216 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK 216 (347)
T ss_dssp -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE
T ss_pred CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEeccC
Confidence 25799999998887455544 3 77788885 566 777665542 44555555 3333333333
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCC----CceEEEEEecCCceeeEEEecccccccceEE-EEEcCCCCEEEEEeCCCeEE
Q 001367 529 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK 603 (1091)
Q Consensus 529 ~~~i~~~~~s~d~~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-v~~~~~~~~l~~~s~dg~i~ 603 (1091)
..+..+ +|||++|+..+.... ....|++|| +++.......+. ..+.. +.|+ ++ .+++++.++.++
T Consensus 217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence 444443 999999988775331 245789999 555544444433 56775 8999 88 888899999999
Q ss_pred EEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeE-EEEECC
Q 001367 604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP 652 (1091)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iwd~~ 652 (1091)
+| +.+++....... ...+..++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 876665444433 23578899999 677777776654 677665
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=7.7e-16 Score=174.54 Aligned_cols=244 Identities=9% Similarity=-0.010 Sum_probs=165.0
Q ss_pred EEEEEECCCCCEEEEEECC---CEEEEEEeeCCcccceeEEEeccccC-eeEEEEcCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 399 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 399 V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
+.+++|||||++||.+... ..|.+||+.+++.. .+..+... ...+.|+|||+ .|+.++.++.|++||+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----QLTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----ECCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----EeecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence 6788999999999887643 37888898887532 23333333 33488999999 788888888999999998
Q ss_pred CceeEEecCCCcceEE---Eee--------------cccCCceEEEEE-----ecCCeEEEEecCCCCceeeecCCCCcE
Q 001367 475 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC 532 (1091)
Q Consensus 475 ~~~~~~~~~~~~~v~~---~~~--------------~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~i 532 (1091)
++.......+...... +++ ..++++..++.. ..+..|.+||+.+++..... .+...+
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~ 190 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL 190 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence 8766555544432222 211 123344444433 35667999999886654443 345578
Q ss_pred EEEEEcC-CCCEEEEEecCCCC--ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC-----CeEEE
Q 001367 533 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI 604 (1091)
Q Consensus 533 ~~~~~s~-d~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d-----g~i~i 604 (1091)
..+.|+| +++.|+.++..... ...|++||..+++......... ...+..++|+|+|++|+.++.+ +.|++
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 8999999 88888777642210 1568999987765433332111 2357889999999988776543 45999
Q ss_pred EECCCCeeEEEEeCCCCCCCCceEEEcc-CCCEEEEEE----------------CCCeEEEEECCCCCe
Q 001367 605 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS 656 (1091)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~~~ 656 (1091)
||+.+++......... .. +.|+| ||+++++++ .++.|++||+.++..
T Consensus 269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 9999887655443322 23 89999 999888765 347899999987753
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=1.5e-14 Score=176.22 Aligned_cols=250 Identities=11% Similarity=0.007 Sum_probs=173.4
Q ss_pred eecCCCccEEEEEECCCCCEEEEE--ECCCEEEEEEeeCCcccceeEEEeccccCee---------EEEEc--CCCCceE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQIS 457 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~--~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~---------~~~~s--~d~~~~~ 457 (1091)
.+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~- 93 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL- 93 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-
Confidence 366799999999999887777777 557889999975444333 4556666666 66666 999941
Q ss_pred EEEee-CCCcEEEEeCC--CCceeEEecC-----CCcceEEEeecccCCceEEEEEecC----------CeEEEEecCCC
Q 001367 458 VITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDSL 519 (1091)
Q Consensus 458 l~s~~-~d~~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~ 519 (1091)
|+.++ .+..|.+|++. ++.....+.. |...+..++|+ +||+.|++++.+ ..|++||+.+.
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL--PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE--TTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC--CCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 44433 36677777765 2034556655 56778888885 577889888877 57999999872
Q ss_pred -----Cceeeec-CCCCcEEEEEEcCCCCEEEEEecCCC----CceEEEEEecC-Cc---eeeEEEecccccccceEEEE
Q 001367 520 -----GARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVH 585 (1091)
Q Consensus 520 -----~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~v~ 585 (1091)
.....+. .+...+..++|||||++|+..+.+.. ....|++||+. ++ +......++. ..+..+.
T Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~ 248 (662)
T 3azo_A 172 AAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAE 248 (662)
T ss_dssp TTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEE
T ss_pred ccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceE
Confidence 2333444 44567888999999999998775432 23679999998 57 4444444433 6789999
Q ss_pred EcCCCCEEEEEeCCC--eEEEEECCCCeeEEEEeCCCCC------CCCceEEEccCCCEEEEEECCCeEEEEE
Q 001367 586 FDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKILE 650 (1091)
Q Consensus 586 ~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1091)
|+|||+.+++++.++ .|++||..+++.......+... ..+..++|+|++++++++.. +.+++|.
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 999999777777788 6777777677655443322211 11456788888888888777 7777774
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=1.6e-14 Score=158.43 Aligned_cols=249 Identities=12% Similarity=0.094 Sum_probs=180.8
Q ss_pred CCCeeEEEecCCCCEEEEEeCC-------------------------eEEEEEccCceeEEEec-CCCCCeEEEEEcCCC
Q 001367 801 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD 854 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~dg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~ 854 (1091)
-..+.+++++|+|+++++...+ .|.+||..+++.+..+. .+......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4578999999999999887743 69999999999887665 3445789999999 8
Q ss_pred CcEEEEEeCCCeEEEEeccCcc-eeeee---------ccccCCeEEEEECC-CCCEEEEEe-CCCcEEEEEcCCCceeee
Q 001367 855 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC 922 (1091)
Q Consensus 855 ~~~la~g~~dg~i~iwd~~~~~-~~~~l---------~~h~~~V~~l~~sp-dg~~las~s-~Dg~i~vwd~~~~~~~~~ 922 (1091)
++++++...++.|++|+..... .+..+ .++......++++| +|.++++.+ .++.|++|+.+. .....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 8888888889999999986542 44544 34555789999999 888888886 689999999544 32211
Q ss_pred eeeecc-----CCCcCCCCCceEEEEcCC-CCEEEE-EecCeEEEEEcCCcceeeeee-cCCccCEEEEEEee------C
Q 001367 923 RSLQTP-----DGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------D 988 (1091)
Q Consensus 923 ~~~~~~-----~~~~~~~~~i~~l~fs~d-g~~la~-~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~v~fs~------d 988 (1091)
...... .+.. .....++|+|+ |.++++ ..++.|++||..+++.+..+. ..+...+..++|+| +
T Consensus 181 ~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~ 257 (329)
T 3fvz_A 181 WGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN 257 (329)
T ss_dssp ECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred eccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence 100000 0111 24789999999 555555 367799999999888887753 23567888999999 3
Q ss_pred CCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCC
Q 001367 989 CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 989 g~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~ 1062 (1091)
|+..++...+..|++|++.+++.+..+.... ...-.+..++++| ||.++++...++.|++|++...
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred CCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 3333333344589999999999887764211 1112356788999 4788999999999999998543
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=1.9e-14 Score=157.76 Aligned_cols=248 Identities=11% Similarity=0.077 Sum_probs=183.2
Q ss_pred CCcEEEEEcCCCceEEEEEcCC------------------------CcEEEEEcCCCCceeeeceeEEeccccccceeee
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~d------------------------g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1091)
+.|.+++++|+|+ ++++...+ ++|.+||..+|+.+...
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------- 85 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----------------- 85 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence 4899999999998 66777766 47999999888865420
Q ss_pred eecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCc-ccceeEEE---------eccccCeeEEEEcC-CCCceEEE
Q 001367 391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI 459 (1091)
Q Consensus 391 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~~---------~~h~~~v~~~~~s~-d~~~~~l~ 459 (1091)
-.++-..+..++++|+|+++++...++.|++|+..+.. .+. .+ .++......++|+| ++. +++
T Consensus 86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 12345678999999999988888888999999986542 222 33 23445789999999 677 677
Q ss_pred Eee-CCCcEEEEeCCCCceeEEecCC----------CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec--
Q 001367 460 TCG-DDKTIKVWDAVTGSRTYSFEGH----------GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-- 526 (1091)
Q Consensus 460 s~~-~d~~i~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-- 526 (1091)
+.+ .++.|++|| .+|+.+..+... -.....+++++. .+.++++...++.|++|+.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 775 689999999 678877777432 233788888543 26788888899999999998777666653
Q ss_pred CCCCcEEEEEEcCCCCEEEEEec---CCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEE
Q 001367 527 APGLGCTRMAYSANGRRLFSCGT---SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d~~~l~~~~~---~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~ 603 (1091)
.....+..++++| +..+.+.+. .......|++||..+++.+..+.....+...+..++++|+|..+++...++.|+
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 3455788999999 443333321 012245799999999999888753222346789999999997777778899999
Q ss_pred EEECCC
Q 001367 604 IWDMNK 609 (1091)
Q Consensus 604 iwd~~~ 609 (1091)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=6.2e-14 Score=150.59 Aligned_cols=241 Identities=10% Similarity=0.092 Sum_probs=173.9
Q ss_pred CCCCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecC------CCCCeEEEEEc-CCCCcEEEEEeC-CCeEEEE
Q 001367 800 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY 870 (1091)
Q Consensus 800 ~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-~~~~~~la~g~~-dg~i~iw 870 (1091)
+-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..++++ + +++++++... ++.|++|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence 556789999999999888765 6899999987 666665542 33578899994 6 7777776643 8899999
Q ss_pred eccCcceeeeec-cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCE
Q 001367 871 NARSSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 949 (1091)
Q Consensus 871 d~~~~~~~~~l~-~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~ 949 (1091)
| .+++.+..+. .+...+.+++++|+|+++++...++.|.+||..... . ..+.. .+.. ..+..++++++|++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~--~~~~~-~~~~---~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-L--HKFGC-SKHL---EFPNGVVVNDKQEI 177 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-E--EEEEC-TTTC---SSEEEEEECSSSEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-E--EEeCC-CCcc---CCcEEEEECCCCCE
Confidence 9 5677666664 344678999999999988888888999999976422 1 11111 1222 24789999999997
Q ss_pred EEEE-ecCeEEEEEcCCcceeeeeec-CCccCEEEEEEeeCCCEEEEEEcCC-cEEEEeCCCCceEEEeecccccCCCCc
Q 001367 950 FLLV-HETHLAIYEAEELTCLKQWFP-ISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1026 (1091)
Q Consensus 950 la~~-~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~v~fs~dg~~l~t~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~ 1026 (1091)
+++. .++.|++||.. ++.+..+.. ++...+..++++++|+++++...++ .|.+|+. +++.+..+....
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~------- 248 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV------- 248 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-------
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC-------
Confidence 7774 57899999974 555554322 2236789999999999888887775 9999995 566665554211
Q ss_pred ccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCC
Q 001367 1027 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 1027 ~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~ 1062 (1091)
....+..++++| +++++++ +.|++|++|++...
T Consensus 249 -~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 -KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred -CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 112355788999 4776666 67999999998553
No 179
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.66 E-value=6e-10 Score=137.89 Aligned_cols=587 Identities=9% Similarity=0.038 Sum_probs=339.8
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..|+++.-.++|.. -.|+.+| +..+|- .... .+...... . -.-....|.++...++|.+.+ |
T Consensus 43 n~v~~I~qD~~G~l--WigT~~G-L~ryDG---~~f~-----~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi-g 104 (795)
T 4a2l_A 43 STVFSIDQDKRGNM--WFATYDG-VNKYDG---YAFT-----VYQHNEDD----P--NSIANDISRIVKTDSQGRVWI-G 104 (795)
T ss_dssp SCEEEEEECTTSCE--EEEETTE-EEEECS---SCEE-----EECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-E
T ss_pred ceeEEEEEcCCCCE--EEeecCc-CcccCC---CceE-----EEeCCCCC----C--CcccccceeEEEECCCCCEEE-E
Confidence 38999999999963 3455555 566663 2211 11100000 0 000246799999999987665 4
Q ss_pred ECCCEEEEEEeeCCcccceeEEEecccc----CeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCC-Ccc-e
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-V 488 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~-v 488 (1091)
+.+| +..||..+++.. .+..... .|.++...++|. +.+ ++. +.|..||..+++.......+ ... |
T Consensus 105 T~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i 175 (795)
T 4a2l_A 105 TRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTI 175 (795)
T ss_dssp ESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCC
T ss_pred eCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcce
Confidence 4555 899998765421 2222111 288898888887 333 444 45889997766543211111 122 7
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceeee-cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1091)
.++... .++. +..++.++-+..|+..+....... ......|.++...+++...+..... -+..||..+++.
T Consensus 176 ~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~-----Gl~~~~~~~~~~ 247 (795)
T 4a2l_A 176 ASTLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGA-----GLFLINPKTKEI 247 (795)
T ss_dssp EEEEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSS-----CEEEEETTTTEE
T ss_pred EEEEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCC-----CeEEEeCCCCeE
Confidence 777663 3444 444666556888887665433221 1234568888888888766554221 288999887765
Q ss_pred eEEEecc----cccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-----CCCCCCceEEEccCCCEEE
Q 001367 568 KRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 568 ~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~ 638 (1091)
....... ......|.++...++|.. ..|+.+ .|.+||..+++........ -....|.++...++|. |.
T Consensus 248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 324 (795)
T 4a2l_A 248 KNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MW 324 (795)
T ss_dssp EEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EE
T ss_pred EEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EE
Confidence 4332211 112356999998888764 445555 5899998887654432211 1123578888888876 55
Q ss_pred EEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccC
Q 001367 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFAR 718 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~ 718 (1091)
+|+.++-|..|+..+.... .+.. .+.
T Consensus 325 igt~~~Gl~~~~~~~~~~~-~~~~-------------------------------~~~---------------------- 350 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRFK-NIRN-------------------------------IPY---------------------- 350 (795)
T ss_dssp EEESSSCEEEECGGGGSSE-EECC-------------------------------CTT----------------------
T ss_pred EEECCCCeEEeCCCcccce-EEcC-------------------------------CCC----------------------
Confidence 6777777888765432110 0000 000
Q ss_pred CcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCC
Q 001367 719 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 798 (1091)
Q Consensus 719 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1091)
+.......|.++...++|. |-.++.++-+..|+...... +.+....+. ....
T Consensus 351 ---------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~------~~~~ 402 (795)
T 4a2l_A 351 ---------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE------SARG 402 (795)
T ss_dssp ---------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC------------C
T ss_pred ---------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC------cccC
Confidence 0001234688888888887 55566666677776432211 001000000 0000
Q ss_pred CCCCCeeEEEecCCCC-EEEEEeCCeEEEEEccCceeEEEec----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEecc
Q 001367 799 NSQEAVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 873 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~-~la~~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~ 873 (1091)
-....|.+++..++|+ +.+...++.+..||..+++...-.. .+...|.++...+ ++.+.+ |+.+ -+.+|+..
T Consensus 403 l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~ 479 (795)
T 4a2l_A 403 IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNPE 479 (795)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEETT
T ss_pred CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeCC
Confidence 0245789999999999 5554446789999988876543322 2345789999988 676555 4444 58899988
Q ss_pred Ccceeeeec------cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC
Q 001367 874 SSEVISKLE------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 947 (1091)
Q Consensus 874 ~~~~~~~l~------~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg 947 (1091)
+++...... -+...|.++...++|++.+... . -|..||..++.. .........+.. ...|.++...++|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~~~~~~~~~~l~--~~~i~~i~~d~~g 554 (795)
T 4a2l_A 480 QRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-QKASILPVSNVT--KLFTNCIYEASNG 554 (795)
T ss_dssp TTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-EECCCSCSCGGG--GSCEEEEEECTTS
T ss_pred CCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-EEecCCCCCCCC--CCeeEEEEECCCC
Confidence 765433221 1236799999999998777544 4 488999887553 100000111111 1368899999999
Q ss_pred CEEEEEecCeEEEEEcCCcceeeeeecCC---ccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCC
Q 001367 948 TRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1024 (1091)
Q Consensus 948 ~~la~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 1024 (1091)
.+.+++.. .+..||..+++... +...+ ...|.++...++|.+.+++ . +-|..|+..++... .+....-++..
T Consensus 555 ~lWigT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~~ 629 (795)
T 4a2l_A 555 IIWVGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQSN 629 (795)
T ss_dssp CEEEEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSCS
T ss_pred CEEEEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCccc
Confidence 97776554 78899987765432 22111 4568899999999877654 4 45888998876543 34333333332
Q ss_pred CcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 1025 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 1025 ~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
.+..-++..++ +| .|..|+.+| +..++...
T Consensus 630 ----~f~~~~~~~~~-~G-~l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 630 ----QFNTASYCRTS-VG-QMYFGGING-ITTFRPEL 659 (795)
T ss_dssp ----CEEEEEEEECT-TS-CEEEEETTE-EEEECGGG
T ss_pred ----cCccCceeECC-CC-eEEEecCCc-eEEEcHHH
Confidence 22223445565 34 566677776 45566543
No 180
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.65 E-value=2.8e-10 Score=140.83 Aligned_cols=534 Identities=8% Similarity=0.036 Sum_probs=319.2
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..|.++...++|. | -.|+. +.+..||..+++...... . .......|.++...++|.+.+..
T Consensus 88 n~I~~i~~d~~g~-l-WigT~-~Gl~~yd~~~~~f~~~~~---------------~-~~~~~~~i~~i~~d~~g~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTDSQGR-V-WIGTR-DGLSRYDEEKDIFQNFFY---------------E-KNGKHLQVNGIEEISPEQLLIST 148 (795)
T ss_dssp SCEEEEEECTTSC-E-EEEES-SCEEEEETTTTEEEEECC---------------E-ETTEECCCCEEEEEETTEEEEEE
T ss_pred cceeEEEECCCCC-E-EEEeC-CchheeCCCCCeEEeccc---------------c-ccCCCceEEEEEECCCCCEEEEE
Confidence 4799999999998 4 33444 458999987765432100 0 00000118888888888766644
Q ss_pred ECCCEEEEEEeeCCcccceeEEEecc-ccC-eeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe-cCCCcceEEE
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 491 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~-v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~ 491 (1091)
. +.|..||..+++..... .++ ... |.++...+++. +..++.++-|..||..+++..... ......|.++
T Consensus 149 -~-~gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i 220 (795)
T 4a2l_A 149 -P-EGLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI 220 (795)
T ss_dssp -T-TEEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred -C-CceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence 4 44889998765321100 011 123 88888888886 444555556889998777643321 1234567777
Q ss_pred eecccCCceEEEEEecCCeEEEEecCCCCceeeecC-------CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC
Q 001367 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564 (1091)
Q Consensus 492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 564 (1091)
... .++. +..++.++-+..||..+......... ....|.++...++|...+... . -|.+||..+
T Consensus 221 ~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~-----Gl~~~~~~~ 291 (795)
T 4a2l_A 221 LQQ--SPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-N-----DLNIYHEGT 291 (795)
T ss_dssp EEE--ETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-S-----CEEEEETTT
T ss_pred EEc--CCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-C-----hhheEcCCC
Confidence 663 3444 45555554588888766543322211 235689999999888666442 1 288999887
Q ss_pred ceeeEEEec----ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC--C--CCCCCceEEEccCCCE
Q 001367 565 GAIKRTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTL 636 (1091)
Q Consensus 565 ~~~~~~~~~----~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~~~~ 636 (1091)
+........ .......|.++...++|. +..|+.++.|..|+..++......... . ....|.++...++|.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~- 369 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN- 369 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence 765433221 111236799999988876 566777788999987665433222111 0 123477888888776
Q ss_pred EEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccc
Q 001367 637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLF 716 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~ 716 (1091)
|.+|+.++-|..|+..++........ +...
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~--------------------------------~~~~------------------ 399 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQ--------------------------------EDES------------------ 399 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------------------------------------------------------
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecC--------------------------------CCCc------------------
Confidence 55677777788888765422110000 0000
Q ss_pred cCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCC
Q 001367 717 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 796 (1091)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1091)
. .......|.++...++|..|..++.++.+.+|+...... +.+.....
T Consensus 400 ------~-----~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~~--------- 447 (795)
T 4a2l_A 400 ------A-----RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRNS--------- 447 (795)
T ss_dssp -------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTTS---------
T ss_pred ------c-----cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCCC---------
Confidence 0 000234678888888888455566656677777443211 11110000
Q ss_pred CCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecC------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001367 797 DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIY 870 (1091)
Q Consensus 797 ~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~~la~g~~dg~i~iw 870 (1091)
......|.++...++|.+.+... +.+.+||..+++....... ....|.++...+ ++++.+ |+. +-+..|
T Consensus 448 -~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~ 522 (795)
T 4a2l_A 448 -QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSVF 522 (795)
T ss_dssp -CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEEE
T ss_pred -CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEEE
Confidence 01345789999999998777665 5688899887765433211 235789999988 676655 444 458889
Q ss_pred eccCcceeeeec-------cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEE
Q 001367 871 NARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 943 (1091)
Q Consensus 871 d~~~~~~~~~l~-------~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f 943 (1091)
+..+++. .+. .....|.++...++|++.++.. .| |..||..++... .+....+... ..|.++..
T Consensus 523 ~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~---~~~~~~gl~~--~~i~~i~~ 593 (795)
T 4a2l_A 523 KQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIK---RYNTTNGLPN--NVVYGILE 593 (795)
T ss_dssp EEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEE---EECGGGTCSC--SCEEEEEE
T ss_pred eCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEE---EeCCCCCCch--hheEEEEE
Confidence 9877665 221 2345799999999998776443 44 889998875532 2222233222 35888999
Q ss_pred cCCCCEEEEEecCeEEEEEcCCcceeeeeecCC---ccCE--EEEEEeeCCCEEEEEEcCCcEEEEeC
Q 001367 944 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPI--SQATFSCDCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 944 s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v--~~v~fs~dg~~l~t~~~dg~v~iwd~ 1006 (1091)
.++|.+.+++ ++.|..||..+++.. .+.... ...+ .++...++|.+++ |+.+| +..++.
T Consensus 594 d~~g~lWi~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p 657 (795)
T 4a2l_A 594 DSFGRLWLST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRP 657 (795)
T ss_dssp CTTSCEEEEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECG
T ss_pred CCCCCEEEEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-ecCCc-eEEEcH
Confidence 9999877766 566888888766533 222111 1222 4677788887655 66777 445554
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=2.2e-13 Score=146.26 Aligned_cols=248 Identities=14% Similarity=0.154 Sum_probs=176.4
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE-CCCCC
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 409 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spdg~ 409 (1091)
.+|-..+.+++++|+|+ ++++...++.|.+||.. ++.+..... .....+|...+..+++ .+++.
T Consensus 26 ~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~ 90 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGD 90 (286)
T ss_dssp TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTE
T ss_pred CCccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCe
Confidence 35556899999999998 77887888999999977 554432100 0001235567899999 57777
Q ss_pred EEEEEEC-CCEEEEEEeeCCcccceeEEEe-ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec--CCC
Q 001367 410 LLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG 485 (1091)
Q Consensus 410 ~las~~~-d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~ 485 (1091)
++++... ++.|.+|| .+++.+. .+. .+...+..++++++|+ ++++...++.|.+||. +++.+..+. .+.
T Consensus 91 l~v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 91 IIVTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL 163 (286)
T ss_dssp EEEEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTC
T ss_pred EEEEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCcc
Confidence 7776643 78999999 4554333 332 3445789999999998 7777777899999995 566666663 344
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC--CCcEEEEEEcCCCCEEEEEecCCCCce-EEEEEec
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGES-FLVEWNE 562 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~~-~i~iwd~ 562 (1091)
..+..++++ +++.++++...++.|++||.. ++....+... ...+..++++++|+.+++... ++ .|.+||.
T Consensus 164 ~~p~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~ 236 (286)
T 1q7f_A 164 EFPNGVVVN--DKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ 236 (286)
T ss_dssp SSEEEEEEC--SSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT
T ss_pred CCcEEEEEC--CCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC
Confidence 567888885 467788888889999999974 3444444433 246789999999987777643 33 7999995
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 610 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~ 610 (1091)
+++.+..+..+. ....+..++++|+++.+++ +.++.|++|++...
T Consensus 237 -~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 237 -DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred -CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 566666665543 1234789999999976555 67999999997653
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.62 E-value=1.8e-13 Score=150.75 Aligned_cols=274 Identities=10% Similarity=0.030 Sum_probs=187.2
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..|.+++|+|++.. ++..+.++.++.| .++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTI---TAEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEE---ECEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCccc---ccceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 36888999999874 4666778889999 2332221 44566778999999999988888
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC----CcEEEEeCCCCceeEEec--CCCcce
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV 488 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~--~~~~~v 488 (1091)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..++.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 888999999998875332 1224667899999999998 66666655 689999988877653433 244568
Q ss_pred EEEeecccCCceEEEEEec------CCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEec
Q 001367 489 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 562 (1091)
..+++++ ++.++++... .+.|..++.+..+... +......+..++|+|+++.++.+.. .++.|++||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8888854 5666666553 2455556554433322 2222234678999999997766542 2457999998
Q ss_pred CC-ceeeEEEe-----cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC----CCCCceEEEcc
Q 001367 563 SE-GAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK 632 (1091)
Q Consensus 563 ~~-~~~~~~~~-----~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~ 632 (1091)
.+ +.....+. ... ....+..++++++++.+++...++.|.+||. +++.+..+..+.. ...+..++|+|
T Consensus 212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence 63 33222211 111 0136788999999998787778899999998 5666666654421 11468999999
Q ss_pred CCCEEEEEECCC
Q 001367 633 NGTLLAVIANEN 644 (1091)
Q Consensus 633 ~~~~l~~~~~dg 644 (1091)
|++.|++++.++
T Consensus 290 dg~~L~v~~~~g 301 (333)
T 2dg1_A 290 GTNQLIICSNDI 301 (333)
T ss_dssp TSCEEEEEEECG
T ss_pred CCCEEEEEeCcc
Confidence 987777766653
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=1.5e-13 Score=168.08 Aligned_cols=250 Identities=10% Similarity=-0.005 Sum_probs=175.7
Q ss_pred CCCccEEEEEECCCCCEEEEEECCC-----EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCc--
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 466 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d~-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~-- 466 (1091)
+|...+..++|||||++||.+..++ .|++||+.+++.... .+. ...+..++|+|||+ .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~--~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGK--GMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCC--EEEEEEECCccc
Confidence 4556789999999999999876543 899999999875442 122 22367899999999 6666666655
Q ss_pred --------------EEEEeCCCCcee--EEec--CCCcceEEEeecccCCceEEEEEec-----CCeEEEEecCC-----
Q 001367 467 --------------IKVWDAVTGSRT--YSFE--GHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS----- 518 (1091)
Q Consensus 467 --------------i~iwd~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~----- 518 (1091)
|++|++.++... ..+. .|...+..+.| ++||++|+..+. +..|++||+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 999999887632 2223 34555677777 557788877765 56899999986
Q ss_pred -CC-ceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee--eEEEecccccccceEEEEEcCCCCEEE
Q 001367 519 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQIL 594 (1091)
Q Consensus 519 -~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~ 594 (1091)
+. ....+..+...+.. .|+|+|+.|+..+........|.+||+.++.. .+.+..+. ....+..++|++++..++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence 32 34444444444443 58899999888775443467899999988742 34444443 013678889987777777
Q ss_pred EEeCCCe--EEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC----CCeEEEEECCCCC
Q 001367 595 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1091)
Q Consensus 595 ~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 655 (1091)
+...++. |++|++.+++.+..+..+. ..+..++++|+++.++.... .++++.||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~--~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCCC--ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7888874 6667887788777776652 35778889999877664432 4789999998765
No 184
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=5e-09 Score=129.33 Aligned_cols=590 Identities=12% Similarity=0.089 Sum_probs=338.6
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..|+++.-.++|.. -.|+.+| +..||-.+ . +.+....... .. ..-....|.++...++|..|-+|
T Consensus 19 n~V~~I~qD~~G~l--WigT~~G-L~ryDG~~---f-----~~~~~~~~~~--~~--~~l~~n~I~~i~~d~~g~~lWig 83 (781)
T 3v9f_A 19 NYVLSITQDKQGFL--WFATEEG-LNKFDGTR---F-----ITYYKEEQSS--SV--QSITGNELNEVYTDPVQPVIWIA 83 (781)
T ss_dssp SBEEEEEECTTSCE--EEEESSC-EEEECSSS---E-----EEECCCSSCS--SS--CCCSCSCEEEEEECSSSSEEEEE
T ss_pred CEeEEEEECCCCCE--EEccCCc-CccccCCc---e-----EEEEcCCCCC--cc--ccccccccceEEEcCCCCEEEEE
Confidence 38999999999973 4455555 66676332 1 1111100000 00 00023569999999988845557
Q ss_pred ECCCEEEEEEeeCCcccceeEEEe-----c---cccCeeEEEEcC--CCCceEEEEeeCCCcEEEEeCCCCceeEEec--
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEID-----A---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFE-- 482 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~-----~---h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-- 482 (1091)
+.++-+..||..+++.. .+. . ....|.++.... +|. +..++.++-|..+|..+++......
T Consensus 84 t~~~Gl~~~d~~~~~f~----~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~ 156 (781)
T 3v9f_A 84 TQRAGLNAYNYETQSFS----VYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKST 156 (781)
T ss_dssp ESSSCEEEEETTTTEEE----EECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTT
T ss_pred eCCCCcceECCCCCeEE----eeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCc
Confidence 77745999998875421 121 0 123588888877 665 4445545568899977765433211
Q ss_pred ---CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-------CCCCcEEEEEEcCCCCEEEEEecCCC
Q 001367 483 ---GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 483 ---~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
.....|.++... .++ .|..++.++-+..||..+........ .....|.++...++|...+...
T Consensus 157 ~~~l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~---- 229 (781)
T 3v9f_A 157 VPALPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS---- 229 (781)
T ss_dssp CTTCSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET----
T ss_pred ccCCCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC----
Confidence 112456766653 344 45556666568888876644322111 1234688999888888666542
Q ss_pred CceEEEEEecCCceeeEEEecc----cccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe-------CC--
Q 001367 553 GESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG-- 619 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------~~-- 619 (1091)
. -+.+||..+++........ ......|.++...++|. +..|+..+-|.++|..++....... ..
T Consensus 230 -~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~ 306 (781)
T 3v9f_A 230 -K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDN 306 (781)
T ss_dssp -T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSS
T ss_pred -C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCC
Confidence 2 3899998777654322111 11235688998887765 5666665678899988765432221 10
Q ss_pred ---CCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCC
Q 001367 620 ---GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKED 696 (1091)
Q Consensus 620 ---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~ 696 (1091)
-....|.++...++|. |.+|+.++-|..++........ ... .+.
T Consensus 307 ~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~-------------------------------~~~ 353 (781)
T 3v9f_A 307 NYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY-------------------------------SPT 353 (781)
T ss_dssp TTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC-----------------------------------
T ss_pred CCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc-------------------------------Ccc
Confidence 1123577888888776 5667766778887765432110 000 000
Q ss_pred CCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeec
Q 001367 697 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 776 (1091)
Q Consensus 697 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 776 (1091)
. ..+.......|.++...++|. |..++.++-+..|+......
T Consensus 354 ~----------------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~--------- 395 (781)
T 3v9f_A 354 Q----------------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA--------- 395 (781)
T ss_dssp C----------------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE---------
T ss_pred c----------------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE---------
Confidence 0 000000234678888888887 55555555566676432211
Q ss_pred cCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEec--CCCCCeEEEEEcCCC
Q 001367 777 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHD 854 (1091)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~ 854 (1091)
..+.... ......|.+++..++|.+.+...++.+..++..+++...... .....|.++...+ +
T Consensus 396 ---~~~~~~~-----------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~ 460 (781)
T 3v9f_A 396 ---IYNKENR-----------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-N 460 (781)
T ss_dssp ---ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-T
T ss_pred ---EEccCCC-----------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-C
Confidence 0000000 013567899999889988776556778999987776543321 2346789999988 6
Q ss_pred CcEEEEEeCCCeEEEEeccCcceeeeeccc-----cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccC
Q 001367 855 NNVIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 929 (1091)
Q Consensus 855 ~~~la~g~~dg~i~iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 929 (1091)
+.+.+ |+. +-|..||..+++........ ...|.++...++|++.+.....| |..||..+++... +....
T Consensus 461 g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~~~ 534 (781)
T 3v9f_A 461 KKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQYE 534 (781)
T ss_dssp SEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECTTT
T ss_pred CCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccCCC
Confidence 66544 555 56899998876643322211 46799999999998776443345 7888887754322 22222
Q ss_pred CCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCC---ccCEEEEEEeeCCCEEEEEEcCCcEEEEeC
Q 001367 930 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPISQATFSCDCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 930 ~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~ 1006 (1091)
+.. ...|.++...++|.+.+++.+|-+..||..+++.. .+...+ ...|.++...++|.+.++ +.+| |..++.
T Consensus 535 ~l~--~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~ 609 (781)
T 3v9f_A 535 GFC--SNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYIT 609 (781)
T ss_dssp TCS--CSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEET
T ss_pred CCC--CCeeEEEEECCCCCEEEEECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEEC
Confidence 221 24688999999999887766554488998776532 221111 346788888999987664 4555 778888
Q ss_pred CCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 1007 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
.++... .+....-++.. ....-++..++ +| .|..|+.+| +..++...
T Consensus 610 ~~~~~~-~~~~~dGl~~~----~f~~~~~~~~~-~G-~l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 610 SKKCFY-TYDHSNNIPQG----SFISGCVTKDH-NG-LIYFGSING-LCFFNPDI 656 (781)
T ss_dssp TTTEEE-EECGGGTCCSS----CEEEEEEEECT-TS-CEEEEETTE-EEEECSCC
T ss_pred CCCceE-EecccCCcccc----ccccCceEECC-CC-EEEEECCCc-eEEEChhh
Confidence 766543 33322323322 22223455565 34 566677777 55666543
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=4.3e-13 Score=144.70 Aligned_cols=249 Identities=12% Similarity=0.049 Sum_probs=177.1
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..+..+..+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.++++
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~ 76 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCL 76 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeE
Confidence 3445566666788999999999878889999999999999887 322 3346678999999
Q ss_pred CCCCCEEEEEECCCEEEEEEeeCCcccceeEEEecc-ccCeeEEEEcCCCCceEEEE----ee-------------CCCc
Q 001367 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CG-------------DDKT 466 (1091)
Q Consensus 405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~~~l~s----~~-------------~d~~ 466 (1091)
+|+|+++++...++.|.+||..+++.........+. ...+..++++|+|+ ++++ ++ ..+.
T Consensus 77 ~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 77 NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcE
Confidence 999998888777789999999887643211111111 23567899999998 6666 32 1345
Q ss_pred EEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecC-CCCc---eeeecCCCCcEEEEEEcCCCC
Q 001367 467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGR 542 (1091)
Q Consensus 467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~~~~s~d~~ 542 (1091)
|..++.. ++ +..+..+......++|+ +++..+++.+.++.|.+|++. .+.. ...+......+.+++++++|+
T Consensus 155 l~~~~~~-g~-~~~~~~~~~~~~gi~~s--~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 155 VFRLAPD-GT-LSAPIRDRVKPNGLAFL--PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp EEEECTT-SC-EEEEECCCSSEEEEEEC--TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred EEEECCC-CC-EEEeecCCCCCccEEEC--CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence 6666654 44 34444566677888884 466677778888999999997 3332 223333444567899999999
Q ss_pred EEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEE-cCCCCEEEEEeCCCeEEEEECCCCee
Q 001367 543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL 612 (1091)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~-~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1091)
..++. .+.|.+||.. ++.+..+..+. . +.+++| +|+++.|++++.+ .+..++..+.++
T Consensus 231 l~v~~------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 231 IWASA------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEE------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EEEEc------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 77665 2349999986 77777777655 4 888999 6899999998876 455667666554
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=1.4e-13 Score=168.27 Aligned_cols=249 Identities=10% Similarity=-0.008 Sum_probs=172.2
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCC----cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+|...+..++|||||++|+.+.+.+| .|++||+.+|+.+.. . + ....+..++||||
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspD 181 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHD 181 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTT
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeC
Confidence 45557889999999996654444333 899999999986642 0 1 1123667999999
Q ss_pred CCEEEEEECCCE----------------EEEEEeeCCcccceeEEEe--ccccCeeEEEEcCCCCceEEEEeeC-----C
Q 001367 408 GSLLGVAYSKHI----------------VQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGD-----D 464 (1091)
Q Consensus 408 g~~las~~~d~~----------------i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~~~l~s~~~-----d 464 (1091)
|+.|+.++.++. |++|++.++...... .+. .|...+..+.|||||++ |+.++. +
T Consensus 182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~-v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~ 258 (710)
T 2xdw_A 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL-CAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPV 258 (710)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSC
T ss_pred CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceE-EeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCc
Confidence 999999987765 999999887532111 222 24556889999999995 444432 5
Q ss_pred CcEEEEeCCC------Cc-eeEEecCCCcceEEEeecccCCceEEEEEecC----CeEEEEecCCCCc--eeeecCCC--
Q 001367 465 KTIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG-- 529 (1091)
Q Consensus 465 ~~i~iwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~-- 529 (1091)
..|.+||+.+ +. ....+..+...+... +++ +|..|+..+.. +.|.+||+.+... ...+..+.
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 335 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK 335 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC
Confidence 7899999987 53 456666666666543 433 44555555443 3699999987652 23333333
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE-e---CCCeEEEE
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-G---DDHVIKIW 605 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-s---~dg~i~iw 605 (1091)
..+..++|++++..+++... ++...|++|++.+++.++.+..+. ..+..+.++|+++.++.. + ..++|+.|
T Consensus 336 ~~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~ 410 (710)
T 2xdw_A 336 DVLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHC 410 (710)
T ss_dssp CEEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEE
T ss_pred CeEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEE
Confidence 36778899877666666654 345678899987787777776654 678889999998877643 2 45789999
Q ss_pred ECCCCe
Q 001367 606 DMNKVQ 611 (1091)
Q Consensus 606 d~~~~~ 611 (1091)
|+.+++
T Consensus 411 d~~tg~ 416 (710)
T 2xdw_A 411 DLTKEE 416 (710)
T ss_dssp ETTSSS
T ss_pred ECCCCc
Confidence 998877
No 187
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=1.4e-11 Score=136.22 Aligned_cols=203 Identities=10% Similarity=0.011 Sum_probs=139.5
Q ss_pred eEEEecCCCCEEEEEe---CCeEEEEEccCceeEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee
Q 001367 805 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 880 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~ 880 (1091)
..++++|||++|++++ ++.|.++| .+++.+.+ +.... ++.+.|++.+.+++.+.||.+.+++. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4678888988888775 36799999 99988877 65332 24455645566777888999999999 8776633
Q ss_pred ec-----cccCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCC----cCCCCCceEEEEcCCCCEE
Q 001367 881 LE-----GHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRF 950 (1091)
Q Consensus 881 l~-----~h~~~V-~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~i~~l~fs~dg~~l 950 (1091)
.. ....++ ....+++++..++..+..+.+.+.|+.+........+...... ...+.....++|+||++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 21 111222 2356677766655555788999999976542221222111110 0001234458899999988
Q ss_pred EEEe-----------cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCC-EEEEEE-cCCcEEEEeCCCCceEEEe
Q 001367 951 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 951 a~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~-~l~t~~-~dg~v~iwd~~~~~~~~~~ 1015 (1091)
.+.. ++.|.++|..+++.+..+..+ ....+++|+|||+ +++++. .++.|.+||+.+++.+.++
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 7742 257999999999998887544 3688999999999 677776 4899999999999998774
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=4.4e-13 Score=163.26 Aligned_cols=247 Identities=11% Similarity=-0.016 Sum_probs=165.8
Q ss_pred cCCCccEEEEEECCCCCEEEEE-----ECCCEEEEEEeeCCcccceeEEEeccccCe--eEEEEcCCCCceEEEEeeCCC
Q 001367 393 RDPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNV--NDLAFSAPCKQISVITCGDDK 465 (1091)
Q Consensus 393 ~~h~~~V~~l~~spdg~~las~-----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v--~~~~~s~d~~~~~l~s~~~d~ 465 (1091)
.+|...+..++|||||++||.+ +.+.+|++||+.+|+.+. ..+...+ ..++|+|||+ .|+.++.|.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-----~~~~~~~~~~~~~wspDg~--~l~~~~~d~ 189 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-----VDVIEGGKYATPKWTPDSK--GFYYEWLPT 189 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-----SCCBSCCTTCCCEECTTSS--EEEEEECCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-----CcccCcccccceEEecCCC--EEEEEEecC
Confidence 3566789999999999999954 345689999999987541 1122222 6899999999 677777766
Q ss_pred c-------------EEEEeCCCCc----eeEEecCCCcceEEEeecccCCceEEEEEecCC----eEEEEecCCCCceee
Q 001367 466 T-------------IKVWDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVD 524 (1091)
Q Consensus 466 ~-------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~ 524 (1091)
. |++|++.++. ++.....|...+..+.+ ++||++|+..+.++ .|.+|+..++. ...
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~ 266 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGEKD-FRL 266 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTCSS-CEE
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEE
Confidence 5 9999999876 33333345566777777 55777887777665 56666654443 333
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee---eEEEecccccccceEEEEEcCCCCEEEEEeCCCe
Q 001367 525 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1091)
Q Consensus 525 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~ 601 (1091)
+..+...+....+ ++|. ++..+.....+..|++||+.++.. ...+..+. ...+..++++ ++..+++...|+.
T Consensus 267 l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 267 LVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDAT 341 (695)
T ss_dssp EEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTE
T ss_pred eecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCE
Confidence 3333444455555 6777 655554333468899999987753 33333321 2457788888 6667777888998
Q ss_pred EEEEECC-CCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC----CCeEEEEECCCCC
Q 001367 602 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1091)
Q Consensus 602 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 655 (1091)
.++|.+. +++....+..+. ...+..++++|+++.++.... .++|++||+.+++
T Consensus 342 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 342 SEVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8887654 355555555432 224667888999987774443 4789999998775
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.56 E-value=2.9e-12 Score=138.75 Aligned_cols=204 Identities=13% Similarity=0.070 Sum_probs=140.7
Q ss_pred eeEEEecCCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC-cceee
Q 001367 804 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS 879 (1091)
Q Consensus 804 v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~-~~~~~ 879 (1091)
...++|+|||+++.++. ++.|.++|+.+++.+.++..... ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 44678888888887775 47899999999999988864331 233433 566777788899988888876 55432
Q ss_pred eeccc----cCCeE-EEEEC-CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecc------CCCcCCCCCceEEEEcCCC
Q 001367 880 KLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ 947 (1091)
Q Consensus 880 ~l~~h----~~~V~-~l~~s-pdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~l~fs~dg 947 (1091)
....+ ..++. ..+|. ++|+++. .+.+|.|.+.|+.+........+... .+... .....+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence 21111 12222 24564 6776555 66689999999987543222222110 11111 235568889999
Q ss_pred CEEEEEe-----------cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCC-EEEEE-EcCCcEEEEeCCCCceEEE
Q 001367 948 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCR 1014 (1091)
Q Consensus 948 ~~la~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~-~l~t~-~~dg~v~iwd~~~~~~~~~ 1014 (1091)
+.+.+.. .++|.++|+.+++.+..+..+ ..+.+++|++|++ +|+++ ..++.|.++|..+++.+.+
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9988842 247999999999999987765 3688999999997 66664 4589999999999999977
Q ss_pred ee
Q 001367 1015 IL 1016 (1091)
Q Consensus 1015 ~~ 1016 (1091)
+.
T Consensus 370 i~ 371 (386)
T 3sjl_D 370 VN 371 (386)
T ss_dssp EC
T ss_pred ec
Confidence 76
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=5.4e-13 Score=145.80 Aligned_cols=278 Identities=11% Similarity=-0.024 Sum_probs=189.7
Q ss_pred CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCccccee
Q 001367 355 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434 (1091)
Q Consensus 355 ~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~ 434 (1091)
.+++|.+||..+++...... ...--.........+++. +++..++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~-------------~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~-- 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVF-------------YRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG-- 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHH-------------HHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred CCceEEEEECCCCEEhhhhH-------------hhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence 37899999999998654210 000000122446777774 45555566667899999999987655
Q ss_pred EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCC-----cceEEEeecccCCceEEEEEe-cC
Q 001367 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VD 508 (1091)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~d 508 (1091)
++. .......++++++++ ++++...++.|.+||..+++....+.... .....+++ . ++.++++.. .+
T Consensus 79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 343 345688999999985 56666578999999999998887765433 13455666 2 344455544 48
Q ss_pred CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC------ceEEEEEecCCceeeEEEecccccccceE
Q 001367 509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVS 582 (1091)
Q Consensus 509 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 582 (1091)
+.|.++|..+.+....+... .....++++|+|++++++...... .+.|.++|..+++....+.... .....
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~ 228 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPS 228 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCce
Confidence 89999999988776665543 344678999999977665432100 2679999999998877765432 23688
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccC-CCEEEEE----ECCCeEEEEECCCCCee
Q 001367 583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-GTLLAVI----ANENRIKILETPESNSV 657 (1091)
Q Consensus 583 ~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~----~~dg~i~iwd~~~~~~~ 657 (1091)
.++++|++++++++.. .|.+||..+++................++++|+ +.+.++. ..++.|.+|+.. ++.+
T Consensus 229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 9999999999988765 899999998876421111111234678999994 5555554 467899999998 7776
Q ss_pred cccc
Q 001367 658 DAAG 661 (1091)
Q Consensus 658 ~~~~ 661 (1091)
..+.
T Consensus 306 ~~i~ 309 (328)
T 3dsm_A 306 DEFY 309 (328)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=2.6e-12 Score=135.73 Aligned_cols=245 Identities=12% Similarity=0.102 Sum_probs=177.9
Q ss_pred EEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC-ccEEEEEECCCCCEEEEEECCCEEEEEEeeC
Q 001367 349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1091)
Q Consensus 349 llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 427 (1091)
++++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 779999999999999999998754 33344 4788999999999998 35778999999 7
Q ss_pred CcccceeEEEecc-ccCeeEEEEcCCCCceEEEEeeC-CCcEEEEeCCCCceeEEecC------CCcceEEEeecccCCc
Q 001367 428 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEG------HGAPVYSLCPHAKENI 499 (1091)
Q Consensus 428 ~~~~~~~~~~~~h-~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~ 499 (1091)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+.++.. +......+++ .++|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 76554 44443 34688999999999 7777776 778888884 7888777642 1122333444 5678
Q ss_pred eEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccccc--
Q 001367 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-- 577 (1091)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-- 577 (1091)
.++++...++.|..||.+ ++.+..+.... ...++.+.++|+.++++.. .+.|..+|..+|+.+..+......
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 78777776543 4556788899999988754 457999999999999888754311
Q ss_pred -ccceEEEEEcCCCCEEEEEeCC--------CeEEEEEC-CCCeeEEEEeCCCCCCCCceEE
Q 001367 578 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 578 -~~~v~~v~~~~~~~~l~~~s~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
-..+..+...++|+.+++.... +..+++.+ .+|+.+-.+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 1337788889999888776421 13345554 4677777776655544555543
No 192
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=2.3e-11 Score=131.37 Aligned_cols=285 Identities=11% Similarity=0.055 Sum_probs=193.4
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
+..+...+.+++++++|+ +.++...++.|.+||.. ++.... . ...+...+.+++++++|.
T Consensus 10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGE 69 (299)
T ss_dssp CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCC
Confidence 344556899999999998 55665567899999988 543321 0 223457899999999999
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE-ecCCCcce
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV 488 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v 488 (1091)
+.++...++.|..|+.. ++ ... ..+......+..+++.++|. ++++...++.|.+||. +++.... ...+...+
T Consensus 70 l~v~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEEEETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEeCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 88887778889999976 32 221 12223455789999999998 6777667889999998 5554432 23344567
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceee-ecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 567 (1091)
..+++. +++.+.++...++.|..||. +++.... .......+.+++++++|+..++... .+.|.+||. +++.
T Consensus 144 ~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 144 SFITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEI 215 (299)
T ss_dssp EEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCE
T ss_pred ceEEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcE
Confidence 888874 46667777777889999998 4443322 2333456789999999986665432 456999998 6654
Q ss_pred eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEE
Q 001367 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 647 (1091)
Q Consensus 568 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 647 (1091)
.. +... .....+..++++++|+..++...++.|..||. +++. ..+........+.++++ +++.+.++.. .+.+.
T Consensus 216 ~~-~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 216 TE-FKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG 289 (299)
T ss_dssp EE-EECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred EE-EECC-CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence 33 3221 12357889999999886666557889999998 4543 34433332345788899 8887655544 56777
Q ss_pred EEECCCC
Q 001367 648 ILETPES 654 (1091)
Q Consensus 648 iwd~~~~ 654 (1091)
.++..+.
T Consensus 290 ~~~~~~~ 296 (299)
T 2z2n_A 290 KLTLIKD 296 (299)
T ss_dssp EEEEC--
T ss_pred EEEcCcc
Confidence 7776543
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=1.6e-11 Score=135.65 Aligned_cols=281 Identities=12% Similarity=0.008 Sum_probs=185.8
Q ss_pred EEcCCCceEEEEEc-CCC---cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE-
Q 001367 341 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 415 (1091)
Q Consensus 341 ~fspdg~~llasg~-~dg---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 415 (1091)
...|++++++++-. ... +|.++|..+++.+.. +.....+ .++|||||++|.++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 44577875544432 223 889999999987643 2222233 899999999999986
Q ss_pred ---------CCCEEEEEEeeCCcccceeEEEe--cc---ccCeeEEEEcCCCCceEEEEee--CCCcEEEEeCCCCceeE
Q 001367 416 ---------SKHIVQLYAYHGGSDARQQLEID--AH---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 416 ---------~d~~i~iwd~~~~~~~~~~~~~~--~h---~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~ 479 (1091)
.++.|.+||..+.+.+.... +. .+ ...-..++|+|||+ +|+.+. .++.|.++| .+++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999998876554321 11 00 12345899999999 455554 257899999 9999887
Q ss_pred E-ecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-----CCCCc-EEEEEEcCCCCEEEEEecCCC
Q 001367 480 S-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKE 552 (1091)
Q Consensus 480 ~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-i~~~~~s~d~~~l~~~~~~~~ 552 (1091)
+ +.... . +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++....
T Consensus 162 ~~i~~~~-~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSSPT-C---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCCCc-e---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 64322 1 23333332 45667788999999999 665542221 11112 223456676665544433
Q ss_pred CceEEEEEecCCce--eeEEEeccc-------ccccceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeE
Q 001367 553 GESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLL 613 (1091)
Q Consensus 553 ~~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~v~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~ 613 (1091)
.+.+.+.|+.++. .+..+.... ........++++|+++.++++.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 4468888987553 222222100 00123445789999999888653 357999999999999
Q ss_pred EEEeCCCCCCCCceEEEccCCC-EEEEEE-CCCeEEEEECCCCCeecc
Q 001367 614 TTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA 659 (1091)
Q Consensus 614 ~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~ 659 (1091)
..+.... ....++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 9997654 368999999999 777776 489999999999988766
No 194
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=6.7e-13 Score=146.10 Aligned_cols=260 Identities=10% Similarity=0.057 Sum_probs=181.8
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
..|.+++|++++..++..+.++.++.|. ++. ...+..+...+.+++|+++|+ +++++..++.|.+||..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEP---WLEISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEE---EEEEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecCCccceeEEeecccCcccc---cce---eEEEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence 4577889999988888777888899992 222 224566777789999999998 77788889999999998887
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecC----CeEEEEecCCCCceeeec--CCCCcEEEEEEcCCCCEEEEEecC
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
.......+...+.+++++ +++.++++...+ +.|.+||.+.......+. .....+..++++|+|+.+++....
T Consensus 78 ~~~~~~~~~~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 78 IKRPFVSHKANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp EEEEEECSSSSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred EEEEeeCCCCCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence 665544566789999985 466777777666 689999988776553332 234568899999999887765421
Q ss_pred --CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE-eCCCeEEEEECCC-CeeEEEE------eCCC
Q 001367 551 --KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK-VQLLTTI------DAGG 620 (1091)
Q Consensus 551 --~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-s~dg~i~iwd~~~-~~~~~~~------~~~~ 620 (1091)
.+..+.|+.+|..+++....... . ..+..++|+|+++.++.+ +.++.|++|+..+ +..+..+ ....
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 231 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQN-I---SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 231 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEE-E---SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred cccCCCceEEEEeCCCCEEEEeecC-C---CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence 11245688888776654433322 2 457889999999876654 5678999999864 3322211 1111
Q ss_pred CCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccc------cceeeee
Q 001367 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD------NLRKLSV 672 (1091)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~ 672 (1091)
. ..+..++++++|+++++...++.|.+|+.. ++.+..+..+.. .+.++++
T Consensus 232 ~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~ 287 (333)
T 2dg1_A 232 H-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQF 287 (333)
T ss_dssp S-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred C-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEE
Confidence 1 245789999999988887788999999984 555544433322 4566666
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.54 E-value=7.7e-13 Score=143.23 Aligned_cols=287 Identities=13% Similarity=0.112 Sum_probs=192.5
Q ss_pred EEEcCCCceEEEEEcC----CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 340 MDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 340 v~fspdg~~llasg~~----dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
....||+++++++-.. ++.|.+.|..+++.+.. +.....+ . +++||||++|.++.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-------------------I~vG~~P-~-va~spDG~~lyVan 96 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGFLP-N-PVVADDGSFIAHAS 96 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECSSC-E-EEECTTSSCEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-------------------EECCCCC-c-EEECCCCCEEEEEc
Confidence 4557899877666543 68999999999988764 2112233 4 99999999988775
Q ss_pred ----------CCCEEEEEEeeCCcccceeEEEec--c---ccCeeEEEEcCCCCceEEEEee--CCCcEEEEeCCCCcee
Q 001367 416 ----------SKHIVQLYAYHGGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRT 478 (1091)
Q Consensus 416 ----------~d~~i~iwd~~~~~~~~~~~~~~~--h---~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~ 478 (1091)
.++.|.+||..+++.+..+. +.. + ...-..++|+|||++ ++.+. .++.|.++|+.+++.+
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEEE
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcEE
Confidence 35789999999987665332 211 0 124567999999995 44443 3789999999999999
Q ss_pred EEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCC-CCceeee----cCCCCcEE-EEEE-cCCCCEEEEEecCC
Q 001367 479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDY----DAPGLGCT-RMAY-SANGRRLFSCGTSK 551 (1091)
Q Consensus 479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~----~~~~~~i~-~~~~-s~d~~~l~~~~~~~ 551 (1091)
.++..... ...+ |. ..+.+++.+.||.+.+.++.. ++..... .....++. ...| .++|++++...
T Consensus 174 ~tI~v~g~---~~~~-P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--- 245 (386)
T 3sjl_D 174 RMLDVPDC---YHIF-PT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--- 245 (386)
T ss_dssp EEEECCSE---EEEE-EE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT---
T ss_pred EEEECCCc---ceee-cC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC---
Confidence 88853221 1111 22 234666888899988888876 3332211 11112221 2355 36776655432
Q ss_pred CCceEEEEEecCCce--eeEEEecc-------cccccceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCee
Q 001367 552 EGESFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQL 612 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~v~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~ 612 (1091)
.+.+++.|..++. ....+.-. .........++++++++.++.... .+.|.+.|+.+++.
T Consensus 246 --~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 246 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 4569999987654 33333200 000123445778999999988642 25799999999999
Q ss_pred EEEEeCCCCCCCCceEEEccCCC-EEEEEEC-CCeEEEEECCCCCeecccccc
Q 001367 613 LTTIDAGGGLPENPRICFNKNGT-LLAVIAN-ENRIKILETPESNSVDAAGVL 663 (1091)
Q Consensus 613 ~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~-dg~i~iwd~~~~~~~~~~~~~ 663 (1091)
+..+.... .+..+++++|++ +|++... ++.|.++|..+++.+..+...
T Consensus 324 ~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 324 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred EEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 99987653 368999999997 6766554 899999999999888777643
No 196
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=7.6e-09 Score=127.70 Aligned_cols=536 Identities=11% Similarity=0.045 Sum_probs=310.4
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC--CCCEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGV 413 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las 413 (1091)
.|.++...++|..| -.|+.++.+..||..+++...... . .. .. ..-....|.++.... +|.+. .
T Consensus 67 ~I~~i~~d~~g~~l-Wigt~~~Gl~~~d~~~~~f~~~~~----~-----~~-~~--~~l~~~~i~~i~~d~~~~g~lw-i 132 (781)
T 3v9f_A 67 ELNEVYTDPVQPVI-WIATQRAGLNAYNYETQSFSVYQY----N-----PE-DP--QSLITNDVTHITSSVQAGKGLW-V 132 (781)
T ss_dssp CEEEEEECSSSSEE-EEEESSSCEEEEETTTTEEEEECC----C-----TT-CS--SSCSCSCEEEEEECSSTTSEEE-E
T ss_pred ccceEEEcCCCCEE-EEEeCCCCcceECCCCCeEEeecc----c-----cC-CC--CCcccCcceEEEecCccCCCEE-E
Confidence 79999999998712 345566579999988765432100 0 00 00 000124688998887 66544 4
Q ss_pred EECCCEEEEEEeeCCcccceeEEEec------cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec-----
Q 001367 414 AYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE----- 482 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----- 482 (1091)
++.++.|..||..+++.. .+.. ....|.++...++|. +..++.++-|..||..+++...-..
T Consensus 133 ~t~~~gl~~~~~~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 205 (781)
T 3v9f_A 133 CTYYRGIEYLDIATGKFT----HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNP 205 (781)
T ss_dssp EESSSCEEEEETTTTEEE----EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-----
T ss_pred EECCCCeeEEECCCCeEE----eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCc
Confidence 553444888888765321 1211 124588888877776 4446656568899987765432211
Q ss_pred --CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeec-------CCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 483 --GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 483 --~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
.....|.++.. +.++. |..++.+ -+.+||..+........ .....|.++...++|...+.....
T Consensus 206 ~~l~~~~i~~i~~--d~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~--- 278 (781)
T 3v9f_A 206 NSLPGNDVRCIYK--DTNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELN--- 278 (781)
T ss_dssp ---CCSSEEEEEE--CTTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSS---
T ss_pred ccCCCCceeEEEE--cCCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCC---
Confidence 11345777766 34444 4445555 58888876543322111 124468899988888766543211
Q ss_pred ceEEEEEecCCceeeEEEe-----------cccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe-----
Q 001367 554 ESFLVEWNESEGAIKRTYQ-----------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID----- 617 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~-----------~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~----- 617 (1091)
-|.++|..++....... ........|.++...++|. +..|+.++-|..++..++.......
T Consensus 279 --Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 355 (781)
T 3v9f_A 279 --GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQM 355 (781)
T ss_dssp --CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CC
T ss_pred --CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccc
Confidence 28889887765432221 0112245789999888775 6667777778999887654433211
Q ss_pred --CCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCC
Q 001367 618 --AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKE 695 (1091)
Q Consensus 618 --~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~ 695 (1091)
..-....|.+++..++|. |.+|+.++-|..|+..++.... +. .+
T Consensus 356 ~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~--------------------------------~~ 401 (781)
T 3v9f_A 356 NESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIY-NK--------------------------------EN 401 (781)
T ss_dssp CSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEEC-C-----------------------------------
T ss_pred ccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEE-cc--------------------------------CC
Confidence 111123577888877776 5566766668888865331110 00 00
Q ss_pred CCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceee
Q 001367 696 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 775 (1091)
Q Consensus 696 ~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 775 (1091)
.......|.++...++|. |..++.++.+..++.....
T Consensus 402 ---------------------------------~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~--------- 438 (781)
T 3v9f_A 402 ---------------------------------RELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKK--------- 438 (781)
T ss_dssp -----------------------------------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCE---------
T ss_pred ---------------------------------CCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCc---------
Confidence 000234677888877887 4445555556666543221
Q ss_pred ccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCC-----CCCeEEEEE
Q 001367 776 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATSLAF 850 (1091)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~ 850 (1091)
....... ......|.+++..++|.+.+... +.+..+|..+++........ ...|.+++.
T Consensus 439 --------------~~~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 502 (781)
T 3v9f_A 439 --------------FQIIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ 502 (781)
T ss_dssp --------------EEECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred --------------EEEeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence 1110000 01346788999988888766555 67899998876554332222 457899999
Q ss_pred cCCCCcEEEEEeCCCeEEEEeccCcceeeeecc---ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001367 851 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 927 (1091)
Q Consensus 851 s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~ 927 (1091)
.+ ++.+.+ |+.++-+..||..+++...-... ....|.++...++|++.++. .+|.|..||..+++.. .+..
T Consensus 503 d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~---~~~~ 576 (781)
T 3v9f_A 503 DS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ---VFQR 576 (781)
T ss_dssp CT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE---EECG
T ss_pred cC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE---Eccc
Confidence 88 676555 55544488898876654322111 24578999999999877654 4675488888775532 2222
Q ss_pred cCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCC-----ccCEEEEEEeeCCCEEEEEEcCCcEE
Q 001367 928 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-----SVPISQATFSCDCRMVFTSFVDGTLS 1002 (1091)
Q Consensus 928 ~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h-----~~~v~~v~fs~dg~~l~t~~~dg~v~ 1002 (1091)
..+... ..+.++...++|.+.+++.. .|..++..+++.. .+.... .-...++...+||.+++ |+.+| +.
