Query 001368
Match_columns 1091
No_of_seqs 172 out of 214
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 23:01:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1822 Uncharacterized conser 100.0 3E-159 7E-164 1465.2 78.6 1051 12-1084 1-1201(2067)
2 KOG1822 Uncharacterized conser 99.5 1.8E-09 4E-14 138.2 50.5 842 119-1084 66-997 (2067)
3 KOG2171 Karyopherin (importin) 98.6 0.007 1.5E-07 77.1 68.2 815 47-1045 66-1009(1075)
4 KOG1824 TATA-binding protein-i 98.3 0.029 6.4E-07 70.1 55.2 896 30-1080 17-1040(1233)
5 KOG1824 TATA-binding protein-i 98.3 0.031 6.8E-07 69.8 55.0 388 75-573 184-620 (1233)
6 PF12348 CLASP_N: CLASP N term 98.1 0.00012 2.7E-09 79.3 19.0 130 125-260 72-205 (228)
7 KOG2171 Karyopherin (importin) 98.0 0.067 1.5E-06 68.6 40.8 431 65-545 37-546 (1075)
8 KOG2023 Nuclear transport rece 97.8 0.005 1.1E-07 74.1 24.1 308 124-467 376-709 (885)
9 PF01602 Adaptin_N: Adaptin N 97.7 0.00036 7.9E-09 84.7 13.9 218 819-1056 72-313 (526)
10 PF01602 Adaptin_N: Adaptin N 97.6 0.066 1.4E-06 65.2 31.9 408 33-527 90-504 (526)
11 PRK13800 putative oxidoreducta 97.6 0.0096 2.1E-07 77.6 25.3 129 90-259 613-741 (897)
12 KOG1248 Uncharacterized conser 97.5 0.7 1.5E-05 59.9 55.2 771 103-1088 93-914 (1176)
13 PRK09687 putative lyase; Provi 97.4 0.0082 1.8E-07 67.8 19.2 154 75-258 64-218 (280)
14 PRK09687 putative lyase; Provi 97.2 0.0072 1.6E-07 68.2 16.1 162 62-260 88-249 (280)
15 KOG0915 Uncharacterized conser 97.2 0.43 9.3E-06 62.9 31.8 422 11-466 812-1324(1702)
16 PF10508 Proteasom_PSMB: Prote 97.1 0.34 7.3E-06 59.4 29.1 279 125-453 57-370 (503)
17 COG5181 HSH155 U2 snRNP splice 97.0 0.17 3.7E-06 61.0 24.2 355 57-438 511-936 (975)
18 COG5181 HSH155 U2 snRNP splice 96.8 0.76 1.6E-05 55.7 27.7 322 80-453 296-637 (975)
19 TIGR02270 conserved hypothetic 96.7 0.048 1E-06 64.8 17.1 118 105-259 88-205 (410)
20 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.0088 1.9E-07 56.9 8.8 94 163-260 2-95 (97)
21 KOG1943 Beta-tubulin folding c 96.5 2.8 6.1E-05 54.1 31.1 431 10-505 109-616 (1133)
22 KOG0213 Splicing factor 3b, su 96.5 1.6 3.5E-05 54.0 27.7 334 77-438 728-1131(1172)
23 PRK13800 putative oxidoreducta 96.4 0.064 1.4E-06 70.1 17.6 158 68-259 688-865 (897)
24 PF12348 CLASP_N: CLASP N term 96.4 0.055 1.2E-06 58.7 14.0 173 40-221 25-208 (228)
25 PTZ00429 beta-adaptin; Provisi 96.3 0.2 4.3E-06 63.8 20.4 222 819-1059 98-346 (746)
26 PF10508 Proteasom_PSMB: Prote 96.3 0.84 1.8E-05 56.0 25.3 187 44-244 60-259 (503)
27 PLN03200 cellulose synthase-in 96.2 2 4.3E-05 59.9 29.8 190 64-261 362-559 (2102)
28 PLN03200 cellulose synthase-in 96.2 1.7 3.7E-05 60.5 28.7 334 67-471 533-882 (2102)
29 KOG1241 Karyopherin (importin) 96.1 5.9 0.00013 49.7 34.0 180 77-260 102-287 (859)
30 PTZ00429 beta-adaptin; Provisi 96.1 6.9 0.00015 50.3 31.9 160 79-260 46-207 (746)
31 PF05004 IFRD: Interferon-rela 96.0 3.5 7.5E-05 47.5 26.6 228 117-366 54-305 (309)
32 PF05004 IFRD: Interferon-rela 95.7 0.76 1.6E-05 52.8 19.8 138 124-264 104-260 (309)
33 KOG1242 Protein containing ada 95.7 5.8 0.00013 48.7 27.7 333 75-448 106-443 (569)
34 PF13251 DUF4042: Domain of un 95.7 0.11 2.4E-06 55.1 11.9 156 81-262 2-175 (182)
35 KOG1240 Protein kinase contain 95.6 2.3 5E-05 55.4 24.7 277 145-444 423-720 (1431)
36 KOG1241 Karyopherin (importin) 95.5 5.9 0.00013 49.7 26.9 337 119-477 341-693 (859)
37 KOG0212 Uncharacterized conser 95.1 11 0.00025 45.8 28.3 366 57-453 35-410 (675)
38 PF12755 Vac14_Fab1_bd: Vacuol 94.3 0.26 5.7E-06 46.9 9.1 85 125-211 5-89 (97)
39 PF12717 Cnd1: non-SMC mitotic 94.1 0.29 6.3E-06 51.5 10.0 92 160-262 1-93 (178)
40 PF13646 HEAT_2: HEAT repeats; 93.8 0.31 6.6E-06 44.3 8.4 86 67-172 2-88 (88)
41 cd00020 ARM Armadillo/beta-cat 93.8 0.13 2.8E-06 48.9 6.1 109 148-260 8-119 (120)
42 PF12460 MMS19_C: RNAPII trans 93.7 20 0.00044 42.9 32.2 223 211-466 172-411 (415)
43 PF13513 HEAT_EZ: HEAT-like re 93.6 0.048 1E-06 45.7 2.3 54 205-259 2-55 (55)
44 KOG0166 Karyopherin (importin) 93.5 2.9 6.3E-05 50.8 17.7 279 149-460 68-362 (514)
45 PF12719 Cnd3: Nuclear condens 93.4 6.1 0.00013 45.1 19.8 110 150-265 30-147 (298)
46 PF12460 MMS19_C: RNAPII trans 93.4 3.1 6.6E-05 49.8 18.0 210 48-262 173-395 (415)
47 PF13646 HEAT_2: HEAT repeats; 93.2 0.89 1.9E-05 41.2 10.2 85 150-257 2-88 (88)
48 PF12074 DUF3554: Domain of un 93.1 21 0.00046 41.3 25.0 71 144-219 19-90 (339)
49 KOG0213 Splicing factor 3b, su 92.3 40 0.00087 42.6 33.6 327 79-454 490-833 (1172)
50 KOG0211 Protein phosphatase 2A 92.3 26 0.00057 45.0 24.5 338 79-460 290-633 (759)
51 KOG1820 Microtubule-associated 91.9 7.5 0.00016 50.1 19.2 193 50-260 242-442 (815)
52 KOG2023 Nuclear transport rece 91.9 3.5 7.6E-05 50.8 15.3 236 12-262 458-733 (885)
53 KOG4535 HEAT and armadillo rep 91.8 27 0.00058 42.1 21.7 138 121-260 11-178 (728)
54 COG5215 KAP95 Karyopherin (imp 91.7 41 0.00089 41.4 31.4 347 101-467 319-729 (858)
55 PF04826 Arm_2: Armadillo-like 91.5 2.8 6.1E-05 46.9 13.5 147 872-1069 49-198 (254)
56 PF13513 HEAT_EZ: HEAT-like re 91.5 0.25 5.4E-06 41.4 4.0 55 120-174 1-55 (55)
57 KOG0212 Uncharacterized conser 91.0 13 0.00029 45.3 18.6 144 884-1066 81-226 (675)
58 PF02985 HEAT: HEAT repeat; I 90.9 0.47 1E-05 35.3 4.5 30 421-450 1-30 (31)
59 PF08506 Cse1: Cse1; InterPro 90.9 19 0.00042 42.5 20.2 197 55-256 128-370 (370)
60 KOG0915 Uncharacterized conser 90.7 80 0.0017 43.1 30.2 345 47-463 1064-1442(1702)
61 cd00020 ARM Armadillo/beta-cat 90.6 0.99 2.1E-05 42.7 7.8 108 104-218 8-119 (120)
62 PF12717 Cnd1: non-SMC mitotic 89.5 2.9 6.3E-05 44.0 10.8 90 120-220 2-93 (178)
63 COG1413 FOG: HEAT repeat [Ener 89.4 12 0.00026 42.9 16.8 170 40-261 27-209 (335)
64 TIGR02270 conserved hypothetic 89.3 6.9 0.00015 46.8 14.9 147 67-258 89-235 (410)
65 KOG4653 Uncharacterized conser 89.2 28 0.0006 44.6 20.1 136 128-264 828-967 (982)
66 KOG1248 Uncharacterized conser 88.6 1E+02 0.0022 41.2 24.9 186 119-329 711-907 (1176)
67 KOG1060 Vesicle coat complex A 88.5 85 0.0018 40.2 30.7 296 143-469 104-478 (968)
68 KOG2259 Uncharacterized conser 88.2 27 0.00059 43.5 18.6 248 63-345 136-456 (823)
69 PF02985 HEAT: HEAT repeat; I 87.3 0.97 2.1E-05 33.6 3.9 29 1009-1037 1-29 (31)
70 KOG2259 Uncharacterized conser 86.1 18 0.0004 44.9 15.7 61 197-262 380-440 (823)
71 KOG1062 Vesicle coat complex A 86.0 1.2E+02 0.0025 39.1 28.5 325 61-442 216-574 (866)
72 KOG2160 Armadillo/beta-catenin 85.5 22 0.00047 41.4 15.4 85 388-474 92-176 (342)
73 PF12719 Cnd3: Nuclear condens 84.9 28 0.0006 39.8 16.1 144 67-220 26-182 (298)
74 COG5096 Vesicle coat complex, 84.6 21 0.00046 45.6 16.0 121 82-221 36-158 (757)
75 KOG1820 Microtubule-associated 83.7 31 0.00067 44.8 17.1 94 142-244 366-460 (815)
76 KOG1525 Sister chromatid cohes 83.6 63 0.0014 44.0 20.3 198 15-220 96-330 (1266)
77 PF00514 Arm: Armadillo/beta-c 83.3 2 4.3E-05 33.9 4.3 30 419-448 11-40 (41)
78 KOG1242 Protein containing ada 82.9 77 0.0017 39.4 19.2 177 124-327 272-451 (569)
79 COG5096 Vesicle coat complex, 81.6 52 0.0011 42.3 17.7 94 819-917 85-196 (757)
80 KOG2025 Chromosome condensatio 81.6 51 0.0011 41.6 16.9 165 81-257 22-189 (892)
81 PF03378 CAS_CSE1: CAS/CSE pro 81.2 28 0.0006 42.2 14.8 254 51-324 13-276 (435)
82 PF08167 RIX1: rRNA processing 81.0 26 0.00055 36.6 12.7 81 855-937 78-164 (165)
83 PF11698 V-ATPase_H_C: V-ATPas 80.9 4.9 0.00011 39.8 6.9 72 377-449 43-115 (119)
84 KOG1949 Uncharacterized conser 80.6 33 0.00072 43.0 14.8 130 124-260 192-330 (1005)
85 KOG1059 Vesicle coat complex A 80.5 1.3E+02 0.0029 38.2 19.9 117 820-945 103-235 (877)
86 KOG1240 Protein kinase contain 79.6 36 0.00079 45.1 15.4 212 40-260 483-724 (1431)
87 smart00638 LPD_N Lipoprotein N 79.6 1.6E+02 0.0034 36.8 21.3 113 43-179 313-429 (574)
88 PF10363 DUF2435: Protein of u 79.2 9.6 0.00021 36.0 8.0 69 189-260 3-71 (92)
89 KOG2956 CLIP-associating prote 78.9 1.1E+02 0.0024 37.1 18.0 153 97-260 318-476 (516)
90 PF08389 Xpo1: Exportin 1-like 78.2 19 0.0004 35.8 10.4 128 78-214 1-148 (148)
91 COG1413 FOG: HEAT repeat [Ener 77.6 8.5 0.00018 44.2 8.8 92 146-260 42-134 (335)
92 PF11865 DUF3385: Domain of un 76.9 23 0.00049 36.9 10.8 110 63-176 9-157 (160)
93 PF11698 V-ATPase_H_C: V-ATPas 76.8 9 0.00019 38.0 7.3 72 102-176 42-115 (119)
94 KOG2956 CLIP-associating prote 76.8 63 0.0014 39.1 15.2 154 145-328 327-485 (516)
95 KOG0567 HEAT repeat-containing 76.6 45 0.00098 37.5 13.2 157 65-260 68-248 (289)
96 KOG0166 Karyopherin (importin) 76.3 13 0.00028 45.4 9.9 194 65-262 195-394 (514)
97 KOG2025 Chromosome condensatio 75.7 80 0.0017 40.0 16.1 127 126-258 105-256 (892)
98 KOG1949 Uncharacterized conser 75.6 60 0.0013 40.9 15.0 183 65-267 167-372 (1005)
99 smart00638 LPD_N Lipoprotein N 75.6 54 0.0012 40.9 15.6 106 124-255 464-572 (574)
100 COG5218 YCG1 Chromosome conden 75.5 84 0.0018 38.9 15.9 159 80-252 26-190 (885)
101 KOG4653 Uncharacterized conser 73.5 61 0.0013 41.8 14.7 142 77-220 818-965 (982)
102 PF08064 UME: UME (NUC010) dom 72.9 26 0.00057 33.9 9.4 71 159-237 27-97 (107)
103 KOG2933 Uncharacterized conser 72.6 27 0.0006 40.0 10.6 118 87-215 113-230 (334)
104 PF13251 DUF4042: Domain of un 72.3 42 0.0009 35.8 11.5 170 20-221 5-176 (182)
105 KOG1020 Sister chromatid cohes 70.4 4.3E+02 0.0094 36.7 27.5 124 128-260 797-920 (1692)
106 KOG2032 Uncharacterized conser 70.4 42 0.0009 40.7 11.9 104 117-221 269-373 (533)
107 KOG1991 Nuclear transport rece 69.7 1.5E+02 0.0032 39.0 17.0 137 82-221 389-534 (1010)
108 PF10363 DUF2435: Protein of u 69.4 45 0.00097 31.6 9.8 72 147-221 3-74 (92)
109 KOG1078 Vesicle coat complex C 69.3 1.4E+02 0.0031 38.3 16.4 70 972-1044 249-318 (865)
110 PF01347 Vitellogenin_N: Lipop 69.2 3.1E+02 0.0066 34.5 24.2 219 43-321 349-587 (618)
111 COG5116 RPN2 26S proteasome re 69.2 13 0.00028 45.4 7.4 81 854-942 595-675 (926)
112 COG5218 YCG1 Chromosome conden 68.0 2.6E+02 0.0056 35.0 17.6 48 159-211 144-191 (885)
113 KOG1077 Vesicle coat complex A 66.1 3.7E+02 0.0079 34.5 18.7 82 987-1072 311-398 (938)
114 KOG1061 Vesicle coat complex A 63.4 58 0.0013 41.4 11.8 176 855-1041 131-312 (734)
115 PF12074 DUF3554: Domain of un 63.4 2E+02 0.0043 33.4 15.8 184 865-1057 43-254 (339)
116 PF14222 MOR2-PAG1_N: Cell mor 63.3 3.9E+02 0.0085 33.5 28.8 213 232-467 222-517 (552)
117 KOG2062 26S proteasome regulat 62.7 13 0.00027 46.8 5.9 102 149-262 6-112 (929)
118 PRK04330 hypothetical protein; 61.7 39 0.00084 31.8 7.5 70 820-911 7-83 (88)
119 PF08167 RIX1: rRNA processing 61.6 1.6E+02 0.0034 30.8 13.1 122 105-232 27-158 (165)
120 PF03685 UPF0147: Uncharacteri 61.3 37 0.0008 31.7 7.3 69 820-910 4-79 (85)
121 PF12530 DUF3730: Protein of u 61.2 2.6E+02 0.0056 30.8 20.1 195 30-247 9-218 (234)
122 KOG0392 SNF2 family DNA-depend 60.9 69 0.0015 42.9 12.0 163 87-260 754-924 (1549)
123 KOG2022 Nuclear transport rece 60.5 2.1E+02 0.0046 37.3 15.8 155 305-469 438-596 (982)
124 KOG0211 Protein phosphatase 2A 60.4 4.4E+02 0.0096 34.3 19.1 129 122-260 495-624 (759)
125 smart00185 ARM Armadillo/beta- 60.1 11 0.00023 28.9 3.2 29 420-448 12-40 (41)
126 PF05918 API5: Apoptosis inhib 59.7 4.5E+02 0.0097 33.0 21.3 139 103-260 20-161 (556)
127 PF12830 Nipped-B_C: Sister ch 58.5 1.8E+02 0.0039 31.0 13.2 125 61-192 6-137 (187)
128 cd00256 VATPase_H VATPase_H, r 58.5 4.1E+02 0.0089 32.3 20.5 119 141-261 47-173 (429)
129 PF08064 UME: UME (NUC010) dom 58.0 64 0.0014 31.3 8.8 73 105-180 13-87 (107)
130 PF00514 Arm: Armadillo/beta-c 58.0 17 0.00037 28.5 4.1 29 1008-1036 12-40 (41)
131 PF08713 DNA_alkylation: DNA a 57.8 1.6E+02 0.0035 31.3 13.0 154 75-260 28-183 (213)
132 cd00256 VATPase_H VATPase_H, r 57.2 19 0.00041 43.4 6.0 83 82-176 341-425 (429)
133 PF13001 Ecm29: Proteasome sta 54.8 29 0.00064 42.7 7.4 119 143-264 315-446 (501)
134 KOG0414 Chromosome condensatio 54.6 2.5E+02 0.0054 37.8 15.4 115 145-262 310-429 (1251)
135 PF08389 Xpo1: Exportin 1-like 53.7 61 0.0013 32.0 8.3 127 306-444 3-148 (148)
136 KOG1020 Sister chromatid cohes 53.6 3.1E+02 0.0066 38.0 16.1 114 119-246 829-942 (1692)
137 PF12765 Cohesin_HEAT: HEAT re 52.6 20 0.00043 28.9 3.6 41 991-1031 1-41 (42)
138 KOG2062 26S proteasome regulat 50.5 59 0.0013 41.2 8.7 96 152-262 524-619 (929)
139 smart00802 UME Domain in UVSB 50.5 97 0.0021 30.2 8.7 72 106-180 14-87 (107)
140 KOG1059 Vesicle coat complex A 50.1 2.8E+02 0.006 35.5 14.2 103 125-240 318-421 (877)
141 KOG2933 Uncharacterized conser 48.3 2.1E+02 0.0046 33.1 12.0 159 92-260 73-233 (334)
142 PF09450 DUF2019: Domain of un 48.0 4.2 9.1E-05 39.4 -1.0 36 422-460 49-84 (106)
143 PF14500 MMS19_N: Dos2-interac 47.6 3.8E+02 0.0083 30.2 14.2 174 79-263 13-202 (262)
144 PF01347 Vitellogenin_N: Lipop 47.1 4.1E+02 0.0089 33.3 16.0 107 124-256 508-617 (618)
145 smart00185 ARM Armadillo/beta- 46.5 29 0.00063 26.4 3.7 29 1009-1037 13-41 (41)
146 COG5116 RPN2 26S proteasome re 46.1 60 0.0013 40.0 7.6 97 150-261 519-615 (926)
147 PF11865 DUF3385: Domain of un 45.6 3E+02 0.0065 28.6 12.1 43 145-192 8-51 (160)
148 COG5240 SEC21 Vesicle coat com 45.5 7.2E+02 0.016 31.3 19.2 50 397-448 505-554 (898)
149 COG5240 SEC21 Vesicle coat com 45.3 7.3E+02 0.016 31.2 25.6 361 61-531 19-390 (898)
150 KOG1517 Guanine nucleotide bin 45.2 2.7E+02 0.0058 37.1 13.4 50 82-137 617-673 (1387)
151 KOG1943 Beta-tubulin folding c 44.9 9.4E+02 0.02 32.4 39.9 141 77-220 353-501 (1133)
152 PF03224 V-ATPase_H_N: V-ATPas 43.6 1.6E+02 0.0034 33.8 10.6 118 391-518 69-197 (312)
153 PF03224 V-ATPase_H_N: V-ATPas 43.3 1.2E+02 0.0027 34.7 9.7 108 151-260 59-178 (312)
154 KOG4535 HEAT and armadillo rep 43.2 2.3E+02 0.005 34.6 11.6 137 81-221 12-181 (728)
155 PF06371 Drf_GBD: Diaphanous G 41.8 36 0.00078 35.5 4.7 59 201-260 127-186 (187)
156 PF01465 GRIP: GRIP domain; I 41.2 34 0.00074 28.2 3.4 33 228-260 3-35 (46)
157 PF14664 RICTOR_N: Rapamycin-i 40.7 1.3E+02 0.0028 35.7 9.5 67 987-1054 86-154 (371)
158 KOG1061 Vesicle coat complex A 40.6 1.2E+02 0.0025 38.8 9.3 104 145-260 84-188 (734)
159 PF08161 NUC173: NUC173 domain 39.8 62 0.0013 35.0 6.1 54 126-179 20-73 (198)
160 KOG0567 HEAT repeat-containing 39.6 6.3E+02 0.014 28.9 14.4 177 58-262 15-217 (289)
161 cd07064 AlkD_like_1 A new stru 39.5 5.3E+02 0.011 27.9 17.0 173 53-260 2-178 (208)
162 PF08569 Mo25: Mo25-like; Int 39.4 7E+02 0.015 29.3 22.1 143 145-321 123-284 (335)
163 KOG2759 Vacuolar H+-ATPase V1 39.3 62 0.0013 38.6 6.4 72 377-449 366-438 (442)
164 cd03572 ENTH_epsin_related ENT 39.3 2.9E+02 0.0064 27.7 10.2 86 131-220 19-120 (122)
165 smart00755 Grip golgin-97, Ran 38.1 48 0.001 27.4 3.8 32 228-260 2-33 (46)
166 KOG1837 Uncharacterized conser 37.8 2.5E+02 0.0054 38.8 12.0 112 64-180 1502-1615(1621)
167 smart00543 MIF4G Middle domain 37.4 3.7E+02 0.0079 27.9 11.5 125 24-153 40-167 (200)
168 COG2733 Predicted membrane pro 37.2 8E+02 0.017 29.4 17.7 198 31-260 106-329 (415)
169 smart00802 UME Domain in UVSB 36.2 2.5E+02 0.0055 27.4 9.1 69 396-466 32-101 (107)
170 PF04826 Arm_2: Armadillo-like 35.8 6.2E+02 0.013 28.5 13.4 115 355-473 92-207 (254)
171 KOG2011 Sister chromatid cohes 35.2 1.3E+03 0.028 31.3 20.2 133 116-265 297-439 (1048)
172 PF14222 MOR2-PAG1_N: Cell mor 35.1 75 0.0016 39.7 6.6 73 1001-1074 464-547 (552)
173 KOG1077 Vesicle coat complex A 34.8 1.1E+03 0.024 30.4 20.5 219 31-264 177-435 (938)
174 KOG1062 Vesicle coat complex A 34.7 1.2E+03 0.025 30.6 33.4 348 65-454 143-549 (866)
175 PF07571 DUF1546: Protein of u 33.8 1.7E+02 0.0038 27.5 7.4 61 159-221 18-80 (92)
176 KOG0414 Chromosome condensatio 32.1 1.5E+03 0.032 31.0 18.2 173 63-243 265-454 (1251)
177 PF10350 DUF2428: Putative dea 32.1 7.6E+02 0.016 27.6 13.9 76 863-939 166-251 (255)
178 cd03569 VHS_Hrs_Vps27p VHS dom 31.7 3.9E+02 0.0084 27.3 10.1 81 372-454 36-119 (142)
179 KOG1993 Nuclear transport rece 30.8 1.4E+03 0.03 30.1 18.0 278 42-346 374-666 (978)
180 KOG1991 Nuclear transport rece 30.2 1.5E+03 0.032 30.4 33.8 117 396-529 435-557 (1010)
181 KOG2160 Armadillo/beta-catenin 29.9 1.1E+02 0.0024 35.8 6.4 87 987-1074 98-195 (342)
182 COG5231 VMA13 Vacuolar H+-ATPa 29.3 86 0.0019 36.3 5.2 71 377-448 356-427 (432)
183 KOG1525 Sister chromatid cohes 28.9 6.8E+02 0.015 34.6 14.1 167 885-1062 142-316 (1266)
184 COG1698 Uncharacterized protei 28.8 2.3E+02 0.005 26.9 6.9 63 820-904 11-76 (93)
185 KOG0946 ER-Golgi vesicle-tethe 28.3 4.8E+02 0.01 33.9 11.6 182 868-1089 49-257 (970)
186 COG5098 Chromosome condensatio 27.9 8.4E+02 0.018 31.4 13.3 97 125-225 318-420 (1128)
187 PF13001 Ecm29: Proteasome sta 27.7 1.1E+03 0.023 29.3 14.9 131 124-260 339-487 (501)
188 KOG2002 TPR-containing nuclear 27.2 1.7E+03 0.036 30.0 16.8 167 70-256 520-726 (1018)
189 PF12783 Sec7_N: Guanine nucle 26.9 7.1E+02 0.015 25.6 14.1 68 120-193 87-157 (168)
190 PF02854 MIF4G: MIF4G domain; 26.4 4E+02 0.0088 27.5 9.7 61 80-142 101-163 (209)
191 KOG0413 Uncharacterized conser 25.8 2.6E+02 0.0056 36.9 8.8 124 122-260 947-1072(1529)
192 KOG1967 DNA repair/transcripti 25.5 3.4E+02 0.0074 35.7 9.9 114 140-255 902-1018(1030)
193 PF10521 DUF2454: Protein of u 25.3 7.7E+02 0.017 27.9 12.2 81 140-220 112-204 (282)
194 PF08623 TIP120: TATA-binding 24.5 2.3E+02 0.0049 30.0 7.0 59 199-261 36-94 (169)
195 PF08623 TIP120: TATA-binding 23.6 6.9E+02 0.015 26.5 10.4 112 78-193 40-165 (169)
196 COG5064 SRP1 Karyopherin (impo 23.3 1.8E+02 0.0038 34.1 6.2 80 356-437 219-302 (526)
197 PF12765 Cohesin_HEAT: HEAT re 23.0 1E+02 0.0022 24.8 3.2 41 212-255 1-41 (42)
198 PF12830 Nipped-B_C: Sister ch 22.9 1.9E+02 0.0042 30.7 6.4 57 985-1043 24-80 (187)
199 KOG1078 Vesicle coat complex C 22.7 1.8E+03 0.04 28.9 20.0 309 69-449 207-532 (865)
200 COG5215 KAP95 Karyopherin (imp 22.6 1.6E+03 0.036 28.4 41.1 181 75-260 104-291 (858)
201 KOG2213 Apoptosis inhibitor 5/ 22.5 1.4E+03 0.031 27.6 13.5 156 86-258 8-177 (460)
202 KOG0946 ER-Golgi vesicle-tethe 22.1 2.2E+02 0.0048 36.7 7.3 74 1000-1073 14-90 (970)
203 PF04118 Dopey_N: Dopey, N-ter 22.1 1.3E+03 0.028 26.9 16.4 122 128-258 119-251 (307)
204 PF10274 ParcG: Parkin co-regu 22.0 6.5E+02 0.014 27.0 9.9 102 118-222 51-167 (183)
205 PRK10803 tol-pal system protei 21.8 1.2E+03 0.025 26.3 13.7 128 56-196 85-245 (263)
206 PF08161 NUC173: NUC173 domain 21.3 1.9E+02 0.0041 31.3 5.9 58 906-966 19-76 (198)
207 smart00544 MA3 Domain in DAP-5 21.1 7.1E+02 0.015 23.6 9.4 77 185-264 32-111 (113)
208 KOG1517 Guanine nucleotide bin 21.0 1.2E+03 0.026 31.6 13.3 139 120-264 571-735 (1387)
209 PF05997 Nop52: Nucleolar prot 21.0 3.8E+02 0.0082 29.4 8.3 68 151-220 4-73 (217)
210 PF01603 B56: Protein phosphat 20.9 9.9E+02 0.022 28.7 12.5 135 82-221 235-372 (409)
211 KOG1293 Proteins containing ar 20.5 1.9E+03 0.04 28.2 17.0 109 125-245 438-550 (678)
No 1
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.1e-159 Score=1465.15 Aligned_cols=1051 Identities=32% Similarity=0.455 Sum_probs=915.5
Q ss_pred cccchhHHHHHHHHHhhhccCCCCchHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 001368 12 LSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGR 91 (1091)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~ 91 (1091)
+++++++++++|++++...|+ ||+|+|||++++++.++..+|+|++..|++++++|.+.+..++|||+|+|++.|+++
T Consensus 1 Ms~~~~l~~~e~s~~~~~~~k--~p~~~~e~l~~l~~~l~~~~ke~~l~tQ~~~~~~l~s~~~~~~~~p~rkL~s~~i~r 78 (2067)
T KOG1822|consen 1 MSLASLLLLNETSLVASPEQK--RPVFCLEWLRYLERNLNEEQKEDLLVTQLKLEQQLISRLTNGAGPPTRKLISVAIAR 78 (2067)
T ss_pred CCcchhhHhhHHHhhcchhhc--ccHHHHHHHHHHHhcCCcchhHHHHHHhHHHHHHHHHHHccCCCchhHHHHHHHHHH
Confidence 468999999999999998887 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 001368 92 IISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLL 171 (1091)
Q Consensus 92 l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L 171 (1091)
+|+.||++++|+++|.|++.+++++.+.|.++.+|..|+|++|+.+|+++++..+++++++.|+.|.|++..|.++|.++
T Consensus 79 l~~~gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~~~l 158 (2067)
T KOG1822|consen 79 LISNGDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIMITL 158 (2067)
T ss_pred HHhccchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999997665555555599999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCC-chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHH
Q 001368 172 QNALEGSGGSA-AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRD 250 (1091)
Q Consensus 172 ~kil~g~g~~~-~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~ 250 (1091)
.++++|+|+.. +...|++||| +.|+++.||++.||.||++|+.++.+.++|.+.++|+|+..++|||++|++++++|+
T Consensus 159 ~~~~~~~g~~s~~~~~~k~i~l-~~k~~lld~s~~v~iaa~rc~~a~s~~~~~~~~~Sele~~~s~cfk~~~~s~~~~r~ 237 (2067)
T KOG1822|consen 159 HNALKGMGGTSAATATHKAIRL-IAKNSLLDRSFNVKIAAARCLKAFSNLGGPGLGTSELETLASYCFKGIEISNSEVRC 237 (2067)
T ss_pred HHHHHHhccchHHHHHHHHHHH-HHhhhhhhhhHHHHHHhHHHHHHHHhhcCccccchhhhhhcceeeeeeccchHHHHH
Confidence 99999999655 6889999999 699999999999999999999999999766667999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCcCCCCCCCCCCC--CCChHHHHHHHhhhhhcc--------cCC-------CCcchhHHHHHH
Q 001368 251 AFAEALGSLLALGMNPQAQVQPKGKGPFPP--AKKLEGGLQRHLALPFTR--------ANG-------AKSKNMRVNLTL 313 (1091)
Q Consensus 251 a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~--~k~~e~~l~~~Ls~~f~r--------~~~-------~~~r~~R~Gv~~ 313 (1091)
++|+++|++++..+.|....++.+++|..+ .+..++.+. ....+|.+ +.+ ++.+++|+|++.
T Consensus 238 a~a~~~~~Lla~~~~~~s~~~~~~~g~~~pa~~~~~~~~L~-~~~~~fl~~~~~~~l~~~~~i~~~s~~~~~~~r~g~s~ 316 (2067)
T KOG1822|consen 238 AVAEFLGSLLALGMHPESAVQKAKKGPFVPAKDKNTREGLA-LSWSGFLRGGRIRFLKGDSEILVGSSPVMRDVRVGSSI 316 (2067)
T ss_pred HHHHHHHHHHhccCCchhhhhhcccCCCCCccchhHHHHHH-HHHHHHHhcchhhhhccchhheecccchhhhhhcchhH
Confidence 999999999998866666666666665443 344456553 44444444 331 456999999999
Q ss_pred HHHHHHHHhccccCCCCchhhHHHHHHHHHhcc--CCCc-----c-HHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhh
Q 001368 314 SWVYFLQAIRLKYFHPDSELQDYALQVMDMLRA--DIFV-----D-SHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQ 385 (1091)
Q Consensus 314 ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~--~~~~-----~-~~~r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~ 385 (1091)
||+.|++.+|..|++++ ...+-.|++++... +++. | ...|+|+.|++|++||.++||++|...+..++..
T Consensus 317 ~~v~~v~~~g~~~l~~~--~~a~~~~~~dl~~~~~~~~~~~~~~~~t~~r~~~~Fl~r~~Ig~~l~~~A~~~~~~~~~~~ 394 (2067)
T KOG1822|consen 317 CYVVFVQSLGLAWLEKN--LSAFRAHILDLVLLGEVPHETSEFSDATLSRYLISFLLRVTIGALLLEKAQALQCKEIVGL 394 (2067)
T ss_pred HHHHHHHHhhhhccchh--HHHHHhHHHhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999974 55555599998884 2332 2 2568999999999999999999998777766621
Q ss_pred c----c-----c------CC------CChhHHHHHHHHHHHHHHHhCCCchh----hHHHHHHHHHHHhcCCchHHHHHH
Q 001368 386 L----Q-----A------VD------ASPFMKIAALRTLSYTLKTLGEVPSE----FKEVLDSTVVAAVSHSSQLVRIEA 440 (1091)
Q Consensus 386 ~----~-----~------~~------~s~~~lv~aL~el~~Ll~~LGsa~~~----~~~~l~d~l~~ll~hps~svRi~A 440 (1091)
. . + .| .+.|..+++++++.+++.++|++... ...++.|..+..+.||..++|++|
T Consensus 395 ~~~~~~~~~~~~~~~se~~d~~~~~~~s~~~~v~~l~~l~s~~~gl~tt~~~~l~ds~l~i~~~~~~~l~~p~as~r~~a 474 (2067)
T KOG1822|consen 395 LSKYVTSLDADRESNSEKGDKLKEDLASQHLQVAALAELSSLSPGLGTTAPSLLPDSTLQILDLILTELRHPVASARLEA 474 (2067)
T ss_pred HHHHHhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 1 1 0 11 24588999999999999999997763 466799999999999999999999
Q ss_pred HHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhhccccCCcccchhhhhchHHHHHHHHHhh-cCCCCCccCCchhHHHHH
Q 001368 441 ALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFI-SPKLPLGYPARLPKLVLE 519 (1091)
Q Consensus 441 A~cLr~~~~a~P~~~~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~alAALl~~-~~~~pLgvp~~~~~~V~~ 519 (1091)
||||||++.++|.++++++++|+++++.+.++.+ ..++.+.|||+++|||+++ +..||+||||.++++||+
T Consensus 475 aw~Lrcll~~~P~~l~p~id~~~~~~e~~~kq~~--------s~~~~~sg~S~aiaaLl~~~~~~~plgIp~~k~~~v~~ 546 (2067)
T KOG1822|consen 475 AWLLRCLLNAMPSYLTPTIDRFLERLEHLFKQLR--------SSPEAVSGFSFAIAALLAGVVVSCPLGIPHAKGLKVLN 546 (2067)
T ss_pred HHHHHHHHhcCchhhhHHHHHHhccchhHHHHhh--------ccHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHH
Confidence 9999999999999999999999999888876542 2377888999999999999 999999999999999999
Q ss_pred HHHHHhhccCCChhhHHHHHHHHHHHHHHhhccCChhhHhhcHHHHHHHHHhhcCCCchhhh--hhccc---hhhHHHHH
Q 001368 520 VSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHII--KQHGD---LTSKICVL 594 (1091)
Q Consensus 520 ~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~~~~~Vk~hl~qLLlLWk~~l~~s~~~~~--~~~~e---~~~~L~~r 594 (1091)
+|++|||+++||++.+.+|+|+||+||++||+| ||+|+|+|+||+|+||||+|||++|+.| +.|+| |++.++.|
T Consensus 547 ~Aedllkt~aqnsr~s~~kt~~gWlLi~aLmtl-gpsv~k~~lprllLlWk~~f~rs~ke~ese~~rgdaFtwq~tl~~~ 625 (2067)
T KOG1822|consen 547 FAEDLLKTAAQNSRLSLAKTLAGWLLISALMTL-GPSVVKLQLPRLLLLWKNAFPRSPKELESEESRGDAFTWQLTLEGR 625 (2067)
T ss_pred HHHHHHHhhccChhHHHHHHHhhHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCcccccccccccchHHHHHHHHhh
Confidence 999999999999999999999999999999996 6899999999999999999999999875 44677 99999999
Q ss_pred HHHHHHHHHHHHhccCccccccchhhhhHHHHHHHHHHHHHH---HhhhhCCCCChhHHHHHHH--HHHHHhcCCCCCCC
Q 001368 595 STAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYIST---IAAKELPNIKPAMDIFIIR--TLIAYQSLPDPVSY 669 (1091)
Q Consensus 595 ~~AL~aL~sFL~~~lt~d~~~~~~ll~~~~~~L~~aL~~ls~---~~~~~~~~lk~~~~l~~~R--iLq~y~~L~~~~~~ 669 (1091)
++||+.|.+|..++ ++..+.+.. .+....+++++++++. ..+.|+..+|....++|.| .++.- +|.||..|
T Consensus 626 agaL~~m~~~~s~~--~~~~~e~~~-~k~~~p~~~~l~lls~v~~~lk~yg~~~~~sa~lvrIr~~l~e~l-~llp~~~~ 701 (2067)
T KOG1822|consen 626 AGALSYMKSFVSHK--PDSLTESIT-LKFLTPIECALSLLSQVPSVLKAYGNQLKRSALLVRIRAGLYELL-LLLPPSSY 701 (2067)
T ss_pred hhHHHHHHHHhccC--cchhhHHHH-HhcCCcHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-HhCCchhh
Confidence 99999999999986 555444432 3355567788777755 6779999999988888765 44433 35568899
Q ss_pred CCChHHHHHHHhhhcC--CC-CcccchhhhhhhcccCCcc-cCCCCCCCch--hHHhhhhh-cCCCCCCC----ccccc-
Q 001368 670 KSDHPQLIKLCTTPYR--DA-SACEESSCLRLLLDKRDAW-LGPWIPGRDW--FEDELCAF-QGGKDGLM----PCVWE- 737 (1091)
Q Consensus 670 ~~~~~~LL~~~v~~Fs--d~-~~~~~ss~l~sl~~~~D~~-lG~~l~~~d~--~e~~L~~~-~~~~d~~l----p~l~~- 737 (1091)
+.++.++++.++++|+ |+ ...+++++++++++.+|+. .|+|.+++|+ +|+++..+ .....+.+ -++|.
T Consensus 702 e~~l~~~lr~lvad~tm~dn~~~~ttt~ll~s~~~~~~~ii~g~~i~~t~~~~~e~q~~~~~~~i~~g~le~d~s~ll~~ 781 (2067)
T KOG1822|consen 702 EGSLTALLRKLVADLTMSDNLSANTTTELLRSLAFGDDSIITGPWIQATDHRSAEDQLLTPGSDIFSGALEEDLSSLLSL 781 (2067)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHhhhhhccCcccccChhhhhccchhHHHhhccCccccceeeeecCchhhhHH
Confidence 9999999999999998 55 4566788999999999998 9999999996 88885333 33333333 24542
Q ss_pred --cc-CCCCCCCCCchhHHHHHHHHHHHHhhcCCCchhHhHHHHHHHHHHHcccchhHHHHHHHHHHH--HHHHHHHHHH
Q 001368 738 --NE-VSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICV--GLLAGLKALL 812 (1091)
Q Consensus 738 --~~-~~~~p~p~p~~tsvVdasi~LF~~vFp~~~~k~q~s~LE~l~~~ik~~k~~~R~~Ai~vNv~~--All~aLk~~~ 812 (1091)
.. .+.+|+|+|+++++||+|++|||.+|||+++|||+|++||+.+|+++.|+. |+++|++|+++ |++++||+++
T Consensus 782 ~s~~g~~~~p~~lp~~ls~Idta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~-r~qsV~~~a~t~~al~s~lk~l~ 860 (2067)
T KOG1822|consen 782 ISAAGLSSVPYALPLALSLIDTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSA-RQQSVQVNAVTWQALLSALKYLA 860 (2067)
T ss_pred HHhhcccCCCCCCcchhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 345899999999999999999999999999999999999999999999998 99999999999 9999999999
Q ss_pred hhCC--CCCChHHHHHHHHHHHHHHhcCCcchHHHHHH--Hhhc---------------------ccccCCcchhHHHHH
Q 001368 813 NLRP--QTLGSEVLNSIQAIFLSILAEGDICASQRRAL--LLGD---------------------LTVVTDANYAGSIAL 867 (1091)
Q Consensus 813 ~~~~--~~l~~~v~~~~~~li~~~l~~~d~~~~~r~aa--~l~~---------------------lv~~~dp~~Ra~~aL 867 (1091)
+.+. ..++++|.+...+++.+.+..+++ ..||++ +++| +...+||..|.|+.+
T Consensus 861 e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p--~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghsl 938 (2067)
T KOG1822|consen 861 EFKGATSLGPEEVRSSALTLIVNSLINPNP--KLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSL 938 (2067)
T ss_pred hcccccccCHHHHHHHHHHHHhhhhccCCh--HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 9998 447899999999999999999886 466665 2222 234699999999999
Q ss_pred HHHHHHhhcCCcccccchhhHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHhccCCCCCch
Q 001368 868 AIGCIHRSAGGMALSSLVPATVSSISLLAKTSI-PGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVD 946 (1091)
Q Consensus 868 ALG~I~r~vGgmas~~~l~t~v~iL~sL~~Dp~-P~Vh~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~~ 946 (1091)
|+|||||||||++++||++|.|+|+++|++|+| |+||.|+||||++++|++|++|+.||++||.++.++++++++++++
T Consensus 939 alg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~e 1018 (2067)
T KOG1822|consen 939 ALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVE 1018 (2067)
T ss_pred HHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhh
Confidence 999999999999999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH------HHHHhhCCCCCCchh------hhHhhhc------cccCCCchhHHHHHhHHhhhcccCccchhh
Q 001368 947 LQQGVGRLIN------AIVAVLGPELAPGSI------FFSRCKV------SAWQCSSPKWSVRFTQQLVLFAPQAVSVHS 1008 (1091)
Q Consensus 947 ~~~~igr~l~------alI~~LGPeLq~~s~------~~~~~~~------~~~~~~~~~eai~clQqL~lFAP~~v~~~~ 1008 (1091)
++|++|||++ ++|+++|||||++.. .++.|+. ++.+..+++++|+|+||+|||||+|+|++.
T Consensus 1019 v~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~ 1098 (2067)
T KOG1822|consen 1019 VHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDS 1098 (2067)
T ss_pred hhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHH
Confidence 9999999999 999999999998873 4444433 222334479999999999999999999999
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHccCchhhh----------------------hhchHHHHHHhhccCCCHHHHH
Q 001368 1009 HVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVI----------------------EERIEGNLFHMLDEETDSEYVK 1066 (1091)
Q Consensus 1009 lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a~~v~----------------------~~~le~~Lf~~LD~e~d~~l~~ 1066 (1091)
+|+.||.+|+|+|..+|++++.|||||+||++.+|. +.|||+.+|+|||+|+|.++++
T Consensus 1099 lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~ 1178 (2067)
T KOG1822|consen 1099 LVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLK 1178 (2067)
T ss_pred HHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHH
Confidence 999999999999999999999999999999998764 2599999999999999999998
Q ss_pred ----HHH-HHhhhhccccccccc
Q 001368 1067 ----SYT-LCLAYFSSFYAFYLE 1084 (1091)
Q Consensus 1067 ----~~~-~~~~~~~~~~~~~~~ 1084 (1091)
++. ..+.++...++-|+.
T Consensus 1179 ~I~~tl~~~~~~~~~~~ls~Wl~ 1201 (2067)
T KOG1822|consen 1179 NILETLSRMLNSLADELLSSWLM 1201 (2067)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 233 366899999999985
No 2
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=1.8e-09 Score=138.24 Aligned_cols=842 Identities=23% Similarity=0.168 Sum_probs=478.4
Q ss_pred ChHhHHHHHHHHHHHHHHHhhHHhhcH-HHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 001368 119 EPQKVAGAAQCLGELYRQFGRRITSGL-LETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRF 197 (1091)
Q Consensus 119 sp~~~~aA~~cLG~l~~~~G~~l~s~~-~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~ 197 (1091)
-|.++ .+..|++.+|.. |+....-. -..|.-.+|=-+....+--..+...+.+..+..|..++ ...-|......|.
T Consensus 66 ~p~rk-L~s~~i~rl~~~-gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~-~~~edt~~if~~~ 142 (2067)
T KOG1822|consen 66 PPTRK-LISVAIARLISN-GDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIG-RGLEDTVQIFTKL 142 (2067)
T ss_pred chhHH-HHHHHHHHHHhc-cchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhc-chHHHHHHHHHHH
Confidence 45554 788999999998 87663221 11333344411114567777888889999998887773 2344544433333
Q ss_pred hccCcchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCC-cCC-CCC
Q 001368 198 AIVDKSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQA-QVQ-PKG 274 (1091)
Q Consensus 198 ~~~Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~-~~~-~~~ 274 (1091)
.-+.-++.++-+.+ -+.......+.-- .....+..--...-.+-+.+-.||.+.++|+..+--..- |.- ... .+-
T Consensus 143 ~k~n~s~~~~~i~~-~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~~-~~~~~Sele~~ 220 (2067)
T KOG1822|consen 143 VKTNESFVRQEIMI-TLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLGG-PGLGTSELETL 220 (2067)
T ss_pred HhhHHHHHHHHHHH-HHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhcC-ccccchhhhhh
Confidence 33334444444433 4444444321100 112222222222333444455599999999887552211 110 000 000
Q ss_pred CC--CCCC---CCC----hHHHHHHHhhhh---h---cccC-C----CCcchhHHHHHHHHHHHHHHhccccCCCCchhh
Q 001368 275 KG--PFPP---AKK----LEGGLQRHLALP---F---TRAN-G----AKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQ 334 (1091)
Q Consensus 275 k~--~~~~---~k~----~e~~l~~~Ls~~---f---~r~~-~----~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~ 334 (1091)
+. -+.. ... +.+.+..++..+ | .++. | ...+.+|-|....|..|++.-...|+....+..
T Consensus 221 ~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~~~~~s~~~~~~~g~~~pa~~~~~~~~L~~~~~~fl~~~~~~~l~~~~~i~ 300 (2067)
T KOG1822|consen 221 ASYCFKGIEISNSEVRCAVAEFLGSLLALGMHPESAVQKAKKGPFVPAKDKNTREGLALSWSGFLRGGRIRFLKGDSEIL 300 (2067)
T ss_pred cceeeeeeccchHHHHHHHHHHHHHHHhccCCchhhhhhcccCCCCCccchhHHHHHHHHHHHHHhcchhhhhccchhhe
Confidence 00 0000 000 012222233322 1 1111 1 123667778888898888876554554332223
Q ss_pred HHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCc
Q 001368 335 DYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVP 414 (1091)
Q Consensus 335 ~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~ 414 (1091)
.|-.++++.+..... .|...+++. +...|. . .-+.+......=+..+|+.+
T Consensus 301 ~~s~~~~~~~r~g~s------~~~v~~v~~-----------------~g~~~l----~--~~~~a~~~~~~dl~~~~~~~ 351 (2067)
T KOG1822|consen 301 VGSSPVMRDVRVGSS------ICYVVFVQS-----------------LGLAWL----E--KNLSAFRAHILDLVLLGEVP 351 (2067)
T ss_pred ecccchhhhhhcchh------HHHHHHHHH-----------------hhhhcc----c--hhHHHHHhHHHhhhhcccCc
Confidence 333334443322111 222222222 222111 1 12233333334445566778
Q ss_pred hhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhhccccCCcccchhhhhchHHHH
Q 001368 415 SEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATV 494 (1091)
Q Consensus 415 ~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~a 494 (1091)
.+..+...+.+.+-+.|--..+++.+....++...++|.++ .+++...+.++.+.+..+ ++++..+...-..|+....
T Consensus 352 ~~~~~~~~~t~~r~~~~Fl~r~~Ig~~l~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~s-e~~d~~~~~~~s~~~~v~~ 429 (2067)
T KOG1822|consen 352 HETSEFSDATLSRYLISFLLRVTIGALLLEKAQALQCKEIV-GLLSKYVTSLDADRESNS-EKGDKLKEDLASQHLQVAA 429 (2067)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHhHHhhhhhhhh-hccccchHHHHHHHHHHHH
Confidence 78888899999999999999999999999999999999999 999999999999988776 6666666667788999999
Q ss_pred HHHHHhhcCCCCCccCCchhHHHH---HHHHHHhhccCCChhhHHHHHHHHHHHHHHhhccCChhhHhhcHHHHHHHHHh
Q 001368 495 VAALIFISPKLPLGYPARLPKLVL---EVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWAT 571 (1091)
Q Consensus 495 lAALl~~~~~~pLgvp~~~~~~V~---~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~~~~~Vk~hl~qLLlLWk~ 571 (1091)
++.+++.++..-.+.|+-+....+ +.....+++ -.++.|.+++|+|-+-|.. +| + .|-.|-.
T Consensus 430 l~~l~s~~~gl~tt~~~~l~ds~l~i~~~~~~~l~~-----p~as~r~~aaw~Lrcll~~-~P-~--------~l~p~id 494 (2067)
T KOG1822|consen 430 LAELSSLSPGLGTTAPSLLPDSTLQILDLILTELRH-----PVASARLEAAWLLRCLLNA-MP-S--------YLTPTID 494 (2067)
T ss_pred HHHHHhhccccccchhhhhHHHHHHHHHHHHHHHcC-----chHHHHHHHHHHHHHHHhc-Cc-h--------hhhHHHH
Confidence 999999999877777777665544 444444444 3567999999999955555 55 3 4555555
Q ss_pred hcCCCchhhhhhccchhhHHHHHHHHHHHHHHH-HHhccCccccccchhhhhHHHHHHHHHHHHHHHhhhhCCCCChhHH
Q 001368 572 LFSGNAEHIIKQHGDLTSKICVLSTAVDALTAF-VRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMD 650 (1091)
Q Consensus 572 ~l~~s~~~~~~~~~e~~~~L~~r~~AL~aL~sF-L~~~lt~d~~~~~~ll~~~~~~L~~aL~~ls~~~~~~~~~lk~~~~ 650 (1091)
.|=..+..+-|+-++....+.+.++|+.||+++ ..+| | .++..++....++.+.+++.+-.+ +.+-...
T Consensus 495 ~~~~~~e~~~kq~~s~~~~~sg~S~aiaaLl~~~~~~~--p----lgIp~~k~~~v~~~Aedllkt~aq----nsr~s~~ 564 (2067)
T KOG1822|consen 495 RFLERLEHLFKQLRSSPEAVSGFSFAIAALLAGVVVSC--P----LGIPHAKGLKVLNFAEDLLKTAAQ----NSRLSLA 564 (2067)
T ss_pred HHhccchhHHHHhhccHHHHHHHHHHHHHHHhhhhhcC--C----CccchhhHHHHHHHHHHHHHhhcc----ChhHHHH
Confidence 443223334455667777888999999999999 5555 3 334445566566777777754421 2221111
Q ss_pred --HHHHHHHHHHhcCCCCCCCCCChHHHHHHHhhhcC-CCCcccchhhhhhhcccCCcccCCCCCCCchhHHhhhhhcCC
Q 001368 651 --IFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYR-DASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGG 727 (1091)
Q Consensus 651 --l~~~RiLq~y~~L~~~~~~~~~~~~LL~~~v~~Fs-d~~~~~~ss~l~sl~~~~D~~lG~~l~~~d~~e~~L~~~~~~ 727 (1091)
..=-+++..|-.+.| ..-......++.+-=..|. .|+- +++-=..+|.+ .|....+|.+..|..+.+.
T Consensus 565 kt~~gWlLi~aLmtlgp-sv~k~~lprllLlWk~~f~rs~ke------~ese~~rgdaF--twq~tl~~~agaL~~m~~~ 635 (2067)
T KOG1822|consen 565 KTLAGWLLISALMTLGP-SVVKLQLPRLLLLWKNAFPRSPKE------LESEESRGDAF--TWQLTLEGRAGALSYMKSF 635 (2067)
T ss_pred HHHhhHHHHHHHHhcCC-cccHHHHHHHHHHHHHhcccCccc------ccccccccchH--HHHHHHHhhhhHHHHHHHH
Confidence 111235556666663 3444445566665544554 2110 01111122222 1222223445555444443
Q ss_pred CCCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHhhcCCCchhHhHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHH
Q 001368 728 KDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAG 807 (1091)
Q Consensus 728 ~d~~lp~l~~~~~~~~p~p~p~~tsvVdasi~LF~~vFp~~~~k~q~s~LE~l~~~ik~~k~~~R~~Ai~vNv~~All~a 807 (1091)
.++.-+.+|++....++. |...-..++-|+..++|+.+++.++.|..+|++..++-.
T Consensus 636 ~s~~~~~~~e~~~~k~~~-----------------------p~~~~l~lls~v~~~lk~yg~~~~~sa~lvrIr~~l~e~ 692 (2067)
T KOG1822|consen 636 VSHKPDSLTESITLKFLT-----------------------PIECALSLLSQVPSVLKAYGNQLKRSALLVRIRAGLYEL 692 (2067)
T ss_pred hccCcchhhHHHHHhcCC-----------------------cHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 444334555433333332 455677889999999999999989999999999999988
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHHHHhcCC-cc-h---HHHHHHHhhc-ccccCCcchhHHHHHHHHHHHhhcCCccc
Q 001368 808 LKALLNLRPQTLGSEVLNSIQAIFLSILAEGD-IC-A---SQRRALLLGD-LTVVTDANYAGSIALAIGCIHRSAGGMAL 881 (1091)
Q Consensus 808 Lk~~~~~~~~~l~~~v~~~~~~li~~~l~~~d-~~-~---~~r~aa~l~~-lv~~~dp~~Ra~~aLALG~I~r~vGgmas 881 (1091)
|+..-.+.-. ......+.+++.+.-...+ ++ + ..|--++-.+ ++.. |.. ++..-..++.+
T Consensus 693 l~llp~~~~e---~~l~~~lr~lvad~tm~dn~~~~ttt~ll~s~~~~~~~ii~g--~~i---~~t~~~~~e~q------ 758 (2067)
T KOG1822|consen 693 LLLLPPSSYE---GSLTALLRKLVADLTMSDNLSANTTTELLRSLAFGDDSIITG--PWI---QATDHRSAEDQ------ 758 (2067)
T ss_pred HHhCCchhhH---HHHHHHHHHHHHhhcccccchhHHHHHHhhhhhccCcccccC--hhh---hhccchhHHHh------
Confidence 8654332211 1123334444444443333 11 1 1111111111 1111 111 11111112222
Q ss_pred ccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchhh-hHHHHH---HHhccCCCCCchhHHHHHHHHHH
Q 001368 882 SSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQA-TLGLAM---EILLSEENGWVDLQQGVGRLINA 957 (1091)
Q Consensus 882 ~~~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~s-tL~ll~---~lll~~~~~~~~~~~~igr~l~a 957 (1091)
+...-+|--+.-=-|.++++..+++++|..+.||+.+ +++++. ++|-+.-++ +++-++.
T Consensus 759 ----------~~~~~~~i~~g~le~d~s~ll~~~s~~g~~~~p~~lp~~ls~Idta~~lfg~vfp~-------v~~k~~~ 821 (2067)
T KOG1822|consen 759 ----------LLTPGSDIFSGALEEDLSSLLSLISAAGLSSVPYALPLALSLIDTAVSLFGSVFPH-------VNNKIRL 821 (2067)
T ss_pred ----------hccCccccceeeeecCchhhhHHHHhhcccCCCCCCcchhHHHHHHHHHHHHhccC-------ccHHHHH
Confidence 2344445556666688888999999999999998875 444433 454433222 3333444
Q ss_pred HHHhhCCCCCCchh----------hhH-------------------------------hhhccccCCCc--hhHHHHHhH
Q 001368 958 IVAVLGPELAPGSI----------FFS-------------------------------RCKVSAWQCSS--PKWSVRFTQ 994 (1091)
Q Consensus 958 lI~~LGPeLq~~s~----------~~~-------------------------------~~~~~~~~~~~--~~eai~clQ 994 (1091)
.|...|||.-..+. +++ +.........+ .--+-..++
T Consensus 822 ~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~a 901 (2067)
T KOG1822|consen 822 SILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALA 901 (2067)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHH
Confidence 44444444332221 000 00001111111 134677889
Q ss_pred HhhhcccCccchhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccCchhhhh-hchHHHHHHhhccCCCHHH---HH--HH
Q 001368 995 QLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIE-ERIEGNLFHMLDEETDSEY---VK--SY 1068 (1091)
Q Consensus 995 qL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a~~v~~-~~le~~Lf~~LD~e~d~~l---~~--~~ 1068 (1091)
+|.-|.|+..=+.++++.+...|.|.+...+|....-.+..+.|+...+.. +.+...++.+|+-++|+.. +. +.
T Consensus 902 rLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~ 981 (2067)
T KOG1822|consen 902 RLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLH 981 (2067)
T ss_pred HHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHH
Confidence 999999999999999999999999999999999999999999999988775 4666667777777776543 22 44
Q ss_pred HHHhhhhccccccccc
Q 001368 1069 TLCLAYFSSFYAFYLE 1084 (1091)
Q Consensus 1069 ~~~~~~~~~~~~~~~~ 1084 (1091)
.+-....+..+.||+-
T Consensus 982 al~~i~~s~~p~~~~~ 997 (2067)
T KOG1822|consen 982 ALALILDSSGPMFRVL 997 (2067)
T ss_pred HHHHHHcCCCceehhh
Confidence 4445556677777764
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.007 Score=77.13 Aligned_cols=815 Identities=14% Similarity=0.111 Sum_probs=453.3
Q ss_pred HHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhc-CCcchhHHhHHHHHHhhh-cCCCCChHhHH
Q 001368 47 ISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISK-GDNISVYSRVSSLQGFLS-DGKKSEPQKVA 124 (1091)
Q Consensus 47 ~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~-GD~~~lfdtvn~l~~iL~-~~K~~sp~~~~ 124 (1091)
-++-.+.+ .+.|..++..|...+..-+-+++||-+|+..|.+.+. +|- .=.++..+|- ..+...|..+-
T Consensus 66 ~~~w~~l~----~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-----~WPell~~L~q~~~S~~~~~rE 136 (1075)
T KOG2171|consen 66 TKHWSRLS----AEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-----KWPELLQFLFQSTKSPNPSLRE 136 (1075)
T ss_pred HHHhhcCC----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhcCCCcchhH
Confidence 34445555 6788899999999999999999999999999999985 444 2233333332 33344455555
Q ss_pred HHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCC-CCCchhHHHHHHHH---HHHHhcc
Q 001368 125 GAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSG-GSAAASAYSEAFRL---IMRFAIV 200 (1091)
Q Consensus 125 aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g-~~~~~~~~~di~K~---~~r~~~~ 200 (1091)
.|+.+|..+=+.+|......+.+....+.+.|-...+.+|..+.+++..+..-.. +...-.-.+|..-- +......
T Consensus 137 ~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~ 216 (1075)
T KOG2171|consen 137 SALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQ 216 (1075)
T ss_pred HHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhh
Confidence 7999999999999999999999999999999998776799999999999988664 11212223333221 2222344
Q ss_pred CcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccC--CChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCC
Q 001368 201 DKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIED--PIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPF 278 (1091)
Q Consensus 201 Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~--s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~ 278 (1091)
|..-.+-..+.+|+.++.... |-+-..-++.+..+|.+...+ =+..+|+.+=+++-.+.-. .|+ +.|+..
T Consensus 217 ~~d~~~a~~~l~~l~El~e~~-pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~--Ap~-----~~k~~~ 288 (1075)
T KOG2171|consen 217 DGDDDAAKSALEALIELLESE-PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY--APA-----MCKKLA 288 (1075)
T ss_pred ccchHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh--hHH-----Hhhhch
Confidence 455555566688888888876 555567788999999999888 4578999888887766532 111 011100
Q ss_pred CCCC----------------------------------C-hHHHHHHHhhhh----------------hcccCCCCcchh
Q 001368 279 PPAK----------------------------------K-LEGGLQRHLALP----------------FTRANGAKSKNM 307 (1091)
Q Consensus 279 ~~~k----------------------------------~-~e~~l~~~Ls~~----------------f~r~~~~~~r~~ 307 (1091)
.-.. . .++++. .++.+ ++.+ ...+-
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lD-rlA~~L~g~~v~p~~~~~l~~~l~S---~~w~~ 364 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALD-RLALHLGGKQVLPPLFEALEAMLQS---TEWKE 364 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHH-HHHhcCChhhehHHHHHHHHHHhcC---CCHHH
Confidence 0000 0 112222 22211 2233 45566
Q ss_pred HHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhc-cCCCccHHHHHHHHHHHHHhhhccCCcHHHHHHHHH-----
Q 001368 308 RVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLR-ADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVF----- 381 (1091)
Q Consensus 308 R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~-~~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q~~~~~~----- 381 (1091)
|-+.-+|..+..-.-+.. .++ ++.+++.+|.+.+. .|+++..-++.++. ++++.=|-++-+.
T Consensus 365 R~AaL~Als~i~EGc~~~-m~~--~l~~Il~~Vl~~l~DphprVr~AA~naig---------Q~stdl~p~iqk~~~e~l 432 (1075)
T KOG2171|consen 365 RHAALLALSVIAEGCSDV-MIG--NLPKILPIVLNGLNDPHPRVRYAALNAIG---------QMSTDLQPEIQKKHHERL 432 (1075)
T ss_pred HHHHHHHHHHHHcccHHH-HHH--HHHHHHHHHHhhcCCCCHHHHHHHHHHHH---------hhhhhhcHHHHHHHHHhc
Confidence 665556665554433321 111 24455555555554 22222222223322 3333322222222
Q ss_pred ---HHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhh----HHHHHH-HHHHHhcCCchHHHHHHHHHHHHHHHhCCc
Q 001368 382 ---LGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEF----KEVLDS-TVVAAVSHSSQLVRIEAALTLRALAEVDPT 453 (1091)
Q Consensus 382 ---l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~----~~~l~d-~l~~ll~hps~svRi~AA~cLr~~~~a~P~ 453 (1091)
++..+.+++. -.+...+.+.|+.-.-..+.+. -+.+.+ .+..++..++..||=.+.-++...+.+.-.
T Consensus 433 ~~aL~~~ld~~~~----~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 433 PPALIALLDSTQN----VRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred cHHHHHHhcccCc----hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 2222222221 2334445555555444555544 444555 444588899999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhhhhhccccCCcccchhhhhchHHHHHHHHHhhcCC-CCCccCCchhHHHHHHHHHHhhccCCCh
Q 001368 454 CVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPK-LPLGYPARLPKLVLEVSKKMLTESSRNT 532 (1091)
Q Consensus 454 ~~~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~alAALl~~~~~-~pLgvp~~~~~~V~~~A~~LLk~~~~~~ 532 (1091)
...+-.++.+..|.+.... ...+ ..+-+-|-+.=..++|+-+-. .+ ..| ....++.++-.+= .+-+.+
T Consensus 509 ~F~pY~d~~Mp~L~~~L~n---~~~~----d~r~LrgktmEcisli~~AVGke~-F~~--~a~eliqll~~~~-~~~~~~ 577 (1075)
T KOG2171|consen 509 KFIPYFDRLMPLLKNFLQN---ADDK----DLRELRGKTMECLSLIARAVGKEK-FLP--LAEELIQLLLELQ-GSDQDD 577 (1075)
T ss_pred hhHhHHHHHHHHHHHHHhC---CCch----hhHHHHhhHHHHHHHHHHHhhhhh-hhH--hHHHHHHHHHhhc-ccchhh
Confidence 9999999888888776432 1111 134466777666666654322 21 111 1222222222221 111111
Q ss_pred h-hHHHHHHHHHHHHHHhhccCChhhHhhcHHHHHHHHHhhcCCCc-------hhhhhh--ccchhhH------------
Q 001368 533 L-AATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNA-------EHIIKQ--HGDLTSK------------ 590 (1091)
Q Consensus 533 ~-~a~~~~qagWiLi~sLmtl~~~~~Vk~hl~qLLlLWk~~l~~s~-------~~~~~~--~~e~~~~------------ 590 (1091)
. -...-.-..|..++-. +|++|.-- ++.++..-..+-.-.| .+.+.. ..+|.+.