T Consensus 577 ~~gl~~--~~i~~i~~d~~g~lW~~t~~-Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~ 650 (781)
T 3v9f_A 577 KEGLPN--THIRAISEDKNGNIWASTNT-GISCYITSKKCFY-TYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING-LC 650 (781)
T ss_dssp GGTCSC--CCCCEEEECSSSCEEEECSS-CEEEEETTTTEEE-EECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-EE
T ss_pred cCCCCC--ceEEEEEECCCCCEEEEcCC-ceEEEECCCCceE-EecccCCccccccccCceEECCCCEEEE-ECCCc-eE
Confidence 233222 35789999999998777644 4777887755432 221111 11234677778888655 66777 55
Q ss_pred EEeCC
Q 001367 1003 IHEAS 1007 (1091)
Q Consensus 1003 iwd~~ 1007 (1091)
.++..
T Consensus 651 ~f~p~ 655 (781)
T 3v9f_A 651 FFNPD 655 (781)
T ss_dssp EECSC
T ss_pred EEChh
Confidence 56644
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.53 E-value=3.2e-12 Score=137.81 Aligned_cols=238 Identities=11% Similarity=0.056 Sum_probs=168.8
Q ss_pred ecCCCccEEEEEECCCCC-EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEE
Q 001367 392 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 470 (1091)
Q Consensus 392 ~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw 470 (1091)
+..+.....+++|+|+|+ +++++..++.|..|+..++ .. .+..+...+.+++++++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445667788999999998 7778888899999999886 33 4556777899999999998 67777667899999
Q ss_pred eCCCCceeEEecCC----CcceEEEeecccCCceEEEEEec-----------------CCeEEEEecCCCCceeeecCCC
Q 001367 471 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG 529 (1091)
Q Consensus 471 d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~ 529 (1091)
|..+++........ ...+..++++ ++|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 98888765433221 1245667774 57777776321 2345555444 4444444555
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC-Ccee---eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iw 605 (1091)
.....++|+|+++.+++... ++.|++|++. +++. ...+.. ....+..++++++|+..++. ++.|.+|
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 56789999999999844432 5679999986 5554 333321 23566789999999865555 8899999
Q ss_pred ECCCCeeEEEEeCCCCCCCCceEEE-ccCCCEEEEEECCCeEEEEECCCC
Q 001367 606 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
+.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 986 777777766543 688999 5899999998876 4555566544
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=2.1e-12 Score=141.14 Aligned_cols=272 Identities=8% Similarity=0.032 Sum_probs=182.3
Q ss_pred cccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccC
Q 001367 705 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 784 (1091)
Q Consensus 705 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1091)
.+++|.++|..+..-...................+++. +++..++...++.+.+||...
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t-------------------- 73 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINT-------------------- 73 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTT--------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcc--------------------
Confidence 36778888876433211110000011122345667774 445455555678888887543
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEE-eCCeEEEEEccCceeEEEecCCC-----CCeEEEEEcCCCCcEE
Q 001367 785 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVI 858 (1091)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~~~~~l 858 (1091)
++.+.... .......++++++++..++. .++.|.+||..+++....+.... .....+++ . +++++
T Consensus 74 --~~~~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 74 --FKEVGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp --CCEEEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred --cEEEEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence 33223221 23567899999999655555 37999999999999887766433 14566777 4 66666
Q ss_pred EEEe-CCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCC----------CcEEEEEcCCCceeeeeeeec
Q 001367 859 AIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQT 927 (1091)
Q Consensus 859 a~g~-~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D----------g~i~vwd~~~~~~~~~~~~~~ 927 (1091)
++.. .++.|.++|+.+++.+..+... .....++++|+|++++++..+ +.|.++|..+++... .+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence 6554 4889999999999888777643 345789999999988876654 789999998876432 2222
Q ss_pred cCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeee-eecCCccCEEEEEEee-CCCEEEEE----EcCCcE
Q 001367 928 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSC-DCRMVFTS----FVDGTL 1001 (1091)
Q Consensus 928 ~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~-~~~~h~~~v~~v~fs~-dg~~l~t~----~~dg~v 1001 (1091)
..+ .....++|+||++.|.++.. .|.+||..+++.... +...+......++++| ++..+++. ..++.|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 222 14679999999999988655 999999998876432 2222246788999999 55555555 568899
Q ss_pred EEEeCCCCceEEEee
Q 001367 1002 SIHEASNLEVQCRIL 1016 (1091)
Q Consensus 1002 ~iwd~~~~~~~~~~~ 1016 (1091)
.+||.. |+.+.++.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 88887765
No 199
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.53 E-value=9.2e-13 Score=146.00 Aligned_cols=241 Identities=12% Similarity=0.096 Sum_probs=158.9
Q ss_pred ccEEEEEECCCCCEEEEEE---------CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC---
Q 001367 397 VSVNRVVWSPDGSLLGVAY---------SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--- 464 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~---------~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d--- 464 (1091)
..+..+++ ||+++|... .++.|.+||+.+++.. .+ ..+..++|||||+ .|+..+.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----~l----~~~~~~~~SpDg~--~la~~~~~~~~ 82 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR----FI----ENATMPRISPDGK--KIAFMRANEEK 82 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE----EE----ESCEEEEECTTSS--EEEEEEEETTT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE----Ec----ccCCCeEECCCCC--EEEEEEeccCC
Confidence 46777888 999998753 2567999999887532 23 4688999999999 45555432
Q ss_pred C--cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC---------------------------CeEEEEe
Q 001367 465 K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---------------------------GKIKAWL 515 (1091)
Q Consensus 465 ~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------------------------g~i~iwd 515 (1091)
+ .|.+||+.+++.......+ . +..++|+ +|++.|+.++.+ ..|.+||
T Consensus 83 ~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~ws--pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d 158 (347)
T 2gop_A 83 KVSEIWVADLETLSSKKILEAK-N-IRSLEWN--EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD 158 (347)
T ss_dssp TEEEEEEEETTTTEEEEEEEES-E-EEEEEEC--TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred CcceEEEEECCCCceEEEEcCC-C-ccceeEC--CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence 3 4888898888765544433 3 8888885 467777777642 5689999
Q ss_pred cCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC----C-ceEEEEEecCCceeeEEEecccccccceEEEEEcCCC
Q 001367 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE----G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590 (1091)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~----~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~ 590 (1091)
+.+++....+.. . .+..++|+||| .++++..+.. . ...|+++| +++....... ..+..+ +|+|
T Consensus 159 ~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-----~~~~~~--spdg 226 (347)
T 2gop_A 159 TESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-----VSFYAV--DSDG 226 (347)
T ss_dssp TTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-----ESEEEE--EECS
T ss_pred CCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-----cceeeE--CCCC
Confidence 987765233333 2 67889999999 6666644321 1 34577777 5554333322 234433 8999
Q ss_pred CEEEEEeCC--------CeEEEEECCCCeeEEEEeCCCCCCCCce-EEEccCCCEEEEEECCCeEEEEECCCCCeecccc
Q 001367 591 DQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 591 ~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
++++.++.+ ..|++|| +++.......+ ...+.. +.|+ ++ ++++++.++.+++| +.+++.. .+.
T Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~--~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~ 298 (347)
T 2gop_A 227 ERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV--DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIA 298 (347)
T ss_dssp SCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC--CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEE
T ss_pred CEEEEEEccccCCccccceEEEEC--CCceEeccccC--CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEe
Confidence 999887644 4688888 55543333222 224565 8899 88 88999999999999 8755443 333
Q ss_pred cccccceeeeec
Q 001367 662 VLSDNLRKLSVN 673 (1091)
Q Consensus 662 ~~~~~v~~~~~~ 673 (1091)
.+...+.+++++
T Consensus 299 ~~~~~v~~~~~s 310 (347)
T 2gop_A 299 KGRHWIMGFDVD 310 (347)
T ss_dssp CSSSEEEEEEES
T ss_pred cCCCeEEeeeee
Confidence 335567777773
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=1.1e-10 Score=125.80 Aligned_cols=236 Identities=11% Similarity=0.009 Sum_probs=162.8
Q ss_pred ccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCC
Q 001367 734 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 813 (1091)
Q Consensus 734 ~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 813 (1091)
..+..+++.++|...++...++.+..|+.... .....++ .....+..+++.++|
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------------------------~~~~~~~--~~~~~~~~i~~~~~g 110 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKKGI------------------------IKEYTLP--NPDSAPYGITEGPNG 110 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSC------------------------EEEEECS--STTCCEEEEEECTTS
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCCCc------------------------EEEEeCC--CcCCCceeeEECCCC
Confidence 35678889999987776666788888774310 1111111 134568899999999
Q ss_pred CEEEEEe-CCeEEEEEccCceeEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee-eccccCCeEE
Q 001367 814 AYLFSAS-GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTG 890 (1091)
Q Consensus 814 ~~la~~~-dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~-l~~h~~~V~~ 890 (1091)
+++++.. ++.|..||. +++.... .......+..+++++ +++++++...++.|..||. +++.... +..+...+.+
T Consensus 111 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 187 (299)
T 2z2n_A 111 DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVG 187 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCccee
Confidence 8888775 688999998 5554432 233456789999999 7888777777789999998 6665432 3444567889
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCccee
Q 001367 891 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCL 969 (1091)
Q Consensus 891 l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~~ 969 (1091)
++++++|+++++...++.|.+||. ++.... +... ... ..+..++++++|++.++. .++.|..||. +++.
T Consensus 188 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~- 257 (299)
T 2z2n_A 188 ITKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIP-TPN---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII- 257 (299)
T ss_dssp EEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-STT---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-
T ss_pred EEECCCCCEEEEccCCceEEEECC-CCcEEE---EECC-CCC---CCceeEEECCCCCEEEeccCCceEEEECC-CCce-
Confidence 999999998887777889999999 554321 2111 111 258899999999977775 5689999998 4543
Q ss_pred eee-ecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCc
Q 001367 970 KQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1010 (1091)
Q Consensus 970 ~~~-~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~ 1010 (1091)
..+ ...+...+.++++ ++|.++++.. .+.+..++..+++
T Consensus 258 ~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 258 EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 332 3344567899999 9888777654 5677777776653
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=4e-13 Score=163.67 Aligned_cols=249 Identities=9% Similarity=-0.069 Sum_probs=162.9
Q ss_pred cCCCCcEEEEEcCCCceEEEEE----cCCCcEEEEEcCCCCce-eeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg----~~dg~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
+|...+..++|||||++|+++. +.+.+|++||+.+|+.+ .. . +.+. ....++|+|
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp 177 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP 177 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence 5666799999999999654443 33468999999999865 21 0 1111 126789999
Q ss_pred CCCEEEEEECCCE-------------EEEEEeeCCcccc-eeEEEeccccCeeEEEEcCCCCceEEEEeeCCC----cEE
Q 001367 407 DGSLLGVAYSKHI-------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK 468 (1091)
Q Consensus 407 dg~~las~~~d~~-------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~----~i~ 468 (1091)
||+.|+.++.|.. |++|++.++.... .......|...+..+.|||||+. |+.++.++ .|.
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY 255 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence 9999999988766 9999999876321 11122345567899999999995 44444344 677
Q ss_pred EEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEe---cCCeEEEEecCCCCc---eeeecCC-CCcEEEEEEcCCC
Q 001367 469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG 541 (1091)
Q Consensus 469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~-~~~i~~~~~s~d~ 541 (1091)
+||..+++ ...+..+...+....+ +++.+++... .++.|.+||+++... ...+... ...+..++++ ++
T Consensus 256 ~~~~~~~~-~~~l~~~~~~~~~~~~---~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~ 330 (695)
T 2bkl_A 256 WKRPGEKD-FRLLVKGVGAKYEVHA---WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG 330 (695)
T ss_dssp EECTTCSS-CEEEEECSSCCEEEEE---ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred EEcCCCCc-eEEeecCCCceEEEEe---cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence 77765554 4445455555555554 2445444443 257899999987653 3333333 4467788887 55
Q ss_pred CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe----CCCeEEEEECCCCee
Q 001367 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 612 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 612 (1091)
..+++... ++...|.+++.. ++..+.+..+. ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 56666554 234456666654 44455555432 25677788899988777432 357899999998874
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=3.5e-12 Score=134.71 Aligned_cols=222 Identities=8% Similarity=-0.019 Sum_probs=163.5
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeecccc-CCe
Q 001367 812 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRV 888 (1091)
Q Consensus 812 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V 888 (1091)
.++.|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +|+.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456777776 7999999999999999998766 4789999999 888888 45778999999 899998887653 478
Q ss_pred EEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecc-CCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCC
Q 001367 889 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 965 (1091)
Q Consensus 889 ~~l~~spdg~~las~s~-Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~ 965 (1091)
.++.+.+||+++++.+. ++.|..+|.+ ++......+... .++. .....+++.++|+++++. .++.|..||.+
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 89999999999999887 7777777764 333222221111 1111 135567889999999985 67899999998
Q ss_pred cceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeE
Q 001367 966 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1045 (1091)
Q Consensus 966 ~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1045 (1091)
|+.+..+..+ ..+.++.+.++|..+++++.+++|..+|..+|+.+-++.... ++.. .-..+..++..+ +|.++
T Consensus 155 G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~~~---~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IEGV---QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SBSC---CCSEEEEEEECT-TSCEE
T ss_pred CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CCCc---cccccccceEcC-CCCEE
Confidence 9988876542 355678889999999988888899999999999987776221 1110 012334556666 46777
Q ss_pred EEEe
Q 001367 1046 AVGL 1049 (1091)
Q Consensus 1046 ~~g~ 1049 (1091)
++..
T Consensus 228 v~~~ 231 (276)
T 3no2_A 228 ICNW 231 (276)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6663
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.49 E-value=3.1e-12 Score=135.87 Aligned_cols=241 Identities=8% Similarity=-0.046 Sum_probs=165.9
Q ss_pred CcEEEEEcCCCceEEE-EEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 336 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 336 ~V~~v~fspdg~~lla-sg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
...+++++|+|+ +++ +...++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 778999999998 666 556779999999766543211 11233567889999999966665
Q ss_pred ECCCEEEEEEeeCCcccceeEEEe-ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEee
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 493 (1091)
. ++.|.+||..++... .+. .....+..++++++|+ ++++...++.|.+|+..+.............+..+++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765321 122 2335688999999998 6777777889999986555443322233345677888
Q ss_pred cccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEec
Q 001367 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1091)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1091)
++ ++.++++...++.|.+||................+.+++++++|..+++... ++.|.+|+..+.........
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence 54 5667777777899999998765544333333356889999999976665533 45699999876543322111
Q ss_pred ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 001367 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612 (1091)
Q Consensus 574 ~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 612 (1091)
. ...+.+++++++|+.+++...++.|+++++...+.
T Consensus 232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 1 24688999999998778888899999999876543
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=2.3e-12 Score=158.11 Aligned_cols=247 Identities=10% Similarity=0.053 Sum_probs=163.2
Q ss_pred CCCccEEEEEECCCCCEEEEEECC-----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC---
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 465 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--- 465 (1091)
+|...+..++|||||++||.++.+ ..|++||+.+|+.+.. ..+...+..++|+|| + .|+.++.++
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 345578999999999999988654 4699999999875431 112223468899999 8 555555544
Q ss_pred -----------cEEEEeCCCCce--eEEecC--CCcceEEEeecccCCceEEEEEecCC-----eEEEEecCCC--Ccee
Q 001367 466 -----------TIKVWDAVTGSR--TYSFEG--HGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV 523 (1091)
Q Consensus 466 -----------~i~iwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~--~~~~ 523 (1091)
.|++|++.++.. ...+.. +...+..+.+ ++||++|+..+.++ .|++||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 389999987753 223332 3334677777 56788888777554 7999999876 3133
Q ss_pred eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc--eeeEEEecccccccceEEEEEcCCCCEEEEEeCCCe
Q 001367 524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 601 (1091)
Q Consensus 524 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~ 601 (1091)
.+..+....... ++|+|+.|+..+..+..+..|++||+.++ .....+..+. ..+..+.+. ++..+++...++.
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence 343333344444 34899999888765444778999999875 3333343333 456677777 4566677888888
Q ss_pred EEEEECC-CCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC----CCeEEEEECCCCC
Q 001367 602 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 655 (1091)
Q Consensus 602 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 655 (1091)
.++|.++ ++.....+..+. ...+..+.++|+++.++.... .++|++||+.+++
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7777544 455556555432 234678889999886664332 4789999998764
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.49 E-value=1.4e-11 Score=136.15 Aligned_cols=205 Identities=14% Similarity=0.079 Sum_probs=141.9
Q ss_pred eEEEecCCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeee-
Q 001367 805 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK- 880 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~- 880 (1091)
..++++|||++++++. ++.|.+.|+.+++.+.++..... ....|++.+.+++.+.||++.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4567888888888875 36899999999999988874321 233442445666677788888888765554422
Q ss_pred ---eccccCCe-EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCc----CCCCCceEEEEcCCCCEEEE
Q 001367 881 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 881 ---l~~h~~~V-~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~l~fs~dg~~la~ 952 (1091)
+.....++ ..+.|+++++.++..+..+.|.+.|+.+........+....... ..+.....++|+||++.+.+
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22112222 23578999988888888899999999765432211111110000 00012334799999998777
Q ss_pred Ee-----------cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCC-EEEEEE-cCCcEEEEeCCCCceEEEe
Q 001367 953 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 953 ~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~-~l~t~~-~dg~v~iwd~~~~~~~~~~ 1015 (1091)
.. ++.|.++|..+.+.+..+..+ .....++|+|||+ +++++. .++.|.++|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 42 357999999999999887654 3588999999999 888887 5899999999999999876
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.47 E-value=2.6e-10 Score=123.11 Aligned_cols=280 Identities=10% Similarity=0.027 Sum_probs=189.8
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEE
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 411 (1091)
.....+.+++++++|+ +.++...++.|.+||.. ++.... . +..+...+.++++.++|++.
T Consensus 17 ~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~---~---------------~~~~~~~~~~i~~~~~g~l~ 76 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF---E---------------VPTPDAKVMCLIVSSLGDIW 76 (300)
T ss_dssp STTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE---E---------------CSSTTCCEEEEEECTTSCEE
T ss_pred CCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE---E---------------CCCCCCcceeEEECCCCCEE
Confidence 3345889999999998 66666677999999987 553321 0 22344679999999999988
Q ss_pred EEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE-EecCCCcceEE
Q 001367 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYS 490 (1091)
Q Consensus 412 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~ 490 (1091)
++...++.|..||.. ++. . ...+......+..+++.++|+ ++++...++.|..||.. ++... .+......+..
T Consensus 77 v~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 77 FTENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp EEETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred EEecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 877667889999987 443 2 112233446789999999998 66766667899999977 65542 23334456778
Q ss_pred EeecccCCceEEEEEecCCeEEEEecCCCCcee-eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE
Q 001367 491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1091)
Q Consensus 491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1091)
+++. +++.+.++...++.|..++. .++... ........+..++++++|+..++... .+.|.++|. +++...
T Consensus 151 i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 151 ITLG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISE 222 (300)
T ss_dssp EEEC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEE
T ss_pred EEEC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEE
Confidence 8874 45666666666888999988 333322 22233456889999999986665532 446999998 554433
Q ss_pred EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEE
Q 001367 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 649 (1091)
Q Consensus 570 ~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 649 (1091)
..... ....+.+++++++++..++...++.|..|+. +++.. .+........+.+++++++|++.++.. . .|..+
T Consensus 223 ~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 223 YDIPT--PNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp EECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred EECCC--CCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 21111 1356889999999886666656789999998 45443 333332234578999999988555444 4 67666
Q ss_pred EC
Q 001367 650 ET 651 (1091)
Q Consensus 650 d~ 651 (1091)
+.
T Consensus 297 ~p 298 (300)
T 2qc5_A 297 NL 298 (300)
T ss_dssp EE
T ss_pred CC
Confidence 64
No 207
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.46 E-value=9e-12 Score=132.29 Aligned_cols=240 Identities=10% Similarity=-0.057 Sum_probs=165.6
Q ss_pred cEEEEEECCCCCEEE-EEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 398 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 398 ~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
...+++++++|++++ +...++.|.+|+..++.... ....+...+.+++++++|+ ++++.. ++.|.+||..++.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 788999999999777 44677899999976653211 1123335688999999998 566555 8899999976554
Q ss_pred eeEEec-CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 477 RTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 477 ~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
. ..+. .....+..+++.+ ++.++++...++.|.+|+..+.............+.+++++++|+.+++... .+
T Consensus 99 ~-~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~ 171 (270)
T 1rwi_B 99 Q-TVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 171 (270)
T ss_dssp C-EECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GT
T ss_pred E-eeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CC
Confidence 3 3333 2335678888854 6677777778899999976554433322223345778999999986665532 45
Q ss_pred EEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCC
Q 001367 556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 635 (1091)
Q Consensus 556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1091)
.|.+||..+........... ..+..++++++|..+++...++.|.+|+..+..... ... .+...+..++++++|+
T Consensus 172 ~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 172 RVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRT 246 (270)
T ss_dssp EEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCC
T ss_pred EEEEEecCCCceEeecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCC
Confidence 79999988765443322222 568899999999766666678899999987654433 221 1223578999999999
Q ss_pred EEEEEECCCeEEEEECCCCC
Q 001367 636 LLAVIANENRIKILETPESN 655 (1091)
Q Consensus 636 ~l~~~~~dg~i~iwd~~~~~ 655 (1091)
++++...++.|++++....+
T Consensus 247 l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 247 VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEGGGTEEEEECCCGGG
T ss_pred EEEEECCCCEEEEEcCCCcc
Confidence 88888889999999987553
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.44 E-value=1.3e-11 Score=136.34 Aligned_cols=281 Identities=11% Similarity=0.094 Sum_probs=189.8
Q ss_pred CCCceEEEEEcCC----CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE----
Q 001367 344 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---- 415 (1091)
Q Consensus 344 pdg~~llasg~~d----g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---- 415 (1091)
|+++++.++...+ ++|.+.|..+++.+.+.. --..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~-------------------vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD-------------------GGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE-------------------ECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE-------------------CCCCC--ceEECCCCCEEEEEecccc
Confidence 4666665665544 799999999999886522 12234 799999999998876
Q ss_pred ------CCCEEEEEEeeCCcccceeEEEe--c---cccCeeEEEEcCCCCceEEEEee--CCCcEEEEeCCCCceeEEec
Q 001367 416 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE 482 (1091)
Q Consensus 416 ------~d~~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~ 482 (1091)
.++.|.++|..+++.+..+. +. . .......++|+|||++ ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987665332 22 0 1123567899999994 55544 36889999999999988876
Q ss_pred CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee----ecCCCCc-EEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
.... ....+... ..+++.+.||.+.+.+....+.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 4221 12222222 4566677788888777744433321 1212222 123567899888777654 4569
Q ss_pred EEEecCCceee--EEEecc-----c--ccccceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeEEEEeC
Q 001367 558 VEWNESEGAIK--RTYQGL-----Q--LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 558 ~iwd~~~~~~~--~~~~~~-----~--~~~~~v~~v~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~ 618 (1091)
++.|...+... ..+... . ........++++|+++++++... .+.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111110 0 00011223689999998887642 35799999999999999876
Q ss_pred CCCCCCCceEEEccCCC-EEEEEE-CCCeEEEEECCCCCeeccc
Q 001367 619 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA 660 (1091)
Q Consensus 619 ~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 660 (1091)
... ...++|+||++ ++++.. .++.|.++|..+.+.+..+
T Consensus 369 g~~---P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 GHE---IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEE---ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCC---cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 542 58999999999 888888 5899999999999888765
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=7.4e-12 Score=153.58 Aligned_cols=248 Identities=11% Similarity=0.016 Sum_probs=158.1
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcCCC----cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+|...+..++|||||++|+.+.+.+| .|++||+.+|+.+.. . . +...+..++||||
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-----------------~--~~~~~~~~~wspD 219 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-----------------L--KWVKFSGLAWLGN 219 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-----------------E--EEEESCCCEESTT
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-----------------C--CCceeccEEEECC
Confidence 34457889999999996655544334 599999999987542 0 0 1122357899999
Q ss_pred CCEEEEEECCCE--------------EEEEEeeCCcccceeEEEe--ccccCeeEEEEcCCCCceEEEEeeC-----CCc
Q 001367 408 GSLLGVAYSKHI--------------VQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGD-----DKT 466 (1091)
Q Consensus 408 g~~las~~~d~~--------------i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~~~l~s~~~-----d~~ 466 (1091)
+.|+.++.++. |++|++.++...... .+. .+...+..+.|||||++ |+..+. ...
T Consensus 220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP-VFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNT 295 (741)
T ss_dssp -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCE
T ss_pred -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE-EeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcce
Confidence 99999876553 889998776532211 222 23345889999999994 444443 348
Q ss_pred EEEEeCCCC--ceeEEecCCCcceEEEeecccCCceEEEEEec----CCeEEEEecCCCC-c-eeeecCCCCcEEEEEEc
Q 001367 467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-A-RVDYDAPGLGCTRMAYS 538 (1091)
Q Consensus 467 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~-~~~~~~~~~~i~~~~~s 538 (1091)
|.+||+.++ ++...+..+...+....+ +++..|+..+. ++.|.+||+++.. . ...+..+...+..++++
T Consensus 296 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 296 VHVARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA 372 (741)
T ss_dssp EEEEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred EEEEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence 999999887 424555555555544432 35566666665 3459999988742 2 33344444456677776
Q ss_pred CCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE-e---CCCeEEEEECCCCee
Q 001367 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-G---DDHVIKIWDMNKVQL 612 (1091)
Q Consensus 539 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-s---~dg~i~iwd~~~~~~ 612 (1091)
++..+++... ++...|++++.. +...+.+.... ...+..+.++|+++.++.. + ..++|++||+.+++.
T Consensus 373 -~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 -GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp -BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred -CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4445555543 335556667764 44555554322 3578889999998866643 2 357899999998873
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.40 E-value=1.2e-09 Score=117.74 Aligned_cols=277 Identities=9% Similarity=0.039 Sum_probs=187.0
Q ss_pred ccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC
Q 001367 732 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 811 (1091)
Q Consensus 732 ~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 811 (1091)
....+.++++.++|...++...++.+.+|+.. .. .....+. .....+..+++.+
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-----------------------~~~~~~~--~~~~~~~~i~~~~ 71 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-----------------------IKEFEVP--TPDAKVMCLIVSS 71 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-----------------------EEEEECS--STTCCEEEEEECT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-----------------------eEEEECC--CCCCcceeEEECC
Confidence 34578899999999977776677888888744 11 1111111 1345688999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEE-EecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceee-eeccccCCe
Q 001367 812 NDAYLFSAS-GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRV 888 (1091)
Q Consensus 812 dg~~la~~~-dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~-~l~~h~~~V 888 (1091)
+|.+.++.. ++.|..||.. ++... ........+..+++.+ +++++++...++.|..|+.. ++... .+......+
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCc
Confidence 999887766 5889999987 55432 2222346789999999 78888777778899999987 65442 233345678
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcc
Q 001367 889 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELT 967 (1091)
Q Consensus 889 ~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~ 967 (1091)
.++++.++|+++++...++.|..++. +++... +... ... ..+..++++++|.+.++. ..+.|.+||. +++
T Consensus 149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TNA---AAPVGITSGNDGALWFVEIMGNKIGRITT-TGE 219 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-STT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred eeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CCC---CCcceEEECCCCCEEEEccCCCEEEEEcC-CCc
Confidence 99999999997777766788999998 444221 2211 111 257899999999887775 4568999998 555
Q ss_pred eeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEE
Q 001367 968 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1047 (1091)
Q Consensus 968 ~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~ 1047 (1091)
........+...+.+++++++|++.++...++.|..|+. ++... .+. ++.. .. .+..++.+|+ |.++++
T Consensus 220 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~~~--~~--~~~~i~~~~~-g~l~v~ 288 (300)
T 2qc5_A 220 ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQTE--NA--EPHGITFGKD-GSVWFA 288 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CCST--TC--CCCCEEECTT-SCEEEE
T ss_pred EEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CCcc--CC--ccceeEeCCC-CCEEEE
Confidence 443323334567899999999997776656789999998 45443 222 1111 11 2345678884 665554
Q ss_pred EecCCcEEEEec
Q 001367 1048 GLTNGEVYVIEP 1059 (1091)
Q Consensus 1048 g~~dg~v~~w~~ 1059 (1091)
.. . .|..+++
T Consensus 289 ~~-~-~i~~~~p 298 (300)
T 2qc5_A 289 LK-C-KIGKLNL 298 (300)
T ss_dssp CS-S-EEEEEEE
T ss_pred cc-C-ceEEeCC
Confidence 44 4 7777765
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.37 E-value=1.6e-10 Score=125.62 Aligned_cols=250 Identities=13% Similarity=0.101 Sum_probs=164.2
Q ss_pred ccCCCCcEEEEEcCCCceEEEE-------EcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llas-------g~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.+.-....+++|+++|+ ++++ +..++.|.+||..+++.... . .....++...+.+++
T Consensus 14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~------------~~~~~~~~~~~~~i~ 77 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C------------KPEVNGYGGIPAGCQ 77 (314)
T ss_dssp ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E------------CCEETTEECCEEEEE
T ss_pred hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E------------ecccCCCCCCCceEE
Confidence 33444789999999997 6666 56678999999888875421 0 000123446789999
Q ss_pred ECCC-CCEEEEEECCCEEEEEEeeCCcccce-eEEEec-cccCeeEEEEcCCCCceEEEEeeCC---------------C
Q 001367 404 WSPD-GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD---------------K 465 (1091)
Q Consensus 404 ~spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d---------------~ 465 (1091)
++++ |+++++.. .+.|.+||.. ++.... .....+ ....+.+++++++|+ +.++...+ +
T Consensus 78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence 9999 76555543 4479999987 543211 000001 123588999999998 55655544 5
Q ss_pred cEEEEeCCCCceeEEecCCCcceEEEeec--ccCCceEE-EEEecCCeEEEEecCC-CC-----ceeeecCCC-CcEEEE
Q 001367 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFI-FSISVDGKIKAWLYDS-LG-----ARVDYDAPG-LGCTRM 535 (1091)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l-~s~~~dg~i~iwd~~~-~~-----~~~~~~~~~-~~i~~~ 535 (1091)
.|..||.. ++..... .+......++++ ..+++..+ ++...++.|.+|+++. +. ....+..+. .....+
T Consensus 154 ~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred eEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 67788765 5543322 233445677774 11566555 4445688999999862 22 111222232 567889
Q ss_pred EEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q 001367 536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 609 (1091)
Q Consensus 536 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-s~dg~i~iwd~~~ 609 (1091)
+++++|+.+++... ++.|.+||..+++.+..+..+. ..+.+++|+|+++.|+++ ..++.|..|++..
T Consensus 232 ~~d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 232 DFDEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999988777643 4569999998787776666544 678999999999966655 4568899998764
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.36 E-value=1.9e-10 Score=125.14 Aligned_cols=245 Identities=9% Similarity=0.066 Sum_probs=164.3
Q ss_pred ccEEEEEEecCCCeEEE-------eecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCC-CCCCCCCee
Q 001367 734 NKISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT-DSNSQEAVP 805 (1091)
Q Consensus 734 ~~i~~~~~s~dg~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~ 805 (1091)
....+++|+++|..+++ ...++.+.+|+...... .....+ ..++...+.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-----------------------~~~~~~~~~~~~~~~~ 74 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-----------------------TVICKPEVNGYGGIPA 74 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-----------------------EEEECCEETTEECCEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-----------------------EEEEecccCCCCCCCc
Confidence 34578899999986666 46678888887543221 000000 001335688
Q ss_pred EEEecCC-CCEEEEEeCCeEEEEEccCceeEEE-ecC----CCCCeEEEEEcCCCCcEEEEEeCC---------------
Q 001367 806 CFALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD--------------- 864 (1091)
Q Consensus 806 ~l~~s~d-g~~la~~~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~s~~~~~~la~g~~d--------------- 864 (1091)
.++++++ |+++++...+.|.+||.. ++.... ... ....+..+++++ +++++++...+
T Consensus 75 ~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~ 152 (314)
T 1pjx_A 75 GCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp EEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred eEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCC
Confidence 9999999 776666656689999988 665433 221 123578999999 78877766655
Q ss_pred CeEEEEeccCcceeeeeccccCCeEEEEEC----CCCCEEEEE-eCCCcEEEEEcC-CCceeeeeeeeccCCCcCCCCCc
Q 001367 865 STILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSS-GGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSE 938 (1091)
Q Consensus 865 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s----pdg~~las~-s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~i 938 (1091)
+.|..|+.. ++... +..+......++|+ |+++.|..+ ..++.|.+|+++ ++.......+....++.. ..+
T Consensus 153 ~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p 228 (314)
T 1pjx_A 153 GSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGA 228 (314)
T ss_dssp EEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEE
T ss_pred CeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCC
Confidence 577778765 55433 33344557889999 999765444 567899999987 444322223333333210 146
Q ss_pred eEEEEcCCCCEEEEE-ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEE-EEEcCCcEEEEeCCC
Q 001367 939 THIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF-TSFVDGTLSIHEASN 1008 (1091)
Q Consensus 939 ~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~-t~~~dg~v~iwd~~~ 1008 (1091)
..++++++|+++++. .++.|.+||..+++.+..+ ..+...+.+++|++||+.|+ +...++.|..|++..
T Consensus 229 ~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 789999999988874 6789999999877766554 34457899999999999555 444567899999875
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.35 E-value=2.6e-10 Score=124.17 Aligned_cols=174 Identities=9% Similarity=0.058 Sum_probs=135.4
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEEccCce-----------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001367 802 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 870 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iw 870 (1091)
..+..+++++...++++++...+.+|++++.. ...... +.. |+.++| ++++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36899999999999999998888889987544 112222 445 999999 56788888 88999999
Q ss_pred eccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEE
Q 001367 871 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 950 (1091)
Q Consensus 871 d~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~l 950 (1091)
|+.+.........|..++.++.+.+.. +++++.||.|.+||++++.... +. ..|++++|||+| ..
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---------~~---~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---------LA---QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---------EE---ESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---------cc---CCceEEEEcCCc-eE
Confidence 998876666667788889988887653 8889999999999999765321 11 259999999999 44
Q ss_pred EEEecCeEEEEEcCCcce--eeeee-----c---CCccCEEEEEEeeCCCEEEEEE
Q 001367 951 LLVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 951 a~~~d~~i~vwd~~~~~~--~~~~~-----~---~h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
+...||++++|+...++. ...+. . +|...|.+|.|.+++.++++-+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 447899999999887775 33331 1 3678999999999999988644
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.34 E-value=6.2e-10 Score=124.92 Aligned_cols=242 Identities=12% Similarity=0.011 Sum_probs=163.3
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..++.++|+|+|+ |+++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 3788999999998 778888889999999988765432 112 22233 9999999999998
Q ss_pred ECCC--EEEEEEeeCCcccceeEEEec-cccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEE----ecCCCcc
Q 001367 415 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP 487 (1091)
Q Consensus 415 ~~d~--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~ 487 (1091)
..++ .|.+|+..++........+.. +...+.+++++|++. .|+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8765 788888877653322111112 445688999999555 244466788999999887764322 2222222
Q ss_pred e--EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC---------------CCcEEEEEEcCCCCEEEEEecC
Q 001367 488 V--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---------------GLGCTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 488 v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~i~~~~~s~d~~~l~~~~~~ 550 (1091)
- ..+++++. ++.++++...++.|+.|+.+.. ...+... -.....++++++|+.+++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 27888653 4567777788899999987643 2222111 12467899999999666543
Q ss_pred CCCceEEEEEecCCceeeEEEeccc------------ccccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001367 551 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1091)
Q Consensus 551 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~ 607 (1091)
.+...|+.|+..++.. ..+.++. ........+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0266799999877764 3343330 01245889999999777777777888887765
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.31 E-value=2.8e-10 Score=137.95 Aligned_cols=252 Identities=11% Similarity=0.046 Sum_probs=164.8
Q ss_pred cCCCCcEEEEEcCCCceEEEEEcC----CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 332 EGSSSPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 332 ~h~~~V~~v~fspdg~~llasg~~----dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+|...+..++|||||++++.+.+. ..+|++||+.+|+.+.. . + +......++|+ |
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-D 184 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-G 184 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-T
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-C
Confidence 455678899999999966544433 35799999999986542 0 1 11113567899 9
Q ss_pred CCEEEEEECCC-------------EEEEEEeeCCcccce-eEEEec-cccCeeEEEEcCCCCceEEEEee---CCCcEEE
Q 001367 408 GSLLGVAYSKH-------------IVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKV 469 (1091)
Q Consensus 408 g~~las~~~d~-------------~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~~~l~s~~---~d~~i~i 469 (1091)
|+.|+.++.+. .|++|++.++..... +..... |...+..+.|+|||+++ +++.+ .++.|.+
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYV 263 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEE
Confidence 99999998774 499999887653221 111123 44557889999999963 33333 2358999
Q ss_pred EeCCCCc-eeEEecCCCcceEEEeecccCCceEEEEEecC---CeEEEEecCCCCc--eeeecCCCCcEEEEEEcCCCCE
Q 001367 470 WDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRR 543 (1091)
Q Consensus 470 wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~ 543 (1091)
||+.++. ....+..+....... +.+. ++.+++....+ +.|..+++.+... ...+..+...+. .|+++++.
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~ 339 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY 339 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred EECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence 9998774 455665666555544 3322 33444454443 5799999987654 233444444444 89999999
Q ss_pred EEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeE
Q 001367 544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL 613 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d----g~i~iwd~~~~~~~ 613 (1091)
|+..... ++...|++|++..+. .+.+.... ...+..+.++++++.++....+ ++++.||+.+++..
T Consensus 340 lv~~~~~-~g~~~l~~~d~~g~~-~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 340 LFAEYMV-DATARVEQFDYEGKR-VREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEEE-TTEEEEEEECTTSCE-EEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEEE-CCeeEEEEEECCCCe-eEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 8877643 345679999988554 34443222 2457777888888877765443 88999999887643
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.30 E-value=1.4e-09 Score=116.94 Aligned_cols=228 Identities=10% Similarity=0.045 Sum_probs=150.4
Q ss_pred cEEEEEEecCCCeEEEe-ecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCC
Q 001367 735 KISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 813 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 813 (1091)
-.....|++++..++.. ..++.|..|+.... . ..... ....+.+++++++|
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~~~~i~~~~dG 65 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK----------------------Q-VQRVT-----MDAPVSSVALRQSG 65 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTC----------------------C-EEEEE-----CSSCEEEEEEBTTS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEe-----CCCceEEEEECCCC
Confidence 45578899966555544 45688888875432 1 11111 24568899999999
Q ss_pred CEEEEEeCCeEEEEEccCceeEEEecC----CCCCeEEEEEcCCCCcEEEEEeCC---------CeEEEEeccC-cceee
Q 001367 814 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVIS 879 (1091)
Q Consensus 814 ~~la~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~~la~g~~d---------g~i~iwd~~~-~~~~~ 879 (1091)
+++++ .++.|.+||..+++....... ....+..++++| +|+++++...+ ..-.+|.+.. ++. .
T Consensus 66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~ 142 (297)
T 3g4e_A 66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-K 142 (297)
T ss_dssp SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence 95554 578899999988765433321 123578899999 78876654321 2234554443 333 2
Q ss_pred eeccccCCeEEEEECCCCCEEE-EEeCCCcEEEEEc--CCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ec
Q 001367 880 KLEGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 955 (1091)
Q Consensus 880 ~l~~h~~~V~~l~~spdg~~la-s~s~Dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d 955 (1091)
.+..+......++|+||++.|. +.+.++.|.+|++ .++.....+.+....... .....++++++|++.++. ..
T Consensus 143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence 3333445578899999998764 5556788999998 455443333333332221 246789999999988775 45
Q ss_pred CeEEEEEcCCcceeeeeecCCccCEEEEEEe-eCCCEEEEEEc
Q 001367 956 THLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFV 997 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs-~dg~~l~t~~~ 997 (1091)
+.|.+||..+++.+..+.. +...+++++|. ||++.|++++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~~-p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKL-PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEEC-SSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEEC-CCCCceEEEEeCCCCCEEEEEcC
Confidence 7899999998988877543 35689999999 89887766554
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.29 E-value=1e-09 Score=117.87 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=155.2
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 410 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 410 (1091)
..+..-..+..|+|++..++++...++.|..||..+++... + .....+.+++++|+|++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l 67 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGY 67 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCE
Confidence 34444667899999776788888889999999998876431 1 13467999999999996
Q ss_pred EEEEECCCEEEEEEeeCCcccceeEEEec--cccCeeEEEEcCCCCceEEEEe-eC--------CCcEEEEeCCCCceeE
Q 001367 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITC-GD--------DKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~~~l~s~-~~--------d~~i~iwd~~~~~~~~ 479 (1091)
+++ . ++.|.+||..+++.. .+..... ....+..++++|+|+ +.++. +. ...-.||.+.....+.
T Consensus 68 ~v~-~-~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 142 (297)
T 3g4e_A 68 VAT-I-GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK 142 (297)
T ss_dssp EEE-E-TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE
T ss_pred EEE-E-CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE
Confidence 555 3 567999999876532 2111111 123588999999998 44443 21 1223455444222222
Q ss_pred EecCCCcceEEEeecccCCceEE-EEEecCCeEEEEecC--CCCce-----eeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 480 SFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~-----~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
.+..+....+.++|++ +++.+ ++.+.++.|.+|+++ ++... ..+.........++++++|+..++...
T Consensus 143 ~~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-- 218 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-- 218 (297)
T ss_dssp EEEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET--
T ss_pred EEeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC--
Confidence 3333344567788854 55544 566678899999984 33211 112222346788999999987776643
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEc-CCCCEEEEEeC
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 598 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~s~ 598 (1091)
.+.|..||..+++.+..+..+. ..+.+++|. |+++.|++++.
T Consensus 219 --~~~v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 --GGRVIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp --TTEEEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred --CCEEEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence 4569999999999888887654 678999998 88888777653
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.28 E-value=7e-10 Score=119.77 Aligned_cols=240 Identities=12% Similarity=0.041 Sum_probs=160.7
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
...+..|..+.......+|+|+|+.|++++..++.|..|+. +++.. . +..+...+..++
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~ 92 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNA 92 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEE
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceee
Confidence 34455566666688999999999988899988999999997 45422 1 223556789999
Q ss_pred ECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEecc-ccCeeEEEEcCCCCceEEEE----eeC-------------CC
Q 001367 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DK 465 (1091)
Q Consensus 404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~~~l~s----~~~-------------d~ 465 (1091)
++++|+++++...++.|.+|+.. ++.........+. ...+.++++.++|+ +.++ |.. .+
T Consensus 93 ~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 93 VDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred ECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCC
Confidence 99999977766666789999986 4421111111111 13577899999998 6665 321 25
Q ss_pred cEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC------CeEEEEecCCCCc---eeeecCCCCcEEEEE
Q 001367 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMA 536 (1091)
Q Consensus 466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~---~~~~~~~~~~i~~~~ 536 (1091)
.|..||..+++..... .......++|+ +++..|+.+... +.|.+|++..... .............++
T Consensus 170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC 245 (305)
T ss_dssp EEEEECSSSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred eEEEEcCCCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence 6888887777654433 33456778884 466666666554 7899999875431 111122233455789
Q ss_pred EcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeE
Q 001367 537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 602 (1091)
Q Consensus 537 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i 602 (1091)
++++|+..++. . + .|.+|+. .++.+..+.... .+..++|+++++.|+.++.++..
T Consensus 246 ~d~~G~lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 246 VDRGGWLWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp ECTTSCEEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTEEE
T ss_pred ECCCCCEEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCeEE
Confidence 99999955443 2 2 3999998 566666666543 47889999999999888876533
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=1.7e-09 Score=121.35 Aligned_cols=249 Identities=10% Similarity=-0.011 Sum_probs=163.8
Q ss_pred CCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeccCccee
Q 001367 802 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 878 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg--~i~iwd~~~~~~~ 878 (1091)
.....++++++|+++++.. ++.|++||..++........ ..... ++|++ +++.|+++..++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4678999999999666665 58999999998877655544 23334 99999 788888887766 8999998766543
Q ss_pred eee----ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-
Q 001367 879 SKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 953 (1091)
Q Consensus 879 ~~l----~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~- 953 (1091)
..+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+... ..+...++|+|++..|.++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~-~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG-TNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC-CSSCCEEEEETTTTEEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC-CCccccEEEeCCCCEEEEEe
Confidence 333 224566889999995555555777889999999876532211100 111111 0011399999965555443
Q ss_pred -ecCeEEEEEcCCcceeeeeecCC---------------ccCEEEEEEeeCCCEEEEEE-cCCcEEEEeCCCCceEEEee
Q 001367 954 -HETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 954 -~d~~i~vwd~~~~~~~~~~~~~h---------------~~~v~~v~fs~dg~~l~t~~-~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
.++.|+.|+.... +..+ .++ -.....++++++|.++++-. .+++|+.|++.+|.......
T Consensus 286 ~~~~~I~~~~~~g~--~~~~-~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEWF-CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp TTTTEEEEECTTCC--EEEE-EECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEecCCC--EEEE-EeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 5678999987643 2221 121 13578999999999777777 78899999988887543322
Q ss_pred cccccC--CC--CcccccceeEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 1017 STAYLR--PT--TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1017 ~~~~~~--~~--~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
...... .+ ....--.|..++++|+ +.++++-..++.|+.+.+
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 100000 00 0001134678899995 788888888889988876
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.28 E-value=1.3e-10 Score=127.77 Aligned_cols=272 Identities=11% Similarity=0.023 Sum_probs=173.4
Q ss_pred CCcEEEEEcCCCceEEEEEc--CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~--~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
..+..++++|+|+ ++++.. .++.+.||.+.+|+.. .++-|. ....+|-..+..++|+++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 556653 2343666766555432 121111 01234667899999999998766
Q ss_pred EEEC-----CCEEEEEEeeCCcccceeEEEe----ccccCeeEEEEcCCCCceEEEEee---CCCcEEEEeCCCCceeEE
Q 001367 413 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS 480 (1091)
Q Consensus 413 s~~~-----d~~i~iwd~~~~~~~~~~~~~~----~h~~~v~~~~~s~d~~~~~l~s~~---~d~~i~iwd~~~~~~~~~ 480 (1091)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999988644422 221 12235689999987653 445555 678999999999987777
Q ss_pred ecCCCcceE-EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 481 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 481 ~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
+.+|..... ...+ ..++..+.+.+.+|.++.|. ..+..++++|||+.|+.+... ...++.
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 765532211 0222 22456677777788876663 135789999999988887642 224555
Q ss_pred EecC---Cce-----eeE--EEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEE
Q 001367 560 WNES---EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 560 wd~~---~~~-----~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
++.. .+. ... ...++. .....++++++|..+++...++.|.+||..+++........ .......++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va 297 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN 297 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence 5532 110 000 111222 34567899999988888888999999998667654443322 223467899
Q ss_pred EccCCCEEEEEECCCe
Q 001367 630 FNKNGTLLAVIANENR 645 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~ 645 (1091)
|.+++.++++....+.
T Consensus 298 ~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 298 FGSDGYLYFDCNQLHH 313 (343)
T ss_dssp ECTTSCEEEEECCGGG
T ss_pred ECCCCcEEEEeCcccc
Confidence 9998887777655433
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.27 E-value=1.5e-10 Score=125.92 Aligned_cols=196 Identities=11% Similarity=-0.003 Sum_probs=125.5
Q ss_pred eEEEecCCCCEEEEEe---CCeEEE--EEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC-----
Q 001367 805 PCFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----- 874 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~----- 874 (1091)
..++++|||++++++. ++.+.+ +|..+ +.++..... ..+.|++.+.+++.+.||.+.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 3567788888777775 256777 88877 344432111 123343455666677888888888886
Q ss_pred cceee----eeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecc------CCCcCCCCCceEEEEc
Q 001367 875 SEVIS----KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFH 944 (1091)
Q Consensus 875 ~~~~~----~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~l~fs 944 (1091)
++... .+.-...+. + ++++..++..+. +.|.+.|+.+........+... .+..+ .....++|+
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s 272 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKL 272 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEE
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEc
Confidence 44332 111122333 3 666666666666 8999999976432111111111 11110 122337899
Q ss_pred CCCCEEEEE-e-c--------CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCE-EEEEE-cCCcEEEEeCCCCceE
Q 001367 945 KDQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSF-VDGTLSIHEASNLEVQ 1012 (1091)
Q Consensus 945 ~dg~~la~~-~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~-l~t~~-~dg~v~iwd~~~~~~~ 1012 (1091)
|||+.+.++ . . +.+.++|+.+++.+..+..+ .....++|+|||++ +++.. .+++|.++|+.+++.+
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 999988874 3 2 36779999999998886654 36889999999984 55665 5899999999999999
Q ss_pred EEee
Q 001367 1013 CRIL 1016 (1091)
Q Consensus 1013 ~~~~ 1016 (1091)
.++.
T Consensus 351 ~~I~ 354 (368)
T 1mda_H 351 SSVE 354 (368)
T ss_dssp EECC
T ss_pred EEEE
Confidence 7775
No 222
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.27 E-value=1.2e-05 Score=94.51 Aligned_cols=522 Identities=9% Similarity=-0.006 Sum_probs=289.5
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
+|+.+ ..+.|+..++.+..... ...+ ..-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~-~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPL-TGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCC-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEc-CCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 45668888887654211 1112 22346789999997774 455566688999999775544333332224566
Q ss_pred EEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE
Q 001367 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1091)
Q Consensus 490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1091)
.+++.+. .+.+.++-...+.|.+.+++...........-.....+++.|....|+..-.. ....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 7777543 34566666777889999987655444443444567899999976666655321 14568888876554433
Q ss_pred EEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEE
Q 001367 570 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648 (1091)
Q Consensus 570 ~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 648 (1091)
.... ......++++++++.|+.+. ..+.|...|++.... ..+... ......+++.. +.++++-...+.|..
T Consensus 161 l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 161 LVPN----VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp EECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EECC----CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 3332 25788999999888877765 567899999876544 233222 12345677764 444444445788999
Q ss_pred EECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecC
Q 001367 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 728 (1091)
Q Consensus 649 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 728 (1091)
.|..++.....+.........+.+....... +.+.+.. ....|..+.+.
T Consensus 233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~~n~C~~-----------------------------~ng~C~~~C~~ 281 (628)
T 4a0p_A 233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--GWNECAS-----------------------------SNGHCSHLCLA 281 (628)
T ss_dssp EETTTCCSCEEEECSCCSCCEEEEECGGGSC--CCCTTTT-----------------------------TGGGCSSEEEE
T ss_pred EECCCCCceEEEecCCCCcceeeeeeecccc--cceEecc-----------------------------CCCCcchhhhc
Confidence 9987776555444333333333322111100 0000000 00001100000
Q ss_pred CccccccEEEE-----EEecC-------CCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCC
Q 001367 729 SKVKANKISRL-----TYNNG-------GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 796 (1091)
Q Consensus 729 ~~~~~~~i~~~-----~~s~d-------g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1091)
. ..+...+. ...+| ..+++.+. ...|+-..+... ... ......
T Consensus 282 ~--~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~--------------------~~~-~~~l~~- 336 (628)
T 4a0p_A 282 V--PVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQ--------------------QSP-DIILPI- 336 (628)
T ss_dssp E--TTTEEEEECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTT--------------------CCC-CEECCC-
T ss_pred C--CCCCeeEEcCCCcEecccCCcCccccceeeeec-cceEEEEecccc--------------------cCc-eEEEEe-
Confidence 0 00000000 01111 12222222 223332221110 000 001111
Q ss_pred CCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEEecC------CCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 001367 797 DSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTIL 868 (1091)
Q Consensus 797 ~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~~la~g~~dg~i~ 868 (1091)
..-..+..++|.+.+..|..+. .+.|..+++........+.. ....+..+|+...++++..+-+..+.|.
T Consensus 337 --~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~ 414 (628)
T 4a0p_A 337 --HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVIN 414 (628)
T ss_dssp --TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred --hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEE
Confidence 1234577899999888888776 47888888764333233322 2346789999984455666667788999
Q ss_pred EEeccCcceeeee-ccccCCeEEEEECC-CCCEEEEEeCCC--cEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEc
Q 001367 869 IYNARSSEVISKL-EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 944 (1091)
Q Consensus 869 iwd~~~~~~~~~l-~~h~~~V~~l~~sp-dg~~las~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs 944 (1091)
+.++. |+....+ ........+|++.| .|.++.+-.... .|...+++..... ..+. ... .....++++
T Consensus 415 v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~--~l~~---~~l---~~P~gla~D 485 (628)
T 4a0p_A 415 VTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE--VLFF---SGL---SKPIALALD 485 (628)
T ss_dssp EEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE--EEEC---SSC---SCEEEEEEE
T ss_pred EEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE--EEEe---ccC---CCccEEEEe
Confidence 99986 5544343 33456789999999 555555533332 5666667653311 1111 111 246799999
Q ss_pred CCCCEEEEEe--cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEe
Q 001367 945 KDQTRFLLVH--ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 945 ~dg~~la~~~--d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~ 1015 (1091)
++++.|..+. .+.|..+++. |.....+..........++... +..+.+=...+.|...|-.+|+....+
T Consensus 486 ~~~~~LYw~D~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 486 SRLGKLFWADSDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred CCCCEEEEEeCCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 9988887753 4689999985 4444444433344567777654 444444445567888888777654433
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.25 E-value=3.3e-10 Score=137.42 Aligned_cols=245 Identities=10% Similarity=0.075 Sum_probs=160.2
Q ss_pred CCCccEEEEEECCCCCEEEEEE-----CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCC---
Q 001367 394 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 465 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~--- 465 (1091)
+|...+..++|||||++||.+. ...+|++||+.+|+.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCccc
Confidence 4666889999999999999653 235799999999875432 1211 123578999 999 566665553
Q ss_pred ----------cEEEEeCCCCce--eEEe--cC-CCcceEEEeecccCCceEEEEEec----CCeEEEEecCCCC-ceeee
Q 001367 466 ----------TIKVWDAVTGSR--TYSF--EG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY 525 (1091)
Q Consensus 466 ----------~i~iwd~~~~~~--~~~~--~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~ 525 (1091)
.|++|++.++.. ...+ .. |...+.++.+ ++|+++|+.... ++.|+++|+.+.. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987653 2223 33 3444566777 557777755433 2479999988764 33444
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCcee--eEEEecccccccceEEEEEcCCCCEEEEEeC-CC--
Q 001367 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DH-- 600 (1091)
Q Consensus 526 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~-dg-- 600 (1091)
..+....... ++++|..|+..+........|..+|+.++.. .+.+..+. ..+. .|++++++|+.... ++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence 4444444444 6788887777665433467899999988754 34455544 3333 78899998887654 43
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC----CeEEEEECCCCC
Q 001367 601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN 655 (1091)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iwd~~~~~ 655 (1091)
.|++|++.++. ...+..... ..+..+.++++++.++....+ ++++.||+.+++
T Consensus 351 ~l~~~d~~g~~-~~~l~~p~~-~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGKR-VREVALPGL-GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSCE-EEEECCSSS-SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCCe-eEEeecCCC-ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 68899987544 445543321 235566677888877766554 889999987764
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.23 E-value=3.8e-10 Score=122.82 Aligned_cols=272 Identities=10% Similarity=-0.033 Sum_probs=172.0
Q ss_pred eEEEEEcCCC----cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE--------
Q 001367 348 TLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-------- 415 (1091)
Q Consensus 348 ~llasg~~dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-------- 415 (1091)
++.++...++ +|.+.|..+++.+.+.. .+ ..+ .++++|||+++.++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG-~~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GA-FLS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------EC-TTC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEe------------------CC-CCC--ceEECCCCCEEEEEccccccccc
Confidence 3555555555 88899999999886522 12 234 799999999999986
Q ss_pred --CCCEEEEEEeeCCcccceeEEEecc-----ccCeeEEEEcCCCCceEEEEee--CCCcEEE--EeCCCCceeEEecCC
Q 001367 416 --SKHIVQLYAYHGGSDARQQLEIDAH-----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGH 484 (1091)
Q Consensus 416 --~d~~i~iwd~~~~~~~~~~~~~~~h-----~~~v~~~~~s~d~~~~~l~s~~--~d~~i~i--wd~~~~~~~~~~~~~ 484 (1091)
.++.|.+||+.+++.+..+. +.+. ......++|+|||++ ++.+. .+..|.+ +|+.+ +.++...
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36789999999988766432 2200 123568999999995 44443 3567888 99877 4444311
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCC-----CCcee----eecCCCCcEEEEEEcCCCCEEEEEecCCCCce
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 555 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 555 (1091)
. . ..+.+.+. ..+++.+.||.+.+.++++ ++... .+.....+. . ++++..++..+. +
T Consensus 166 ~-~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 166 S-C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp S-C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred C-c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 1 1 11223322 3455666788877777765 22111 011112233 3 566666555543 3
Q ss_pred EEEEEecCCce--eeEEEecc-------cccccceEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCeeEEEEe
Q 001367 556 FLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 556 ~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~v~~~~~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~~ 617 (1091)
.+.+.|..++. .+..+... .........++++|++++++++.. ++.+.++|+.+++.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 48888876532 22222110 000011222689999999887543 2356699999999998887
Q ss_pred CCCCCCCCceEEEccCCCE-EEEEE-CCCeEEEEECCCCCeecccccc
Q 001367 618 AGGGLPENPRICFNKNGTL-LAVIA-NENRIKILETPESNSVDAAGVL 663 (1091)
Q Consensus 618 ~~~~~~~v~~v~~s~~~~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 663 (1091)
... ....++|+|||++ +++.. .++.|.++|+.+.+.+..+...
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 654 3689999999984 55555 5899999999999888777644
No 225
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.22 E-value=1.3e-05 Score=94.25 Aligned_cols=520 Identities=8% Similarity=-0.024 Sum_probs=270.1
Q ss_pred CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce-eEEecCCCcceEEEeecc
Q 001367 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~ 495 (1091)
...|+..++.+..... . .+.........++|++.+.. ++++-...+.|..+++..... ...+...-.....+++.+
T Consensus 17 ~~~I~~i~~~~~~~~~-~-~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~ 93 (619)
T 3s94_A 17 RRDLRLVDATNGKENA-T-IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 93 (619)
T ss_dssp SSBEEEECCC-----------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET
T ss_pred cccEEEEeCCCCcceE-E-EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe
Confidence 4557777776542101 0 12223445789999987774 444555577899999775532 223333334677888865
Q ss_pred cCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc
Q 001367 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1091)
. ++.+.++-...+.|.+.+++...........-.....+++.|.+..|+..... ....|...++............
T Consensus 94 ~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~~- 169 (619)
T 3s94_A 94 L-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINSE- 169 (619)
T ss_dssp T-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECSS-
T ss_pred c-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeCC-
Confidence 3 34566667778899999988665544443444456789999986666655321 1356777776543332222222
Q ss_pred ccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 576 LQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 576 ~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
......++++++++.|+.+. ..+.|...|++........... ......+++..+ ...++-...+.|...|..++
T Consensus 170 --~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 170 --IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp --CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred --CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 25678999999877777764 5678999998765443333211 123457777665 34444445688999998877
Q ss_pred Ceecccccccccceeeeec-cccccccccccCCcccCCCC------CCCCCcccccccccccccccccccCCcccceeec
Q 001367 655 NSVDAAGVLSDNLRKLSVN-PISTVTGAGIANGSVSNEDP------KEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 727 (1091)
Q Consensus 655 ~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~g~~~~~~~------s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 727 (1091)
+....+.........+++. +..... +.+.+....... +|..........+|.. +
T Consensus 245 ~~~~~i~~~~~~p~~i~v~~~~~qp~--~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~----l------------- 305 (619)
T 3s94_A 245 EGLREIHSDIFSPMDIHAFSQQRQPN--ATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVK----L------------- 305 (619)
T ss_dssp CCCEECCSCCCCCSEEEECCGGGSCC--CCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCC----B-------------
T ss_pred cccEEEecCCCCCcEEEEEccccCCC--ccccccCCCCcccceEECCCCCCCceEeCCchhe----e-------------
Confidence 6555444332223333332 111100 000000000000 0000000000000000 0
Q ss_pred CCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001367 728 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 807 (1091)
Q Consensus 728 ~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 807 (1091)
.. ...++. +....++..+..+.++..++..... . .....+ ..-..+.++
T Consensus 306 ~~----d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~-~~~~~~---~~l~~~~~l 354 (619)
T 3s94_A 306 LE----NGKTCK---DGATELLLLARRTDLRRISLDTPDF--------------------T-DIVLQL---EDIRHAIAI 354 (619)
T ss_dssp CT----TSSCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------C-CEECCC---SCCSSEEEE
T ss_pred cc----cCcccC---CCCceEEEEEcccceEEEecCCCcc--------------------c-eeEEec---cccCccEEE
Confidence 00 000000 0011222333334455444432111 0 001111 123457789
Q ss_pred EecCCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee-ccc
Q 001367 808 ALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGH 884 (1091)
Q Consensus 808 ~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l-~~h 884 (1091)
++.+.+..|..++ .+.|..+++........+.........+|+...++++..+-+..+.|.+.++.... ...+ ...