T Consensus 578 dd~~~sy~~~~warmc~i---lg~~F~p~-L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~T 653 (1075)
T KOG2171|consen 578 DDPLRSYMIAFWARMCRI---LGDDFAPF-LPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRT 653 (1075)
T ss_pred ccccHHHHHHHHHHHHHH---hchhhHhH-HHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeee
Confidence 1 2334456778877765 46688766 5555543333222111 111111 1123222
Q ss_pred --HHHHHHHHHHHHHHHHhccCccccccchhhhhHHHHHHHHHH-HHHHHhhhhCC--CCChhHHHHHHHHHHHHhcCCC
Q 001368 591 --ICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALS-YISTIAAKELP--NIKPAMDIFIIRTLIAYQSLPD 665 (1091)
Q Consensus 591 --L~~r~~AL~aL~sFL~~~lt~d~~~~~~ll~~~~~~L~~aL~-~ls~~~~~~~~--~lk~~~~l~~~RiLq~y~~L~~ 665 (1091)
++=.++|..+|-.|-... ..++ .-|.+..++ ++..+ +... +...+....+-+.++|+.+-
T Consensus 654 svl~eK~~A~~~Lv~~a~~l------k~~F-----~pYve~v~~l~v~~l--~f~fhdgVR~aa~~~~p~ll~~~~~A-- 718 (1075)
T KOG2171|consen 654 SVLDEKETACEALGEYAKEL------KEAF-----APYVEQVVELMVPLL--KFYFHDGVRKAAAESMPQLLTCALKA-- 718 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHhh------hhhh-----hhHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHHH--
Confidence 111245555555554331 1111 112233333 22111 0000 01111111111222222221
Q ss_pred CCCCCCChHHHHHHHhhhcCCCCcccchhhhhhhcccCCcccCCCCCCCchhHHhhhhhcCCCCCCCcccccccCCCCCC
Q 001368 666 PVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQ 745 (1091)
Q Consensus 666 ~~~~~~~~~~LL~~~v~~Fsd~~~~~~ss~l~sl~~~~D~~lG~~l~~~d~~e~~L~~~~~~~d~~lp~l~~~~~~~~p~ 745 (1091)
.+..|. .+..+|+. +-. ++... ... +
T Consensus 719 -----------------~~~~p~------~l~~l~~~--------------~~~--------------~l~~~-l~~--E 744 (1075)
T KOG2171|consen 719 -----------------CQGGPE------YLKQLWEA--------------IRP--------------ALIKA-LEE--E 744 (1075)
T ss_pred -----------------hccChH------HHHHHHHH--------------HHH--------------HHHHH-hhc--C
Confidence 122221 11111110 101 11100 000 0
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCCchhHhHHHHHHHHHHHccc-c---hhHHHHHHHHHHHHHHHHHHHHHhhCCCC--C
Q 001368 746 PETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGK-K---QSWHAASVTNICVGLLAGLKALLNLRPQT--L 819 (1091)
Q Consensus 746 p~p~~tsvVdasi~LF~~vFp~~~~k~q~s~LE~l~~~ik~~k-~---~~R~~Ai~vNv~~All~aLk~~~~~~~~~--l 819 (1091)
| ...+...++|.|.+||+... + +.-.+++..-+...++.-.+.+....... .
T Consensus 745 ~----------------------e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~ee 802 (1075)
T KOG2171|consen 745 P----------------------ETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEE 802 (1075)
T ss_pred C----------------------cHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 1 12345567788888887743 2 33346767777777777776665543331 1
Q ss_pred --ChHHHHHHH----HHHHHHHhcCCcchHHHHHH---------------HhhcccccCCcchhHHHHHHHHHHHhhcCC
Q 001368 820 --GSEVLNSIQ----AIFLSILAEGDICASQRRAL---------------LLGDLTVVTDANYAGSIALAIGCIHRSAGG 878 (1091)
Q Consensus 820 --~~~v~~~~~----~li~~~l~~~d~~~~~r~aa---------------~l~~lv~~~dp~~Ra~~aLALG~I~r~vGg 878 (1091)
+.+....+. .++..+. + ...+.++ .+........|..|...--.++-+..+.|+
T Consensus 803 d~d~~eee~~~e~d~~ll~~i~-~----i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~ 877 (1075)
T KOG2171|consen 803 DDDIEEEEDLDEQDAYLLDAIS-D----ILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGE 877 (1075)
T ss_pred hhhhHHHHHHhhhhHHHHHHHH-H----HHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccc
Confidence 122222222 0111110 0 0112222 122223456677777655566667777664
Q ss_pred cccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 001368 879 MALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAI 958 (1091)
Q Consensus 879 mas~~~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~~~~~~igr~l~al 958 (1091)
++-+....-.-.++...+|+.|.|.-=|-.++.+..+-+|-.|++.+.+.+-.+.+.+... .+|
T Consensus 878 -a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~----------~ar----- 941 (1075)
T KOG2171|consen 878 -ASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPP----------LAR----- 941 (1075)
T ss_pred -ccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcCh----------hhh-----
Confidence 3446677888889999999999999999999999999999999998887777776665532 111
Q ss_pred HHhhCCCCCCchhhhHhhhccccCCCchhHHHHHhHHhhhcccCccchhhHHHHHHHhhc-CCChHHHHHHHHHHHHHHc
Q 001368 959 VAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLS-SRQPILRHLAVSTLRHLIE 1037 (1091)
Q Consensus 959 I~~LGPeLq~~s~~~~~~~~~~~~~~~~~eai~clQqL~lFAP~~v~~~~lV~~L~~~L~-S~~~~Lr~aAv~cLrqL~q 1037 (1091)
. +-+...-..+++|++.+.+|-|.-++.+..++.+.+.|- +++..=..-.+.+|-+|+|
T Consensus 942 ----------~----------Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e 1001 (1075)
T KOG2171|consen 942 ----------T----------EENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYE 1001 (1075)
T ss_pred ----------h----------HHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHH
Confidence 0 000011267899999999999999999999999999994 6667777788999999999
Q ss_pred cCchhhhh
Q 001368 1038 KDPDSVIE 1045 (1091)
Q Consensus 1038 r~a~~v~~ 1045 (1091)
++...|..
T Consensus 1002 ~n~p~v~~ 1009 (1075)
T KOG2171|consen 1002 SNHPIVLG 1009 (1075)
T ss_pred hCCCeeeC
Confidence 99987764
No 4
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.31 E-value=0.029 Score=70.07 Aligned_cols=896 Identities=15% Similarity=0.112 Sum_probs=447.3
Q ss_pred ccCCCCchHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHH
Q 001368 30 SQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQ 109 (1091)
Q Consensus 30 ~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~ 109 (1091)
++|+=|=--+=|.+..|.+....++-| .-++..+.|.+++....| -+-|++-||++-|-++--...+=.+|++|.
T Consensus 17 sDKDfRfMAtsDLm~eLqkdsi~Ld~d----Se~kvv~~lLklL~D~ng-EVQnlAVKClg~lvsKvke~~le~~ve~L~ 91 (1233)
T KOG1824|consen 17 SDKDFRFMATSDLMTELQKDSIKLDDD----SERKVVKMLLKLLEDKNG-EVQNLAVKCLGPLVSKVKEDQLETIVENLC 91 (1233)
T ss_pred CCcchhhhhHHHHHHHHHhhhhhcccc----chhHHHHHHHHHHhccCc-HHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 355555555566777777765555543 345667777777765544 579999999999999888877877887776
Q ss_pred HhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhh-cHHHHHHHHHHHhccC------cHHHHHHHHHHHHHHHhcCCCCC
Q 001368 110 GFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITS-GLLETTIIAAKLMKFN------EEFVRQEALLLLQNALEGSGGSA 182 (1091)
Q Consensus 110 ~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s-~~~e~~~~llK~lK~~------~a~~R~~~l~~L~kil~g~g~~~ 182 (1091)
+=+-.||+. .+..+++.-..-+ .....+.++ ..+.+|..++--+|.. -++.+++.+..++-++...|+-.
T Consensus 92 ~~~~s~keq--~rdissi~Lktvi-~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll 168 (1233)
T KOG1824|consen 92 SNMLSGKEQ--LRDISSIGLKTVI-ANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLL 168 (1233)
T ss_pred hhhccchhh--hccHHHHHHHHHH-hcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccC
Confidence 653335532 1222333333221 122222222 2233444444445542 35699999999999999999888
Q ss_pred chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCC--ChhHHHHHHHHHHHHH
Q 001368 183 AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDP--IASVRDAFAEALGSLL 260 (1091)
Q Consensus 183 ~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s--~~~vR~a~A~~Lg~lL 260 (1091)
. +.|..|.| ...--+.-.-..||-=|+-|+..++... +..-+..+..-..|.+..+ +..+|..+ +|||++.
T Consensus 169 ~-~fh~~il~-~l~~ql~s~R~aVrKkai~~l~~la~~~----~~~ly~~li~~Ll~~L~~~~q~~~~rt~I-q~l~~i~ 241 (1233)
T KOG1824|consen 169 P-NFHLSILK-CLLPQLQSPRLAVRKKAITALGHLASSC----NRDLYVELIEHLLKGLSNRTQMSATRTYI-QCLAAIC 241 (1233)
T ss_pred c-chHHHHHH-HHhhcccChHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCCCCchHHHHHHH-HHHHHHH
Confidence 4 49999999 4665566666789999999999998875 2333466777778888874 35566654 7888877
Q ss_pred HhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHH
Q 001368 261 ALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQV 340 (1091)
Q Consensus 261 a~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i 340 (1091)
-.+-. + ..+.++-.+ -+...|+..-....-|.|=-+-++.-.|+.+-...-+- ...++....
T Consensus 242 r~ag~----------r---~~~h~~~iv--p~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p---~~pei~~l~ 303 (1233)
T KOG1824|consen 242 RQAGH----------R---FGSHLDKIV--PLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILP---HVPEIINLC 303 (1233)
T ss_pred HHhcc----------h---hhcccchhh--HHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcc---cchHHHHHH
Confidence 32111 0 011233333 34455664333345788889999999999884331111 123444444
Q ss_pred HHHhccCCCc----------------------cH----------HHH---HHHHHHHHHhhhccCCcHHHHHHHHHHHhh
Q 001368 341 MDMLRADIFV----------------------DS----------HAL---ACVLYILRIGVTDQMTEPTQRSFLVFLGKQ 385 (1091)
Q Consensus 341 ~~ll~~~~~~----------------------~~----------~~r---~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~ 385 (1091)
++-++-++++ |. .+| +|+.-++-+ =.++|.+--|. +.-.++.+
T Consensus 304 l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q~-l~p~lI~R 381 (1233)
T KOG1824|consen 304 LSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQT-LGPALISR 381 (1233)
T ss_pred HHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHH-hCHHHHHH
Confidence 5555511100 00 123 454444211 02334444442 11111111
Q ss_pred cc-cCCCCh----hHHHHHHHHHHHHHHHh--------CCCch---hhHH---HHHHHHHHHhcCCchHHHHHHHHHHHH
Q 001368 386 LQ-AVDASP----FMKIAALRTLSYTLKTL--------GEVPS---EFKE---VLDSTVVAAVSHSSQLVRIEAALTLRA 446 (1091)
Q Consensus 386 ~~-~~~~s~----~~lv~aL~el~~Ll~~L--------Gsa~~---~~~~---~l~d~l~~ll~hps~svRi~AA~cLr~ 446 (1091)
.+ +.+.-+ |+.+..|.-++..+..+ |..+. -+.+ .+...+-.-+.-.|.-.|.-.-.-|+.
T Consensus 382 fkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~e 461 (1233)
T KOG1824|consen 382 FKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTE 461 (1233)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHH
Confidence 21 111111 33344444444333333 33331 1222 244444555556677788888888999
Q ss_pred HHHhCCcchhhHHHHHHHHHHhhhhhhccccCCcccchhhhhchHHHHHHHHHhhcCCCCCccCCchh---HHHHHHHHH
Q 001368 447 LAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLP---KLVLEVSKK 523 (1091)
Q Consensus 447 ~~~a~P~~~~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~alAALl~~~~~~pLgvp~~~~---~~V~~~A~~ 523 (1091)
+....|..+.+-++..+..+..-. .|+...+--++...++-..+|.+-.++. .=||--. -.+...++.
T Consensus 462 li~~lp~~l~~~~~slvpgI~~~l-------~DkSsss~~ki~~L~fl~~~L~s~~p~~--fhp~~~~Ls~~v~~aV~d~ 532 (1233)
T KOG1824|consen 462 LINVLPGALAQHIPSLVPGIIYSL-------NDKSSSSNLKIDALVFLYSALISHPPEV--FHPHLSALSPPVVAAVGDP 532 (1233)
T ss_pred HHHhCcchhhhcccccchhhhhhc-------CCccchHHHHHHHHHHHHHHHhcCChhh--cccchhhhhhHHHHHhcCc
Confidence 999999988887776555543221 1122222333445555555555555432 2222110 000111111
Q ss_pred HhhccCCChhhHHHHHHHHHHHHHHhhccCChhhHhhcHHHHHHHHHhhcCCCchhhhhhccchhhHHHHHHHHHHHHHH
Q 001368 524 MLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTA 603 (1091)
Q Consensus 524 LLk~~~~~~~~a~~~~qagWiLi~sLmtl~~~~~Vk~hl~qLLlLWk~~l~~s~~~~~~~~~e~~~~L~~r~~AL~aL~s 603 (1091)
.=|-+..-=.+-..=..+-|=+=.+-++ .+++||+.-..-.+-..++ --...|+||+|.+||--
T Consensus 533 fyKisaEAL~v~~~lvkvirpl~~~~~~-d~~~~v~~m~~~tl~rL~a---------------~d~DqeVkeraIscmgq 596 (1233)
T KOG1824|consen 533 FYKISAEALLVCQQLVKVIRPLQPPSSF-DASPYVKTMYDCTLQRLKA---------------TDSDQEVKERAISCMGQ 596 (1233)
T ss_pred hHhhhHHHHHHHHHHHHHhcccCCCccC-CCChhHHHHHHHHHHHHhc---------------ccccHHHHHHHHHHHHH
Confidence 1000000000000000111111111112 3444444322222211111 12357899999999998
Q ss_pred HHHhccCccccccchhhhhHHHH----HHHHHHHHHHHhh-----------hhCCCCChhHH-H---HH--HHHHHHHhc
Q 001368 604 FVRCFLSPDAANSGILLQPVMVY----LSRALSYISTIAA-----------KELPNIKPAMD-I---FI--IRTLIAYQS 662 (1091)
Q Consensus 604 FL~~~lt~d~~~~~~ll~~~~~~----L~~aL~~ls~~~~-----------~~~~~lk~~~~-l---~~--~RiLq~y~~ 662 (1091)
++.++ .|....+ +.+++-. |.+=++.+.++.+ +..|.+..... + +| .|-++.
T Consensus 597 ~i~~f--gD~l~~e--L~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~--- 669 (1233)
T KOG1824|consen 597 IIANF--GDFLGNE--LPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRL--- 669 (1233)
T ss_pred HHHHH--hhhhhhh--hHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHH---
Confidence 88875 2332111 1122211 2222222222100 00001110000 0 01 011110
Q ss_pred CCCCCCCCCChHHHHHHHhhhcCCCCcccchhhhhhhcccCCcccCCCCCCCchhHHhhhhhcCCCCCCCcccccccCCC
Q 001368 663 LPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSS 742 (1091)
Q Consensus 663 L~~~~~~~~~~~~LL~~~v~~Fsd~~~~~~ss~l~sl~~~~D~~lG~~l~~~d~~e~~L~~~~~~~d~~lp~l~~~~~~~ 742 (1091)
... +.+..++..++|.- +..+.+. +-+| +|.+.. ++
T Consensus 670 --------~~l-~a~~~L~~~~~~~~---~~~~~e~------------------vL~e-----------l~~Lis-es-- 705 (1233)
T KOG1824|consen 670 --------ATL-TALDKLVKNYSDSI---PAELLEA------------------VLVE-----------LPPLIS-ES-- 705 (1233)
T ss_pred --------HHH-HHHHHHHHHHhccc---cHHHHHH------------------HHHH-----------hhhhhh-HH--
Confidence 000 11111222222200 0000000 0000 111111 00
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhcCC---CchhHhHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 001368 743 FPQPETIKKTLVNQMLLCFGIMFASQ---HSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTL 819 (1091)
Q Consensus 743 ~p~p~p~~tsvVdasi~LF~~vFp~~---~~k~q~s~LE~l~~~ik~~k~~~R~~Ai~vNv~~All~aLk~~~~~~~~~l 819 (1091)
---+-+.|+.+...++-.+ -.++...+|+++...+++.-.||- ...+++.....++..+...+
T Consensus 706 -------dlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~-------al~~~l~~f~alV~t~~~~l 771 (1233)
T KOG1824|consen 706 -------DLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGG-------ALSALLLFFQALVITKEPDL 771 (1233)
T ss_pred -------HHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccch-------HHHHHHHHHHHHHhcCCCCc
Confidence 0123334555444444333 357788899999888888766654 33333333333333332212
Q ss_pred ChHHHHHHHHHHHHHHhcCCc--------chHHHHHH----------------Hhhcccc-cCCcchhHHHHHHHHHHHh
Q 001368 820 GSEVLNSIQAIFLSILAEGDI--------CASQRRAL----------------LLGDLTV-VTDANYAGSIALAIGCIHR 874 (1091)
Q Consensus 820 ~~~v~~~~~~li~~~l~~~d~--------~~~~r~aa----------------~l~~lv~-~~dp~~Ra~~aLALG~I~r 874 (1091)
+ .. ...+++.+-+.++.. ++.-+|+| ++.++.. ..+...|-++-|.||.|=|
T Consensus 772 ~--y~-~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr 848 (1233)
T KOG1824|consen 772 D--YI-SLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGR 848 (1233)
T ss_pred c--HH-HHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhcc
Confidence 2 11 122233333322211 12445555 2222333 3556678899999999998
Q ss_pred hcCCcccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHhccCCCCCchhHHHHHHH
Q 001368 875 SAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRL 954 (1091)
Q Consensus 875 ~vGgmas~~~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~~~~~~igr~ 954 (1091)
..+ ..+.+.+++ ++..=-|-||..|..=|-+||.-+.--.-..|-| .+++.+-+++.-..= +
T Consensus 849 ~~~-~s~~~e~~~---~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLp-------fil~qi~sqpk~QyL-------L 910 (1233)
T KOG1824|consen 849 RKD-LSPQNELKD---TIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLP-------FILEQIESQPKRQYL-------L 910 (1233)
T ss_pred CCC-CCcchhhHH---HHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHH-------HHHHHHhcchHhHHH-------H
Confidence 888 445555655 4555567888899988888887665322233444 345555555443211 2
Q ss_pred HHHHHHh---hCCCCCCch------hhhHhhhccccCCCchhHHHHHhHHhhhcccCccchhhHHHHHHHhhcCCChHHH
Q 001368 955 INAIVAV---LGPELAPGS------IFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILR 1025 (1091)
Q Consensus 955 l~alI~~---LGPeLq~~s------~~~~~~~~~~~~~~~~~eai~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr 1025 (1091)
++++-++ --++.+-.+ ..+.-| ....|..-.---.|+=.|.+|.| ++++|.|+..+.|+.+-.|
T Consensus 911 LhSlkevi~~~svd~~~~~v~~IW~lL~k~c--E~~eegtR~vvAECLGkL~l~ep-----esLlpkL~~~~~S~a~~~r 983 (1233)
T KOG1824|consen 911 LHSLKEVIVSASVDGLKPYVEKIWALLFKHC--ECAEEGTRNVVAECLGKLVLIEP-----ESLLPKLKLLLRSEASNTR 983 (1233)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHHHhc--ccchhhhHHHHHHHhhhHHhCCh-----HHHHHHHHHHhcCCCcchh
Confidence 2222222 333322221 133334 11122222333458888888776 6899999999999999999
Q ss_pred HHHHHHHHHHHccCchhh---hhhchHHHHHHhhccCCCHHHHH-HHHHHhhhhccccc
Q 001368 1026 HLAVSTLRHLIEKDPDSV---IEERIEGNLFHMLDEETDSEYVK-SYTLCLAYFSSFYA 1080 (1091)
Q Consensus 1026 ~aAv~cLrqL~qr~a~~v---~~~~le~~Lf~~LD~e~d~~l~~-~~~~~~~~~~~~~~ 1080 (1091)
..+++..+=.+--++..+ .++.+++.|+.. ++||.+.+| .+.-.+...+|-++
T Consensus 984 s~vvsavKfsisd~p~~id~~lk~~ig~fl~~~--~dpDl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 984 SSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLL--RDPDLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred hhhhheeeeeecCCCCccCHHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHHHccCHh
Confidence 999999888777776543 345666655444 667888888 34444555555443
No 5
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.30 E-value=0.031 Score=69.84 Aligned_cols=388 Identities=20% Similarity=0.190 Sum_probs=223.1
Q ss_pred cCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChH-hHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHH
Q 001368 75 LGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQ-KVAGAAQCLGELYRQFGRRITSGLLETTIIAA 153 (1091)
Q Consensus 75 ~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~-~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~ll 153 (1091)
.+++--+|+=.--|++.+-+.|.+...-+-+..+.+=|. +. ..++ .+ --+.|||++-.+.|...++..+-++..+.
T Consensus 184 ~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~-~~-~q~~~~r-t~Iq~l~~i~r~ag~r~~~h~~~ivp~v~ 260 (1233)
T KOG1824|consen 184 QSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLS-NR-TQMSATR-TYIQCLAAICRQAGHRFGSHLDKIVPLVA 260 (1233)
T ss_pred cChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CC-CchHHHH-HHHHHHHHHHHHhcchhhcccchhhHHHH
Confidence 346667799999999999999998876666666666553 32 3343 44 58899999999999999999999999999
Q ss_pred HHhc---cCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchh
Q 001368 154 KLMK---FNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGEL 230 (1091)
Q Consensus 154 K~lK---~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dl 230 (1091)
++.. .++..+|-..+++|+..++..-.-+ .....+|..+ |+..+ .+++-|.+.+|
T Consensus 261 ~y~~~~e~~dDELrE~~lQale~fl~rcp~ei-~p~~pei~~l-------------------~l~yi-sYDPNy~yd~~- 318 (1233)
T KOG1824|consen 261 DYCNKIEEDDDELREYCLQALESFLRRCPKEI-LPHVPEIINL-------------------CLSYI-SYDPNYNYDTE- 318 (1233)
T ss_pred HHhcccccCcHHHHHHHHHHHHHHHHhChhhh-cccchHHHHH-------------------HHHHh-ccCCCCCCCCc-
Confidence 9994 4678999999999999998665333 2233333332 43333 33433334332
Q ss_pred hhHHHHHHHhccCCC--------------hhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHH---HHhh
Q 001368 231 DNSATHCVKAIEDPI--------------ASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQ---RHLA 293 (1091)
Q Consensus 231 E~l~tl~~K~le~s~--------------~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~---~~Ls 293 (1091)
|.=.+-- .-|.+| --||+|+|+|+..+...... -+.+..+ .-+.
T Consensus 319 eDed~~~--~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E-----------------~L~~~~q~l~p~lI 379 (1233)
T KOG1824|consen 319 EDEDAMF--LEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLE-----------------MLPDFYQTLGPALI 379 (1233)
T ss_pred cchhhhh--hhccccchhccccccccchhHHHHHHHHHHHHHHHhccHH-----------------HHHHHHHHhCHHHH
Confidence 1111100 011122 34999999999999854321 1222221 1233
Q ss_pred hhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHH-HHHHHhccCCCccHHHHHHHHHHHHHhhhccCCc
Q 001368 294 LPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYAL-QVMDMLRADIFVDSHALACVLYILRIGVTDQMTE 372 (1091)
Q Consensus 294 ~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~-~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE 372 (1091)
+-|..- -..||.-++.+|+.+++..+. |.+- |.+ .-++- ++.+.....-.+-+.+|. ..|+++|.|
T Consensus 380 ~RfkER----EEnVk~dvf~~yi~ll~qt~~-~~~~------~~d~d~~e~-~g~~s~~~~L~~~~~~iV-kai~~qlr~ 446 (1233)
T KOG1824|consen 380 SRFKER----EENVKADVFHAYIALLKQTRP-VIEV------LADNDAMEQ-GGTPSDLSMLSDQVPLIV-KAIQKQLRE 446 (1233)
T ss_pred HHHHHH----hhhHHHHHHHHHHHHHHcCCC-Cccc------ccCchhhhc-cCCccchHHHHhhhHHHH-HHHHHHHhh
Confidence 334322 256999999999999998764 3331 110 00111 111111112223344442 234444544
Q ss_pred HHH------HHHHHHHHhhccc-----------------CCCChhHHHHHHHHHHHHHHHhCCCchh----hHHHHHHHH
Q 001368 373 PTQ------RSFLVFLGKQLQA-----------------VDASPFMKIAALRTLSYTLKTLGEVPSE----FKEVLDSTV 425 (1091)
Q Consensus 373 ~~Q------~~~~~~l~~~~~~-----------------~~~s~~~lv~aL~el~~Ll~~LGsa~~~----~~~~l~d~l 425 (1091)
++= ...+..+++..+. .|.|. .-..-...++.|...|++.+++ .-..+..++
T Consensus 447 ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSs-ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v 525 (1233)
T KOG1824|consen 447 KSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSS-SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPV 525 (1233)
T ss_pred ccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccc-hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHH
Confidence 432 2455555554321 11111 2234556667777777776664 344566777
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhhccccCCcccchhhhhchHHHHHHHHHhhcCCC
Q 001368 426 VAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKL 505 (1091)
Q Consensus 426 ~~ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~alAALl~~~~~~ 505 (1091)
...+..|=|-|-.+|-.....|+. .+.-++ +.+
T Consensus 526 ~~aV~d~fyKisaEAL~v~~~lvk------------virpl~-----------------~~~------------------ 558 (1233)
T KOG1824|consen 526 VAAVGDPFYKISAEALLVCQQLVK------------VIRPLQ-----------------PPS------------------ 558 (1233)
T ss_pred HHHhcCchHhhhHHHHHHHHHHHH------------HhcccC-----------------CCc------------------
Confidence 777788888877777666666652 111110 100
Q ss_pred CCccCCchhHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHhhccCChhhHhhcHHHHHHHHHhhc
Q 001368 506 PLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLF 573 (1091)
Q Consensus 506 pLgvp~~~~~~V~~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~~~~~Vk~hl~qLLlLWk~~l 573 (1091)
..+ ...-.+.+++...+.|+..-+.- --.+.+--.+|=++...| .|.+.-+|..|...-.-+
T Consensus 559 ~~d-~~~~v~~m~~~tl~rL~a~d~Dq----eVkeraIscmgq~i~~fg-D~l~~eL~~~L~il~eRl 620 (1233)
T KOG1824|consen 559 SFD-ASPYVKTMYDCTLQRLKATDSDQ----EVKERAISCMGQIIANFG-DFLGNELPRTLPILLERL 620 (1233)
T ss_pred cCC-CChhHHHHHHHHHHHHhcccccH----HHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHH
Confidence 011 12335667777788888775531 223445555565555455 677777777666554444
No 6
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.14 E-value=0.00012 Score=79.26 Aligned_cols=130 Identities=24% Similarity=0.178 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcch
Q 001368 125 GAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSF 204 (1091)
Q Consensus 125 aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~ 204 (1091)
.|+.|++.++..+|+.+.......+..++|.+......+|..+..+|..+++.++ ...++.......+.++|+.
T Consensus 72 ~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 72 TACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNP 145 (228)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-H
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCH
Confidence 6999999999999999999999999999999998888999999999999999666 2234422245557899999
Q ss_pred HHHHHHHHHHHHHHhhcC---CCc-ccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 205 VVRIAGARCLKAFAHIGG---PCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 205 ~Vr~aAa~cL~~l~~~~~---~~~-~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
.||..+++|+..+....+ +.+ ....++.+...+.|.++|++.+||.++-+++..+-
T Consensus 146 ~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999988764 334 33457889999999999999999999999999885
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.067 Score=68.62 Aligned_cols=431 Identities=21% Similarity=0.157 Sum_probs=248.9
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHH-HHHHhhhc------CCCCChHhHHHHHHHHHHHHHHH
Q 001368 65 CEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVS-SLQGFLSD------GKKSEPQKVAGAAQCLGELYRQF 137 (1091)
Q Consensus 65 l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn-~l~~iL~~------~K~~sp~~~~aA~~cLG~l~~~~ 137 (1091)
+--.|..++..++-|-+|.+.|-=+=++..+ .|.+++ +-+.-|+. -+...+..++.-+..+.++.+..
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~-----~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~ 111 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTK-----HWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARND 111 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-----HhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence 4456777777888888877766655555554 444332 22222221 12334555556667777887777
Q ss_pred hhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 001368 138 GRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAF 217 (1091)
Q Consensus 138 G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l 217 (1091)
++. .-|+.+..++-..|+.+.+.|..+++.|..+.+-.|+.. ...++|+.. .+..+++|.+.+||++|++.+.++
T Consensus 112 l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~-~~~~~~l~~-lf~q~~~d~s~~vr~~a~rA~~a~ 186 (1075)
T KOG2171|consen 112 LPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL-QPHLDDLLR-LFSQTMTDPSSPVRVAAVRALGAF 186 (1075)
T ss_pred ccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc-chhHHHHHH-HHHHhccCCcchHHHHHHHHHHHH
Confidence 777 799999999999999999999999999999999999665 456677766 689999999999999999999888
Q ss_pred HhhcCCCcccchhh-------hHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHH
Q 001368 218 AHIGGPCLGVGELD-------NSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQR 290 (1091)
Q Consensus 218 ~~~~~~~~~~~dlE-------~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~ 290 (1091)
+..- . -++++.+ ++...+-+.++..|..+-+.+=++|-+++-.. |+ - -...++++++
T Consensus 187 ~~~~-~-~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~--pk------~-----l~~~l~~ii~- 250 (1075)
T KOG2171|consen 187 AEYL-E-NNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE--PK------L-----LRPHLSQIIQ- 250 (1075)
T ss_pred HHHh-c-cchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc--hH------H-----HHHHHHHHHH-
Confidence 7753 1 1233333 34455666677777766677777777766220 00 0 0011233331
Q ss_pred HhhhhhcccCCCCcchhHHHHHHHHHHHHHH---------------------------hccccCCCCc------h-hhHH
Q 001368 291 HLALPFTRANGAKSKNMRVNLTLSWVYFLQA---------------------------IRLKYFHPDS------E-LQDY 336 (1091)
Q Consensus 291 ~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~---------------------------lg~~~le~~~------~-~~~y 336 (1091)
+--....... ..+.+|.-.-+..+.|... -+..|.+.+- + -...
T Consensus 251 ~~l~Ia~n~~--l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~ 328 (1075)
T KOG2171|consen 251 FSLEIAKNKE--LENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRA 328 (1075)
T ss_pred HHHHHhhccc--ccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHH
Confidence 1111111111 3345555444444444332 1122332100 0 0112
Q ss_pred HHHHHHHhc---cCCCccHHHHHHHHHHHHHhhhccC------------------CcHHHHHHHHHHHhhcc-----cCC
Q 001368 337 ALQVMDMLR---ADIFVDSHALACVLYILRIGVTDQM------------------TEPTQRSFLVFLGKQLQ-----AVD 390 (1091)
Q Consensus 337 ~~~i~~ll~---~~~~~~~~~r~~v~~ILr~~i~~~L------------------gE~~Q~~~~~~l~~~~~-----~~~ 390 (1091)
+...+|.++ ++ +.|-..+-.-+-.+| +|-.+..+...+=+.++ -.|
T Consensus 329 A~~~lDrlA~~L~g--------~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 329 AEQALDRLALHLGG--------KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND 400 (1075)
T ss_pred HHHHHHHHHhcCCh--------hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Confidence 222333333 11 111111112222222 33333222222211111 146
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHhCCc-chhhHHHHHHHH-H
Q 001368 391 ASPFMKIAALRTLSYTLKTLGEVPS-EFKEVLDSTVVAAVSHSSQ-LVRIEAALTLRALAEVDPT-CVSGLITYGVTT-L 466 (1091)
Q Consensus 391 ~s~~~lv~aL~el~~Ll~~LGsa~~-~~~~~l~d~l~~ll~hps~-svRi~AA~cLr~~~~a~P~-~~~~ll~~~~~~-L 466 (1091)
|.|-+--.|+.++|.+=..++-... ...+.+...|+..+-.+.. -|+-+||-+|-.|..-+|. .+.|.|+..+++ +
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l 480 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL 480 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 6665666899998877776665443 3456677778888777655 8999999999999887776 889999988884 3
Q ss_pred HhhhhhhccccCCcccchhhhhchHHHHHHHHHhhcCCCCCccCCchhHHHHHHHHHHhhccCCChh-hHHHHHHHHHHH
Q 001368 467 NALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTL-AATVEKEAGWLL 545 (1091)
Q Consensus 467 ~~~~~~l~~~~~~~~~~~~~~~~G~a~alAALl~~~~~~pLgvp~~~~~~V~~~A~~LLk~~~~~~~-~a~~~~qagWiL 545 (1091)
.-+.. .+ .+..-.+--.+||+.-.++... .+|| ..+++-.=...|.++.+.++ ...-++-=|=.+
T Consensus 481 ~~L~~----~~------~~~v~e~vvtaIasvA~AA~~~--F~pY--~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisl 546 (1075)
T KOG2171|consen 481 LLLLQ----SS------KPYVQEQAVTAIASVADAAQEK--FIPY--FDRLMPLLKNFLQNADDKDLRELRGKTMECLSL 546 (1075)
T ss_pred HHHhc----CC------chhHHHHHHHHHHHHHHHHhhh--hHhH--HHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHH
Confidence 33311 11 1232344445666655555544 6665 57778888888888886554 333343333333
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.005 Score=74.14 Aligned_cols=308 Identities=19% Similarity=0.131 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhc
Q 001368 124 AGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF----NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAI 199 (1091)
Q Consensus 124 ~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~----~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~ 199 (1091)
+||+.+|..+|+ +. ..-+++-.+|. .+=.+|-+...+|++|-+|+-.+..+ ..-+++- .+.+++
T Consensus 376 AAaLDVLanvf~---~e-------lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p-~LpeLip-~l~~~L 443 (885)
T KOG2023|consen 376 AAALDVLANVFG---DE-------LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVP-HLPELIP-FLLSLL 443 (885)
T ss_pred HHHHHHHHHhhH---HH-------HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhccc-chHHHHH-HHHHHh
Confidence 677777776664 33 33444445553 34568999999999999998877743 4568888 588899
Q ss_pred cCcchHHHHHHHHHHHHHHhhcCCCccc-chhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCC
Q 001368 200 VDKSFVVRIAGARCLKAFAHIGGPCLGV-GELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPF 278 (1091)
Q Consensus 200 ~Dks~~Vr~aAa~cL~~l~~~~~~~~~~-~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~ 278 (1091)
.||...||...|-.|....+.- ..-.. .=|..+..=.+|-+=++|-.|..|+..++|.+--.+...- .