T Consensus 355 d~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~ 433 (619)
T 3s94_A 355 DYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISED 433 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTT
T ss_pred EEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECC
Confidence 9998777777766 57899998876443333333345677899986456666666677899999987543 3333 233
Q ss_pred cCCeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEE
Q 001367 885 SKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAI 960 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~v 960 (1091)
-....+|++.|...+|..+.. ...|...+++..... ... .+.. .....+++++++..|..+ ..+.|..
T Consensus 434 l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~--~l~---~~~l---~~P~GlalD~~~~~LY~aD~~~~~I~~ 505 (619)
T 3s94_A 434 LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV--VLV---NTSL---GWPNGLALDYDEGKIYWGDAKTDKIEV 505 (619)
T ss_dssp CCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEE---CSSC---SCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE--EEE---eCCC---CCCeeeEEcccCCEEEEEECCCCEEEE
Confidence 456889999997444444432 356777777653311 111 1111 256789999988877765 4467888
Q ss_pred EEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 961 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 961 wd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
+++.... ...+....-.....++...+ ...++-...+.|...+..+|
T Consensus 506 ~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 506 MNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred EecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 8876433 33332222222334555433 33333334466777777776
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.20 E-value=9.9e-10 Score=120.70 Aligned_cols=269 Identities=7% Similarity=-0.001 Sum_probs=172.7
Q ss_pred ccEEEEEEecCCCeEEEeec--CceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC
Q 001367 734 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 811 (1091)
Q Consensus 734 ~~i~~~~~s~dg~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 811 (1091)
.....++++++|+.+++... ++.++||.+... .. ..|. ... ....++-..+..+++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g------~~------~~~p--~~~------~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD------GL------IPFP--PQS------GNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT------EE------EESC--CCC------SSCCCCCSCEEEEEECS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC------Ce------ecCC--Ccc------cCcccceeEeeEEEEcC
Confidence 46789999999997777542 343566665311 10 0010 000 00113566889999999
Q ss_pred CCCEEEEEe------CCeEEEEEccCceeEEEecCC------CCCeEEEEEcCCCCcEEEEEe---CCCeEEEEeccCcc
Q 001367 812 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE 876 (1091)
Q Consensus 812 dg~~la~~~------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~~la~g~---~dg~i~iwd~~~~~ 876 (1091)
+|+++++.. ++.|.+||+.+++.++.+..+ ...+..++++++++..+++.. .++.|.+||+.+++
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 998766553 378999999999977766432 235689999984455556555 67899999999988
Q ss_pred eeeeeccccCCeE-EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe-
Q 001367 877 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 954 (1091)
Q Consensus 877 ~~~~l~~h~~~V~-~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~- 954 (1091)
....+.+|..... ...++++|..+.+.+.++.++.|.. .+..++|+|||+.|.++.
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence 7777766533211 1445667878888888888766531 256799999999888753
Q ss_pred c-CeEEEEEcCC---c-----ceeeee-ecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCC
Q 001367 955 E-THLAIYEAEE---L-----TCLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1024 (1091)
Q Consensus 955 d-~~i~vwd~~~---~-----~~~~~~-~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 1024 (1091)
. ..+..++... + +....+ ..++......++++++|.++++...++.|.+||..+|+...... .+
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~-- 288 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE-- 288 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG--
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC--
Confidence 3 3555555321 1 000000 11233455679999999999998889999999986676432222 11
Q ss_pred CcccccceeEEEeCCCCCCeEEEEecCCcE
Q 001367 1025 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1054 (1091)
Q Consensus 1025 ~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v 1054 (1091)
....+..++++| ++.++++.+..+.+
T Consensus 289 ---~~~~p~~va~~~-~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 289 ---KLSWTDSFNFGS-DGYLYFDCNQLHHS 314 (343)
T ss_dssp ---GGSCEEEEEECT-TSCEEEEECCGGGS
T ss_pred ---ceecCCeeEECC-CCcEEEEeCccccc
Confidence 123456788988 47788877755544
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.18 E-value=8.3e-09 Score=112.31 Aligned_cols=224 Identities=13% Similarity=0.025 Sum_probs=148.4
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
-..+.+|+|++..+++++..++.|..||..+++... + .....+.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 457889999876788888888999999998875431 1 123579999999999887765
Q ss_pred CCCEEEEEEeeCCcccceeEEEe-cc-ccCeeEEEEcCCCCceEEEEeeC------CCcEEEEeCCCCceeEEecCCCcc
Q 001367 416 SKHIVQLYAYHGGSDARQQLEID-AH-VGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP 487 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~-~h-~~~v~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~ 487 (1091)
.+ .|.+||..+++... ..... +. ...+.+++++|+|+ ++++... .+.|..++ +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999988875321 11111 11 23588999999998 4444332 24555566 45433 33223344
Q ss_pred eEEEeecccCCceEE-EEEecCCeEEEEecC--CC-Cc-----eeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEE
Q 001367 488 VYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558 (1091)
Q Consensus 488 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 558 (1091)
...++|+ ++++.+ ++.+.++.|.+|+++ ++ .. ...+.........++++++|+..++... .+.|.
T Consensus 181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~ 254 (326)
T 2ghs_A 181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD 254 (326)
T ss_dssp EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence 6677885 466555 445567899999986 43 21 1122223445678999999987776543 34699
Q ss_pred EEecCCceeeEEEecccccccceEEEEEc-CCCCEEEEEeC
Q 001367 559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 598 (1091)
Q Consensus 559 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~s~ 598 (1091)
+||. +++.+..+.... ..+.+++|+ ++++.|++++.
T Consensus 255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEB
T ss_pred EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEec
Confidence 9998 566666666544 578999998 88887766553
No 228
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.17 E-value=7.8e-10 Score=120.41 Aligned_cols=186 Identities=9% Similarity=0.048 Sum_probs=133.3
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.+..+++++....+++++.+ .+.+|++............ . +. . .... .+.. |..++| |++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~---~---~~----~-~~~~-----~lp~-V~~l~f--d~~ 98 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDST---P---LT----F-KWEK-----EIPD-VIFVCF--HGD 98 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSC---C---CC----C-SEEE-----ECTT-EEEEEE--ETT
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccc---c---cc----c-eEEe-----eCCC-eeEEEE--CCC
Confidence 67889999999988888887 4555886543210000000 0 00 0 0111 1345 999999 999
Q ss_pred EEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEEC
Q 001367 815 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 894 (1091)
Q Consensus 815 ~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s 894 (1091)
+|+++.++.|++||+.+.........+...+..+.+.+ . -+++++.||.|.+||+.++.... +...|++++||
T Consensus 99 ~L~v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WS 171 (388)
T 1xip_A 99 QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVT 171 (388)
T ss_dssp EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEEC
T ss_pred EEEEEcCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEc
Confidence 99999889999999987766555666677788888776 3 28889999999999999877643 45689999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecc---C---CCcCCCCCceEEEEcCCCCEEEE
Q 001367 895 DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP---D---GVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 895 pdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~---~---~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
|+| ++.+..||.+++|+.+.++......+..+ . ++. ..|.++.|.+++.++++
T Consensus 172 pkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~---~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 172 NSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE---YSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT---SEEEEEEESSSSEEEEE
T ss_pred CCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCC---eeEEEEEEecCCeEEEE
Confidence 999 67899999999999988764211222111 1 122 37999999999999998
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.16 E-value=1.4e-08 Score=110.58 Aligned_cols=225 Identities=10% Similarity=0.010 Sum_probs=146.3
Q ss_pred EEEEEEecCCCeEEEe-ecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 736 ISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 736 i~~~~~s~dg~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
....+|++++..++.. ..++.|..|+..... ..... ....+.+++++++|+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-----------------------~~~~~-----~~~~v~~i~~~~dg~ 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGR-----------------------KTVHA-----LPFMGSALAKISDSK 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-----------------------EEEEE-----CSSCEEEEEEEETTE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-----------------------EEEEE-----CCCcceEEEEeCCCe
Confidence 4578899986555444 456788888754321 11111 234688999999999
Q ss_pred EEEEEeCCeEEEEEccCceeEEEecC----CCCCeEEEEEcCCCCcEEEEEeC------CCeEEEEeccCcceeeeeccc
Q 001367 815 YLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMD------DSTILIYNARSSEVISKLEGH 884 (1091)
Q Consensus 815 ~la~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~~la~g~~------dg~i~iwd~~~~~~~~~l~~h 884 (1091)
++++. .+.|.+||..+++....... ....+..++++| +|+++++... .+.|..++ +++.. .+..+
T Consensus 103 l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~ 177 (326)
T 2ghs_A 103 QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD 177 (326)
T ss_dssp EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE
T ss_pred EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC
Confidence 88765 55599999988775433221 123578999999 7877665432 24566666 45443 33334
Q ss_pred cCCeEEEEECCCCCEEEEE-eCCCcEEEEEcC--CC-ceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEE
Q 001367 885 SKRVTGLVFSDALNILVSS-GGDAQIFVWDVD--GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 959 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~-s~Dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~ 959 (1091)
......++|+|||+.|+.+ +.++.|.+|++. ++ .......+....... .....++++++|.+.++. .++.|.
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEE
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEE
Confidence 4557889999999876544 457889999986 54 322212222222111 135689999999987775 457899
Q ss_pred EEEcCCcceeeeeecCCccCEEEEEEe-eCCCEEEEEEcC
Q 001367 960 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD 998 (1091)
Q Consensus 960 vwd~~~~~~~~~~~~~h~~~v~~v~fs-~dg~~l~t~~~d 998 (1091)
+||. +++.+..+. .+...+++++|+ +|++.|++++..
T Consensus 255 ~~d~-~g~~~~~i~-~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARYE-VPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEEE-CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEEE-CCCCCcEEEEEecCCCCEEEEEecC
Confidence 9998 566665543 345679999999 888877655544
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=1.6e-08 Score=121.20 Aligned_cols=228 Identities=14% Similarity=0.135 Sum_probs=152.3
Q ss_pred CCeEEEEEccCceeEEEecCCCCC--------------------------------eEEEEEcCCCCcEEEEEeCCC---
Q 001367 821 GGVISLYIVMTFKTILTIMPPSPT--------------------------------ATSLAFNPHDNNVIAIGMDDS--- 865 (1091)
Q Consensus 821 dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~s~~~~~~la~g~~dg--- 865 (1091)
++.|..+|..+|+.+.++...... ...++++| ++.+|++++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 588999999999998776532211 13578888 667777777664
Q ss_pred ----------------eEEEEeccCcceeeeecc--cc-------CCeEEEEECCCC---CEEEEEeCCCcEEEEEcCCC
Q 001367 866 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW 917 (1091)
Q Consensus 866 ----------------~i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg---~~las~s~Dg~i~vwd~~~~ 917 (1091)
.|..+|..+|+.+..++. |. ....-+....+| +.++.++.+|.|+++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999998876543 31 122223334477 67899999999999999998
Q ss_pred ceeeeeeeecc--------CCC------------c--C---C--CCCceEEEEcCCCCEEEEE-e---------------
Q 001367 918 GIQTCRSLQTP--------DGV------------M--T---L--APSETHIQFHKDQTRFLLV-H--------------- 954 (1091)
Q Consensus 918 ~~~~~~~~~~~--------~~~------------~--~---~--~~~i~~l~fs~dg~~la~~-~--------------- 954 (1091)
+..-...+... .+. . . . ...-..++|+|++.++.+. .
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 86432221100 000 0 0 0 0001367899998888773 2
Q ss_pred ----------------------------cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeC
Q 001367 955 ----------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 955 ----------------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~ 1006 (1091)
.+.|..||+.+++.+.+.. +..++....++.+|.++++++.||.+++||+
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 1679999999999887654 3344556677888889999999999999999
Q ss_pred CCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeE-EEEec----------------CCcEEEEecCC
Q 001367 1007 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF-AVGLT----------------NGEVYVIEPNE 1061 (1091)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l-~~g~~----------------dg~v~~w~~~~ 1061 (1091)
.+|+.+.++.... . +...-+.|.+ +|+++ ++.+. .+.+.+|.+..
T Consensus 506 ~tG~~lw~~~~~~----~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 506 ATGEKLWEAPTGT----G-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp TTCCEEEEEECSS----C-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCceeeeeeCCC----C-----cccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 9999998776322 1 1112234545 35544 44322 47899999974
No 231
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.13 E-value=1.3e-08 Score=109.79 Aligned_cols=232 Identities=15% Similarity=0.098 Sum_probs=151.3
Q ss_pred CCCccEEEEEECCCCC-EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC
Q 001367 394 DPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 394 ~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
.........+|+|+|+ ++++...++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+|+.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 3445677899999999 5556667789999987 443 22 3445667789999999998 5666556678999997
Q ss_pred CCCceeEEec---CC-CcceEEEeecccCCceEEEE----Eec-------------CCeEEEEecCCCCceeeecCCCCc
Q 001367 473 VTGSRTYSFE---GH-GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGLG 531 (1091)
Q Consensus 473 ~~~~~~~~~~---~~-~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~ 531 (1091)
. ++...... +. ...+..+++. ++|.+.++ |.. .+.|..||..+++..... ....
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred C-CCEEEEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 5 55332221 11 1235667774 46777775 321 245777776555544333 3345
Q ss_pred EEEEEEcCCCCEEEEEecCC--CCceEEEEEecCCceee--EEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001367 532 CTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607 (1091)
Q Consensus 532 i~~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~ 607 (1091)
...++|+||++.|+.+.... .+...|++|++..+... ..+... .......+++.++|+ +.++..+ .|.+|+.
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS 265 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSC-EEECCSS-EEEEECT
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCC-EEEecCC-cEEEECC
Confidence 67899999999887765421 01257999998765421 111111 123456788999998 4444444 5999998
Q ss_pred CCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCe
Q 001367 608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645 (1091)
Q Consensus 608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 645 (1091)
.++.+..+..+. .+..++|+++++.|++++.++.
T Consensus 266 -~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 -DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred -CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence 577777776554 3788999999999998887643
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.13 E-value=1.5e-08 Score=121.25 Aligned_cols=331 Identities=10% Similarity=0.051 Sum_probs=189.9
Q ss_pred EEEEEecCCeEEEEecCCCCceeeecCCCCc-----------EEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeE
Q 001367 501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLG-----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569 (1091)
Q Consensus 501 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 569 (1091)
.++.++.++.|.-+|..+++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+.+-
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEVW 152 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEEe
Confidence 5666777788888888888877766544221 112222 4556776654 6679999999999988
Q ss_pred EEecc-ccc-ccceEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCeeEEEEeCCCCC------------------
Q 001367 570 TYQGL-QLQ-HNSVSV-VHFDTAKDQILAAGD------DHVIKIWDMNKVQLLTTIDAGGGL------------------ 622 (1091)
Q Consensus 570 ~~~~~-~~~-~~~v~~-v~~~~~~~~l~~~s~------dg~i~iwd~~~~~~~~~~~~~~~~------------------ 622 (1091)
.+... ... ...+.+ ... .+..+++++. ++.|+.||..+|+.+-.+......
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred eecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 87754 100 011111 111 2455666543 799999999999999887653221
Q ss_pred ------------CCCceEEEccCCCEEEEEECCC-------------------eEEEEECCCCCeecccccccccceeee
Q 001367 623 ------------PENPRICFNKNGTLLAVIANEN-------------------RIKILETPESNSVDAAGVLSDNLRKLS 671 (1091)
Q Consensus 623 ------------~~v~~v~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~v~~~~ 671 (1091)
.....++++|++.++++++.++ .|..+|..+++....+.....
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~------ 304 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG------ 304 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT------
T ss_pred ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC------
Confidence 0113578888888888887764 355555555544433221100
Q ss_pred eccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCC---CeE
Q 001367 672 VNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG---QAI 748 (1091)
Q Consensus 672 ~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg---~~l 748 (1091)
..|+... .....-+....+| ..+
T Consensus 305 --------------------------------------d~wd~~~----------------~~~p~l~~~~~dG~~~~~l 330 (677)
T 1kb0_A 305 --------------------------------------DNWDYTS----------------TQPMILADIKIAGKPRKVI 330 (677)
T ss_dssp --------------------------------------CCSCCCC----------------CSCCEEEEEEETTEEEEEE
T ss_pred --------------------------------------ccccccc----------------CCCcEEEecccCCcEeeEE
Confidence 0121110 0111112233466 567
Q ss_pred EEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceee----------ecCCCCCCCCCeeEEEecCCCCEEEE
Q 001367 749 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV----------NDTTDSNSQEAVPCFALSKNDAYLFS 818 (1091)
Q Consensus 749 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~l~~s~dg~~la~ 818 (1091)
+.++.+|.+.++|..+.+...........-..-+| .++..... ...+...-...-..++++|++.++++
T Consensus 331 ~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv 409 (677)
T 1kb0_A 331 LHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYL 409 (677)
T ss_dssp EECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEE
T ss_pred EEECCCCEEEEEECCCCCEeccccccccCcccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEE
Confidence 77778888888887655432111100000000011 12221110 00110000111236788998888776
Q ss_pred EeC--------------------------------------------CeEEEEEccCceeEEEecCCCCCeEEEEEcCCC
Q 001367 819 ASG--------------------------------------------GVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 854 (1091)
Q Consensus 819 ~~d--------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 854 (1091)
... |.|..||+.+++.+.++... ..+....++. +
T Consensus 410 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~-~ 487 (677)
T 1kb0_A 410 PAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTT-A 487 (677)
T ss_dssp EEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEE-T
T ss_pred eChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEe-C
Confidence 431 67999999999998877632 3334445555 5
Q ss_pred CcEEEEEeCCCeEEEEeccCcceeeeecccc-CCeEEEEECCCCCEEEE
Q 001367 855 NNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVS 902 (1091)
Q Consensus 855 ~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~las 902 (1091)
+.++++++.||.+++||..+|+.+..+.... ....-+.++++|+.++.
T Consensus 488 g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 488 GNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 6678889999999999999999998886433 23344667788875544
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.13 E-value=3.6e-08 Score=110.07 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=98.8
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCC---------cceE-EEeecccCCceEEEEEecCCeEEEEecCCCCceeeec
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 526 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 526 (1091)
.++.++.++.|..+|..+|+.+..+.... ..+. .... ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 57778888999999999999987765421 2222 2222 23478888899999999999988877655
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccc--cceEEEEEcCCCCEEEEEeCCCeEEE
Q 001367 527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI 604 (1091)
Q Consensus 527 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~s~dg~i~i 604 (1091)
............ +..+++++. ++.|+.+|..+|+.+..+....... ......... +..+++++.++.+..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE--CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 443221112221 345555543 5679999999998877766533000 000111222 457888888999999
Q ss_pred EECCCCeeEEEEeCC
Q 001367 605 WDMNKVQLLTTIDAG 619 (1091)
Q Consensus 605 wd~~~~~~~~~~~~~ 619 (1091)
+|..+|+.+......
T Consensus 203 ~d~~tG~~~w~~~~~ 217 (376)
T 3q7m_A 203 VLMEQGQMIWQQRIS 217 (376)
T ss_dssp EETTTCCEEEEEECC
T ss_pred EECCCCcEEEEEecc
Confidence 999999988776543
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.09 E-value=3.2e-08 Score=118.80 Aligned_cols=326 Identities=10% Similarity=0.071 Sum_probs=187.5
Q ss_pred eEEEEEecCCeEEEEecCCCCceeeecCCCCc----------E-EEEEEcCCCCEEEEEecCCCCceEEEEEecCCceee
Q 001367 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG----------C-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568 (1091)
Q Consensus 500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 568 (1091)
..++.++.++.|.-+|..+++.+..+...... + ..+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~----dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVL----DGRLEAIDAKTGQRA 144 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEcc----CCEEEEEECCCCCEe
Confidence 36777777888999999888888776543221 0 11122 3556666654 667999999999988
Q ss_pred EEEecc-cccccceEEEEEcC--CCCEEEEEe------CCCeEEEEECCCCeeEEEEeCCCCC-----------------
Q 001367 569 RTYQGL-QLQHNSVSVVHFDT--AKDQILAAG------DDHVIKIWDMNKVQLLTTIDAGGGL----------------- 622 (1091)
Q Consensus 569 ~~~~~~-~~~~~~v~~v~~~~--~~~~l~~~s------~dg~i~iwd~~~~~~~~~~~~~~~~----------------- 622 (1091)
-.+... . ......+..+| .+..+++++ .+|.|+.||..+|+.+-.+......
T Consensus 145 W~~~~~~~--~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 145 WSVDTRAD--HKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEEECCSC--TTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred eeecCcCC--CCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 777653 1 00000111111 134455543 3789999999999998777531100
Q ss_pred ------------CCCceEEEccCCCEEEEEECCCe-------------------EEEEECCCCCeecccccccccceeee
Q 001367 623 ------------PENPRICFNKNGTLLAVIANENR-------------------IKILETPESNSVDAAGVLSDNLRKLS 671 (1091)
Q Consensus 623 ------------~~v~~v~~s~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~v~~~~ 671 (1091)
.....++++|+..++++++.++. |..+|..+++....+.....
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~------ 296 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG------ 296 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT------
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc------
Confidence 01135788998889999888764 66666666655443332110
Q ss_pred eccccccccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCC---eE
Q 001367 672 VNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ---AI 748 (1091)
Q Consensus 672 ~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~---~l 748 (1091)
..|+.. ....+.-.....+|+ .+
T Consensus 297 --------------------------------------d~wd~~----------------~~~~~~l~d~~~~G~~~~~v 322 (689)
T 1yiq_A 297 --------------------------------------DAWDYT----------------ATQHMILAELPIDGKPRKVL 322 (689)
T ss_dssp --------------------------------------CCSCCC----------------CCSCEEEEEEEETTEEEEEE
T ss_pred --------------------------------------cccccc----------------CCCCcEEEeeccCCcEEEEE
Confidence 011111 001111111222444 56
Q ss_pred EEeecCceEEEeecCCcccccccceeeccCCcccc----C---------------CCCCceeeecCCCCCCCCCeeEEEe
Q 001367 749 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ----P---------------RHGPQFMVNDTTDSNSQEAVPCFAL 809 (1091)
Q Consensus 749 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~~~~~~~~~~~~~v~~l~~ 809 (1091)
+.++.+|.++++|..+.+........ ...|. . .++..... .+...-...-..+++
T Consensus 323 ~~~~~~G~l~~lD~~tG~~l~~~~~~----~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~--~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 323 MQAPKNGFFYVIDRATGELLSAKGIV----PQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV--TPAFWGAHDWQPMSY 396 (689)
T ss_dssp EECCTTSEEEEEETTTCCEEEEEESS----CCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE--SSCTTCSSCSSCCEE
T ss_pred EEECCCCeEEEEECCCCCEecccccc----ccccccccCccCCCcccchhhccccCCCCeeEe--CCCcccccCCCcceE
Confidence 77777888888887655432110000 00010 0 01110111 110001112234788
Q ss_pred cCCCCEEEEEe----------------------------------------------CCeEEEEEccCceeEEEecCCCC
Q 001367 810 SKNDAYLFSAS----------------------------------------------GGVISLYIVMTFKTILTIMPPSP 843 (1091)
Q Consensus 810 s~dg~~la~~~----------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~ 843 (1091)
+|+..++++.. +|.|..||+.+++.+.++..+..
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~ 476 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI 476 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC
Confidence 88887777642 26799999999999888764432
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCC-eEEEEECCCCCEEE
Q 001367 844 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILV 901 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~la 901 (1091)
...-.++. .+.++++|+.||.++.||..+|+.+.++....+. ..-+.|+.||+..+
T Consensus 477 -~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 477 -FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp -CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred -ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 22234455 5568888999999999999999999888654332 24467778887544
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.08 E-value=7.1e-09 Score=113.47 Aligned_cols=301 Identities=11% Similarity=0.053 Sum_probs=173.7
Q ss_pred EEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeee
Q 001367 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1091)
Q Consensus 446 ~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1091)
++....++. +..++.++.|..|| .+++.+..+......+.++.. ..++. +..++.+ +..+|. +++.....
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g~-l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDGT-IYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTTE-ECCSSCE--EEEECC-CGGGGGGS
T ss_pred CceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCCc-EEEecCc--EEEECC-CCcEEEEE
Confidence 445556665 66677888999999 888887666544444555555 33443 4455544 777875 44443333
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001367 526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 605 (1091)
Q Consensus 526 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iw 605 (1091)
...........+. +..+.+++. ++.+..+|.. ++......... ..+.++...+++. ++.++.++.|..+
T Consensus 94 ~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~~ 162 (330)
T 3hxj_A 94 DTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYAI 162 (330)
T ss_dssp CC-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEEE
T ss_pred ECCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEEE
Confidence 3222222223333 444555543 4569999988 76665555433 3455566666665 6677788999999
Q ss_pred ECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccC
Q 001367 606 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 685 (1091)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 685 (1091)
|.. ++.......... .+.++...+++.+.+ ++ +.+..+| .++........
T Consensus 163 d~~-g~~~~~~~~~~~--~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~----------------------- 212 (330)
T 3hxj_A 163 NPD-GTEKWRFKTNDA--ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA----------------------- 212 (330)
T ss_dssp CTT-SCEEEEEECSSC--CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC-----------------------
T ss_pred CCC-CCEeEEEecCCC--ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc-----------------------
Confidence 998 777766654432 456666666666433 33 5666666 33322111100
Q ss_pred CcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCc
Q 001367 686 GSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 765 (1091)
Q Consensus 686 g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~ 765 (1091)
T Consensus 213 -------------------------------------------------------------------------------- 212 (330)
T 3hxj_A 213 -------------------------------------------------------------------------------- 212 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCe
Q 001367 766 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTA 845 (1091)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i 845 (1091)
....+.++++.++|.+.+...++.+..+|. +++.+..+......+
T Consensus 213 ----------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~ 257 (330)
T 3hxj_A 213 ----------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIE 257 (330)
T ss_dssp ----------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCC
T ss_pred ----------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCcc
Confidence 011223333444444444333455555542 334444433333334
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001367 846 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 846 ~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~ 916 (1091)
..+.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|++.+ ++.+|.+++...+.
T Consensus 258 ~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 258 SSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLE 324 (330)
T ss_dssp SCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC--
T ss_pred ccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEeccc
Confidence 4455655 45 4566888889999996 6777666655556677888888887555 88899998887665
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.07 E-value=8.9e-08 Score=106.83 Aligned_cols=277 Identities=10% Similarity=0.037 Sum_probs=170.2
Q ss_pred EEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCc
Q 001367 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 429 (1091)
Q Consensus 350 lasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 429 (1091)
+.+++.++.|..+|..+|+.+-..... ... .. .......+.+ ....++..+.+++.++.|..+|..+|+
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~-------~~~-~~--~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLA-------EKD-GW--FSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECC-------C----C--CSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCc-------ccc-cc--ccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 466677899999999999876432210 000 00 0000122222 122246678888899999999999987
Q ss_pred ccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcce-----EEEeecccCCceEEEE
Q 001367 430 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----YSLCPHAKENIHFIFS 504 (1091)
Q Consensus 430 ~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~s 504 (1091)
.+. ............... ++ .++.++.++.|..+|..+|+.+..+....... ..... .+..++.
T Consensus 125 ~~W---~~~~~~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~~ 193 (376)
T 3q7m_A 125 VAW---QTKVAGEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAVV 193 (376)
T ss_dssp EEE---EEECSSCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEEE
T ss_pred EEE---EEeCCCceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEEE
Confidence 543 222222111122222 33 47778889999999999999988775432211 11122 1236778
Q ss_pred EecCCeEEEEecCCCCceeeecCCCCc----EEE---EEEcC--CCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc
Q 001367 505 ISVDGKIKAWLYDSLGARVDYDAPGLG----CTR---MAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1091)
Q Consensus 505 ~~~dg~i~iwd~~~~~~~~~~~~~~~~----i~~---~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1091)
++.++.+..+|..+++........... +.. +...| .+..++.++. ++.+..+|..+++.+.....
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~-- 267 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY----NGNLTALDLRSGQIMWKREL-- 267 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT----TSCEEEEETTTCCEEEEECC--
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec----CcEEEEEECCCCcEEeeccC--
Confidence 888999999999988877655432110 000 00111 2455555543 45699999999987765543
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCC
Q 001367 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 576 ~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
.....+.. ++..+++++.++.+..+|..+++.+........ ........ .+..+++++.+|.++++|..+++
T Consensus 268 ---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 268 ---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp ---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred ---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 22333333 467888999999999999999998877652211 11222233 25678899999999999999998
Q ss_pred eeccccc
Q 001367 656 SVDAAGV 662 (1091)
Q Consensus 656 ~~~~~~~ 662 (1091)
.+.....
T Consensus 340 ~~~~~~~ 346 (376)
T 3q7m_A 340 FVAQQKV 346 (376)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7665543
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.06 E-value=2.5e-08 Score=108.23 Aligned_cols=239 Identities=13% Similarity=0.094 Sum_probs=152.9
Q ss_pred EEc--CCCceEEEEEcCCCcEEEEEcCCCCc--eeeeceeEEeccccccceeeeeecC-CCccEEEEEECCCCCEEEEEE
Q 001367 341 DFH--PVQHTLLLVGTNVGDTGLWDVNSGQK--LFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 341 ~fs--pdg~~llasg~~dg~i~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~las~~ 415 (1091)
.++ +++++|++.|..+++|.|.|+.+... .....+ + ...+... .......+..+||| .++++.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~i---e--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~ 155 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVI---E--------PEEVKKVSGYSRLHTVHCGPDA-IYISAL 155 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEE---C--------HHHHHHHHCEEEEEEEEECSSC-EEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeee---c--------hhhcccccCCCcccceeECCCe-EEEEcC
Confidence 347 89999999999999999999975421 111000 0 0000000 11245668889999 666665
Q ss_pred CC------CEEEEEEeeCCcccceeEEEeccc-cCeeEEEEcCCCCceEEEEee-------------------CCCcEEE
Q 001367 416 SK------HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG-------------------DDKTIKV 469 (1091)
Q Consensus 416 ~d------~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~~~l~s~~-------------------~d~~i~i 469 (1091)
.+ +.|.+.|..+++.+.... ..... .--..+.|+|+++ .+++.. .+.+|.+
T Consensus 156 g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 156 GNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp EETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred CCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 54 789999999987665321 11222 2234588899999 677774 3689999
Q ss_pred EeCCCCceeEEecCC--CcceEEEeecccCCceEEEEEe------cCCeEEEEecCCCCce--ee--ecC-------C--
Q 001367 470 WDAVTGSRTYSFEGH--GAPVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGAR--VD--YDA-------P-- 528 (1091)
Q Consensus 470 wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~--~~--~~~-------~-- 528 (1091)
||+.+++.+.++... ......+.|..++++.+++.++ .+++|.+|..+.+... .. +.. .
T Consensus 233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence 999999888887642 1334556665577777777666 5668877766542110 01 111 0
Q ss_pred -------CCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC---ceeeEEEeccc-----------ccccceEEEEEc
Q 001367 529 -------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQ-----------LQHNSVSVVHFD 587 (1091)
Q Consensus 529 -------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~-----------~~~~~v~~v~~~ 587 (1091)
......+.+|+||++|.++.. +.+.|.++|+.. .+.+..+.... .-......++++
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS 389 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS 389 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence 234678899999999998765 356799999863 34444443320 000135788999
Q ss_pred CCCCEEEEEe
Q 001367 588 TAKDQILAAG 597 (1091)
Q Consensus 588 ~~~~~l~~~s 597 (1091)
|||++++++.
T Consensus 390 pDGk~LyVaN 399 (462)
T 2ece_A 390 RDGRRVYVTN 399 (462)
T ss_dssp TTSSEEEEEC
T ss_pred CCCCEEEEEc
Confidence 9999999986
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.05 E-value=1.2e-07 Score=102.88 Aligned_cols=232 Identities=14% Similarity=0.109 Sum_probs=149.9
Q ss_pred Eec--CCCCEEEEEe--CCeEEEEEccCc----eeEEEec-------CCCCCeEEEEEcCCCCcEEEEEeCC------Ce
Q 001367 808 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDD------ST 866 (1091)
Q Consensus 808 ~~s--~dg~~la~~~--dg~i~iwd~~~~----~~~~~~~-------~~~~~i~~l~~s~~~~~~la~g~~d------g~ 866 (1091)
.++ +++++|++.+ ++.|.++|+.+. +..+++. ........+.++| +| +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 346 8899999887 688999999765 6666663 1112456788899 77 66666555 78
Q ss_pred EEEEeccCcceeeeeccccC---CeEEEEECCCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeee
Q 001367 867 ILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS 924 (1091)
Q Consensus 867 i~iwd~~~~~~~~~l~~h~~---~V~~l~~spdg~~las~s-------------------~Dg~i~vwd~~~~~~~~~~~ 924 (1091)
|.++|..+++.+.++....+ --+.+.|+|+++.+++.. .+.+|.+||+.+++... .
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence 99999999999988863222 234588899999998875 36889999999864332 2
Q ss_pred eeccCCCcCCCCCceEEEE--cCCCCEEEEE-------ecCeEEEEEcCCcceee--ee-ecCC----------------
Q 001367 925 LQTPDGVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLK--QW-FPIS---------------- 976 (1091)
Q Consensus 925 ~~~~~~~~~~~~~i~~l~f--s~dg~~la~~-------~d~~i~vwd~~~~~~~~--~~-~~~h---------------- 976 (1091)
+....... ....+.| +|+|+++.++ -+++|.+|....++... .+ ....
T Consensus 244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 22211111 2345555 9999988873 34577776654432111 00 0000
Q ss_pred ccCEEEEEEeeCCCEEEEEEc-CCcEEEEeCCC---CceEEEeeccccc-----CCCCcccccceeEEEeCCCCCCeEEE
Q 001367 977 SVPISQATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYL-----RPTTSCLHVYPHAIAAHPLKPTQFAV 1047 (1091)
Q Consensus 977 ~~~v~~v~fs~dg~~l~t~~~-dg~v~iwd~~~---~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~p~d~~~l~~ 1047 (1091)
......|.+|+||++|.++.. .+.|.++|+.. .+++..+...... +.+ ......+..+.++| ||++|.+
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G-~~~~ggPr~~~lSp-DGk~LyV 397 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG-HKLTGAPQMLEISR-DGRRVYV 397 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS-CCCCSCCCCEEECT-TSSEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc-ccCCCCCCEEEEcC-CCCEEEE
Confidence 134678999999999887765 57899999863 3445444422110 000 00012466789999 5888888
Q ss_pred Ee
Q 001367 1048 GL 1049 (1091)
Q Consensus 1048 g~ 1049 (1091)
+.
T Consensus 398 aN 399 (462)
T 2ece_A 398 TN 399 (462)
T ss_dssp EC
T ss_pred Ec
Confidence 88
No 239
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.05 E-value=2.6e-08 Score=119.48 Aligned_cols=291 Identities=12% Similarity=0.060 Sum_probs=178.3
Q ss_pred EEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC-ccE-EEEEECCCCCEEEEEECCCEEEEEEeeC
Q 001367 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHG 427 (1091)
Q Consensus 350 lasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~spdg~~las~~~d~~i~iwd~~~ 427 (1091)
+++++.++.|.-+|..+|+.+-..... .... ...... ..+ ..++. ++..|++++.|+.|..+|..+
T Consensus 73 vyv~~~~~~v~AlD~~tG~~~W~~~~~-------~~~~---~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~T 140 (689)
T 1yiq_A 73 MYTTGPFSVVYALDARDGRLIWKYDPQ-------SDRH---RAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKT 140 (689)
T ss_dssp EEEECGGGCEEEEETTTCCEEEEECCC-------CCGG---GGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred EEEEcCCCeEEEEECCCCceeEEEcCC-------CCcc---ccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCC
Confidence 456677899999999999976432110 0000 000000 000 01122 466888888999999999999
Q ss_pred CcccceeEEEeccccCeeEEEEcC---CCCceEEEEee-----CCCcEEEEeCCCCceeEEecCCC-c------------
Q 001367 428 GSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHG-A------------ 486 (1091)
Q Consensus 428 ~~~~~~~~~~~~h~~~v~~~~~s~---d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~-~------------ 486 (1091)
|+.+-.... ..+......+..+| ++. +++..+ .++.|+.||..+|+.+..+.... .
T Consensus 141 G~~~W~~~~-~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 141 GQRAWSVDT-RADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp CCEEEEEEC-CSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred CCEeeeecC-cCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 986543211 10111111111122 454 333322 37899999999999988774210 0
Q ss_pred -----------------ce-EEEeecccCCceEEEEEecCCe-------------------EEEEecCCCCceeeecCCC
Q 001367 487 -----------------PV-YSLCPHAKENIHFIFSISVDGK-------------------IKAWLYDSLGARVDYDAPG 529 (1091)
Q Consensus 487 -----------------~v-~~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~ 529 (1091)
.+ ..+++. ++..+++.++.++. |..+|.++++.+..+....
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~d--~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~ 295 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAYD--PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP 295 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEEE--TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccCCceeeecCCCCccccceeEc--CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence 00 133443 34457888877764 9999999999887665421
Q ss_pred C---------cEEEEEEcCCCC---EEEEEecCCCCceEEEEEecCCceeeEEEecccc---------------------
Q 001367 530 L---------GCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--------------------- 576 (1091)
Q Consensus 530 ~---------~i~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 576 (1091)
. +........+|+ .++.+. .++.++++|..+|+.+........
T Consensus 296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 296 GDAWDYTATQHMILAELPIDGKPRKVLMQAP----KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred cccccccCCCCcEEEeeccCCcEEEEEEEEC----CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 1 121122223554 455543 377899999999998744321110
Q ss_pred ----c-----------ccceEEEEEcCCCCEEEEEeC-------------------------------------------
Q 001367 577 ----Q-----------HNSVSVVHFDTAKDQILAAGD------------------------------------------- 598 (1091)
Q Consensus 577 ----~-----------~~~v~~v~~~~~~~~l~~~s~------------------------------------------- 598 (1091)
. ......++++|+...+++...
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 0 001123688898888877532
Q ss_pred --CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeeccccccc
Q 001367 599 --DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS 664 (1091)
Q Consensus 599 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 664 (1091)
+|.|+.||+.+|+.+-....+.. ...-.+...+.++++++.||.++.||..+++.+..+....
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcceeEEEEECCCCCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence 37899999999999988876543 2334666678899999999999999999999988776543
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.04 E-value=2.1e-08 Score=112.98 Aligned_cols=273 Identities=11% Similarity=0.032 Sum_probs=171.3
Q ss_pred CCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEE-c-CCCCEEEEEe------------------C
Q 001367 539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG------------------D 598 (1091)
Q Consensus 539 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~-~-~~~~~l~~~s------------------~ 598 (1091)
+||++++.+.. .+..|.+.|+.+.+..+.+.-.. ...+..+++ + |+++++++++ .
T Consensus 99 ~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 99 YDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp EEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred cCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence 48999988654 36679999999999888664322 245788887 5 9999999985 2
Q ss_pred CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeecccccc
Q 001367 599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 678 (1091)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 678 (1091)
++.+.+.|.++.+...++...+. -..++++|+|+++++.+.+..- +..+..... .
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~~~i~~~~~--~------------- 228 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------GMTLPEMTA--A------------- 228 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------CSSHHHHTC--C-------------
T ss_pred CceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------Ccchhhccc--c-------------
Confidence 45799999999999988876543 3678899999999998875321 100000000 0
Q ss_pred ccccccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEE
Q 001367 679 TGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 758 (1091)
Q Consensus 679 ~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~ 758 (1091)
.-..+.+.+..... .+.++|+.... +.+.
T Consensus 229 --------------------------~~d~v~V~~~~~~~---------------------~~v~~Gk~~~i----~~V~ 257 (595)
T 1fwx_A 229 --------------------------EMDHIVVFNIAEIE---------------------KAIAAGDYQEL----NGVK 257 (595)
T ss_dssp --------------------------SEEEEEEEEHHHHH---------------------HHHHHTCSEEE----TTEE
T ss_pred --------------------------ccceEEEeecccee---------------------EeccCCCeeEE----CcEE
Confidence 00111111111000 01122322221 2355
Q ss_pred EeecCCcccccccceeeccCCccccCCCCCc-eeeecCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEccCce--
Q 001367 759 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-- 833 (1091)
Q Consensus 759 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~-- 833 (1091)
|.|....+ +.. +.... -.....++.++|||+++++++ +++|.++|+.+.+
T Consensus 258 VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~ 312 (595)
T 1fwx_A 258 VVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV 312 (595)
T ss_dssp EEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred EEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc
Confidence 55543210 111 11111 122456789999999999987 5889999999763
Q ss_pred ----------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC----------cceeeeeccccCCe-----
Q 001367 834 ----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------SEVISKLEGHSKRV----- 888 (1091)
Q Consensus 834 ----------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~----------~~~~~~l~~h~~~V----- 888 (1091)
...++. .......++|+| +|...++...|+.|.+||+.+ .+.+..+..|-.+-
T Consensus 313 ~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~ 390 (595)
T 1fwx_A 313 FYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTV 390 (595)
T ss_dssp HHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEET
T ss_pred cccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceec
Confidence 233332 345678999999 776666777899999999987 44566665554321
Q ss_pred EEEEECCCCCEEEEEeC---CCc----------EEEEEcCCCce
Q 001367 889 TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGI 919 (1091)
Q Consensus 889 ~~l~~spdg~~las~s~---Dg~----------i~vwd~~~~~~ 919 (1091)
.++.++|||++|+++.. |+. -.++|+++++.
T Consensus 391 ~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 391 MGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp TTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred cceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 23456899999998753 543 27899976553
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.02 E-value=1.2e-08 Score=111.75 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=172.1
Q ss_pred EEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC
Q 001367 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417 (1091)
Q Consensus 338 ~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 417 (1091)
....+..+|. + ..|+.++.|..|| .+|+.+.. ...+...+.++...++|.+.+ ++.+
T Consensus 23 ~~~~~d~~g~-l-~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~v-~t~~ 79 (330)
T 3hxj_A 23 SSPILAKNGT-I-YLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIYF-GSDK 79 (330)
T ss_dssp CCCEECTTSC-E-ECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEECC-SSCE
T ss_pred cCceEccCCe-E-EEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEEE-ecCc
Confidence 3455666776 4 6677788999999 88876532 111334567777877776444 4333
Q ss_pred CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccC
Q 001367 418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497 (1091)
Q Consensus 418 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 497 (1091)
|..+|. +++.+... ...........+. ++ .+..++.++.|..+|.. ++.......+...+.++.. .+
T Consensus 80 --l~~~d~-~g~~~~~~---~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~ 146 (330)
T 3hxj_A 80 --VYAINP-DGTEKWRF---DTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SE 146 (330)
T ss_dssp --EEEECC-CGGGGGGS---CC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CT
T ss_pred --EEEECC-CCcEEEEE---ECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cC
Confidence 888886 55443321 1122222333333 44 46778888999999988 8877776655555555555 33
Q ss_pred CceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccccc
Q 001367 498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577 (1091)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 577 (1091)
++ .++.++.++.|..+|.. ++...........+.++.+.+++...+.. +.+..+| .+++....+....
T Consensus 147 ~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~-- 214 (330)
T 3hxj_A 147 DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY-- 214 (330)
T ss_dssp TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS--
T ss_pred CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC--
Confidence 44 46678888999999988 66666665555567777787888765543 2289999 6776665555433
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCee
Q 001367 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 657 (1091)
Q Consensus 578 ~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 657 (1091)
..+.++...+++ .+.+++.++.+..+|. +++.+..+..... .+..+.+.+++ .|.+++.+|.+..+|. +++.+
T Consensus 215 -~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 215 -WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp -CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred -cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence 557777888776 4666777888888874 5666666554433 23455666555 5777888889999985 55555
Q ss_pred cccc
Q 001367 658 DAAG 661 (1091)
Q Consensus 658 ~~~~ 661 (1091)
....
T Consensus 288 ~~~~ 291 (330)
T 3hxj_A 288 WNFE 291 (330)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 242
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.02 E-value=0.00012 Score=86.08 Aligned_cols=477 Identities=9% Similarity=-0.036 Sum_probs=240.3
Q ss_pred CCcEEEEeCCCCc-eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc-eeeecCCCCcEEEEEEcCCC
Q 001367 464 DKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG 541 (1091)
Q Consensus 464 d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~ 541 (1091)
...|+..|+.... ........-.....+++++. ++.++++-...+.|..++++.... ...+...-.....+++.+.+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~-~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeC-CCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 4568888877543 11122223334667777654 345555666678898888876532 23333333567899999977
Q ss_pred CEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeEEEEeCC
Q 001367 542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~~~~~ 619 (1091)
..|+.+.. ..+.|.+.++............ ......+++.|.+..|+.+.. .+.|...+++...........
T Consensus 96 ~~ly~~d~---~~~~I~v~~~dG~~~~~l~~~~---l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 96 EKLYWTDS---ETNRIEVSNLDGSLRKVLFWQE---LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp TEEEEEET---TTTEEEEEETTSCSCEEEECSS---CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred CEEEEEeC---CCCEEEEEECCCCCEEEEEeCC---CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC
Confidence 77776643 3567999998755433233222 245778999998777776653 467777787654433333222
Q ss_pred CCCCCCceEEEccCCCEEEEEEC-CCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCC
Q 001367 620 GGLPENPRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVK 698 (1091)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~ 698 (1091)
....+.++++++++.|+.+.. .+.|..+++..........+.......+++. .+ .
T Consensus 170 --~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~---------------------~~-~ 225 (619)
T 3s94_A 170 --IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF---------------------ED-I 225 (619)
T ss_dssp --CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEES---------------------SS-E
T ss_pred --CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEe---------------------CC-E
Confidence 234688999997776666654 5778888886543222222111111222221 11 2
Q ss_pred cccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCccccccccee---e
Q 001367 699 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT---T 775 (1091)
Q Consensus 699 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~ 775 (1091)
..++-...+.|...+...+... ..+. .. ......+ .++.-............ .
T Consensus 226 ly~td~~~~~V~~~d~~tg~~~--~~i~-~~---~~~p~~i------------------~v~~~~~qp~~~n~C~~~ng~ 281 (619)
T 3s94_A 226 LYWTDWSTHSILACNKYTGEGL--REIH-SD---IFSPMDI------------------HAFSQQRQPNATNPCGIDNGG 281 (619)
T ss_dssp EEEECTTTCSEEEEESSSCCCC--EECC-SC---CCCCSEE------------------EECCGGGSCCCCCTTTTTGGG
T ss_pred EEEecCCCCEEEEEECCCCccc--EEEe-cC---CCCCcEE------------------EEEccccCCCccccccCCCCc
Confidence 2222222333333332211110 0000 00 0000111 11110000000000000 0
Q ss_pred ccCCccccCCCC--C--ceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEE-Eec-CCCCCeEEEE
Q 001367 776 KVPPRLYQPRHG--P--QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TIM-PPSPTATSLA 849 (1091)
Q Consensus 776 ~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~-~~~-~~~~~i~~l~ 849 (1091)
...+.+-.+..+ . |..-..+ .....+|. .....+|+.+..+.|+..++....... .+. ..-..+.+++
T Consensus 282 Cs~lCl~~~~~~~~~C~C~~g~~l----~~d~~~C~--~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld 355 (619)
T 3s94_A 282 CSHLCLMSPVKPFYQCACPTGVKL----LENGKTCK--DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAID 355 (619)
T ss_dssp CSSEEEECSSTTSEEEECCTTCCB----CTTSSCBC--SSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEE
T ss_pred ccceEECCCCCCCceEeCCchhee----cccCcccC--CCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEE
Confidence 000000000000 0 0000000 00111111 112346677777788888887654221 121 1234678999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecc
Q 001367 850 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP 928 (1091)
Q Consensus 850 ~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd-g~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~ 928 (1091)
|.+.++.++++-...+.|+.+++........+.........+++.+. +++.++-+..+.|.+.++++... ..+.
T Consensus 356 ~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~---~~l~-- 430 (619)
T 3s94_A 356 YDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR---KILI-- 430 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEE--
T ss_pred EEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE---EEEE--
Confidence 99855555555556789999998764433333333456778999864 44555556678899999986432 1111
Q ss_pred CCCcCCCCCceEEEEcCCCCEEEEEe---cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEc-CCcEEEE
Q 001367 929 DGVMTLAPSETHIQFHKDQTRFLLVH---ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIH 1004 (1091)
Q Consensus 929 ~~~~~~~~~i~~l~fs~dg~~la~~~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~-dg~v~iw 1004 (1091)
.... .....+++.|...+|..+. ...|...++. |.....+....-.....+++++++..|..+.. .+.|...
T Consensus 431 ~~~l---~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~ 506 (619)
T 3s94_A 431 SEDL---EEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVM 506 (619)
T ss_dssp CTTC---CSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ECCC---CCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEE
Confidence 1111 2478999999755555432 3567777765 33333333333557789999997777766654 4678888
Q ss_pred eCCCCc
Q 001367 1005 EASNLE 1010 (1091)
Q Consensus 1005 d~~~~~ 1010 (1091)
++....
T Consensus 507 ~~dG~~ 512 (619)
T 3s94_A 507 NTDGTG 512 (619)
T ss_dssp ESSSCC
T ss_pred ecCCCc
Confidence 886544
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=1.2e-09 Score=121.01 Aligned_cols=191 Identities=8% Similarity=-0.023 Sum_probs=112.6
Q ss_pred CCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc
Q 001367 407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1091)
Q Consensus 407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1091)
++..+++++.|+.|+.||..+|+.+. .+.. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 67899999999999999999997654 3333 4565666667777 677778999999999999998887765432
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1091)
.......... ++..+++++.++.++.||..+++.+..+..+. ...++|++..+++++. ++.|+.||..+|+
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTRE 151 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSSS
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCCC
Confidence 1111111001 33478888999999999999988877665443 2345678888888765 6779999999998
Q ss_pred eeEEEecccccccceEEEEEcCCC---CEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 567 IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v~~v~~~~~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
.+..+.... .....+.++. ..+++++.+|.|+.||..+|+.+.....
T Consensus 152 ~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 152 LRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp CCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred EEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 766654322 1222333332 5678889999999999999998877764
No 244
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.91 E-value=0.00065 Score=85.36 Aligned_cols=604 Identities=8% Similarity=0.012 Sum_probs=304.6
Q ss_pred eeeecccCCCCcEEEEEcCC----CceEEEEEc--CCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccE
Q 001367 326 VAQTLIEGSSSPMSMDFHPV----QHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 399 (1091)
Q Consensus 326 ~~~~l~~h~~~V~~v~fspd----g~~llasg~--~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 399 (1091)
++.++..- ++|..++.-.. ...++++++ .+|++++..-.=+-.... .+ + +. .-..+
T Consensus 367 ~~~~~~N~-~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~-~~---~------------l~-gv~~i 428 (1158)
T 3ei3_A 367 AMETFTNL-GPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHA-SI---D------------LP-GIKGL 428 (1158)
T ss_dssp EEEEECCC-CSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEE-EE---C------------CC-SCCEE
T ss_pred eEeeecCc-CCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEE-ee---c------------CC-CccEE
Confidence 44455544 38888777432 123555444 367787765321111110 00 0 22 22456
Q ss_pred EEEEEC---CCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEE--cCCCCceEEEEeeCCCcEEEEeCCC
Q 001367 400 NRVVWS---PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVT 474 (1091)
Q Consensus 400 ~~l~~s---pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~d~~~~~l~s~~~d~~i~iwd~~~ 474 (1091)
+.+... ....||+.+..+.+ .|+.+... .+... ...+-......++. ..++ .++=.. ...|++.+...
T Consensus 429 Wtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev-~~~gf~~~~~TL~~~~l~~~---~ivQVt-~~~Irli~~~~ 501 (1158)
T 3ei3_A 429 WPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEET-ELMGFVDDQQTFFCGNVAHQ---QLIQIT-SASVRLVSQEP 501 (1158)
T ss_dssp EEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEE-CCTTCCSSSCEEEEEEETTT---EEEEEE-SSCEEEEESSS
T ss_pred EEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-ccccc-ccccccCCCCcEEEEEcCCC---eEEEEe-cCEEEEEECCC
Confidence 666543 24678888877766 56666432 22211 11111111111111 1222 233333 23477777666
Q ss_pred CceeEEecCCC-cceEEEeecccCCceEEEEEecCCeEEEEecCCCCcee-eecCCCCcEEEEEEcCC------CCEEEE
Q 001367 475 GSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSAN------GRRLFS 546 (1091)
Q Consensus 475 ~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d------~~~l~~ 546 (1091)
+..+..+.... ..|...+.. + ..++.++ ++.+.++.++.+.... ....-...|.|+++.|. ++++++
T Consensus 502 ~~~~~~w~~p~~~~I~~As~n---~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aV 576 (1158)
T 3ei3_A 502 KALVSEWKEPQAKNISVASCN---S-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAI 576 (1158)
T ss_dssp CCEEEEECCTTCCCCCEEEEC---S-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEE
T ss_pred CeEEEEEECCCCCEEEEEEeC---C-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEE
Confidence 66666665433 356665542 2 3555554 6788888776532111 11122457999998763 367777
Q ss_pred EecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEc--CCCCEEEEEeCCCeEEEEEC--CCCeeEEE--EeCCC
Q 001367 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD--TAKDQILAAGDDHVIKIWDM--NKVQLLTT--IDAGG 620 (1091)
Q Consensus 547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~~l~~~s~dg~i~iwd~--~~~~~~~~--~~~~~ 620 (1091)
+.. .++.++++++.+.+.+....-.. .....++.+. ....++.+|-.||.+.-+.+ .+|.+... ....
T Consensus 577 g~~---~d~tv~I~sL~~l~~~~~~~L~~--~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG- 650 (1158)
T 3ei3_A 577 GLW---TDISARILKLPSFELLHKEMLGG--EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG- 650 (1158)
T ss_dssp EET---TTTEEEEEETTTCCEEEEEECCS--SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-
T ss_pred EEC---CCCEEEEEECCCCCeEEEEECCC--CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-
Confidence 763 25679999998766554333211 1233333332 23457888999998765544 45655433 2222
Q ss_pred CCCCCceEEEccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcc
Q 001367 621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPE 700 (1091)
Q Consensus 621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l 700 (1091)
..++.-..+...+..-+.+..+....++.....-.+..+ ....+..++ .|.... -|+| +
T Consensus 651 -~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l--~~~~v~~~~---------------~F~se~-~~~g--~ 709 (1158)
T 3ei3_A 651 -TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV--NLKEVNYMC---------------PLNSDG-YPDS--L 709 (1158)
T ss_dssp -SSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEB--SSSCCCEEE---------------EECCSS-STTE--E
T ss_pred -CCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEecc--ChHHhceEe---------------ccCccc-CCCc--E
Confidence 224444445545554444555566666654322111111 111121111 111100 1221 2
Q ss_pred cccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCc---------------
Q 001367 701 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN--------------- 765 (1091)
Q Consensus 701 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~--------------- 765 (1091)
+ +..++.+++..++.......+.+. -...+..++++|+.+.++.+..+... ++....
T Consensus 710 v-~~~~~~LrI~~i~~~~~~~~~~ip-----L~~Tprri~y~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 781 (1158)
T 3ei3_A 710 A-LANNSTLTIGTIDEIQKLHIRTVP-----LYESPRKICYQEVSQCFGVLSSRIEV--QDTSGGTTALRPSASTQALSS 781 (1158)
T ss_dssp E-EECSSCEEEEEECCSSSEEEEEEE-----CSSEEEEEEEEGGGTEEEEEEEEEEE--ECSSSSEEESSCCHHHHCSEE
T ss_pred E-EEcCCceEEEEecccCCeeEEEEe-----CCCCceEEEEcCCCCEEEEEEEeccc--cccccccchhhhhhhhhhhhh
Confidence 2 222345777665432222222222 23477899999998876665543211 111000
Q ss_pred --------------ccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEE---ecCC-CCEEEEEe-------
Q 001367 766 --------------DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA---LSKN-DAYLFSAS------- 820 (1091)
Q Consensus 766 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~---~s~d-g~~la~~~------- 820 (1091)
....-+.......+++.|+.+.+.+....+.. ...+.+++ |..+ ..++++|.
T Consensus 782 ~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~---nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e 858 (1158)
T 3ei3_A 782 SVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ---NEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 858 (1158)
T ss_dssp EECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT---TEEEEEEEEECCTTCCCCEEEEEEEECCTTC
T ss_pred cccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC---CcceEEEEEEEEccCCCEEEEEEeeecCCCC
Confidence 00000111234567888888888776766643 44455554 3333 46787764
Q ss_pred ----CCeEEEEEccCceeEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECC
Q 001367 821 ----GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 895 (1091)
Q Consensus 821 ----dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~sp 895 (1091)
.|.|.+|++..++...... ...+.+++++-- +|++|| |- ..+|++|++...+.+..-..+-..|..+....
T Consensus 859 ~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla-~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~ 934 (1158)
T 3ei3_A 859 AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLA-SI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKT 934 (1158)
T ss_dssp SSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEE-EE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEE
T ss_pred CCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEE-Ec-CCEEEEEECCCCceEEEEeeccccEEEEEEec
Confidence 2679999987544322211 235678887754 455554 33 47899999986654331111222244333434
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCc-------ce
Q 001367 896 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL-------TC 968 (1091)
Q Consensus 896 dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~-------~~ 968 (1091)
.+++++.|..-..|.+...+...... ..+.. +-.. .+++++.|-.++.++++-.+|.+.+...... +.
T Consensus 935 ~~~~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~-D~~~---~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~ 1009 (1158)
T 3ei3_A 935 KGDFILVGDLMRSVLLLAYKPMEGNF-EEIAR-DFNP---NWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQH 1009 (1158)
T ss_dssp ETTEEEEEESSBCEEEEEEETTTTEE-EEEEE-CCSC---BCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGB
T ss_pred cCCEEEEEEhhheEEEEEEEcCCCeE-EEEEe-eccc---ccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccce
Confidence 57889989888778776654322111 11111 1111 3688999987776666667788888876531 22
Q ss_pred eeeeecCC-ccCEEEEEE---eeC---------CCEEEEEEcCCcEEEEeC
Q 001367 969 LKQWFPIS-SVPISQATF---SCD---------CRMVFTSFVDGTLSIHEA 1006 (1091)
Q Consensus 969 ~~~~~~~h-~~~v~~v~f---s~d---------g~~l~t~~~dg~v~iwd~ 1006 (1091)
+.....-| ...|+++.- .+. ...++.++.+|.|.+.-.
T Consensus 1010 L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1010 LQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp EEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred eeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 21111112 456666652 222 224677788888887643
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.91 E-value=5.7e-10 Score=123.57 Aligned_cols=191 Identities=9% Similarity=0.049 Sum_probs=107.3
Q ss_pred CCcEEEEEeCCCeEEEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcC
Q 001367 854 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 933 (1091)
Q Consensus 854 ~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 933 (1091)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+.++++.+++++.|+.|+.||.++++...............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 456888899999999999999999988876 556666667788888888899999999998876422111110000000
Q ss_pred CCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEE
Q 001367 934 LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1013 (1091)
Q Consensus 934 ~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~ 1013 (1091)
+..++.++..++.+.++.++.||..+|+.+..+... . ...++|++..+++++.|+.|+.||..+|+.+-
T Consensus 86 ------sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 86 ------SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp ------CSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ------CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC-C----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 111123443333367899999999999988764332 1 24567788899999999999999999998765
Q ss_pred EeecccccCCCCcccccceeEEEeCCC--CCCeEEEEecCCcEEEEecCCCCCCcccC
Q 001367 1014 RILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1069 (1091)
Q Consensus 1014 ~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~g~~dg~v~~w~~~~~~~~~~~~ 1069 (1091)
++....+.. .+++++ -+..+++++.||.|+.||...++..|...
T Consensus 155 ~~~~~~~~~------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 155 NATYFDYAA------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEEECC------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred eEecccccC------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 443211110 112210 01567889999999999999998889754
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.87 E-value=7.9e-08 Score=108.29 Aligned_cols=235 Identities=9% Similarity=0.010 Sum_probs=158.8
Q ss_pred CCCCEEEEEe--CCeEEEEEccCceeEEEecCC-CCCeEEEEE-c-CCCCcEEEEEe------------------CCCeE
Q 001367 811 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM------------------DDSTI 867 (1091)
Q Consensus 811 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~~~~~la~g~------------------~dg~i 867 (1091)
+||+++.+.. ++.|.+.|+.+.++.+.+.-+ ......+++ + | ++.++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 3899999887 478999999999988855433 346888898 5 8 777887774 34589
Q ss_pred EEEeccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCC--------------------------------------cE
Q 001367 868 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--------------------------------------QI 909 (1091)
Q Consensus 868 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg--------------------------------------~i 909 (1091)
.++|.++.+.+.++.--. .-..++++|||+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999998887765322 356688999999999888553 35
Q ss_pred EEEEcCC--CceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcCCcc------------eeeeee
Q 001367 910 FVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT------------CLKQWF 973 (1091)
Q Consensus 910 ~vwd~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~~~~------------~~~~~~ 973 (1091)
.|.|..+ +... ...+... ....++.+||||++++++ .+++|.++|+.+.+ ......
T Consensus 257 ~VID~~~~~~~~~-~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 257 KVVDGRKEASSLF-TRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp EEEECSGGGCCSS-EEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred EEEeCcccCCcee-EEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 5555554 2110 1112211 135689999999999985 56789999999764 222222
Q ss_pred cCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC----------CceEEEeecccccCCCCcccccceeEEEeCCCCCC
Q 001367 974 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1043 (1091)
Q Consensus 974 ~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1043 (1091)
. ......++|++||...++.-.|+.|.+||+.+ ...+.++.. .+.|.+ .-.+.....+| ||+
T Consensus 329 v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh----~~~~~g~t~~~-DGk 400 (595)
T 1fwx_A 329 L--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGH----LKTVMGETLDA-TND 400 (595)
T ss_dssp C--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEE----EEETTTTSTTC-CSS
T ss_pred C--CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-cccccc----ceeccceEeCC-CCC
Confidence 2 45788999999995455666799999999987 444545442 222111 11112234677 588
Q ss_pred eEEEEecCC--cE-----------EEEecCCCC
Q 001367 1044 QFAVGLTNG--EV-----------YVIEPNEPG 1063 (1091)
Q Consensus 1044 ~l~~g~~dg--~v-----------~~w~~~~~~ 1063 (1091)
+|++...-. .+ .++|++...
T Consensus 401 ~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 401 WLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 888876533 23 788985444
No 247
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.85 E-value=0.0011 Score=83.45 Aligned_cols=285 Identities=9% Similarity=0.060 Sum_probs=142.5
Q ss_pred cEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC----CCEEE
Q 001367 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLG 412 (1091)
Q Consensus 337 V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~la 412 (1091)
-.++++-.+| +++.|+..|.=.+|.+.....-....+.+.| --..-++|..++.... ...|+
T Consensus 329 ~ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~ 394 (1158)
T 3ei3_A 329 AECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLV 394 (1158)
T ss_dssp CSEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEE
T ss_pred ccEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEE
Confidence 3566666666 4678888777777777543210000001100 1123467777776432 23555
Q ss_pred EEE---CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcC---CCCceEEEEeeCCCcEEEEeCCCCceeEEec--CC
Q 001367 413 VAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GH 484 (1091)
Q Consensus 413 s~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~ 484 (1091)
+++ .+|.+++..-.-+-.......+.+ ...++.+.... ... +|+.+..+.+ .|+.+. ++.+.... +.
T Consensus 395 ~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~gf 469 (1158)
T 3ei3_A 395 TCSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELMGF 469 (1158)
T ss_dssp EEECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCTTC
T ss_pred EEECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCcccccccccc
Confidence 554 456787765432211111112222 23455554432 233 5666665555 455432 22232221 11
Q ss_pred CcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC-CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
......++...-+++ .++=.. ...|++.+.+.......+.... ..|...+.+. .+++.+. .+.+..+.+.
T Consensus 470 ~~~~~TL~~~~l~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel~ 540 (1158)
T 3ei3_A 470 VDDQQTFFCGNVAHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQIH 540 (1158)
T ss_dssp CSSSCEEEEEEETTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEEE
T ss_pred cCCCCcEEEEEcCCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEee
Confidence 111111111111111 222122 2335666655444555555443 3566665543 4555553 1236667766
Q ss_pred CceeeEEEecccccccceEEEEEcCC------CCEEEEEeC-CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEc--cCC
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTA------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN--KNG 634 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~------~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--~~~ 634 (1091)
.++....... . -...|.|+++.|. ++++++|.. |++++|+++.+.+.+........ ....++.+. ...
T Consensus 541 ~~~L~~~~~~-~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~ 617 (1158)
T 3ei3_A 541 PQELRQISHT-E-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESS 617 (1158)
T ss_dssp TTEEEEEEEE-E-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTE
T ss_pred CCceeeeccc-C-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCC
Confidence 5543322111 1 1367999998764 368888986 99999999998777765554322 122333332 234
Q ss_pred CEEEEEECCCeEEEEECC
Q 001367 635 TLLAVIANENRIKILETP 652 (1091)
Q Consensus 635 ~~l~~~~~dg~i~iwd~~ 652 (1091)
.+|.+|-.||.+.-+.+.
T Consensus 618 ~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 618 HYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp EEEEEEETTSEEEEEEEC
T ss_pred cEEEEEeCCCeEEEEEEc
Confidence 578888899988666543
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.84 E-value=8.4e-06 Score=85.53 Aligned_cols=224 Identities=12% Similarity=0.043 Sum_probs=143.2
Q ss_pred ccEEEEEECCCCCEEEEEE-CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 397 VSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
..+..++|++++..|..+. ..+.|..++..++.. .. .+.........+++.+++.. ++++....+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~--~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TT--IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EE--EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EE--EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 4678999999776666554 567999999976542 21 22222346789999998764 4555556789999997644
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEec--CCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
...............+++++. ++.+.++... .+.|..++++.................+++++++..|+.+.. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~-~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeC-CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 322222222245577888543 2344444433 468888887654433333233346788999999888877653 2
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEcc
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 632 (1091)
.+.|..+|.........+.+. .....++.. +..++.+. ..+.|.++|..+++.+..+..... .....+++.|
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~-~~p~gi~~~~ 260 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIAL 260 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEEC
T ss_pred CCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc-cccceeeecC
Confidence 567999998765544333321 234566654 45666655 568999999999999888865431 2357788888
Q ss_pred CCC
Q 001367 633 NGT 635 (1091)
Q Consensus 633 ~~~ 635 (1091)
++.
T Consensus 261 ~~~ 263 (267)
T 1npe_A 261 SQC 263 (267)
T ss_dssp SCC
T ss_pred ccC
Confidence 764
No 249
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.83 E-value=0.00064 Score=79.93 Aligned_cols=527 Identities=9% Similarity=-0.007 Sum_probs=276.8
Q ss_pred eEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE-ECCCEEEEEEee
Q 001367 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYH 426 (1091)
Q Consensus 348 ~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~ 426 (1091)
+|+++ ..+.|+..++.+........ + ..-..+..++|++++..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 45554 33778888887654322100 1 123468899999977666655 456788888887
Q ss_pred CCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEE-
Q 001367 427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI- 505 (1091)
Q Consensus 427 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~- 505 (1091)
+... .. .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.|. +|.+.++-
T Consensus 68 g~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 6432 21 22222245778999877664 4455566788999997654432223233345678888654 34444443
Q ss_pred ecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEE
Q 001367 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585 (1091)
Q Consensus 506 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~ 585 (1091)
+..+.|...+++......... .......++++++++.|+.+-. +.+.|...|+..... ..+.... .....++
T Consensus 143 g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~gla 214 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLT 214 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEE
T ss_pred CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEE
Confidence 235678888877655444443 4456789999998888877653 356789999876543 3333322 3456777
Q ss_pred EcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceE-EEccCCCEEEEEECCCeEEEEECCCCCeecccccc
Q 001367 586 FDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 663 (1091)
Q Consensus 586 ~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 663 (1091)
+.. ..++.+. ..+.|...|..+++....+..... ....+ .+++..+. + ...+. ..
T Consensus 215 v~~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~------------~n~C~----~~ 271 (628)
T 4a0p_A 215 QYQ--DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G------------WNECA----SS 271 (628)
T ss_dssp EET--TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C------------CCTTT----TT
T ss_pred EEC--CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c------------ceEec----cC
Confidence 754 3555544 578899999888776666543321 12222 22221110 0 00000 00
Q ss_pred cccceeeeeccc-cccccccccCCcccCCCCCCCC-------CcccccccccccccccccccCCcccceeecCCcccccc
Q 001367 664 SDNLRKLSVNPI-STVTGAGIANGSVSNEDPKEDV-------KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 735 (1091)
Q Consensus 664 ~~~v~~~~~~~~-~~~~~~~~~~g~~~~~~~s~~~-------~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 735 (1091)
......+++... +.. .+.+..|. ...+|+ ..++.+. ...|+-..+..... ....++. .....
T Consensus 272 ng~C~~~C~~~~~~~~-~C~C~~g~----~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~ 341 (628)
T 4a0p_A 272 NGHCSHLCLAVPVGGF-VCGCPAHY----SLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRN 341 (628)
T ss_dssp GGGCSSEEEEETTTEE-EEECSTTC----EECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSC
T ss_pred CCCcchhhhcCCCCCe-eEEcCCCc----EecccCCcCccccceeeeec-cceEEEEecccccC---ceEEEEe-hhcCC
Confidence 000000111000 100 00111110 001111 2222222 23333333321111 0111111 12345
Q ss_pred EEEEEEecCCCeEEEeec-CceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 736 ISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 736 i~~~~~s~dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
+..++|.+....|+.+.. .+.|..++...... .. +.............+..+|+...++
T Consensus 342 ~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-----------~~---------v~~~~~~~~~~~~~p~glAvD~~~~ 401 (628)
T 4a0p_A 342 VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-----------FT---------VVVSSVPSQNLEIQPYDLSIDIYSR 401 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----------EE---------EEC--------CCCEEEEEEETTTT
T ss_pred ceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-----------eE---------EEEcccccccccCCcceEEeeccCC
Confidence 778999887766665554 46666665432110 00 0000000001234678999999888
Q ss_pred EEEEEe--CCeEEEEEccCceeEEEe-cCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeccCcceeeee-ccccCCe
Q 001367 815 YLFSAS--GGVISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKL-EGHSKRV 888 (1091)
Q Consensus 815 ~la~~~--dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~~la~g~~dg--~i~iwd~~~~~~~~~l-~~h~~~V 888 (1091)
.|..++ .+.|.+.++. |+....+ .........+++.|..|.++.+-.... .|...+++ |.....+ ...-...
T Consensus 402 nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P 479 (628)
T 4a0p_A 402 YIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKP 479 (628)
T ss_dssp EEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCE
T ss_pred eEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCc
Confidence 777665 4789999986 4444333 334467899999995565555433333 56666665 4333333 3234457
Q ss_pred EEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE-EecCeEEEEEcCCc
Q 001367 889 TGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL 966 (1091)
Q Consensus 889 ~~l~~spdg~~las~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~~ 966 (1091)
+.|++.++++.|..+. ..+.|...+++..... .+.. +... ....+++.. +....+ ...+.|...|..+|
T Consensus 480 ~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~---~~~~--~~~~---~P~glav~~-~~ly~tD~~~~~i~~~~k~~G 550 (628)
T 4a0p_A 480 IALALDSRLGKLFWADSDLRRIESSDLSGANRI---VLED--SNIL---QPVGLTVFE-NWLYWIDKQQQMIEKIDMTGR 550 (628)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEC--SSCS---CEEEEEEET-TEEEEEETTTTEEEEEETTSS
T ss_pred cEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceE---EEEc--CCCC---CcEEEEEEC-CEEEEEECCCCeEEEEECcCC
Confidence 8999999877766554 4578999999764311 1211 1111 245666644 333333 24456777777666
Q ss_pred ceeee
Q 001367 967 TCLKQ 971 (1091)
Q Consensus 967 ~~~~~ 971 (1091)
+....
T Consensus 551 ~~~~~ 555 (628)
T 4a0p_A 551 EGRTK 555 (628)
T ss_dssp SCCEE
T ss_pred CCcEE
Confidence 65443
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.82 E-value=1.6e-06 Score=103.79 Aligned_cols=201 Identities=11% Similarity=0.089 Sum_probs=130.3
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcce-----------EEEeecccCCceEEEEEecCCeEEEEecCCCCceeee
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 525 (1091)
.++.++.++.|..+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 46667778899999999999998875432211 11122 2347888889999999999999988766
Q ss_pred cCCCCc-EEEEEEcC--CCCEEEEEecCC--CCceEEEEEecCCceeeEEEecccc------------------------
Q 001367 526 DAPGLG-CTRMAYSA--NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL------------------------ 576 (1091)
Q Consensus 526 ~~~~~~-i~~~~~s~--d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~------------------------ 576 (1091)
...... ...+..+| .+..++++.... ..++.|+.+|..+|+.+-.+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 542110 00011111 133444443221 1257899999999998877753210
Q ss_pred ----cccceEEEEEcCCCCEEEEEeCCCe-------------------EEEEECCCCeeEEEEeCCCCC-------CCCc
Q 001367 577 ----QHNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PENP 626 (1091)
Q Consensus 577 ----~~~~v~~v~~~~~~~~l~~~s~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~v~ 626 (1091)
.......+++.|+...++.++.++. |..+|.++|+.+-.++...+. ....
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 0011124678888889988887763 999999999999888753221 1111
Q ss_pred eEEEccCCC---EEEEEECCCeEEEEECCCCCeecccc
Q 001367 627 RICFNKNGT---LLAVIANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 627 ~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
...+..+|+ .+++++.+|.++++|..+++.+....
T Consensus 304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 122233665 68889999999999999998875543
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.81 E-value=1.2e-05 Score=84.27 Aligned_cols=255 Identities=11% Similarity=0.015 Sum_probs=155.2
Q ss_pred CEEEEEECCCEEEEEEeeCCcccc--eeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCc
Q 001367 409 SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486 (1091)
Q Consensus 409 ~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 486 (1091)
.+|..+.. +.|+.+++.+..... ....+......+..++|++++.. ++++...++.|.++++..+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555543 468888887654211 01112222345789999997764 455555678999999876654333333334
Q ss_pred ceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce
Q 001367 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566 (1091)
Q Consensus 487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 566 (1091)
....+++++. ++.+.++....+.|.+++++.................++++|++..|+.+.... ..+.|..+++....
T Consensus 80 ~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 80 SPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGTN 157 (267)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSCC
T ss_pred CccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCCC
Confidence 5678888543 345566666778999999876544333333334568999999777766554321 13568888875432
Q ss_pred eeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE-CCC
Q 001367 567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NEN 644 (1091)
Q Consensus 567 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg 644 (1091)
...+.... ......+++++++..|+.+. ..+.|.+++............. .....++.. +..++++. ..+
T Consensus 158 -~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d--~~~lyva~~~~~ 229 (267)
T 1npe_A 158 -RRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKTN 229 (267)
T ss_dssp -CEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTTT
T ss_pred -cEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe--CCEEEEEECCCC
Confidence 22332111 24678899999887776655 5689999999865544444321 123456554 45555555 568
Q ss_pred eEEEEECCCCCeeccccccc-ccceeeeeccc
Q 001367 645 RIKILETPESNSVDAAGVLS-DNLRKLSVNPI 675 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~ 675 (1091)
.|..++..+++.+..+.... .....+++.|+
T Consensus 230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred eEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 99999999887776665332 23455555443
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.78 E-value=3.4e-06 Score=100.85 Aligned_cols=194 Identities=13% Similarity=0.156 Sum_probs=130.2
Q ss_pred CCeEEEEEccCceeEEEecCCC--C-----------------------------CeEEEEEcCCCCcEEEEEeCCC----
Q 001367 821 GGVISLYIVMTFKTILTIMPPS--P-----------------------------TATSLAFNPHDNNVIAIGMDDS---- 865 (1091)
Q Consensus 821 dg~i~iwd~~~~~~~~~~~~~~--~-----------------------------~i~~l~~s~~~~~~la~g~~dg---- 865 (1091)
+|.|..+|..+|+.+.++.... . ....++++| +..++++++.++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 3789999999999988765210 0 012468888 666788887776
Q ss_pred ---------------eEEEEeccCcceeeeecc--cc-------CCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCCc
Q 001367 866 ---------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG 918 (1091)
Q Consensus 866 ---------------~i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg~---~las~s~Dg~i~vwd~~~~~ 918 (1091)
.|..+|..+|+.+..++. |. .+.....+..+|+ .++.++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 499999999998876653 32 2232233334675 68889999999999999988
Q ss_pred eeeeeeeec---------cCCCc--------C------CC-----CCceEEEEcCCCCEEEEE-----------------
Q 001367 919 IQTCRSLQT---------PDGVM--------T------LA-----PSETHIQFHKDQTRFLLV----------------- 953 (1091)
Q Consensus 919 ~~~~~~~~~---------~~~~~--------~------~~-----~~i~~l~fs~dg~~la~~----------------- 953 (1091)
......+.. ..+.. . .+ ..-..++++|+...+.+.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 652111100 00000 0 00 001237888887776541
Q ss_pred --------------------ecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEE
Q 001367 954 --------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1013 (1091)
Q Consensus 954 --------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~ 1013 (1091)
.++.|..||..+|+.+.+... ..+.....+...|.++++++.||.|+.||..+|+.+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 137799999999998876543 2233444556678899999999999999999999998
Q ss_pred Eeec
Q 001367 1014 RILS 1017 (1091)
Q Consensus 1014 ~~~~ 1017 (1091)
++..
T Consensus 494 ~~~~ 497 (668)
T 1kv9_A 494 QFEA 497 (668)
T ss_dssp EEEC
T ss_pred EecC
Confidence 7763
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.77 E-value=6.5e-07 Score=91.50 Aligned_cols=199 Identities=12% Similarity=0.077 Sum_probs=137.2
Q ss_pred CeeEEEecCCCCEEEEEe---CCeEEEEEccCceeEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCccee
Q 001367 803 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 878 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~ 878 (1091)
....++|++|+.+.++.+ ++.|+++|+.+++.+.++.... .....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 457899999876555544 4789999999999998876332 233456665 3455566667899999999999988
Q ss_pred eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCe
Q 001367 879 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 957 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~ 957 (1091)
.++...... ...+++||+.|+.+..++.|.++|..+.+......+... +... ..+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~--~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRV--IRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEEC--CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Cccc--ccceeEEEE-CCEEEEecCCCCe
Confidence 887532121 234566888777777788999999988665443222211 1111 135677888 77555544 5689
Q ss_pred EEEEEcCCcceeeeeecCC------------ccCEEEEEEeeCCCEE-EEEEcCCcEEEEeCCCC
Q 001367 958 LAIYEAEELTCLKQWFPIS------------SVPISQATFSCDCRMV-FTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 958 i~vwd~~~~~~~~~~~~~h------------~~~v~~v~fs~dg~~l-~t~~~dg~v~iwd~~~~ 1009 (1091)
|.+.|..+++.+..+..+. ......|+|+|+++.+ +++...+.|.+.++...
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999999888765321 1356889999998754 55556788888887654
No 254
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.72 E-value=8.5e-06 Score=94.89 Aligned_cols=166 Identities=14% Similarity=0.175 Sum_probs=104.4
Q ss_pred EEEEcCCCCcEEEEEeCC----------------CeEEEEeccCcceeeeecc--cc--------CCeEEEEEC-CCC--
Q 001367 847 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL-- 897 (1091)
Q Consensus 847 ~l~~s~~~~~~la~g~~d----------------g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-pdg-- 897 (1091)
.+++.+ ...++..++.+ +.|.-+|..+|+.+..++. |. .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 356666 45566666654 4899999999998866653 21 1222 2222 567
Q ss_pred -CEEEEEeCCCcEEEEEcCCCceeeeeeeec----------cCCCcC---------------------CCCCceEEEEcC
Q 001367 898 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVMT---------------------LAPSETHIQFHK 945 (1091)
Q Consensus 898 -~~las~s~Dg~i~vwd~~~~~~~~~~~~~~----------~~~~~~---------------------~~~~i~~l~fs~ 945 (1091)
+.++.++.+|.+.+.|..+++..-...+.. ..+... -...-..++|+|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567778999999999999987543222110 000000 000113567788
Q ss_pred CCCEEEEE----------------------------------------ecCeEEEEEcCCcceeeeeecCCccCEEEEEE
Q 001367 946 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF 985 (1091)
Q Consensus 946 dg~~la~~----------------------------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~f 985 (1091)
+..++.+. ..+.|..||+.+++.+.+...+ .++..-..
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~ 480 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM 480 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence 77766541 2357888999999887664322 12222223
Q ss_pred eeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 986 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 986 s~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
...|.+++.++.||.++.||..+|+.+-++.
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 4467788889999999999999999987775
No 255
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.70 E-value=3e-06 Score=86.57 Aligned_cols=217 Identities=10% Similarity=0.009 Sum_probs=143.9
Q ss_pred ceeEEEecCCCC--CeEEEEEcCCCCcEEEEEeC--CCeEEEEeccCcceeeeeccccC-CeEEEEECCCCCEEE-EEeC
Q 001367 832 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHSK-RVTGLVFSDALNILV-SSGG 905 (1091)
Q Consensus 832 ~~~~~~~~~~~~--~i~~l~~s~~~~~~la~g~~--dg~i~iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~la-s~s~ 905 (1091)
.+.+.++. |.. ....++|++ ++.+.++.+. ++.|.++|+.+++.+..+.-... ....+++. ++.|. +.-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 45566664 332 468999999 6765555443 57999999999998877642211 22345554 44554 4456
Q ss_pred CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcceeeeeecCC----ccCE
Q 001367 906 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPI 980 (1091)
Q Consensus 906 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h----~~~v 980 (1091)
++.+.++|..+.+.... +.. + .. ....+++||+.|.++ .+++|.++|..+.+.+..+..+. -..+
T Consensus 85 ~~~v~viD~~t~~v~~~--i~~--g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKN--FTH--Q-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp CSEEEEEETTTTEEEEE--EEC--C-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CCEEEEEECCCCcEEEE--EEC--C-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 78999999998664432 221 1 11 123466788877764 46789999999988887765442 1246
Q ss_pred EEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCC---CCcccccceeEEEeCCCCCCeEEEEecCCcEEEE
Q 001367 981 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1057 (1091)
Q Consensus 981 ~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w 1057 (1091)
..+.|. ||+..+....++.|.+.|..+++....+......+. ..+.....+.-++|+|+...+++++...+.|++.
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 778888 786555555678999999999999988874321110 0011123445789999656678888889999999
Q ss_pred ecCCCC
Q 001367 1058 EPNEPG 1063 (1091)
Q Consensus 1058 ~~~~~~ 1063 (1091)
++....
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 996643
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.67 E-value=3.8e-05 Score=89.71 Aligned_cols=196 Identities=8% Similarity=-0.068 Sum_probs=118.1
Q ss_pred EEEecCCCCEEEEEeC-----------------CeEEEEEccCceeEEEecCCC---------CCeEEEEEcCCCC---c
Q 001367 806 CFALSKNDAYLFSASG-----------------GVISLYIVMTFKTILTIMPPS---------PTATSLAFNPHDN---N 856 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~d-----------------g~i~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~~~---~ 856 (1091)
.+++.++...+..+.. +.|..+|..+|+.+..++... ....-+.... +| +
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence 3556666566655541 359999999999987765321 1111122224 56 4
Q ss_pred EEEEEeCCCeEEEEeccCcceeeeecccc-------------CCe--------------------------EEEEECCCC
Q 001367 857 VIAIGMDDSTILIYNARSSEVISKLEGHS-------------KRV--------------------------TGLVFSDAL 897 (1091)
Q Consensus 857 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~spdg 897 (1091)
+++.++.+|.++++|..+|+.+....-.. .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67789999999999999998876543211 111 235778887
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCc
Q 001367 898 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISS 977 (1091)
Q Consensus 898 ~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~ 977 (1091)
.++.....+....++..... ...+..- ...-..+..+|.+. ....++.|..||..+++.+.+...+
T Consensus 398 g~~yv~~~~~~~~~~~~~~~---------~~~g~~~-~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~-- 463 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLP---------YRAGQFF-VGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEK-- 463 (571)
T ss_dssp TEEEEEEECEEEEEEECCCC---------CCTTSCC-CCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEES--
T ss_pred CEEEEEchhccccccccccc---------cccCCcc-ccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCC--
Confidence 88777776655555544321 0011100 00011122233321 0013578999999999887765432
Q ss_pred cCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 978 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 978 ~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
..+....+...+..+++++.||.|+.||..+|+.+-++.
T Consensus 464 ~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 464 FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 223333344556778889999999999999999997776
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.66 E-value=2.7e-05 Score=90.91 Aligned_cols=376 Identities=11% Similarity=0.012 Sum_probs=201.8
Q ss_pred EEEEeeC-CCcEEEEeC-CCCceeEEecCCCcc-e----------EEEeecccCCceEEEEEecCCeEEEEecCCCCcee
Q 001367 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-V----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 523 (1091)
Q Consensus 457 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~-v----------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 523 (1091)
.++.++. ++.|..+|. .+|+.+.++...... + ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3556666 889999999 899998887533210 0 11222 23478888899999999999998887
Q ss_pred eecCCCC----cEE-EEEEcCCCCEEEEEecCC--CCceEEEEEecCCceeeEEEeccccc-------------------
Q 001367 524 DYDAPGL----GCT-RMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 577 (1091)
Q Consensus 524 ~~~~~~~----~i~-~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~------------------- 577 (1091)
....... .+. +... .++ .++++.... ..++.|+.+|..+|+.+-.+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 111 1111 134 455443211 01568999999999988776543200
Q ss_pred ---------------cc-ceEEEEEcCCCCEEEEEeCC----------------CeEEEEECCCCeeEEEEeCCCCC---
Q 001367 578 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL--- 622 (1091)
Q Consensus 578 ---------------~~-~v~~v~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 622 (1091)
.. ....+++.++...++.+..+ +.|..+|.++|+.+-.++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00 00235667777777776542 36999999999998887654210
Q ss_pred -CCCce---EEEccCCC---EEEEEECCCeEEEEECCCCCeecccccccc--cceeeeeccccccccccccCCcccCCCC
Q 001367 623 -PENPR---ICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVSNEDP 693 (1091)
Q Consensus 623 -~~v~~---v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~g~~~~~~~ 693 (1091)
..+.. +....+|+ .++.++.+|.++++|..+++.+........ ....+..
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~--------------------- 356 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL--------------------- 356 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence 01111 22224674 577888899999999999987765432210 0000100
Q ss_pred CCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccce
Q 001367 694 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 773 (1091)
Q Consensus 694 s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 773 (1091)
..+..+..... .. .+.....+..+.......-..++++|+...+++...+....++..+..
T Consensus 357 -~~g~p~~~~~~-------~~---~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~-------- 417 (571)
T 2ad6_A 357 -KTGTPVRDPEF-------AT---RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP-------- 417 (571)
T ss_dssp -TTCSEEECGGG-------CC---CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC--------
T ss_pred -cCCceeccccc-------CC---CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc--------
Confidence 00000000000 00 000000011111000111135688999888888776644444332110
Q ss_pred eeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCC
Q 001367 774 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPH 853 (1091)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~ 853 (1091)
...+. ..-.....+..+|.+. ....+|.|..||..+++.+.++.... .+....+..
T Consensus 418 ----------~~~g~----------~~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t- 473 (571)
T 2ad6_A 418 ----------YRAGQ----------FFVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT- 473 (571)
T ss_dssp ----------CCTTS----------CCCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-
T ss_pred ----------cccCC----------ccccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-
Confidence 00010 0000011122233321 00124789999999998887765322 222222222
Q ss_pred CCcEEEEEeCCCeEEEEeccCcceeeeeccccCC-eEEEEECCCCCEEEE
Q 001367 854 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 902 (1091)
Q Consensus 854 ~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~las 902 (1091)
.+.++++++.||.|+.+|..+|+.+.++...... -..+.+..+|+.++.
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 3446777999999999999999998877643221 122345567765543
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.62 E-value=2.3e-05 Score=91.31 Aligned_cols=378 Identities=11% Similarity=0.039 Sum_probs=199.7
Q ss_pred EEEEeeC-CCcEEEEeC-CCCceeEEecCCCcc-----------eEEEeecccC--CceEEEEEecCCeEEEEecCCCCc
Q 001367 457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKE--NIHFIFSISVDGKIKAWLYDSLGA 521 (1091)
Q Consensus 457 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~ 521 (1091)
.++.++. ++.|.-+|. .+|+.+.++...... ...+++.+.. ....++.++.|+.+.-+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4666666 889999999 899999887543221 1122331111 112378888999999999999988
Q ss_pred eeeecCCCC----cEE-EEEEcCCCCEEEEEecCC--CCceEEEEEecCCceeeEEEecccccc----------------
Q 001367 522 RVDYDAPGL----GCT-RMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQH---------------- 578 (1091)
Q Consensus 522 ~~~~~~~~~----~i~-~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~---------------- 578 (1091)
+........ .+. ...+ .++ .+++++... ..++.|+-+|..+|+.+-.+.......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 876544321 111 1111 144 444443211 025789999999999887765432100
Q ss_pred ------------------cce-EEEEEcCCCCEEEEEeCC----------------CeEEEEECCCCeeEEEEeCCCCCC
Q 001367 579 ------------------NSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP 623 (1091)
Q Consensus 579 ------------------~~v-~~v~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 623 (1091)
..+ ...++.++...++.+..+ +.|..+|.++|+.+-.++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 000 134566777888887665 389999999999998877643210
Q ss_pred ----CCce-EEEc---cCC---CEEEEEECCCeEEEEECCCCCeeccccccccc--ceeeeeccccccccccccCCcccC
Q 001367 624 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSN 690 (1091)
Q Consensus 624 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~g~~~~ 690 (1091)
.... +.+. .+| +.++.++.+|.++++|..+++.+......... ...+..
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~------------------ 363 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL------------------ 363 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT------------------
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc------------------
Confidence 0111 2222 467 56777889999999999999877654321100 000000
Q ss_pred CCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccc
Q 001367 691 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 770 (1091)
Q Consensus 691 ~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~ 770 (1091)
+.++.+.... ... .+.....+..|.......-..++++|+...+++...+....++-.+..
T Consensus 364 ----~~g~p~~~~~---------~~~-~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~----- 424 (599)
T 1w6s_A 364 ----KTGQPVRDPE---------YGT-RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP----- 424 (599)
T ss_dssp ----TTCCEEECGG---------GCC-CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC-----
T ss_pred ----CCCceeeccc---------cCC-CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc-----
Confidence 0000000000 000 000001111111111122235789999887777766533322211000
Q ss_pred cceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEE-EE
Q 001367 771 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATS-LA 849 (1091)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~-l~ 849 (1091)
...+.. .-..-..+..+|.+........|.|..||+.+++.+.+.......... ++
T Consensus 425 -------------~~~g~~----------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~ 481 (599)
T 1w6s_A 425 -------------YKAGQF----------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMA 481 (599)
T ss_dssp -------------CCTTSC----------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEE
T ss_pred -------------ccCCcc----------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceE
Confidence 000100 000000011122110000002477889999999887766422111111 22
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCe-EEEEECCCCCE
Q 001367 850 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNI 899 (1091)
Q Consensus 850 ~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~ 899 (1091)
. .+.++++++.||.++.||..+|+.+.+++-..+.+ .-+.+..||+.
T Consensus 482 t---agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 482 T---AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp E---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred e---cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 2 34467779999999999999999998776433221 22455567764
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.61 E-value=6.2e-05 Score=87.95 Aligned_cols=377 Identities=12% Similarity=0.083 Sum_probs=199.4
Q ss_pred EEEeeCCCcEEEEeCCCCceeEEecCCCcce---------EEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCC
Q 001367 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 528 (1091)
Q Consensus 458 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 528 (1091)
++.++.++.|..+|..+|+.+.++....... ..+++ .+..++.++.++.|.-+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445553449999999999988875433210 11122 2246788889999999999999988765443
Q ss_pred CC----cEE-EEEEcC---CCC-EEEEEecCC--CCceEEEEEecCCceeeEEEeccccc--------------------
Q 001367 529 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------- 577 (1091)
Q Consensus 529 ~~----~i~-~~~~s~---d~~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------- 577 (1091)
.. .+. ...+.. +|+ .++++.... ..++.|+-+|..+|+.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 233 454443211 12678999999999887655431100
Q ss_pred ------------------ccceEEEEEcCCCCEEEEEeC--------------------C----CeEEEEECCCCeeEEE
Q 001367 578 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT 615 (1091)
Q Consensus 578 ------------------~~~v~~v~~~~~~~~l~~~s~--------------------d----g~i~iwd~~~~~~~~~ 615 (1091)
...-...++.|+...++.+.. | +.|..+|..+|+.+-.
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 000123566777788887663 2 5899999999999988
Q ss_pred EeCCCCC----CCCce-EEEc---cCCC---EEEEEECCCeEEEEECCCCCeecccccccc--cceeeeecccccccccc
Q 001367 616 IDAGGGL----PENPR-ICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG 682 (1091)
Q Consensus 616 ~~~~~~~----~~v~~-v~~s---~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~ 682 (1091)
++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+++.+........ ....+.... ++.
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~-g~p---- 381 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKT-GRP---- 381 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTT-CCE----
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccC-CCE----
Confidence 7653221 01111 2222 4674 788899999999999999988766543321 111111000 000
Q ss_pred ccCCcccCCCCCCCCCcccccccccccccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeec
Q 001367 683 IANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 762 (1091)
Q Consensus 683 ~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~ 762 (1091)
+....+.|.. +.. .+ +........|.......-..++++|+...+++...+-...++..
T Consensus 382 -----~~~~~~~~~~--~~~--~~------------~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~ 440 (582)
T 1flg_A 382 -----VEREGQRPPL--PEP--GQ------------KHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTE 440 (582)
T ss_dssp -----EECTTCSCCC--CCT--TC------------SSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEEC
T ss_pred -----eEccccCCcc--ccc--cc------------cCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecc
Confidence 0000001000 000 00 00000111111101111125678888776776665533333321
Q ss_pred CCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCC
Q 001367 763 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS 842 (1091)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~ 842 (1091)
+.. ...| ....-..+...|++. ..+|.|..||+.+++.+.+.....
T Consensus 441 ~~~------------------~~~g------------~~~~g~~~~~~p~~~----~~~G~l~A~D~~tG~~~W~~~~~~ 486 (582)
T 1flg_A 441 EVS------------------YTKG------------SAYLGMGFRIKRMYD----DHVGSLRAMDPVSGKVVWEHKEHL 486 (582)
T ss_dssp CCC------------------CCTT------------SCCCCEEEEEEESCS----SCSEEEEEECTTTCCEEEEEEESS
T ss_pred ccc------------------ccCC------------CceeccceeecCCCC----CCcceEEEEECCCCCEEEEecCCC
Confidence 100 0001 111111122223310 125789999999999887665332
Q ss_pred CCeE-EEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeeccccCCe-EEEEECCCCCEEE
Q 001367 843 PTAT-SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV 901 (1091)
Q Consensus 843 ~~i~-~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~la 901 (1091)
.... .++. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..||+..+
T Consensus 487 ~~~~g~~~t---agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 487 PLWAGVLAT---AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp CCCSCCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCcccceEe---CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 2111 1222 24477779999999999999999998887543322 2256667776443
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.57 E-value=9.9e-05 Score=86.22 Aligned_cols=149 Identities=12% Similarity=0.089 Sum_probs=95.1
Q ss_pred CeEEEEeccCcceeeeecc--cc--------CCeEEEEEC-CCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeec---
Q 001367 865 STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT--- 927 (1091)
Q Consensus 865 g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-pdg~---~las~s~Dg~i~vwd~~~~~~~~~~~~~~--- 927 (1091)
+.|.-+|..+|+.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+++..-......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 6899999999998876642 32 1221 1221 4674 78889999999999999987543221110
Q ss_pred ---------------cCCCc--------C------CC-----CCceEEEEcCCCCEEEE-Ee------------------
Q 001367 928 ---------------PDGVM--------T------LA-----PSETHIQFHKDQTRFLL-VH------------------ 954 (1091)
Q Consensus 928 ---------------~~~~~--------~------~~-----~~i~~l~fs~dg~~la~-~~------------------ 954 (1091)
..... . .+ ..-..++++|+...+.+ ..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00000 0 00 00124677887665554 21
Q ss_pred ---------------cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 955 ---------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 955 ---------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
++.|..||+.+|+.+.+...+ .++..-.....|.++++++.||.++.||..+|+.+-++.
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 467999999999988665432 222222233456788889999999999999999997776
No 261
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.55 E-value=1.2e-05 Score=97.92 Aligned_cols=248 Identities=10% Similarity=-0.004 Sum_probs=135.0
Q ss_pred CcEEEEEc-CCCceEEEEEcCCC----cEEEEEcCCC-CceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCC
Q 001367 336 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409 (1091)
Q Consensus 336 ~V~~v~fs-pdg~~llasg~~dg----~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 409 (1091)
.+...+|| |||++++.+.+.+| +|+++|+.+| +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 57889999 99997655554443 4999999998 64321 0 11 1134688999999
Q ss_pred EEEEEECC-----CEEEEEEeeCCcccceeEEEe-ccccCeeEEEEcCCCCceEEEEee-CCCcEEEEeCCCCc-ee--E
Q 001367 410 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y 479 (1091)
Q Consensus 410 ~las~~~d-----~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~-~~--~ 479 (1091)
.|+....+ ..|+++++.++...... .+. ........+.|||||+++++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99888765 36788888776432111 222 223346788999999963333322 23468889988763 22 3
Q ss_pred Eec-CCCcceEEEeecccCCceEEEEEecC--C--eEEEEecCCCCceee-ecCCCC--cEEEEEEcCCCCEEEEEecCC
Q 001367 480 SFE-GHGAPVYSLCPHAKENIHFIFSISVD--G--KIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 480 ~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~iwd~~~~~~~~~-~~~~~~--~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
.+. .......++.|+ .++.+++....+ + .|..+++.+...... +..+.. .+..+.+ ++..|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 342 334455555432 233344444443 2 566667654222122 222222 3444444 4566655443 2
Q ss_pred CCceEEEEEec-------CCceeeEEEecccccccceEEEEE----cCCCCEE-EEEeC---CCeEEEEECCCCee
Q 001367 552 EGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGD---DHVIKIWDMNKVQL 612 (1091)
Q Consensus 552 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~v~~----~~~~~~l-~~~s~---dg~i~iwd~~~~~~ 612 (1091)
++...|+++++ .+++....+.... ...+..+.+ ++++..+ ++.+. -+.++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34667888886 3443123332211 112233322 3455544 44332 24677888877764
No 262
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.54 E-value=5e-06 Score=83.62 Aligned_cols=185 Identities=12% Similarity=0.105 Sum_probs=124.9
Q ss_pred CeeEEEecCCCCEEEEEe-CC--eEEEEEccCceeEEEecCCCCC-eEEEEEcCCCCcEEEEEeCCCeEEEEeccCccee
Q 001367 803 AVPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 878 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~-dg--~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~ 878 (1091)
-...+.|+ ++.+..+.+ +| .|+.+|+++++.++++...... ...+++. ++++.+..-.++.+.+||..+.+.+
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence 34788898 666555555 44 7999999999999888644322 2335554 4455555556899999999999999
Q ss_pred eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCe
Q 001367 879 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 957 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~ 957 (1091)
.++.... ....+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.|. +|+..|.. .++.
T Consensus 121 ~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 121 RSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCe
Confidence 8887432 223344577777766667889999999876554333321 12111 134457776 77766554 5779
Q ss_pred EEEEEcCCcceeeeeecCC-----------ccCEEEEEEeeCCCEEEEEEc
Q 001367 958 LAIYEAEELTCLKQWFPIS-----------SVPISQATFSCDCRMVFTSFV 997 (1091)
Q Consensus 958 i~vwd~~~~~~~~~~~~~h-----------~~~v~~v~fs~dg~~l~t~~~ 997 (1091)
|.+.|.++|+.+..+..+. ..-...|+|+|+++.|++.+.
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999999887754321 234578999999888777665
No 263
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.50 E-value=0.0071 Score=73.88 Aligned_cols=572 Identities=13% Similarity=0.083 Sum_probs=299.0
Q ss_pred CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 413 (1091)
...|.++.-..+|... .|+.+| +..||-.+ ... +. . . -......|.++....+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~---~~~--~~---~------~----~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW--IGSNKG-LFSYDGYS---TQQ--HF---T------Y----GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSCEE--EEESSC-EEEECSSC---EEE--CS---C------T----TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCCEE--EEECCC-ccccCCCc---eEE--EE---c------c----CCCCCceEEEEEEcCCC-cEEE
Confidence 3489999999999733 344555 55666221 111 00 0 0 00123578888877766 5555
Q ss_pred EECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEec-----CCCcce
Q 001367 414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPV 488 (1091)
Q Consensus 414 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v 488 (1091)
|+.+| +..||..++..... .......|.++.. .+|. |..++.+ -+..+|..+++.. .+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~~---~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQP---ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECCC---SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEECc---ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 66665 78999877532110 0112234776654 3554 4445544 5888997766543 231 123456
Q ss_pred EEEeecccCCceEEEEEecCCeEEEEecCCCCceee-ecC----CCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecC
Q 001367 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 563 (1091)
Q Consensus 489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 563 (1091)
.++.. +.++.+. .++.+| +..++..+...... ... ....|.++...+++..|..+.. +-+..+|..
T Consensus 149 ~~i~~--d~~g~lW-igt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIR--TKDNQIY-VGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS 219 (758)
T ss_dssp EEEEE--CTTCCEE-EEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred EEEEE--cCCCCEE-EEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence 66665 3344444 455544 66677655432211 111 1224788888777765555442 128889987
Q ss_pred CceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC-----CCCCCceEEEccCCCEEE
Q 001367 564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 564 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~ 638 (1091)
+++........ ...|.++....++... .|+. +-+.+++..+++......... ....|.++....+|. |.
T Consensus 220 ~~~~~~~~~l~---~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 293 (758)
T 3ott_A 220 TGQIKQTEAFH---NNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IW 293 (758)
T ss_dssp TTEEEEEEEEE---EEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EE
T ss_pred CCeEEeccCCC---CCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EE
Confidence 76543322111 2468888887777654 4454 458888887765433221111 112466676666665 44
Q ss_pred EEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCcccccccccccccccccccC
Q 001367 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKSEVEKPLFAR 718 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i~~w~~~~~~ 718 (1091)
+|+..| +.++.... .+.... ...
T Consensus 294 iGT~~G-l~~~~~~~--~~~~~~----------~~~-------------------------------------------- 316 (758)
T 3ott_A 294 LGTDYG-ISLSRYNS--ALQFIP----------ISQ-------------------------------------------- 316 (758)
T ss_dssp EEESSS-EEEECCCC---CEEEE----------HHH--------------------------------------------
T ss_pred EEeCCc-ccccccCC--ceeEEe----------ccc--------------------------------------------
Confidence 555555 44332111 110000 000
Q ss_pred CcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCC
Q 001367 719 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 798 (1091)
Q Consensus 719 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1091)
.........|.++....+|...+. +.+| +..++...... .....+...... ..
T Consensus 317 --------~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~---------~~~~~~~~~~~~----~~---- 369 (758)
T 3ott_A 317 --------ITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGER---------HDAIWYRMGDKT----YP---- 369 (758)
T ss_dssp --------HSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSC---------CCCEEECTTCSS----SC----
T ss_pred --------CCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccccccc---------ceeEEeccCCcC----CC----
Confidence 000002235777777778875444 4455 33443221100 000111110000 00
Q ss_pred CCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEe--cC----CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEec
Q 001367 799 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 799 ~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~ 872 (1091)
-....|.++...++|++.+.. ++.+..||..+++...-. .. ....|.++...+ ++++ -.|+..+-+.++|.
T Consensus 370 l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~l-WigT~~~Gl~~~~~ 446 (758)
T 3ott_A 370 LSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQL-WISTCLGGIFVVDK 446 (758)
T ss_dssp CSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEE-EEEESSSCEEEEEH
T ss_pred CCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCE-EEEECCCceEEEcc
Confidence 023568899988888877655 668999998877654321 11 234578888877 5654 44776666888886
Q ss_pred cCc-----cee---eeec---c-ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceE
Q 001367 873 RSS-----EVI---SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 940 (1091)
Q Consensus 873 ~~~-----~~~---~~l~---~-h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 940 (1091)
.+. ... ..+. + ....|.++...++|++.+.++..+-|..+|..+++... +.. .+.. ....+.+
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~---~~~-~~~~-~~~~~~~ 521 (758)
T 3ott_A 447 HKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK---LFA-DELT-GEKSPNY 521 (758)
T ss_dssp HHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE---ECT-TTSC-GGGCEEE
T ss_pred ccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE---ecC-CCcC-CCcccce
Confidence 531 111 1111 1 12358999999999887644444558889988765332 111 1110 0124778
Q ss_pred EEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecC-CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeeccc
Q 001367 941 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1019 (1091)
Q Consensus 941 l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~ 1019 (1091)
+....+|.+.+.+. +.+..||..++....-...+ ....|.++... +|.+.+ ++..| +..++..+..... +.
T Consensus 522 i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~lWi-~t~~G-l~~~~~~~~~~~~-~~--- 593 (758)
T 3ott_A 522 LLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNSIWV-STTNG-LWIIDRKTMDARQ-QN--- 593 (758)
T ss_dssp EEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTEEEE-EESSC-EEEEETTTCCEEE-C----
T ss_pred EEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCCEEE-ECCCC-eEEEcCCCceeEE-ec---
Confidence 88889998887654 56888887665432210111 13567888763 665444 55565 7788888765432 11
Q ss_pred ccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCC
Q 001367 1020 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 1020 ~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~ 1061 (1091)
++.. .+.. .+...+ ...|..|+.+|- ..++...
T Consensus 594 -~~~~----~~~~-~~~~~~--~G~l~fG~~~Gl-~~f~p~~ 626 (758)
T 3ott_A 594 -MTNK----RFTS-LLFDPK--EDCVYLGGADGF-GISHSNL 626 (758)
T ss_dssp --CCC----CCSE-EEEETT--TTEEEEECBSEE-EEEEC--
T ss_pred -CCCC----ceee-eEEECC--CCcEEEecCCce-EEEChhh
Confidence 1221 1221 222233 356777877774 4556543
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.48 E-value=1.4e-05 Score=80.40 Aligned_cols=184 Identities=14% Similarity=0.077 Sum_probs=128.4
Q ss_pred eeEEEEcCCCCceEEEEeeCCC--cEEEEeCCCCceeEEecCCCcce-EEEeecccCCceEEEEEecCCeEEEEecCCCC
Q 001367 444 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 520 (1091)
Q Consensus 444 v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 520 (1091)
...+.|+ ++. ++++.+.+| .|+++|+++|+.+.++....... -.+++ .+ +.+.+..-.++.+.++|..+.+
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eC-CEEEEEEeeCCEEEEEECccCc
Confidence 4778888 554 666777665 89999999999998875433221 22443 32 3455555668999999999999
Q ss_pred ceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccc--cccceEEEEEcCCCCEEEEEe-
Q 001367 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAG- 597 (1091)
Q Consensus 521 ~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~s- 597 (1091)
....+..... ...+++|++.|+... +...|.++|..+.+.+..+..... ....++.+.|. +|. +++..
T Consensus 119 ~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w 189 (262)
T 3nol_A 119 QVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVW 189 (262)
T ss_dssp EEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET
T ss_pred EEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEc
Confidence 8887765432 234446788777753 256799999999988887765320 11334567776 564 55544
Q ss_pred CCCeEEEEECCCCeeEEEEeCCCC----------CCCCceEEEccCCCEEEEEEC
Q 001367 598 DDHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
.++.|.+.|..+++.+..+...+- ....+.++++|+++.|++.+.
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 688999999999999999876421 123478999999888887766
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.46 E-value=5.7e-06 Score=83.09 Aligned_cols=184 Identities=9% Similarity=0.084 Sum_probs=123.9
Q ss_pred CCeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCe--EEEEEcCCCCcEEEEEeCCCeEEEEeccCccee
Q 001367 802 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 878 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~ 878 (1091)
.-...+.|+. +.+..+.+ +|.|+++|+++++.++.+ .. ... ..+++. ++++.+..-.++.+.+||..+.+.+
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence 3446788873 44444444 688999999999998887 22 233 346664 4456666667899999999999999
Q ss_pred eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCe
Q 001367 879 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 957 (1091)
Q Consensus 879 ~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~ 957 (1091)
.++... ..-..++ +|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.|. +|+..|.. .++.
T Consensus 130 ~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~v--~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 130 RTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQPV--ELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTCSE
T ss_pred EEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCccc--ccccccEEe-CCEEEEEECCCCe
Confidence 888742 2223444 578888877778999999999876554333322 11111 134567776 77655554 5679
Q ss_pred EEEEEcCCcceeeeeecC----------C--ccCEEEEEEeeCCCEEEEEEc
Q 001367 958 LAIYEAEELTCLKQWFPI----------S--SVPISQATFSCDCRMVFTSFV 997 (1091)
Q Consensus 958 i~vwd~~~~~~~~~~~~~----------h--~~~v~~v~fs~dg~~l~t~~~ 997 (1091)
|.+.|.++|+.+..+..+ + ..-...|+++|+++.|++.+.
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999999988765432 1 235578999998766555543
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.45 E-value=9.7e-05 Score=79.85 Aligned_cols=239 Identities=11% Similarity=0.065 Sum_probs=145.2
Q ss_pred CeeEEEecCCCCEEEEEe-CCeEEEEEccCceeEEEe-cC------------------CCCCeEEEEEcCCCCcEEEEEe
Q 001367 803 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-MP------------------PSPTATSLAFNPHDNNVIAIGM 862 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~-~~------------------~~~~i~~l~~s~~~~~~la~g~ 862 (1091)
...+++++++|+++.++. ++.|..|+..+++...-. .. ....+..+++.+++++ |.++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 456788999998666665 688999988765433211 00 0135788999973454 44455
Q ss_pred CCCeEEEEeccCcceeeeec----c-ccCCeEEEEECC-CCCEEEEEeC-----------------CCcEEEEEcCCCce
Q 001367 863 DDSTILIYNARSSEVISKLE----G-HSKRVTGLVFSD-ALNILVSSGG-----------------DAQIFVWDVDGWGI 919 (1091)
Q Consensus 863 ~dg~i~iwd~~~~~~~~~l~----~-h~~~V~~l~~sp-dg~~las~s~-----------------Dg~i~vwd~~~~~~ 919 (1091)
..+.|..+|..+++. ..+. + .......+++.+ +|++.++-.. ++.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 556688898876543 2221 1 123478899999 9988776532 36788888876553
Q ss_pred eeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcCCcc--eeeeeecCCccCEEEEEEeeCCCEEEEE
Q 001367 920 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTS 995 (1091)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~v~fs~dg~~l~t~ 995 (1091)
.. ...... ....++|+|||+.|.++ ..+.|.+|++.... ....+.. ..+ ...+++.++|.+.++.
T Consensus 178 ~~--~~~~~~-------~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 178 TL--LLKELH-------VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp EE--EEEEES-------CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEE
T ss_pred EE--eccCCc-------cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEe
Confidence 22 111111 24579999999977664 45789999987532 1111111 123 7789999999877765
Q ss_pred Ec----------CCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCC
Q 001367 996 FV----------DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1063 (1091)
Q Consensus 996 ~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~ 1063 (1091)
.. .+.|..+|.. |+.+..+......+ ...+. .+++. ++.++++...++.|..+++....
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~----~~~~~--~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA----GEHFE--QIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT----TSCCC--EEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred cCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc----cccce--EEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 44 4668888864 66666554221110 11122 33443 46677776778899999985443
No 267
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.42 E-value=0.00054 Score=73.82 Aligned_cols=279 Identities=9% Similarity=0.061 Sum_probs=151.1
Q ss_pred cccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCC
Q 001367 733 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 812 (1091)
Q Consensus 733 ~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 812 (1091)
...+.++.|.+++..++ ++..|.+... .+.. +-|.... .........+.++++.+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~s-~DgG--------------~tW~~~~--------~~~~~~~~~~~~i~~~~- 89 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLMET-RDGG--------------QTWEPRT--------LVLDHSDYRFNSVSFQG- 89 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEEEE-SSTT--------------SSCEECC--------CCCSCCCCEEEEEEEET-
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEEEe-CCCC--------------CCCeECC--------CCCCCCCccEEEEEecC-
Confidence 34688888887777566 4556654321 1111 1122111 00001244678899986
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEec---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce-eeeeccccCCe
Q 001367 813 DAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRV 888 (1091)
Q Consensus 813 g~~la~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~-~~~l~~h~~~V 888 (1091)
+..++++..+.|.. ....|+.-.... .....+..+++.+ ++.+++++ .+|.|.. ..+.|+. .....++...+
T Consensus 90 ~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~ 165 (327)
T 2xbg_A 90 NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVM 165 (327)
T ss_dssp TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCE
T ss_pred CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcce
Confidence 55666666675443 222233222222 2234577888877 67666655 4554432 2222332 22223455678
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcce
Q 001367 889 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 968 (1091)
Q Consensus 889 ~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~ 968 (1091)
.++++.+++.+++.+...+..+-+|-.... ...+.. ... ..+..++++++++.++++.+|.+++.+...|+.
T Consensus 166 ~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t---W~~~~~--~~~---~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 166 RNLNRSPSGEYVAVSSRGSFYSTWEPGQTA---WEPHNR--TTS---RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp EEEEECTTSCEEEEETTSSEEEEECTTCSS---CEEEEC--CSS---SCEEEEEECTTSCEEEEETTTEEEEEETTEEEE
T ss_pred EEEEEcCCCcEEEEECCCcEEEEeCCCCCc---eeECCC--CCC---CccceeEECCCCCEEEEeCCceEEEecCCCCCe
Confidence 999999999888766443333333321111 111211 111 257889999999988888888888775333443
Q ss_pred eeeeecC---CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeE
Q 001367 969 LKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1045 (1091)
Q Consensus 969 ~~~~~~~---h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1045 (1091)
-.....+ +...+..+.+.+++..++++ .+|.| .+..+.|+.-..+......+. .++ .+.|.+ +..+
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~~--~v~~~~--~~~~ 306 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NFY--KILFFS--PDQG 306 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CCC--EEEEEE--TTEE
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----CeE--EEEEEC--CCce
Confidence 3322212 23458899999888877754 57777 456666644333221111111 244 344543 3567
Q ss_pred EEEecCCcEEEEec
Q 001367 1046 AVGLTNGEVYVIEP 1059 (1091)
Q Consensus 1046 ~~g~~dg~v~~w~~ 1059 (1091)
++++.+|.|.-++-
T Consensus 307 ~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 307 FILGQKGILLRYVT 320 (327)
T ss_dssp EEECSTTEEEEECC
T ss_pred EEEcCCceEEEEcC
Confidence 78888997766553
No 268
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.42 E-value=0.0001 Score=79.57 Aligned_cols=263 Identities=10% Similarity=0.011 Sum_probs=147.3
Q ss_pred cccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccc--e-ee---eeecCCCccEEEEE
Q 001367 330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML--F-KT---ALVRDPGVSVNRVV 403 (1091)
Q Consensus 330 l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~--~-~~---~~~~~h~~~V~~l~ 403 (1091)
+.+.-....+++|+++|+ ++.++..++.|..|+..+++... |........ . .. .........+..++
T Consensus 14 ~~g~~~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~ 86 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDIS 86 (322)
T ss_dssp EECSSSCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEE
T ss_pred cCCccCCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEE
Confidence 344334678899999997 55778888999999987664321 100000000 0 00 00000113578999
Q ss_pred ECC-CCCEEEEEECCCEEEEEEeeCCcccceeE-EEec-cccCeeEEEEcC-CCCceEEEEeeC----------------
Q 001367 404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQL-EIDA-HVGNVNDLAFSA-PCKQISVITCGD---------------- 463 (1091)
Q Consensus 404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~-~~~~-h~~~v~~~~~s~-d~~~~~l~s~~~---------------- 463 (1091)
+.+ +|+ |.++...+.|..+|..++.. +.+. ...+ .......+++.+ +|. +.++...
T Consensus 87 ~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 87 YNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp EETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTC
T ss_pred EcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccC
Confidence 998 554 55554555588888765432 2111 1111 113478899999 887 4444322
Q ss_pred -CCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEE-EEEecCCeEEEEecCCCC--ceeeecCCCCcEEEEEEcC
Q 001367 464 -DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA 539 (1091)
Q Consensus 464 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~ 539 (1091)
++.|..||..+++...... .......++++ +++..| ++-+..+.|..+++.... ....+....+ ...+++.+
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~ 238 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLK-ELHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA 238 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT
T ss_pred CCceEEEEeCCCCEEEEecc-CCccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC
Confidence 3678899987776432222 11234557774 466544 454667899999987532 1111111222 67899999
Q ss_pred CCCEEEEEecCC------CCceEEEEEecCCceeeEEEeccccc-ccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001367 540 NGRRLFSCGTSK------EGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 540 d~~~l~~~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
+|+..++..... ...+.|..+|.. ++.+..+...... ...+..+++ .++..+++....+.|.++++..
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 998766654210 013568888874 6766666543210 134566666 3444444444677888888754
No 269
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.39 E-value=3.5e-05 Score=76.89 Aligned_cols=187 Identities=10% Similarity=0.039 Sum_probs=125.3
Q ss_pred CCCeeEEEecCCCCEEEEEe-C--CeEEEEEccCceeEEEecCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc
Q 001367 801 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 876 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~-d--g~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~ 876 (1091)
..-...+.|++ +.+..+.+ + +.|+.+|+.+++.++.+..... .-..+++. ++++.+..-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34566889986 45555544 2 4899999999999988864433 22345554 45566666678999999999999
Q ss_pred eeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ec
Q 001367 877 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 955 (1091)
Q Consensus 877 ~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d 955 (1091)
.+.++.... .-..++ +|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.+. +|+..|.. .+
T Consensus 97 ~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~--~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPL--DNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCccc--ccceeeEEe-CCEEEEEECCC
Confidence 998887432 223444 567777666678899999999876544333322 11111 134455655 67666554 57
Q ss_pred CeEEEEEcCCcceeeeeecC------------CccCEEEEEEeeCCCEEEEEEc
Q 001367 956 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 997 (1091)
Q Consensus 956 ~~i~vwd~~~~~~~~~~~~~------------h~~~v~~v~fs~dg~~l~t~~~ 997 (1091)
+.|.+.|.++|+.+..+..+ ...-...|+++|+++.|++.+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 79999999999988765422 1234578999998877776654
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.38 E-value=0.00013 Score=78.20 Aligned_cols=229 Identities=13% Similarity=0.107 Sum_probs=137.5
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEee-CCC-cEEEEeCCC
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK-TIKVWDAVT 474 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~-~d~-~i~iwd~~~ 474 (1091)
.....++|+++|+++++-..++.|..||..++. ... + ........+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 457789999999977776678899999877532 111 1 2234688999999998 444443 332 477778777
Q ss_pred CceeEEecC-CCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee-e-------c--CCCCcEEEEEEcCCCCE
Q 001367 475 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR 543 (1091)
Q Consensus 475 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~d~~~ 543 (1091)
++....... .......++. ..++..+++...++.|..+|......... . . ..-.....+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~--~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccc--cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 765432221 1122233443 22344455555688888888765321111 0 0 111133445 788888
Q ss_pred EEEEecCCCCceEEEEEecCC-cee--eEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001367 544 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620 (1091)
Q Consensus 544 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 620 (1091)
|+.+.. ..+.|..+++.. ++. ...+.. ......+++.++|+.+++....+.|.+++.. ++.........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 777653 356799999864 322 112211 1235668899999876666678899999975 55533222222
Q ss_pred CCCCCceEEEc---cCCCEEEEEECCC
Q 001367 621 GLPENPRICFN---KNGTLLAVIANEN 644 (1091)
Q Consensus 621 ~~~~v~~v~~s---~~~~~l~~~~~dg 644 (1091)
......+++|. |+++.|++.+..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 22356889998 8888777776643
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.38 E-value=0.0001 Score=78.98 Aligned_cols=240 Identities=11% Similarity=0.035 Sum_probs=139.7
Q ss_pred hheeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEE
Q 001367 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 403 (1091)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 403 (1091)
.+++..+..+ .....++|+|+|+ |+++-..++.|..||..++ .... +. ....+..++
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~~-----~~---------------~~~~p~gia 78 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQIH-----AT---------------VEGKVSGLA 78 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEEE-----EE---------------CSSEEEEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEEE-----Ee---------------CCCCceeEE
Confidence 3445555443 3788999999998 7677767899999997653 2211 11 224688999
Q ss_pred ECCCCCEEEEEECC-C-EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce-eEE
Q 001367 404 WSPDGSLLGVAYSK-H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYS 480 (1091)
Q Consensus 404 ~spdg~~las~~~d-~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~ 480 (1091)
+.++|+++++.... + .|..++..+++. .....+. .......++..+++. .+++...++.|.++|..+++. +..
T Consensus 79 ~~~dG~l~vad~~~~~~~v~~~d~~~g~~-~~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~~ 154 (306)
T 2p4o_A 79 FTSNGDLVATGWNADSIPVVSLVKSDGTV-ETLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWL 154 (306)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTSCE-EEEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EcCCCcEEEEeccCCcceEEEEcCCCCeE-EEEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEEE
Confidence 99999976665443 2 466677677653 2221221 122234555555554 455555688999999776531 211
Q ss_pred ec---------CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCc---eeeecCCCCcEEEEEEcCCCCEEEEEe
Q 001367 481 FE---------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCG 548 (1091)
Q Consensus 481 ~~---------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~~~~ 548 (1091)
.. ..-...+.+ +++ .+.++++-...+.|..++++.... ...+. .......++++++|+..++..