T Consensus 444 ~DKkplVRsITCWTLsRys~wv-~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eL---V------- 512 (885)
T KOG2023|consen 444 DDKKPLVRSITCWTLSRYSKWV-VQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEEL---V------- 512 (885)
T ss_pred ccCccceeeeeeeeHhhhhhhH-hcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchh---H-------
Confidence 9999999988876665444321 00122 2255666666777777888899999999888763322210 0
Q ss_pred CCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhc--------cCCCc
Q 001368 279 PPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLR--------ADIFV 350 (1091)
Q Consensus 279 ~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~--------~~~~~ 350 (1091)
+ -++..+ ..|..-|-|-. .|..++ +-.|...|--..|.. | |-..|..+++-=+- .++..
T Consensus 513 -p--~l~~IL-~~l~~af~kYQ---~KNLlI-LYDAIgtlAdsvg~~-L----n~~~YiqiLmPPLi~KW~~lsd~DKdL 579 (885)
T KOG2023|consen 513 -P--YLEYIL-DQLVFAFGKYQ---KKNLLI-LYDAIGTLADSVGHA-L----NKPAYIQILMPPLIEKWELLSDSDKDL 579 (885)
T ss_pred -H--HHHHHH-HHHHHHHHHHh---hcceeh-HHHHHHHHHHHHHHh-c----CcHHHHHHhccHHHHHHHhcCcccchH
Confidence 0 334555 47777777763 444443 556666676667753 2 23688876553222 11111
Q ss_pred cHH--HHHHHHHHHHHhhhccCCcHHHH--HHHH----HHHhhcc--c-CCCChhHHHHHHHHHHHHHHHhCCCchhh--
Q 001368 351 DSH--ALACVLYILRIGVTDQMTEPTQR--SFLV----FLGKQLQ--A-VDASPFMKIAALRTLSYTLKTLGEVPSEF-- 417 (1091)
Q Consensus 351 ~~~--~r~~v~~ILr~~i~~~LgE~~Q~--~~~~----~l~~~~~--~-~~~s~~~lv~aL~el~~Ll~~LGsa~~~~-- 417 (1091)
=+. +..||.--|++++.+.--|-=|+ .+++ .+.+.-. . ..|.+..++|+|+.+++|.+.||+...++
T Consensus 580 fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva 659 (885)
T KOG2023|consen 580 FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVA 659 (885)
T ss_pred HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhh
Confidence 222 34667777888888777777664 2222 2222111 1 22567789999999999999999987764
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHH
Q 001368 418 KEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLN 467 (1091)
Q Consensus 418 ~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~ 467 (1091)
+..+++.+++++..+-.-||-.|=.-|--++.+++.++-|-++..+..|-
T Consensus 660 ~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg 709 (885)
T KOG2023|consen 660 QSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILG 709 (885)
T ss_pred hccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 45699999999999999999999888888998888887777776666554
No 9
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.68 E-value=0.00036 Score=84.70 Aligned_cols=218 Identities=17% Similarity=0.152 Sum_probs=135.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCcchHHHHHH------------------HhhcccccCCcchhHHHHHHHHHHHhhcCCcc
Q 001368 819 LGSEVLNSIQAIFLSILAEGDICASQRRAL------------------LLGDLTVVTDANYAGSIALAIGCIHRSAGGMA 880 (1091)
Q Consensus 819 l~~~v~~~~~~li~~~l~~~d~~~~~r~aa------------------~l~~lv~~~dp~~Ra~~aLALG~I~r~vGgma 880 (1091)
.++++..++...+++-+.++|++ .|+.| .|.++....+|+.|-..++++..||+..+..
T Consensus 72 ~~~~~~~l~~n~l~kdl~~~n~~--~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~- 148 (526)
T PF01602_consen 72 EDPELLILIINSLQKDLNSPNPY--IRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL- 148 (526)
T ss_dssp TSHHHHHHHHHHHHHHHCSSSHH--HHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-
T ss_pred cchhHHHHHHHHHHHhhcCCCHH--HHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-
Confidence 35777777777777777777764 44444 2333456799999999999999999997754
Q ss_pred cccchhh-HHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 001368 881 LSSLVPA-TVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIV 959 (1091)
Q Consensus 881 s~~~l~t-~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~~~~~~igr~l~alI 959 (1091)
+.. .+..+..+.+|++|.|...|+.++.-+ ......|...++.....+.+++ ..+.. -...++++.+.
T Consensus 149 ----~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l-~~~~~-----~~q~~il~~l~ 217 (526)
T PF01602_consen 149 ----VEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLL-SDPDP-----WLQIKILRLLR 217 (526)
T ss_dssp ----HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHH-TCCSH-----HHHHHHHHHHT
T ss_pred ----HHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcc-cccch-----HHHHHHHHHHH
Confidence 344 688899999999999999999999888 3222222233444444444444 11111 12333333333
Q ss_pred HhhCCCCCCch---hhhHhhhc--cccCCCchhHHHHHhHHhhhcccCccchhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 001368 960 AVLGPELAPGS---IFFSRCKV--SAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRH 1034 (1091)
Q Consensus 960 ~~LGPeLq~~s---~~~~~~~~--~~~~~~~~~eai~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aAv~cLrq 1034 (1091)
. ++|.-.... .+...+.. ...++.+..|+++++-+ +.|..--....++.|...|.++++.+|-.++.+|++
T Consensus 218 ~-~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~---l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~ 293 (526)
T PF01602_consen 218 R-YAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIK---LSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQ 293 (526)
T ss_dssp T-STSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred h-cccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHH---hhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHH
Confidence 2 334322221 22222211 11111223555555554 444444667789999999999999999999999999
Q ss_pred HHccCchhhhhhchHHHHHHhh
Q 001368 1035 LIEKDPDSVIEERIEGNLFHML 1056 (1091)
Q Consensus 1035 L~qr~a~~v~~~~le~~Lf~~L 1056 (1091)
++++++..+. ...-.+|.+.
T Consensus 294 l~~~~~~~v~--~~~~~~~~l~ 313 (526)
T PF01602_consen 294 LAQSNPPAVF--NQSLILFFLL 313 (526)
T ss_dssp HCCHCHHHHG--THHHHHHHHH
T ss_pred hhcccchhhh--hhhhhhheec
Confidence 9999965554 3334444333
No 10
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.60 E-value=0.066 Score=65.17 Aligned_cols=408 Identities=16% Similarity=0.143 Sum_probs=230.8
Q ss_pred CCCchHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHH-hHHHHHHh
Q 001368 33 SPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYS-RVSSLQGF 111 (1091)
Q Consensus 33 ~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfd-tvn~l~~i 111 (1091)
+++|...---|+.|-..- +++-+ ..+...+.+++. .+-|-+|+-++.|+.++|.. ++-.+-+ -++.+...
T Consensus 90 ~~n~~~~~lAL~~l~~i~---~~~~~----~~l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~l 160 (526)
T PF01602_consen 90 SPNPYIRGLALRTLSNIR---TPEMA----EPLIPDVIKLLS-DPSPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQL 160 (526)
T ss_dssp SSSHHHHHHHHHHHHHH----SHHHH----HHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhhhc---ccchh----hHHHHHHHHHhc-CCchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhh
Confidence 455555555555544432 33333 334555555555 55668999999999999998 3333333 37788888
Q ss_pred hhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHH--HH
Q 001368 112 LSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAY--SE 189 (1091)
Q Consensus 112 L~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~--~d 189 (1091)
++ |.+|....+|+.++.++ +.-.+......+..+..+.+.++...+-++..+++.|.+. .... +... .+
T Consensus 161 L~---d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~----~~~~-~~~~~~~~ 231 (526)
T PF01602_consen 161 LS---DKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRY----APME-PEDADKNR 231 (526)
T ss_dssp TT---HSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTS----TSSS-HHHHHHHH
T ss_pred cc---CCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhc----ccCC-hhhhhHHH
Confidence 85 55687777899999999 4444443466777777777777888888899999888863 3233 2223 45
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCc
Q 001368 190 AFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQ 269 (1091)
Q Consensus 190 i~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~ 269 (1091)
+... ....+.+.+..|+..|++|+..+.... .-+..+.....+.+.+++..+|-.+-++|..+.... ++
T Consensus 232 ~i~~-l~~~l~s~~~~V~~e~~~~i~~l~~~~------~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~-- 300 (526)
T PF01602_consen 232 IIEP-LLNLLQSSSPSVVYEAIRLIIKLSPSP------ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PP-- 300 (526)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHSSSH------HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HH--
T ss_pred HHHH-HHHHhhccccHHHHHHHHHHHHhhcch------HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--ch--
Confidence 6663 555577889999999999988666553 145678899999999999999999999998877332 11
Q ss_pred CCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCC
Q 001368 270 VQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIF 349 (1091)
Q Consensus 270 ~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~ 349 (1091)
.+. ...+...|++.. ....+|.-..+. +..+.. + .|...++..+.+.+....
T Consensus 301 -------------~v~---~~~~~~~~l~~~--~d~~Ir~~~l~l----L~~l~~---~--~n~~~Il~eL~~~l~~~~- 352 (526)
T PF01602_consen 301 -------------AVF---NQSLILFFLLYD--DDPSIRKKALDL----LYKLAN---E--SNVKEILDELLKYLSELS- 352 (526)
T ss_dssp -------------HHG---THHHHHHHHHCS--SSHHHHHHHHHH----HHHH-----H--HHHHHHHHHHHHHHHHC--
T ss_pred -------------hhh---hhhhhhheecCC--CChhHHHHHHHH----Hhhccc---c--cchhhHHHHHHHHHHhcc-
Confidence 011 012222344533 345555533332 222221 0 123344444444442111
Q ss_pred ccH-HHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 001368 350 VDS-HALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAA 428 (1091)
Q Consensus 350 ~~~-~~r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~l 428 (1091)
|. +.+..+.-| +...... ++.....+..+.+-+.. .+++...-+...+..++.. .+...+.+.+.++..
T Consensus 353 -d~~~~~~~i~~I-~~la~~~--~~~~~~~v~~l~~ll~~--~~~~~~~~~~~~i~~ll~~----~~~~~~~~l~~L~~~ 422 (526)
T PF01602_consen 353 -DPDFRRELIKAI-GDLAEKF--PPDAEWYVDTLLKLLEI--SGDYVSNEIINVIRDLLSN----NPELREKILKKLIEL 422 (526)
T ss_dssp --HHHHHHHHHHH-HHHHHHH--GSSHHHHHHHHHHHHHC--TGGGCHCHHHHHHHHHHHH----STTTHHHHHHHHHHH
T ss_pred -chhhhhhHHHHH-HHHHhcc--CchHHHHHHHHHHhhhh--ccccccchHHHHHHHHhhc----ChhhhHHHHHHHHHH
Confidence 22 333344433 3333222 11222222333332211 1122222344445555544 233445556666666
Q ss_pred hcC-CchHHHHHHHHHHHHHHHhCCc--chhhHHHHHHHHHHhhhhhhccccCCcccchhhhhchHHHHHHHHHhhcCCC
Q 001368 429 VSH-SSQLVRIEAALTLRALAEVDPT--CVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKL 505 (1091)
Q Consensus 429 l~h-ps~svRi~AA~cLr~~~~a~P~--~~~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~alAALl~~~~~~ 505 (1091)
+.. ++..++-.++|++-.++...+. ....++..+.+..... .. .=....+.++.......
T Consensus 423 l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~---------------~~--~vk~~ilt~~~Kl~~~~ 485 (526)
T PF01602_consen 423 LEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEE---------------SP--EVKLQILTALAKLFKRN 485 (526)
T ss_dssp HTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTS---------------HH--HHHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccc---------------cH--HHHHHHHHHHHHHHhhC
Confidence 554 5667899999999999988887 4444444433332111 11 12234555655555432
Q ss_pred CCccCCchhHHHHHHHHHHhhc
Q 001368 506 PLGYPARLPKLVLEVSKKMLTE 527 (1091)
Q Consensus 506 pLgvp~~~~~~V~~~A~~LLk~ 527 (1091)
| +.+....++.+-.++.+.
T Consensus 486 ~---~~~~~~~i~~~~~~~~~~ 504 (526)
T PF01602_consen 486 P---ENEVQNEILQFLLSLATE 504 (526)
T ss_dssp C---STTHHHHHHHHHHCHHHH
T ss_pred C---chhhHHHHHHHHHHHhcc
Confidence 1 124555777777777774
No 11
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.57 E-value=0.0096 Score=77.58 Aligned_cols=129 Identities=22% Similarity=0.135 Sum_probs=95.6
Q ss_pred HHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHH
Q 001368 90 GRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALL 169 (1091)
Q Consensus 90 a~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~ 169 (1091)
+.+...++. +++.|...|+ |++|..+.+|+..||+.. -++++..+.+.++..+..+|..+..
T Consensus 613 ~~~~~l~~~-----~~~~L~~~L~---D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~ 674 (897)
T PRK13800 613 LAVLALDAP-----SVAELAPYLA---DPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAE 674 (897)
T ss_pred HHHHhccch-----hHHHHHHHhc---CCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHH
Confidence 444444444 7778888886 778887778999999642 3667788899999999999999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHH
Q 001368 170 LLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVR 249 (1091)
Q Consensus 170 ~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR 249 (1091)
+|.++.+... +. + +....+.|.+..||.+|++.|..+... +. ....+.++++|..||
T Consensus 675 aL~~l~~~~~---~~----~----~L~~~L~~~d~~VR~~A~~aL~~~~~~--------~~----~~l~~~L~D~d~~VR 731 (897)
T PRK13800 675 GLRELVEVLP---PA----P----ALRDHLGSPDPVVRAAALDVLRALRAG--------DA----ALFAAALGDPDHRVR 731 (897)
T ss_pred HHHHHHhccC---ch----H----HHHHHhcCCCHHHHHHHHHHHHhhccC--------CH----HHHHHHhcCCCHHHH
Confidence 9988754222 11 1 233346788899999999988775422 22 245689999999999
Q ss_pred HHHHHHHHHH
Q 001368 250 DAFAEALGSL 259 (1091)
Q Consensus 250 ~a~A~~Lg~l 259 (1091)
.++++.|+.+
T Consensus 732 ~~Av~aL~~~ 741 (897)
T PRK13800 732 IEAVRALVSV 741 (897)
T ss_pred HHHHHHHhcc
Confidence 9999999974
No 12
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.7 Score=59.90 Aligned_cols=771 Identities=15% Similarity=0.087 Sum_probs=364.5
Q ss_pred HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHHhcCC
Q 001368 103 SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF---NEEFVRQEALLLLQNALEGSG 179 (1091)
Q Consensus 103 dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~---~~a~~R~~~l~~L~kil~g~g 179 (1091)
|+++.+.+++...+.+-+..+ .++.||+.+-.+.+-+.-+ .+.+.+-+.-++-. +.+-+|.++.+.+..|+.|--
T Consensus 93 ~~~~~l~~~~~~~stn~svlr-~~iscL~~lLraQd~~aW~-~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~ 170 (1176)
T KOG1248|consen 93 DTLNILAPFLTAESTNGSVLR-LAISCLEDLLRAQDASAWS-YSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPP 170 (1176)
T ss_pred HHHHHHHHHHhhhcccchHHH-HHHHHHHHHHHHcchhhhc-cccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCC
Confidence 577788888873333334455 7999999999999888866 55566655555543 346799999999999999766
Q ss_pred CCCc------hhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC--cccchhhhHHHHHHHhccCCChhHHHH
Q 001368 180 GSAA------ASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC--LGVGELDNSATHCVKAIEDPIASVRDA 251 (1091)
Q Consensus 180 ~~~~------~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~--~~~~dlE~l~tl~~K~le~s~~~vR~a 251 (1091)
-+.+ -.+++.+.++ +.+-.+ -......+..|.--..++ |-.+.+|.+...|++.+-.++..++..
T Consensus 171 ~~~~~~HpA~~~vak~cl~~-~e~~~~------~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~ 243 (1176)
T KOG1248|consen 171 FAPDAEHPASLSVAKFCLAL-IESKLG------SAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLE 243 (1176)
T ss_pred CCccccchHHHHHHHHHHHH-HHhhhc------hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHH
Confidence 3332 2344455554 222222 111122332222111122 447899999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHH-HHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCC
Q 001368 252 FAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGL-QRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPD 330 (1091)
Q Consensus 252 ~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l-~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~ 330 (1091)
+=+|+..+. +.+.+ .+..+. .++|...|-... .+.+.=++.+|+..+.....
T Consensus 244 ~~q~l~~lf-~~~~~----------------~l~a~~~a~lL~al~~l~p----s~~D~~~t~~W~~v~~~~~~------ 296 (1176)
T KOG1248|consen 244 VLQCLHSLF-KKHPT----------------ALAAELNARLLTALMTLSP----SENDDLLTVAWLKVLNEAHD------ 296 (1176)
T ss_pred HHHHHHHHH-hcCCC----------------cchHHHHHHHHHHHHHhCC----CccchHHHHHHHHHHHHHHH------
Confidence 999999887 33322 122222 246666664442 44555677888887665432
Q ss_pred chhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHh
Q 001368 331 SELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTL 410 (1091)
Q Consensus 331 ~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~L 410 (1091)
+|..+=.+..-.+ ....---|++ | -|+.+.+..+...+.+ ...+
T Consensus 297 ----~la~~q~~~~~~~--~~~~~~~~~t-~---------~~s~~~e~~q~a~q~l--------------------~~il 340 (1176)
T KOG1248|consen 297 ----ILATLQEEKALQA--LPRLFSLFFT-I---------LESLIEELVQAASQSL--------------------KEIL 340 (1176)
T ss_pred ----HHHHhCHHHHHHh--hhhhhhHHHH-H---------HhcccHHHHHHHHHHH--------------------HHHh
Confidence 2221100000000 0000002333 2 2333333333333321 1111
Q ss_pred CCCchhhHHHHHHHHHHHhcCCchHHHHHHHH--HHHHHHHhCCcchhhHHHHHHHHHHhhhhhhccccCCcccchhhhh
Q 001368 411 GEVPSEFKEVLDSTVVAAVSHSSQLVRIEAAL--TLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSL 488 (1091)
Q Consensus 411 Gsa~~~~~~~l~d~l~~ll~hps~svRi~AA~--cLr~~~~a~P~~~~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~ 488 (1091)
..... ..|.++.--.|.-.+.|.+++| ||+.++ ..++.+-.
T Consensus 341 ~~sv~-----~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s------------~~fek~G~-------------------- 383 (1176)
T KOG1248|consen 341 KESVT-----VIDALCSKQLHSLLDYKFHAVWRFILQILS------------ALFEKCGE-------------------- 383 (1176)
T ss_pred cccCc-----ccHHHHHHHHHHHHcchHHHHHHHHHHHHH------------HHHHHhhh--------------------
Confidence 11111 2233333355555677888888 344433 22222110
Q ss_pred chHHHHHHHHHhhcCCCCCccCCchhHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHhhccCChhhHhhcHHHHHHH
Q 001368 489 HGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSL 568 (1091)
Q Consensus 489 ~G~a~alAALl~~~~~~pLgvp~~~~~~V~~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~~~~~Vk~hl~qLLlL 568 (1091)
+...+-.=.|-.... ++.+.+.. .+.|.=-.+.+++-. +||+.|=.-+|= .+
T Consensus 384 ~s~~~l~~~L~~l~~---------------------lr~~~d~~----~~~~ld~~IGSAV~A-mGPe~vL~~lpL--nl 435 (1176)
T KOG1248|consen 384 LSGPELTKTLEGLCD---------------------LRASPDFF----HKLQLDQCIGSAVRA-MGPERVLTILPL--NL 435 (1176)
T ss_pred hcCHHHHHHHHHHHH---------------------hhcCCCCc----cHHHHHHHHHHHHHh-hCHHHHHHHcch--hc
Confidence 001111111111111 11122111 111223334445555 677755332221 00
Q ss_pred HHhhcCCCchhhhhhccchhhHHHHHHHHHHHHHHHHHhccCccccccchhhhhHHHHHHHHHHHHHHHhhhhCCCCChh
Q 001368 569 WATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPA 648 (1091)
Q Consensus 569 Wk~~l~~s~~~~~~~~~e~~~~L~~r~~AL~aL~sFL~~~lt~d~~~~~~ll~~~~~~L~~aL~~ls~~~~~~~~~lk~~ 648 (1091)
+.-.. .-..-|.+=+ +|...-+|=++|... .++.+..+.......+ +..+..
T Consensus 436 --~~~s~------~~~RsWLLPv-LR~~i~~A~La~F~~--------------~ivpla~sl~~K~~~l-----~~~~~~ 487 (1176)
T KOG1248|consen 436 --HAESL------SFTRSWLLPV-LRDYIIGASLAFFTE--------------YIVPLAMSLQLKAKKL-----KEAGSQ 487 (1176)
T ss_pred --ccccc------ccchhHhHHH-HHHhhccCcHHHHHH--------------HHHHHHHHHHHHHHhh-----hhccCc
Confidence 11000 0011243322 455555554444332 2221211111111111 111111
Q ss_pred HHHHHHHHHHHHhcCCC----CCCCCCChHHHHHHHhhhcC-CCCcccc--hhhhhhhcccCCcccCCCCCCCchhHHhh
Q 001368 649 MDIFIIRTLIAYQSLPD----PVSYKSDHPQLIKLCTTPYR-DASACEE--SSCLRLLLDKRDAWLGPWIPGRDWFEDEL 721 (1091)
Q Consensus 649 ~~l~~~RiLq~y~~L~~----~~~~~~~~~~LL~~~v~~Fs-d~~~~~~--ss~l~sl~~~~D~~lG~~l~~~d~~e~~L 721 (1091)
..+|+.-..|....||. |..-+.++..|-+.+.+... .|+.-.+ .+ ++.|...+- |.+|.-|.-
T Consensus 488 ~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~elr~~Ic~s-L~~Lv~~n~-------~~~~a~e~~- 558 (1176)
T KOG1248|consen 488 VSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRPELRETICNS-LRMLVEQNK-------PSSDAAENK- 558 (1176)
T ss_pred HHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcchHhHHHHHHH-HHHHHHcCC-------CcchHHHHH-
Confidence 11555446677777764 76777777777766655544 2211100 01 122222221 122221111
Q ss_pred hhhcCCCCCCCc---ccccccCCCCCCCCCchhHHHHHHHHHHH-HhhcCCCchhHhHHHHHHHHHHHcc--cchhHHHH
Q 001368 722 CAFQGGKDGLMP---CVWENEVSSFPQPETIKKTLVNQMLLCFG-IMFASQHSSGMLSLLGIIEQCLKAG--KKQSWHAA 795 (1091)
Q Consensus 722 ~~~~~~~d~~lp---~l~~~~~~~~p~p~p~~tsvVdasi~LF~-~vFp~~~~k~q~s~LE~l~~~ik~~--k~~~R~~A 795 (1091)
.-.+.-..+.+| .+|...+ +... ..-+.++.=++--. .+|.-.+.+++-++.|.+.+-.... +......+
T Consensus 559 e~~s~~AknfL~~lfn~ytq~~---~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~ 634 (1176)
T KOG1248|consen 559 EVLSNDAKNFLPRLFNVYTQTV---AAGR-KILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTL 634 (1176)
T ss_pred HHHhhhhhHHHHHHHHHhcCCC---cccc-ccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHH
Confidence 000111122334 3443211 1110 22333333333333 3455556666666666666533221 11112233
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCC-hHHHHHHHHHHHHHHhcCCcchHHHHHH--HhhcccccCCcchhHHHHHHHHHH
Q 001368 796 SVTNICVGLLAGLKALLNLRPQTLG-SEVLNSIQAIFLSILAEGDICASQRRAL--LLGDLTVVTDANYAGSIALAIGCI 872 (1091)
Q Consensus 796 i~vNv~~All~aLk~~~~~~~~~l~-~~v~~~~~~li~~~l~~~d~~~~~r~aa--~l~~lv~~~dp~~Ra~~aLALG~I 872 (1091)
-..++.+|+--. .+ ..|-+.. ++......+.+ +..|..+ .++.+... | .+
T Consensus 635 slLdl~~~~a~~-----------~~e~~vs~l~-~v~~~~e~~~~--~~vQkK~yrlL~~l~~~--~-----------s~ 687 (1176)
T KOG1248|consen 635 SLLDLLIALAPV-----------QTESQVSKLF-TVDPEFENSSS--TKVQKKAYRLLEELSSS--P-----------SG 687 (1176)
T ss_pred HHHHHHHhhhcc-----------ccchhHHHHH-HhhHHhhcccc--HHHHHHHHHHHHHHhcC--C-----------ch
Confidence 333333332111 12 2222222 34333333322 2233332 33322211 1 11
Q ss_pred HhhcCCcccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHhccCCCCCc-------
Q 001368 873 HRSAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWV------- 945 (1091)
Q Consensus 873 ~r~vGgmas~~~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~------- 945 (1091)
-.+ .++|+.++.++|..=.|+....++.=.|++|..+++..+..+-.+++ .++-+.+++-.+.++
T Consensus 688 ~~~-----~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~---k~I~EvIL~~Ke~n~~aR~~Af 759 (1176)
T KOG1248|consen 688 EGL-----VEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP---KLIPEVILSLKEVNVKARRNAF 759 (1176)
T ss_pred hhH-----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH---HHHHHHHHhcccccHHHHhhHH
Confidence 112 34789999999999999999999999999999999997744444444 344444444343333
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCch--hhhHhhhccccCCCch-hHH-HHHhHHhhhcccCccc---hhhHHHHHHHhhc
Q 001368 946 DLQQGVGRLINAIVAVLGPELAPGS--IFFSRCKVSAWQCSSP-KWS-VRFTQQLVLFAPQAVS---VHSHVQTLLSTLS 1018 (1091)
Q Consensus 946 ~~~~~igr~l~alI~~LGPeLq~~s--~~~~~~~~~~~~~~~~-~ea-i~clQqL~lFAP~~v~---~~~lV~~L~~~L~ 1018 (1091)
+.-+.||++-. ..-.|=|=+... .+++.+..+...|..- +.+ |--+-++..=--+++| ++.+....|.+|+
T Consensus 760 ~lL~~i~~i~~--~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~ 837 (1176)
T KOG1248|consen 760 ALLVFIGAIQS--SLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLA 837 (1176)
T ss_pred HHHHHHHHHHh--hhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 23366666322 222342221111 1222221122233221 111 2222222221223333 3446678899999
Q ss_pred CCChHHHHHHHHHHHHHHccCchhhhhhc---hHHHHHHhhccCCCHHHHH---HH-HHHhhhhccccccccccccc
Q 001368 1019 SRQPILRHLAVSTLRHLIEKDPDSVIEER---IEGNLFHMLDEETDSEYVK---SY-TLCLAYFSSFYAFYLENEYL 1088 (1091)
Q Consensus 1019 S~~~~Lr~aAv~cLrqL~qr~a~~v~~~~---le~~Lf~~LD~e~d~~l~~---~~-~~~~~~~~~~~~~~~~~~~~ 1088 (1091)
|..+..++|||..++-+++..+...+... |-..+|.++++-.-+...+ ++ .+|--+-...++-++++|+|
T Consensus 838 s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~ 914 (1176)
T KOG1248|consen 838 SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDM 914 (1176)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHH
Confidence 99999999999999999999999988754 4556677776655444333 22 24444444555555555543
No 13
>PRK09687 putative lyase; Provisional
Probab=97.42 E-value=0.0082 Score=67.81 Aligned_cols=154 Identities=12% Similarity=-0.013 Sum_probs=103.1
Q ss_pred cCCCchhhHHHHHHHHHHhhcCCcch-hHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHH
Q 001368 75 LGARRPVRHLASVAMGRIISKGDNIS-VYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAA 153 (1091)
Q Consensus 75 ~~~g~P~R~l~a~cla~l~~~GD~~~-lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~ll 153 (1091)
..+-|-+|+..+..|+.+ |++.. .=+.+..|..++. +|.++..+..|+..||.+- ..-..-.+..+..+.
T Consensus 64 ~~~d~~vR~~A~~aLg~l---g~~~~~~~~a~~~L~~l~~--~D~d~~VR~~A~~aLG~~~----~~~~~~~~~a~~~l~ 134 (280)
T PRK09687 64 SSKNPIERDIGADILSQL---GMAKRCQDNVFNILNNLAL--EDKSACVRASAINATGHRC----KKNPLYSPKIVEQSQ 134 (280)
T ss_pred hCCCHHHHHHHHHHHHhc---CCCccchHHHHHHHHHHHh--cCCCHHHHHHHHHHHhccc----ccccccchHHHHHHH
Confidence 456778899999999986 33221 1123345555432 3556776668888888752 222222345566666
Q ss_pred HHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhH
Q 001368 154 KLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNS 233 (1091)
Q Consensus 154 K~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l 233 (1091)
..++..+..+|..+..+|++ +| ++.....+.+ ++.|.+..||..|+..|..+-..+ +..
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~----~~---~~~ai~~L~~-----~L~d~~~~VR~~A~~aLg~~~~~~---------~~~ 193 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSV----IN---DEAAIPLLIN-----LLKDPNGDVRNWAAFALNSNKYDN---------PDI 193 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhc----cC---CHHHHHHHHH-----HhcCCCHHHHHHHHHHHhcCCCCC---------HHH
Confidence 67777778899998888854 34 2333444444 477888899999999887662222 456
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHH
Q 001368 234 ATHCVKAIEDPIASVRDAFAEALGS 258 (1091)
Q Consensus 234 ~tl~~K~le~s~~~vR~a~A~~Lg~ 258 (1091)
.....+.+++.|.+||..++..||.
T Consensus 194 ~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 194 REAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHc
Confidence 7778888899999999999998887
No 14
>PRK09687 putative lyase; Provisional
Probab=97.24 E-value=0.0072 Score=68.25 Aligned_cols=162 Identities=20% Similarity=0.065 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHH
Q 001368 62 QRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRI 141 (1091)
Q Consensus 62 Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l 141 (1091)
|.+....|..++..-+-+-+|.-++..|+.+-..+... .=..++.+...+. |+++..+.+|+..||. +
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~--------~ 155 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-SPKIVEQSQITAF---DKSTNVRFAVAFALSV--------I 155 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-chHHHHHHHHHhh---CCCHHHHHHHHHHHhc--------c
Confidence 44556667666677788889999999999985444311 1123344444443 6677777789999983 3
Q ss_pred hhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q 001368 142 TSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 142 ~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
+ -++.+..+++.++.....+|..+..+|+++ + ..++.+..-+.+ ++.|....||.+|+.-|..+-.
T Consensus 156 ~--~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~-~~~~~~~~~L~~-----~L~D~~~~VR~~A~~aLg~~~~-- 221 (280)
T PRK09687 156 N--DEAAIPLLINLLKDPNGDVRNWAAFALNSN----K-YDNPDIREAFVA-----MLQDKNEEIRIEAIIGLALRKD-- 221 (280)
T ss_pred C--CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC----C-CCCHHHHHHHHH-----HhcCCChHHHHHHHHHHHccCC--
Confidence 3 367899999999998889999999999996 2 122343444444 4799999999999988755322
Q ss_pred CCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 222 GPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 222 ~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
+.......+.+++++ +|..++.+||++-
T Consensus 222 ---------~~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 222 ---------KRVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred ---------hhHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 457788889999876 7888999999865
No 15
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.43 Score=62.95 Aligned_cols=422 Identities=20% Similarity=0.216 Sum_probs=240.0
Q ss_pred ccccchhHHHHHHHHHhhhccCCCCchHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHH
Q 001368 11 PLSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMG 90 (1091)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla 90 (1091)
+=-++.++--.|+..+-+..+ +-|..-+ =||=.+.+++...+. +...-+++..+...+|.. ---=+-...+|=|+
T Consensus 812 n~~~~~~~~~~l~~~~~s~np-h~R~A~~-VWLLs~vq~l~~~~~--v~l~~~eI~~aF~~~Lsd-~dEf~QDvAsrGlg 886 (1702)
T KOG0915|consen 812 NDTRETIILKLLDTLLTSPNP-HERQAGC-VWLLSLVQYLGQQPE--VVLMLKEIQEAFSHLLSD-NDEFSQDVASRGLG 886 (1702)
T ss_pred CCccHHHHHHHHHHhcCCCCH-HHHHHHH-HHHHHHHHHhccCch--hhhccHHHHHHHHHHhcc-cHHHHHHHHhcCce
Confidence 344667777888888776543 3333222 366666777743322 222223333333333321 11223566888999
Q ss_pred HHhhcCCcchhHHhHHHHHHhhhcCCCC------------------C---------------------h-----------
Q 001368 91 RIISKGDNISVYSRVSSLQGFLSDGKKS------------------E---------------------P----------- 120 (1091)
Q Consensus 91 ~l~~~GD~~~lfdtvn~l~~iL~~~K~~------------------s---------------------p----------- 120 (1091)
-+|+.||...==+-|+.|.+-|-+||.+ + |
T Consensus 887 lVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAn 966 (1702)
T KOG0915|consen 887 LVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLAN 966 (1702)
T ss_pred EEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence 9999999999999999999988765522 0 2
Q ss_pred ------HhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 001368 121 ------QKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLI 194 (1091)
Q Consensus 121 ------~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~ 194 (1091)
+|+ +|+.-+|.+.++.|..+--.+.-.+.-+.|+==.-...++ -+|..+=+++-.-.....+-.+.||++--
T Consensus 967 h~A~wnSk~-GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~neIl~eL 1044 (1702)
T KOG0915|consen 967 HNATWNSKK-GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQ-DAMTSIWNALITDSKKVVDEYLNEILDEL 1044 (1702)
T ss_pred hhchhhccc-chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHH-HHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 145 8999999999999999866655544433332111222333 45666555555333233345677777753
Q ss_pred HHHhccCcchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHHHHHHHhccCCChhHHHH---HHHHHHHHHHhccCCCCcC
Q 001368 195 MRFAIVDKSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDA---FAEALGSLLALGMNPQAQV 270 (1091)
Q Consensus 195 ~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~tl~~K~le~s~~~vR~a---~A~~Lg~lLa~~~~~~~~~ 270 (1091)
.. ++++|..-||-|+|=.|..|.+.- |+- -...+-.+-...||++||--..||.| +++.|+.+.+....+.