T Consensus 155 ~~~~~~~~~~~~~~~~pngi--s~d-g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~ 230 (306)
T 2p4o_A 155 EHPMLARSNSESVFPAANGL--KRF-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATH 230 (306)
T ss_dssp ECGGGSCSSTTCCSCSEEEE--EEE-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECB
T ss_pred ECCccccccccCCCCcCCCc--CcC-CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeC
Confidence 11 111123334 322 224556666778999999875211 11111 012345689999998766554
Q ss_pred cCCCCceEEEEEecCCceeeEEEecccccccceEEEEEc---CCCCEEEEEeCCC
Q 001367 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD---TAKDQILAAGDDH 600 (1091)
Q Consensus 549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~~l~~~s~dg 600 (1091)
. .+.|.++|.. ++......... ......+++|. |+++.|++++..+
T Consensus 231 ~----~~~V~~~~~~-G~~~~~~~~~~-~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 231 I----YNSVVRIAPD-RSTTIIAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp T----TCCEEEECTT-CCEEEEECGGG-TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred C----CCeEEEECCC-CCEEEEeeccc-ccCCceEEEEecccCCCCEEEEECCCC
Confidence 3 4559999975 55432211111 12568899998 8888888766543
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.38 E-value=2.3e-05 Score=94.05 Aligned_cols=278 Identities=10% Similarity=0.039 Sum_probs=155.5
Q ss_pred EEEEcC-CCceEEEEEcCCC-----------cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECC
Q 001367 339 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 406 (1091)
Q Consensus 339 ~v~fsp-dg~~llasg~~dg-----------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 406 (1091)
++++.| +|+ +++.|+.++ .+.+||..+++...... ....+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCCC
Confidence 567777 786 667776432 57889988876443211 0122333445678889
Q ss_pred CCCEEEEEEC-CCEEEEEEeeCCcccceeEEEeccccC-eeEEEEcCCCCceEEEEee-CC-----CcEEEEeCCCCcee
Q 001367 407 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRT 478 (1091)
Q Consensus 407 dg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~d~~~~~l~s~~-~d-----~~i~iwd~~~~~~~ 478 (1091)
+|+.+++|+. +..+.+||..+++-... ..+ +..+ -.+++..++|+ +++.|+ .+ ..+.+||..+++-.
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEEC-CCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeEC-CCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 9999999984 45899999987642211 111 1111 23456667888 777777 34 57999999877643
Q ss_pred EEecCCCcceE----EEeecccCCceEEEEEecCC---------eEEEEecCCCCceeeecCC---------CCcEEEEE
Q 001367 479 YSFEGHGAPVY----SLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRMA 536 (1091)
Q Consensus 479 ~~~~~~~~~v~----~~~~~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~---------~~~i~~~~ 536 (1091)
..-.....+.. ...+ ..++..++.++.+| .+..||..+..-....... ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 32000000000 0011 12334555555544 4677877765432221111 11223444
Q ss_pred EcC-CCCEEEEEecCCC----Cce---EEEEEecCCceeeEEE--ecccccccceEEEEEcCCCCEEEEEeCC-------
Q 001367 537 YSA-NGRRLFSCGTSKE----GES---FLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD------- 599 (1091)
Q Consensus 537 ~s~-d~~~l~~~~~~~~----~~~---~i~iwd~~~~~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~s~d------- 599 (1091)
+.. +++.+++++.... ... .+.+||..+....... .... ...-.+++..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 443 6666676664211 011 6888998877654433 1111 1223445667899999988754
Q ss_pred ----CeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEEC
Q 001367 600 ----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 642 (1091)
Q Consensus 600 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 642 (1091)
..+.+||..+.+....-.............+.++++.++.|+.
T Consensus 484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999988765442222211112334566789999999885
No 273
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.36 E-value=5.3e-05 Score=90.87 Aligned_cols=121 Identities=12% Similarity=0.181 Sum_probs=76.5
Q ss_pred EEEEcC-CCCEEEEEecCCC-------CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEE
Q 001367 534 RMAYSA-NGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI 604 (1091)
Q Consensus 534 ~~~~s~-d~~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~i 604 (1091)
..++.+ +++.++.++...+ +...+.+||..+++..........+.....++++..+++.++.|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456667 7888888765432 123689999988764332221111112334567788899888887 4568999
Q ss_pred EECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE-CC-----CeEEEEECCCCC
Q 001367 605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPESN 655 (1091)
Q Consensus 605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iwd~~~~~ 655 (1091)
||..+.+....-...... .-.+++..+++++++.|+ .+ ..+.+||..+..
T Consensus 270 yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 999887665443322221 123566677899999988 34 468888887653
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.36 E-value=0.0011 Score=72.12 Aligned_cols=249 Identities=10% Similarity=-0.017 Sum_probs=152.6
Q ss_pred CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 413 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 413 (1091)
.+..+|.+..+++ .|+++- ...|+..++........ +. ....+..++|++.+..|..
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~--~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN--RIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC--BSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCc-eeEeec--ccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEE
Confidence 3456787777755 354442 35688888765433211 22 2345889999987666665
Q ss_pred EE-CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEe
Q 001367 414 AY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492 (1091)
Q Consensus 414 ~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 492 (1091)
+. ..+.|..+++.++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 54 56789889887754221 12222344678999886664 455556678899999775443333333344567888
Q ss_pred ecccCCceEEEEEecC-CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEE
Q 001367 493 PHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 571 (1091)
+.+. ++.++++-... +.|...+++...........-.....++++|++..|+.+-. +.+.|..+|+........+
T Consensus 166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 8653 34555555555 78888887765444333333445789999998888777643 2567999998754333333
Q ss_pred ecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001367 572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 572 ~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1091)
.... .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus 242 ~~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 242 SQGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 456677773 34444444567788888876776665554
No 275
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.33 E-value=8.2e-05 Score=74.73 Aligned_cols=185 Identities=9% Similarity=0.089 Sum_probs=126.0
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCc
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 476 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 476 (1091)
.-...+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. ........++++. +.+..-.++.+.+||..+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTTE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcCc
Confidence 445778887 4666677778889999999999877654 333 2223223335555 34445568899999999999
Q ss_pred eeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC--C---cEEEEEEcCCCCEEEEEecCC
Q 001367 477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--L---GCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~---~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
.+.++.... .-..++. ++..|+.+..++.|.++|..+.+....+.... . .+..+.|. +|+ |.+...
T Consensus 128 ~~~ti~~~~-eGwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw-- 198 (268)
T 3nok_A 128 RERTTRYSG-EGWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW-- 198 (268)
T ss_dssp EEEEEECSS-CCCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET--
T ss_pred EEEEEeCCC-ceeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC--
Confidence 999987432 2244543 44566666678999999999888776554422 2 34566666 675 444432
Q ss_pred CCceEEEEEecCCceeeEEEecccc----------cccceEEEEEcCCCCEEEEEeC
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQL----------QHNSVSVVHFDTAKDQILAAGD 598 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~v~~~~~~~~l~~~s~ 598 (1091)
....|.+.|..+++.+..+..... .....+.++++|+++.|++.+.
T Consensus 199 -~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 -HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 245799999999999888775310 1246789999998887777664
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.31 E-value=0.0012 Score=71.68 Aligned_cols=248 Identities=10% Similarity=-0.034 Sum_probs=152.2
Q ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCce
Q 001367 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477 (1091)
Q Consensus 398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 477 (1091)
..+|.+..++ .+|+.+. ...|+..++.+... . .+......+..++|.+.+.. ++++-...+.|..+++..+..
T Consensus 35 ~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~-~---~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEY-T---LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp SSCEEESSSC-CEEEEEC-BSCEEEECTTSCCE-E---EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred CCcccccccC-ceeEeec-ccceEEEeCCCCee-E---EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCc
Confidence 4456666663 3444443 34477777765432 1 12223345789999987664 445555678899999876654
Q ss_pred eEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEE
Q 001367 478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557 (1091)
Q Consensus 478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 557 (1091)
...+.........+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+..... ..+.|
T Consensus 108 ~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~--~~~~I 184 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRI 184 (349)
T ss_dssp EEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECS--SSCEE
T ss_pred eEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccC--CCCEE
Confidence 4433333334566777543 44566677777899999987665544444444567899999977777665431 12678
Q ss_pred EEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCE
Q 001367 558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636 (1091)
Q Consensus 558 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 636 (1091)
...++............ ......++++|++..|+.+. ..+.|..++++.......+... ......+++ .++.+
T Consensus 185 ~r~~~dG~~~~~~~~~~---~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~l 258 (349)
T 3v64_C 185 EASSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSL 258 (349)
T ss_dssp EEEETTSCSCEESCCSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEE
T ss_pred EEEeCCCCCcEEEEECC---CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEE
Confidence 88887654332222211 24678999999887777765 5678999998764433333322 223467777 34555
Q ss_pred EEEEECCCeEEEEECCCCCeecccc
Q 001367 637 LAVIANENRIKILETPESNSVDAAG 661 (1091)
Q Consensus 637 l~~~~~dg~i~iwd~~~~~~~~~~~ 661 (1091)
.++-...+.|..++..++.....+.
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEecCCCCeEEEEEccCCCccEEec
Confidence 5555567888888866665555444
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.31 E-value=0.00034 Score=70.97 Aligned_cols=207 Identities=7% Similarity=-0.006 Sum_probs=133.5
Q ss_pred eecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC
Q 001367 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407 (1091)
Q Consensus 328 ~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 407 (1091)
+.|.|-.+++..++|+|++..|.|+...++.|...|.. |+.+.... +.+ ....-.|++.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~ 80 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGD 80 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECST
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCC
Confidence 45667767999999999887788888889999999988 77665421 222 256788899999
Q ss_pred CCEEEEEECCCEEEEEEeeCCcccceeEEEe------ccccCeeEEEEcCCCCceEEEEeeCCC--cEEEEeC-CCCcee
Q 001367 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDA-VTGSRT 478 (1091)
Q Consensus 408 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~------~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~-~~~~~~ 478 (1091)
+.++++.-.++.+.++++.....+....... ........++|.|+++. |+++.... .|..|+- ..+..+
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCC
T ss_pred CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCce
Confidence 9877776667889999987655322111221 12345689999999985 33344333 4445541 111122
Q ss_pred EEec-------CCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC---------CcEEEEEEcCCCC
Q 001367 479 YSFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGR 542 (1091)
Q Consensus 479 ~~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~d~~ 542 (1091)
..+. .+...+.+++++|. .+++++....++.+.++|.+.. ....+.... .....++|.++|+
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred eeecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 2221 12345678888875 4578888888889999987644 333332221 2567999999998
Q ss_pred EEEEEecCCCCceEEEEEec
Q 001367 543 RLFSCGTSKEGESFLVEWNE 562 (1091)
Q Consensus 543 ~l~~~~~~~~~~~~i~iwd~ 562 (1091)
..+++ . .+.++.+..
T Consensus 237 lyIvs-E----~n~~y~f~~ 251 (255)
T 3qqz_A 237 IYIVS-E----PNRFYRFTP 251 (255)
T ss_dssp EEEEE-T----TTEEEEEEC
T ss_pred EEEEc-C----CceEEEEEe
Confidence 65553 2 334665543
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.30 E-value=0.00083 Score=74.20 Aligned_cols=248 Identities=11% Similarity=-0.006 Sum_probs=153.5
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE-
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 414 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 414 (1091)
.-.|.+..+.+ +|+++ ....|+..++.++..... . .....+..++|.+.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~~-------------------~-~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------L-NNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEEE-------------------E-CSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEEE-------------------e-cCCCccEEEEEecCCCeEEEEe
Confidence 45677776754 35444 236788888876543321 2 233468899999866666555
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeec
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 494 (1091)
...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 456789999887654211 12222334577899886664 45555667789999976554333333333556788886
Q ss_pred ccCCceEEEEEecC-CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEec
Q 001367 495 AKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573 (1091)
Q Consensus 495 ~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 573 (1091)
+. ++.++++-... +.|...+++...........-.....++++|++..|+.+-. ..+.|..+|+........+..
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 54 34455555455 77888888765554444444445789999998887777643 256799999875443333332
Q ss_pred ccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 574 ~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
.. .....+++ ..+..+++-...+.|..++..+|+....+..
T Consensus 287 ~~---~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GL---PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SC---SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CC---CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 22 45667777 3344444555678888888777776666653
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.30 E-value=0.0016 Score=69.74 Aligned_cols=238 Identities=9% Similarity=-0.041 Sum_probs=143.6
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC---CceeE-EecCCC
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTY-SFEGHG 485 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~-~~~~~~ 485 (1091)
+|+.+.. ..|+..|+.+++... +.........++|.+++.. ++++-...+.|..+++.+ +.... .+...-
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe----hhcCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 3444433 348888887764322 2223456789999987664 455556678999999876 12222 232222
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ..+.|...++...
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG~ 153 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 153 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCCC
Confidence 34567777543 34566666778899999987654443343344567899999977776665431 1357888887543
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1091)
. ...+.... ......+++++++..|+.+. ..+.|..+|++...................+++. .+.++++-...+
T Consensus 154 ~-~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 154 D-IYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp C-EEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred C-eEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 3 33332211 25678999999888877765 5678999998754333333322222234577775 355555555678
Q ss_pred eEEEEECCCCCeeccc
Q 001367 645 RIKILETPESNSVDAA 660 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~ 660 (1091)
.|..++..+++....+
T Consensus 230 ~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcceEEE
Confidence 8999988766554444
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.29 E-value=0.00073 Score=74.65 Aligned_cols=257 Identities=10% Similarity=-0.046 Sum_probs=156.3
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeE
Q 001367 400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 479 (1091)
Q Consensus 400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 479 (1091)
+|.+..+ ..+|+.+. ...|+..++.++... .+......+..++|.+.+.. ++++-...+.|..+++..+....
T Consensus 80 ~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~----~~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 80 SCKALGP-EPVLLFAN-RIDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp CEEECSS-CCEEEEEC-BSCEEEECTTSCCCE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEE
T ss_pred eECCccc-cceeEeec-CccceeeccCCCcEE----EEecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEE
Confidence 3455555 33444443 345888887765422 22233445789999987664 45555667889999987665443
Q ss_pred EecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
.+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ....|+.
T Consensus 153 ~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r 229 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEA 229 (386)
T ss_dssp EECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEE
T ss_pred EEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEE
Confidence 33333334456777543 34566666777889998887655444444444567899999988777765431 1367888
Q ss_pred EecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 560 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
+++............ ......++++|++..|+.+. ..+.|..++++.......+... ......+++ ..+.+++
T Consensus 230 ~~~dG~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 230 SSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW 303 (386)
T ss_dssp EETTSCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred EeCCCCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEE
Confidence 887654333332222 24578999998877777654 5678999998754433333322 223467777 3455555
Q ss_pred EEECCCeEEEEECCCCCeecccccccccceeeee
Q 001367 639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 639 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1091)
+-...+.|..++..++.....+.........+++
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 5556788988887666655555433333333333
No 281
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.24 E-value=0.00026 Score=70.57 Aligned_cols=188 Identities=13% Similarity=0.098 Sum_probs=124.0
Q ss_pred CCccEEEEEECCCCCEEEEEECC--CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC
Q 001367 395 PGVSVNRVVWSPDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
...-...+.|++ +.+..+.+.+ ..|+.+|+.+|+.++.. .+..+ ........+++. +.+..-.++.+.++|.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~~---~fgeGi~~~~~~-ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPPP---YFGAGIVAWRDR-LIQLTWRNHEGFVYDL 92 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCTT---CCEEEEEEETTE-EEEEESSSSEEEEEET
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCCC---cceeEEEEeCCE-EEEEEeeCCEEEEEEC
Confidence 345677899986 5555665554 48999999999866533 22222 222223334554 3444566889999999
Q ss_pred CCCceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCC-----CcEEEEEEcCCCCEEEEE
Q 001367 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----LGCTRMAYSANGRRLFSC 547 (1091)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~d~~~l~~~ 547 (1091)
.+.+.+.++..... -..++. ++..|+.+..++.|.++|..+.+....+.... ..+..+.+. +|+.. +.
T Consensus 93 ~tl~~~~ti~~~~~-Gwglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly-an 165 (243)
T 3mbr_X 93 ATLTPRARFRYPGE-GWALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL-AN 165 (243)
T ss_dssp TTTEEEEEEECSSC-CCEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE-EE
T ss_pred CcCcEEEEEeCCCC-ceEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE-EE
Confidence 99999999864332 244543 34455555668899999999888776654422 234455554 56544 43
Q ss_pred ecCCCCceEEEEEecCCceeeEEEeccc----------ccccceEEEEEcCCCCEEEEEeC
Q 001367 548 GTSKEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGD 598 (1091)
Q Consensus 548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~v~~~~~~~~l~~~s~ 598 (1091)
.. ....|.+.|..+++.+..+.... ......+.++++|+++.|++.+.
T Consensus 166 vw---~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 166 VW---LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ET---TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EC---CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 32 14469999999999988877431 11246789999999888888764
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.22 E-value=0.00019 Score=87.33 Aligned_cols=246 Identities=6% Similarity=-0.044 Sum_probs=133.5
Q ss_pred CCCc-cEEEEEEC-CCCCEEEEEEC-C----CEEEEEEeeCC-cccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC-
Q 001367 394 DPGV-SVNRVVWS-PDGSLLGVAYS-K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD- 464 (1091)
Q Consensus 394 ~h~~-~V~~l~~s-pdg~~las~~~-d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d- 464 (1091)
+|.- .+...+|| |||++||.+.. + .+|+++|+.+| +.+.. .+. .....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCE--EEEEEECC
Confidence 4553 78899999 99999997643 2 35999999998 63321 111 12457899999985 4433333
Q ss_pred ----CcEEEEeCCCCcee--EEecC-CCcceEEEeecccCCceEEEEEec---CCeEEEEecCCCC-ce--eee-cCCCC
Q 001367 465 ----KTIKVWDAVTGSRT--YSFEG-HGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLG-AR--VDY-DAPGL 530 (1091)
Q Consensus 465 ----~~i~iwd~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~-~~--~~~-~~~~~ 530 (1091)
..|.++++.++... ..+.. .......+.+ ++||++|+..+. ...|.++|+.+.. .. ..+ .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 36888898876422 22222 2233445556 567777776553 3358888887753 22 222 22333
Q ss_pred cEEEEEEcCCCCEEEEEecCC-CCceEEEEEecCCc-eeeEEEecccccccceEEEEEcCCCCEE-EEEeCCCe--EEEE
Q 001367 531 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKIW 605 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~s~dg~--i~iw 605 (1091)
...++.|+ +|..|+..+... .+...|+.+++.++ +....+..+. ....+..+.+. ++.+ ++...++. |+++
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 44444443 366666555432 34667888988753 3222022222 01234555554 4455 44666775 5555
Q ss_pred EC-------CCCeeEEEEeCCCCCCCCceEEE------ccCCC-EEEEEECC---CeEEEEECCCCC
Q 001367 606 DM-------NKVQLLTTIDAGGGLPENPRICF------NKNGT-LLAVIANE---NRIKILETPESN 655 (1091)
Q Consensus 606 d~-------~~~~~~~~~~~~~~~~~v~~v~~------s~~~~-~l~~~~~d---g~i~iwd~~~~~ 655 (1091)
++ .+++....+..... ...+.+ ++++. ++++.+.. ..++.+|+.+++
T Consensus 397 dl~~~~~~~~~g~~~~~l~l~~~---~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 397 MADSQDGVFKAGTGLREVVMEEP---IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp ECCTTTSCCCTTTCCEECCCCCS---SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ecccccccccCCccceEECCCCc---eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 65 34431334433222 223344 34554 33443332 457777776553
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.20 E-value=0.0029 Score=67.65 Aligned_cols=232 Identities=9% Similarity=-0.066 Sum_probs=138.3
Q ss_pred CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE-CCCEEEEEEeeCC---cccc
Q 001367 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGG---SDAR 432 (1091)
Q Consensus 357 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~---~~~~ 432 (1091)
..|+..|+.+++.... + .....+..++|++++..|..+. ..+.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 6788899887654421 1 1335678999999776666554 5678999998762 2111
Q ss_pred eeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC-CeE
Q 001367 433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI 511 (1091)
Q Consensus 433 ~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i 511 (1091)
. .+.........+++.+.+.. +.++-...+.|.+.|+........+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222345678999876654 4555566789999997654333333323345678888543 33444444333 678
Q ss_pred EEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCC
Q 001367 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591 (1091)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 591 (1091)
...+++...........-.....+++++++..|+.+-. ....|..+|...... +.+............+++. .+.
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ 220 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDK 220 (316)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTE
T ss_pred EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCE
Confidence 88887654433333333446789999998888877643 256799999875332 3332111012345667774 344
Q ss_pred EEEEEeCCCeEEEEECCCCeeEEEEe
Q 001367 592 QILAAGDDHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 592 ~l~~~s~dg~i~iwd~~~~~~~~~~~ 617 (1091)
.+++-...+.|..++..+++.+..+.
T Consensus 221 ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 44445567788888887776655553
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.19 E-value=0.00043 Score=77.61 Aligned_cols=246 Identities=12% Similarity=0.063 Sum_probs=144.5
Q ss_pred CeeEEEecCC--CCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCC---C-eEEEEeccCc
Q 001367 803 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS 875 (1091)
Q Consensus 803 ~v~~l~~s~d--g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d---g-~i~iwd~~~~ 875 (1091)
....++++|+ +..|..+. .+.|+.+|..+++..... ........+++++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4578999985 44455554 488999999877765443 3555789999999 77754443311 1 2333443322
Q ss_pred cee-eeeccccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE
Q 001367 876 EVI-SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 953 (1091)
Q Consensus 876 ~~~-~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~ 953 (1091)
... ..+. .......++++| +|.+.++-..++.|+.++..++.... ...... . . .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~-~-~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMD-T-K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECS-C-C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccC-C-C---CCcccEEEeCCCCEEEEE
Confidence 110 1122 234456789999 77777666677889999988665311 111111 1 1 123479999999966654
Q ss_pred --ecCeEEEEEcC--Cccee--eeeec--C------------CccCEEEEEE---------eeCCCEEEEEEcCCcEEEE
Q 001367 954 --HETHLAIYEAE--ELTCL--KQWFP--I------------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 1004 (1091)
Q Consensus 954 --~d~~i~vwd~~--~~~~~--~~~~~--~------------h~~~v~~v~f---------s~dg~~l~t~~~dg~v~iw 1004 (1091)
..+.|+.++.. ++... ..+.. + .-.....+++ .++|.++++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45689998865 23211 11110 0 0124677999 6777777766667889999
Q ss_pred eCCCCceEEEeeccc-----c----cCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecC
Q 001367 1005 EASNLEVQCRILSTA-----Y----LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1005 d~~~~~~~~~~~~~~-----~----~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
+. +|.......... + ++.. ..--.|..++++|.++.++++=..++.|+.+++.
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~--~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQ--ALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTT--CBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccc--cEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 84 564432222111 0 0000 0112367788995457777766677888888774
No 285
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.19 E-value=0.0013 Score=66.64 Aligned_cols=217 Identities=12% Similarity=0.126 Sum_probs=130.7
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeecc-ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 837 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 837 ~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
.+.+-...+..++++|+++.+.++...++.|...|.. ++.+..+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4455556899999999666677778889999999998 887776632 22457889999999877776677889999987
Q ss_pred CCce-eeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEec-CeEEEEEcC---Ccceeeeee------cCCccCEEEEE
Q 001367 916 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAE---ELTCLKQWF------PISSVPISQAT 984 (1091)
Q Consensus 916 ~~~~-~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d-~~i~vwd~~---~~~~~~~~~------~~h~~~v~~v~ 984 (1091)
.... ..........+..........++|+|+++.|.++.+ ....+|.+. ....+.... ..+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6442 111122211111111235789999999977776433 333444443 111111110 11234578899
Q ss_pred EeeCC-CEEEEEEcCCcEEEEeCCCCceEEEeeccc-ccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEec
Q 001367 985 FSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1059 (1091)
Q Consensus 985 fs~dg-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~ 1059 (1091)
|.|.. ++++.......+.++|.. |+.+..+.... ..... ...-.+=-++++| +|+ |..+++-+.+++++-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~--~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLS--HNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCS--SCCCSEEEEEECT-TCC-EEEEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcc--cccCCCCeeEECC-CCC-EEEEcCCceEEEEEe
Confidence 99954 556666667789999976 44554444221 10100 0111234578999 466 444577775555543
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.00052 Score=76.99 Aligned_cols=247 Identities=12% Similarity=0.042 Sum_probs=143.4
Q ss_pred CCeeEEEecC-CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeC-CC----eEEEEeccC
Q 001367 802 EAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARS 874 (1091)
Q Consensus 802 ~~v~~l~~s~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~-dg----~i~iwd~~~ 874 (1091)
.....++++| ++..|.++. .+.|+.+|+.++...... ........++|++ ++++|+++.. ++ .+.+++. .
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-C
Confidence 3557899998 455566665 478999998876654433 3556788999999 7775555543 22 3444443 3
Q ss_pred ccee--eeeccccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEE
Q 001367 875 SEVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 951 (1091)
Q Consensus 875 ~~~~--~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la 951 (1091)
+... ..+. .......++++| +|.++++-..++.|..++..++.... ....... .....++|+|+|++|.
T Consensus 214 g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 214 SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAY 285 (430)
T ss_dssp GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEE
T ss_pred Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEE
Confidence 3322 2232 223467789999 77777776678889999998754321 1111111 1367899999999666
Q ss_pred EE--ecCeEEEEEcCC--cce--eeeeec--C------------CccCEE-EEEEe--------eCCCEEEEEEcCCcEE
Q 001367 952 LV--HETHLAIYEAEE--LTC--LKQWFP--I------------SSVPIS-QATFS--------CDCRMVFTSFVDGTLS 1002 (1091)
Q Consensus 952 ~~--~d~~i~vwd~~~--~~~--~~~~~~--~------------h~~~v~-~v~fs--------~dg~~l~t~~~dg~v~ 1002 (1091)
++ ..+.|..++... ++. +..+.. + .-.... .++.. ++|.++++-...+.|+
T Consensus 286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 54 567898887653 221 111110 0 011223 45543 3456666555667899
Q ss_pred EEeCCCCceEEEeeccc--ccC--CC--C-cccccceeEEEeCCCCCCeEEEEecCCcEEEEecC
Q 001367 1003 IHEASNLEVQCRILSTA--YLR--PT--T-SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1060 (1091)
Q Consensus 1003 iwd~~~~~~~~~~~~~~--~~~--~~--~-~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~ 1060 (1091)
.++ ..|.......... ... .+ . ...--.|..++++|+++.++++-..++.|+.+++.
T Consensus 366 ~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 888 4565443332100 000 00 0 00112577889998546666666667788888763
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.18 E-value=0.0026 Score=70.43 Aligned_cols=249 Identities=9% Similarity=-0.037 Sum_probs=152.7
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC----ceeEEecCCC
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~ 485 (1091)
+|+.+. ...|+..++.+.... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~----~~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCccee----EeccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 444443 456888888765422 22334557889999987664 4455556788999997652 2223333334
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
.....+++.+. .+.+.++-...+.|.+.+++.................+++.|.+.+|+..-.. ....|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence 45667787543 34566677778899999887665555554444567899999977777665321 1356888887654
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCC
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 644 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 644 (1091)
......... ......+++++++..|+.+. ..+.|..+|++...................+++. .+.++++-...+
T Consensus 236 ~~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 236 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred ccEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 433333322 25678999999888887765 5678999998765544444432222334566663 344555555668
Q ss_pred eEEEEECCCCCeecccccccccceeee
Q 001367 645 RIKILETPESNSVDAAGVLSDNLRKLS 671 (1091)
Q Consensus 645 ~i~iwd~~~~~~~~~~~~~~~~v~~~~ 671 (1091)
.|..++..++.....+.........++
T Consensus 312 ~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp SEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred eEEEEEcCCCCceEEEecCCCCCceEE
Confidence 898888777766555543333333333
No 288
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.14 E-value=0.04 Score=67.13 Aligned_cols=537 Identities=10% Similarity=0.044 Sum_probs=283.4
Q ss_pred CccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC
Q 001367 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 475 (1091)
Q Consensus 396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 475 (1091)
...|.++.-..+|. |-.|..+| +..||-..-+..... -......|.++.-..+|. |..++.+| +..||..+.
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~--~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTY--GENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCT--TSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTTT
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEcc--CCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCCC
Confidence 46799999888885 44556777 666663211100000 001234688888777764 55555555 789998776
Q ss_pred ceeEEecCCCcceEEEeecccCCceEEEEEecCCeEEEEecCCCCceee----ecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
+...........|.++.. .++ .|..++.+ -+..+|..+...... .......|.++....+|...+.. .
T Consensus 93 ~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~-- 164 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT-Y-- 164 (758)
T ss_dssp EECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE-T--
T ss_pred EEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe-C--
Confidence 433211112234665543 244 45555555 577788765443221 01223468888888888766643 2
Q ss_pred CCceEEEEEecCCceeeEEEeccc--ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEE
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 629 (1091)
. -+..++..+++......... .....|.++...+++..|..|+. +.+..+|..+++......... ..|.++.
T Consensus 165 --~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~--~~i~~i~ 238 (758)
T 3ott_A 165 --N-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHN--NSIKSLA 238 (758)
T ss_dssp --T-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEE--EEEEEEE
T ss_pred --C-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCC--CeEEEEE
Confidence 1 27788877765432211100 01234788888777776666664 468889988765433211111 2367777
Q ss_pred EccCCCEEEEEECCCeEEEEECCCCCeecccccccccceeeeeccccccccccccCCcccCCCCCCCCCccccccccccc
Q 001367 630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSNEDPKEDVKPEISVEAENKS 709 (1091)
Q Consensus 630 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~l~s~~~d~~i 709 (1091)
...+|.+. +|+. +-+.+++..+.... .+..... +
T Consensus 239 ~d~~g~lW-igT~-~Gl~~~~~~~~~~~-~~~~~~~------------------------------~------------- 272 (758)
T 3ott_A 239 LDGNGDLL-AGTD-NGLYVYHNDTTPLQ-HIIHDSR------------------------------N------------- 272 (758)
T ss_dssp ECTTCCEE-EEET-TEEEEECCTTSCCE-EECCCTT------------------------------C-------------
T ss_pred EcCCCCEE-EEeC-CceeEEecCCCcEE-EEEcCCC------------------------------C-------------
Confidence 77777644 4554 45777776543211 1000000 0
Q ss_pred ccccccccCCcccceeecCCccccccEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCc
Q 001367 710 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 789 (1091)
Q Consensus 710 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1091)
+.......|.++....+|..-+ ++..| +.++.... . .+.+..
T Consensus 273 ------------------~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~-~------------~~~~~~----- 314 (758)
T 3ott_A 273 ------------------IQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNS-A------------LQFIPI----- 314 (758)
T ss_dssp ------------------TTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC--------------CEEEEH-----
T ss_pred ------------------cCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCC-c------------eeEEec-----
Confidence 0000234577777777777444 43445 33322110 0 000000
Q ss_pred eeeecCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEccCce--eEEEec-------CCCCCeEEEEEcCCCCcEEEE
Q 001367 790 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK--TILTIM-------PPSPTATSLAFNPHDNNVIAI 860 (1091)
Q Consensus 790 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~--~~~~~~-------~~~~~i~~l~~s~~~~~~la~ 860 (1091)
...........|.++....+|.+.+.. .+.+..++..+++ ....+. .....|.++.-.. ++++.+
T Consensus 315 ---~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lWi- 388 (758)
T 3ott_A 315 ---SQITGTGDGNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDK-EQQLWI- 388 (758)
T ss_dssp ---HHHSCSCCCCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECT-TSCEEE-
T ss_pred ---ccCCCCCCCceEEEEEEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECC-CCCEEE-
Confidence 000000124568889888888877765 4456666655432 111221 1224588888877 565544
Q ss_pred EeCCCeEEEEeccCcceeeee--cc----ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC------ceeeeeeeecc
Q 001367 861 GMDDSTILIYNARSSEVISKL--EG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW------GIQTCRSLQTP 928 (1091)
Q Consensus 861 g~~dg~i~iwd~~~~~~~~~l--~~----h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~------~~~~~~~~~~~ 928 (1091)
|+ ++-+..|+..+++...-. .. ....|.++...++|++.+ |+..+-|.++|..+. ...........
T Consensus 389 gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (758)
T 3ott_A 389 AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVH 466 (758)
T ss_dssp EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGG
T ss_pred Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceecccccccc
Confidence 55 456999998877543211 11 234588888888876655 565555888886531 10000011111
Q ss_pred CCCcCCCCCceEEEEcCCCCEEE-EEecCeEEEEEcCCcceeeeeecC--CccCEEEEEEeeCCCEEEEEEcCCcEEEEe
Q 001367 929 DGVMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHE 1005 (1091)
Q Consensus 929 ~~~~~~~~~i~~l~fs~dg~~la-~~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd 1005 (1091)
.+... ..|.++...++|.+.+ .+..+.|..+|..+++...-.... ....+.++....+|.+.+. +..| +..++
T Consensus 467 ~~l~~--~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~ 542 (758)
T 3ott_A 467 NGLSG--MFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRIN 542 (758)
T ss_dssp GTCSC--SCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEEC
T ss_pred ccccc--ceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEe
Confidence 12111 2588999999999876 345567888998876544321111 1356888888888887664 4544 88888
Q ss_pred CCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCC
Q 001367 1006 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~ 1062 (1091)
..++.... +. ...++ ...|..+ ..+ +|. |-.++..| +..++....
T Consensus 543 ~~~~~~~~-~~-~~gl~----~~~i~~i--~~~--~g~-lWi~t~~G-l~~~~~~~~ 587 (758)
T 3ott_A 543 PKDESQQS-IS-FGSFS----NNEILSM--TCV--KNS-IWVSTTNG-LWIIDRKTM 587 (758)
T ss_dssp C--CCCCB-CC-CCC-------CCEEEE--EEE--TTE-EEEEESSC-EEEEETTTC
T ss_pred cCCCceEE-ec-ccCCC----ccceEEE--EEC--CCC-EEEECCCC-eEEEcCCCc
Confidence 77664331 11 11122 2234433 222 344 44444444 677777543
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.14 E-value=0.005 Score=66.17 Aligned_cols=281 Identities=12% Similarity=0.026 Sum_probs=146.5
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
..+.+|.|.+++. ++++|. .|.| +.....|+.=..... ........+.+++|++ +..++ +
T Consensus 36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~~-~ 95 (327)
T 2xbg_A 36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGWI-V 95 (327)
T ss_dssp SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEEE-E
T ss_pred CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEEE-E
Confidence 3799999988887 556654 4644 333333431110000 0112345788999986 44444 4
Q ss_pred ECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee-EEecCCCcceEEEee
Q 001367 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCP 493 (1091)
Q Consensus 415 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~ 493 (1091)
+..+.|.. ....|+..........+.+.+..+.+.+++. +++.+ .++.|..- ...|+.- .....+...+..+++
T Consensus 96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence 45664332 3333443332111112334577888877776 45444 45654332 1233322 222344556788877
Q ss_pred cccCCceEEEEEecCCeEEEEecCCCCcee-eecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEe
Q 001367 494 HAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1091)
Q Consensus 494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1091)
.+ ++.+++.+...+..+-+|-. +..-. ........+..+.+.++++.++.+. .+.+++.+...++....+.
T Consensus 171 ~~--~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~ 242 (327)
T 2xbg_A 171 SP--SGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELL 242 (327)
T ss_dssp CT--TSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCB
T ss_pred cC--CCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEecc
Confidence 54 55566655444434434321 11111 1123345678899999988766542 3446665433344333332
Q ss_pred cc-cccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC-CCCCCceEEEccCCCEEEEEECCCeEEEEE
Q 001367 573 GL-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANENRIKILE 650 (1091)
Q Consensus 573 ~~-~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 650 (1091)
.. ......+..+.+.+++..+++ +.+|.+ .+..+.|+.-..+.... ....+..+.|.+++. +++++.+|.|.-++
T Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 243 SPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp CTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 21 001235888999887665554 456766 45556665555444221 113568888876554 66667788877665
Q ss_pred C
Q 001367 651 T 651 (1091)
Q Consensus 651 ~ 651 (1091)
-
T Consensus 320 ~ 320 (327)
T 2xbg_A 320 T 320 (327)
T ss_dssp C
T ss_pred C
Confidence 3
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.05 E-value=0.0049 Score=68.26 Aligned_cols=206 Identities=8% Similarity=-0.001 Sum_probs=132.6
Q ss_pred CCCeeEEEecCCCCEEEEEe--CCeEEEEEccCc----eeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC
Q 001367 801 QEAVPCFALSKNDAYLFSAS--GGVISLYIVMTF----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 801 ~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~ 874 (1091)
...+..++|++.+..|..++ .+.|..+++... .....+.........+++.+.++++.++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678999999887777776 588998988752 223333334456788999874566666666778999999886
Q ss_pred cceeeeeccccCCeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEE
Q 001367 875 SEVISKLEGHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 952 (1091)
Q Consensus 875 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~ 952 (1091)
......+.........|++.|.+.+|..+.. .+.|...+++...... .+. ... .....+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~---~~l---~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT---ENI---QWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EEC---SSC---SCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEE---CCC---CceEEEEEEeCCCEEEE
Confidence 5443334334456889999997666655442 3678888887643211 111 111 14679999998888877
Q ss_pred E--ecCeEEEEEcCCcceeeeeecC--CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 953 V--HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 953 ~--~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
+ ..+.|..+|+... ....+... .......+++ ..+..+++-...+.|..++..+|+....+.
T Consensus 263 aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5 4568999998643 33333322 2344567776 334455565667889999988887665544
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.93 E-value=0.011 Score=63.06 Aligned_cols=233 Identities=8% Similarity=-0.032 Sum_probs=142.6
Q ss_pred CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCcee-EEecCCCcceEEEeecc
Q 001367 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~ 495 (1091)
...|+..++.+..... ...+. ....+..++|.+.+.. ++++-...+.|..+++..+... ..+...-.....+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENA-TIVVG-GLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCC-EEEEE-EEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEE-EEEec-CCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 4568888887753111 11122 2335678999986664 4555566788999998766422 12222223455677754
Q ss_pred cCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc
Q 001367 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1091)
. ++.+.++-...+.|.+++++.................+++.|.+..|+..... ....|...++............
T Consensus 89 ~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~~~~~~~~~- 164 (318)
T 3sov_A 89 L-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINSE- 164 (318)
T ss_dssp T-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCSCEEEECSS-
T ss_pred C-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCCeEEEEECC-
Confidence 3 44566676778899999987655444444444567899999977776665421 2456888887643322222221
Q ss_pred ccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCC
Q 001367 576 LQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654 (1091)
Q Consensus 576 ~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 654 (1091)
-.....+++++++..|+.+. ..+.|..+|++.......... .......+++.. +.++++-...+.|..++..++
T Consensus 165 --l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 165 --IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp --CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred --CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 24678999999877777764 568899999875443333321 122346677753 345555556788999998777
Q ss_pred Ceecccc
Q 001367 655 NSVDAAG 661 (1091)
Q Consensus 655 ~~~~~~~ 661 (1091)
+....+.
T Consensus 240 ~~~~~i~ 246 (318)
T 3sov_A 240 EGLREIH 246 (318)
T ss_dssp CSCEEEE
T ss_pred CceEEEe
Confidence 6554443
No 292
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.93 E-value=0.0054 Score=68.64 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=96.1
Q ss_pred CcEEEEEcC-CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE
Q 001367 336 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 414 (1091)
Q Consensus 336 ~V~~v~fsp-dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 414 (1091)
....++++| ++..|.++-.. +.|..+|..++.... +.........++|+++|++|.++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyva 196 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMIIT 196 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEEE
Confidence 678999998 34445454433 889999988765432 22244678899999999966666
Q ss_pred ECC----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcC-CCCceEEEEeeCCCcEEEEeCCCCceeEEec-CCCcce
Q 001367 415 YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPV 488 (1091)
Q Consensus 415 ~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v 488 (1091)
... ....+|-...+.... ...+. .......++++| +|. ++++-..++.|..++..++....... +.....
T Consensus 197 d~~~~~~~~~v~~~~~~g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P 272 (430)
T 3tc9_A 197 NDQNNNDRPNNYILTRESGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWE 272 (430)
T ss_dssp ECCSCTTSEEEEEEEGGGTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSSCC
T ss_pred eCCCCcccceEEEEeCCCceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCCcc
Confidence 542 222333333333221 11222 123467889999 565 56666677899999988765422221 122345
Q ss_pred EEEeecccCCce-EEEEEecCCeEEEEecCC
Q 001367 489 YSLCPHAKENIH-FIFSISVDGKIKAWLYDS 518 (1091)
Q Consensus 489 ~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~ 518 (1091)
..+++++ ++. ++++-...+.|..++.+.
T Consensus 273 ~gia~~p--dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 273 FHIQFHP--SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred eeEEEcC--CCCEEEEEECCCCEEEEEeCCc
Confidence 6788854 556 555666778899988764
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.90 E-value=0.013 Score=62.46 Aligned_cols=234 Identities=11% Similarity=-0.012 Sum_probs=140.5
Q ss_pred CCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEE-ECCCEEEEEEeeCCccccee
Q 001367 356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQ 434 (1091)
Q Consensus 356 dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~~~~ 434 (1091)
...|+..++.+........ +. ....+.+++|.+.+..|..+ ...+.|..+++.++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~-----------------~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV-----------------VG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE-----------------EE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEEEE-----------------ec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 3678999987764221100 11 12356789999965555554 4567899999877632221
Q ss_pred EEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEe-cCCeEEE
Q 001367 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKA 513 (1091)
Q Consensus 435 ~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~i 513 (1091)
.+.........+++.+.+.. ++++-...+.|.++++........+.........+++.+. .+.++++-. ..+.|..
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~-~g~ly~td~~~~~~I~r 149 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIER 149 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG-GTEEEEEECSSSCEEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCCEEEE
Confidence 12222345678899876554 4555566789999997654333333334445678888654 233444432 3577888
Q ss_pred EecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEE
Q 001367 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI 593 (1091)
Q Consensus 514 wd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 593 (1091)
.+++...........-.....+++++++..|+.+-. ....|..+|+..........+.. .....+++.. +..+
T Consensus 150 ~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~ly 222 (318)
T 3sov_A 150 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DILY 222 (318)
T ss_dssp EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEEE
T ss_pred EEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEEE
Confidence 887654443333333445689999998888877643 35679999986543322232222 4556677643 3344
Q ss_pred EEEeCCCeEEEEECCCCeeEEEEeC
Q 001367 594 LAAGDDHVIKIWDMNKVQLLTTIDA 618 (1091)
Q Consensus 594 ~~~s~dg~i~iwd~~~~~~~~~~~~ 618 (1091)
++-...+.|..++..+|+....+..
T Consensus 223 wtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEecCCCeEEEEECCCCCceEEEeC
Confidence 4455678899999887776666543
No 294
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.87 E-value=0.0037 Score=69.94 Aligned_cols=238 Identities=15% Similarity=0.097 Sum_probs=135.4
Q ss_pred CcEEEEEcCC---CceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEE
Q 001367 336 SPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 412 (1091)
Q Consensus 336 ~V~~v~fspd---g~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 412 (1091)
....++|+|+ |. |.++-.. +.|+.+|..+++... +.+.......++|+++|++++
T Consensus 140 ~P~gvavd~~s~~g~-Lyv~D~~-~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDD-LYWVGQR-DAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp CCCEEEECTTTTTCE-EEEECBT-SCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred CCceEEEccccCCCE-EEEEeCC-CCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence 5789999995 65 5444333 889999988776543 222445689999999999444
Q ss_pred EEECC---C-EEEEEEeeCCcccceeEEEeccccCeeEEEEcC-CCCceEEEEeeCCCcEEEEeCCCCceeEEe-c-CCC
Q 001367 413 VAYSK---H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF-E-GHG 485 (1091)
Q Consensus 413 s~~~d---~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~ 485 (1091)
+.... . .+...+...+. .. ...+. .......+++.| +|. +.++-..++.|+.+|..++.....+ . +..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~-~~-~~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGF-TE-RLSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTT-CC-EEEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCe-ec-ccccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 44321 2 23333333221 11 11122 233456789999 665 5556666788999998877663322 1 112
Q ss_pred cceEEEeecccCCce-EEEEEecCCeEEEEecCCCCce----eeecCC---------------CCcEEEEEE--------
Q 001367 486 APVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGAR----VDYDAP---------------GLGCTRMAY-------- 537 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~----~~~~~~---------------~~~i~~~~~-------- 537 (1091)
..-..+++++ ++. +.++-...+.|+.++++..... ..+... -.....+++
T Consensus 273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~ 350 (433)
T 4hw6_A 273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG 350 (433)
T ss_dssp SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence 2234578754 555 5556666788999887632111 111110 113556888
Q ss_pred -cCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccc---------------cccceEEEEEc-CCCCEEEEEeCCC
Q 001367 538 -SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------QHNSVSVVHFD-TAKDQILAAGDDH 600 (1091)
Q Consensus 538 -s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------~~~~v~~v~~~-~~~~~l~~~s~dg 600 (1091)
.++|...++-. +...|+.++. +|.. ..+.+... .-.....++++ +++..+++=..++
T Consensus 351 dd~~g~lyvaD~----~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 424 (433)
T 4hw6_A 351 EEDEYDFYFCDR----DSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH 424 (433)
T ss_dssp SSCCEEEEEEET----TTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred cCCCCcEEEEEC----CCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence 66666555543 2567888885 4543 33332210 11346778888 4554444444566
Q ss_pred eEEEEECC
Q 001367 601 VIKIWDMN 608 (1091)
Q Consensus 601 ~i~iwd~~ 608 (1091)
.|+.++++
T Consensus 425 rIr~i~~e 432 (433)
T 4hw6_A 425 RVRKIAPE 432 (433)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecC
Confidence 77777653
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.86 E-value=0.013 Score=70.28 Aligned_cols=238 Identities=10% Similarity=-0.030 Sum_probs=146.2
Q ss_pred EEEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCC----ceeEEecCCC
Q 001367 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 485 (1091)
Q Consensus 410 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~ 485 (1091)
+|+.+. ...|+..++...... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred cccccc-ccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 444443 345777777654322 23334556789999986664 4555556788999997753 2233333334
Q ss_pred cceEEEeecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCc
Q 001367 486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 565 (1091)
.....|++.+. .+.+.++-...+.|.+.+++.......+.........|++.|.+.+|+..-.. ....|...++...
T Consensus 471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 45667777543 33566777778899999988665544444444567899999987777665421 1256888888755
Q ss_pred eeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEE-CC
Q 001367 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE 643 (1091)
Q Consensus 566 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d 643 (1091)
.....+... ......|++.+.+..|+.+. ..+.|...++........+...........|++. +.+|+.+. ..
T Consensus 548 ~~~~lv~~~---l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~ 622 (791)
T 3m0c_C 548 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 622 (791)
T ss_dssp CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred ceEEEEeCC---CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCC
Confidence 443333322 25788999998888887765 5678999998766555554433332233455553 33454444 56
Q ss_pred CeEEEEECCCCCeecccc
Q 001367 644 NRIKILETPESNSVDAAG 661 (1091)
Q Consensus 644 g~i~iwd~~~~~~~~~~~ 661 (1091)
+.|...+..++..+..+.
T Consensus 623 ~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TEEEEEETTTCCCCEEEE
T ss_pred CEEEEEeCCCCcceEEee
Confidence 788888877775554443
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.84 E-value=0.0073 Score=67.50 Aligned_cols=251 Identities=10% Similarity=0.048 Sum_probs=143.6
Q ss_pred CeeEEEecC-CCCEEEEEe-C-CeEEEEEccCceeEEEecCC---CCCeEEEEE-------cCCCCcEEEEEeCCC----
Q 001367 803 AVPCFALSK-NDAYLFSAS-G-GVISLYIVMTFKTILTIMPP---SPTATSLAF-------NPHDNNVIAIGMDDS---- 865 (1091)
Q Consensus 803 ~v~~l~~s~-dg~~la~~~-d-g~i~iwd~~~~~~~~~~~~~---~~~i~~l~~-------s~~~~~~la~g~~dg---- 865 (1091)
....|+|+| ++..|.++. . +.|++.|++++......... ......++| ++ +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 567899998 455555554 3 57999998887766554432 235889999 99 677555555443
Q ss_pred ---eEEEEeccC-ccee-----eeeccccCCeEEEEECC-CCCEEEEEeCCCcEEEEEcC-------CCce------e--
Q 001367 866 ---TILIYNARS-SEVI-----SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVD-------GWGI------Q-- 920 (1091)
Q Consensus 866 ---~i~iwd~~~-~~~~-----~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~i~vwd~~-------~~~~------~-- 920 (1091)
.|.+++... ++.. ..+... .....++++| ++.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 366665443 2321 122211 2345788999 45556666678889999998 5443 0
Q ss_pred --eeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcC--Cccee--eeeec-----CC---------cc
Q 001367 921 --TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTCL--KQWFP-----IS---------SV 978 (1091)
Q Consensus 921 --~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~--~~~~~--~~~~~-----~h---------~~ 978 (1091)
.........+ .....++|+|+|++|.++ ....|+.++.. ++... ..+.. +. -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0112222111 245799999999965554 55688886543 33210 11111 00 11
Q ss_pred CEE-EEEEe-------eCCCEEEEEEcCCcEEEEeCCCCceEEEeecccc--------c-C--CC--Ccc-cccceeEEE
Q 001367 979 PIS-QATFS-------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY--------L-R--PT--TSC-LHVYPHAIA 1036 (1091)
Q Consensus 979 ~v~-~v~fs-------~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~--------~-~--~~--~~~-~~v~~~~~~ 1036 (1091)
... .++.. ++|.++++=....+|+.++ .+|... .+..... . . .+ ... .--.|..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 234 34444 4566666666778899998 566433 3331110 0 0 00 000 112467788
Q ss_pred eCCCCCCeEEEEecCCcEEEEecCCC
Q 001367 1037 AHPLKPTQFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 1037 ~~p~d~~~l~~g~~dg~v~~w~~~~~ 1062 (1091)
++++++.++++=..++.|+.+++...
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCC
Confidence 88843566666666778999998553
No 297
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.82 E-value=0.0081 Score=63.14 Aligned_cols=197 Identities=12% Similarity=0.156 Sum_probs=124.2
Q ss_pred CCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEcCC---CCc---EEEEEe-C--CCeEEEEecc--Ccceeee
Q 001367 813 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGM-D--DSTILIYNAR--SSEVISK 880 (1091)
Q Consensus 813 g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---~~~---~la~g~-~--dg~i~iwd~~--~~~~~~~ 880 (1091)
..+++... .+.+.+||+ +|+.++.+.. +.+..+..-|. +++ ++++.. . +++|.+|++. +++ +..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 34444333 688999999 8998888853 56666666551 122 233333 3 5799999773 433 333
Q ss_pred ecc------cc-CCeEEEEE--CCC-CC-EEEEEeCCCcEEEEEcCC---CceeeeeeeeccCCCcCCCCCceEEEEcCC
Q 001367 881 LEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHKD 946 (1091)
Q Consensus 881 l~~------h~-~~V~~l~~--spd-g~-~las~s~Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~fs~d 946 (1091)
+.. .. ..+..+++ +|. ++ +++....+|.+..|++.. +... .+.++.+.-. ..+..+...+.
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~-~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS-GKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE-EEEEEEEECS----SCEEEEEEETT
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc-ceEEEEecCC----CCcceEEEcCC
Confidence 311 11 56777888 774 44 677788899999999943 3222 2333333222 24778999998
Q ss_pred CCEEEEEec-CeEEEEEcC-----CcceeeeeecCC-ccCEEEEEE--eeCCC-EEEEEE-cCCcEEEEeCC-CCceEEE
Q 001367 947 QTRFLLVHE-THLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQCR 1014 (1091)
Q Consensus 947 g~~la~~~d-~~i~vwd~~-----~~~~~~~~~~~h-~~~v~~v~f--s~dg~-~l~t~~-~dg~v~iwd~~-~~~~~~~ 1014 (1091)
...|.++.+ ..|..|+.+ +++.+..+-.++ ...+..|++ .++|+ +|++++ .+.++.+||.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 888888654 456666754 344554432333 346888887 45666 666666 56799999997 7788877
Q ss_pred eecc
Q 001367 1015 ILST 1018 (1091)
Q Consensus 1015 ~~~~ 1018 (1091)
|...
T Consensus 271 f~Ig 274 (355)
T 3amr_A 271 FRIT 274 (355)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7633
No 298
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.78 E-value=0.037 Score=56.77 Aligned_cols=235 Identities=11% Similarity=0.079 Sum_probs=144.1
Q ss_pred EEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCE
Q 001367 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1091)
Q Consensus 340 v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1091)
.-.+|..+ ++|.-. ..++.|+|+++.+.+.... ....|..=.|-.+..+-++. +..
T Consensus 72 AIMnP~~~-ViALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~~~L~lVT--~ta 127 (365)
T 2xzh_A 72 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLNTVALVT--DNA 127 (365)
T ss_dssp EEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCEEEEEECSSSEEEEEE--SSE
T ss_pred eeeCCCcc-EEEEec-CCeEEEechHHhhhhccee--------------------cCCccEEEEecCCCeEEEEc--CCc
Confidence 34478877 556544 5889999999998887533 23577777787655443333 456
Q ss_pred EEEEEeeCCcccceeEEEeccc----cCeeEEEEcCCCCceEEEEee------CCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 420 VQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 420 i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
|+-|++.+..... +.+..|. ..|..-..+++.+++ +++|- -.|.+.+|..+. +.-+.+.||.+.-.
T Consensus 128 VyHWs~~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~ 203 (365)
T 2xzh_A 128 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFA 203 (365)
T ss_dssp EEEEESSTTCCCE--EEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEE
T ss_pred EEEEcccCCCCCc--eeeecchhcccceEEEEEECCCCCEE-EEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeE
Confidence 9999998644332 2344443 357777778898963 33332 246788999654 45677888887766
Q ss_pred EEeecccCCce-EEEEEec---CCeEEEEecCCC---Ccee-----eec-C---CCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 490 SLCPHAKENIH-FIFSISV---DGKIKAWLYDSL---GARV-----DYD-A---PGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 490 ~~~~~~~~~~~-~l~s~~~---dg~i~iwd~~~~---~~~~-----~~~-~---~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
.+.+...+... +++.+.. .+.+++-++... .... .+. . ..+-..++..|+.-..+...+.
T Consensus 204 ~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK---- 279 (365)
T 2xzh_A 204 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 279 (365)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC----
Confidence 66554333323 3333333 268899888553 1111 111 1 1223456777777777777664
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
-|.+++||+.++.++..-+-.. ..|...+...+..-+++....|.|.--.++.
T Consensus 280 ~G~ihlyDleTgt~i~~nrIS~---d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 280 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp TSEEEEEETTTCCEEEEEECCS---SCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred CcEEEEEEcccCcEEEEeccCC---CceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 6789999999999887665544 5565555544545555555666555444443
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.73 E-value=0.024 Score=68.11 Aligned_cols=215 Identities=10% Similarity=-0.044 Sum_probs=130.0
Q ss_pred CCccEEEEEECCCCCEEEEE-ECCCEEEEEEeeCCccc-ceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeC
Q 001367 395 PGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 472 (1091)
Q Consensus 395 h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 472 (1091)
....+..|+|.+.+..|..+ ...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeC
Confidence 34567899999966555554 45678888888753210 111123334456778999988765 4556666789999997
Q ss_pred CCCceeEEecCCCcceEEEeecccCCceEEEEEecC-CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001367 473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551 (1091)
Q Consensus 473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 551 (1091)
........+.........|++.+. .+.++++-... +.|...+++...........-.....|++++.+..|+.+-.
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~-- 577 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 577 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCCeEEEEEeCCCCCcceEEEecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC--
Confidence 755433333334445778888654 23444444333 67888888765554455444457889999988888777643
Q ss_pred CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEe
Q 001367 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTID 617 (1091)
Q Consensus 552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~ 617 (1091)
+...|...++............. .......|++. +.+|+.+. ..+.|...|..+|+.+..+.
T Consensus 578 -~~~~I~~~d~dG~~~~~v~~~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 -KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp -TTTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred -CCCcEEEEecCCCceEEEecCCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 25579999986554444433211 11234455553 34555544 56778888877776655553
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.68 E-value=0.0095 Score=62.63 Aligned_cols=193 Identities=12% Similarity=0.136 Sum_probs=119.9
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeeccc--CCce---E-EEEEec--CCeEEEEecCCCC-ceeeecC
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK--ENIH---F-IFSISV--DGKIKAWLYDSLG-ARVDYDA 527 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~---~-l~s~~~--dg~i~iwd~~~~~-~~~~~~~ 527 (1091)
+++.....+-+.+||+ +|+.++.+.. +.++.+.+.+. -+++ + +++.-. +++|.+|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666666788999998 8999988864 45666554331 0111 2 233333 5789999875322 2333311
Q ss_pred ------CC-CcEEEEEE--cCC-CC-EEEEEecCCCCceEEEEEec-------CCceeeEEEecccccccceEEEEEcCC
Q 001367 528 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA 589 (1091)
Q Consensus 528 ------~~-~~i~~~~~--s~d-~~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~v~~~~~ 589 (1091)
.. ..+..+|+ +|. ++ ++++... ++.+..|++ .+.+.++.+... ..+..|...+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 11 45667777 774 44 3444432 456888877 234666777653 46788889999
Q ss_pred CCEEEEEeCCCeEEEEECC-----CCeeEEEEeCCCCCCCCceEEE--ccCCC-EEEEEE-CCCeEEEEECC-CCCeecc
Q 001367 590 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVDA 659 (1091)
Q Consensus 590 ~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~ 659 (1091)
..+|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++.+ .++++.+|+.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 9999999999887777755 3455555543322235677777 45555 666666 57799999986 4444433
Q ss_pred c
Q 001367 660 A 660 (1091)
Q Consensus 660 ~ 660 (1091)
+
T Consensus 271 f 271 (355)
T 3amr_A 271 F 271 (355)
T ss_dssp E
T ss_pred E
Confidence 3
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.66 E-value=0.025 Score=63.21 Aligned_cols=252 Identities=13% Similarity=0.097 Sum_probs=140.5
Q ss_pred CcEEEEEcC-CCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE-------CCC
Q 001367 336 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-------SPD 407 (1091)
Q Consensus 336 ~V~~v~fsp-dg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-------spd 407 (1091)
....|+|+| ++..|+++-...+.|++.|..++........ -.+.-.....++| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~----------------~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI----------------NTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC----------------TTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc----------------CccccCCCcEEEEeecccccCCC
Confidence 467899999 4545666665557788899887765532000 0112246899999 999
Q ss_pred CCEEEEEECCC-------EEEEEEeeC-Ccccc-e-eEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCC----
Q 001367 408 GSLLGVAYSKH-------IVQLYAYHG-GSDAR-Q-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---- 473 (1091)
Q Consensus 408 g~~las~~~d~-------~i~iwd~~~-~~~~~-~-~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---- 473 (1091)
|++|.++...+ .|.+.+... |.... . ...+... .....++++|++.. ++++-..++.|..+|+.
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99776665443 355665444 22210 0 0112211 23457889996654 56666678889999987
Q ss_pred ---CCce-----------eEE-ec-CCCcceEEEeecccCCce-EEEEEecCCeEEEEecCCCCce----eeecCC---C
Q 001367 474 ---TGSR-----------TYS-FE-GHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGAR----VDYDAP---G 529 (1091)
Q Consensus 474 ---~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~----~~~~~~---~ 529 (1091)
++.. ... +. +.......+++++ ++. +.++-+..+.|+.++.+..... ..+... .
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 5553 112 11 2233457788854 556 4555567788998776543211 111110 0
Q ss_pred ------------CcEE-EEEEc-------CCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccc-------------
Q 001367 530 ------------LGCT-RMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL------------- 576 (1091)
Q Consensus 530 ------------~~i~-~~~~s-------~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~------------- 576 (1091)
.... .++.. +++...++-. +...|+.++ .+|. +.++.+...
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~----~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDR----LNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEG----GGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEEC----CCCEEEEEe-CCCC-EEEEecccccccccCccccccC
Confidence 1123 44454 3455444433 266788888 4553 444443210
Q ss_pred --------cccceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeE
Q 001367 577 --------QHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLL 613 (1091)
Q Consensus 577 --------~~~~v~~v~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~ 613 (1091)
.-.....|++.++ +..+++=..+..|+.++++.....