T Consensus 1045 L~-~lt~kewRVReasclAL~dLl~g~-~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~--- 1119 (1702)
T KOG0915|consen 1045 LV-NLTSKEWRVREASCLALADLLQGR-PFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVT--- 1119 (1702)
T ss_pred HH-hccchhHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC---
Confidence 33 489999999999999999988862 432 12223366778999999999999987 4666777777766542
Q ss_pred CCCCCCCCCCCCChHHHHHHHhhhhhcccC--CCCcchhHHHHHHHHHHHHHHhcc---------------ccCCCCchh
Q 001368 271 QPKGKGPFPPAKKLEGGLQRHLALPFTRAN--GAKSKNMRVNLTLSWVYFLQAIRL---------------KYFHPDSEL 333 (1091)
Q Consensus 271 ~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~--~~~~r~~R~Gv~~ayv~fl~~lg~---------------~~le~~~~~ 333 (1091)
.++ +-.+++..+| ||+=.. .++-+++|.-..-..+.+..--|+ .|-|-+..+
T Consensus 1120 --~~~-------~~~~~l~~iL--PfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1120 --NGA-------KGKEALDIIL--PFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred --Ccc-------cHHHHHHHHH--HHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHH
Confidence 111 1123332111 232221 234456655333333333333222 111111112
Q ss_pred hHHHHH--------HHHHhcc-CCCccHHH---HHHHHHHHHHhhhccCCcHHHHHHHHHHHhhccc-CCCChhHHHHHH
Q 001368 334 QDYALQ--------VMDMLRA-DIFVDSHA---LACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQA-VDASPFMKIAAL 400 (1091)
Q Consensus 334 ~~y~~~--------i~~ll~~-~~~~~~~~---r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~-~~~s~~~lv~aL 400 (1091)
-||+.. .+|-+.. -....+-. -.|+.||=-.++ .++.-.+++-+.+ +..+ +-+.+-
T Consensus 1189 LnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vL---------eelip~l~el~R~sVgl~--Tkvg~A 1257 (1702)
T KOG0915|consen 1189 LNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVL---------EELIPRLTELVRGSVGLG--TKVGCA 1257 (1702)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHH---------HHHHHHHHHHHhccCCCC--cchhHH
Confidence 333321 0011000 00001111 267777721111 2344444443322 2222 334445
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHH-HHHHHHHHhCCcchhhHHHHHHHHH
Q 001368 401 RTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAA-LTLRALAEVDPTCVSGLITYGVTTL 466 (1091)
Q Consensus 401 ~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA-~cLr~~~~a~P~~~~~ll~~~~~~L 466 (1091)
+=+..|..++|.--.+..+.+...++..+..-+.+||-+=| .|..-+-.+-|++...++...+..+
T Consensus 1258 ~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~ 1324 (1702)
T KOG0915|consen 1258 SFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADL 1324 (1702)
T ss_pred HHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 56778889999988899999999999999999999987644 4555555666777777776554443
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.06 E-value=0.34 Score=59.39 Aligned_cols=279 Identities=17% Similarity=0.145 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcch
Q 001368 125 GAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSF 204 (1091)
Q Consensus 125 aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~ 204 (1091)
.++.+|..+++.. ...+..+.....+.+.++..++.+|.-+++.++++++...+...-..-.+++.. .=.|+.|.+.
T Consensus 57 ~~~~iL~~~l~~~--~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~-i~~~L~~~d~ 133 (503)
T PF10508_consen 57 LICDILKRLLSAL--SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL-IIQCLRDPDL 133 (503)
T ss_pred HHHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH-HHHHHcCCcH
Confidence 4667788888854 333447888888999999989999999999999998866543322233566664 4446899999
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccchhhhH-----HHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCC
Q 001368 205 VVRIAGARCLKAFAHIGGPCLGVGELDNS-----ATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFP 279 (1091)
Q Consensus 205 ~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l-----~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~ 279 (1091)
.|..+|++.|..+.++. + .++.+ .+-..+.+..+|+.+|.-+-+++..+.....
T Consensus 134 ~Va~~A~~~L~~l~~~~-~-----~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~--------------- 192 (503)
T PF10508_consen 134 SVAKAAIKALKKLASHP-E-----GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP--------------- 192 (503)
T ss_pred HHHHHHHHHHHHHhCCc-h-----hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH---------------
Confidence 99999999999999874 2 22333 5556666777788999999999888763211
Q ss_pred CCCChHHHHHHHhhhhhc----ccCCCCcch--hHHHHHHHHHHHHHH-hccccCCCCchhhHHHHHHHHHhccCCCccH
Q 001368 280 PAKKLEGGLQRHLALPFT----RANGAKSKN--MRVNLTLSWVYFLQA-IRLKYFHPDSELQDYALQVMDMLRADIFVDS 352 (1091)
Q Consensus 280 ~~k~~e~~l~~~Ls~~f~----r~~~~~~r~--~R~Gv~~ayv~fl~~-lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~ 352 (1091)
+.+..+..+|++ +-- .+.| +|..+.+....+-.. -|..|+++ ..+...+.+++.+.. .|+
T Consensus 193 ------~~~~~~~~sgll~~ll~eL--~~dDiLvqlnalell~~La~~~~g~~yL~~----~gi~~~L~~~l~~~~-~dp 259 (503)
T PF10508_consen 193 ------EAAEAVVNSGLLDLLLKEL--DSDDILVQLNALELLSELAETPHGLQYLEQ----QGIFDKLSNLLQDSE-EDP 259 (503)
T ss_pred ------HHHHHHHhccHHHHHHHHh--cCccHHHHHHHHHHHHHHHcChhHHHHHHh----CCHHHHHHHHHhccc-cCC
Confidence 111111111111 111 2355 455666555555443 45556654 245555666665322 222
Q ss_pred -----H---HHHHHHHHHHHhhhccCCcHHH-----HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchh---
Q 001368 353 -----H---ALACVLYILRIGVTDQMTEPTQ-----RSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSE--- 416 (1091)
Q Consensus 353 -----~---~r~~v~~ILr~~i~~~LgE~~Q-----~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~--- 416 (1091)
+ .-++...+.+ . .+.+ -.++..+-+..++.|++ ...+|++++|. +|++...
T Consensus 260 ~~~~~~l~g~~~f~g~la~------~-~~~~v~~~~p~~~~~l~~~~~s~d~~--~~~~A~dtlg~----igst~~G~~~ 326 (503)
T PF10508_consen 260 RLSSLLLPGRMKFFGNLAR------V-SPQEVLELYPAFLERLFSMLESQDPT--IREVAFDTLGQ----IGSTVEGKQL 326 (503)
T ss_pred cccchhhhhHHHHHHHHHh------c-ChHHHHHHHHHHHHHHHHHhCCCChh--HHHHHHHHHHH----HhCCHHHHHH
Confidence 1 1144444432 1 2222 23444444444444544 45688888884 4554431
Q ss_pred -------hHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCc
Q 001368 417 -------FKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPT 453 (1091)
Q Consensus 417 -------~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~ 453 (1091)
....+.........++..-+|+.+-.||..+...-+.
T Consensus 327 L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 327 LLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD 370 (503)
T ss_pred HHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC
Confidence 1234566777778888888999888888888655443
No 17
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.99 E-value=0.17 Score=60.99 Aligned_cols=355 Identities=16% Similarity=0.147 Sum_probs=206.3
Q ss_pred hHHHHHHHHHHHHHHHhhcC--CCchhhHHHHHHHHHHhhcCCcchhHHhHHH-HH-HhhhcC-CCCChHhHHHHHHHHH
Q 001368 57 SILLWQRKCEDALYSLLILG--ARRPVRHLASVAMGRIISKGDNISVYSRVSS-LQ-GFLSDG-KKSEPQKVAGAAQCLG 131 (1091)
Q Consensus 57 di~~~Q~~l~~~L~~~l~~~--~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~-l~-~iL~~~-K~~sp~~~~aA~~cLG 131 (1091)
.+.++|--+-.-.-++++.. ++-|-|+..|....++|+.--+..+=++..+ +- .++.+= .++..... -+.|.|
T Consensus 511 vilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~--il~~f~ 588 (975)
T COG5181 511 VILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGL--ILPCFS 588 (975)
T ss_pred HHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccE--EEeccc
Confidence 35566644545555566644 5667798888888888876333322222221 11 122210 12222221 346666
Q ss_pred HHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHH---HHHHHHhcCCC----------------CCchhHHHHHHH
Q 001368 132 ELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALL---LLQNALEGSGG----------------SAAASAYSEAFR 192 (1091)
Q Consensus 132 ~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~---~L~kil~g~g~----------------~~~~~~~~di~K 192 (1091)
.+--++|-..--..+.+++.++|.+|+..+.+|..+.. .|.++++.+|. ..++.+..-|.|
T Consensus 589 tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~ 668 (975)
T COG5181 589 TVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILK 668 (975)
T ss_pred ceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHH
Confidence 66666666666778889999999999987777876544 46667776553 123445666666
Q ss_pred HHHHHhccC-----------------------cchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccC---CCh
Q 001368 193 LIMRFAIVD-----------------------KSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIED---PIA 246 (1091)
Q Consensus 193 ~~~r~~~~D-----------------------ks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~---s~~ 246 (1091)
++.+.++- |---|+....+-+..+...++.|...-|. ..+||-.+|. -|-
T Consensus 669 -Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEW---MRIcfeLvd~Lks~nK 744 (975)
T COG5181 669 -AICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREW---MRICFELVDSLKSWNK 744 (975)
T ss_pred -HHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHH---HHHHHHHHHHHHHhhH
Confidence 45554331 22235555555555555555444433332 3567666554 788
Q ss_pred hHHHHHHHHHHHHHHhccCCCCcCC---CCCC---CCCCC----CCCh--H-----HHHHHHhhhhhcccCCCCcchhHH
Q 001368 247 SVRDAFAEALGSLLALGMNPQAQVQ---PKGK---GPFPP----AKKL--E-----GGLQRHLALPFTRANGAKSKNMRV 309 (1091)
Q Consensus 247 ~vR~a~A~~Lg~lLa~~~~~~~~~~---~~~k---~~~~~----~k~~--e-----~~l~~~Ls~~f~r~~~~~~r~~R~ 309 (1091)
+.|+++-..+|-+- .+.-|...-. ..-| ++... +... | .++ -.|.+-|-.+ .-.|.-
T Consensus 745 eiRR~A~~tfG~Is-~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVl-P~lm~dY~TP----e~nVQn 818 (975)
T COG5181 745 EIRRNATETFGCIS-RAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVL-PTLMSDYETP----EANVQN 818 (975)
T ss_pred HHHHhhhhhhhhHH-hhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhH-HHHHhcccCc----hhHHHH
Confidence 99999998888754 3322221000 0000 00000 0000 1 111 1333334333 356888
Q ss_pred HHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhcc-CCCccHHHHHHHHHHHHHhhh---ccCCcHHHHHHHHHHHhh
Q 001368 310 NLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRA-DIFVDSHALACVLYILRIGVT---DQMTEPTQRSFLVFLGKQ 385 (1091)
Q Consensus 310 Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~-~~~~~~~~r~~v~~ILr~~i~---~~LgE~~Q~~~~~~l~~~ 385 (1091)
||--|..+||...|..- -.|.-.|.-++.. =..-|+.-|.....++|..+. ....|.+-+.++..|+-.
T Consensus 819 GvLkam~fmFeyig~~s-------~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpN 891 (975)
T COG5181 819 GVLKAMCFMFEYIGQAS-------LDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPN 891 (975)
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhh
Confidence 99999999999998632 4677666666652 233456555555555566652 233455556666666543
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHH
Q 001368 386 LQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRI 438 (1091)
Q Consensus 386 ~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi 438 (1091)
+ -|++||+.-...+-+-++-..||+.+ +..-+.+=|-||+-+||-
T Consensus 892 I--le~sPhvi~~~~Eg~e~~~~~lg~g~------~m~Yv~qGLFHPs~~VRk 936 (975)
T COG5181 892 I--LEPSPHVIQSFDEGMESFATVLGSGA------MMKYVQQGLFHPSSTVRK 936 (975)
T ss_pred c--cCCCcHHHHHHHHHHHHHHHHhccHH------HHHHHHHhccCchHHHHH
Confidence 3 68999988888999999999998754 677888899999999995
No 18
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.82 E-value=0.76 Score=55.71 Aligned_cols=322 Identities=16% Similarity=0.139 Sum_probs=174.7
Q ss_pred hhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhc---CCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHh
Q 001368 80 PVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSD---GKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLM 156 (1091)
Q Consensus 80 P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~---~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~l 156 (1091)
=+||..||.++.+-+. . .++.++-+|++ +|| |-+.+|-.+-|..++-+-+|+...+-....+..+-|.+
T Consensus 296 YVRnvt~ra~~vva~a---l----gv~~llpfl~a~c~Srk-Sw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l 367 (975)
T COG5181 296 YVRNVTGRAVGVVADA---L----GVEELLPFLEALCGSRK-SWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLL 367 (975)
T ss_pred HHHHHHHHHHHHHHHh---h----CcHHHHHHHHHHhcCcc-chhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHh
Confidence 3599999988877643 2 35666666652 444 55555678999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc--ccchh-
Q 001368 157 KFNEEFVRQEALLLLQNALEGSGGSAA---ASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL--GVGEL- 230 (1091)
Q Consensus 157 K~~~a~~R~~~l~~L~kil~g~g~~~~---~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~--~~~dl- 230 (1091)
|..+..+|.-.-.+|..+.+..|.-.. +.+..-+|+-+.++ ++ +-+.++.+..|..+ -..|+
T Consensus 368 ~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~h----rg--------k~l~sfLkA~g~iiplm~peYa 435 (975)
T COG5181 368 KDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQH----RG--------KELVSFLKAMGFIIPLMSPEYA 435 (975)
T ss_pred hccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhc----CC--------chHHHHHHHhccccccCChHhh
Confidence 998888998888888887777775442 33555566643222 22 22333333321111 11111
Q ss_pred ----hhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCCh-HHHHHHHhhhhh-cccCCCCc
Q 001368 231 ----DNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKL-EGGLQRHLALPF-TRANGAKS 304 (1091)
Q Consensus 231 ----E~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~-e~~l~~~Ls~~f-~r~~~~~~ 304 (1091)
-....++++-|++++.+-..-+-... .+..+. ....++.+ +|+.= .+-++| .|-+. .-
T Consensus 436 ~h~tre~m~iv~ref~spdeemkk~~l~v~------~~C~~v--------~~~tp~~lr~~v~p-efF~~fw~rr~A-~d 499 (975)
T COG5181 436 CHDTREHMEIVFREFKSPDEEMKKDLLVVE------RICDKV--------GTDTPWKLRDQVSP-EFFSPFWRRRSA-GD 499 (975)
T ss_pred hhhHHHHHHHHHHHhCCchhhcchhHHHHH------HHHhcc--------CCCCHHHHHHhhcH-HhhchHHHhhhc-cc
Confidence 12445666666666655433221110 000110 00011223 33332 233333 23111 11
Q ss_pred chhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCC----CccHHH-HHHHHHHHHHhhhccCCcHHHHHHH
Q 001368 305 KNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADI----FVDSHA-LACVLYILRIGVTDQMTEPTQRSFL 379 (1091)
Q Consensus 305 r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~----~~~~~~-r~~v~~ILr~~i~~~LgE~~Q~~~~ 379 (1091)
|+.---|+.+-+.+-+..|. ......|++-.+..+ .+.+.. -|.++-+=|.++ +|.-...+.
T Consensus 500 r~~~k~v~~ttvilAk~~g~---------~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~----dErleerl~ 566 (975)
T COG5181 500 RRSYKQVVLTTVILAKMGGD---------PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGF----DERLEERLY 566 (975)
T ss_pred ccccceeehhHHHHHHHcCC---------hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccc----cHHHHHHHH
Confidence 22222344555555555664 234445555554322 122221 244444433333 555555555
Q ss_pred HHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCc
Q 001368 380 VFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPT 453 (1091)
Q Consensus 380 ~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~ 453 (1091)
..+++.....+.+... .|--.+..+.+||.-..+....+...++..|-||...||++||-..-.++...-.
T Consensus 567 d~il~Afqeq~~t~~~---il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~ 637 (975)
T COG5181 567 DSILNAFQEQDTTVGL---ILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKA 637 (975)
T ss_pred HHHHHHHHhccccccE---EEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHh
Confidence 5555544322222110 1111122234455555566777889999999999999999999988887744433
No 19
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.69 E-value=0.048 Score=64.83 Aligned_cols=118 Identities=22% Similarity=0.114 Sum_probs=88.0
Q ss_pred HHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCch
Q 001368 105 VSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAA 184 (1091)
Q Consensus 105 vn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~ 184 (1091)
++.|.+.+. +.++..+.+|+..||.+ .-+.....+.+.++..|+.+|+.++.+++. -+
T Consensus 88 ~~~L~~~L~---d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~----r~----- 145 (410)
T TIGR02270 88 LRSVLAVLQ---AGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGA----HR----- 145 (410)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHh----hc-----
Confidence 557777775 55565677888888842 346678889999999999999999977776 11
Q ss_pred hHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHH
Q 001368 185 SAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSL 259 (1091)
Q Consensus 185 ~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~l 259 (1091)
.|-++ ..+.+++|.+..||.+|++|+..+-... ....+.+++.+.|..||.+++..++.+
T Consensus 146 ---~~~~~-~L~~~L~d~d~~Vra~A~raLG~l~~~~-----------a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 146 ---HDPGP-ALEAALTHEDALVRAAALRALGELPRRL-----------SESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ---cChHH-HHHHHhcCCCHHHHHHHHHHHHhhcccc-----------chHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 12233 3445688999999999999998776543 233344789999999999999988654
No 20
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.67 E-value=0.0088 Score=56.88 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhcc
Q 001368 163 VRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIE 242 (1091)
Q Consensus 163 ~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le 242 (1091)
.|...|.+|+++..++|... +....+|.+-+. .+++|.+.-||.+||++|..+.+....-+ -.-|+.+-...+|.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~-~~~l~~Il~pVL-~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDI-SKYLDEILPPVL-KCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhH-HHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 48899999999999999775 678899999755 57999999999999999999998752111 1246778888899999
Q ss_pred CCChhHHHHHHHHHHHHH
Q 001368 243 DPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 243 ~s~~~vR~a~A~~Lg~lL 260 (1091)
+++..||.++ +.|-.+|
T Consensus 79 D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLL 95 (97)
T ss_pred CCchhHHHHH-HHHHHHh
Confidence 9999999876 5555544
No 21
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=2.8 Score=54.13 Aligned_cols=431 Identities=17% Similarity=0.138 Sum_probs=238.2
Q ss_pred cccccchhHHHHHHHHHhhhccCCCCc-------hHHHHHHHHHHH---hhccCCh--hhHHHHHHHHHHHHHHHhh--c
Q 001368 10 VPLSRFGVLVAQLESIVASASQQSPDP-------LLCFDLLSDLIS---AIDEEPK--ESILLWQRKCEDALYSLLI--L 75 (1091)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~f~~L~~L~~---~l~~~~k--~di~~~Q~~l~~~L~~~l~--~ 75 (1091)
.++.-||.=|.-||-++----++.|.. -.++-||+-+.. .+.+.|+ .+=+. .....+.+... .
T Consensus 109 ~v~k~fPh~V~~Le~il~lL~~~npss~~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt---~~i~rI~~~~~~Yl 185 (1133)
T KOG1943|consen 109 AVLKLFPHQVSDLEPILDLLERQNPSSFSDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKT---NVILRILSFFENYL 185 (1133)
T ss_pred hhHHhCCcHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHcCCCcccccCcccccCCc---hHHHHHHHHHHHHH
Confidence 456678999999998887665665543 356678876554 2333333 00000 23344444432 2
Q ss_pred CCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCC-CCChH--hHHHHHHHHHHHHHHHhhHHhhcHHHHHHHH
Q 001368 76 GARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGK-KSEPQ--KVAGAAQCLGELYRQFGRRITSGLLETTIIA 152 (1091)
Q Consensus 76 ~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K-~~sp~--~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~l 152 (1091)
...+|.|+..+.|++++|++-|.+..+. ...+++-+-+ ...+. .+.+-+..+.++|+..-|..-.. .+...
T Consensus 186 ~~~~~~r~~aalllsk~~sR~D~~~~~~---~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~---~~~~~ 259 (1133)
T KOG1943|consen 186 ISSGILRRSAALLLSKLFSRTDVKDLLL---SFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLP---YSDTG 259 (1133)
T ss_pred hccchhHHHHHHHHHHHcccccHHHHHH---HHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHH---Hhhhh
Confidence 2334999999999999999999987743 4444433333 32333 23467777788888777775333 33344
Q ss_pred HHHhcc----CcHHHHHHHHHHHHHHHhcCCC------C-----------------------------------Cc--hh
Q 001368 153 AKLMKF----NEEFVRQEALLLLQNALEGSGG------S-----------------------------------AA--AS 185 (1091)
Q Consensus 153 lK~lK~----~~a~~R~~~l~~L~kil~g~g~------~-----------------------------------~~--~~ 185 (1091)
++.+-. ++.+ ...-+.+-|++..+|= + .+ +.
T Consensus 260 ~r~L~~~~~~~d~~--~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~e 337 (1133)
T KOG1943|consen 260 LRMLSVCRESNDGQ--SLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPE 337 (1133)
T ss_pred hHhhcccccccccH--hHHHHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHH
Confidence 444432 2222 1222344454443331 1 00 13
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC-cccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhcc
Q 001368 186 AYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC-LGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGM 264 (1091)
Q Consensus 186 ~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~-~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~ 264 (1091)
+.-.+.+. .=++++|++..||-+||+-+.-+.... |+ +-..-++++.. +|-..| ++..=|-+--.||++.-.+.
T Consensus 338 ivE~vie~-Lls~l~d~dt~VrWSaAKg~grvt~rl-p~~Lad~vi~svid-~~~p~e--~~~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 338 IVEFVIEH-LLSALSDTDTVVRWSAAKGLGRVTSRL-PPELADQVIGSVID-LFNPAE--DDSAWHGACLALAELALRGL 412 (1133)
T ss_pred HHHHHHHH-HHHhccCCcchhhHHHHHHHHHHHccC-cHHHHHHHHHHHHH-hcCcCC--chhHHHHHHHHHHHHHhcCC
Confidence 34456664 556899999999999999999998886 42 22233445555 444455 44456655555666553332
Q ss_pred CCCCcCCCCCCCCCCCCCChHHHHHHHhhh--hhcc--cCCCCcchhHH-HHHHHHHHHHHHhccccCCCCchhhHHHHH
Q 001368 265 NPQAQVQPKGKGPFPPAKKLEGGLQRHLAL--PFTR--ANGAKSKNMRV-NLTLSWVYFLQAIRLKYFHPDSELQDYALQ 339 (1091)
Q Consensus 265 ~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~--~f~r--~~~~~~r~~R~-Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~ 339 (1091)
-. ..++++++- .+.. .|-. +.-+++..||= ++..+|. |.+.-.++ .+..|+..
T Consensus 413 Ll--------------ps~l~dVvp-lI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WA-f~Rays~~------~l~p~l~~ 470 (1133)
T KOG1943|consen 413 LL--------------PSLLEDVVP-LILKALHYDVRRGQHSVGQHVRDAACYVCWA-FARAYSPS------DLKPVLQS 470 (1133)
T ss_pred cc--------------hHHHHHHHH-HHHHHhhhhhhhcccccccchHHHHHHHHHH-HHhcCChh------hhhHHHHH
Confidence 21 125677663 2222 2422 22234566664 5555554 44544432 24557765
Q ss_pred HHHHhccCCCccH--HHHHHHHHHHHHhhhccCCcH-HHHHHHHHHHhhcccCCCChhHHH--HHHHHHHHHHHHhCCCc
Q 001368 340 VMDMLRADIFVDS--HALACVLYILRIGVTDQMTEP-TQRSFLVFLGKQLQAVDASPFMKI--AALRTLSYTLKTLGEVP 414 (1091)
Q Consensus 340 i~~ll~~~~~~~~--~~r~~v~~ILr~~i~~~LgE~-~Q~~~~~~l~~~~~~~~~s~~~lv--~aL~el~~Ll~~LGsa~ 414 (1091)
+...+....-.|+ ++||...=.|...||++ |+. -=++++.. ++...-.+-++-++. ....+..
T Consensus 471 L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~-~n~p~Gi~Lis~-~dy~sV~~rsNcy~~l~~~ia~~~---------- 538 (1133)
T KOG1943|consen 471 LASALLIVALFDREVNCRRAASAALQENVGRQ-GNFPHGISLIST-IDYFSVTNRSNCYLDLCVSIAEFS---------- 538 (1133)
T ss_pred HHHHHHHHHhcCchhhHhHHHHHHHHHHhccC-CCCCCchhhhhh-cchhhhhhhhhHHHHHhHHHHhhh----------
Confidence 6666654444444 68888888888888742 222 00111111 010100111111111 1111111
Q ss_pred hhhHHHHHHHHH-HHhcCCchHHHHHHHHHHHHHHHhCCcchh-hHHHHHHHHHHhhhhhhccccCCcccchhhhhchHH
Q 001368 415 SEFKEVLDSTVV-AAVSHSSQLVRIEAALTLRALAEVDPTCVS-GLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQA 492 (1091)
Q Consensus 415 ~~~~~~l~d~l~-~ll~hps~svRi~AA~cLr~~~~a~P~~~~-~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a 492 (1091)
...+-+.+.++ .-+.|=+-.+|-.|||||+.+...-|.+.. ..+...++... +..+.--||+-
T Consensus 539 -~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l--------------s~~~~~r~g~~ 603 (1133)
T KOG1943|consen 539 -GYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL--------------SKDASMRHGVF 603 (1133)
T ss_pred -hHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc--------------CCChHHhhhhH
Confidence 12333444444 449999999999999999999999898766 44443333321 11134459999
Q ss_pred HHHHHHHhhcCCC
Q 001368 493 TVVAALIFISPKL 505 (1091)
Q Consensus 493 ~alAALl~~~~~~ 505 (1091)
.+.+-++.+-...
T Consensus 604 la~~ev~~~~~~l 616 (1133)
T KOG1943|consen 604 LAAGEVIGALRKL 616 (1133)
T ss_pred HHHHHHHHHhhhh
Confidence 9999999888755
No 22
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.48 E-value=1.6 Score=54.02 Aligned_cols=334 Identities=16% Similarity=0.170 Sum_probs=198.0
Q ss_pred CCchhhHHHHHHHHHHhhcCCcchhHHhHH-HHH-HhhhcC-CCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHH
Q 001368 77 ARRPVRHLASVAMGRIISKGDNISVYSRVS-SLQ-GFLSDG-KKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAA 153 (1091)
Q Consensus 77 ~g~P~R~l~a~cla~l~~~GD~~~lfdtvn-~l~-~iL~~~-K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~ll 153 (1091)
-++|-|+..+....++++.--+..+=++.. .+. +|+.+= .++.... --+-++|.+-.++|..+--..+-+|+.++
T Consensus 728 e~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~--vml~gfg~V~~~lg~r~kpylpqi~stiL 805 (1172)
T KOG0213|consen 728 EPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS--VMLLGFGTVVNALGGRVKPYLPQICSTIL 805 (1172)
T ss_pred ccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh--hhhhhHHHHHHHHhhccccchHHHHHHHH
Confidence 556778888888888887532222222221 111 222210 1111111 25689999999999999999999999999
Q ss_pred HHhccCcHHHHHHHHHHH---HHHHhcCCC----------------CCchhHHHHHHHHHHHHhc---------------
Q 001368 154 KLMKFNEEFVRQEALLLL---QNALEGSGG----------------SAAASAYSEAFRLIMRFAI--------------- 199 (1091)
Q Consensus 154 K~lK~~~a~~R~~~l~~L---~kil~g~g~----------------~~~~~~~~di~K~~~r~~~--------------- 199 (1091)
+.+++..+.+|..+..+. .++++.+|. .-++.+..-|.+ ++++..
T Consensus 806 ~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILg-AikaI~nvigm~km~pPi~dl 884 (1172)
T KOG0213|consen 806 WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILG-AIKAIVNVIGMTKMTPPIKDL 884 (1172)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHH-HHHHHHHhccccccCCChhhh
Confidence 999998888998876654 455555531 123445666666 344432
Q ss_pred --------cCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccC---CChhHHHHHHHHHHHHHHhccCCCC
Q 001368 200 --------VDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIED---PIASVRDAFAEALGSLLALGMNPQA 268 (1091)
Q Consensus 200 --------~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~---s~~~vR~a~A~~Lg~lLa~~~~~~~ 268 (1091)
..|---|+..+.+-+..+...++.|...-|. ..+||-.+|. -+-+.|+++-..+|-+. ++.-|..