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 1134667888886 544444456677888777654443
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.62 E-value=0.0004 Score=83.07 Aligned_cols=234 Identities=9% Similarity=-0.017 Sum_probs=133.8
Q ss_pred CCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC----CceeEEecCCCcceEEEe
Q 001367 417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSLC 492 (1091)
Q Consensus 417 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~ 492 (1091)
.+.|+..++.+.+... +......+..++|.+.+.. ++++-...+.|+.+++.+ ......+.........++
T Consensus 385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 3467777776654322 1122345678999987763 344444567899999875 222222211122344566
Q ss_pred ecccCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEe
Q 001367 493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572 (1091)
Q Consensus 493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 572 (1091)
+.+. .+.++++-...+.|.+.+++.......+.........++++|.+.+|+..... ..+.|..+++..... ..+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~~-~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDI-YSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCCC-CEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCCe-eEEE
Confidence 6433 33455565667889999887654444333333455778999977666654321 125688887754332 2221
Q ss_pred cccccccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEEC
Q 001367 573 GLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 651 (1091)
Q Consensus 573 ~~~~~~~~v~~v~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 651 (1091)
... ......|+++|++..|+.+. ..+.|..+++........+...........+++..+ .++++....+.|..++.
T Consensus 536 ~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 536 TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred eCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 111 24567899999877666654 667899999875443333322222223455666554 44455556788999998
Q ss_pred CCCCeeccccc
Q 001367 652 PESNSVDAAGV 662 (1091)
Q Consensus 652 ~~~~~~~~~~~ 662 (1091)
.+++.+..+..
T Consensus 613 ~~G~~~~~i~~ 623 (699)
T 1n7d_A 613 LTGSDVNLLAE 623 (699)
T ss_dssp TTEEEEECCCT
T ss_pred cCCCceEEeec
Confidence 77766655543
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.56 E-value=0.012 Score=61.24 Aligned_cols=203 Identities=12% Similarity=0.083 Sum_probs=124.0
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEEccCceeEEE-ecC----CC--CCeEEEEE---cCCCCcEEEEEeC------
Q 001367 802 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGMD------ 863 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~~~~~la~g~~------ 863 (1091)
.-..++.|.+....+..++ .++|..|+...+..... +.. .. ..+..+.+ .| +++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 3445788887666666666 79999999986644333 221 11 14578999 68 6888876442
Q ss_pred -------CCeEEEEecc---Ccceeeeec--ccc-----------CCeEEEEECCCCCEEEEEeCC-CcEEEEEcCCCce
Q 001367 864 -------DSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWGI 919 (1091)
Q Consensus 864 -------dg~i~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~spdg~~las~s~D-g~i~vwd~~~~~~ 919 (1091)
+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence 6789999999 777654332 211 247899999999999998887 7766666554321
Q ss_pred eeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecCeEEEEEcCCcce--eeeeecCC---ccCEEEE-EEeeCCCE-
Q 001367 920 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCRM- 991 (1091)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~~i~vwd~~~~~~--~~~~~~~h---~~~v~~v-~fs~dg~~- 991 (1091)
. ...+....... ......+++.|||+.|++. ..+.+..+|+.+... +..-..+. -.....+ .--.+|+.
T Consensus 172 ~-~~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 172 S-TFAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp E-EEEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred e-eeeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 1 11111111111 1247799999999988883 478899999885333 21100021 1223443 33457877
Q ss_pred EEEEEcCCcEEEEeCCC
Q 001367 992 VFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 992 l~t~~~dg~v~iwd~~~ 1008 (1091)
|++....+.+.+.+.+.
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 45555566555555444
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.54 E-value=0.11 Score=53.48 Aligned_cols=232 Identities=13% Similarity=0.124 Sum_probs=151.5
Q ss_pred eEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc-ceeeeecc
Q 001367 805 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEG 883 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~-~~~~~l~~ 883 (1091)
.+.-.+|..+.+|.-....+++||+++.+.++.+.-. ..|.--.|-. .+.|+..+ +..|+-|++... .+...+.-
T Consensus 70 dsAIMnP~~~ViALrag~~LQiFnletK~klks~~~~-e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 70 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECS-SCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEEC
T ss_pred ceeeeCCCccEEEEecCCeEEEechHHhhhhcceecC-CccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeeec
Confidence 3556789999999888899999999999988887743 4666666764 34666555 558999999753 45555554
Q ss_pred cc----CCeEEEEECCCCCEEEEEeC-------CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCC----
Q 001367 884 HS----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT---- 948 (1091)
Q Consensus 884 h~----~~V~~l~~spdg~~las~s~-------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~---- 948 (1091)
|. ..|..-..+++.++++..|- .|.+.+|..+.+ .-+..+||.. .-..+-.+|.
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~------~sQ~ieGhaa-----~F~~~~~~g~~~~~ 214 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA-----SFAQFKMEGNAEES 214 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT------EEEEECCSEE-----EEEEECCTTCSSCE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc------ccceeeeeee-----eeEEEecCCCCCCc
Confidence 43 46777788999999875542 367889999874 3455667643 1123333332
Q ss_pred -EEEEEe----cCeEEEEEcCCc---ce------eeeeecC--CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceE
Q 001367 949 -RFLLVH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1012 (1091)
Q Consensus 949 -~la~~~----d~~i~vwd~~~~---~~------~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~ 1012 (1091)
.++-+. .++++|-++... .. +..++++ -..-.-++..|+.-..+...+.-|.+.+||+++|.++
T Consensus 215 ~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 215 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 233232 258999998543 11 1111221 1445567888887778888889999999999999998
Q ss_pred EEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCC
Q 001367 1013 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~ 1062 (1091)
..-+ .+...|... +.+.. ..=+++....|.|.--.+.+.
T Consensus 295 ~~nr--------IS~d~iF~t--a~~~~-~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 295 YMNR--------ISGETIFVT--APHEA-TAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEE--------CCSSCEEEE--EEEGG-GTEEEEEETTCEEEEEEECTT
T ss_pred EEec--------cCCCceEEe--cccCC-CCcEEEEcCCCEEEEEEECcc
Confidence 7655 122334422 22221 344666668898887777554
No 305
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.51 E-value=0.038 Score=59.77 Aligned_cols=230 Identities=12% Similarity=0.062 Sum_probs=125.6
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEEccCce-eEEEec---CCCCCeEEEEEcCC---CCcEEEEEeC---C----CeE
Q 001367 802 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STI 867 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---~~~~la~g~~---d----g~i 867 (1091)
.....+++.|||+++++-.+|.|++++ .+++ .+..+. ........++++|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 356789999999977777689999997 4454 222221 12346889999993 3555444332 3 577
Q ss_pred EEEeccCc-------cee-eeecc-ccCCeEEEEECCCCCEEEEEeCC-------------CcEEEEEcCCCcee-----
Q 001367 868 LIYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ----- 920 (1091)
Q Consensus 868 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~spdg~~las~s~D-------------g~i~vwd~~~~~~~----- 920 (1091)
..|+...+ +.+ ..+.. .......|+|.|||.+.++.+.. |.|.-.+.+.. ..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence 78877654 111 11221 11124679999999988775432 33444444321 00
Q ss_pred -eeeeeeccCCCcCCCCCceEEEEcC-CCCEEEEE--ecC--eEEEEEcCCcc------------------eeeeeecCC
Q 001367 921 -TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HET--HLAIYEAEELT------------------CLKQWFPIS 976 (1091)
Q Consensus 921 -~~~~~~~~~~~~~~~~~i~~l~fs~-dg~~la~~--~d~--~i~vwd~~~~~------------------~~~~~~~~h 976 (1091)
....+. .++. ....++|+| +|++.++- .+. .|.+.. .+. .+..+-..
T Consensus 187 ~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~- 257 (354)
T 3a9g_A 187 PNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSE- 257 (354)
T ss_dssp TTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC-
T ss_pred CCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCC-
Confidence 000111 1221 256899999 67777762 222 344432 222 11111011
Q ss_pred ccCEEEEEEe-------eCCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEe
Q 001367 977 SVPISQATFS-------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1049 (1091)
Q Consensus 977 ~~~v~~v~fs-------~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~ 1049 (1091)
......++|. .+|.++++....+.|...++.......... ..+... .-.+..+++.| ||.++++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~--~~~~~~----~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS--TFFKNV----FGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE--EECTTT----SCCEEEEEECT-TSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee--eeccCC----CCCeeEEEECC-CCcEEEEEe
Confidence 3457788883 577777766666788888887532221111 111111 12456788899 477666654
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.49 E-value=0.00055 Score=81.86 Aligned_cols=205 Identities=10% Similarity=0.007 Sum_probs=123.5
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEEccC----ceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc
Q 001367 802 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 875 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~ 875 (1091)
..+..++|++.+..|..+. .+.|+.+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789998888887775 57899999875 22222222222345678888645666665566789999998755
Q ss_pred ceeeeeccccCCeEEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE
Q 001367 876 EVISKLEGHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 953 (1091)
Q Consensus 876 ~~~~~l~~h~~~V~~l~~spdg~~las~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~ 953 (1091)
.....+.........|++.|++.+|..+.. .+.|.+.++...... .+. .... .....|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~---~l~--~~~l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLV--TENI---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC---EES--CSSC---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee---EEE--eCCC---CCccEEEEeccCCEEEEE
Confidence 433333323345678999997655544432 267888777653211 111 1111 135689999987766654
Q ss_pred --ecCeEEEEEcCCcceeeeeecC--CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEee
Q 001367 954 --HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1016 (1091)
Q Consensus 954 --~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~ 1016 (1091)
..+.|.++++... ....+... .......|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4568999998643 23332221 1223345565443 444555566889999998888776654
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.47 E-value=0.13 Score=55.13 Aligned_cols=235 Identities=12% Similarity=0.090 Sum_probs=143.6
Q ss_pred EEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCE
Q 001367 340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 419 (1091)
Q Consensus 340 v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 419 (1091)
.-.+|..+ ++|.-. ..++.|+|+++...+....+ ...|..=.|-.+. .|+-.+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~ta 126 (494)
T 1bpo_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA 126 (494)
T ss_dssp EEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SSE
T ss_pred eeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CCe
Confidence 44577776 455443 58899999999988875332 2456666666444 444443 556
Q ss_pred EEEEEeeCCcccceeEEEeccc----cCeeEEEEcCCCCceEEEEee------CCCcEEEEeCCCCceeEEecCCCcceE
Q 001367 420 VQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVY 489 (1091)
Q Consensus 420 i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~v~ 489 (1091)
|+-|++.+..... ..+..|. ..|..-..+++.+++ +++|- -.|.+.+|..+.+ .-+.+.||.+.-.
T Consensus 127 VyHWsi~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 127 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 202 (494)
T ss_dssp EEEEESSSSCCCE--EEEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEE
T ss_pred eEEecccCCCCch--hheecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeecccc-ccchheeeeeeeE
Confidence 9999997644332 2344443 357777778999963 33332 2467889996644 4577888887776
Q ss_pred EEeecccCCce-EEEEEecC---CeEEEEecCCC---Cce-----eeec----CCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001367 490 SLCPHAKENIH-FIFSISVD---GKIKAWLYDSL---GAR-----VDYD----APGLGCTRMAYSANGRRLFSCGTSKEG 553 (1091)
Q Consensus 490 ~~~~~~~~~~~-~l~s~~~d---g~i~iwd~~~~---~~~-----~~~~----~~~~~i~~~~~s~d~~~l~~~~~~~~~ 553 (1091)
.+.+....... ++..+... +.+++-++... ... ..+. ....-..++..|+.-..+...+.
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---- 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence 66654333222 33333332 78999988653 111 1111 11223457778887777777764
Q ss_pred ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001367 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
-|.+++||+.++.++..-+-.. ..|...+......-+++....|.|.--.++.
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred CceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 7789999999999887665444 5565555555555555555666555444443
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.44 E-value=0.032 Score=60.45 Aligned_cols=230 Identities=12% Similarity=0.091 Sum_probs=120.6
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEEccCcee--EEEec---CCCCCeEEEEEcCC---CCcEEEEEeCC-----CeEE
Q 001367 802 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPH---DNNVIAIGMDD-----STIL 868 (1091)
Q Consensus 802 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~s~~---~~~~la~g~~d-----g~i~ 868 (1091)
.....++|.|||+++++-..|.|.+++ +++. +..+. ........++|+|+ ++.+.++-... +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 356799999999977776689999998 3432 22221 12356889999993 24444444332 6788
Q ss_pred EEeccCcc-----e-eeeec---cccCCeEEEEECCCCCEEEEEeCC-------------CcEEEEEcCCCcee------
Q 001367 869 IYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------ 920 (1091)
Q Consensus 869 iwd~~~~~-----~-~~~l~---~h~~~V~~l~~spdg~~las~s~D-------------g~i~vwd~~~~~~~------ 920 (1091)
.|+...+. . +..+. +.......++|.|||.+.++.+.. |.|.-++.+. ...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 88877431 1 12233 111123689999999877765432 3444444432 100
Q ss_pred -----eeeeeeccCCCcCCCCCceEEEEcC-CCCEEEEE-ecCeE------EEEEcCCcc------------------ee
Q 001367 921 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV-HETHL------AIYEAEELT------------------CL 969 (1091)
Q Consensus 921 -----~~~~~~~~~~~~~~~~~i~~l~fs~-dg~~la~~-~d~~i------~vwd~~~~~------------------~~ 969 (1091)
....+. .++. ....++|+| +|.+.++- ..+.+ .|.-+..+. .+
T Consensus 188 ~~~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000000 1111 256789999 67766662 22221 233223232 11
Q ss_pred eeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEe-ecccccCCCCcccccceeEEEeCCCCCCeEEEE
Q 001367 970 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1048 (1091)
Q Consensus 970 ~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g 1048 (1091)
..+ .+......++| .+|.++++....+.|...++......... ....++.. .-.+..+++.| ||.++++.
T Consensus 262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence 111 12334567888 57776666556667777777644311000 00111111 12456788888 46666554
Q ss_pred e
Q 001367 1049 L 1049 (1091)
Q Consensus 1049 ~ 1049 (1091)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.36 E-value=0.048 Score=59.02 Aligned_cols=238 Identities=9% Similarity=0.076 Sum_probs=126.0
Q ss_pred CeeEEEecCCCC-EEEEEeCCeEEEEEccCceeEEEec-------CCCCCeEEEEEcCC---CCcEEEEEeC-------C
Q 001367 803 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM-------PPSPTATSLAFNPH---DNNVIAIGMD-------D 864 (1091)
Q Consensus 803 ~v~~l~~s~dg~-~la~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~l~~s~~---~~~~la~g~~-------d 864 (1091)
....++|.|||+ ++++...|.|++++.. ++....+. ........++|+|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 7776668999999854 33221111 12345689999994 3544444332 2
Q ss_pred CeEEEEeccCc--c-----ee-eeec-----cccCCeEEEEECCCCCEEEEEeCC-------------CcEEEEEcCCCc
Q 001367 865 STILIYNARSS--E-----VI-SKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG 918 (1091)
Q Consensus 865 g~i~iwd~~~~--~-----~~-~~l~-----~h~~~V~~l~~spdg~~las~s~D-------------g~i~vwd~~~~~ 918 (1091)
..|..|++..+ + .+ ..+. .|. ...|+|.|||.+.++.+.. |.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 1 11 1122 132 3579999999777765442 345555554310
Q ss_pred ee----------eeeeeeccCCCcCCCCCceEEEEcC-CCCEEEEE--ecCeEEEEEcCCccee----------------
Q 001367 919 IQ----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTCL---------------- 969 (1091)
Q Consensus 919 ~~----------~~~~~~~~~~~~~~~~~i~~l~fs~-dg~~la~~--~d~~i~vwd~~~~~~~---------------- 969 (1091)
.. ...... .++. ....++|.| +|++.++- .++.=.|.-+..+...
T Consensus 176 p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 000110 1221 267899999 67666662 2221122222211110
Q ss_pred -------------eeeecCCccCEEEEEEee-------CCCEEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccc
Q 001367 970 -------------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1029 (1091)
Q Consensus 970 -------------~~~~~~h~~~v~~v~fs~-------dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1091)
..+.-.+...+..++|.. +|.++++.-..+.|...++..+....... .+.. ..
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~----~~ 322 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILTD----RG 322 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESGG----GC
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cccC----CC
Confidence 000001233567788864 57777776677788888887664433221 1111 11
Q ss_pred cceeEEEeCCCCCCeEEEEe-cCCcEEEEec
Q 001367 1030 VYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1059 (1091)
Q Consensus 1030 v~~~~~~~~p~d~~~l~~g~-~dg~v~~w~~ 1059 (1091)
-.+..+++.| ||.++++.. .+| +||.+
T Consensus 323 ~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 2466788999 577665543 334 55555
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.29 E-value=0.018 Score=61.24 Aligned_cols=231 Identities=10% Similarity=0.023 Sum_probs=124.0
Q ss_pred EEEEEe---CCeEEEEEccCceeEE--EecCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEeccCccee--eeecc
Q 001367 815 YLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEVI--SKLEG 883 (1091)
Q Consensus 815 ~la~~~---dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~la~g~~d----g~i~iwd~~~~~~~--~~l~~ 883 (1091)
+++.|+ ...+.+||..+.+-.. .+.........+.+ ++++++.|+.+ ..+.+||..+.+-. ..+..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 444454 2579999988765332 22222222222332 66788888765 57899999886532 22222
Q ss_pred ccCCeEEEEECCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e--
Q 001367 884 HSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-- 954 (1091)
Q Consensus 884 h~~~V~~l~~spdg~~las~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~-- 954 (1091)
....-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+. .... -.+++ .-++++.+.| .
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~-----~~~~~-~~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML--TQRC-----SHGMV-EANGLIYVCGGSLG 160 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS--SCCB-----SCEEE-EETTEEEEECCEES
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc--CCcc-----eeEEE-EECCEEEEECCCCC
Confidence 1122222233 67777888765 45889999886543321111 1111 11222 2366666663 2
Q ss_pred -------cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceEEEeecccccC
Q 001367 955 -------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLR 1022 (1091)
Q Consensus 955 -------d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~ 1022 (1091)
-..+.+||..+.+....-.... ......+..-++++++.|+.+ ..+.+||+.+.+.... ..++
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~p 235 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV----SPMP 235 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC----CCCS
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC----CCCC
Confidence 3458899998876443211111 111112223367777777654 3588999998865422 2222
Q ss_pred CCCcccccceeEEEeCCCCCCeEEEEecC-----CcEEEEecCCCCCCcccCCCC
Q 001367 1023 PTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPPD 1072 (1091)
Q Consensus 1023 ~~~~~~~v~~~~~~~~p~d~~~l~~g~~d-----g~v~~w~~~~~~~~~~~~~~~ 1072 (1091)
.. .....++.. ++.+++.|+.+ ..+.+||+.. .+|...++.
T Consensus 236 ~~----r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~ 281 (306)
T 3ii7_A 236 WK----GVTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTET--DKWVANSKV 281 (306)
T ss_dssp CC----BSCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTT--TEEEEEEEE
T ss_pred CC----ccceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCC--CeEEeCCCc
Confidence 22 111112222 46888999865 4677888855 558876543
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.28 E-value=0.23 Score=53.60 Aligned_cols=233 Identities=17% Similarity=0.137 Sum_probs=118.6
Q ss_pred CCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC---CCE
Q 001367 334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSL 410 (1091)
Q Consensus 334 ~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~ 410 (1091)
-...+.++|.|||+ |+++ ..+|.|.+++ .+|+ .....+ . +..........|+|+|+ +.+
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~------------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASF------------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEEC------------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeecc------------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 34789999999997 6555 4559999997 4554 110000 0 11223456889999998 555
Q ss_pred EEEEEC----C----CEEEEEEeeCCc-cc---cee-EEEe-ccccCeeEEEEcCCCCceEEEEeeC-------------
Q 001367 411 LGVAYS----K----HIVQLYAYHGGS-DA---RQQ-LEID-AHVGNVNDLAFSAPCKQISVITCGD------------- 463 (1091)
Q Consensus 411 las~~~----d----~~i~iwd~~~~~-~~---~~~-~~~~-~h~~~v~~~~~s~d~~~~~l~s~~~------------- 463 (1091)
|.++.. + +.|..|+...+. .+ +.+ ..+. +.......++|.|||. +.++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 554432 3 567777776541 11 111 1122 1112346799999997 5555432
Q ss_pred CCcEEEEeCCCC---------ceeEEecCCCcceEEEeecccCCceEEEEEecCC---eEEEEecCCCC-----------
Q 001367 464 DKTIKVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLG----------- 520 (1091)
Q Consensus 464 d~~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~----------- 520 (1091)
.|.|.-++.... ..+.. .++.. ...++|++. ++.++++-...+ .|.+. ..+.
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~ 242 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIWS-YGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKA 242 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEEE-ECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEEE-EccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCC
Confidence 245555554321 01211 23333 345677542 344444432222 13222 1111
Q ss_pred -------ceeeecCCCCcEEEEEEc-------CCCCEEEEEecCCCCceEEEEEecCCc-eee--EEEecccccccceEE
Q 001367 521 -------ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTYQGLQLQHNSVSV 583 (1091)
Q Consensus 521 -------~~~~~~~~~~~i~~~~~s-------~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~v~~ 583 (1091)
....+.........++|. .+|.++++... .+.|...++... +.. ..+... ....+..
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~~ 316 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKN--VFGRLRD 316 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTT--TSCCEEE
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccC--CCCCeeE
Confidence 111221223356778883 46655554432 445777777643 222 122211 1256888
Q ss_pred EEEcCCCCEEEEEe
Q 001367 584 VHFDTAKDQILAAG 597 (1091)
Q Consensus 584 v~~~~~~~~l~~~s 597 (1091)
+++.|||...++..
T Consensus 317 v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 317 VVIDDDGGILISTS 330 (354)
T ss_dssp EEECTTSCEEEEEC
T ss_pred EEECCCCcEEEEEe
Confidence 99999986555543
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.24 E-value=0.016 Score=62.14 Aligned_cols=109 Identities=13% Similarity=0.122 Sum_probs=82.4
Q ss_pred EEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCC----CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce----
Q 001367 806 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---- 877 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~---- 877 (1091)
......+|.-++.+.++.||.-++......+.+... -..|..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 345667899999999999999998855555555543 23688999999 899999876 55799988873321
Q ss_pred --------eeeecc------ccCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCC
Q 001367 878 --------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 878 --------~~~l~~------h~~~V~~l~~spd---g~~las~s~Dg~i~vwd~~~ 916 (1091)
...+.- ...+|..+.|+|- +..|++-..|++|++||+..
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 111211 2467999999994 56899999999999999987
No 313
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.23 E-value=0.15 Score=55.09 Aligned_cols=107 Identities=15% Similarity=0.169 Sum_probs=62.7
Q ss_pred CCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCC---CCEE
Q 001367 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLL 411 (1091)
Q Consensus 335 ~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l 411 (1091)
...+.++|.|||+ ++++ ..+|.|.+++ +++.... .++ . +..........|+|+|| +.+|
T Consensus 31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~-----~~~-------~--v~~~g~~~p~gia~~pdf~~~g~l 92 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTY-----AEL-------S--VYHRGESGLLGLALHPRFPQEPYV 92 (352)
T ss_dssp SCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEE-----EEC-------C--CCCSTTCSEEEEEECTTTTTSCEE
T ss_pred CCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEe-----ecc-------e--EeecCCCCceeEEECCCCCCCCEE
Confidence 3788999999998 5555 4559999998 4432110 000 0 12223467889999998 5555
Q ss_pred EEEEC-C-----CEEEEEEeeCCccc--ceeE-EEe---ccccCeeEEEEcCCCCceEEEEe
Q 001367 412 GVAYS-K-----HIVQLYAYHGGSDA--RQQL-EID---AHVGNVNDLAFSAPCKQISVITC 461 (1091)
Q Consensus 412 as~~~-d-----~~i~iwd~~~~~~~--~~~~-~~~---~h~~~v~~~~~s~d~~~~~l~s~ 461 (1091)
.++.. . +.|..|+...+... +.+. .+. +.......++|.|||. +.++.
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 55433 2 56888887754211 1111 122 1112346899999996 45543
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.21 E-value=0.33 Score=52.02 Aligned_cols=269 Identities=10% Similarity=0.119 Sum_probs=159.6
Q ss_pred CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEE
Q 001367 357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 436 (1091)
Q Consensus 357 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~ 436 (1091)
.+|.|-|+..+..+..+++. --+.-.+|..+.+|.=. ..++.|+|+++.+.++ .
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~----------------------AdsAIMnP~~~iiALra-g~~lQiFnle~K~klk---s 101 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPIS----------------------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMK---A 101 (494)
T ss_dssp CEEEEEETTSTTSCEEEECC----------------------CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEE---E
T ss_pred CeEEEEECCCCCcceecccc----------------------cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhc---c
Confidence 47889999887766543321 11334677777666654 6789999999976544 2
Q ss_pred EeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCC-CceeEEecCCCc--ceEEEeecccCCceEEEEEe-------
Q 001367 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEGHGA--PVYSLCPHAKENIHFIFSIS------- 506 (1091)
Q Consensus 437 ~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~------- 506 (1091)
+.- ...|..=.|-.+.. |+-.+ +..|+-|++.. ..+.+.|..|.. ...-+.+..+++.++++..+
T Consensus 102 ~~~-~e~VvfWkWis~~~---l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 176 (494)
T 1bpo_A 102 HTM-TDDVTFWKWISLNT---VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 176 (494)
T ss_dssp EEC-SSCCCEEEEEETTE---EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred eec-CCCceEEEecCCCe---EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence 222 34566667765543 33333 45799999874 355666655542 12222333355666665443
Q ss_pred cCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCC--CEEEEEecCCCCceEEEEEecCCc---------eeeEEEeccc
Q 001367 507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESEG---------AIKRTYQGLQ 575 (1091)
Q Consensus 507 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~--~~l~~~~~~~~~~~~i~iwd~~~~---------~~~~~~~~~~ 575 (1091)
-.|.+.+|..+... ...+.+|......+.+..+. ..|++........+.+.+.++... +.+..+-...
T Consensus 177 v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe 255 (494)
T 1bpo_A 177 VVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 255 (494)
T ss_dssp EEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred ccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc
Confidence 24678888876543 33444444433333332211 123322221112356888887532 1111122222
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECCCCC
Q 001367 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 655 (1091)
Q Consensus 576 ~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 655 (1091)
...+-..++..++.-..++..+.-|.+.+||++++.++..-+.... .|...+......-++.....|.|.-..++...
T Consensus 256 ~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 256 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp STTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 2345566788888888999999999999999999999987765443 34444455555556666688888888877765
Q ss_pred eecc
Q 001367 656 SVDA 659 (1091)
Q Consensus 656 ~~~~ 659 (1091)
.+..
T Consensus 334 ivpy 337 (494)
T 1bpo_A 334 IIPY 337 (494)
T ss_dssp HHHH
T ss_pred chhh
Confidence 5543
No 315
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.20 E-value=0.1 Score=54.35 Aligned_cols=165 Identities=7% Similarity=0.043 Sum_probs=108.6
Q ss_pred ccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecC------CCccEEEEEE
Q 001367 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD------PGVSVNRVVW 404 (1091)
Q Consensus 331 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~l~~ 404 (1091)
....--..+++|.+....++++.-..++|..||...+..... . +.+ ....+..|.|
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~-----------------~~~~s~~g~~~~~~sGl~~ 70 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-V-----------------IDGASSNGDGEQQMSGLSL 70 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-C-----------------CTTTCCSSCCSEEEEEEEE
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-e-----------------cCCccccCCCcceeeEEEE
Confidence 344446678899886555767766789999999976654321 1 111 1224689999
Q ss_pred ---CCCCCEEEEEE-------------CCCEEEEEEee---CCcccceeEEEeccc-----------cCeeEEEEcCCCC
Q 001367 405 ---SPDGSLLGVAY-------------SKHIVQLYAYH---GGSDARQQLEIDAHV-----------GNVNDLAFSAPCK 454 (1091)
Q Consensus 405 ---spdg~~las~~-------------~d~~i~iwd~~---~~~~~~~~~~~~~h~-----------~~v~~~~~s~d~~ 454 (1091)
.|+++++++.. .+..|..+|+. +++.+... .+.... .....++..++|+
T Consensus 71 ~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn 149 (334)
T 2p9w_A 71 LTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN 149 (334)
T ss_dssp SSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC
T ss_pred eccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC
Confidence 68888887654 26779999999 77654322 232221 2488999999999
Q ss_pred ceEEEEeeCC-CcEEEEeCCCCceeEEec--C----CCcceEEEeecccCCceEEEEEecCCeEEEEecCCC
Q 001367 455 QISVITCGDD-KTIKVWDAVTGSRTYSFE--G----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 519 (1091)
Q Consensus 455 ~~~l~s~~~d-~~i~iwd~~~~~~~~~~~--~----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 519 (1091)
..++++.- +.|...+.. |+.+..+. . .....+.|+++| ++..|+.....|.+..+|+...
T Consensus 150 --aYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 150 --SYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp --EEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred --EEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 77778777 787777744 33333321 1 112256788854 6667777766999999998853
No 316
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=97.17 E-value=0.00029 Score=56.03 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=32.7
Q ss_pred CCchhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001367 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1091)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~ 35 (1091)
|++...||..||..||+|.||..||-+|+.||++.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999874
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.13 E-value=0.05 Score=57.55 Aligned_cols=222 Identities=11% Similarity=0.075 Sum_probs=118.1
Q ss_pred CeEEEEEccCceeEEEecCCCCCe-EEEEEcCCCCcEEEEEeCCC-----eEEEEeccCccee--eeeccccCCeEEEEE
Q 001367 822 GVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVI--SKLEGHSKRVTGLVF 893 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~dg-----~i~iwd~~~~~~~--~~l~~h~~~V~~l~~ 893 (1091)
..+.+||..+.+-...-..+.... .+++. - ++++++.|+.++ .+.+||..+.+-. ..+......-..+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 458889988765332211111111 12222 2 567888887553 6889998876532 222222122222233
Q ss_pred CCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e-------cCeEEE
Q 001367 894 SDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-------ETHLAI 960 (1091)
Q Consensus 894 spdg~~las~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~-------d~~i~v 960 (1091)
++++++.|+.++ .+.+||+.+.+......+.. .. .-.+++ .-++++++.| . -..+.+
T Consensus 108 --~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r-----~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 108 --NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT--RR-----SSVGVG-VVGGLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp --TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS--CC-----BSCEEE-EETTEEEEECCEETTTTEECCCEEE
T ss_pred --CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC--cc-----cCceEE-EECCEEEEEeCCCCCCCccccEEEE
Confidence 677788887654 47788988765433221111 11 111222 2366666663 2 235889
Q ss_pred EEcCCcceeeeeecCC-ccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceEEEeecccccCCCCcccccceeE
Q 001367 961 YEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1034 (1091)
Q Consensus 961 wd~~~~~~~~~~~~~h-~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1034 (1091)
||..+.+....-.... .... .+..-++++++.|+.+ ..+.+||+.+.+....- .++... ....+
T Consensus 178 yd~~~~~W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~~~~r----~~~~~ 247 (302)
T 2xn4_A 178 YNATTNEWTYIAEMSTRRSGA--GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA----DMNMCR----RNAGV 247 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSC--EEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC----CCSSCC----BSCEE
T ss_pred EeCCCCcEEECCCCccccccc--cEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC----CCCCcc----ccCeE
Confidence 9998776543211111 1111 1223367788888765 36899999988655321 222221 11112
Q ss_pred EEeCCCCCCeEEEEecCC-----cEEEEecCCCCCCcccCC
Q 001367 1035 IAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1070 (1091)
Q Consensus 1035 ~~~~p~d~~~l~~g~~dg-----~v~~w~~~~~~~~~~~~~ 1070 (1091)
+.. ++.+++.|+.++ .+.+||+.. .+|...+
T Consensus 248 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~ 283 (302)
T 2xn4_A 248 CAV---NGLLYVVGGDDGSCNLASVEYYNPTT--DKWTVVS 283 (302)
T ss_dssp EEE---TTEEEEECCBCSSSBCCCEEEEETTT--TEEEECS
T ss_pred EEE---CCEEEEECCcCCCcccccEEEEcCCC--CeEEECC
Confidence 222 468888888764 488898865 4588765
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.12 E-value=0.022 Score=60.39 Aligned_cols=224 Identities=12% Similarity=0.055 Sum_probs=119.2
Q ss_pred CeEEEEEccCceeEEEecCCCCCe-EEEEEcCCCCcEEEEEeCC-----CeEEEEeccCcc---e--eeeeccccCCeEE
Q 001367 822 GVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMDD-----STILIYNARSSE---V--ISKLEGHSKRVTG 890 (1091)
Q Consensus 822 g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~d-----g~i~iwd~~~~~---~--~~~l~~h~~~V~~ 890 (1091)
..+.+||..+.+-...-..+.... .+++. . ++++++.|+.+ ..+.+||..+.+ - +..+......-..
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 358899988765332211111111 22222 3 56788888765 368999988765 2 2222222222222
Q ss_pred EEECCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ec-----CeEE
Q 001367 891 LVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----THLA 959 (1091)
Q Consensus 891 l~~spdg~~las~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d-----~~i~ 959 (1091)
+.+ ++++++.|+.+ ..+.+||+.+.+......+ +... ....+..-++++++.| .+ ..+.
T Consensus 109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r------~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 178 (301)
T 2vpj_A 109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM--QTAR------EGAGLVVASGVIYCLGGYDGLNILNSVE 178 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC--SSCC------BSCEEEEETTEEEEECCBCSSCBCCCEE
T ss_pred EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC--CCCc------ccceEEEECCEEEEECCCCCCcccceEE
Confidence 223 67777777654 3588999888664332221 1111 1112222366666663 32 4689
Q ss_pred EEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceEEEeecccccCCCCcccccceeE
Q 001367 960 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1034 (1091)
Q Consensus 960 vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1034 (1091)
+||..+.+....-.... ......+..-+++.++.|+.+ ..+.+||+.+.+....- .++.. .....+
T Consensus 179 ~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~----~~p~~----r~~~~~ 249 (301)
T 2vpj_A 179 KYDPHTGHWTNVTPMAT-KRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT----SMTTP----RCYVGA 249 (301)
T ss_dssp EEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC----CCSSC----CBSCEE
T ss_pred EEeCCCCcEEeCCCCCc-ccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC----CCCCc----ccceeE
Confidence 99998776543211111 111112223367777777764 46899999988765321 22222 111112
Q ss_pred EEeCCCCCCeEEEEecCC-----cEEEEecCCCCCCcccCCC
Q 001367 1035 IAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1071 (1091)
Q Consensus 1035 ~~~~p~d~~~l~~g~~dg-----~v~~w~~~~~~~~~~~~~~ 1071 (1091)
+.. ++.+++.|+.++ .+.+||+.. .+|...++
T Consensus 250 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~ 286 (301)
T 2vpj_A 250 TVL---RGRLYAIAGYDGNSLLSSIECYDPII--DSWEVVTS 286 (301)
T ss_dssp EEE---TTEEEEECCBCSSSBEEEEEEEETTT--TEEEEEEE
T ss_pred EEE---CCEEEEEcCcCCCcccccEEEEcCCC--CeEEEcCC
Confidence 222 367888888763 567788754 56876654
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.95 E-value=0.072 Score=56.72 Aligned_cols=230 Identities=11% Similarity=0.081 Sum_probs=121.5
Q ss_pred eCCeEEEEEccCceeEE-EecCCCCCeEEEEEcCCCCcEEEEEeC-----C------CeEEEEeccCccee--eeecccc
Q 001367 820 SGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEVI--SKLEGHS 885 (1091)
Q Consensus 820 ~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~la~g~~-----d------g~i~iwd~~~~~~~--~~l~~h~ 885 (1091)
+...+.+||..+.+-.. .+..+.......+... ++++++.|+. . ..+..||..+.+-. ..+....
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 34789999998776432 2222223333334444 6778888873 1 13788898876532 2222111
Q ss_pred CCeEEEEECCCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e-c
Q 001367 886 KRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E 955 (1091)
Q Consensus 886 ~~V~~l~~spdg~~las~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~-d 955 (1091)
..-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+. .. .....+...++++++.| . +
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~------r~~~~~~~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP--YV------VYGHTVLSHMDLVYVIGGKGS 159 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS--SC------CBSCEEEEETTEEEEECCBCT
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC--Cc------ccceeEEEECCEEEEEeCCCC
Confidence 11122222 56777777742 45889999886533221111 11 11122233566666664 3 2
Q ss_pred -----CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCC-----cEEEEeCCCCceEEEeecccccCCCC
Q 001367 956 -----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRILSTAYLRPTT 1025 (1091)
Q Consensus 956 -----~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~ 1025 (1091)
..+.+||..+.+....-... .......+..-+++.++.|+.++ .+.+||+.+.+.... ...+..
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~- 233 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF----EAFPQE- 233 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE----CCCSSC-
T ss_pred CCcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEEC----CCCCCc-
Confidence 36999999877543321111 11111122234778888888664 488899988865532 122222
Q ss_pred cccccceeEEEeCCCCCCeEEEEecCC--------------cEEEEecCCCCCCcccCCCCcc
Q 001367 1026 SCLHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPDEI 1074 (1091)
Q Consensus 1026 ~~~~v~~~~~~~~p~d~~~l~~g~~dg--------------~v~~w~~~~~~~~~~~~~~~~~ 1074 (1091)
.....++.. ++.+++.|+.++ .+.+||+.. .+|...+|..+
T Consensus 234 ---r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~r 288 (315)
T 4asc_A 234 ---RSSLSLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEE--KKWEGVLREIA 288 (315)
T ss_dssp ---CBSCEEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT--TEEEEEESCSS
T ss_pred ---ccceeEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCC--ChhhhhccCCc
Confidence 111112222 368888888743 356777744 46887754443
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.90 E-value=0.3 Score=52.71 Aligned_cols=242 Identities=8% Similarity=-0.022 Sum_probs=119.9
Q ss_pred ccEEEEEECCCCCEEEEEECCCEEEEEEeeCCcccceeEEE----eccccCeeEEEEcCC---CCceEEEEeeC------
Q 001367 397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI----DAHVGNVNDLAFSAP---CKQISVITCGD------ 463 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~----~~h~~~v~~~~~s~d---~~~~~l~s~~~------ 463 (1091)
.....|+|.|||++|.++...|.|++++.. +........+ .........++|+|+ +..+++.....
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 467899999999944455567889888743 2211111011 112345689999996 55433332221
Q ss_pred CCcEEEEeCCCC--ce--eEE----ec---CCCcceEEEeecccCCceEEEEEecC-------------CeEEEEecCCC
Q 001367 464 DKTIKVWDAVTG--SR--TYS----FE---GHGAPVYSLCPHAKENIHFIFSISVD-------------GKIKAWLYDSL 519 (1091)
Q Consensus 464 d~~i~iwd~~~~--~~--~~~----~~---~~~~~v~~~~~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~ 519 (1091)
...|..|++..+ .. ... +. .....-..++|. +||.+.++.+.. |.|.-++.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666665433 11 111 11 011123457774 466655554432 45666665432
Q ss_pred C------------ceeeecCCCCcEEEEEEcC-CCCEEEEEecCCCCceEEEEEe--------cCCc-------------
Q 001367 520 G------------ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWN--------ESEG------------- 565 (1091)
Q Consensus 520 ~------------~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd--------~~~~------------- 565 (1091)
- ....+...-.....++|.| +|+..++ -...++...|.+.. ...+
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 0 1111111223467899999 5554443 32211112232211 1000
Q ss_pred --------eeeEEEecccccccceEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCeeEEEEeC-CCCCCCCceEE
Q 001367 566 --------AIKRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRIC 629 (1091)
Q Consensus 566 --------~~~~~~~~~~~~~~~v~~v~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~ 629 (1091)
..+..+.. ...+..+.|.. ++.++++.-..+.|...+++.++....... ......+..++
T Consensus 254 ~~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR 329 (353)
T ss_dssp BSSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred CCCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence 00111111 12456677753 456666666778888888776654433221 11123578899
Q ss_pred EccCCCEEEEEE-CCCeE
Q 001367 630 FNKNGTLLAVIA-NENRI 646 (1091)
Q Consensus 630 ~s~~~~~l~~~~-~dg~i 646 (1091)
+.|||.+.++.. .+|.|
T Consensus 330 ~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 330 TGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp ECTTSCEEEEECSTTEEE
T ss_pred ECCCCcEEEEEeCCCCEE
Confidence 999998555433 24443
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.88 E-value=0.043 Score=58.30 Aligned_cols=235 Identities=11% Similarity=0.058 Sum_probs=123.2
Q ss_pred cCCCCEEEEEe-----CCeEEEEEccCceeEEEecCCCCCe-EEEEEcCCCCcEEEEEeC----C-----CeEEEEeccC
Q 001367 810 SKNDAYLFSAS-----GGVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMD----D-----STILIYNARS 874 (1091)
Q Consensus 810 s~dg~~la~~~-----dg~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~----d-----g~i~iwd~~~ 874 (1091)
.-++.+++.|+ -..+.+||..+.+-...-..+.... .+++. - ++++++.|+. + ..+.+||..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 34566666665 1468999988765333211111111 12222 2 5677777776 2 3688899887
Q ss_pred ccee--eeeccccCCeEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC
Q 001367 875 SEVI--SKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 947 (1091)
Q Consensus 875 ~~~~--~~l~~h~~~V~~l~~spdg~~las~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg 947 (1091)
.+-. ..+......-..+.+ ++++++.|+.+ ..+.+||..+.+......+ +.... ....+.+ ++
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~----~~~~~~~--~~ 169 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--LTRRI----GVGVAVL--NR 169 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--SSCCB----SCEEEEE--TT
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--Ccccc----ceEEEEE--CC
Confidence 6532 222221222222333 67777777644 3588999988653332211 11111 1122222 56
Q ss_pred CEEEEE-ec-----CeEEEEEcCCcceeeeeecCC-ccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceEEEe
Q 001367 948 TRFLLV-HE-----THLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 948 ~~la~~-~d-----~~i~vwd~~~~~~~~~~~~~h-~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~~~~ 1015 (1091)
++++.| .+ ..+.+||..+.+....-.... ...-..+ .-+++.++.|+.+ ..+.+||+.+.+....
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~- 246 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC--VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV- 246 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE--EECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-
Confidence 666663 32 468999988776443211111 1111222 2377777777765 4699999998765421
Q ss_pred ecccccCCCCcccccceeEEEeCCCCCCeEEEEecCC-----cEEEEecCCCCCCcccCCC
Q 001367 1016 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1071 (1091)
Q Consensus 1016 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg-----~v~~w~~~~~~~~~~~~~~ 1071 (1091)
..++.. .... .++.. ++.+++.|+.++ .+.+||+.. .+|...++
T Consensus 247 ---~~~p~~----r~~~-~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~ 295 (308)
T 1zgk_A 247 ---APMKHR----RSAL-GITVH--QGRIYVLGGYDGHTFLDSVECYDPDT--DTWSEVTR 295 (308)
T ss_dssp ---CCCSSC----CBSC-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEEE
T ss_pred ---CCCCCC----ccce-EEEEE--CCEEEEEcCcCCCcccceEEEEcCCC--CEEeecCC
Confidence 122222 0111 12222 468888888653 577888854 46876643
No 322
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.77 E-value=0.052 Score=57.41 Aligned_cols=235 Identities=11% Similarity=0.000 Sum_probs=116.3
Q ss_pred CCCEEEEEE-CC-----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC-----CcEEEEeCCCC
Q 001367 407 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 475 (1091)
Q Consensus 407 dg~~las~~-~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~ 475 (1091)
++..++.|+ .+ ..+.+||+.+++-.. ...+...... ..+...+++ +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~--~~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRY--VASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBS--CEEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhcc--ccEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666665 32 358888887754211 1111111111 112223455 66667654 46899998877
Q ss_pred c---eeEE--ecCCCcceEEEeecccCCceEEEEEecCC-----eEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEE
Q 001367 476 S---RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545 (1091)
Q Consensus 476 ~---~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 545 (1091)
+ -... +.........+.+ ++.+++.|+.++ .+.+||+.+.+-...-..........+..-+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 3222 1111111111222 456777776543 577888766543222111111111111222666666
Q ss_pred EEecCCC-CceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCC
Q 001367 546 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 546 ~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~ 619 (1091)
.++.++. ....+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-...
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 6654322 13458899988876544321111 1112222332 45566666643 46899999988765543322
Q ss_pred CCCCCCceEEEccCCCEEEEEECC-----CeEEEEECCCCC
Q 001367 620 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESN 655 (1091)
Q Consensus 620 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 655 (1091)
.. .....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 22 11222223367777777654 457888887653
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.76 E-value=0.19 Score=53.00 Aligned_cols=235 Identities=10% Similarity=-0.045 Sum_probs=116.0
Q ss_pred eEEEEEcCC--CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECC----CEEE
Q 001367 348 TLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK----HIVQ 421 (1091)
Q Consensus 348 ~llasg~~d--g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~i~ 421 (1091)
.|++.|+.+ ..+.+||..+++-..... +......-.++.+ +++.++.|+.+ ..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~-----------------~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 73 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRC-----------------PFEKRRDAACVFW--DNVVYILGGSQLFPIKRMD 73 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCC-----------------CSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCC-----------------CCcccceeEEEEE--CCEEEEEeCCCCCCcceEE
Confidence 466777653 568888888765432111 1111111222222 67777777754 5788
Q ss_pred EEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC------CcEEEEeCCCCceeEEecCC--CcceEEEee
Q 001367 422 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSRTYSFEGH--GAPVYSLCP 493 (1091)
Q Consensus 422 iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~ 493 (1091)
+||+.+++-.. ...+......-..+. -+++ +++.|+.+ ..+.+||..+.+-...-... ...-..+.+
T Consensus 74 ~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 148 (306)
T 3ii7_A 74 CYNVVKDSWYS-KLGPPTPRDSLAACA--AEGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA 148 (306)
T ss_dssp EEETTTTEEEE-EECCSSCCBSCEEEE--ETTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEeCCCCeEEE-CCCCCccccceeEEE--ECCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE
Confidence 89988764221 111111111112222 2555 56666654 46889998877543221111 111111222
Q ss_pred cccCCceEEEEEec---------CCeEEEEecCCCCceeeecCCCCcE-EEEEEcCCCCEEEEEecCCC-CceEEEEEec
Q 001367 494 HAKENIHFIFSISV---------DGKIKAWLYDSLGARVDYDAPGLGC-TRMAYSANGRRLFSCGTSKE-GESFLVEWNE 562 (1091)
Q Consensus 494 ~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i-~~~~~s~d~~~l~~~~~~~~-~~~~i~iwd~ 562 (1091)
++.+++.|+. -..+.+||+.+..-...-....... .+++. -+++.++.++.+.. ....+.+||+
T Consensus 149 ----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~ 223 (306)
T 3ii7_A 149 ----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDI 223 (306)
T ss_dssp ----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEET
T ss_pred ----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeC
Confidence 4466666654 3447788887654222211111111 12222 25666666654321 1245889999
Q ss_pred CCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeEE
Q 001367 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLT 614 (1091)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~ 614 (1091)
.+.+-...-.... ......++.+ ++..++.|+.+ ..+.+||..+.+...
T Consensus 224 ~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 224 KLNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp TTTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 8875433211111 1122333333 55666667643 568899998876543
No 324
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.72 E-value=0.83 Score=48.67 Aligned_cols=208 Identities=10% Similarity=0.037 Sum_probs=114.9
Q ss_pred ccEEEEEECCCCCEEEEEE------------CCCEEEEEEeeCCc-ccceeEEEec-----cccCeeEEEEcC--CCCce
Q 001367 397 VSVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGS-DARQQLEIDA-----HVGNVNDLAFSA--PCKQI 456 (1091)
Q Consensus 397 ~~V~~l~~spdg~~las~~------------~d~~i~iwd~~~~~-~~~~~~~~~~-----h~~~v~~~~~s~--d~~~~ 456 (1091)
...-.++..|+|..+++++ .+|.|.++|..+.. ..+.+ .+.+ .......+.+.+ ++...
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 3455667888886666652 68899999987432 12222 3333 234566777765 45432
Q ss_pred EEEEeeC--CCcEEEEeCCCCce----eEEecCC-CcceEEEeecccCCceEEEEEe-----------------cCCeEE
Q 001367 457 SVITCGD--DKTIKVWDAVTGSR----TYSFEGH-GAPVYSLCPHAKENIHFIFSIS-----------------VDGKIK 512 (1091)
Q Consensus 457 ~l~s~~~--d~~i~iwd~~~~~~----~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~-----------------~dg~i~ 512 (1091)
++++-.. +.+|.+|++..+.. +.++.+. -...+.+.+. ++|.+.++.. ..|.|.
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 3333333 56788887765322 2334332 2345677774 3566666543 124444
Q ss_pred EEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCC-cee--eEEEecccccccceEEEEEcC-
Q 001367 513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT- 588 (1091)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~v~~~~- 588 (1091)
.+|. .+.. .....-...+.++|+||++.++.+.. ....|+.|++.. ++. .+.+. . ......+++.+
T Consensus 207 r~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~-~---~g~PDGi~vD~e 276 (355)
T 3sre_A 207 YYSP--NDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS-F---DTLVDNISVDPV 276 (355)
T ss_dssp EECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE-C---SSEEEEEEECTT
T ss_pred EEEC--CeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe-C---CCCCceEEEeCC
Confidence 4443 3222 22222234678999999999887754 256799998863 332 22331 1 25677889999
Q ss_pred CCCEEEEEeCC-CeEEEEECC--CCeeEEEEe
Q 001367 589 AKDQILAAGDD-HVIKIWDMN--KVQLLTTID 617 (1091)
Q Consensus 589 ~~~~l~~~s~d-g~i~iwd~~--~~~~~~~~~ 617 (1091)
+|+..+++..+ +.|..|+.. .+..+..+.
T Consensus 277 ~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 277 TGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp TCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 58877766533 344444443 234444443
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.66 E-value=0.022 Score=54.90 Aligned_cols=183 Identities=8% Similarity=-0.012 Sum_probs=97.5
Q ss_pred CCcEEEEEeCCCeEEEEeccCcce-----eeeeccc--cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee----e
Q 001367 854 DNNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT----C 922 (1091)
Q Consensus 854 ~~~~la~g~~dg~i~iwd~~~~~~-----~~~l~~h--~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~----~ 922 (1091)
.+.+|.+..+| +++.=...++.. ..+..++ -..++.++|+|+|.+.+. .+|.+.--+..+..... .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34566767777 666655554431 1112223 247889999999997776 66754444433211100 0
Q ss_pred eeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCcceee-----eee-cCCccCEEEEEEeeCCCEEEEEE
Q 001367 923 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-----QWF-PISSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 923 ~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~-----~~~-~~h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
..+-. .+.. .-.++.|.|+|.+.++ .||.|+-++-.+...-. ... ..--..+..|.|.|+|.+.++.
T Consensus 80 t~IG~-~Gw~----~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 80 KKIGN-GGWN----QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp EEEEC-SCGG----GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred cEecc-cccc----cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 01100 0111 1368999999999998 77999888764322110 001 1112567999999999877765
Q ss_pred cCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCc
Q 001367 997 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1053 (1091)
Q Consensus 997 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~ 1053 (1091)
|+.++-+..+++....-+.....+.. ....++.+ +.|.| ++.+.++. +|.
T Consensus 153 -dg~lyr~~~P~~~~~~wl~~~~~~g~--~g~~~yr~-l~f~~-~G~l~~v~--~g~ 202 (236)
T 1tl2_A 153 -GQQFYKALPPVSNQDNWLARATKIGQ--GGWDTFKF-LFFSS-VGTLFGVQ--GGK 202 (236)
T ss_dssp -TTEEEEECCCSSTTCCHHHHCEEEES--SSGGGEEE-EEECT-TSCEEEEE--TTE
T ss_pred -CCcEEecCCCCCCCcccccccceecc--CCcceEEE-EEECC-CCcEEEEe--CCe
Confidence 88765444443321111110111111 13445555 44888 35555544 663
No 326
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.59 E-value=0.5 Score=50.37 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=92.9
Q ss_pred CeEEEEEcCCCCcEEEEE------------eCCCeEEEEeccCc--cee-eeecc-----ccCCeEEEEECC--CCC-EE
Q 001367 844 TATSLAFNPHDNNVIAIG------------MDDSTILIYNARSS--EVI-SKLEG-----HSKRVTGLVFSD--ALN-IL 900 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g------------~~dg~i~iwd~~~~--~~~-~~l~~-----h~~~V~~l~~sp--dg~-~l 900 (1091)
....++..| +|..++++ ..+|.|.++|..+. +.. ..+.+ .......+.+.+ +|. +|
T Consensus 51 G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345566777 66554443 26899999998742 221 12222 234667777755 454 34
Q ss_pred EEE-eC--CCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEe----c--------------CeEE
Q 001367 901 VSS-GG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----E--------------THLA 959 (1091)
Q Consensus 901 as~-s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~----d--------------~~i~ 959 (1091)
..+ .. +.+|.+|+++..... ...+....+..- .....+.+.++|.+.++.. | +.|.
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCE-EEEEeccccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 444 22 567888888764322 233444444322 3578999999999888742 1 3444
Q ss_pred EEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEE-cCCcEEEEeCCC
Q 001367 960 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASN 1008 (1091)
Q Consensus 960 vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~-~dg~v~iwd~~~ 1008 (1091)
-||. ++ +..... .-.....++||||++.|+.+. ..+.|..|++..
T Consensus 207 r~d~--~~-~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 207 YYSP--ND-VRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EECT--TC-CEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EEEC--Ce-EEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 4444 32 222221 234678899999998877665 467899999864
No 327
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.57 E-value=0.11 Score=54.76 Aligned_cols=233 Identities=12% Similarity=0.043 Sum_probs=113.4
Q ss_pred CCEEEEEECC----CEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCC-----CcEEEEeCCCCcee
Q 001367 408 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT 478 (1091)
Q Consensus 408 g~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~~~ 478 (1091)
+..++.|+.+ ..+..||+.+++-.. ...+......-..+. -+++ +++.|+.+ ..+.+||..+.+-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRAGMVY--MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE--ETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccceEEE--ECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455555533 357888887754211 111111111111122 2455 66667654 35889998876533
Q ss_pred EEe--cCCCcceEEEeecccCCceEEEEEecCC-----eEEEEecCCCCceeeecCCCCc-EEEEEEcCCCCEEEEEecC
Q 001367 479 YSF--EGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTS 550 (1091)
Q Consensus 479 ~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~-i~~~~~s~d~~~l~~~~~~ 550 (1091)
..- .........+.+ ++.+++.|+.++ .+.+||+.+.+-...-...... -.+++. -+++.++.++.+
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 165 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYD 165 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEE
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCC
Confidence 221 111111112222 456777777553 4677777654422221111111 112222 356666666543
Q ss_pred CCC---ceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCCCCC
Q 001367 551 KEG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGL 622 (1091)
Q Consensus 551 ~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~ 622 (1091)
... ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~- 241 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC- 241 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-
Confidence 322 3458899998876543321111 1122222222 45666666643 4689999988776544332221
Q ss_pred CCCceEEEccCCCEEEEEECC-----CeEEEEECCCCC
Q 001367 623 PENPRICFNKNGTLLAVIANE-----NRIKILETPESN 655 (1091)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 655 (1091)
.....+..-++++++.|+.+ ..+.+||..+..
T Consensus 242 -r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 242 -RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp -CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred -cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 11222222367777777654 347888887663
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.50 E-value=1.1 Score=47.44 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=58.5
Q ss_pred CeeEEEecCCCCEEEEEe--CCeEEEEEccCcee------------------EEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 001367 803 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGM 862 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~~~~~la~g~ 862 (1091)
....++|.|+|.+.++-. ++.-.|--+..+.. +..+..+......++|.. +.+++..-
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l 280 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGL 280 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEES
T ss_pred CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeeccc
Confidence 356789999988776653 33223332232221 111221223556788874 55666566
Q ss_pred CCCeEEEEeccCcce----eeeeccccCCeEEEEECCCCCEEEEEe
Q 001367 863 DDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG 904 (1091)
Q Consensus 863 ~dg~i~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~las~s 904 (1091)
..+.|....+..+.. ...+.+..+++..|+..|||.++++.+
T Consensus 281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 666777777765432 233445557899999999998777654
No 329
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.45 E-value=0.19 Score=62.30 Aligned_cols=233 Identities=13% Similarity=0.121 Sum_probs=142.2
Q ss_pred EEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc-ceeeeeccc
Q 001367 806 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGH 884 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~-~~~~~l~~h 884 (1091)
+.-.+|..+.+|.-.+.++.|||+++...++.+.-+ ..|.--.|-. .+.|+..+ +..|+-|++... .++..+.-|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 455788888888888889999999988877776643 3455556653 34566555 557999999742 444555545
Q ss_pred ----cCCeEEEEECCCCCEEEEEe-------CCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEE--cC-CCCEE
Q 001367 885 ----SKRVTGLVFSDALNILVSSG-------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF--HK-DQTRF 950 (1091)
Q Consensus 885 ----~~~V~~l~~spdg~~las~s-------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~f--s~-dg~~l 950 (1091)
...|..-..+++.++++..| -.|.+.+|..+.+ .-+..+||.. ....+.. .+ ....+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------~sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------cchhhhHhHh---hhheeccCCCCCCceEE
Confidence 45677788899999987544 3478889998873 3455566654 1111211 11 12233
Q ss_pred EEEe----cCeEEEEEcCCc---ce------eeeeecC--CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEe
Q 001367 951 LLVH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1015 (1091)
Q Consensus 951 a~~~----d~~i~vwd~~~~---~~------~~~~~~~--h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~ 1015 (1091)
+-+. .++++|-++... .. +..++++ -..-..++..|+.-..+...+.-|.|.++|+.+|..+..-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 3232 268888887543 11 1111111 1333445677777777778889999999999999887443
Q ss_pred ecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCC
Q 001367 1016 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1062 (1091)
Q Consensus 1016 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~ 1062 (1091)
+ .++..|... +.++. ..-+++....|.|.--.+.+.
T Consensus 297 r--------is~~~iF~~--~~~~~-~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 297 R--------ISGETIFVT--APHEA-TAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred c--------ccCCceEEe--ccCCC-CCceEEEcCCceEEEEEEccc
Confidence 3 112333322 22222 233555557888777776553
No 330
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.43 E-value=1.6 Score=48.42 Aligned_cols=113 Identities=16% Similarity=0.102 Sum_probs=77.1
Q ss_pred CeeEEEecCCCCEEEEEe--CCeEEEEEccCcee-------------EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 001367 803 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-------------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 867 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~-------------~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i 867 (1091)
..-.+-++|||+++++++ +.++.++|+.+... ..... ........+|.+ +|....+-.-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence 445678999999999998 68899999885221 12222 334567899999 78666777789999
Q ss_pred EEEeccCc----------ceeeeeccccCCeEEEEE------CCCCCEEEEEe---CCCc----------EEEEEcCCCc
Q 001367 868 LIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQ----------IFVWDVDGWG 918 (1091)
Q Consensus 868 ~iwd~~~~----------~~~~~l~~h~~~V~~l~~------spdg~~las~s---~Dg~----------i~vwd~~~~~ 918 (1091)
.-|++... ..+..+.-|-. +-.+.- .|||++|++.. .|+. -.+.|++..+
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 99999763 34455554543 222332 57999999874 4554 3677776544
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.35 E-value=0.19 Score=53.40 Aligned_cols=230 Identities=10% Similarity=-0.022 Sum_probs=112.0
Q ss_pred EEEEECCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC-----C------CcEEEEeCCCCceeE
Q 001367 411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTY 479 (1091)
Q Consensus 411 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~-----d------~~i~iwd~~~~~~~~ 479 (1091)
++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||..+++-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 33444 568899988865321 22222222233333344566 5666663 1 127788988765322
Q ss_pred EecCCCcceE--EEeecccCCceEEEEEecC--------CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEec
Q 001367 480 SFEGHGAPVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549 (1091)
Q Consensus 480 ~~~~~~~~v~--~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 549 (1091)
+.....+.. +++. . ++.+++.|+.+ ..+.+||..+.+=...-..+.......+...+++.++.++.
T Consensus 82 -~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 211111111 1111 1 44666776643 34788887765322211111111111122245666666654
Q ss_pred CC--CCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeEEEEeCCCCC
Q 001367 550 SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGL 622 (1091)
Q Consensus 550 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~ 622 (1091)
.. .....+.+||..+.+-...-.... ......++.+ +++.++.|+.++ .+.+||+.+.+....-.....
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 233 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE- 233 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 11 123458899988875433221111 1112222222 556666676543 588999988766554332222
Q ss_pred CCCceEEEccCCCEEEEEECC--------------CeEEEEECCCCC
Q 001367 623 PENPRICFNKNGTLLAVIANE--------------NRIKILETPESN 655 (1091)
Q Consensus 623 ~~v~~v~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~ 655 (1091)
.....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 11222222356777777653 246778877663
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.25 E-value=0.31 Score=52.75 Aligned_cols=240 Identities=12% Similarity=0.043 Sum_probs=118.1
Q ss_pred CCCEEEEEe--CCeEEEEEccC----ceeEEEec-CCCCCeEEEEEcCCCCcEEEEEeC-C---------CeEEEEeccC
Q 001367 812 NDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNARS 874 (1091)
Q Consensus 812 dg~~la~~~--dg~i~iwd~~~----~~~~~~~~-~~~~~i~~l~~s~~~~~~la~g~~-d---------g~i~iwd~~~ 874 (1091)
++++++.|+ ...+.+||..+ ++.+..+. .......++.+ ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 667767665 46799999863 33333322 11112222233 5677777776 2 3688999987
Q ss_pred ccee--eeec-cccCCeEEEEECCCCCEEEEEeCC---------------------------------------CcEEEE
Q 001367 875 SEVI--SKLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFVW 912 (1091)
Q Consensus 875 ~~~~--~~l~-~h~~~V~~l~~spdg~~las~s~D---------------------------------------g~i~vw 912 (1091)
.+-. ..+. .....-.++. .++++++.|+.+ ..+.+|
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred CcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 6532 2222 1111122222 577888888865 468899
Q ss_pred EcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e------cCeEEEEEc--CCcceeeeeecCC-ccCEEE
Q 001367 913 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQWFPIS-SVPISQ 982 (1091)
Q Consensus 913 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~------d~~i~vwd~--~~~~~~~~~~~~h-~~~v~~ 982 (1091)
|..+.+-.....+..... .-.+++. -++++++.| . ...+.+||+ .+.+....-.... ......
T Consensus 174 d~~~~~W~~~~~~p~~~~------~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 174 DPSTQQWSYAGESPWYGT------AGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp ETTTTEEEEEEECSSCCC------BSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred eCCCCcEEECCCCCCCCc------ccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 998866433221111100 0022232 355665553 2 235777886 4443322111111 111122
Q ss_pred EEEeeCCCEEEEEEcC----------------------CcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCC
Q 001367 983 ATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL 1040 (1091)
Q Consensus 983 v~fs~dg~~l~t~~~d----------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~ 1040 (1091)
.+...+++.++.|+.+ ..+.+||+.+.+.... ..++... ....++.+
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~r----~~~~~~~~--- 315 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS----GELSQGR----AYGVSLPW--- 315 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE----EECSSCC----BSSEEEEE---
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC----CCCCCCc----ccceeEEe---
Confidence 2344577777777743 2578899988765532 1223221 11112223
Q ss_pred CCCeEEEEecCCc----EEEEecCCCCCCcccCCCCcc
Q 001367 1041 KPTQFAVGLTNGE----VYVIEPNEPGDTWAVLPPDEI 1074 (1091)
Q Consensus 1041 d~~~l~~g~~dg~----v~~w~~~~~~~~~~~~~~~~~ 1074 (1091)
++.+++.||.++. =-+|-+.-...+|....|...
T Consensus 316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~ 353 (357)
T 2uvk_A 316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHH 353 (357)
T ss_dssp TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC----
T ss_pred CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccc
Confidence 4789999997642 135544445677888877653
No 333
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.15 E-value=0.096 Score=50.57 Aligned_cols=145 Identities=9% Similarity=0.023 Sum_probs=84.8
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce------eeee--ccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 844 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------ISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~------~~~l--~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
.++.++|+| ++.+.++ .+|.++-.+..++.. -..+ .+... -.++.|.|+|.+.++ .||.|+-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 667999999 8887776 778877777655221 0111 01112 478999999998887 56988777653
Q ss_pred CCceeeee--eeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCccee-----eeeec-CCccCEEEEEEee
Q 001367 916 GWGIQTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----KQWFP-ISSVPISQATFSC 987 (1091)
Q Consensus 916 ~~~~~~~~--~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~-----~~~~~-~h~~~v~~v~fs~ 987 (1091)
+....... ....-.+.-. .+..+.|.|+|.+-++. ++.++-....++... ..... +....-+.+.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~---~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWS---GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGG---GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred cCCCCceeccccEeccCCCC---ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 32211100 0011111111 47899999999999998 888654433322211 11111 2233445577888
Q ss_pred CCCEEEEEEcCCc
Q 001367 988 DCRMVFTSFVDGT 1000 (1091)
Q Consensus 988 dg~~l~t~~~dg~ 1000 (1091)
+|...++. +|.
T Consensus 192 ~G~l~~v~--~g~ 202 (236)
T 1tl2_A 192 VGTLFGVQ--GGK 202 (236)
T ss_dssp TSCEEEEE--TTE
T ss_pred CCcEEEEe--CCe
Confidence 88877655 663
No 334
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.14 E-value=0.09 Score=56.35 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=80.2
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceee-------eceeEEeccccccceeeeeecCCCccEEEEEECC--
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-------RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-- 406 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-- 406 (1091)
+|..+..||+|++ ||..+ +.+|.|-.+..+..... ...+.|.++.. ......+|..+-|+|
T Consensus 67 ~i~qlvlSpsG~l-LAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~--------~~~~~s~I~qVlWHPl~ 136 (452)
T 3pbp_A 67 DTFHVISSTSGDL-LCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE--------EVGPKSSIKKVLFHPKS 136 (452)
T ss_dssp TTCEEEECTTSSE-EEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC--------C--CCCCEEEEEECTTB
T ss_pred ceeEEEECCCCCE-EEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCc--------ccCCCCceeEEEecccc
Confidence 7888999999995 45543 37899999875432221 01112222110 011467899999999
Q ss_pred -CCCEEEEEECCCEEEEEEeeCCcccceeEEEe---------ccccCeeEEEEcCCCCceEEEEeeCCCcEEEEe
Q 001367 407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471 (1091)
Q Consensus 407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd 471 (1091)
.+..|++-..|++|++||+....... . .+. .....|.+++|.+++-.+++++....|.|+-.-
T Consensus 137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P-~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 137 YRDSCIVVLKEDDTITMFDILNSQEKP-I-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp GGGCEEEEEETTSCEEEEETTCTTSCC-E-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred CCCCeEEEEecCCEEEEEEcccCCCCC-c-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 46689999999999999998633211 1 222 223568889999888766666666777766543
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.97 E-value=0.73 Score=48.80 Aligned_cols=224 Identities=14% Similarity=0.123 Sum_probs=116.1
Q ss_pred CCeEEEEEccCceeEE-EecCCCCCeEEEEEcCCCCcEEEEEeC----CC-------eEEEEeccCccee--eeeccccC
Q 001367 821 GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD----DS-------TILIYNARSSEVI--SKLEGHSK 886 (1091)
Q Consensus 821 dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~la~g~~----dg-------~i~iwd~~~~~~~--~~l~~h~~ 886 (1091)
...+..||..+.+-.. .+..+.......+... ++.+++.|+. ++ .+..||..+.+-. ..+.....
T Consensus 23 G~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 101 (318)
T 2woz_A 23 DTAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARC 101 (318)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBC
T ss_pred ccceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccc
Confidence 3458899988776433 2222222233333444 6778888873 12 2778888776532 22222111
Q ss_pred CeEEEEECCCCCEEEEEeCC-------CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-e-c--
Q 001367 887 RVTGLVFSDALNILVSSGGD-------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E-- 955 (1091)
Q Consensus 887 ~V~~l~~spdg~~las~s~D-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~-d-- 955 (1091)
.-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+ +... ....+...++++.+.| . +
T Consensus 102 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r------~~~~~~~~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 102 LFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL--PIKV------YGHNVISHNGMIYCLGGKTDDK 171 (318)
T ss_dssp SCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC--SSCE------ESCEEEEETTEEEEECCEESSS
T ss_pred ccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC--CCcc------cccEEEEECCEEEEEcCCCCCC
Confidence 1222223 67777778764 2478888887653332111 1111 1112222566666663 2 1
Q ss_pred ---CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceEEEeecccccCCCCcc
Q 001367 956 ---THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSC 1027 (1091)
Q Consensus 956 ---~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 1027 (1091)
..+.+||..+.+....-..... .....+..-+++.++.|+.+ ..+.+||+.+.+.... ..++...
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~r-- 244 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTP-RSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM----TEFPQER-- 244 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC----CCCSSCC--
T ss_pred CccceEEEEcCCCCEEEECCCCCCC-cccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC----CCCCCcc--
Confidence 3599999988764432111111 11111223467777877754 3477899888765432 1222221
Q ss_pred cccceeEEEeCCCCCCeEEEEecC--------------CcEEEEecCCCCCCcccC
Q 001367 1028 LHVYPHAIAAHPLKPTQFAVGLTN--------------GEVYVIEPNEPGDTWAVL 1069 (1091)
Q Consensus 1028 ~~v~~~~~~~~p~d~~~l~~g~~d--------------g~v~~w~~~~~~~~~~~~ 1069 (1091)
....++.. ++.+++.|+.+ ..+.+||+.. .+|...
T Consensus 245 --~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~--~~W~~~ 293 (318)
T 2woz_A 245 --SSISLVSL---AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK--KEWAGM 293 (318)
T ss_dssp --BSCEEEEE---TTEEEEECCBCCBC----CCBCCBCCCEEEEETTT--TEEEEE
T ss_pred --cceEEEEE---CCEEEEECCeeccCCCCceeccceeeeEEEEeCCC--CEehhh
Confidence 11111222 36788888865 3577788754 468776
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.05 Score=57.56 Aligned_cols=201 Identities=9% Similarity=0.030 Sum_probs=108.5
Q ss_pred cEEEEEeCCCeEEEEeccCcceeeeeccc-cCCeEEEEE--CC-CCCEEEEE-eCCCcEEEEEcCCCceeeeeeeeccCC
Q 001367 856 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG 930 (1091)
Q Consensus 856 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h-~~~V~~l~~--sp-dg~~las~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 930 (1091)
.++++++.||.|+-.|..+|+.+.++... ..++....- .+ ++..++.. +.||.|..++..+|...-...+..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999998887654 122222110 01 33334333 589999999988875332111111111
Q ss_pred CcCCCCCceE---E------EEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccC------EEEEEEe-----eCCC
Q 001367 931 VMTLAPSETH---I------QFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----CDCR 990 (1091)
Q Consensus 931 ~~~~~~~i~~---l------~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~------v~~v~fs-----~dg~ 990 (1091)
.. ++.. . ..+.+|..++.+.++++...|+.+|+.+..+..+.... ..+.... ..+.
T Consensus 91 ~S----P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 TS----PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp TC----SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred cc----ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 00 1110 0 01245555555889999999999999998865442111 1111111 1235
Q ss_pred EEEEEEcCCcEEEEeCCCCceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcEEEEecCCCCCCc
Q 001367 991 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1066 (1091)
Q Consensus 991 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v~~w~~~~~~~~~ 1066 (1091)
.|+.+..+..+.+.+ .+|+ +-......+.+.... ..+.. ....+. |+.. ++++.||.|..+|...+...|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~-~~~~~-~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD-VPLAL-QNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT-HHHHT-TCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccc-ccccc-cccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777777777766 4453 222211122221100 00000 000111 3444 568899999999998888889
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.68 E-value=2.7 Score=44.52 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=70.6
Q ss_pred heeeecccCCCCcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEE
Q 001367 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 404 (1091)
Q Consensus 325 ~~~~~l~~h~~~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 404 (1091)
..+.++...-...+.++|.|||+ ++++-...|.|++++..+++......+ . .+..........|+|
T Consensus 22 ~~~~~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~------------~-~v~~~g~~GllGia~ 87 (347)
T 3das_A 22 KVLRTVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV------------P-GVSPSGEGGLLGIAL 87 (347)
T ss_dssp EEEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC------------T-TCCCBTTBSEEEEEE
T ss_pred ceeEEeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc------------C-ceeecCCCCceeeEe
Confidence 34455555555899999999998 667665579999998766653211000 0 012234567899999
Q ss_pred CCC---CCEEEEE-E--CCCEEEEEEeeCCc----c---cceeE-EEe-ccccCeeEEEEcCCCCceEEEEee
Q 001367 405 SPD---GSLLGVA-Y--SKHIVQLYAYHGGS----D---ARQQL-EID-AHVGNVNDLAFSAPCKQISVITCG 462 (1091)
Q Consensus 405 spd---g~~las~-~--~d~~i~iwd~~~~~----~---~~~~~-~~~-~h~~~v~~~~~s~d~~~~~l~s~~ 462 (1091)
+|| +.+|.+. + .++.|.-|.+..+. . .+.+. .+. +....-..|+|.|||. +.++.+
T Consensus 88 ~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 88 SPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp CTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred ccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 996 3444433 2 34556666665421 1 11111 122 1122356799999997 555543
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.66 E-value=0.61 Score=49.44 Aligned_cols=224 Identities=10% Similarity=0.005 Sum_probs=106.3
Q ss_pred EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeC----CC-------cEEEEeCCCCceeEE--ecCCC
Q 001367 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG 485 (1091)
Q Consensus 419 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~----d~-------~i~iwd~~~~~~~~~--~~~~~ 485 (1091)
.+..||..+++-.. ..+..........+...+++ +++.|+. ++ .+.+||..+.+-... +....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37888888765322 12221112222333345566 6666662 11 177888877654321 11111
Q ss_pred cceEEEeecccCCceEEEEEecC-------CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCC--CceE
Q 001367 486 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF 556 (1091)
Q Consensus 486 ~~v~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~--~~~~ 556 (1091)
.....+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++.++.... ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11111222 45677777754 24677777654322221111111111122246666666654211 1345
Q ss_pred EEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCCCCCCCCceEEEc
Q 001367 557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631 (1091)
Q Consensus 557 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 631 (1091)
+.+||+.+.+-...-.... ......++.+ ++..++.|+.+ ..+.+||+.+.+....-..... .....+..
T Consensus 177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~ 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred EEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence 8999998876443322111 1112222222 45666666532 3577899888765443222211 11212223
Q ss_pred cCCCEEEEEECC--------------CeEEEEECCCCC
Q 001367 632 KNGTLLAVIANE--------------NRIKILETPESN 655 (1091)
Q Consensus 632 ~~~~~l~~~~~d--------------g~i~iwd~~~~~ 655 (1091)
-++++++.|+.+ ..+.+||..+.+
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 356677776643 357778877653
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.51 E-value=0.49 Score=58.83 Aligned_cols=236 Identities=11% Similarity=0.082 Sum_probs=134.1
Q ss_pred EEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEECCCEE
Q 001367 341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420 (1091)
Q Consensus 341 ~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i 420 (1091)
-.+|..+ ++|.-. ..++.|+|+++...+.... ...+|..=.|-.+...-+++ +..|
T Consensus 72 IMnP~~~-iiALra-g~~lQiFnl~~k~klks~~--------------------~~e~VvfWkWis~~~l~lVT--~~aV 127 (1630)
T 1xi4_A 72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLNTVALVT--DNAV 127 (1630)
T ss_pred ccCCCcc-eEEEec-CCeEEEeehHHhhhhcccc--------------------cCCCceEEEecCCCeeEEEc--CCeE
Confidence 3466666 555543 5889999999988776532 22467766776555443333 4569
Q ss_pred EEEEeeCCcccceeEEEecc----ccCeeEEEEcCCCCceEEEEee------CCCcEEEEeCCCCceeEEecCCCcceEE
Q 001367 421 QLYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVYS 490 (1091)
Q Consensus 421 ~iwd~~~~~~~~~~~~~~~h----~~~v~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 490 (1091)
.-|++.+...... .+..| ...|..-.-+++.+++ +++|= -.|.+.+|..+.+ ..+.+.||.+....
T Consensus 128 yHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~ 203 (1630)
T 1xi4_A 128 YHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQ 203 (1630)
T ss_pred EEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhhe
Confidence 9999975432221 22233 3457777788999863 33332 3578889986644 34566777665555
Q ss_pred EeecccCCceEEEE-Eec---CCeEEEEecCCC---Cceee-----e-cC---CCCcEEEEEEcCCCCEEEEEecCCCCc
Q 001367 491 LCPHAKENIHFIFS-ISV---DGKIKAWLYDSL---GARVD-----Y-DA---PGLGCTRMAYSANGRRLFSCGTSKEGE 554 (1091)
Q Consensus 491 ~~~~~~~~~~~l~s-~~~---dg~i~iwd~~~~---~~~~~-----~-~~---~~~~i~~~~~s~d~~~l~~~~~~~~~~ 554 (1091)
+.+...+....+++ +.. .+.++|-++... ...+. + .. ...-..++..++.-..+...+. .
T Consensus 204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~ 279 (1630)
T 1xi4_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 279 (1630)
T ss_pred eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----C
Confidence 44432222222333 222 268888888653 11110 1 11 1122346667776666666654 6
Q ss_pred eEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 001367 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611 (1091)
Q Consensus 555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~~~ 611 (1091)
|.+.++|+.++.++..-+-.. ..|...+......-+++....|.|.--.++...
T Consensus 280 G~~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred ceEEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 789999999998875544333 455544444444445555555555554444433
No 340
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.32 E-value=0.51 Score=49.78 Aligned_cols=187 Identities=10% Similarity=-0.001 Sum_probs=98.6
Q ss_pred CCCEEEEEeC----------CeEEEEEccCceeEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEeccC
Q 001367 812 NDAYLFSASG----------GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARS 874 (1091)
Q Consensus 812 dg~~la~~~d----------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~i~iwd~~~ 874 (1091)
++++++.|+. ..+.+||..+.+-... +.........+.+ ++++++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCC
Confidence 5666665542 3588899877653322 2212122222333 56777777644 3688999887
Q ss_pred ccee--eeeccccCCeEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCC
Q 001367 875 SEVI--SKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 947 (1091)
Q Consensus 875 ~~~~--~~l~~h~~~V~~l~~spdg~~las~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg 947 (1091)
.+-. ..+......-.++.+ ++++++.|+.+ ..+.+||+.+.+-.....+.. ... ....+.+ ++
T Consensus 147 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~----~~~~~~~--~~ 216 (308)
T 1zgk_A 147 DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT--IRS----GAGVCVL--HN 216 (308)
T ss_dssp TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS--CCB----SCEEEEE--TT
T ss_pred CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC--ccc----cceEEEE--CC
Confidence 6432 222222222222333 67777777765 458899998865333211111 111 1122222 66
Q ss_pred CEEEEE-ec-----CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcC-----CcEEEEeCCCCceE
Q 001367 948 TRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 1012 (1091)
Q Consensus 948 ~~la~~-~d-----~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~d-----g~v~iwd~~~~~~~ 1012 (1091)
++++.| .+ ..+.+||..+.+.......... .....+..-+++.++.|+.+ ..+.+||+.+.+..
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR-RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC-ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 666664 32 4699999988765432111111 11111222367777777754 35788888887655
No 341
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.20 E-value=0.014 Score=46.08 Aligned_cols=55 Identities=18% Similarity=0.376 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhcc
Q 001367 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSS 59 (1091)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~l~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1091)
++|+.+-|++||...||.+++.+|.+|.+++.+ ...-..-+|.=+|..++.+-.+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 579999999999999999999999999998764 2223455666677777666443
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.13 E-value=1.1 Score=49.84 Aligned_cols=161 Identities=12% Similarity=0.113 Sum_probs=89.3
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce--eeeecc------ccCCeEEEEECCC----CCEEEEEeC-----
Q 001367 843 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEG------HSKRVTGLVFSDA----LNILVSSGG----- 905 (1091)
Q Consensus 843 ~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~--~~~l~~------h~~~V~~l~~spd----g~~las~s~----- 905 (1091)
.....|+|.| +|+++++-...+.|++++..+++. +..+.. ..+....|+|+|| +.+.++-+.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 888777554445799888665543 222221 2356779999995 444444432
Q ss_pred -------CCcEEEEEcCCC--ceee-eeeee-ccCCCcCCCCCceEEEEcCCCCEEEEEec-------------------
Q 001367 906 -------DAQIFVWDVDGW--GIQT-CRSLQ-TPDGVMTLAPSETHIQFHKDQTRFLLVHE------------------- 955 (1091)
Q Consensus 906 -------Dg~i~vwd~~~~--~~~~-~~~~~-~~~~~~~~~~~i~~l~fs~dg~~la~~~d------------------- 955 (1091)
...|.-+++..+ .... ...+. ...+.. .....++|.|||.+.++..|
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~---H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p 182 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD---HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTP 182 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS---CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC---CCCCeEeECCCCeEEEEECCCCCCCcccccccccccccc
Confidence 234666665432 1111 12222 122111 14689999999998887322
Q ss_pred --------------CeEEEEEcCCcc-----------eeeeeecCCccCEEEEEEeeCCCEEEEE-EcCCcEEEEeCCCC
Q 001367 956 --------------THLAIYEAEELT-----------CLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1009 (1091)
Q Consensus 956 --------------~~i~vwd~~~~~-----------~~~~~~~~h~~~v~~v~fs~dg~~l~t~-~~dg~v~iwd~~~~ 1009 (1091)
+.|.-++.. +. ....+..+| .....++|.++|++.++- +.++.-.|.-+..|
T Consensus 183 ~~~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G 260 (454)
T 1cru_A 183 TQQELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG 260 (454)
T ss_dssp CHHHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred ccccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence 234333432 32 223344454 457789999998865543 23444445444443
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.12 E-value=1.8 Score=48.12 Aligned_cols=195 Identities=13% Similarity=0.136 Sum_probs=116.7
Q ss_pred CCCCEEEEEe--CCeEEEEEccCceeEEEecCC-CCCeEEEEEc--CCCCcEEEEEeC-------CCeE---------EE
Q 001367 811 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAFN--PHDNNVIAIGMD-------DSTI---------LI 869 (1091)
Q Consensus 811 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s--~~~~~~la~g~~-------dg~i---------~i 869 (1091)
.||++|..-. +..|...++...++-+.+..+ ...+..+.|- | +..+++.+++ ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 3789999887 577888999988887666543 4578888886 6 5566666653 2221 11
Q ss_pred E---eccCcceeeeeccccCCeEEEEECCCCCEEEEEeCCC---------------cEEEEEcCC-------Cceeeee-
Q 001367 870 Y---NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDVDG-------WGIQTCR- 923 (1091)
Q Consensus 870 w---d~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg---------------~i~vwd~~~-------~~~~~~~- 923 (1091)
| |..+.+...++.- .+..-.+...++|++.++.+.+. .+.++|+.. ++.....
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1 2222222222111 12333456678888888776542 266666532 1111000
Q ss_pred -eeeccCCCc------------CCCCCceEEEEcCCCCEEEEE--ecCeEEEEEcCCcce-------------eeeeecC
Q 001367 924 -SLQTPDGVM------------TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI 975 (1091)
Q Consensus 924 -~~~~~~~~~------------~~~~~i~~l~fs~dg~~la~~--~d~~i~vwd~~~~~~-------------~~~~~~~ 975 (1091)
-+....+.. +.+.....+.++|||++++++ -+.++.|+|++.... ..+..
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 011111111 111345678999999999995 467899999885322 11111
Q ss_pred CccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCC
Q 001367 976 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1009 (1091)
Q Consensus 976 h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~ 1009 (1091)
-.......+|.++|....|---|..|.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 1456788999999965566668999999998764
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.97 E-value=1.7 Score=46.71 Aligned_cols=141 Identities=8% Similarity=-0.002 Sum_probs=66.7
Q ss_pred CeEEEEeccCcce--eeeeccccCCeEEEEECCCCCEEEEEeC------CCcEEEEEc--CCCceeeeeeeeccCCCcCC
Q 001367 865 STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGG------DAQIFVWDV--DGWGIQTCRSLQTPDGVMTL 934 (1091)
Q Consensus 865 g~i~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~las~s~------Dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~ 934 (1091)
..+.+||..+.+- +..+......-.+++.. ++++++.|+. ...+.++|+ .+..-.....+.....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~---- 242 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG---- 242 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC----
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc----
Confidence 4789999987643 23332111110222222 5667777664 235777877 4433221111111111
Q ss_pred CCCceEEEEcCCCCEEEEE-ec----------------------CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCE
Q 001367 935 APSETHIQFHKDQTRFLLV-HE----------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 991 (1091)
Q Consensus 935 ~~~i~~l~fs~dg~~la~~-~d----------------------~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~ 991 (1091)
.....+...++++++.| .+ ..+.+||..+.+....-.... .+....+...+++.
T Consensus 243 --~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i 319 (357)
T 2uvk_A 243 --VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ-GRAYGVSLPWNNSL 319 (357)
T ss_dssp --CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS-CCBSSEEEEETTEE
T ss_pred --cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC-CcccceeEEeCCEE
Confidence 11222334466666663 21 257899988766443211111 11112234467888
Q ss_pred EEEEEcCC------cEEEEeCCCCceEE
Q 001367 992 VFTSFVDG------TLSIHEASNLEVQC 1013 (1091)
Q Consensus 992 l~t~~~dg------~v~iwd~~~~~~~~ 1013 (1091)
++.|+.++ .|.++++++++...
T Consensus 320 ~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 320 LIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred EEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 88888653 35566888877663
No 345
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.92 E-value=1.8 Score=45.14 Aligned_cols=180 Identities=9% Similarity=0.060 Sum_probs=102.2
Q ss_pred cCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecccCCceEEEEEecC--------------CeEEEEe
Q 001367 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD--------------GKIKAWL 515 (1091)
Q Consensus 450 s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------------g~i~iwd 515 (1091)
+.+|.++++.....++.|...+.. |.....+... .+..+ ..++.+|+-+... ..|+..+
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~--~~~~i----~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSND--TAMYI----NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEE--EEEEE----EECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccCC--ceeeE----EEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 456775444333445667777744 3334444321 12222 2244555555432 3577777
Q ss_pred cCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEE
Q 001367 516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 595 (1091)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 595 (1091)
++..+........ +..+++++++|+....+.++...|+..++..... ..+..+. + ..++++++.|+-
T Consensus 95 ~dg~~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~-----~--~~~~~~g~~iy~ 161 (302)
T 3s25_A 95 RNGHGSTVLDPDP-----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHY-----L--FTCNTSDRYFYY 161 (302)
T ss_dssp TTSCCCEEEECSC-----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSC-----C--CCSEEETTEEEE
T ss_pred CCCCcceEeecCC-----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCC-----c--eEeeEECCEEEE
Confidence 7666543333221 2367889999987752234567788888875543 3343332 1 346778888887
Q ss_pred EeC-CCeEEEEECCCCeeEEEEeCCCCCCCCceEEEccCCCEEEEEECC--CeEEEEECCCCC
Q 001367 596 AGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE--NRIKILETPESN 655 (1091)
Q Consensus 596 ~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d--g~i~iwd~~~~~ 655 (1091)
.+. ...|+.-++..+.....+.. . ....+.|++.+|+-.... ..|..-++....
T Consensus 162 t~~g~~~Iy~~~l~g~~~~~l~~~--~----~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 162 NNPKNGQLYRYDTASQSEALFYDC--N----CYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp ECTTTCCEEEEETTTTEEEEEECS--C----EEEEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred EeCCCceEEEEECCCCCEEEEeCC--C----ccceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 665 67888889887765444331 1 123466888888876654 356666665543
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.26 E-value=0.1 Score=55.23 Aligned_cols=195 Identities=10% Similarity=0.021 Sum_probs=103.8
Q ss_pred EEEEeeCCCcEEEEeCCCCceeEEecCC-CcceEEEeecc-cCCceEEEEE-ecCCeEEEEecCCCCceeeecCC----C
Q 001367 457 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHA-KENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G 529 (1091)
Q Consensus 457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~----~ 529 (1091)
+++.++.||.|.-.|..+|+.+.++... ..++....-.. ..++..++.. +.||.+..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5788999999999999999999998654 12332221101 1133334343 68999999988766443322211 1
Q ss_pred CcEEE---EEE-----cCCCCEEEEEecCCCCceEEEEEecCCceeeEEEecccccc----cceEEEEEc-----CCCCE
Q 001367 530 LGCTR---MAY-----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH----NSVSVVHFD-----TAKDQ 592 (1091)
Q Consensus 530 ~~i~~---~~~-----s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----~~v~~v~~~-----~~~~~ 592 (1091)
.++.. ..+ +..+..+++++. ++.++..|+.+|+.+..+....... ....|.... ..+..
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 11111 000 013445666654 7789999999999998887532100 000111110 12356
Q ss_pred EEEEeCCCeEEEEECCCCeeEEE-----EeCCCCCCCC-ceEEEccCCCEEEEEECCCeEEEEECCCCCeec
Q 001367 593 ILAAGDDHVIKIWDMNKVQLLTT-----IDAGGGLPEN-PRICFNKNGTLLAVIANENRIKILETPESNSVD 658 (1091)
Q Consensus 593 l~~~s~dg~i~iwd~~~~~~~~~-----~~~~~~~~~v-~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 658 (1091)
++.+..+..+.+.+ ++|+ +.. .........+ ..-..+.|+.+ ++++.||.|..+|..++..+.
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777666666665 3343 111 1100000000 00011234565 557889999999998887654
No 347
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.16 E-value=3.7 Score=45.70 Aligned_cols=110 Identities=14% Similarity=0.137 Sum_probs=63.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCc--CCCCCceEEEEcCC---CCEEEEE--e----
Q 001367 886 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKD---QTRFLLV--H---- 954 (1091)
Q Consensus 886 ~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~fs~d---g~~la~~--~---- 954 (1091)
...++|+|.|||+++++-...+.|++++..++.... ......... .....+..++|+|| +.+|.++ .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 456799999999988865444568888765544322 111111110 01235779999996 5555542 2
Q ss_pred --------cCeEEEEEcCCc-------ceeee-eecCCccCEEEEEEeeCCCEEEEEEc
Q 001367 955 --------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV 997 (1091)
Q Consensus 955 --------d~~i~vwd~~~~-------~~~~~-~~~~h~~~v~~v~fs~dg~~l~t~~~ 997 (1091)
...|.-|+...+ +.+.. +..........|+|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666655322 11221 11122345788999999998777654
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.00 E-value=9.6 Score=39.51 Aligned_cols=182 Identities=10% Similarity=0.060 Sum_probs=99.3
Q ss_pred EEEEcCCCceEEEEEcCC-------------CcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEEC
Q 001367 339 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405 (1091)
Q Consensus 339 ~v~fspdg~~llasg~~d-------------g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 405 (1091)
+--++++|.+|..+...+ ..|+..++..++... +.. .. +..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--DP--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--SC--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--CC--ccEEE
Confidence 345688998776666543 356666666654332 111 11 23678
Q ss_pred CCCCEEEEEE--CCC--EEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe
Q 001367 406 PDGSLLGVAY--SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 481 (1091)
Q Consensus 406 pdg~~las~~--~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 481 (1091)
+++++|+-.. .++ .|..-++.+.. .+ .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 344 44444554332 22 3444432 457888985 2334334678888887766544333
Q ss_pred cCCCcceEEEeecccCCceEEEEEecC--CeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE
Q 001367 482 EGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559 (1091)
Q Consensus 482 ~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 559 (1091)
.+ ... ..+.| ++.+|+-.... ..|..-+++...... +.. ..+ ..++|++++|..+.... ...|..
T Consensus 184 ~~---~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPVV-LTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV 250 (302)
T ss_dssp CS---CEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCEE-CSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred CC---Ccc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeEE-EeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence 32 222 22333 44455555433 245555555544332 222 223 34888999998764322 356777
Q ss_pred EecCCce
Q 001367 560 WNESEGA 566 (1091)
Q Consensus 560 wd~~~~~ 566 (1091)
.++....
T Consensus 251 ~~~DG~~ 257 (302)
T 3s25_A 251 VKNDGTG 257 (302)
T ss_dssp EETTSCC
T ss_pred EECCCCc
Confidence 7776544
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.84 E-value=4.5 Score=48.03 Aligned_cols=196 Identities=11% Similarity=0.109 Sum_probs=106.7
Q ss_pred CCCCEEEEEeC-----CeEEEEEccCceeEEEe--------cCCCCCeEEEEEcCCCCcEEEEEeCCC------eEEEEe
Q 001367 811 KNDAYLFSASG-----GVISLYIVMTFKTILTI--------MPPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN 871 (1091)
Q Consensus 811 ~dg~~la~~~d-----g~i~iwd~~~~~~~~~~--------~~~~~~i~~l~~s~~~~~~la~g~~dg------~i~iwd 871 (1091)
.++..++.|+. +.+.+||..+.+-...- ......-..+.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 56666666652 45889998876433222 11112234444543 567778787543 588899
Q ss_pred ccCcce--eeeeccccCCeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCceeeeeeee-ccCCCcCCCCCceEEEEcCC
Q 001367 872 ARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD 946 (1091)
Q Consensus 872 ~~~~~~--~~~l~~h~~~V~~l~~spdg~~las~s~Dg--~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~fs~d 946 (1091)
..+.+- +..+......- +++...++++++.||.++ .+.+||..+.......... .+... ....++.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCC
Confidence 887543 22222111111 223324788888888755 6899999886533221100 11111 12334666665
Q ss_pred -CCEEEEE-e--c-----CeEEEEEcCCcce------eeeee-cCCccCEEEEEEeeCCCEEEEEEcC--------CcEE
Q 001367 947 -QTRFLLV-H--E-----THLAIYEAEELTC------LKQWF-PISSVPISQATFSCDCRMVFTSFVD--------GTLS 1002 (1091)
Q Consensus 947 -g~~la~~-~--d-----~~i~vwd~~~~~~------~~~~~-~~h~~~v~~v~fs~dg~~l~t~~~d--------g~v~ 1002 (1091)
+++++.| . + +.+.+||..+... ..... ......-.+++...+++.++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5566664 2 2 3589999988772 11111 0111111123334447788888743 4599
Q ss_pred EEeCCCCceE
Q 001367 1003 IHEASNLEVQ 1012 (1091)
Q Consensus 1003 iwd~~~~~~~ 1012 (1091)
+||+.+....
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999998766
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.32 E-value=16 Score=40.45 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=35.6
Q ss_pred ccEEEEEECCCCC-EEEEEECCCEEEEEEeeCCcccceeEEEe-----c----cccCeeEEEEcCC
Q 001367 397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID-----A----HVGNVNDLAFSAP 452 (1091)
Q Consensus 397 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~-----~----h~~~v~~~~~s~d 452 (1091)
.....|+|.|||. .|.++...|.|++++.........+..+. + .......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4667899999996 55566788999999754321111111111 1 1356788999997
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.12 E-value=15 Score=39.75 Aligned_cols=260 Identities=11% Similarity=0.059 Sum_probs=122.4
Q ss_pred CCCeeEEEecC--CCCEEEEEeCC----eEEEEEccCc---eeEEE---ecC--------CCCCeEEEEEcCCC-CcEEE
Q 001367 801 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTF---KTILT---IMP--------PSPTATSLAFNPHD-NNVIA 859 (1091)
Q Consensus 801 ~~~v~~l~~s~--dg~~la~~~dg----~i~iwd~~~~---~~~~~---~~~--------~~~~i~~l~~s~~~-~~~la 859 (1091)
...|.++++.| ++.+.+.+..| .|... ...+ +.+.. +.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 66676666554 34332 1222 22221 111 11257789998733 44555
Q ss_pred EEeCCCeEEEEeccCcc---eeeeecc----------------ccCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCce
Q 001367 860 IGMDDSTILIYNARSSE---VISKLEG----------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGI 919 (1091)
Q Consensus 860 ~g~~dg~i~iwd~~~~~---~~~~l~~----------------h~~~V~~l~~spd-g~~las~s~Dg~i~vwd~~~~~~ 919 (1091)
++...+.|...+ +.|+ .+..+.. ....|.+|.+.|. ...|..+..++.|...+-....
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~t- 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTD- 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSS-
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCC-
Confidence 566666555443 2222 2211110 1235789999873 3344444444434433222211
Q ss_pred eeeeeeec-cCC-CcC-----CCCCceEEEEcCC-CCEEEEEecCeEEEEEcCCcceeeeeecCC-c---cCEEEEEEee
Q 001367 920 QTCRSLQT-PDG-VMT-----LAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC 987 (1091)
Q Consensus 920 ~~~~~~~~-~~~-~~~-----~~~~i~~l~fs~d-g~~la~~~d~~i~vwd~~~~~~~~~~~~~h-~---~~v~~v~fs~ 987 (1091)
...+.. ... ... ....+.++++.|+ ...|.++..+.|...+- .++.-..+...- . ..+..+++.|
T Consensus 211 --W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 211 --WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp --CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred --ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 111111 000 000 0024788999986 35566665666655542 233222211111 1 3456788876
Q ss_pred C-CCEEEEEEc-----------CCcEEEEeCCC-CceEEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecCCcE
Q 001367 988 D-CRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1054 (1091)
Q Consensus 988 d-g~~l~t~~~-----------dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~dg~v 1054 (1091)
. ...|.++.. ++...+|.... |+.-..+. ..++....-..+....++++|.++..|.+++.++.
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~- 364 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGE- 364 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSC-
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCe-
Confidence 3 333444432 23345565444 33322222 12232100011122346788865566777766665
Q ss_pred EEEecCCCCCCcccCC
Q 001367 1055 YVIEPNEPGDTWAVLP 1070 (1091)
Q Consensus 1055 ~~w~~~~~~~~~~~~~ 1070 (1091)
+|.-.+.+.+|....
T Consensus 365 -l~~S~D~G~tW~~~~ 379 (394)
T 3b7f_A 365 -IWASADEGEHWQCIA 379 (394)
T ss_dssp -EEEESSTTSBCEEEE
T ss_pred -EEEECCCCCCceEcc
Confidence 556667778897653
No 352
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.98 E-value=3.3 Score=49.18 Aligned_cols=199 Identities=14% Similarity=0.071 Sum_probs=106.4
Q ss_pred CCcEEEEEeCC----CeEEEEeccCcceeeee--------ccccCCeEEEEECCCCCEEEEEeCCC------cEEEEEcC
Q 001367 854 DNNVIAIGMDD----STILIYNARSSEVISKL--------EGHSKRVTGLVFSDALNILVSSGGDA------QIFVWDVD 915 (1091)
Q Consensus 854 ~~~~la~g~~d----g~i~iwd~~~~~~~~~l--------~~h~~~V~~l~~spdg~~las~s~Dg------~i~vwd~~ 915 (1091)
++.+++.|+.+ ..+.+||..+++-...- ......-..+.+..++++++.||.++ .+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 56677777753 36888888876533211 11111222333333778888887543 47889998
Q ss_pred CCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEE-ecC--eEEEEEcCCcceeeeee----cCCccCEEEEEEeeC
Q 001367 916 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET--HLAIYEAEELTCLKQWF----PISSVPISQATFSCD 988 (1091)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~-~d~--~i~vwd~~~~~~~~~~~----~~h~~~v~~v~fs~d 988 (1091)
+.+......+... . .-.+++.-.++++++.| .++ .+.+||..+......-. +.....-..+.+..+
T Consensus 477 t~~W~~~~~~p~~--R-----~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 477 TREWSMIKSLSHT--R-----FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTEEEECCCCSBC--C-----BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCcEEECCCCCCC--c-----ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 8653322111111 1 12234443578887774 322 79999998876543321 111112233455554
Q ss_pred -CCEEEEEEc--C-----CcEEEEeCCCCce-----EEEeecccccCCCCcccccceeEEEeCCCCCCeEEEEecC----
Q 001367 989 -CRMVFTSFV--D-----GTLSIHEASNLEV-----QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN---- 1051 (1091)
Q Consensus 989 -g~~l~t~~~--d-----g~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~g~~d---- 1051 (1091)
++.++.|+. + ..+.+||+.+... -..+......+.. ...++... ++.+++.||.+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~------~~~~~~~~--~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY------GSQIKYIT--PRKLLIVGGTSPSGL 621 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB------SCEEEEEE--TTEEEEECCBCSSCC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc------cceEEEeC--CCEEEEECCccCCCC
Confidence 667777775 2 3588999998872 1112111111111 11122222 26788888853
Q ss_pred ----CcEEEEecCCCCCCcccC
Q 001367 1052 ----GEVYVIEPNEPGDTWAVL 1069 (1091)
Q Consensus 1052 ----g~v~~w~~~~~~~~~~~~ 1069 (1091)
..+.++|+... +|...
T Consensus 622 ~~~~~~v~~yd~~t~--~W~~~ 641 (695)
T 2zwa_A 622 FDRTNSIISLDPLSE--TLTSI 641 (695)
T ss_dssp CCTTTSEEEEETTTT--EEEEC
T ss_pred CCCCCeEEEEECCCC--eEEEe
Confidence 46889998654 58744
No 353
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=91.01 E-value=30 Score=40.82 Aligned_cols=246 Identities=8% Similarity=0.010 Sum_probs=125.4
Q ss_pred EEEE-EcCCCceEEEEEcCCC----cEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCC-----ccEEEEEECCC
Q 001367 338 MSMD-FHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-----VSVNRVVWSPD 407 (1091)
Q Consensus 338 ~~v~-fspdg~~llasg~~dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~spd 407 (1091)
..+. ++||+++++++-|..| .++++|+.+++.+.. .|. . .... .....++|..+
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~--------------~~k~~~~~~~~~~~~~W~d~ 195 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-P--------------ITNSGKLLEGKFTYPTWINK 195 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-C--------------BCTTCCBCCEETCCEEEEET
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-c--------------ccccccccccccceeeEECC
Confidence 3345 8999997766655544 599999999987642 110 0 0000 01133467633
Q ss_pred CCEEEEE----------ECCCEEEEEEeeCCcccceeEEEeccccCe-eEEEEcCCCCce---EEEEeeCC---CcEEEE
Q 001367 408 GSLLGVA----------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQI---SVITCGDD---KTIKVW 470 (1091)
Q Consensus 408 g~~las~----------~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~d~~~~---~l~s~~~d---~~i~iw 470 (1091)
+..+++. +....|+.|.+.+...-. ...+.+....+ .....+++++.. .+++.+.+ ..+.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 274 (711)
T 4hvt_A 196 DTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYIL 274 (711)
T ss_dssp TEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEE
T ss_pred CEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEE
Confidence 3333331 112468888776653221 11344433332 345567777742 35554422 345666
Q ss_pred eCCC--CceeEEecCCCcceEEEeecccCCceEEEEE----------ecCCeEEEEecCCCC-------ceee-e-cCCC
Q 001367 471 DAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSLG-------ARVD-Y-DAPG 529 (1091)
Q Consensus 471 d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~iwd~~~~~-------~~~~-~-~~~~ 529 (1091)
|... ++ +..+....... +.. ..++.+++.. ...+.|...++.... .... + ....
T Consensus 275 ~~~~~~~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (711)
T 4hvt_A 275 DTKYKNLK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN 349 (711)
T ss_dssp ECSSSSCE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT
T ss_pred cCCCCCCc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC
Confidence 6543 33 22332221111 111 1133444422 246678888887631 2222 3 2234
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCce-eeEE-EecccccccceEEEEEcCCCCEEEE-Ee---CCCeEE
Q 001367 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIK 603 (1091)
Q Consensus 530 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~-~s---~dg~i~ 603 (1091)
..+..+.+..+ ..+++... ++...+.++++.++. .... +.... ...+......+++..++. .+ .-+.+.
T Consensus 350 ~~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~ 424 (711)
T 4hvt_A 350 EVFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIY 424 (711)
T ss_dssp EEEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEE
T ss_pred CeEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEE
Confidence 46778888876 44444433 446678999987775 2333 32221 135666666677655444 33 346788
Q ss_pred EEECCCCe
Q 001367 604 IWDMNKVQ 611 (1091)
Q Consensus 604 iwd~~~~~ 611 (1091)
.+|+. ++
T Consensus 425 ~~d~~-~~ 431 (711)
T 4hvt_A 425 LWVKT-HE 431 (711)
T ss_dssp EECTT-SC
T ss_pred EEeCC-Cc
Confidence 88876 44
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.12 E-value=18 Score=36.96 Aligned_cols=222 Identities=13% Similarity=0.089 Sum_probs=109.1
Q ss_pred CcEEEEEcCCCceEEEEEcCCCcEEEEEcCCCCceeeeceeEEeccccccceeeeeecCCCccEEEEEECCCCCEEEEEE
Q 001367 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 415 (1091)
Q Consensus 336 ~V~~v~fspdg~~llasg~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 415 (1091)
.|..++....- .++. . ||.|..|-......+.. .......|..++...+-..++ .
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-------------------p~~~~~~i~~ia~G~~hs~~l--~ 79 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-------------------PAATQSGVDAIAAGNYHSLAL--K 79 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-------------------CGGGGSCCCEEEECSSEEEEE--E
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-------------------CccCCCCEEEEEeCCCEEEEE--E
Confidence 56666655442 3344 3 78888887654333321 000123566666654433333 4
Q ss_pred CCCEEEEEEeeCCcccceeEEEeccccCeeEEEEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEecCCCcceEEEeecc
Q 001367 416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495 (1091)
Q Consensus 416 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 495 (1091)
||.|+.|-......+... ..-...|..++...+- .+.-. ||.|..|-......+.........|..++.-
T Consensus 80 -~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G- 149 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG- 149 (282)
T ss_dssp -TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC-
T ss_pred -CCEEEEeeCCCCCCCCCC---cccCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc-
Confidence 888888876543322210 1112367777765442 33334 8999999755422221111123456666542
Q ss_pred cCCceEEEEEecCCeEEEEecCCCCceeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEEEecCCceeeEEEeccc
Q 001367 496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 575 (1091)
Q Consensus 496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 575 (1091)
....++ -. ||.|..|-................|..++...+...++ . ++.++.|-......+..-..
T Consensus 150 --~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~p~~-- 216 (282)
T 3qhy_B 150 --VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTVPTE-- 216 (282)
T ss_dssp --SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCCCGG--
T ss_pred --cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCCCcc--
Confidence 222333 34 79999997655433322111123465555443332222 2 44588886543211111001
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001367 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 609 (1091)
Q Consensus 576 ~~~~~v~~v~~~~~~~~l~~~s~dg~i~iwd~~~ 609 (1091)
....|..++.... +.++-. ||.|+.|-...
T Consensus 217 -~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 217 -ALSGVSAIASGEW--YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp -GGSSCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred -cCCCceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence 1235666665543 333334 89999996554
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.80 E-value=19 Score=36.77 Aligned_cols=183 Identities=10% Similarity=0.006 Sum_probs=98.3
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeec
Q 001367 803 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 882 (1091)
Q Consensus 803 ~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~ 882 (1091)
.|..++...+...++ .+|.|..|-......+.....-...|..++... . ..+.-. ||.|+.|-....-.+....
T Consensus 64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~-~--hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA-W--ASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET-T--EEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC-C--EEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 566666654433333 388888887553222211111124677887764 2 333345 9999999765432222212
Q ss_pred cccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEE
Q 001367 883 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 962 (1091)
Q Consensus 883 ~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd 962 (1091)
.....|..++...+.. ++ .. ||.|..|-........ .+.... ..|..++...+...++ .++.|+.|=
T Consensus 138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg-----~p~~~~---~~v~~i~~G~~hs~al--~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTT-----VPAEAQ---SGVDDVAGGIFHSLAL--KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTS-----CCGGGG---SSEEEEEECSSEEEEE--ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCC-----CceecC---CCeEEEEecCCEEEEE--ECCeEEEEE
Confidence 2345688887765432 33 33 7999999776522111 010001 2466676655544444 699999997
Q ss_pred cCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC
Q 001367 963 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 963 ~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
....-.+.... .....|..|+...+-. ++. . ||.|+.|=...
T Consensus 205 ~n~~gqlg~p~-~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 205 DNRYKQTTVPT-EALSGVSAIASGEWYS-LAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp CCTTSTTCCCG-GGGSSCCEEEECSSCE-EEE-E-TTEEEEESTTC
T ss_pred CCCCCCCCCCc-ccCCCceEEEcCCCEE-EEE-E-CCEEEEecCCC
Confidence 65433222111 1134566676554433 333 3 99999996554
No 356
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.99 E-value=27 Score=37.28 Aligned_cols=167 Identities=11% Similarity=0.115 Sum_probs=89.6
Q ss_pred cEEEEeCCCC--ceeEEecCC------CcceEEEeec-ccC----CceEE-EEEecCCeEEEEecCCCCceeeec----C
Q 001367 466 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE----NIHFI-FSISVDGKIKAWLYDSLGARVDYD----A 527 (1091)
Q Consensus 466 ~i~iwd~~~~--~~~~~~~~~------~~~v~~~~~~-~~~----~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~----~ 527 (1091)
.|.+||+.++ +.++++.-. ...+..+.+. ..+ ++.++ ++-+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667888888 777666432 3456777776 211 12343 444456779999998776554331 1
Q ss_pred C--------------CCcEEEEEEcCC----CCEEEEEecCCCCceEEEEEecC-----Cc---eeeEEEecccccccce
Q 001367 528 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNES-----EG---AIKRTYQGLQLQHNSV 581 (1091)
Q Consensus 528 ~--------------~~~i~~~~~s~d----~~~l~~~~~~~~~~~~i~iwd~~-----~~---~~~~~~~~~~~~~~~v 581 (1091)
. ...+..++++|+ ++.|.....++ -.+|.+. .. ..++. .+.......-
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-----~~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~ 277 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-----IKVYSVNTKELKQKGGKLNPEL-LGNRGKYNDA 277 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-----SEEEEEEHHHHSSTTCCCCCEE-EEECCTTCCE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-----CcEEEEEHHHhhCcchhhceEE-eeecCCCCCc
Confidence 1 126788999998 77777665432 1222222 11 11111 1222001223
Q ss_pred EEEEEc-CCCCEEEEEeCCCeEEEEECCC-C---eeEEEEeCCCCCCCCceEEEccCCCEEE
Q 001367 582 SVVHFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLA 638 (1091)
Q Consensus 582 ~~v~~~-~~~~~l~~~s~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 638 (1091)
..+++. .+|..+++--+...|..|+..+ . .....+...........+.+.++|.+.+
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv 339 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWF 339 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEE
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEE
Confidence 345665 5666666666888999999876 1 1223332222434455666655554333
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.41 E-value=29 Score=40.87 Aligned_cols=242 Identities=9% Similarity=0.002 Sum_probs=118.4
Q ss_pred EEE-ECCCCCEEEEE-ECC----CEEEEEEeeCCcccceeEEEe-cccc------CeeEEEEcCCCCceEEEEe------
Q 001367 401 RVV-WSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEID-AHVG------NVNDLAFSAPCKQISVITC------ 461 (1091)
Q Consensus 401 ~l~-~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~~~-~h~~------~v~~~~~s~d~~~~~l~s~------ 461 (1091)
.+. ++||+++++.+ |.. ..++++|+.+++.+... +. .-.. ....++|..++. ++++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~ 208 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNE 208 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCCCCC
Confidence 344 88999988876 222 37999999998654321 11 0000 113457874443 34432
Q ss_pred ----eCCCcEEEEeCCCCc--eeEEecCCCcceE-EEeecccCCce---EEEEEecC---CeEEEEecCCCCc-eeeecC
Q 001367 462 ----GDDKTIKVWDAVTGS--RTYSFEGHGAPVY-SLCPHAKENIH---FIFSISVD---GKIKAWLYDSLGA-RVDYDA 527 (1091)
Q Consensus 462 ----~~d~~i~iwd~~~~~--~~~~~~~~~~~v~-~~~~~~~~~~~---~l~s~~~d---g~i~iwd~~~~~~-~~~~~~ 527 (1091)
+....|+.|.+-+.. -...+.+....+. +...+.++... .+++.+.+ ..+.+.+.+.... ...+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 123468888776542 2233443333332 22232333222 34544422 3355555543222 233332
Q ss_pred CCCcEEEEEEcCCCCEEEEEecC------CCCceEEEEEecCCce-------eeEE-EecccccccceEEEEEcCCCCEE
Q 001367 528 PGLGCTRMAYSANGRRLFSCGTS------KEGESFLVEWNESEGA-------IKRT-YQGLQLQHNSVSVVHFDTAKDQI 593 (1091)
Q Consensus 528 ~~~~i~~~~~s~d~~~l~~~~~~------~~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~v~~~~~~~~l 593 (1091)
.... .+..+.++.+++....+ .-..+.|...++.++. ..+. +.... ...+..+.+..+ ..+
T Consensus 289 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~l~ 363 (711)
T 4hvt_A 289 PSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA--NEVFNFISTTKD-RVF 363 (711)
T ss_dssp CTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT--TEEEEEEEECSS-CEE
T ss_pred CCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC--CCeEEEEEEECC-EEE
Confidence 2221 12334455555533211 0125568888877642 1222 32222 356778888865 566
Q ss_pred EEEeCCCe--EEEEECCCCe-eEEE-EeCCCCCCCCceEEEccCCCEE-EEEEC---CCeEEEEECC
Q 001367 594 LAAGDDHV--IKIWDMNKVQ-LLTT-IDAGGGLPENPRICFNKNGTLL-AVIAN---ENRIKILETP 652 (1091)
Q Consensus 594 ~~~s~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~~~~l-~~~~~---dg~i~iwd~~ 652 (1091)
++...++. +.++++.++. .... +..... ..+.....++++..+ ++.+. -+.+..++..
T Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 364 LATYDNVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEETTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 66666664 6677776664 2233 333321 234555566666544 44333 3567777765
No 358
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=85.19 E-value=1.1 Score=40.03 Aligned_cols=56 Identities=14% Similarity=0.307 Sum_probs=44.7
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchh
Q 001367 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE 128 (1091)
Q Consensus 72 ~~~~i~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~ 128 (1091)
++|.|+-+.||||+..|..++|..|+.+.-..+... .+.+++|..+.......+++
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~ 88 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENN 88 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCH
Confidence 899999999999999999999999999866666555 77788888777665554443
No 359
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=83.64 E-value=1.4 Score=40.26 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=46.5
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhc
Q 001367 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHEL 129 (1091)
Q Consensus 72 ~~~~i~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 129 (1091)
++|.|+-+.||||+..|..++|..|+++.-..+.....+.+++|+.+.......+++.
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~ 109 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNET 109 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHH
Confidence 8999999999999999999999999998655555456677888887777655544443
No 360
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=77.52 E-value=0.83 Score=41.21 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=38.4
Q ss_pred hhhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhccccccc
Q 001367 71 KIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIR 125 (1091)
Q Consensus 71 ~~~~~i~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~ 125 (1091)
.++|.|+-+.||||+..| .++|..|+.+.-..+.....+.+++|..+.......
T Consensus 34 ~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~ 87 (148)
T 2j49_A 34 YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIK 87 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHh
Confidence 389999999999999999 999999998854444322344455555555444333
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=76.92 E-value=82 Score=33.53 Aligned_cols=170 Identities=13% Similarity=0.189 Sum_probs=93.6
Q ss_pred CeEEEEEccCc--eeEEEecCC------CCCeEEEEEc---CC---CCcEEEEEe-CCCeEEEEeccCcceeeeec----
Q 001367 822 GVISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE---- 882 (1091)
Q Consensus 822 g~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---~~~~la~g~-~dg~i~iwd~~~~~~~~~l~---- 882 (1091)
-+|.+||+.+. +.++++.-+ ......+++. |. ++.++.... ..+.|.++|+.+++.-+.+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 35778888888 888776532 2356777777 21 133444443 46789999999886543331
Q ss_pred ----------cc----cCCeEEEEECCC----CCEEEEEeCCCcEEEEEcCCCceeee---eeeec--cCCCcCCCCCce
Q 001367 883 ----------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQTC---RSLQT--PDGVMTLAPSET 939 (1091)
Q Consensus 883 ----------~h----~~~V~~l~~spd----g~~las~s~Dg~i~vwd~~~~~~~~~---~~~~~--~~~~~~~~~~i~ 939 (1091)
|. ...|..|++||+ ++.|.-..-.+ -++|.+.+...... ..++. ..+.. ..-.
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~---s~~~ 278 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKY---NDAI 278 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTT---CCEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCC---CCcc
Confidence 11 246888999998 77777665544 35555543211110 01111 11100 1223
Q ss_pred EEEEc-CCCCEEEE-EecCeEEEEEcCC-c---ceeeeeec-CCccCEEEEEEeeCCCEEEEE
Q 001367 940 HIQFH-KDQTRFLL-VHETHLAIYEAEE-L---TCLKQWFP-ISSVPISQATFSCDCRMVFTS 995 (1091)
Q Consensus 940 ~l~fs-~dg~~la~-~~d~~i~vwd~~~-~---~~~~~~~~-~h~~~v~~v~fs~dg~~l~t~ 995 (1091)
.+++. .+|.+.++ ...+.|..|+..+ . +....+.. ..-..+..+.+.++|.+.++.
T Consensus 279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 45675 66776666 4678899999875 1 11122111 112345666666666554544
No 362
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=75.74 E-value=1e+02 Score=34.01 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=61.4
Q ss_pred CeeEEEecCCCC--EEEEEeCCeEEEEEccCce---eEEEec---C------CCCCeEEEEEcCC---CCcEEEEEeC--
Q 001367 803 AVPCFALSKNDA--YLFSASGGVISLYIVMTFK---TILTIM---P------PSPTATSLAFNPH---DNNVIAIGMD-- 863 (1091)
Q Consensus 803 ~v~~l~~s~dg~--~la~~~dg~i~iwd~~~~~---~~~~~~---~------~~~~i~~l~~s~~---~~~~la~g~~-- 863 (1091)
....|+|.|||. ++++-..|.|++++..... .+..+. . .......|+|+|+ ++.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999995 7777668999999754221 122221 1 1356788999993 2444443332
Q ss_pred C----------CeEEEEeccCc----------ceeeeec--cccCCeEEEEECCCCCEEEEEeCCC
Q 001367 864 D----------STILIYNARSS----------EVISKLE--GHSKRVTGLVFSDALNILVSSGGDA 907 (1091)
Q Consensus 864 d----------g~i~iwd~~~~----------~~~~~l~--~h~~~V~~l~~spdg~~las~s~Dg 907 (1091)
+ ..|.-|.+..+ +.+..+. ........|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 14444555421 2222222 1112357899999999888877644
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.82 E-value=11 Score=46.32 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=34.4
Q ss_pred cCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeec
Q 001367 978 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 978 ~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 1017 (1091)
..+.+++..+|..+++|.+.|+++|+|++.++.++.....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3566778888899999999999999999999999887653
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=70.90 E-value=1e+02 Score=32.00 Aligned_cols=158 Identities=8% Similarity=0.094 Sum_probs=89.2
Q ss_pred CCCeeEEE-ecC--CCCEEEEEe-CCeEEEEEccCceeE-------EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001367 801 QEAVPCFA-LSK--NDAYLFSAS-GGVISLYIVMTFKTI-------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 869 (1091)
Q Consensus 801 ~~~v~~l~-~s~--dg~~la~~~-dg~i~iwd~~~~~~~-------~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~i 869 (1091)
...|..+. +.. +..+++..+ +|.++-..+...... ..+.. ...+..+.... +...|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 34455443 332 466777776 799998887653322 22332 34555555544 4556777888998888
Q ss_pred Eecc--C---------cceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee-----eeeeeccCCCcC
Q 001367 870 YNAR--S---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMT 933 (1091)
Q Consensus 870 wd~~--~---------~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~ 933 (1091)
+... . |...-.+. ....|.++...+++.+|+.++..|.++.-.+..-.... ...++.....
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~-- 248 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR-- 248 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT--
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC--
Confidence 8776 2 11112232 34567777776677789999999999988876432110 1111111101
Q ss_pred CCCCceEEEE-cCCCCEEEEEecCeEEEEEcCC
Q 001367 934 LAPSETHIQF-HKDQTRFLLVHETHLAIYEAEE 965 (1091)
Q Consensus 934 ~~~~i~~l~f-s~dg~~la~~~d~~i~vwd~~~ 965 (1091)
..+..+.. ..+...++++.+|.+.-++...
T Consensus 249 --d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 249 --GRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp --CSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred --CeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 12333333 3344455557777777776553
No 365
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=67.07 E-value=1.4e+02 Score=31.97 Aligned_cols=195 Identities=9% Similarity=0.076 Sum_probs=96.9
Q ss_pred CeeEEEecCCCCEE-EEEeCCeEEEEEccCc-----------eeEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001367 803 AVPCFALSKNDAYL-FSASGGVISLYIVMTF-----------KTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILI 869 (1091)
Q Consensus 803 ~v~~l~~s~dg~~l-a~~~dg~i~iwd~~~~-----------~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~i~i 869 (1091)
.+..++++....+. +...+|.|..|-.... .....+.. ....|..++.. ....+.-..||.|+.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEE
Confidence 34445555444433 3344778888854321 11112221 12356666664 345566678999999
Q ss_pred EeccC-cce----------eeeecc-ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce---------eeeeeeecc
Q 001367 870 YNARS-SEV----------ISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI---------QTCRSLQTP 928 (1091)
Q Consensus 870 wd~~~-~~~----------~~~l~~-h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~---------~~~~~~~~~ 928 (1091)
|-... +++ ...+.. ....|..++......+.+....||.|+.|-...... .....+..+
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 262 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL 262 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG
T ss_pred eCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc
Confidence 96543 110 111111 223577777754335556677899999997543110 111111111
Q ss_pred CCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCccee-----------eeeecCCccCEEEEEEeeCCCEEEEEEc
Q 001367 929 DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----------KQWFPISSVPISQATFSCDCRMVFTSFV 997 (1091)
Q Consensus 929 ~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~-----------~~~~~~h~~~v~~v~fs~dg~~l~t~~~ 997 (1091)
.+ ..|..++.... ..+|...++.|+.|=....-.+ ..+.......|..|+.. ....+....