T Consensus 885 lPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREW---MRIcfeLlelLkahkK~iRRaa~nTfG~Ia-kaIGPqd 960 (1172)
T KOG0213|consen 885 LPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREW---MRICFELLELLKAHKKEIRRAAVNTFGYIA-KAIGPQD 960 (1172)
T ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HhcCHHH
Confidence 2233347777777777777776555444433 4577776665 77889999988888754 3332221
Q ss_pred cCC---CCCC---CCCCCCCCh------H-----HHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCc
Q 001368 269 QVQ---PKGK---GPFPPAKKL------E-----GGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDS 331 (1091)
Q Consensus 269 ~~~---~~~k---~~~~~~k~~------e-----~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~ 331 (1091)
.-. ..-| ++...--++ | -++ --|..-|--+ .-.|.-||--+..+||...|.-
T Consensus 961 VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVL-PalmneYrtP----e~nVQnGVLkalsf~Feyigem------ 1029 (1172)
T KOG0213|consen 961 VLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVL-PALMNEYRTP----EANVQNGVLKALSFMFEYIGEM------ 1029 (1172)
T ss_pred HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhh-HHHHhhccCc----hhHHHHhHHHHHHHHHHHHHHH------
Confidence 000 0000 000000000 0 011 1222333222 3567789999999999998852
Q ss_pred hhhHHHHHHHHHhccC-CCccH-HHHHHHHHHHHHhh-h--ccCCcHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHH
Q 001368 332 ELQDYALQVMDMLRAD-IFVDS-HALACVLYILRIGV-T--DQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYT 406 (1091)
Q Consensus 332 ~~~~y~~~i~~ll~~~-~~~~~-~~r~~v~~ILr~~i-~--~~LgE~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~L 406 (1091)
-..|.-.|.-++... ..-|. |++...+-| +... + ....|.+-..++..++-.+ -|++||+.-...+.+-++
T Consensus 1030 -skdYiyav~PlleDAlmDrD~vhRqta~~~I-~Hl~Lg~~g~g~eda~iHLLN~iWpNI--le~sPhviqa~~e~~eg~ 1105 (1172)
T KOG0213|consen 1030 -SKDYIYAVTPLLEDALMDRDLVHRQTAMNVI-KHLALGVPGTGCEDALIHLLNLIWPNI--LETSPHVIQAFDEAMEGL 1105 (1172)
T ss_pred -hhhHHHHhhHHHHHhhccccHHHHHHHHHHH-HHHhcCCCCcCcHHHHHHHHHHhhhhh--cCCChHHHHHHHHHHHHH
Confidence 146775555555421 12234 333222222 3322 2 2335555566666654432 689999888999999999
Q ss_pred HHHhCCCchhhHHHHHHHHHHHhcCCchHHHH
Q 001368 407 LKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRI 438 (1091)
Q Consensus 407 l~~LGsa~~~~~~~l~d~l~~ll~hps~svRi 438 (1091)
=..||... +..-+++=|-||+..||=
T Consensus 1106 r~~Lg~~~------~~~Y~~QGLFHParkVR~ 1131 (1172)
T KOG0213|consen 1106 RVALGPQA------MLKYCLQGLFHPARKVRK 1131 (1172)
T ss_pred HHHhchHH------HHHHHHHhccCcHHHHHH
Confidence 99998754 677888899999999994
No 23
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.43 E-value=0.064 Score=70.05 Aligned_cols=158 Identities=23% Similarity=0.200 Sum_probs=84.3
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHH--------------
Q 001368 68 ALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGEL-------------- 133 (1091)
Q Consensus 68 ~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l-------------- 133 (1091)
.|...+. .+-|.+|..+.+.|..+- .|+.. .+...|+ |.+|..+.+|+..||.+
T Consensus 688 ~L~~~L~-~~d~~VR~~A~~aL~~~~-~~~~~-------~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~ 755 (897)
T PRK13800 688 ALRDHLG-SPDPVVRAAALDVLRALR-AGDAA-------LFAAALG---DPDHRVRIEAVRALVSVDDVESVAGAATDEN 755 (897)
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHhhc-cCCHH-------HHHHHhc---CCCHHHHHHHHHHHhcccCcHHHHHHhcCCC
Confidence 3444443 355677888887777753 23321 2233333 44555444666666642
Q ss_pred ---HHHHhhHHh---hcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHH
Q 001368 134 ---YRQFGRRIT---SGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVR 207 (1091)
Q Consensus 134 ---~~~~G~~l~---s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr 207 (1091)
=..+.+.++ ..-+..+..+.+.++..++.+|.+++.+|.+ .|... ..... ...++.|.+..||
T Consensus 756 ~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~----~g~~~--~~~~~-----l~~aL~d~d~~VR 824 (897)
T PRK13800 756 REVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAE----LGCPP--DDVAA-----ATAALRASAWQVR 824 (897)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHh----cCCcc--hhHHH-----HHHHhcCCChHHH
Confidence 011111111 1122234556666666667777777777766 33221 11111 2224667677777
Q ss_pred HHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHH
Q 001368 208 IAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSL 259 (1091)
Q Consensus 208 ~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~l 259 (1091)
.+|++.|..+-. +.....+.+.+++++..||.+++..||.+
T Consensus 825 ~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 825 QGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 777776654432 22446667777777778888887777774
No 24
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.38 E-value=0.055 Score=58.67 Aligned_cols=173 Identities=20% Similarity=0.154 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhccC----ChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhc-CCcchhHHhHHHHHH-hhh
Q 001368 40 FDLLSDLISAIDEE----PKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISK-GDNISVYSRVSSLQG-FLS 113 (1091)
Q Consensus 40 f~~L~~L~~~l~~~----~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~-GD~~~lfdtvn~l~~-iL~ 113 (1091)
.+-|..|.+.+..- ..+++.+.-+.+...+.+.+. ..+.-+-+....|+..++.. |+.+.-| ++.+.. +++
T Consensus 25 ~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-d~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~~~l~~Ll~ 101 (228)
T PF12348_consen 25 VEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS-DLRSKVSKTACQLLSDLARQLGSHFEPY--ADILLPPLLK 101 (228)
T ss_dssp HHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHH
Confidence 44455555555433 233333333333344443333 34444567778888888875 5554433 223332 222
Q ss_pred cCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHH-HHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC---c-hhHHH
Q 001368 114 DGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLET-TIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA---A-ASAYS 188 (1091)
Q Consensus 114 ~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~-~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~---~-~~~~~ 188 (1091)
--.+.....+-+|..||..+.+..+ ..+.+ ...+...+++..+.+|..++..+..++...|... . ....+
T Consensus 102 ~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 176 (228)
T PF12348_consen 102 KLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLK 176 (228)
T ss_dssp GGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHH
T ss_pred HHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHH
Confidence 1112223333479999998888655 12333 4555666777789999999999999999999222 1 22346
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q 001368 189 EAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 189 di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
++.+ ....+++|.+..||.+|-+|+..+..+.
T Consensus 177 ~l~~-~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 177 QLVK-ALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHH-HHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 7778 4666799999999999999999998875
No 25
>PTZ00429 beta-adaptin; Provisional
Probab=96.33 E-value=0.2 Score=63.76 Aligned_cols=222 Identities=10% Similarity=0.042 Sum_probs=130.6
Q ss_pred CChHHHHHHHHHHHHHHhcCCcchHHHHHH------------------HhhcccccCCcchhHHHHHHHHHHHhhcCCcc
Q 001368 819 LGSEVLNSIQAIFLSILAEGDICASQRRAL------------------LLGDLTVVTDANYAGSIALAIGCIHRSAGGMA 880 (1091)
Q Consensus 819 l~~~v~~~~~~li~~~l~~~d~~~~~r~aa------------------~l~~lv~~~dp~~Ra~~aLALG~I~r~vGgma 880 (1091)
.+++..-++...+++-+.++|+ ..|+.| .+.+.....+|+.|-..|+++..||+..+.+.
T Consensus 98 ~~pelalLaINtl~KDl~d~Np--~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv 175 (746)
T PTZ00429 98 LQPEKALLAVNTFLQDTTNSSP--VVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLF 175 (746)
T ss_pred cChHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccc
Confidence 3566666666666776777765 356655 23334567899999999999999999877652
Q ss_pred cccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHhccCCCCCchhHHHHHHHHHHHHH
Q 001368 881 LSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVA 960 (1091)
Q Consensus 881 s~~~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~~~~~~igr~l~alI~ 960 (1091)
- -...+..|..|.+|++|.|..-|+.+|.-+-+..+-.+ +.+-..+.+++-.-+.. .+-.| ..+++.+..
T Consensus 176 ~---~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l----~l~~~~~~~Ll~~L~e~-~EW~Q--i~IL~lL~~ 245 (746)
T PTZ00429 176 Y---QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI----ESSNEWVNRLVYHLPEC-NEWGQ--LYILELLAA 245 (746)
T ss_pred c---ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh----HHHHHHHHHHHHHhhcC-ChHHH--HHHHHHHHh
Confidence 1 12345667778899999999999999999877633222 22233333333211111 11122 255555533
Q ss_pred hhCCCCCCchh---hhHhhhc--cccCCCchhHHHHHhHHhhhcc-cCccchhhHHHHHH---HhhcCCChHHHHHHHHH
Q 001368 961 VLGPELAPGSI---FFSRCKV--SAWQCSSPKWSVRFTQQLVLFA-PQAVSVHSHVQTLL---STLSSRQPILRHLAVST 1031 (1091)
Q Consensus 961 ~LGPeLq~~s~---~~~~~~~--~~~~~~~~~eai~clQqL~lFA-P~~v~~~~lV~~L~---~~L~S~~~~Lr~aAv~c 1031 (1091)
..|+ +... ++..+.. .+.+..+-.++++++=++.-+- |..+ ...+.++. ..|.|+.+.+|=+++..
T Consensus 246 -y~P~--~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~--~~~~~rl~~pLv~L~ss~~eiqyvaLr~ 320 (746)
T PTZ00429 246 -QRPS--DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELI--ERCTVRVNTALLTLSRRDAETQYIVCKN 320 (746)
T ss_pred -cCCC--CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHH--HHHHHHHHHHHHHhhCCCccHHHHHHHH
Confidence 4553 2222 3333221 1223334488888877765432 2211 22222222 25577889999999999
Q ss_pred HHHHHccCchhhhhhchHHHHHHhhccC
Q 001368 1032 LRHLIEKDPDSVIEERIEGNLFHMLDEE 1059 (1091)
Q Consensus 1032 LrqL~qr~a~~v~~~~le~~Lf~~LD~e 1059 (1091)
++.++++++..+... -+..|...++-
T Consensus 321 I~~i~~~~P~lf~~~--~~~Ff~~~~Dp 346 (746)
T PTZ00429 321 IHALLVIFPNLLRTN--LDSFYVRYSDP 346 (746)
T ss_pred HHHHHHHCHHHHHHH--HHhhhcccCCc
Confidence 999999998655431 34444555443
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.33 E-value=0.84 Score=55.98 Aligned_cols=187 Identities=18% Similarity=0.157 Sum_probs=113.3
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCc-------chhHHhHHHHHHhhhcCC
Q 001368 44 SDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDN-------ISVYSRVSSLQGFLSDGK 116 (1091)
Q Consensus 44 ~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~-------~~lfdtvn~l~~iL~~~K 116 (1091)
+-|++.+...+.+++ ..+..+.|..-|.+ |-|.+|.+..+.+.++-...+. ..+|. .+...|. ..
T Consensus 60 ~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~---~i~~~L~-~~ 131 (503)
T PF10508_consen 60 DILKRLLSALSPDSL---LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP---LIIQCLR-DP 131 (503)
T ss_pred HHHHHHHhccCHHHH---HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH---HHHHHHc-CC
Confidence 346777777777776 44455666655554 6689999998888887654433 22333 3333343 22
Q ss_pred CCChHhHHHHHHHHHHHHHHHhhHHhhc-HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHH--HHHH
Q 001368 117 KSEPQKVAGAAQCLGELYRQFGRRITSG-LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSE--AFRL 193 (1091)
Q Consensus 117 ~~sp~~~~aA~~cLG~l~~~~G~~l~s~-~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~d--i~K~ 193 (1091)
|.+- .. .|+.+|..+-+.-. .+-.. -++....+-+++++..+.+|..++.++-++.+...... ....+ ++..
T Consensus 132 d~~V-a~-~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~--~~~~~sgll~~ 206 (503)
T PF10508_consen 132 DLSV-AK-AAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA--EAVVNSGLLDL 206 (503)
T ss_pred cHHH-HH-HHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH--HHHHhccHHHH
Confidence 2222 22 46666665543211 11111 11125556666766578889989998888866444333 23333 6665
Q ss_pred HHHHhccCcchHHHHHHHHHHHHHHhhc--CCCc-ccchhhhHHHHHHHhccCC
Q 001368 194 IMRFAIVDKSFVVRIAGARCLKAFAHIG--GPCL-GVGELDNSATHCVKAIEDP 244 (1091)
Q Consensus 194 ~~r~~~~Dks~~Vr~aAa~cL~~l~~~~--~~~~-~~~dlE~l~tl~~K~le~s 244 (1091)
+.+ .+.|.+..||..|++++..|+... ..|+ ..+=++.+.......-+++
T Consensus 207 ll~-eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp 259 (503)
T PF10508_consen 207 LLK-ELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDP 259 (503)
T ss_pred HHH-HhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCC
Confidence 555 477899999999999999998742 2334 4555667777777766666
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.23 E-value=2 Score=59.90 Aligned_cols=190 Identities=13% Similarity=0.057 Sum_probs=118.0
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHh---HHHHHHhhhcCCCCChHhHHHHHHHHHHHHHH---H
Q 001368 64 KCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSR---VSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQ---F 137 (1091)
Q Consensus 64 ~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdt---vn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~---~ 137 (1091)
.++..|.+++.+.-++|+...+..+|+.+|....-..++.. +-.|.++|. . .+...+-.|+.||..+-.. .
T Consensus 362 ~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~-~--~~~evQ~~Av~aL~~L~~~~~e~ 438 (2102)
T PLN03200 362 VIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLIT-M--ATADVQEELIRALSSLCCGKGGL 438 (2102)
T ss_pred ccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhc-c--CCHHHHHHHHHHHHHHhCCCHHH
Confidence 45678888888887777788999999888876544444433 234666665 1 1233333577777655521 1
Q ss_pred hhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 001368 138 GRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAF 217 (1091)
Q Consensus 138 G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l 217 (1091)
=+.+. -...+..+.+.|++.....|..+..+++.+..|.......-+.........+ .+...+..+|..|+.++..+
T Consensus 439 ~~aIi--~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~-LL~s~~~~iqeeAawAL~NL 515 (2102)
T PLN03200 439 WEALG--GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQ-LLETGSQKAKEDSATVLWNL 515 (2102)
T ss_pred HHHHH--HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 11121 1225788999999877888889999998876533211100011122221122 25556778999999999888
Q ss_pred HhhcCCCcccchh--hhHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 001368 218 AHIGGPCLGVGEL--DNSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1091)
Q Consensus 218 ~~~~~~~~~~~dl--E~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa 261 (1091)
..+. +.. ..-+ .......++.+++.+..++..++..|..++.
T Consensus 516 a~~~-~qi-r~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 516 CCHS-EDI-RACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred hCCc-HHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 7642 110 0112 1344567788999999999999999999874
No 28
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.16 E-value=1.7 Score=60.47 Aligned_cols=334 Identities=18% Similarity=0.161 Sum_probs=192.0
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhH----Hh
Q 001368 67 DALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR----IT 142 (1091)
Q Consensus 67 ~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~----l~ 142 (1091)
..|.+++..+ .+=+++.++..|..+-..||...+ ..+.+++. + +++.....++..||.+....... .+
T Consensus 533 ppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I----~~Lv~LLl-s--dd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 533 PALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATI----SQLTALLL-G--DLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHH----HHHHHHhc-C--CChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 3455555544 344578888888888888888644 55666664 2 23444435777887775522221 11
Q ss_pred hcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcC
Q 001368 143 SGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGG 222 (1091)
Q Consensus 143 s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~ 222 (1091)
......+..+.+++++.+...+..+..++.++..|-.+-...-+-.++..-..+. +.+.+..|+..||.+|.++++..
T Consensus 605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L-Lss~~~~v~keAA~AL~nL~~~~- 682 (2102)
T PLN03200 605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL-LTNNTEAVATQSARALAALSRSI- 682 (2102)
T ss_pred hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH-HhcCChHHHHHHHHHHHHHHhCC-
Confidence 1223567788999998888888899999999988554322222222333322332 66788899999999999999743
Q ss_pred CCcccch-hh-hHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccC
Q 001368 223 PCLGVGE-LD-NSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRAN 300 (1091)
Q Consensus 223 ~~~~~~d-lE-~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~ 300 (1091)
..-+... .+ .......+.+.+.|..++..++..|+.++-....- .++ ..
T Consensus 683 ~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~-------------------~ei---~~------- 733 (2102)
T PLN03200 683 KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA-------------------AEA---LA------- 733 (2102)
T ss_pred CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH-------------------HHH---Hh-------
Confidence 1100000 11 24455677888899999999999999988321110 000 00
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccccCCCCchh-hHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCcHHHHHHH
Q 001368 301 GAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSEL-QDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFL 379 (1091)
Q Consensus 301 ~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~-~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q~~~~ 379 (1091)
.|.....+.+++.= . ... .+=...+..+..+.+..|... .++- +.-+.
T Consensus 734 --------~~~I~~Lv~lLr~G-~------~~~k~~Aa~AL~~L~~~~~~~~~~~----~~~~------------~~g~v 782 (2102)
T PLN03200 734 --------EDIILPLTRVLREG-T------LEGKRNAARALAQLLKHFPVDDVLK----DSVQ------------CRGTV 782 (2102)
T ss_pred --------cCcHHHHHHHHHhC-C------hHHHHHHHHHHHHHHhCCChhHHHH----HHHH------------HhCcH
Confidence 01112233332221 0 001 111212223332222111110 1110 11122
Q ss_pred HHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCc----hh---hHH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 001368 380 VFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVP----SE---FKE--VLDSTVVAAVSHSSQLVRIEAALTLRALAEV 450 (1091)
Q Consensus 380 ~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~----~~---~~~--~l~d~l~~ll~hps~svRi~AA~cLr~~~~a 450 (1091)
..+...+++.|.......-+|+.++.|.+. |... ++ +.| .=.|+|++.|.|.+..++=-|-..|-.+|.-
T Consensus 783 ~~l~~~L~~~~~~~~~~~~al~~l~~l~~~-~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 783 LALVDLLNSTDLDSSATSEALEALALLART-KGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHHHHHhh-cccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence 233333445555543344577777777763 2211 22 122 1367899999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHhhhh
Q 001368 451 DPTCVSGLITYGVTTLNALRE 471 (1091)
Q Consensus 451 ~P~~~~~ll~~~~~~L~~~~~ 471 (1091)
.|.-+..+|.+--.|+.++-.
T Consensus 862 ~~~~~~~~~~~~~~~~~~~~~ 882 (2102)
T PLN03200 862 QPVVLGDLIANASKCISSLAD 882 (2102)
T ss_pred ChhHHHHHHhcccchHHHHHH
Confidence 999999999877777766643
No 29
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=5.9 Score=49.67 Aligned_cols=180 Identities=13% Similarity=0.039 Sum_probs=127.1
Q ss_pred CCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCC-CCChH--hHHHHHHHHHHHHHHHhh-HHhhcHHHHHHHH
Q 001368 77 ARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGK-KSEPQ--KVAGAAQCLGELYRQFGR-RITSGLLETTIIA 152 (1091)
Q Consensus 77 ~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K-~~sp~--~~~aA~~cLG~l~~~~G~-~l~s~~~e~~~~l 152 (1091)
|-|-.+...|.|+|.|=..-=+-..|- .+-..+.++- +..|. |. +.+..||-+-+..-. -+.....++++.+
T Consensus 102 ~ep~~~s~Aaq~va~IA~~ElP~n~wp---~li~~lv~nv~~~~~~~~k~-~slealGyice~i~pevl~~~sN~iLtaI 177 (859)
T KOG1241|consen 102 PEPRRPSSAAQCVAAIACIELPQNQWP---ELIVTLVSNVGEEQASMVKE-SSLEALGYICEDIDPEVLEQQSNDILTAI 177 (859)
T ss_pred CCCCccchHHHHHHHHHHhhCchhhCH---HHHHHHHHhcccccchHHHH-HHHHHHHHHHccCCHHHHHHHHhHHHHHH
Confidence 444447789999999987766666776 4444444332 22222 45 799999999886543 5567788899999
Q ss_pred HHHhccCc--HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchh
Q 001368 153 AKLMKFNE--EFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGEL 230 (1091)
Q Consensus 153 lK~lK~~~--a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dl 230 (1091)
.-.++++| +.+|-+++.+|-..++-.+.--....-|+++=++.=-+.+-.+..||.||..||-.+..-.+.|+-..=.
T Consensus 178 v~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~ 257 (859)
T KOG1241|consen 178 VQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYME 257 (859)
T ss_pred HhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998865 6799999999999999777333333455555544444566678899999999998776644344433334
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 231 DNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 231 E~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
+++-.+-.+++.+.|++|-.-.=+-...+.
T Consensus 258 ~alfaitl~amks~~deValQaiEFWstic 287 (859)
T KOG1241|consen 258 QALFAITLAAMKSDNDEVALQAIEFWSTIC 287 (859)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 568888889999999988877777776554
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=96.05 E-value=6.9 Score=50.26 Aligned_cols=160 Identities=16% Similarity=0.044 Sum_probs=103.2
Q ss_pred chhhHHHHHHHHHHhhcC-CcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHH-HHhhHHhhcHHHHHHHHHHHh
Q 001368 79 RPVRHLASVAMGRIISKG-DNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYR-QFGRRITSGLLETTIIAAKLM 156 (1091)
Q Consensus 79 ~P~R~l~a~cla~l~~~G-D~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~-~~G~~l~s~~~e~~~~llK~l 156 (1091)
.-.|+..-+++......| |-..+|-.|- ..+. .+| -.-|+ |+.+|- .+++.--...-.+++.+.|-+
T Consensus 46 ~~~kk~alKkvIa~mt~G~DvS~LF~dVv---k~~~-S~d-~elKK------LvYLYL~~ya~~~pelalLaINtl~KDl 114 (746)
T PTZ00429 46 SYRKKAAVKRIIANMTMGRDVSYLFVDVV---KLAP-STD-LELKK------LVYLYVLSTARLQPEKALLAVNTFLQDT 114 (746)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHH---HHhC-CCC-HHHHH------HHHHHHHHHcccChHHHHHHHHHHHHHc
Confidence 344556666677777666 3344444222 2222 223 22233 234443 345444444567899999999
Q ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHH
Q 001368 157 KFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATH 236 (1091)
Q Consensus 157 K~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl 236 (1091)
+...+.+|+-+++++.+ +. .+.+...+.. ..|.+++|++..||.+|+-|+..+++..+..+...+ +...
T Consensus 115 ~d~Np~IRaLALRtLs~----Ir---~~~i~e~l~~-~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~---~~~~ 183 (746)
T PTZ00429 115 TNSSPVVRALAVRTMMC----IR---VSSVLEYTLE-PLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQD---FKKD 183 (746)
T ss_pred CCCCHHHHHHHHHHHHc----CC---cHHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccc---hHHH
Confidence 98889999999998887 33 2455666666 467789999999999999999999987632222222 2233
Q ss_pred HHHhccCCChhHHHHHHHHHHHHH
Q 001368 237 CVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 237 ~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
..+.+++.|..|-..+-.+|-++-
T Consensus 184 L~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 184 LVELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHH
Confidence 445688999988888877777764
No 31
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.99 E-value=3.5 Score=47.50 Aligned_cols=228 Identities=14% Similarity=0.068 Sum_probs=127.6
Q ss_pred CCChHhHHHHHHHHHHHHHH--HhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHH
Q 001368 117 KSEPQKVAGAAQCLGELYRQ--FGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA-AASAYSEAFRL 193 (1091)
Q Consensus 117 ~~sp~~~~aA~~cLG~l~~~--~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~-~~~~~~di~K~ 193 (1091)
+++.++|.+|+.-+-.++.. ..+.+..-....+..+.|.+|+....=+.-+.+++.=++-.+|.+. .+.+++++..
T Consensus 54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~- 132 (309)
T PF05004_consen 54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKP- 132 (309)
T ss_pred hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH-
Confidence 33466677888888877754 5677777788889999999998544445566677777766666333 4678888888
Q ss_pred HHHHhccCcc--hHHHHHHHHHHHHHHhhcCCCcccchhh---hHHHHHHHhc----cCC--------ChhHHHHHHHHH
Q 001368 194 IMRFAIVDKS--FVVRIAGARCLKAFAHIGGPCLGVGELD---NSATHCVKAI----EDP--------IASVRDAFAEAL 256 (1091)
Q Consensus 194 ~~r~~~~Dks--~~Vr~aAa~cL~~l~~~~~~~~~~~dlE---~l~tl~~K~l----e~s--------~~~vR~a~A~~L 256 (1091)
.++..+.|.+ ..+|.+++.||..+.--++. ...+.+ .....+|... ++. +..+..++=.++
T Consensus 133 ~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~--d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 133 VLKRILTDSSASPKARAACLEALAICTFVGGS--DEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 5777788844 56777878888665443211 223333 2233233321 221 345666666666
Q ss_pred HHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcc---ccCCCCchh
Q 001368 257 GSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRL---KYFHPDSEL 333 (1091)
Q Consensus 257 g~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~---~~le~~~~~ 333 (1091)
|-++ +..|.. . -...+++.+. .|+. .+.+ ...+||++-.++.+.++-.... .|..+ +.
T Consensus 211 ~lLl--t~~~~~---------~-~~~~~~~~~~-~l~~-lL~s---~d~~VRiAAGEaiAll~E~~~~~~~~~~~~--~~ 271 (309)
T PF05004_consen 211 ALLL--TTLPDS---------K-LEDLLEEALP-ALSE-LLDS---DDVDVRIAAGEAIALLYELARDHEEDFLYE--DM 271 (309)
T ss_pred HHHH--hcCCHH---------H-HHHHHHHHHH-HHHH-HhcC---CCHHHHHHHHHHHHHHHHHhhccccccccc--CH
Confidence 6555 222220 0 0011233332 3333 3333 5799999888888777666442 34332 23
Q ss_pred hHHHHHHHHHhcc-CCCccHHHHHHHHHHHHHhh
Q 001368 334 QDYALQVMDMLRA-DIFVDSHALACVLYILRIGV 366 (1091)
Q Consensus 334 ~~y~~~i~~ll~~-~~~~~~~~r~~v~~ILr~~i 366 (1091)
......+.++... +.+..---||--.-.+|+++
T Consensus 272 ~~l~~~l~~La~dS~K~~sKkdrk~qRs~Frdil 305 (309)
T PF05004_consen 272 EELLEQLRELATDSSKSRSKKDRKQQRSSFRDIL 305 (309)
T ss_pred HHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 4455444444442 22322223444445555544
No 32
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.72 E-value=0.76 Score=52.82 Aligned_cols=138 Identities=17% Similarity=0.092 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHh--hHHhhcHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHHhcCCCCCc--h---hHHHHHHHHH
Q 001368 124 AGAAQCLGELYRQFG--RRITSGLLETTIIAAKLMKFN--EEFVRQEALLLLQNALEGSGGSAA--A---SAYSEAFRLI 194 (1091)
Q Consensus 124 ~aA~~cLG~l~~~~G--~~l~s~~~e~~~~llK~lK~~--~a~~R~~~l~~L~kil~g~g~~~~--~---~~~~di~K~~ 194 (1091)
..|+.++|-+.-++| ...-..+.+....+.+.++.. ....|..++.+|+-+.--.|...+ . .....||...
T Consensus 104 ~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~ 183 (309)
T PF05004_consen 104 ALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLS 183 (309)
T ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH
Confidence 368889998888877 777777888888888888863 467899999999876553332221 1 2344455531
Q ss_pred HHHhccCc---------chHHHHHHHHHHHHHHhhcCCC-cccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhcc
Q 001368 195 MRFAIVDK---------SFVVRIAGARCLKAFAHIGGPC-LGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGM 264 (1091)
Q Consensus 195 ~r~~~~Dk---------s~~Vr~aAa~cL~~l~~~~~~~-~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~ 264 (1091)
. .-.|. +..|..||..+|..|+..-++. +. ..++.........|++++-+||.|++++||-+.=...
T Consensus 184 -~-~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 184 -I-LKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred -h-cCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 1 11222 3579999999999998764221 22 3346666777788999999999999999997754444
No 33
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=5.8 Score=48.69 Aligned_cols=333 Identities=16% Similarity=0.111 Sum_probs=187.2
Q ss_pred cCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHH
Q 001368 75 LGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAK 154 (1091)
Q Consensus 75 ~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK 154 (1091)
..|-+-+|+.++.|+..+-..-+...-=+....++..++ +.+..... .|...+.-+....|-+--.-.. .+..+.|
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~~~~-~aa~~~ag~v~g~~i~~~~~~~-~l~~l~~ 181 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT--STKIAERA-GAAYGLAGLVNGLGIESLKEFG-FLDNLSK 181 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc--cccHHHHh-hhhHHHHHHHcCcHHhhhhhhh-HHHHHHH
Confidence 345566699999999887765444444444456666665 22222222 4555555555544443332222 5666777
Q ss_pred HhccCcHHHHH-HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhH
Q 001368 155 LMKFNEEFVRQ-EALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNS 233 (1091)
Q Consensus 155 ~lK~~~a~~R~-~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l 233 (1091)
..+.-.+..|. ..+.++++....+|..- +.....++-.++- +.+|+.-.||-||.++..++.+...++ .. ..+
T Consensus 182 ai~dk~~~~~re~~~~a~~~~~~~Lg~~~-EPyiv~~lp~il~-~~~d~~~~Vr~Aa~~a~kai~~~~~~~-aV---K~l 255 (569)
T KOG1242|consen 182 AIIDKKSALNREAALLAFEAAQGNLGPPF-EPYIVPILPSILT-NFGDKINKVREAAVEAAKAIMRCLSAY-AV---KLL 255 (569)
T ss_pred HhcccchhhcHHHHHHHHHHHHHhcCCCC-CchHHhhHHHHHH-HhhccchhhhHHHHHHHHHHHHhcCcc-hh---hHh
Confidence 77765555555 59999999999999555 7778888875444 578999999999999999999985222 11 112
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHH---HHhhhhhcccCCCCcchhHHH
Q 001368 234 ATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQ---RHLALPFTRANGAKSKNMRVN 310 (1091)
Q Consensus 234 ~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~---~~Ls~~f~r~~~~~~r~~R~G 310 (1091)
..-.+..++.+.-.+-.++.+.+|.+... .|+ .++..|- .-++.--.. +..++|-.
T Consensus 256 lpsll~~l~~~kWrtK~aslellg~m~~~--ap~---------------qLs~~lp~iiP~lsevl~D----T~~evr~a 314 (569)
T KOG1242|consen 256 LPSLLGSLLEAKWRTKMASLELLGAMADC--APK---------------QLSLCLPDLIPVLSEVLWD----TKPEVRKA 314 (569)
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHh--chH---------------HHHHHHhHhhHHHHHHHcc----CCHHHHHH
Confidence 22223333333556778888888854422 121 1111110 111111111 34555554
Q ss_pred HHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhhcccCC
Q 001368 311 LTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVD 390 (1091)
Q Consensus 311 v~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~~~ 390 (1091)
=..|...|-... +|.+...|.-.+++-++.+. .+..+|+.-+.+.++-.-..+++---+.-.+-+.+..++
T Consensus 315 ~~~~l~~~~svi------dN~dI~~~ip~Lld~l~dp~---~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRs 385 (569)
T KOG1242|consen 315 GIETLLKFGSVI------DNPDIQKIIPTLLDALADPS---CYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERS 385 (569)
T ss_pred HHHHHHHHHHhh------ccHHHHHHHHHHHHHhcCcc---cchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhcc
Confidence 444555543333 22333455544555444333 233466666666666656666554444444433333333
Q ss_pred CC-hhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001368 391 AS-PFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALA 448 (1091)
Q Consensus 391 ~s-~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~ 448 (1091)
.+ +-..+..-.-++.|+..=- -..++...+...+-..+.-|-..||--|+.+|-...
T Consensus 386 t~~kr~t~~IidNm~~LveDp~-~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 386 TSIKRKTAIIIDNMCKLVEDPK-DLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred chhhhhHHHHHHHHHHhhcCHH-HHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 32 2223344555555552110 112456667888888899999999999999984444
No 34
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.71 E-value=0.11 Score=55.09 Aligned_cols=156 Identities=23% Similarity=0.231 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcC----------------CCCChHhHHHHHHHHHHHHHHHhhHHhhc
Q 001368 81 VRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDG----------------KKSEPQKVAGAAQCLGELYRQFGRRITSG 144 (1091)
Q Consensus 81 ~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~----------------K~~sp~~~~aA~~cLG~l~~~~G~~l~s~ 144 (1091)
+|-..-.||..+....|++.+|. .-..++=++ +|.+|+.|.+|+..|..|.+.-...+ ..
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~---yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L-~~ 77 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFG---YWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFL-AQ 77 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHh---hHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHH-HH
Confidence 57888899999999999999987 555555433 24456677889999998888632222 22
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC
Q 001368 145 LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC 224 (1091)
Q Consensus 145 ~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~ 224 (1091)
.+| ...+...+..|...+. .+.+++++........+++.++-....||+..|+..+ ||
T Consensus 78 Ae~-------------~~~~~~sFtslS~tLa--------~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~t-PY 135 (182)
T PF13251_consen 78 AEE-------------SKGPSGSFTSLSSTLA--------SMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQAT-PY 135 (182)
T ss_pred HHh-------------cCCCCCCcccHHHHHH--------HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccC-Ch
Confidence 221 1123334444544332 2345555543333344688999999999999999997 88
Q ss_pred c--ccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 001368 225 L--GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 225 ~--~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
= ..+=+..+.+-+.+.+.+.|.++|.+..-|+|.+++.