T Consensus 263 ~~-----~~v~~v~~G~~-hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~ 334 (389)
T 3kci_A 263 TG-----LGVVKVECGSQ-FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTE 334 (389)
T ss_dssp TT-----SCEEEEEEETT-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEET
T ss_pred CC-----CcEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECC
Confidence 11 12444443322 2233467888888865431111 11011112346655543 334455578
Q ss_pred CCcEEEEeCCC
Q 001367 998 DGTLSIHEASN 1008 (1091)
Q Consensus 998 dg~v~iwd~~~ 1008 (1091)
||.|+.|=...
T Consensus 335 ~G~v~~wG~n~ 345 (389)
T 3kci_A 335 DGEVYTWGDND 345 (389)
T ss_dssp TCCEEEEECCT
T ss_pred CCCEEEeeCCC
Confidence 99999997653
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.39 E-value=90 Score=38.27 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.6
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee
Q 001367 844 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 881 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l 881 (1091)
.+.+++..+ +..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 567777777 7789999999999999999999887654
No 367
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=62.91 E-value=1.6e+02 Score=31.36 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=80.8
Q ss_pred cEEEEEEecCCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecCCCC
Q 001367 735 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 814 (1091)
Q Consensus 735 ~i~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 814 (1091)
.+..++++......++...+|.++.|-.......-.+..... .....+.. -....|..++.. ...
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~-------------~~p~~v~~-l~~~~i~~va~G-~~h 170 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPC-------------DRPRVIES-LRGIEVVDVAAG-GAH 170 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCE-------------EEEEECGG-GTTSCEEEEEEC-SSE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccC-------------cCCeEecc-cCCCeEEEEEeC-cCe
Confidence 344566666677777788888888886443221110100000 00000000 012245555443 223
Q ss_pred EEEEEeCCeEEEEEccCc-e----------eEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCc-c-----
Q 001367 815 YLFSASGGVISLYIVMTF-K----------TILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-E----- 876 (1091)
Q Consensus 815 ~la~~~dg~i~iwd~~~~-~----------~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~-~----- 876 (1091)
.++...+|.|..|-.... + ....+.. ....|..++... +....+.-..||.|+.|-.... +
T Consensus 171 s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~ 249 (389)
T 3kci_A 171 SACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGG 249 (389)
T ss_dssp EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSS
T ss_pred EEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCC
Confidence 344445777888864321 0 1111111 233567777654 3345666778999999965431 1
Q ss_pred -----eeeeecc-ccCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 001367 877 -----VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 915 (1091)
Q Consensus 877 -----~~~~l~~-h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~ 915 (1091)
....+.. ....|..++... .+.+....||.|+.|-..
T Consensus 250 ~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 250 SDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp CCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEEEEECC
T ss_pred CCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEEEEeCC
Confidence 1111221 122466666643 344445789999999764
No 368
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=54.76 E-value=2.7e+02 Score=31.20 Aligned_cols=297 Identities=13% Similarity=0.079 Sum_probs=145.3
Q ss_pred CCCCcEEEEEcCCCceEEEEEcCCCc----------------------------EEEEEcCCCCceeeeceeEEeccccc
Q 001367 333 GSSSPMSMDFHPVQHTLLLVGTNVGD----------------------------TGLWDVNSGQKLFIRNFKVWDIGACS 384 (1091)
Q Consensus 333 h~~~V~~v~fspdg~~llasg~~dg~----------------------------i~iWd~~~~~~~~~~~~~~~~~~~~~ 384 (1091)
|-..+....|.-||+.=+++...+|+ +.|+|=.+|+.+....+..-.-..+.
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 56678888999999765666666665 67888778877654221100000000
Q ss_pred cceeeeeecCCCcc--EEEEEECC-CCCEEEEEE---CCCEEEEEEeeCCcccceeEEEeccc-----------cCeeEE
Q 001367 385 MLFKTALVRDPGVS--VNRVVWSP-DGSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHV-----------GNVNDL 447 (1091)
Q Consensus 385 ~~~~~~~~~~h~~~--V~~l~~sp-dg~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~h~-----------~~v~~~ 447 (1091)
.-- -.++... ..++++-. +.-.++.+- ....|..||..+++.. ....+.... ....-.
T Consensus 257 WGD----~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~-~~W~~d~~~~~~~~~~gqg~h~~~va 331 (591)
T 2zux_A 257 WGD----SYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLS-KLWTLDSSKSGNEAFAGQGNHNLSIA 331 (591)
T ss_dssp GTC----SSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEE-EEEEEETTSTTCGGGSSCCCSCCEEE
T ss_pred ccc----ccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceE-EEEEecCCCCCcccccccCCCCCeeE
Confidence 000 0001101 12233221 112333332 1234777777766432 222222210 234455
Q ss_pred EEcCCCCceEEEEeeCCCcEEEEeCCCCceeEEe-cCCCcceEEEeecccCCceEEEEEecCC----eEEEEecCCCCce
Q 001367 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGAR 522 (1091)
Q Consensus 448 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~ 522 (1091)
.+.-||+. -|+.|+. ++| ..|+.+... .+|...+....|.|+..|..++.+..++ -..+.|..+++.+
T Consensus 332 DVDgDG~d-EIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 332 DVDGDGKD-EIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp CCSSSSSC-EEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEE
T ss_pred eCCCCCCc-eEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEE
Confidence 56667775 4554442 445 556655554 3788777777787776676777776652 2445777777777
Q ss_pred eeecCC--CCcEEEEEEcCCCC--EEEEEecCCCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEeC
Q 001367 523 VDYDAP--GLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 598 (1091)
Q Consensus 523 ~~~~~~--~~~i~~~~~s~d~~--~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s~ 598 (1091)
...... .+......|.|+.. .+.+ . -.+++.. |+.+..... . ..-..+-|..|...-+.-
T Consensus 405 w~~~~~~d~Gr~~~~Didp~~pG~E~w~--~-------~~l~~~~-G~~i~~~~p-~---~~N~~i~WdGDl~relld-- 468 (591)
T 2zux_A 405 WGVYAGKDVGRGMAADIDPRYPGQEVWA--N-------GSLYSAK-GVKIGSGVP-S---STNFGIWWDGDLLREQLD-- 468 (591)
T ss_dssp EEECCSSCCCCEEEECCCTTSSSCEEEE--T-------TEEECTT-SCBCSSCCC-S---CCSEEECCSSSSSCEEEE--
T ss_pred EEcCCCCCCCceeEEecCCCCCceEEEe--c-------CceECCC-CCEecCCCC-C---CcceeEEECCCCcHhhhC--
Confidence 665432 23333444555422 2222 1 1245533 333322111 0 122346676665333332
Q ss_pred CCeEEEEECCCCeeEEEEeCCC-----CCCCCceEEEcc--CC--CEEEEEECCCeEEEEECCCCCee
Q 001367 599 DHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNK--NG--TLLAVIANENRIKILETPESNSV 657 (1091)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~--~~--~~l~~~~~dg~i~iwd~~~~~~~ 657 (1091)
.+.|.-|+...++....+...+ +.....++...- |. ..+.-..++..++||........
T Consensus 469 ~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt~~ 536 (591)
T 2zux_A 469 SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPTEH 536 (591)
T ss_dssp TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCSC
T ss_pred CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCCCCcc
Confidence 2378889988776444444322 111223344332 22 23433445567999987654333
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=54.06 E-value=1.3e+02 Score=34.81 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeeec
Q 001367 845 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 882 (1091)
Q Consensus 845 i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l~ 882 (1091)
|.++.+ +..++++-+.|+++|+|++.+++++....
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 444444 46799999999999999999999876654
No 370
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=53.29 E-value=1.9e+02 Score=29.08 Aligned_cols=193 Identities=7% Similarity=0.026 Sum_probs=103.1
Q ss_pred EEEecCCCCEEEEEeCCeEEE---EEccCceeEEEecCCCCCeEEEEEcCC-CCcEEEEEeCCCeEEEEeccCcc-----
Q 001367 806 CFALSKNDAYLFSASGGVISL---YIVMTFKTILTIMPPSPTATSLAFNPH-DNNVIAIGMDDSTILIYNARSSE----- 876 (1091)
Q Consensus 806 ~l~~s~dg~~la~~~dg~i~i---wd~~~~~~~~~~~~~~~~i~~l~~s~~-~~~~la~g~~dg~i~iwd~~~~~----- 876 (1091)
.+..+....+++..+.|.++- |++..++... +......|..+.. ++ +..+++..+.+|.++-..+..-.
T Consensus 29 ~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G 106 (276)
T 3no0_A 29 ILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQG 106 (276)
T ss_dssp EEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTT
T ss_pred EEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCC
Confidence 334444555666666777543 4443332111 2224456666644 32 35688899999999999876532
Q ss_pred -eeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce----eee-eeeeccCCCcCCCCCceEEEEcCCCCEE
Q 001367 877 -VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI----QTC-RSLQTPDGVMTLAPSETHIQFHKDQTRF 950 (1091)
Q Consensus 877 -~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~----~~~-~~~~~~~~~~~~~~~i~~l~fs~dg~~l 950 (1091)
....+. ..+.+..+........++..+..|.+..++...-.. ... ..+....+ ..|..+...+++..+
T Consensus 107 ~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 107 MPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNGEPYL 180 (276)
T ss_dssp EECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESSCSEE
T ss_pred eEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCCCCEE
Confidence 122233 234566666665666788889999888887643111 011 11221111 245555444445444
Q ss_pred E-EEecCeEEEEEcCCcce-------eeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEE--EeCCC
Q 001367 951 L-LVHETHLAIYEAEELTC-------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI--HEASN 1008 (1091)
Q Consensus 951 a-~~~d~~i~vwd~~~~~~-------~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~i--wd~~~ 1008 (1091)
+ ++..|.++...+..... +..+ ...+.+..+....++..++..+.+|.+.. ++...
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 4 47778888877653222 1111 12344544444333345555666777666 65543
No 371
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=53.26 E-value=13 Score=29.15 Aligned_cols=29 Identities=14% Similarity=0.136 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001367 7 DLVFLILQFLNEEGFTESAHMLERESRFY 35 (1091)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~l~~Es~~~ 35 (1091)
-+.-||-.||+=.||+-|+..++-|+|.+
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 35679999999999999999999999986
No 372
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=53.23 E-value=2.3e+02 Score=30.09 Aligned_cols=263 Identities=8% Similarity=0.025 Sum_probs=118.6
Q ss_pred CccEEEEEECC--CCCEEEEEECCC--EEEEEEe-eCCcccceeEE---Eec--------cccCeeEEEEcCC--CCceE
Q 001367 396 GVSVNRVVWSP--DGSLLGVAYSKH--IVQLYAY-HGGSDARQQLE---IDA--------HVGNVNDLAFSAP--CKQIS 457 (1091)
Q Consensus 396 ~~~V~~l~~sp--dg~~las~~~d~--~i~iwd~-~~~~~~~~~~~---~~~--------h~~~v~~~~~s~d--~~~~~ 457 (1091)
...|.+|++.| ++...|.+ ..+ .-.||.. ..|+....... +.. +...|.++++.|. .. .
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--~ 130 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG--T 130 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--C
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--E
Confidence 45799999998 55555544 333 0123333 33332221110 110 1125778999873 34 3
Q ss_pred EEEeeCCCcEEEEeCCCCceeEEecC-------------------CCcceEEEeecccCCceEEEEEecCCeEEEEecCC
Q 001367 458 VITCGDDKTIKVWDAVTGSRTYSFEG-------------------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518 (1091)
Q Consensus 458 l~s~~~d~~i~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 518 (1091)
+..++..+.|...+ ..|+.-..+.. ....+.++.+.+...+. ++.+..++.|... ..
T Consensus 131 l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~-l~vg~~~ggl~~s--~D 206 (394)
T 3b7f_A 131 WYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKH-LYIGMSSGGVFES--TD 206 (394)
T ss_dssp EEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTC-EEEEEETBEEEEE--SS
T ss_pred EEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCE-EEEEECCCCEEEE--CC
Confidence 44454455555443 33332222211 12356788886543333 4444444444332 22
Q ss_pred CCcee-eecC--C-----------CCcEEEEEEcCC-CCEEEEEecCCCCceEEEEEecCCceeeEEEec-ccc-cccce
Q 001367 519 LGARV-DYDA--P-----------GLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-LQL-QHNSV 581 (1091)
Q Consensus 519 ~~~~~-~~~~--~-----------~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~-~~~~v 581 (1091)
..... .... . ...+.++.+.|+ ...+.++.. . -|+..+- .++....+.. ... ....+
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~----~-gl~~s~D-~G~tW~~~~~~l~~~~~~~~ 280 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH----C-GIYRMDR-REGVWKRIGDAMPREVGDIG 280 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET----T-EEEEEET-TTTEEECGGGGSCTTTCSCE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC----C-eEEEeCC-CCCcceECCCCCCCCCccce
Confidence 22211 1110 0 134788999886 355655542 2 2444432 2332222221 110 00235
Q ss_pred EEEEEcCC-CCEEEEEeC-----------CCeEEEEECCC-CeeEEEEeC--CCCC----CCCceEEEccC-CCEEEEEE
Q 001367 582 SVVHFDTA-KDQILAAGD-----------DHVIKIWDMNK-VQLLTTIDA--GGGL----PENPRICFNKN-GTLLAVIA 641 (1091)
Q Consensus 582 ~~v~~~~~-~~~l~~~s~-----------dg~i~iwd~~~-~~~~~~~~~--~~~~----~~v~~v~~s~~-~~~l~~~~ 641 (1091)
.+++++|. ...++++.. ++...+|.... |+.-..+.. .... .....++++|. ...|++++
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~ 360 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGT 360 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEEC
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEe
Confidence 67888763 345555532 23344554443 343333321 1100 01236888874 35567776
Q ss_pred CCCeEEEEECCCCCeecccccccccceeeee
Q 001367 642 NENRIKILETPESNSVDAAGVLSDNLRKLSV 672 (1091)
Q Consensus 642 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 672 (1091)
.++.|..- ...+.....+...-..+.++++
T Consensus 361 ~~g~l~~S-~D~G~tW~~~~~~lp~~~~v~~ 390 (394)
T 3b7f_A 361 TGGEIWAS-ADEGEHWQCIASHLPHIYAVQS 390 (394)
T ss_dssp TTSCEEEE-SSTTSBCEEEECSCSCEEEEEE
T ss_pred CCCeEEEE-CCCCCCceEcccCCCCeeEEEE
Confidence 66665532 3344444444444444555555
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=52.85 E-value=2.1e+02 Score=29.37 Aligned_cols=151 Identities=11% Similarity=0.085 Sum_probs=80.2
Q ss_pred CCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEE-ecCCCCEEEEEeCC
Q 001367 744 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA-LSKNDAYLFSASGG 822 (1091)
Q Consensus 744 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~-~s~dg~~la~~~dg 822 (1091)
++.+++..+.+|.++.-.+..- ............+.. . ..+..+. ...+...++..+.|
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~-----------------~~~~r~G~~~i~l~~--~-d~lv~~~~~~~~~~i~l~T~~G 167 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEF-----------------NRLRTAGKVAIKLVD--G-DELIGVDLTSGEDEVMLFSAEG 167 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGG-----------------TTCCTTCEESSCCCT--T-CCEEEEEEECTTCEEEEEETTS
T ss_pred CCcEEEEEeCCCeEEEEEHHHh-----------------hccccCCeEEEEECC--C-CEEEEEEEeCCCCEEEEECCCC
Confidence 4567888999999987654321 111111122222221 2 3444443 34444455555678
Q ss_pred eEEEEEccCceeE---------EEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcc---------eeeeeccc
Q 001367 823 VISLYIVMTFKTI---------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGH 884 (1091)
Q Consensus 823 ~i~iwd~~~~~~~---------~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~---------~~~~l~~h 884 (1091)
.+..+....-... -.+. ....|.++...+ ++..+++.+..|.++-.++.... ....+..-
T Consensus 168 ~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~ 245 (307)
T 1zi0_A 168 KVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 245 (307)
T ss_dssp EEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCC-SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTT
T ss_pred cEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCC
Confidence 8877776532211 1222 334566666554 45578888999999888774321 11223323
Q ss_pred cCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001367 885 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 885 ~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~ 916 (1091)
.+.+..+....+...++..+.+|.+.-.++..
T Consensus 246 ~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 246 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 35555554433445555666777766666554
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=52.28 E-value=27 Score=39.74 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=40.9
Q ss_pred ceEEEEcCCCCEEEEEec-------------CeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEE
Q 001367 938 ETHIQFHKDQTRFLLVHE-------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS 995 (1091)
Q Consensus 938 i~~l~fs~dg~~la~~~d-------------~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~ 995 (1091)
.-.|+|+|+|.++++... +.+.+.+..+++..+-....-...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 457999999996666321 2456667667765544333347789999999999988765
No 375
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=50.11 E-value=37 Score=38.17 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=41.7
Q ss_pred CceEEEEcCCCCEEEEEe-------------cCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEE
Q 001367 937 SETHIQFHKDQTRFLLVH-------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 996 (1091)
Q Consensus 937 ~i~~l~fs~dg~~la~~~-------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~ 996 (1091)
..-.|.|.++|.+.++.. ...+..++..+++............++.++||||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 356899999999877421 125777777777754433222346789999999999887764
No 376
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=50.04 E-value=32 Score=35.39 Aligned_cols=111 Identities=12% Similarity=0.129 Sum_probs=60.3
Q ss_pred HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhhhhhhhhcCCCHHHHHHHHHhhccc-cCCCCHHHHHHHH
Q 001367 38 MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKD-FAPGNEELFKELA 116 (1091)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~a~~~l~~~l~~-~~~~~~~~~~~l~ 116 (1091)
+.+|++.|.+|+|-+|.+.+..+ . .+ ++.++++++|+++|.+-..- +...+...-..|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl------~----~R----------y~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI------A----NR----------YVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH------H----HH----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH------H----HH----------HHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 68999999999999999998765 1 11 22334555555555542111 1122334444565
Q ss_pred hhcccccccchhccccccCCChHHHHHHHHHHHHhhhcCccccccccCCCcchHHHHHHHHHHHHHHHhcCC
Q 001367 117 QLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCA 188 (1091)
Q Consensus 117 ~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~~~ 188 (1091)
.++.- ..... ++ ....+++.+|. +|-+.+|++ .+.| .++++.|++|=.....
T Consensus 77 ~llve-v~~~~----~~-~~~~~~~~rl~-~l~~~~p~~------------~~~r-~~fi~~ai~WS~~~g~ 128 (312)
T 2wpv_A 77 FYLLE-VYDLA----EV-KVDDISVARLV-RLIAELDPS------------EPNL-KDVITGMNNWSIKFSE 128 (312)
T ss_dssp HHHHH-HHHHT----TC-CCSHHHHHHHH-HHHTTCCTT------------CTTH-HHHHHHHHHHHHHTSS
T ss_pred HHHHH-HHHHc----CC-CCCHHHHHHHH-HHHHHCCCC------------CchH-HHHHHHHHHHHhhcCC
Confidence 55442 11111 11 11233344333 555555552 2333 7889999999876543
No 377
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=49.38 E-value=2.7e+02 Score=29.79 Aligned_cols=198 Identities=11% Similarity=0.065 Sum_probs=95.3
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeccC-cce----------eeeeccc-cCCeEEEEECCCCCEEEEEeCCCcEEE
Q 001367 844 TATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEV----------ISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFV 911 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~-~~~----------~~~l~~h-~~~V~~l~~spdg~~las~s~Dg~i~v 911 (1091)
.|..++.. ....+.-..||.|+.|-... +++ ...+... ...|..++... .+.+....||.|+.
T Consensus 122 ~i~~ia~G---~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~--~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 122 RIKQIACG---DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGA--EHTAAVTEDGDLYG 196 (406)
T ss_dssp CEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTSCEEE
T ss_pred CEEEEEEC---hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCC--CeEEEEeCCCCEEE
Confidence 57777664 34555567899999997543 111 1112211 22577776653 34555678999999
Q ss_pred EEcCCCce---------eeeeeeeccCCCcCCCCCceEEEEcCCCCEEEEEecCeEEEEEcCCccee----------eee
Q 001367 912 WDVDGWGI---------QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL----------KQW 972 (1091)
Q Consensus 912 wd~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~----------~~~ 972 (1091)
|-...... .....+..+.+ ..+..++.... ..++...++.|+.|-....-.+ ...
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~v~~~~~-----~~i~~va~G~~-ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~ 270 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPERVTSTGG-----EKMSMVACGWR-HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK 270 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEECCCSTT-----CCEEEEEECSS-EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred eeCCCCCCCCCCCCCCcCccEEecccCC-----ceEEEEEECCC-cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEE
Confidence 97543110 01111111111 13444443322 2233467788888864322111 000
Q ss_pred ec-CCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCce------EEEeecccccCCCCcccccceeEEEeCCCCCCeE
Q 001367 973 FP-ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV------QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1045 (1091)
Q Consensus 973 ~~-~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1045 (1091)
.. .....|..++-. ..+.+.-..||.|+.|=....-. .....+...... ....|..+ +- .....
T Consensus 271 v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~v--a~---G~~hs 341 (406)
T 4d9s_A 271 LEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP--DDQKVVQV--SC---GWRHT 341 (406)
T ss_dssp CGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG--GGCCEEEE--EE---CSSEE
T ss_pred ecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc--CCCcEEEE--Ee---CCCeE
Confidence 10 112346655543 33444556899999996443111 111111100000 01123322 22 23456
Q ss_pred EEEecCCcEEEEecCC
Q 001367 1046 AVGLTNGEVYVIEPNE 1061 (1091)
Q Consensus 1046 ~~g~~dg~v~~w~~~~ 1061 (1091)
++-..||.|+.|--..
T Consensus 342 ~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 342 LAVTERNNVFAWGRGT 357 (406)
T ss_dssp EEEETTSCEEEEECCT
T ss_pred EEEeCCCCEEEecCCC
Confidence 6677899999998654
No 378
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=48.93 E-value=23 Score=31.00 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHhhhhcCh-hHHHHHHHHhcCCChh
Q 001367 3 KLNKDLVFLILQFLNEEGF-TESAHMLERESRFYFD 37 (1091)
Q Consensus 3 ~~~~e~~~li~q~L~~~g~-~~s~~~l~~Es~~~~~ 37 (1091)
....++...|+..|.+.|| ..+...+.++.|++.+
T Consensus 19 ~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~ 54 (130)
T 2k9m_A 19 GKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE 54 (130)
T ss_dssp SHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH
Confidence 4456788899999999997 4566667677776554
No 379
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=48.89 E-value=51 Score=33.65 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhhcC-hhHHHHHHHH--hcCCCh-h--HHHH--HHHhcCcCHHHHHHHhcc
Q 001367 6 KDLVFLILQFLNEEG-FTESAHMLER--ESRFYF-D--MKFF--EDMILDGKWEDVEQYLSS 59 (1091)
Q Consensus 6 ~e~~~li~q~L~~~g-~~~s~~~l~~--Es~~~~-~--~~~~--~~~i~~g~w~~~~~~l~~ 59 (1091)
-+.++++.+++...| +.++.+.|++ +.++.. + +..+ .-....|++++|+..+..
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence 345677777777777 7777777776 233222 2 1111 334456777777777765
No 380
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.41 E-value=48 Score=38.40 Aligned_cols=32 Identities=9% Similarity=0.004 Sum_probs=27.6
Q ss_pred eeCCCEEEEEEcCCcEEEEeCCCCceEEEeec
Q 001367 986 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1017 (1091)
Q Consensus 986 s~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 1017 (1091)
..+..+++|-+.|.++|+|++.++.++.....
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34578999999999999999999998877664
No 381
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=47.71 E-value=74 Score=27.22 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=49.4
Q ss_pred hhhhcChhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhhhhhhhhcCCC
Q 001367 15 FLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHD 89 (1091)
Q Consensus 15 ~L~~~g~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~ 89 (1091)
+++.--|.++...+++=-.+..+ ...=.-....|+|++|+..+...-.+++.. . ...+. .- .=+...|+
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~-~a~~~--lg--~~~~~~~~ 96 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-I-KGYIR--KA--ACLVAMRE 96 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHHH--HH--HHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-h-HHHHH--HH--HHHHHCCC
Confidence 33333477777777664333222 111133445688888888877542222221 1 11111 11 11245678
Q ss_pred HHHHHHHHHhhccccCCCCHHHHHHHHhhc
Q 001367 90 IAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1091)
Q Consensus 90 ~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1091)
+++|+..+++-+. +.+.+++-...|..+|
T Consensus 97 ~~~A~~~~~~al~-l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 97 WSKAQRAYEDALQ-VDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHH-HCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-HCcCCHHHHHHHHHhc
Confidence 8888888887433 3334555555555543
No 382
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=47.70 E-value=2.3e+02 Score=28.44 Aligned_cols=113 Identities=15% Similarity=0.165 Sum_probs=70.7
Q ss_pred CCCeeEEEecC-CCCEEEEEe-CCeEEEEEccCce------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEec
Q 001367 801 QEAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFK------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 872 (1091)
Q Consensus 801 ~~~v~~l~~s~-dg~~la~~~-dg~i~iwd~~~~~------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~ 872 (1091)
...|..+.... +..+++..+ +|.++-..+.... ....+. ....+..+.... +...++..+..|.+..+..
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEh
Confidence 44555554321 456677666 7999998876542 111222 234565555555 5557778889999888876
Q ss_pred cC---------cceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001367 873 RS---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 873 ~~---------~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~ 916 (1091)
.. |.....+.. ...|.++...+++..++..+..|.++...++.
T Consensus 145 ~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp GGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred hhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 43 111222332 35677766656677888899999999888765
No 383
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=45.89 E-value=66 Score=27.15 Aligned_cols=59 Identities=7% Similarity=-0.020 Sum_probs=30.6
Q ss_pred eEEEEcCCCCEEEEEecCeEEEEEcCCcceeeeeecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCCC
Q 001367 939 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1008 (1091)
Q Consensus 939 ~~l~fs~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~ 1008 (1091)
..+.+..||.+++...+..-.+|...+.. ...-..+.+..||.+++.. .++.+ +|...+
T Consensus 26 ~~L~~q~dGNLvL~~~~~~~~vWssnt~~---------~~~~~~l~l~~dGNLVl~d-~~~~~-iW~S~t 84 (113)
T 3mez_B 26 YSLVMRDDCNLVLTKGSKTNIVWESGTSG---------RGQHCFMRLGHSGELDITD-DRLNT-VFVSNT 84 (113)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECCCTT---------SCSSCEEEECTTSCEEEEC-TTSCE-EEECSC
T ss_pred EEEEEcCCCEEEEEECCCCEEEEECCccc---------CCcCEEEEEeCCCcEEEEC-CCCCE-EEECCC
Confidence 35666666666554332223456544321 1112356777888877753 34444 676543
No 384
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=45.30 E-value=1.3e+02 Score=24.88 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=16.4
Q ss_pred eEEEecCCCCEEEEEeCCeEEEEEcc
Q 001367 805 PCFALSKNDAYLFSASGGVISLYIVM 830 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~dg~i~iwd~~ 830 (1091)
..+.+..||.+++...++. .+|...
T Consensus 53 ~~L~l~~dGnLvL~d~~~~-~vWss~ 77 (105)
T 4h3o_A 53 CSAVLQSDGNFVVYDSSGR-SLWASH 77 (105)
T ss_dssp CEEEECTTSCEEEECTTCC-EEEECC
T ss_pred EEEEEeCCccEEEECCCcE-EEEEec
Confidence 3577888888777655444 367644
No 385
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=45.22 E-value=47 Score=34.45 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=58.7
Q ss_pred HHHHHHHhcCcCH---HHHHHHhccCCCcCCccccchhhhhhhhhhhhhhhcCCCHHHHHHHHHhhcccc-CCCCHHHHH
Q 001367 38 MKFFEDMILDGKW---EDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDF-APGNEELFK 113 (1091)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~a~~~l~~~l~~~-~~~~~~~~~ 113 (1091)
+.+|++.|.+|+| -+|.+.+..+ . .+| +.++++++|+++|..-..-+ .......-.
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi------~----~Ry----------~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV------A----ARY----------SKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH------H----HHH----------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH------H----HHH----------HhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 6789999999999 8888887755 1 122 23445555555554421111 112334444
Q ss_pred HHHhhcccccccchhccccccCCChHHHHHHHHHHHHhhhcCccccccccCCCcchHHHHHHHHHHHHHHHhcCCC
Q 001367 114 ELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCAN 189 (1091)
Q Consensus 114 ~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~~~~ 189 (1091)
.|+.+|. ...... ++. ...+++.+| .+|-+.++|+ .|.| ..+|+.|++|=.....+
T Consensus 76 DL~~llv-evy~~~----~~~-~~~~~~~rL-~~L~~~~~~~------------~p~r-~~fi~~ai~WS~~~g~~ 131 (336)
T 3lpz_A 76 DLAVLLV-DTFRQA----GQR-VDGASRGKL-LGCLRLFQPG------------EPVR-KRFVKEMIDWSKKFGDY 131 (336)
T ss_dssp HHHHHHH-HHHHHH----TCC-CCHHHHHHH-HHHHTTSCTT------------CHHH-HHHHHHHHHHHHHHSSC
T ss_pred HHHHHHH-HHHHHc----CCC-CCHHHHHHH-HHHHHhCCCC------------CcHH-HHHHHHHHHHHhhcCCC
Confidence 5665554 111111 111 122334333 3444445542 2344 77999999998764433
No 386
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.26 E-value=71 Score=40.27 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcceeeee
Q 001367 844 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 881 (1091)
Q Consensus 844 ~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~~~~l 881 (1091)
.+.+++..+ +..++++-+.|+++++|++.+++++.+.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 345556666 7789999999999999999999887654
No 387
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=40.31 E-value=7.6 Score=49.14 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=33.4
Q ss_pred CEEEEEEeeCCCEEEEEEcCCcEEEEeCCCCceEEEeeccc
Q 001367 979 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1019 (1091)
Q Consensus 979 ~v~~v~fs~dg~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~ 1019 (1091)
.+.+++..++..+++|-+.|+++|||++.++.++.......
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~ 279 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQ 279 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhh
Confidence 34455667888999999999999999999999988766433
No 388
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=38.97 E-value=96 Score=35.29 Aligned_cols=64 Identities=14% Similarity=0.246 Sum_probs=47.5
Q ss_pred cEEEEEEcCCCCEEEEEecC--------CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEE
Q 001367 531 GCTRMAYSANGRRLFSCGTS--------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 596 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~--------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 596 (1091)
..-.|+|+|.|++++.--.+ ..+...+.+.+..+++..+.+.+.. ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEE
Confidence 34678999999855543211 0134667888888899888887765 6789999999999888775
No 389
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=37.66 E-value=3.9e+02 Score=28.18 Aligned_cols=65 Identities=6% Similarity=-0.016 Sum_probs=38.2
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC-------CeeEEEEeCCCCCCCCceEEEccCCCEEEEEECCCeEEEEECC
Q 001367 587 DTAKDQILAAGDDHVIKIWDMNK-------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 652 (1091)
Q Consensus 587 ~~~~~~l~~~s~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 652 (1091)
-|+...+++.+.+|.|+--.+.. ++-+..+..... ..+..+........++..++.|.++-+...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~ 75 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEE-DFIDQLWLVNTHDTLLTFTSSGKVFWLPVH 75 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCC-CCEEEEEEECTTCEEEEEETTSEEEEEEGG
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCC-CEEEEEEEecCCCEEEEEeCCCeEEEEEHH
Confidence 46778899999999998765432 112222322222 234444444555667777777777666543
No 390
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=37.13 E-value=1.6e+02 Score=25.99 Aligned_cols=94 Identities=12% Similarity=0.161 Sum_probs=54.9
Q ss_pred hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhhhhhhhhcCCCHHHHHH
Q 001367 21 FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALN 95 (1091)
Q Consensus 21 ~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~a~~ 95 (1091)
+.++...+++-.....+ ...=+-....|+|++|+..+...-.++++. . .+.+.+ =.=+...|++++|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~-~a~~~l----g~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-P-KAHRFL----GLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHHHH----HHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H-HHHHHH----HHHHHHcCchHHHHH
Confidence 44555556655544332 111133566799999999998752333221 1 122221 112346799999999
Q ss_pred HHHhhccccCCCCHHHHHHHHhhccc
Q 001367 96 ILKKDLKDFAPGNEELFKELAQLLTL 121 (1091)
Q Consensus 96 ~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1091)
.+++-+. +.+.+++.+..|+.++..
T Consensus 87 ~~~~al~-~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVE-LNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 9998543 334567777788876654
No 391
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=35.81 E-value=6e+02 Score=29.81 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=36.2
Q ss_pred ceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-----CCCCceEEEcc-CCCEEEEEE
Q 001367 580 SVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----LPENPRICFNK-NGTLLAVIA 641 (1091)
Q Consensus 580 ~v~~v~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~-~~~~l~~~~ 641 (1091)
.|..++++|.. ..++++...+.|+.++-. |+.-..+..... ...+.+++++| +...++++.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 78999999874 567777767776666533 333222322111 12478899998 444555544
No 392
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.52 E-value=1.5e+02 Score=33.30 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCCEEEEEecC--------CCCceEEEEEecCCceeeEEEecccccccceEEEEEcCCCCEEEEEe
Q 001367 531 GCTRMAYSANGRRLFSCGTS--------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597 (1091)
Q Consensus 531 ~i~~~~~s~d~~~l~~~~~~--------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~s 597 (1091)
....|.|.++|.+.+..-.. +.+...++.++..+++..+.+.+.. ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~--~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC--CccccCCEECCCCCEEEEEE
Confidence 45689999999877733111 1124478888888888777765543 35789999999999888753
No 393
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.60 E-value=84 Score=29.75 Aligned_cols=100 Identities=11% Similarity=0.202 Sum_probs=64.1
Q ss_pred cchhhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHH-HHHhhcccccccchhccccccCCChHHHHHHHHH
Q 001367 69 STKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFK-ELAQLLTLDDIRDHELLSKYYGDALSARKNMMLE 147 (1091)
Q Consensus 69 ~~~~~~~i~~q~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~-~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 147 (1091)
...+.-+|.+|..+=.+++|++.+|..+|++.+..-. +.+.++ .|..++...+.. ++-+-+. |-..++++
T Consensus 109 ~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~--s~~kLr~kL~~II~~Kd~~-H~~lqnF------Sy~~~~~k 179 (235)
T 3bu8_A 109 VESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP--TTQKLRNDLLNIIREKNLA-HPVIQNF------SYETFQQK 179 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG--GGHHHHHHHHHHHHHTCTT-SHHHHTC------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC--CchHHHHHHHHHHhccCcc-cHHHHhc------cHHHHHHH
Confidence 4457788999999999999999999999999877432 333333 566666654432 2222221 45667777
Q ss_pred HHHhhhcCccccccccCCCcchHHHHHHHHHHHHHHHhcCCC
Q 001367 148 LKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCAN 189 (1091)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~~~~ 189 (1091)
+..++...+= .++. -||+.|.+-+.++|..
T Consensus 180 i~~fve~~~~---------~a~~---FLL~~A~Kv~ks~~~~ 209 (235)
T 3bu8_A 180 MLRFLESHLD---------DAEP---YLLTMAKKALKSESAA 209 (235)
T ss_dssp HHHHHHTTSC---------CCCC---HHHHHHHHHTTTC---
T ss_pred HHHHHHHHhc---------ccch---HHHHHHHHHHhhcccc
Confidence 7777765321 2333 5778888888877654
No 394
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=32.95 E-value=4.1e+02 Score=27.06 Aligned_cols=113 Identities=9% Similarity=0.161 Sum_probs=66.6
Q ss_pred CCCeeEEEec---CCCCEEEEEe-CCeEEEEEccCcee-------EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001367 801 QEAVPCFALS---KNDAYLFSAS-GGVISLYIVMTFKT-------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 869 (1091)
Q Consensus 801 ~~~v~~l~~s---~dg~~la~~~-dg~i~iwd~~~~~~-------~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~i 869 (1091)
...|.++..- .++.+++..+ .|.++-..+..... ...+... ..+..+.... +...++..+.+|.+..
T Consensus 94 ~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~-~~~~i~l~T~~G~~ir 171 (307)
T 1zi0_A 94 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS-GEDEVMLFSAEGKVVR 171 (307)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC-CCCEEEEECCCCcEEE
Confidence 3345544332 3455555555 79998887753221 1223323 4555555544 4456777888998888
Q ss_pred EeccCc---------ceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001367 870 YNARSS---------EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 870 wd~~~~---------~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~ 916 (1091)
++...- ...-.+. ..+.|.++...+++..+++.+..|.++-.+++.
T Consensus 172 f~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 172 FKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 876431 1112232 235677776656667788899999998888754
No 395
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=32.55 E-value=4.2e+02 Score=27.06 Aligned_cols=109 Identities=6% Similarity=0.022 Sum_probs=59.9
Q ss_pred CCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEEecC-CCCEEEEEeCC
Q 001367 744 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGG 822 (1091)
Q Consensus 744 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~~~dg 822 (1091)
+..+++..+.+|.++...+..-. ...+.-.....+. ....+..+.... +...++...+|
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~-----------------~~r~~G~~~i~L~---~~d~lv~~~~~~~~~~i~l~T~~G 172 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFK-----------------AVKSRGVIVIKLN---DKDFVTSAEIVFKDEKVICLSKKG 172 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGC-----------------C----CEECBCCC---TTCCEEEEEEECTTCEEEEEETTS
T ss_pred CCCEEEEEeCCCeEEEEEHHHhh-----------------ccCCCcEEEEecC---CCCEEEEEEEeCCCCEEEEEeCCC
Confidence 45678888999988876543211 1101112222232 234444444444 44455555579
Q ss_pred eEEEEEccCce---------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccC
Q 001367 823 VISLYIVMTFK---------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 874 (1091)
Q Consensus 823 ~i~iwd~~~~~---------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~ 874 (1091)
.+..+....-. ..-.+. ....|..+..-. ++..|++.+..|..+..++..
T Consensus 173 ~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 173 SAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECT-TCSEEEEEETTSEEEEEEGGG
T ss_pred cEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEEC-CCCeEEEEECCCceEEEEHHH
Confidence 88888875421 111222 234566665554 455677889999999888754
No 396
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=30.32 E-value=1.5e+02 Score=26.08 Aligned_cols=15 Identities=27% Similarity=0.144 Sum_probs=8.9
Q ss_pred hcCCCHHHHHHHHHh
Q 001367 85 LDGHDIAKALNILKK 99 (1091)
Q Consensus 85 l~~~~~~~a~~~l~~ 99 (1091)
+..|+.++|+..+++
T Consensus 100 ~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 100 LQXGELAEAESGLFL 114 (148)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 345666666666655
No 397
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=29.79 E-value=1.9e+02 Score=24.02 Aligned_cols=87 Identities=8% Similarity=-0.050 Sum_probs=45.4
Q ss_pred HHHHHHhhhhcChhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhhhhhh
Q 001367 9 VFLILQFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFE 83 (1091)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lE 83 (1091)
..+...++...-|.++...+++=.....+ ...-.-....|+|++|+..+.......... ..+.+.+- .=
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la----~~ 93 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRKA----AA 93 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH----HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHHH----HH
Confidence 33444444555577777777765544332 122233456788888888876542222111 01111111 11
Q ss_pred hhcCCCHHHHHHHHHhhc
Q 001367 84 ALDGHDIAKALNILKKDL 101 (1091)
Q Consensus 84 ll~~~~~~~a~~~l~~~l 101 (1091)
+...|++++|+..+++-+
T Consensus 94 ~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 245678888888887643
No 398
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=29.38 E-value=30 Score=27.53 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.4
Q ss_pred CCchhHHHHHHHHHhhhhc
Q 001367 1 MSKLNKDLVFLILQFLNEE 19 (1091)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~ 19 (1091)
|+..+++++..|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6777899999999999764
No 399
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=28.89 E-value=62 Score=23.87 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHhhhhcChhHHHHHHHHhcCC
Q 001367 4 LNKDLVFLILQFLNEEGFTESAHMLERESRF 34 (1091)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~l~~Es~~ 34 (1091)
.++.+.|||+--|.-=||.+.|..|..+.+.
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~ 45 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKA 45 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 4678899999999999999999999888775
No 400
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=27.01 E-value=1.4e+02 Score=29.23 Aligned_cols=109 Identities=6% Similarity=0.049 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhhcC-hhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhhh
Q 001367 7 DLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1091)
Q Consensus 7 e~~~li~q~L~~~g-~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 80 (1091)
|+.....+.+...| |.++...+++=-....+ ...-.-....|++++|+..+......+.+. . .....+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~-~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT--K-AKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT--T-CCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch--h-HHHHHHHHH
Confidence 33333444444444 78887777764333221 222345567899999999887642222111 1 211112222
Q ss_pred hhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhc
Q 001367 81 FFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1091)
Q Consensus 81 ~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1091)
-.-+...|++++|+..+++-+. +.+.+...+..|..+.
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~l~~~~ 118 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVD-RDTTRLDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HSTTCTHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHh-cCcccHHHHHHHHHHH
Confidence 2223456888888888887443 2222334444444443
No 401
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=26.34 E-value=5.5e+02 Score=26.42 Aligned_cols=160 Identities=9% Similarity=0.084 Sum_probs=85.3
Q ss_pred cEEEEEEec---CCCeEEEeecCceEEEeecCCcccccccceeeccCCccccCCCCCceeeecCCCCCCCCCeeEEE-ec
Q 001367 735 KISRLTYNN---GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA-LS 810 (1091)
Q Consensus 735 ~i~~~~~s~---dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~-~s 810 (1091)
.|.++..-+ +...++..+.+|.++.-.+..-. .....-.....+. ....+..+. .+
T Consensus 96 ~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~-----------------~~~r~G~~~i~lk---e~D~lv~~~~~~ 155 (327)
T 3uc1_A 96 RIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFD-----------------SNRSGGIVAVNLR---DNDELVGAVLCS 155 (327)
T ss_dssp CEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGC-----------------CCCSSCEESCBCC---TTCCEEEEEEEC
T ss_pred EEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhh-----------------ccccCceEEEEEC---CCCEEEEEEEec
Confidence 444443333 46789999999999876543211 1111112222222 233344443 34
Q ss_pred CCCCEEEEEeCCeEEEEEcc--Cce---------eEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeccCcce--
Q 001367 811 KNDAYLFSASGGVISLYIVM--TFK---------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-- 877 (1091)
Q Consensus 811 ~dg~~la~~~dg~i~iwd~~--~~~---------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~i~iwd~~~~~~-- 877 (1091)
.+...++..+.|.+..+... .-. ..-.+. ....|.++...+ ++..|+..+..|.++.-.+..-..
T Consensus 156 ~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e~~~~~ 233 (327)
T 3uc1_A 156 AGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEEYPVQG 233 (327)
T ss_dssp TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred CCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHHccccC
Confidence 44444555557887777766 221 111122 344577766665 556888899999998887653221
Q ss_pred -----e--eeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 001367 878 -----I--SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 916 (1091)
Q Consensus 878 -----~--~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~ 916 (1091)
+ ..+..-.+.+..+....+...++..+.+|.+.-++...
T Consensus 234 R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 234 RGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred cCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 1 12222234455554444445566667777776666654
No 402
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=26.16 E-value=2.4e+02 Score=22.45 Aligned_cols=88 Identities=8% Similarity=-0.071 Sum_probs=45.8
Q ss_pred HHHHHHhhhhcChhHHHHHHHHhcCCCh---h--HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhhhhhh
Q 001367 9 VFLILQFLNEEGFTESAHMLERESRFYF---D--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFE 83 (1091)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~l~~Es~~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lE 83 (1091)
..+...++...-|.++...+++=-.... + ...-.-....|+|++|+..+.......... . .+.+.+- .=
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~~a----~~ 81 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-G-KGYSRKA----AA 81 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-H-HHHHHHH----HH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-H-HHHHHHH----HH
Confidence 3444455555557777777765332222 1 111233445688999888877642222111 1 1111111 11
Q ss_pred hhcCCCHHHHHHHHHhhcc
Q 001367 84 ALDGHDIAKALNILKKDLK 102 (1091)
Q Consensus 84 ll~~~~~~~a~~~l~~~l~ 102 (1091)
+...|++.+|+..+++-+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 2457888888888887443
No 403
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=24.36 E-value=68 Score=24.75 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHhhhhcCh-hHHHHHHHHhcCCChh-HHHH
Q 001367 3 KLNKDLVFLILQFLNEEGF-TESAHMLERESRFYFD-MKFF 41 (1091)
Q Consensus 3 ~~~~e~~~li~q~L~~~g~-~~s~~~l~~Es~~~~~-~~~~ 41 (1091)
.....+...|+..|.+.|| ..+...+.++.|++.+ +...
T Consensus 28 ~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~v 68 (76)
T 2k9l_A 28 GKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKV 68 (76)
T ss_dssp TTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHH
Confidence 3456788999999999997 4566666666677654 4433
No 404
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=24.27 E-value=1e+02 Score=24.67 Aligned_cols=54 Identities=6% Similarity=-0.105 Sum_probs=24.8
Q ss_pred HhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhhhhhhhhcC-CCHHHHHHHHHhhc
Q 001367 44 MILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDG-HDIAKALNILKKDL 101 (1091)
Q Consensus 44 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~-~~~~~a~~~l~~~l 101 (1091)
....|+|++|+..+.......... ....++...-.=++.. |+.++|+..+++-+
T Consensus 50 ~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 50 LYNLERYEEAVDCYNYVINVIEDE----YNKDVWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSCCT----TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHccCHHHHHHHHHHHHHhCccc----chHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 344577777777766531221110 0011111111112456 67777777776643
No 405
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=24.08 E-value=7.9e+02 Score=27.49 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=29.2
Q ss_pred ccceEEEEEcCCC--CEEEEEeCCC----eEEEEECCCCeeEEEEeCC
Q 001367 578 HNSVSVVHFDTAK--DQILAAGDDH----VIKIWDMNKVQLLTTIDAG 619 (1091)
Q Consensus 578 ~~~v~~v~~~~~~--~~l~~~s~dg----~i~iwd~~~~~~~~~~~~~ 619 (1091)
...+....|.|+. ..++.+.+++ -..+.|..+|+.+......
T Consensus 363 GDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~ 410 (591)
T 2zux_A 363 GDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAG 410 (591)
T ss_dssp CSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCC
Confidence 4777777888874 4666665541 3556899999998877643
No 406
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=23.65 E-value=39 Score=23.81 Aligned_cols=15 Identities=40% Similarity=0.840 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhhhhc
Q 001367 5 NKDLVFLILQFLNEE 19 (1091)
Q Consensus 5 ~~e~~~li~q~L~~~ 19 (1091)
+++++..|+|||+..
T Consensus 2 ~K~la~sIi~FL~~~ 16 (52)
T 4gof_A 2 KKRLAYAIIQFLHDQ 16 (52)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHh
Confidence 678999999999764
No 407
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=23.60 E-value=2.4e+02 Score=28.25 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=49.9
Q ss_pred hhhcChhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhhhhhhhhcCCCH
Q 001367 16 LNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 90 (1091)
Q Consensus 16 L~~~g~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~ 90 (1091)
+..--|.++...+++=.....+ ...-+-.+..|++++|+..+..+....... ....-..-+++...++.
T Consensus 128 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------RYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------HHHHHHHHHHHHHHHTS
T ss_pred HhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------HHHHHHHHHHHHhhccc
Confidence 3333366665555543322221 222244556788888888887763332211 11122233445555666
Q ss_pred HHHHHHHHhhccccCCCCHHHHHHHHhhccc
Q 001367 91 AKALNILKKDLKDFAPGNEELFKELAQLLTL 121 (1091)
Q Consensus 91 ~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1091)
.+|+..+++-+.- .+.+.+....|+.++..
T Consensus 202 ~~a~~~l~~al~~-~P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 202 TPEIQQLQQQVAE-NPEDAALATQLALQLHQ 231 (287)
T ss_dssp CHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhc-CCccHHHHHHHHHHHHH
Confidence 6677777664432 23455555556655543
No 408
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=23.59 E-value=1.8e+02 Score=24.20 Aligned_cols=82 Identities=9% Similarity=0.052 Sum_probs=44.7
Q ss_pred HhhhhcChhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhhhhhhhhcCC
Q 001367 14 QFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGH 88 (1091)
Q Consensus 14 q~L~~~g~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~ 88 (1091)
.+++..-|.++...+++=..+..+ ...=.-....|+|++|+..+.....+++.. . ...+.+ =.=+...|
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~-~~~~~l----g~~~~~~~ 86 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-V-RAYIRK----ATAQIAVK 86 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H-HHHHHH----HHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-H-HHHHHH----HHHHHHHh
Confidence 344444488888777664433222 122233456799999998887642322221 1 122211 11124568
Q ss_pred CHHHHHHHHHhhc
Q 001367 89 DIAKALNILKKDL 101 (1091)
Q Consensus 89 ~~~~a~~~l~~~l 101 (1091)
++++|+..+++-+
T Consensus 87 ~~~~A~~~~~~al 99 (126)
T 3upv_A 87 EYASALETLDAAR 99 (126)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8889988888743
No 409
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.52 E-value=52 Score=18.81 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhhhhcC
Q 001367 5 NKDLVFLILQFLNEEG 20 (1091)
Q Consensus 5 ~~e~~~li~q~L~~~g 20 (1091)
-+||++||-||-+...
T Consensus 4 MkDvlql~qQy~qsh~ 19 (26)
T 1kdl_A 4 MKDVLRLIEQYVSSHT 19 (26)
T ss_dssp HHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4789999999876543
No 410
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=23.43 E-value=2.2e+02 Score=24.49 Aligned_cols=13 Identities=15% Similarity=-0.143 Sum_probs=6.2
Q ss_pred CCCHHHHHHHHHh
Q 001367 87 GHDIAKALNILKK 99 (1091)
Q Consensus 87 ~~~~~~a~~~l~~ 99 (1091)
.|++++|+..+++
T Consensus 65 ~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 65 LGLYEQALQSYSY 77 (142)
T ss_dssp TTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHH
Confidence 4444445444444
No 411
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=23.00 E-value=9.4 Score=31.84 Aligned_cols=35 Identities=9% Similarity=0.177 Sum_probs=26.3
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccC
Q 001367 25 AHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1091)
Q Consensus 25 ~~~l~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1091)
+..+-+|||+++++..+-..| +|+||++++.++.+
T Consensus 38 ~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 38 AIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 444556899998876666666 49999999998754
No 412
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.80 E-value=3.7e+02 Score=26.93 Aligned_cols=107 Identities=7% Similarity=0.085 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhhhcC-hhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhhhhhhhhh
Q 001367 6 KDLVFLILQFLNEEG-FTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFF 82 (1091)
Q Consensus 6 ~e~~~li~q~L~~~g-~~~s~~~l~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~l 82 (1091)
.++..++.+.+...| |.++...|++ +-..+ .....-....|++++|+..+..+....+.. ..+.+. ..++
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~l~-~a~~ 173 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA----TLTQLA-TAWV 173 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc----HHHHHH-HHHH
Confidence 344444546666666 8888888888 33344 233344567799999999988753332221 222221 1222
Q ss_pred hh-hcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcc
Q 001367 83 EA-LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1091)
Q Consensus 83 El-l~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1091)
.+ ...|++++|+.++++-+.- .+.++..+..|..++.
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHH
Confidence 33 3457788888888775443 3345555555554433
No 413
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=22.02 E-value=6.5e+02 Score=25.77 Aligned_cols=148 Identities=9% Similarity=0.077 Sum_probs=75.4
Q ss_pred CceEEEEEecCCeEEEEecCCC---Cc-eeeecCCCCcEEEEEEcCCCCEEEEEecCCCCceEEEE---EecCC------
Q 001367 498 NIHFIFSISVDGKIKAWLYDSL---GA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE---WNESE------ 564 (1091)
Q Consensus 498 ~~~~l~s~~~dg~i~iwd~~~~---~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i---wd~~~------ 564 (1091)
+..++++.+.+|.|+--.+... .. ...+. .+..+..+........++..+. .|.++- +++..
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~----~Gr~~~~~~~elp~~~r~a~ 78 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTN----KGNYLYCPVHELPDIRWKDL 78 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEET----TSEEEEEEGGGSCBCCTTSC
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEEC----CCEEEEEEHHHCcCCCCCCC
Confidence 3467888999999987654321 11 11122 2234444444444455555544 333443 33322
Q ss_pred ceeeEEEecccccccceEEE-EEcC--CCCEEEEEeCCCeEEEEECCCC------eeEEEEeCCCCCCCCceEEEccCCC
Q 001367 565 GAIKRTYQGLQLQHNSVSVV-HFDT--AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGT 635 (1091)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~v-~~~~--~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~ 635 (1091)
|.++..+-... ....|..+ .... ++.+++.++.+|.++...+... .-+..+..... ..+..+....+..
T Consensus 79 G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~ 156 (323)
T 1wp5_A 79 GQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMN 156 (323)
T ss_dssp CEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCS
T ss_pred CcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCC
Confidence 22211111111 12345544 3332 2568899999999999876432 22222222222 2344444444556
Q ss_pred EEEEEECCCeEEEEECC
Q 001367 636 LLAVIANENRIKILETP 652 (1091)
Q Consensus 636 ~l~~~~~dg~i~iwd~~ 652 (1091)
.++..+.+|.+..+...
T Consensus 157 ~i~l~T~~G~~irf~~~ 173 (323)
T 1wp5_A 157 ELFLVTHNGYALWFDES 173 (323)
T ss_dssp EEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCcEEEEEHH
Confidence 67788888888777665
No 414
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=21.69 E-value=58 Score=31.82 Aligned_cols=90 Identities=10% Similarity=0.164 Sum_probs=48.9
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHhcCCChhHHHHHHHhcCcC---H---------HHHHHHhcc-CCCcCCccccchhhh
Q 001367 8 LVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGK---W---------EDVEQYLSS-FTKVDDNRYSTKIYF 74 (1091)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~l~~Es~~~~~~~~~~~~i~~g~---w---------~~~~~~l~~-~~~~~~~~~~~~~~~ 74 (1091)
+++-+++||++.|+. +=+=+-+|-.-++..|++.+..|. + ..+-.+|+. +..+++..+. +
T Consensus 40 iv~~~i~~i~~~gl~---eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~va~lLK~fLreLPePLl~----~ 112 (229)
T 3iug_A 40 VLQSCTAFIERYGIV---DGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLT----Y 112 (229)
T ss_dssp HHHHHHHHHHHHCCS---TTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHHHHHHHHHHHHCSSCTTC----T
T ss_pred HHHHHHHHHHHcCCC---CCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchHHHHHHHHHHHHHCCCCCcC----H
Confidence 567778899988862 222223333335888888887763 1 223333332 2333333322 2
Q ss_pred hhhhhhhhhhhcCCCHHHHHHHHHhhccccC
Q 001367 75 EIRKQNFFEALDGHDIAKALNILKKDLKDFA 105 (1091)
Q Consensus 75 ~i~~q~~lEll~~~~~~~a~~~l~~~l~~~~ 105 (1091)
.+| ..|++.....+.++.+..++.-+.-|.
T Consensus 113 ~ly-~~~~~~~~~~~~~~~~~~l~~ll~~LP 142 (229)
T 3iug_A 113 QLY-EKFSDAVSAATDEERLIKIHDVIQQLP 142 (229)
T ss_dssp TTH-HHHHHHHTSSSHHHHHHHHHHHHTTSC
T ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 333 346666666666666777776665553
No 415
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=21.47 E-value=6.7e+02 Score=25.68 Aligned_cols=197 Identities=10% Similarity=0.059 Sum_probs=97.9
Q ss_pred eEEEecCCCCEEEEEeCCeEEEEEcc---------CceeEEEe-c-CCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEe
Q 001367 805 PCFALSKNDAYLFSASGGVISLYIVM---------TFKTILTI-M-PPSPTATSLAFNPH--DNNVIAIGMDDSTILIYN 871 (1091)
Q Consensus 805 ~~l~~s~dg~~la~~~dg~i~iwd~~---------~~~~~~~~-~-~~~~~i~~l~~s~~--~~~~la~g~~dg~i~iwd 871 (1091)
..+..+.....++..+.|.+.-+... .|..+..+ . .....|.++..-++ ++.+++..+.+|.++-..
T Consensus 43 ~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~ 122 (323)
T 1wp5_A 43 AMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTE 122 (323)
T ss_dssp EEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEE
T ss_pred EEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeE
Confidence 33344445555555557876555542 23322221 1 12334555433231 256788899999999988
Q ss_pred ccCc--------ceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce----ee-eeeeeccCCCcCCCCCc
Q 001367 872 ARSS--------EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI----QT-CRSLQTPDGVMTLAPSE 938 (1091)
Q Consensus 872 ~~~~--------~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~----~~-~~~~~~~~~~~~~~~~i 938 (1091)
+... .....+... +.+..+....+...++..+.+|.+..++...-.. .. .+.+....+ ..|
T Consensus 123 l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~-----d~V 196 (323)
T 1wp5_A 123 LKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEG-----DYI 196 (323)
T ss_dssp GGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTT-----CCE
T ss_pred HHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCC-----CEE
Confidence 7532 222233322 5666665555556777888999888887754111 01 111222111 235
Q ss_pred eEEEEcCCCC--EEEEEecCeEEEEEcCCcce-------eeee--ecCCccCEEEEEEeeCCCEEEEEEcCCcEEEEeCC
Q 001367 939 THIQFHKDQT--RFLLVHETHLAIYEAEELTC-------LKQW--FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1007 (1091)
Q Consensus 939 ~~l~fs~dg~--~la~~~d~~i~vwd~~~~~~-------~~~~--~~~h~~~v~~v~fs~dg~~l~t~~~dg~v~iwd~~ 1007 (1091)
.++..-+++. .++++..|..+..++..-.. +... .......+..+....++..++..+..|.+.-..+.
T Consensus 197 v~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 197 VSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred EEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 5554434444 44447777777776653211 1111 11112244433333334445555666666555544
No 416
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=21.18 E-value=2.3e+02 Score=23.26 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=46.8
Q ss_pred HHHHhhhhcChhHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCC-ccccchhhhhhhhhhhhhh
Q 001367 11 LILQFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDD-NRYSTKIYFEIRKQNFFEA 84 (1091)
Q Consensus 11 li~q~L~~~g~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~-~~~~~~~~~~i~~q~~lEl 84 (1091)
+-..++...-|.++...+++=.....+ ...-.-....|+|++|+.++........ ..........++-..-.-+
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 89 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH
Confidence 333344444477777777654332221 1222334557999999999876422211 1000000011222222223
Q ss_pred hcCCCHHHHHHHHHhhcc
Q 001367 85 LDGHDIAKALNILKKDLK 102 (1091)
Q Consensus 85 l~~~~~~~a~~~l~~~l~ 102 (1091)
...|++++|+..+++-+.
T Consensus 90 ~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 90 FKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 468999999999987544
No 417
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=21.09 E-value=6.7e+02 Score=25.51 Aligned_cols=156 Identities=9% Similarity=0.127 Sum_probs=84.8
Q ss_pred CeeEEE-ecCCCCEEEEEeCCeEEEEEccCc---------eeE---EEecCCCCCeEEEEEcCC--CCcEEEEEeCCCeE
Q 001367 803 AVPCFA-LSKNDAYLFSASGGVISLYIVMTF---------KTI---LTIMPPSPTATSLAFNPH--DNNVIAIGMDDSTI 867 (1091)
Q Consensus 803 ~v~~l~-~s~dg~~la~~~dg~i~iwd~~~~---------~~~---~~~~~~~~~i~~l~~s~~--~~~~la~g~~dg~i 867 (1091)
.+..+. .+.....++....|.+.-+....- ..+ -.+. ....|.++...++ +..+|+..+..|.+
T Consensus 48 ~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~ 126 (312)
T 1suu_A 48 EIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKI 126 (312)
T ss_dssp CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred EEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeE
Confidence 343433 344444444555688766655321 111 0122 2334555433321 35577888999999
Q ss_pred EEEeccC-------cceeeeeccccCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce----eee-eeeeccCCCcCCC
Q 001367 868 LIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI----QTC-RSLQTPDGVMTLA 935 (1091)
Q Consensus 868 ~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~i~vwd~~~~~~----~~~-~~~~~~~~~~~~~ 935 (1091)
+...+.. |.....+.. .+.+..+....+...++..+.+|.+..+..+.-.. ... ..+....+
T Consensus 127 kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~----- 200 (312)
T 1suu_A 127 ARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG----- 200 (312)
T ss_dssp EEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT-----
T ss_pred EEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC-----
Confidence 9887743 222333443 45676666655566788889999998888764111 111 12222221
Q ss_pred CCceEEEEcCCCCEEEE-EecCeEEEEEcCC
Q 001367 936 PSETHIQFHKDQTRFLL-VHETHLAIYEAEE 965 (1091)
Q Consensus 936 ~~i~~l~fs~dg~~la~-~~d~~i~vwd~~~ 965 (1091)
..+..+..-.++..+++ +..|.....++..
T Consensus 201 d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 201 DLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 24555555445554444 7788888887754
No 418
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=20.39 E-value=66 Score=25.30 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhhcChhHHHHHHHHhcCCChh
Q 001367 6 KDLVFLILQFLNEEGFTESAHMLERESRFYFD 37 (1091)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~l~~Es~~~~~ 37 (1091)
.++.+-|+++|++.| .++..|-+|-|++-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 467778889999999 889999999999764
Done!