T Consensus 136 ~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 136 HRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred hhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 4 4444667888888889999999999999999999843
No 35
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.64 E-value=2.3 Score=55.43 Aligned_cols=277 Identities=16% Similarity=0.131 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC
Q 001368 145 LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC 224 (1091)
Q Consensus 145 ~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~ 224 (1091)
+-..+...+|.+|. .+.+.+++.+|+..-.-+ .|+...-.|.-- +=+.+.|....||+.|.+.|.++...- .-
T Consensus 423 ~vs~lts~IR~lk~--~~tK~~ALeLl~~lS~~i---~de~~LDRVlPY-~v~l~~Ds~a~Vra~Al~Tlt~~L~~V-r~ 495 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKT--IQTKLAALELLQELSTYI---DDEVKLDRVLPY-FVHLLMDSEADVRATALETLTELLALV-RD 495 (1431)
T ss_pred eHHHHHHHHHhhhc--chhHHHHHHHHHHHhhhc---chHHHHhhhHHH-HHHHhcCchHHHHHHHHHHHHHHHhhc-cC
Confidence 34456667777776 455778888888854432 256666666664 556789999999999988887766532 11
Q ss_pred cccch----hhhHHHHHHHhccC-CChhHHHHHHHHHHHHHHhccCCC--------Cc--CCCCC-CCCCCC-CCC---h
Q 001368 225 LGVGE----LDNSATHCVKAIED-PIASVRDAFAEALGSLLALGMNPQ--------AQ--VQPKG-KGPFPP-AKK---L 284 (1091)
Q Consensus 225 ~~~~d----lE~l~tl~~K~le~-s~~~vR~a~A~~Lg~lLa~~~~~~--------~~--~~~~~-k~~~~~-~k~---~ 284 (1091)
+..+| -|.+..-.-..+++ +...||.+.|.+||.+.-.++..- ++ ..|.. ..+... .+- +
T Consensus 496 ~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L 575 (1431)
T KOG1240|consen 496 IPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQAL 575 (1431)
T ss_pred CCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHH
Confidence 22222 13344444445555 788899999999999887665310 00 01111 011100 000 1
Q ss_pred HHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHH-HHHHHHHH
Q 001368 285 EGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHAL-ACVLYILR 363 (1091)
Q Consensus 285 e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r-~~v~~ILr 363 (1091)
-+.++ ....-++-.+ ..-||-.+.++..-+---.|. + +.-.-++.|+...|. +. |..-| .++.-|
T Consensus 576 ~~~V~-~~v~sLlsd~---~~~Vkr~Lle~i~~LC~FFGk---~--ksND~iLshLiTfLN-Dk--Dw~LR~aFfdsI-- 641 (1431)
T KOG1240|consen 576 HHTVE-QMVSSLLSDS---PPIVKRALLESIIPLCVFFGK---E--KSNDVILSHLITFLN-DK--DWRLRGAFFDSI-- 641 (1431)
T ss_pred HHHHH-HHHHHHHcCC---chHHHHHHHHHHHHHHHHhhh---c--ccccchHHHHHHHhc-Cc--cHHHHHHHHhhc--
Confidence 11111 1222233231 246666666664322222232 1 112446667666663 22 44433 555544
Q ss_pred HhhhccCCcHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHH
Q 001368 364 IGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALT 443 (1091)
Q Consensus 364 ~~i~~~LgE~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~c 443 (1091)
.+|.-.+|-.+=.|.+.=|+.+ .=+|+.+++++-||+.++.|++ +|----...-.+.+.+.-+|.|||.-||-++---
T Consensus 642 ~gvsi~VG~rs~seyllPLl~Q-~ltD~EE~Viv~aL~~ls~Lik-~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~i 719 (1431)
T KOG1240|consen 642 VGVSIFVGWRSVSEYLLPLLQQ-GLTDGEEAVIVSALGSLSILIK-LGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGI 719 (1431)
T ss_pred cceEEEEeeeeHHHHHHHHHHH-hccCcchhhHHHHHHHHHHHHH-hcccchHHHHHHHHhhhhheeCchHHHHHHHHHH
Confidence 2333344554334444444332 1278899999999999999997 4443334455678888999999999999877544
Q ss_pred H
Q 001368 444 L 444 (1091)
Q Consensus 444 L 444 (1091)
+
T Consensus 720 I 720 (1431)
T KOG1240|consen 720 I 720 (1431)
T ss_pred H
Confidence 3
No 36
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=5.9 Score=49.68 Aligned_cols=337 Identities=16% Similarity=0.118 Sum_probs=190.0
Q ss_pred ChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHh
Q 001368 119 EPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFA 198 (1091)
Q Consensus 119 sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~ 198 (1091)
+|.+ ||-+||+=.-+.-|+.|+. -....+=-.+++-.=..|-.+.-+++.|+.|-...-.-.+.-+..+.+.+ .
T Consensus 341 np~k--AAg~CL~l~A~~~~D~Iv~---~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~-l 414 (859)
T KOG1241|consen 341 NPAK--AAGVCLMLFAQCVGDDIVP---HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN-L 414 (859)
T ss_pred cHHH--HHHHHHHHHHHHhcccchh---hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH-H
Confidence 4555 7999999888888999865 33333333677656678889999999999987644445556666665444 3
Q ss_pred ccCcchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCC
Q 001368 199 IVDKSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGP 277 (1091)
Q Consensus 199 ~~Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~ 277 (1091)
++|++..||..++.|+..+...- |.- ....+ +.+..--.++|-+++-|.+..-|.+-.-..-..+++.+.. +..+
T Consensus 415 m~D~sl~VkdTaAwtlgrI~d~l-~e~~~n~~~--l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~-~qt~ 490 (859)
T KOG1241|consen 415 MSDPSLWVKDTAAWTLGRIADFL-PEAIINQEL--LQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSN-GQTD 490 (859)
T ss_pred hcCchhhhcchHHHHHHHHHhhc-hhhcccHhh--hhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCC-CCCC
Confidence 67999999999999999999875 332 33333 3333334455666677888887766543221112222111 1111
Q ss_pred CCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhcc------CCCcc
Q 001368 278 FPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRA------DIFVD 351 (1091)
Q Consensus 278 ~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~------~~~~~ 351 (1091)
. ..+-.++.+. -|...=-|.. +.-+..|+.-.+|...++..--...-. .+..+...+++-+.+ .+..|
T Consensus 491 ~-~t~~y~~ii~-~Ll~~tdr~d-gnqsNLR~AAYeALmElIk~st~~vy~---~v~~~~l~il~kl~q~i~~~~l~~~d 564 (859)
T KOG1241|consen 491 P-ATPFYEAIIG-SLLKVTDRAD-GNQSNLRSAAYEALMELIKNSTDDVYP---MVQKLTLVILEKLDQTISSQILSLAD 564 (859)
T ss_pred c-cchhHHHHHH-HHHhhccccc-cchhhHHHHHHHHHHHHHHcCcHHHHH---HHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 1 1123455443 3332222322 145778999888888888764321111 122233233332221 01111
Q ss_pred H--------HHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Q 001368 352 S--------HALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDS 423 (1091)
Q Consensus 352 ~--------~~r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d 423 (1091)
. +-+.|+.-|+|.+=.+..--. -.++..+++.+++ .-|.-+-.-|+-+++.|+..||.-+......+..
T Consensus 565 r~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~--d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~p 641 (859)
T KOG1241|consen 565 RAQLNELQSLLCNTLQSIIRKVGSDIREVS--DQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKP 641 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccchhHH--HHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 1 223555555554322111111 1333444444444 1222234479999999999999999988888888
Q ss_pred HHHHHhc-CCchHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhhcccc
Q 001368 424 TVVAAVS-HSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEK 477 (1091)
Q Consensus 424 ~l~~ll~-hps~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~~~~~~l~~~~ 477 (1091)
-|..-|. ...+-|=..|.--.--++.++-.-+.|.-+ +.|+.+...++.+.
T Consensus 642 yL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d---~~mt~Lvq~Lss~~ 693 (859)
T KOG1241|consen 642 YLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCD---ELMTVLVQCLSSPN 693 (859)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHccCcc
Confidence 8888774 445556556655555666555554444444 33444444343333
No 37
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=11 Score=45.83 Aligned_cols=366 Identities=15% Similarity=0.059 Sum_probs=202.8
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCchhhH--HHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHH
Q 001368 57 SILLWQRKCEDALYSLLILGARRPVRH--LASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELY 134 (1091)
Q Consensus 57 di~~~Q~~l~~~L~~~l~~~~g~P~R~--l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~ 134 (1091)
+=..+-+++.++|-+=...+|.+|-|+ |+|-+-+.+--.-|... |- -+-+--++.-=-|.+-..+.=|+.-|=.+-
T Consensus 35 ~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~-~~iv~Pv~~cf~D~d~~vRyyACEsLYNia 112 (675)
T KOG0212|consen 35 NDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YL-EKIVPPVLNCFSDQDSQVRYYACESLYNIA 112 (675)
T ss_pred CcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HH-HHhhHHHHHhccCccceeeeHhHHHHHHHH
Confidence 334455666677766666777777766 34444333322222211 21 111111111000222222334666666666
Q ss_pred HHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 001368 135 RQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCL 214 (1091)
Q Consensus 135 ~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL 214 (1091)
+..-..+...|+++.-.+.|+....+..+|..+ .++...++.+-..-++..+-+.+=...|--+.+..+.+|..-.+=+
T Consensus 113 Kv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl 191 (675)
T KOG0212|consen 113 KVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWL 191 (675)
T ss_pred HHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 767677889999999999999998666555322 2333333322211222333333333455557788999998887544
Q ss_pred HHHHhhcCCCc-ccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhh
Q 001368 215 KAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLA 293 (1091)
Q Consensus 215 ~~l~~~~~~~~-~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls 293 (1091)
...... |.+ --+=+..+..-.|+.+.+++.+||.-.-.+++++|..-.+.+ .+- ..+|.. ..+.
T Consensus 192 -~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P-----~s~-------d~~~~i-~vlv 256 (675)
T KOG0212|consen 192 -YVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP-----SSM-------DYDDMI-NVLV 256 (675)
T ss_pred -HHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc-----ccc-------Ccccch-hhcc
Confidence 444443 444 122234567888999999999999999999999997655422 110 112222 1333
Q ss_pred hhhcccCCCCcchhHHHHHHHHHHHHHHhcc-ccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCc
Q 001368 294 LPFTRANGAKSKNMRVNLTLSWVYFLQAIRL-KYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTE 372 (1091)
Q Consensus 294 ~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~-~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE 372 (1091)
.+- + +...+++- .+.-|+.-|-.+++ ..+- ..+.++..++..++..... +. +-+.++.+..+.++.+|
T Consensus 257 ~~l---~-ss~~~iq~-~al~Wi~efV~i~g~~~l~---~~s~il~~iLpc~s~~e~~--~i-~~~a~~~n~~l~~l~s~ 325 (675)
T KOG0212|consen 257 PHL---Q-SSEPEIQL-KALTWIQEFVKIPGRDLLL---YLSGILTAILPCLSDTEEM--SI-KEYAQMVNGLLLKLVSS 325 (675)
T ss_pred ccc---c-CCcHHHHH-HHHHHHHHHhcCCCcchhh---hhhhhhhhcccCCCCCccc--cH-HHHHHHHHHHHHHHHhh
Confidence 221 1 01122221 22456554444443 2221 1122232333333322221 22 22222223333333333
Q ss_pred HHH------HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 001368 373 PTQ------RSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRA 446 (1091)
Q Consensus 373 ~~Q------~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~ 446 (1091)
..- ..++..+.+++ .+-+.++-+++|.-+..|...-+.---...+.+-.+|+.-|+.+|.-|=.-+-..|..
T Consensus 326 ~~~~~~id~~~ii~vl~~~l--~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 326 ERLKEEIDYGSIIEVLTKYL--SDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred hhhccccchHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 322 34555555544 3445678899999999999977766666788899999999999999999999999999
Q ss_pred HHHhCCc
Q 001368 447 LAEVDPT 453 (1091)
Q Consensus 447 ~~~a~P~ 453 (1091)
+|..--+
T Consensus 404 i~~s~~~ 410 (675)
T KOG0212|consen 404 ICSSSNS 410 (675)
T ss_pred HhcCccc
Confidence 9966444
No 38
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.32 E-value=0.26 Score=46.93 Aligned_cols=85 Identities=22% Similarity=0.170 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcch
Q 001368 125 GAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSF 204 (1091)
Q Consensus 125 aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~ 204 (1091)
+++-+|.++-..+|..+...+++++..+++.+...++.+|+.+..+|-.+++..++.. -....+||....|. ..|...
T Consensus 5 ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl-~~D~d~ 82 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKL-SADPDE 82 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HcCCch
Confidence 8999999999999999999999999999999999999999999999999999888665 33578888865554 789999
Q ss_pred HHHHHHH
Q 001368 205 VVRIAGA 211 (1091)
Q Consensus 205 ~Vr~aAa 211 (1091)
.||-+|.
T Consensus 83 ~Vr~~a~ 89 (97)
T PF12755_consen 83 NVRSAAE 89 (97)
T ss_pred hHHHHHH
Confidence 9998883
No 39
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.14 E-value=0.29 Score=51.48 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=74.1
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHHHHHH
Q 001368 160 EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCV 238 (1091)
Q Consensus 160 ~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~tl~~ 238 (1091)
|+.+|.-++.+++.++..-.+-. +.....+++ ++.|++..||..|..|+..|..++ ++ +.+. +..-.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-e~~~~~l~~-----~L~D~~~~VR~~al~~Ls~Li~~d--~ik~k~~---l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-EPYLPNLYK-----CLRDEDPLVRKTALLVLSHLILED--MIKVKGQ---LFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-HhHHHHHHH-----HHCCCCHHHHHHHHHHHHHHHHcC--ceeehhh---hhHHHH
Confidence 57789999999999888777555 556677777 489999999999999999999986 44 3322 345556
Q ss_pred HhccCCChhHHHHHHHHHHHHHHh
Q 001368 239 KAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 239 K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
+.+.|+|+++|..+..++.++.-.
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHh
Confidence 788999999999999999998833
No 40
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.85 E-value=0.31 Score=44.31 Aligned_cols=86 Identities=31% Similarity=0.396 Sum_probs=67.9
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHH
Q 001368 67 DALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLL 146 (1091)
Q Consensus 67 ~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~ 146 (1091)
+.|.+.+...+-+-+|..+.+||+.+ |+. +.+..+...++ +++|..+.+|+..||.+ | -+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~---~~~----~~~~~L~~~l~---d~~~~vr~~a~~aL~~i----~------~~ 61 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL---GDP----EAIPALIELLK---DEDPMVRRAAARALGRI----G------DP 61 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC---THH----HHHHHHHHHHT---SSSHHHHHHHHHHHHCC----H------HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc---CCH----hHHHHHHHHHc---CCCHHHHHHHHHHHHHh----C------CH
Confidence 56778887889999999999999944 343 67888888885 66788777899999965 2 47
Q ss_pred HHHHHHHHHhccC-cHHHHHHHHHHHH
Q 001368 147 ETTIIAAKLMKFN-EEFVRQEALLLLQ 172 (1091)
Q Consensus 147 e~~~~llK~lK~~-~a~~R~~~l~~L~ 172 (1091)
+.+..+.+.+++. ...+|.+++.+|+
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888999999874 5667999998875
No 41
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.84 E-value=0.13 Score=48.89 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=78.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHH-HHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcc
Q 001368 148 TTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYS-EAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLG 226 (1091)
Q Consensus 148 ~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~-di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~ 226 (1091)
.+..+.+.++..+..+|..++.+|.++..+.-... ..+.+ ++++. .-..+.|++..|+..|+.||..+.... +. .
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~-l~~~l~~~~~~v~~~a~~~L~~l~~~~-~~-~ 83 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPA-LVQLLKSEDEEVVKAALWALRNLAAGP-ED-N 83 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHH-HHHHHhCCCHHHHHHHHHHHHHHccCc-HH-H
Confidence 56667888888778899999999999887532111 22222 55554 444588899999999999999998764 21 1
Q ss_pred cch-h-hhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 227 VGE-L-DNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 227 ~~d-l-E~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
... . ..+.....+.+++.+..+|..+..+|+.+.
T Consensus 84 ~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 111 1 136778888999999999999999998764
No 42
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.67 E-value=20 Score=42.88 Aligned_cols=223 Identities=17% Similarity=0.160 Sum_probs=127.3
Q ss_pred HHHHHHHHhhcCCCcccchhhh-HHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHH
Q 001368 211 ARCLKAFAHIGGPCLGVGELDN-SATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQ 289 (1091)
Q Consensus 211 a~cL~~l~~~~~~~~~~~dlE~-l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~ 289 (1091)
..++..+-+.. .+- +.+. +..++--+....+..+|.+++++++.++=+ +..+ ..+++.+.
T Consensus 172 ~~il~~l~~~~-~~~---~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK-~~~~--------------~~l~~~l~ 232 (415)
T PF12460_consen 172 SAILCSLRKDV-SLP---DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNK-WPDD--------------DDLDEFLD 232 (415)
T ss_pred HHHHHcCCccc-Ccc---CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CCCh--------------hhHHHHHH
Confidence 44554554443 222 3333 444444445666699999999999988733 2111 13455554
Q ss_pred HHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhcc
Q 001368 290 RHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQ 369 (1091)
Q Consensus 290 ~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~ 369 (1091)
..+... .+....+.|....+.|+-....+=-.. ++....|+..++++++.+ .+...+=+.+..++.+ ....
T Consensus 233 ~~~~~~----~~~~~~~~~~~~~~~~~Wi~KaLv~R~---~~~~~~~~~~L~~lL~~~-~~g~~aA~~f~il~~d-~~~~ 303 (415)
T PF12460_consen 233 SLLQSI----SSSEDSELRPQALEILIWITKALVMRG---HPLATELLDKLLELLSSP-ELGQQAAKAFGILLSD-SDDV 303 (415)
T ss_pred HHHhhh----cccCCcchhHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHhCCh-hhHHHHHHHHhhHhcC-cHHh
Confidence 333322 112445666666677766666532211 123467888888888752 1222233566666655 1112
Q ss_pred CCcH---------HHH---HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhh----HHHHHHHHHHHhcCCc
Q 001368 370 MTEP---------TQR---SFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEF----KEVLDSTVVAAVSHSS 433 (1091)
Q Consensus 370 LgE~---------~Q~---~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~----~~~l~d~l~~ll~hps 433 (1091)
+... -|| +++..+.+..+..+.. .-..-|.+++++++ .+|.++ ...+...|++.|..|+
T Consensus 304 l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~--~k~~yL~ALs~ll~---~vP~~vl~~~l~~LlPLLlqsL~~~~ 378 (415)
T PF12460_consen 304 LNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE--IKSNYLTALSHLLK---NVPKSVLLPELPTLLPLLLQSLSLPD 378 (415)
T ss_pred cCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh--hHHHHHHHHHHHHh---hCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2211 121 3333333333222221 22344667788877 445433 4457888899999999
Q ss_pred hHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHH
Q 001368 434 QLVRIEAALTLRALAEVDPTCVSGLITYGVTTL 466 (1091)
Q Consensus 434 ~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L 466 (1091)
..+|.++-.+|..+..-.|..+.+=++..+.+|
T Consensus 379 ~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 379 ADVLLSSLETLKMILEEAPELISEHLSSLIPRL 411 (415)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 999999999999999999888777776666655
No 43
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.59 E-value=0.048 Score=45.75 Aligned_cols=54 Identities=35% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHH
Q 001368 205 VVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSL 259 (1091)
Q Consensus 205 ~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~l 259 (1091)
.||.+|+.+|..+.... +..-..-+..+...+.+.++++++.||.+++.+||++
T Consensus 2 ~vR~~A~~aLg~l~~~~-~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGC-PELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTT-HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhccc-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 69999999998766543 2222224557888999999999999999999999964
No 44
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=2.9 Score=50.79 Aligned_cols=279 Identities=14% Similarity=0.117 Sum_probs=146.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCccc
Q 001368 149 TIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA-AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGV 227 (1091)
Q Consensus 149 ~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~-~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~ 227 (1091)
+...+..+++...+.+..+...+.|.+..--..- +.-+..-+..........|....+|+.|+.+|..++..+ +--+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTK 146 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhcc
Confidence 4455666667777778899999999988655422 333444444434444335777889999999999998864 11000
Q ss_pred chh-hhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChH-HHHHHHhhhhhcccCCCCcc
Q 001368 228 GEL-DNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLE-GGLQRHLALPFTRANGAKSK 305 (1091)
Q Consensus 228 ~dl-E~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e-~~l~~~Ls~~f~r~~~~~~r 305 (1091)
-=. ...+-+..+.+.+++..||.-+.-+||.+....-.-+ ..-++ .+|. -|-..+.+.. .=
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R-------------d~vl~~g~l~-pLl~~l~~~~---~~ 209 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR-------------DYVLSCGALD-PLLRLLNKSD---KL 209 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH-------------HHHHhhcchH-HHHHHhcccc---ch
Confidence 001 1345567899999999999999999999874322100 00000 1111 1111111111 00
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCchh---hHHHHHHHHHhccCCCccHHH----HHHHHHHHHHhhhccCCcHHHH--
Q 001368 306 NMRVNLTLSWVYFLQAIRLKYFHPDSEL---QDYALQVMDMLRADIFVDSHA----LACVLYILRIGVTDQMTEPTQR-- 376 (1091)
Q Consensus 306 ~~R~Gv~~ayv~fl~~lg~~~le~~~~~---~~y~~~i~~ll~~~~~~~~~~----r~~v~~ILr~~i~~~LgE~~Q~-- 376 (1091)
...--++-+...|.+.-.+ ...+ ...+..+..++ ++. |+.. +-.++|+- .---|..|.
T Consensus 210 ~~lRn~tW~LsNlcrgk~P-----~P~~~~v~~iLp~L~~ll-~~~--D~~Vl~Da~WAlsyLs-----dg~ne~iq~vi 276 (514)
T KOG0166|consen 210 SMLRNATWTLSNLCRGKNP-----SPPFDVVAPILPALLRLL-HST--DEEVLTDACWALSYLT-----DGSNEKIQMVI 276 (514)
T ss_pred HHHHHHHHHHHHHHcCCCC-----CCcHHHHHHHHHHHHHHH-hcC--CHHHHHHHHHHHHHHh-----cCChHHHHHHH
Confidence 0111112222222221111 0111 12221122222 111 2222 22344441 111233342
Q ss_pred --HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhh-HHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhCC
Q 001368 377 --SFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEF-KEVLDSTVVAAVS-HSSQLVRIEAALTLRALAEVDP 452 (1091)
Q Consensus 377 --~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~-~~~l~d~l~~ll~-hps~svRi~AA~cLr~~~~a~P 452 (1091)
..+..+++.+...++ .+.+-||+++|+.+..-+.-...+ -.+....+..++. ||...+|=+|+|++-.++.-.+
T Consensus 277 ~~gvv~~LV~lL~~~~~--~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~ 354 (514)
T KOG0166|consen 277 DAGVVPRLVDLLGHSSP--KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ 354 (514)
T ss_pred HccchHHHHHHHcCCCc--ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH
Confidence 223334443333333 355678877777443222211111 2246667778888 9999999999999999999999
Q ss_pred cchhhHHH
Q 001368 453 TCVSGLIT 460 (1091)
Q Consensus 453 ~~~~~ll~ 460 (1091)
.++..+++
T Consensus 355 ~qiqaVid 362 (514)
T KOG0166|consen 355 EQIQAVID 362 (514)
T ss_pred HHHHHHHH
Confidence 88888886
No 45
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.42 E-value=6.1 Score=45.05 Aligned_cols=110 Identities=16% Similarity=0.089 Sum_probs=85.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcC-CCccc-
Q 001368 150 IIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGG-PCLGV- 227 (1091)
Q Consensus 150 ~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~-~~~~~- 227 (1091)
+.+...+++.+..+|-.++++|+-.+- .|...+.+.++. +..++......|+..|.+++..+....| .++..
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~L-----ld~~~a~~~l~l-~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCL-----LDKELAKEHLPL-FLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHH-----hChHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 556688999999999999999987554 456677887775 4444443489999999999988877533 33422
Q ss_pred ------chhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccC
Q 001368 228 ------GELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMN 265 (1091)
Q Consensus 228 ------~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~ 265 (1091)
.+-+.+..+..|++++.++++|..+++.++.++.....
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 23457999999999999999999999999999966554
No 46
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.38 E-value=3.1 Score=49.80 Aligned_cols=210 Identities=14% Similarity=0.056 Sum_probs=133.0
Q ss_pred HhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcch-hHHhHHHHHHhhhcCCCCChHhHHHH
Q 001368 48 SAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNIS-VYSRVSSLQGFLSDGKKSEPQKVAGA 126 (1091)
Q Consensus 48 ~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~-lfdtvn~l~~iL~~~K~~sp~~~~aA 126 (1091)
..+...+|+..-.....+.+.+.++......+++|...++|++.+..|-.... +-+.++...+-+. +...++.+. .+
T Consensus 173 ~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~-~~~~~~~~~-~~ 250 (415)
T PF12460_consen 173 AILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSIS-SSEDSELRP-QA 250 (415)
T ss_pred HHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhc-ccCCcchhH-HH
Confidence 44555555554334444778888888888889999999999999999933322 2222223332221 112222333 57
Q ss_pred HHHHHHHHHHHhhHHhhcHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCC---chhHHHHHHHH-HHHH----
Q 001368 127 AQCLGELYRQFGRRITSGLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSA---AASAYSEAFRL-IMRF---- 197 (1091)
Q Consensus 127 ~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~-~~a~~R~~~l~~L~kil~g~g~~~---~~~~~~di~K~-~~r~---- 197 (1091)
+..++-+-+.+ +++..+.....+-+++.- .++.+...+=++++-++....... .....|=.||| .+..
T Consensus 251 ~~~~~Wi~KaL---v~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~ 327 (415)
T PF12460_consen 251 LEILIWITKAL---VMRGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPK 327 (415)
T ss_pred HHHHHHHHHHH---HHcCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHH
Confidence 77777666653 455556555555554443 336666777788887777633222 23567888887 1111
Q ss_pred ---hccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 001368 198 ---AIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 198 ---~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
...+.+-.++..-...|..+.++.+.-+..++++++..+.+.+++-+|.++|.++=++|..++-.
T Consensus 328 L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 328 LLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 12222222555556666677777633358899999999999999999999999999999998833
No 47
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.16 E-value=0.89 Score=41.22 Aligned_cols=85 Identities=29% Similarity=0.312 Sum_probs=60.2
Q ss_pred HHHHHHh-ccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccc
Q 001368 150 IIAAKLM-KFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVG 228 (1091)
Q Consensus 150 ~~llK~l-K~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~ 228 (1091)
..+++.+ +.....+|..+..+|++ .| ++.+...+.+ .+.|.+..||.+|+.-|..+-.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~----~~---~~~~~~~L~~-----~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGE----LG---DPEAIPALIE-----LLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHC----CT---HHHHHHHHHH-----HHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH----cC---CHhHHHHHHH-----HHcCCCHHHHHHHHHHHHHhCC---------
Confidence 4577888 55678999999999883 33 3333333333 4689999999999998876532
Q ss_pred hhhhHHHHHHHhccC-CChhHHHHHHHHHH
Q 001368 229 ELDNSATHCVKAIED-PIASVRDAFAEALG 257 (1091)
Q Consensus 229 dlE~l~tl~~K~le~-s~~~vR~a~A~~Lg 257 (1091)
+.......+.+++ ++..+|.++++.||
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3456666776666 45667999999887
No 48
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=93.05 E-value=21 Score=41.35 Aligned_cols=71 Identities=17% Similarity=-0.015 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHh
Q 001368 144 GLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAH 219 (1091)
Q Consensus 144 ~~~e~~~~llK~lK~-~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~ 219 (1091)
..+.++..+..++++ .|.+.+...+.+|.+-+...+... -+++.+ +++.++.||..+||.+=..|+...+.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~----~~~~~~-~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL----PKKVVD-AFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC----CHHHHH-HHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 567777778887766 566667778888888777774333 345555 34447888888888888777755554
No 49
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=92.29 E-value=40 Score=42.60 Aligned_cols=327 Identities=17% Similarity=0.115 Sum_probs=192.3
Q ss_pred chhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhc---CCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHH
Q 001368 79 RPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSD---GKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKL 155 (1091)
Q Consensus 79 ~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~---~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~ 155 (1091)
+=+||..||.++.+-+.= .++.++-+|++ +|| |-..+|-.+-|..++-.-.|..+.+-....+.++-+.
T Consensus 490 eYVRnttarafavvasal-------gip~llpfLkavc~Skk-SwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~g 561 (1172)
T KOG0213|consen 490 EYVRNTTARAFAVVASAL-------GIPALLPFLKAVCGSKK-SWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHG 561 (1172)
T ss_pred HHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHhcccc-chhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 345999999999887641 34566666653 444 5555567899999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCC---chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc-ccc--h
Q 001368 156 MKFNEEFVRQEALLLLQNALEGSGGSA---AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL-GVG--E 229 (1091)
Q Consensus 156 lK~~~a~~R~~~l~~L~kil~g~g~~~---~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~--d 229 (1091)
+|.-+-.+|.-.-.+++.+-+.++.-. =+++.+-+||- .|. .++ +-|.++.+.. .|+ ... +
T Consensus 562 l~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg-ir~---hrg--------k~laafLkAi-gyliplmd~e 628 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG-IRQ---HRG--------KELAAFLKAI-GYLIPLMDAE 628 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-HHH---ccC--------hHHHHHHHHH-hhccccccHH
Confidence 998888899888888888777666433 25678888885 332 122 2222333322 122 222 2
Q ss_pred hhh-----HHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCc
Q 001368 230 LDN-----SATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKS 304 (1091)
Q Consensus 230 lE~-----l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~ 304 (1091)
.++ +.-+..|-+.++|.+-..-+-+-+-...+. .+..| .=++ +|.+-.|+-....|-.....
T Consensus 629 ya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t-----~Gv~~-------~y~r-~dilp~ff~~fw~rrmA~dr 695 (1172)
T KOG0213|consen 629 YASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCAT-----DGVEP-------AYIR-FDILPEFFFSFWGRRMALDR 695 (1172)
T ss_pred HHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcc-----cCCCH-------HHHh-hhhhHHHHhhhhhhhhhccc
Confidence 222 233666778888887777665555443321 11111 0111 23222244444333321122
Q ss_pred chhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHH---HHHHHHHHHhhhccCCcHHHHHHHHH
Q 001368 305 KNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHAL---ACVLYILRIGVTDQMTEPTQRSFLVF 381 (1091)
Q Consensus 305 r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r---~~v~~ILr~~i~~~LgE~~Q~~~~~~ 381 (1091)
|.-| -+.+.-+.+-+.+|.. ..+...|.++=+.+. +++. ..|+-|+-..=..=++|.-...++..
T Consensus 696 r~yk-qlv~ttv~ia~KvG~~--------~~v~R~v~~lkde~e---~yrkm~~etv~ri~~~lg~~diderleE~lidg 763 (1172)
T KOG0213|consen 696 RNYK-QLVDTTVEIAAKVGSD--------PIVSRVVLDLKDEPE---QYRKMVAETVSRIVGRLGAADIDERLEERLIDG 763 (1172)
T ss_pred cchh-hHHHHHHHHHHHhCch--------HHHHHHhhhhccccH---HHHHHHHHHHHHHHhccccccccHHHHHHHHHH
Confidence 3333 2445556677778863 122322333322221 2322 22333321111122356655666666
Q ss_pred HHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcc
Q 001368 382 LGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTC 454 (1091)
Q Consensus 382 l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~ 454 (1091)
|+......+.+.. +-|.-.+-...+||.-..+....+...++..|-|++.-||.+||-..-.++..+-.|
T Consensus 764 il~Afqeqtt~d~---vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc 833 (1172)
T KOG0213|consen 764 ILYAFQEQTTEDS---VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTC 833 (1172)
T ss_pred HHHHHHhcccchh---hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhc
Confidence 6665533333222 344555666788888777777788999999999999999999999998888655554
No 50
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=92.28 E-value=26 Score=45.03 Aligned_cols=338 Identities=16% Similarity=0.066 Sum_probs=190.7
Q ss_pred chhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCC-CCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhc
Q 001368 79 RPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGK-KSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMK 157 (1091)
Q Consensus 79 ~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K-~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK 157 (1091)
-++|-++..++..+..-.|.-. |..+.+.+.+-... |.+-..+-......-++|+.+|.+.+ -++.+....-.+|
T Consensus 290 dsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~--~~~~~~~~~~l~~ 365 (759)
T KOG0211|consen 290 DSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSAT--RTQLVPPVSNLLK 365 (759)
T ss_pred hhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccC--cccchhhHHHHhc
Confidence 5567777777777777766663 44445555443222 22222232344444578888888443 3344556666777
Q ss_pred cCcHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHH
Q 001368 158 FNEEFVRQEALLLLQNALEGSGGSA-AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATH 236 (1091)
Q Consensus 158 ~~~a~~R~~~l~~L~kil~g~g~~~-~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl 236 (1091)
..+.-.|+++-.-..+...-..... .+..-.-|+- .++-...|.+..||.+.+--...+.... + -.+-++.+..+
T Consensus 366 ~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp-~~~~lv~d~~~~vr~a~a~~~~~~~p~~-~--k~~ti~~llp~ 441 (759)
T KOG0211|consen 366 DEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILP-EVQVLVLDNALHVRSALASVITGLSPIL-P--KERTISELLPL 441 (759)
T ss_pred chhhhhhHHhhcchHHHhhhcCcccccccchhhhhH-HHHHHHhcccchHHHHHhccccccCccC-C--cCcCccccChh
Confidence 7778888887776666555333111 1112223344 5777788999999988875544443332 1 22333446667
Q ss_pred HHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHH
Q 001368 237 CVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWV 316 (1091)
Q Consensus 237 ~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv 316 (1091)
..+-+.+.+..||......+..+.......+. ....+..+..+. .+... ...++|..+-+..-
T Consensus 442 ~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~-------------~~~s~slLp~i~-el~~d---~~wRvr~ail~~ip 504 (759)
T KOG0211|consen 442 LIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGI-------------STVSNSLLPAIV-ELAED---LLWRVRLAILEYIP 504 (759)
T ss_pred hhhhcchhhHHHHHhhHHHHHHHHhccCcccc-------------hhhhhhhhhhhh-hhccc---hhHHHHHHHHHHHH
Confidence 77778888899999988877555422222110 011111110110 01111 25778888887777
Q ss_pred HHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCC--cHHHHHHHHHHHhhcccCCCChh
Q 001368 317 YFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMT--EPTQRSFLVFLGKQLQAVDASPF 394 (1091)
Q Consensus 317 ~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~Lg--E~~Q~~~~~~l~~~~~~~~~s~~ 394 (1091)
.....+|..|.. +.|...++.-+ +.++...+.+|...+ ...+ +..| ...|.++-+.+.- -.+. +
T Consensus 505 ~la~q~~~~~~~-----~~~~~l~~~~l--~d~v~~Ir~~aa~~l-~~l~-~~~G~~w~~~~~i~k~L~~-~~q~----~ 570 (759)
T KOG0211|consen 505 QLALQLGVEFFD-----EKLAELLRTWL--PDHVYSIREAAARNL-PALV-ETFGSEWARLEEIPKLLAM-DLQD----N 570 (759)
T ss_pred HHHHhhhhHHhh-----HHHHHHHHhhh--hhhHHHHHHHHHHHh-HHHH-HHhCcchhHHHhhHHHHHH-hcCc----c
Confidence 777778865543 34554444443 222333333444444 3333 3445 2223333333322 1111 2
Q ss_pred HHH--HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcchhhHHH
Q 001368 395 MKI--AALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLIT 460 (1091)
Q Consensus 395 ~lv--~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll~ 460 (1091)
++. ..+..+..+...+|.-. +.+.+.+.+..+..+|...||+.+|.-|..+. |.-..+..+
T Consensus 571 y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~---~~L~~~~~~ 633 (759)
T KOG0211|consen 571 YLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLPKIL---KLLDESVRD 633 (759)
T ss_pred cchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHHHHH---hhcchHHHH
Confidence 333 56667777777777643 45678999999999999999999999999998 554444444
No 51
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.88 E-value=7.5 Score=50.13 Aligned_cols=193 Identities=20% Similarity=0.193 Sum_probs=132.8
Q ss_pred hccCChhhHHHHH-HHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhc-C-CcchhHHhHHHHHHhhh-cCCCCChHhHHH
Q 001368 50 IDEEPKESILLWQ-RKCEDALYSLLILGARRPVRHLASVAMGRIISK-G-DNISVYSRVSSLQGFLS-DGKKSEPQKVAG 125 (1091)
Q Consensus 50 l~~~~k~di~~~Q-~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~-G-D~~~lfdtvn~l~~iL~-~~K~~sp~~~~a 125 (1091)
.+-.++.||-.++ +.+++++ .++--+.|+=...-|..+.+- + +...-|. +.+--.++ ..||.......-
T Consensus 242 ~d~l~~~di~~ki~~~l~t~~-----~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~--~ll~~~~ki~~kDaN~~v~~~ 314 (815)
T KOG1820|consen 242 FDLLPRVDILSKITKNLETEM-----LSKKWKDRKEALEELVAILEEAKKEIVKGYT--GLLGILLKIRLKDANINVVML 314 (815)
T ss_pred cccCchhhhhhhcChHHHHhh-----hccchHHHHHHHHHHHHHHhccccccccCcc--hHHHHHHHHhccCcchhHHHH
Confidence 3445666666665 4455555 456677777777776666652 2 2322232 11112222 234544444556
Q ss_pred HHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchH
Q 001368 126 AAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFV 205 (1091)
Q Consensus 126 A~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~ 205 (1091)
|++||+.+..++|...-.........++.-+|-.-+.+|-++..++.+++.+.+ . +.+.+.|.- ++.++...
T Consensus 315 aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--l-~~~~~~I~e-----~lk~knp~ 386 (815)
T KOG1820|consen 315 AAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--L-SKMSEAILE-----ALKGKNPQ 386 (815)
T ss_pred HHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc--H-HHHHHHHHH-----HhcCCChh
Confidence 999999999999999888888899999999999989999999988888887222 2 333444443 47889988
Q ss_pred HHHHHHHHHHHHHhh---cCC-CcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 206 VRIAGARCLKAFAHI---GGP-CLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 206 Vr~aAa~cL~~l~~~---~~~-~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
++ .+|+..+.+. .++ -.-....+.++..|.|..-|.+.+||.|+.+++|.+.
T Consensus 387 ~k---~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 387 IK---GECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hH---HHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 88 5666555443 222 1244567889999999999999999999999999887
No 52
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.87 E-value=3.5 Score=50.85 Aligned_cols=236 Identities=15% Similarity=0.108 Sum_probs=149.2
Q ss_pred cccchhHHHHHHHHHhhhccCCCCchHHHHHHHHHHHhhccCChhhHHHHH---HHHHHHHHHHhhcCCCchhhHHHHHH
Q 001368 12 LSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQ---RKCEDALYSLLILGARRPVRHLASVA 88 (1091)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q---~~l~~~L~~~l~~~~g~P~R~l~a~c 88 (1091)
||||+-||.|.| +..|.-..|..|-+.+...+|..=.+.= ..+|++-=.-+...- -+.=..+.+|
T Consensus 458 LsRys~wv~~~~-----------~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l-~~IL~~l~~a 525 (885)
T KOG2023|consen 458 LSRYSKWVVQDS-----------RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYL-EYILDQLVFA 525 (885)
T ss_pred HhhhhhhHhcCC-----------hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHH-HHHHHHHHHH
Confidence 789999998765 5556666777777777655554311110 111111000000000 1123345667
Q ss_pred HHHHhhcCCcchhHHhHHHHHHhhhc--CC------------------CCChHhHHHHHHHHHHHHHHHhhHHhhcHHHH
Q 001368 89 MGRIISKGDNISVYSRVSSLQGFLSD--GK------------------KSEPQKVAGAAQCLGELYRQFGRRITSGLLET 148 (1091)
Q Consensus 89 la~l~~~GD~~~lfdtvn~l~~iL~~--~K------------------~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~ 148 (1091)
|.. |.+-+=..|||.|.++.|.... +| +++-+.+.--+.|+..+-.++|....-..+++
T Consensus 526 f~k-YQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~V 604 (885)
T KOG2023|consen 526 FGK-YQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPV 604 (885)
T ss_pred HHH-HhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHH
Confidence 765 7777899999999999998852 11 11112335688999999999999888877777
Q ss_pred HHHHHHHhcc--------C--------cHHHHHHHHHHHHHHHhcCCCCCchhH-HHHHHHHHHHHhccCcchHHHHHHH
Q 001368 149 TIIAAKLMKF--------N--------EEFVRQEALLLLQNALEGSGGSAAASA-YSEAFRLIMRFAIVDKSFVVRIAGA 211 (1091)
Q Consensus 149 ~~~llK~lK~--------~--------~a~~R~~~l~~L~kil~g~g~~~~~~~-~~di~K~~~r~~~~Dks~~Vr~aAa 211 (1091)
.+-.++.+.+ + +--....++..+.-+.+|+|+.+.+-+ ..++-+ .+=.|+.|....||-+|.
T Consensus 605 y~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~-lll~C~~D~~peVRQS~F 683 (885)
T KOG2023|consen 605 YQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLD-LLLQCLQDEVPEVRQSAF 683 (885)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHH-HHHHHhccCChHHHHHHH
Confidence 7666666552 1 123456788999999999998884332 334555 466689999999999998
Q ss_pred HHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 001368 212 RCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 212 ~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
.-|.-+.+...... ...++.+.-+.---++..+-++-.-+--++|++..+
T Consensus 684 ALLGDltk~c~~~v-~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k 733 (885)
T KOG2023|consen 684 ALLGDLTKACFEHV-IPNLADFLPILGANLNPENISVCNNAIWAIGEIALK 733 (885)
T ss_pred HHHHHHHHHHHHhc-cchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHH
Confidence 88888877641111 122333444444566667777777777788887643
No 53
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=91.77 E-value=27 Score=42.07 Aligned_cols=138 Identities=21% Similarity=0.231 Sum_probs=98.8
Q ss_pred HhHHHHHHHHHHHHHHHhhHHhhcH-----HH-----HHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCC----------
Q 001368 121 QKVAGAAQCLGELYRQFGRRITSGL-----LE-----TTIIAAKLMKFNEEFVRQEALLLLQNALEGSGG---------- 180 (1091)
Q Consensus 121 ~~~~aA~~cLG~l~~~~G~~l~s~~-----~e-----~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~---------- 180 (1091)
+.+.+|++|+-.+.++..|+..-.+ |+ +=+.++-.+|......|..+++-+..++.|...
T Consensus 11 kvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~ 90 (728)
T KOG4535|consen 11 KVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSD 90 (728)
T ss_pred HHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCC
Confidence 4457899999999998888764322 21 112344467777888999999999999998753
Q ss_pred CC-------chhHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHhhcCCCc--ccchhhhHHHHHHHhccCCChhHHH
Q 001368 181 SA-------AASAYSEAFRLIMRFAIV-DKSFVVRIAGARCLKAFAHIGGPCL--GVGELDNSATHCVKAIEDPIASVRD 250 (1091)
Q Consensus 181 ~~-------~~~~~~di~K~~~r~~~~-Dks~~Vr~aAa~cL~~l~~~~~~~~--~~~dlE~l~tl~~K~le~s~~~vR~ 250 (1091)
+. -.+..++.|+. .=.++. +-+.+|-.-..+||..|+..+ ||= ..+=+-.+..-+-|.+.++|..||-
T Consensus 91 ~~ftpf~v~~a~si~~~~r~-l~~~l~~e~~~~~~tq~~kcla~lv~~~-p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v 168 (728)
T KOG4535|consen 91 HAFTPFSVMIACSIRELHRC-LLLALVAESSSQTVTQIIKCLANLVSNA-PYDRLKLSLLTKVWNQIKPYIRHKDVNVRV 168 (728)
T ss_pred cCCCchHHHHHHHHHHHHHH-HHHHHHHhcCchhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence 11 13346777773 444443 466778888899999999986 763 3344446677788899999999999
Q ss_pred HHHHHHHHHH
Q 001368 251 AFAEALGSLL 260 (1091)
Q Consensus 251 a~A~~Lg~lL 260 (1091)
+.--.++.+.
T Consensus 169 s~l~~~~~~v 178 (728)
T KOG4535|consen 169 SSLTLLGAIV 178 (728)
T ss_pred HHHHHHHHHH
Confidence 8888888776
No 54
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.66 E-value=41 Score=41.37 Aligned_cols=347 Identities=14% Similarity=0.093 Sum_probs=176.7
Q ss_pred hHHhHHHHHHhhhc-CC---CC--ChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 001368 101 VYSRVSSLQGFLSD-GK---KS--EPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNA 174 (1091)
Q Consensus 101 lfdtvn~l~~iL~~-~K---~~--sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~ki 174 (1091)
+-|.+-.+.++|.. +. +| +|+. ||-+||--.-+.-|+.+++- ....+=.++++..-.-|-++.-+++.+
T Consensus 319 v~dvlP~lL~LL~~q~ed~~~DdWn~sm--aA~sCLqlfaq~~gd~i~~p---Vl~FvEqni~~~~w~nreaavmAfGSv 393 (858)
T COG5215 319 VADVLPELLSLLEKQGEDYYGDDWNPSM--AASSCLQLFAQLKGDKIMRP---VLGFVEQNIRSESWANREAAVMAFGSV 393 (858)
T ss_pred HHHHHHHHHHHHHhcCCCccccccchhh--hHHHHHHHHHHHhhhHhHHH---HHHHHHHhccCchhhhHHHHHHHhhhh
Confidence 34566677777752 22 11 3444 78899954445668888654 445555566664445677788899999
Q ss_pred HhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCccc-chhhhHHHHHHHhccCCChhHHHHHH
Q 001368 175 LEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGV-GELDNSATHCVKAIEDPIASVRDAFA 253 (1091)
Q Consensus 175 l~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~-~dlE~l~tl~~K~le~s~~~vR~a~A 253 (1091)
..|=-...-..+.-+..+- .-.-++|.+.-|.--++.|+.+++.+-+-.++. .-+--..+.| +-|--+.-|++++
T Consensus 394 m~gp~~~~lT~~V~qalp~-i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~---liGl~D~p~~~~n 469 (858)
T COG5215 394 MHGPCEDCLTKIVPQALPG-IENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSAS---LIGLMDCPFRSIN 469 (858)
T ss_pred hcCccHHHHHhhHHhhhHH-HHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHH---HhhhhccchHHhh
Confidence 8865432223344555553 444578999999999999999999874222221 1111122223 2333333455555
Q ss_pred HHHHHHHHhccCCCCcCCCCCCCCCCCCCCh-HHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCch
Q 001368 254 EALGSLLALGMNPQAQVQPKGKGPFPPAKKL-EGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSE 332 (1091)
Q Consensus 254 ~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~-e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~ 332 (1091)
-+..-.-...+.+++... ..+...++ ++.+ .-|..+=-++. .-...|+..+.+...++.--...-.+ .
T Consensus 470 csw~~~nlv~h~a~a~~~-----~~S~l~~fY~ai~-~~Lv~~t~~~~--Ne~n~R~s~fsaLgtli~~~~d~V~~---~ 538 (858)
T COG5215 470 CSWRKENLVDHIAKAVRE-----VESFLAKFYLAIL-NALVKGTELAL--NESNLRVSLFSALGTLILICPDAVSD---I 538 (858)
T ss_pred hHHHHHhHHHhhhhhhcc-----ccchhHHHHHHHH-HHHHHHHHhhc--cchhHHHHHHHHHHHHHhhcchhHHH---H
Confidence 555444333344332100 11111122 2222 12222222222 34567777777776666543221111 1
Q ss_pred hhHHHHHHHHHhccC----C----CccHH-H---HHHHHHHHHHhhhccCC--cHHHHHHHHHHHhhccc----------
Q 001368 333 LQDYALQVMDMLRAD----I----FVDSH-A---LACVLYILRIGVTDQMT--EPTQRSFLVFLGKQLQA---------- 388 (1091)
Q Consensus 333 ~~~y~~~i~~ll~~~----~----~~~~~-~---r~~v~~ILr~~i~~~Lg--E~~Q~~~~~~l~~~~~~---------- 388 (1091)
..+|.+.+++-+... . .-|.. . +.=.--+|..+|+..=. |..--+++.-+++.+++
T Consensus 539 ~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV 618 (858)
T COG5215 539 LAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDV 618 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHH
Confidence 123333333322210 0 00110 0 11111222333432222 22221111111111110
Q ss_pred -------------------C-----------CCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchH--H
Q 001368 389 -------------------V-----------DASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQL--V 436 (1091)
Q Consensus 389 -------------------~-----------~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~s--v 436 (1091)
+ ...-.++..|...++.|-..||+-+....+.+...|.+.|++|... +
T Consensus 619 ~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~l 698 (858)
T COG5215 619 YTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDL 698 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhcccc
Confidence 0 0112456789999999999999999999999999999999998753 3
Q ss_pred HHHHHHHHHHHHHhCCcchhhHHHHHHHHHH
Q 001368 437 RIEAALTLRALAEVDPTCVSGLITYGVTTLN 467 (1091)
Q Consensus 437 Ri~AA~cLr~~~~a~P~~~~~ll~~~~~~L~ 467 (1091)
.=+--.|+--++.+.-.-..+-|+..+-...
T Consensus 699 KPaiLSvFgDIAlaiga~F~~YL~~im~L~q 729 (858)
T COG5215 699 KPAILSVFGDIALAIGANFESYLDMIMMLFQ 729 (858)
T ss_pred chHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333345555555555555555555444443
No 55
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=91.53 E-value=2.8 Score=46.90 Aligned_cols=147 Identities=17% Similarity=0.196 Sum_probs=98.6
Q ss_pred HHhhcCCcccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHhccCCCCCchhHHHH
Q 001368 872 IHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGV 951 (1091)
Q Consensus 872 I~r~vGgmas~~~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~~~~~~i 951 (1091)
+-|..||+ .++-.+.+||+|.|+.=||.+|.-... +..+.. -....+
T Consensus 49 ~Ir~~Ggi----------~lI~~lL~~p~~~vr~~AL~aL~Nls~--~~en~~---------------------~Ik~~i 95 (254)
T PF04826_consen 49 IIRDLGGI----------SLIGSLLNDPNPSVREKALNALNNLSV--NDENQE---------------------QIKMYI 95 (254)
T ss_pred HHHHcCCH----------HHHHHHcCCCChHHHHHHHHHHHhcCC--ChhhHH---------------------HHHHHH
Confidence 45667774 457788899999999877777762210 000111 111223
Q ss_pred HHHHHHHHHhhCCCCCCchhhhHhhhccccCCCchhHHHHHhHHhhhcccCccchhhHHHHHHHhhcCCChHHHHHHHHH
Q 001368 952 GRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVST 1031 (1091)
Q Consensus 952 gr~l~alI~~LGPeLq~~s~~~~~~~~~~~~~~~~~eai~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aAv~c 1031 (1091)
.+++..+++ ...+.+.|..+++.|-+|.+-.-.|--+..+++.|...|.+.+...|.-+..+
T Consensus 96 ~~Vc~~~~s------------------~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~ 157 (254)
T PF04826_consen 96 PQVCEETVS------------------SPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKV 157 (254)
T ss_pred HHHHHHHhc------------------CCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHH
Confidence 333332222 12333456777777777766555555567789999999999999999999999
Q ss_pred HHHHHccCc--hhhhhhchHHHHHHhhccCCCHH-HHHHHH
Q 001368 1032 LRHLIEKDP--DSVIEERIEGNLFHMLDEETDSE-YVKSYT 1069 (1091)
Q Consensus 1032 LrqL~qr~a--~~v~~~~le~~Lf~~LD~e~d~~-l~~~~~ 1069 (1091)
|.+|.+.-+ .+++..+....+...+|++.+.+ +.+.++
T Consensus 158 L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~ 198 (254)
T PF04826_consen 158 LVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLT 198 (254)
T ss_pred HHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHH
Confidence 999998876 46666677788889999987766 555555
No 56
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=91.49 E-value=0.25 Score=41.40 Aligned_cols=55 Identities=25% Similarity=0.203 Sum_probs=48.5
Q ss_pred hHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 001368 120 PQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNA 174 (1091)
Q Consensus 120 p~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~ki 174 (1091)
|..+.+|+.+||.+-+..++.+....++.+..+.+.++..++.+|..+..+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3445589999999888889999999999999999999998889999999999864
No 57
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.98 E-value=13 Score=45.32 Aligned_cols=144 Identities=16% Similarity=0.149 Sum_probs=109.5
Q ss_pred chhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhhC
Q 001368 884 LVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLG 963 (1091)
Q Consensus 884 ~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~~~~~~igr~l~alI~~LG 963 (1091)
.+..++-=++.-.+|+.--|.|+|-++|.-++--+-..+-+|-+.....+.++--..+.+..+--..+-|++..+++-=
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~- 159 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTES- 159 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccc-
Confidence 5666666677778899999999999999999998888888888777776666655444443333333444444444310
Q ss_pred CCCCCchhhhHhhhccccCCCchhHHHHHhHHhhhcccCccchhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccCchhh
Q 001368 964 PELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSV 1043 (1091)
Q Consensus 964 PeLq~~s~~~~~~~~~~~~~~~~~eai~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a~~v 1043 (1091)
+ ..++++.+||.|...+.-..+.-|...+.=++.|--.-..++
T Consensus 160 ------------------~-------------------~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m 202 (675)
T KOG0212|consen 160 ------------------A-------------------STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEM 202 (675)
T ss_pred ------------------c-------------------cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHH
Confidence 0 068899999999999999999999999999999998888888
Q ss_pred hhh--chHHHHHHhhccCCCHHHHH
Q 001368 1044 IEE--RIEGNLFHMLDEETDSEYVK 1066 (1091)
Q Consensus 1044 ~~~--~le~~Lf~~LD~e~d~~l~~ 1066 (1091)
+.. .+-+-||.||-++.+ ++++
T Consensus 203 ~~yl~~~ldGLf~~LsD~s~-eVr~ 226 (675)
T KOG0212|consen 203 ISYLPSLLDGLFNMLSDSSD-EVRT 226 (675)
T ss_pred HhcchHHHHHHHHHhcCCcH-HHHH
Confidence 873 788889999987754 5554
No 58
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.90 E-value=0.47 Score=35.32 Aligned_cols=30 Identities=33% Similarity=0.275 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 001368 421 LDSTVVAAVSHSSQLVRIEAALTLRALAEV 450 (1091)
Q Consensus 421 l~d~l~~ll~hps~svRi~AA~cLr~~~~a 450 (1091)
+...+++++.+|+..||.+|++||-.++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 456789999999999999999999998854
No 59
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=90.89 E-value=19 Score=42.53 Aligned_cols=197 Identities=16% Similarity=0.165 Sum_probs=121.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCchh-hHHHHHHHHHHhhcCCcc---hhHHhHHHHHHhhhc----------------
Q 001368 55 KESILLWQRKCEDALYSLLILGARRPV-RHLASVAMGRIISKGDNI---SVYSRVSSLQGFLSD---------------- 114 (1091)
Q Consensus 55 k~di~~~Q~~l~~~L~~~l~~~~g~P~-R~l~a~cla~l~~~GD~~---~lfdtvn~l~~iL~~---------------- 114 (1091)
.++.+..-+.+.+...++|..-...|. -.++..|+--|=+.-.+. .+|..=+.|..|+..
T Consensus 128 ~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~Elf 207 (370)
T PF08506_consen 128 EEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELF 207 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHH
Confidence 355555666677777777765444444 567777887766543332 366544455555532
Q ss_pred -------------CCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHHhcC
Q 001368 115 -------------GKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFN---EEFVRQEALLLLQNALEGS 178 (1091)
Q Consensus 115 -------------~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~---~a~~R~~~l~~L~kil~g~ 178 (1091)
+.| +-++|.||...|-.+-+.+++.+...+...++.++.-..++ +..-.-.++.++..+....
T Consensus 208 EddP~EYIrrd~e~sd-~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~ 286 (370)
T PF08506_consen 208 EDDPEEYIRRDLEGSD-SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKG 286 (370)
T ss_dssp HHSHHHHHHHHSCSS----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS
T ss_pred ccCHHHHHHhhccccc-cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhh
Confidence 111 22345599999999999999999999888888888765542 3345666777777765533
Q ss_pred CC-----CC-chh-HHHHHHHHHHHHhcc---CcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhH
Q 001368 179 GG-----SA-AAS-AYSEAFRLIMRFAIV---DKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASV 248 (1091)
Q Consensus 179 g~-----~~-~~~-~~~di~K~~~r~~~~---Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~v 248 (1091)
.. +. .+. -.-++|......=++ ++...+|+-|++.+...-++ +....+..+.....+.+.++++.|
T Consensus 287 ~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~----l~~~~l~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 287 STTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ----LPKEQLLQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp --BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG----S-HHHHHHHHHHHHHHTTSS-HHH
T ss_pred ccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHhCCCCcch
Confidence 21 11 011 135666652222122 35666787778877655554 345677889999999999999999
Q ss_pred HHHHHHHH
Q 001368 249 RDAFAEAL 256 (1091)
Q Consensus 249 R~a~A~~L 256 (1091)
|..+|.|+
T Consensus 363 ~tyAA~~i 370 (370)
T PF08506_consen 363 HTYAAIAI 370 (370)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhhC
Confidence 99999875
No 60
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.74 E-value=80 Score=43.09 Aligned_cols=345 Identities=15% Similarity=0.083 Sum_probs=183.3
Q ss_pred HHhhccCChhhHHHHHHHHHHHHHHHhhc--CCCchh----hHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhc-CC-CC
Q 001368 47 ISAIDEEPKESILLWQRKCEDALYSLLIL--GARRPV----RHLASVAMGRIISKGDNISVYSRVSSLQGFLSD-GK-KS 118 (1091)
Q Consensus 47 ~~~l~~~~k~di~~~Q~~l~~~L~~~l~~--~~g~P~----R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~-~K-~~ 118 (1091)
-+.|..-+-+++++.-+++=+++|++.-. -.-|-. -+.+++-.+++-+.-++..==+.+..+.-+|=+ |- .+
T Consensus 1064 ~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~ 1143 (1702)
T KOG0915|consen 1064 ADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSK 1143 (1702)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccc
Confidence 34555667777788777777777776541 111112 222444444444444443333333333333321 11 11
Q ss_pred ChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcH-------------------HHHHHH------HHHHHH
Q 001368 119 EPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEE-------------------FVRQEA------LLLLQN 173 (1091)
Q Consensus 119 sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a-------------------~~R~~~------l~~L~k 173 (1091)
=++.+..++..+-++-+..|.++--.+++....++..+-..|. ..|.++ |.++++
T Consensus 1144 v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ 1223 (1702)
T KOG0915|consen 1144 VNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINK 1223 (1702)
T ss_pred hHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHH
Confidence 2343446889999999999999999999988888887765433 234332 555666
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHH
Q 001368 174 ALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFA 253 (1091)
Q Consensus 174 il~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A 253 (1091)
.+..+-.+.-+...-.+-+. +|... ..+-|.+++.....|+...+.= .+.=-.++...||-.+++-|..+|+++|
T Consensus 1224 ci~~iD~~vLeelip~l~el-~R~sV---gl~Tkvg~A~fI~~L~~r~~~e-mtP~sgKll~al~~g~~dRNesv~kafA 1298 (1702)
T KOG0915|consen 1224 CINYIDISVLEELIPRLTEL-VRGSV---GLGTKVGCASFISLLVQRLGSE-MTPYSGKLLRALFPGAKDRNESVRKAFA 1298 (1702)
T ss_pred HHHhhhHHHHHHHHHHHHHH-HhccC---CCCcchhHHHHHHHHHHHhccc-cCcchhHHHHHHhhccccccHHHHHHHH
Confidence 55544433323344445553 45432 2334445544444444432111 1111257999999999999999999999
Q ss_pred HHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchh
Q 001368 254 EALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSEL 333 (1091)
Q Consensus 254 ~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~ 333 (1091)
.+.|.++ ++-.|. +.+--+.+++...|-+-. +.+.++.++.-
T Consensus 1299 sAmG~L~-k~Ss~d---------------q~qKLie~~l~~~l~k~e--s~~siscatis-------------------- 1340 (1702)
T KOG0915|consen 1299 SAMGYLA-KFSSPD---------------QMQKLIETLLADLLGKDE--SLKSISCATIS-------------------- 1340 (1702)
T ss_pred HHHHHHH-hcCChH---------------HHHHHHHHHHHHHhccCC--CccchhHHHHH--------------------
Confidence 9999988 433332 111112223334444443 33455555442
Q ss_pred hHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCC
Q 001368 334 QDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEV 413 (1091)
Q Consensus 334 ~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa 413 (1091)
++..+..+++.++.+ ..+=+|+=.--.+ |++-.++.+.+|....+.+..- +-+-
T Consensus 1341 -~Ian~s~e~Lkn~as------aILPLiFLa~~ee---~Ka~q~Lw~dvW~e~vsggagt--vrl~-------------- 1394 (1702)
T KOG0915|consen 1341 -NIANYSQEMLKNYAS------AILPLIFLAMHEE---EKANQELWNDVWAELVSGGAGT--VRLY-------------- 1394 (1702)
T ss_pred -HHHHhhHHHHHhhHH------HHHHHHHHHHhHH---HHHHHHHHHHHHHHhCCCCcch--hhhh--------------
Confidence 133333444433221 1111111000000 6666777777776543333221 1011
Q ss_pred chhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCc-chhhHHHHHH
Q 001368 414 PSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPT-CVSGLITYGV 463 (1091)
Q Consensus 414 ~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~-~~~~ll~~~~ 463 (1091)
..+.+.-.....+.+.+..+|-.+|..+|..+...-+ +..|.+....
T Consensus 1395 ---~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~ 1442 (1702)
T KOG0915|consen 1395 ---LLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLA 1442 (1702)
T ss_pred ---HHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHH
Confidence 1222333444566677799999999999999966554 3335554433
No 61
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=90.60 E-value=0.99 Score=42.72 Aligned_cols=108 Identities=18% Similarity=0.127 Sum_probs=73.3
Q ss_pred hHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHH---HhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCC
Q 001368 104 RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQ---FGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGG 180 (1091)
Q Consensus 104 tvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~---~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~ 180 (1091)
.+..+.++++ +.++..+..|+.||+.+... .-+.+.. ...+..+++.+...+..+|..++.+|..+..+-..
T Consensus 8 ~i~~l~~~l~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 8 GLPALVSLLS---SSDENVQREAAWALSNLSAGNNDNIQAVVE--AGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred ChHHHHHHHH---cCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 4567777776 33455555899999988753 3333322 26788888889888899999999999999875431
Q ss_pred CCchhHH-HHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Q 001368 181 SAAASAY-SEAFRLIMRFAIVDKSFVVRIAGARCLKAFA 218 (1091)
Q Consensus 181 ~~~~~~~-~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~ 218 (1091)
.. ...+ ..+.+. .-..+.|.+..||..|+.++..+.
T Consensus 83 ~~-~~~~~~g~l~~-l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NK-LIVLEAGGVPK-LVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HH-HHHHHCCChHH-HHHHHhcCCHHHHHHHHHHHHHhh
Confidence 11 2122 224453 444577888999999999987764
No 62
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.47 E-value=2.9 Score=43.97 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=70.5
Q ss_pred hHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHHHH
Q 001368 120 PQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA--AASAYSEAFRLIMRF 197 (1091)
Q Consensus 120 p~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~--~~~~~~di~K~~~r~ 197 (1091)
|..|..|+.++|++...++..+ +..+..+.+.++..++.+|..++..|...+.. | .. .......+.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~v----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d-~ik~k~~l~~~~l~----- 70 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLV----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-D-MIKVKGQLFSRILK----- 70 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-C-ceeehhhhhHHHHH-----
Confidence 5566789999999999887665 44555688999999999999999999998763 2 22 2333344444
Q ss_pred hccCcchHHHHHHHHHHHHHHhh
Q 001368 198 AIVDKSFVVRIAGARCLKAFAHI 220 (1091)
Q Consensus 198 ~~~Dks~~Vr~aAa~cL~~l~~~ 220 (1091)
++.|.+..||..|..|+.++...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 47999999999999999998887
No 63
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=89.37 E-value=12 Score=42.95 Aligned_cols=170 Identities=31% Similarity=0.350 Sum_probs=111.6
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCC
Q 001368 40 FDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSE 119 (1091)
Q Consensus 40 f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~s 119 (1091)
++.+..++....... +.-.+.+.+.+... -+++|...+.-+..+ |+. +.+..+.+++. +.+
T Consensus 27 ~~~l~~~~~~~~~~~--------~~~~~~~~~~l~~~-~~~vr~~aa~~l~~~---~~~----~av~~l~~~l~---d~~ 87 (335)
T COG1413 27 LQALAELDDLILELA--------PEAADELLKLLEDE-DLLVRLSAAVALGEL---GSE----EAVPLLRELLS---DED 87 (335)
T ss_pred HHHHhccchhhcccc--------hhhHHHHHHHHcCC-CHHHHHHHHHHHhhh---chH----HHHHHHHHHhc---CCC
Confidence 455555444443333 33345555555544 788899988874333 322 24556666665 556
Q ss_pred hHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHh
Q 001368 120 PQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFA 198 (1091)
Q Consensus 120 p~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~-~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~ 198 (1091)
+..+..|+.+||.+ ..++++..+.+.+++ .+..+|..+..+|.+ +| ++....+++..
T Consensus 88 ~~vr~~a~~aLg~~----------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~----~~---~~~a~~~l~~~----- 145 (335)
T COG1413 88 PRVRDAAADALGEL----------GDPEAVPPLVELLENDENEGVRAAAARALGK----LG---DERALDPLLEA----- 145 (335)
T ss_pred HHHHHHHHHHHHcc----------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHh----cC---chhhhHHHHHH-----
Confidence 66566788877732 357888899999996 678899999988887 44 34456677774
Q ss_pred ccCcc------------hHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 001368 199 IVDKS------------FVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1091)
Q Consensus 199 ~~Dks------------~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa 261 (1091)
+.|.. ..||.++++-+..+.. +.........+++.+..||.+++..|+.+..
T Consensus 146 l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~ 209 (335)
T COG1413 146 LQDEDSGSAAAALDAALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGS 209 (335)
T ss_pred hccchhhhhhhhccchHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhc
Confidence 44433 2577777766644443 2356677788888888999999999999773
No 64
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=89.27 E-value=6.9 Score=46.84 Aligned_cols=147 Identities=16% Similarity=0.087 Sum_probs=95.1
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHH
Q 001368 67 DALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLL 146 (1091)
Q Consensus 67 ~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~ 146 (1091)
+.|.+.+ ..+.+.+|.-+++.|+.+... +.+..|...|+ +.+|.-+.+++..+|. .| .
T Consensus 89 ~~L~~~L-~d~~~~vr~aaa~ALg~i~~~-------~a~~~L~~~L~---~~~p~vR~aal~al~~----r~-------~ 146 (410)
T TIGR02270 89 RSVLAVL-QAGPEGLCAGIQAALGWLGGR-------QAEPWLEPLLA---ASEPPGRAIGLAALGA----HR-------H 146 (410)
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHhcCCch-------HHHHHHHHHhc---CCChHHHHHHHHHHHh----hc-------c
Confidence 3444433 234455899999999876443 24556777775 5577766567766664 11 2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcc
Q 001368 147 ETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLG 226 (1091)
Q Consensus 147 e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~ 226 (1091)
+....+.+.++..++.+|.+++.+|++ +|... ....+. .++.|.+..||.+|+..+..+-.
T Consensus 147 ~~~~~L~~~L~d~d~~Vra~A~raLG~----l~~~~---a~~~L~-----~al~d~~~~VR~aA~~al~~lG~------- 207 (410)
T TIGR02270 147 DPGPALEAALTHEDALVRAAALRALGE----LPRRL---SESTLR-----LYLRDSDPEVRFAALEAGLLAGS------- 207 (410)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHh----hcccc---chHHHH-----HHHcCCCHHHHHHHHHHHHHcCC-------
Confidence 344568888888899999999999998 44221 112222 34889999999999999855532
Q ss_pred cchhhhHHHHHHHhccCCChhHHHHHHHHHHH
Q 001368 227 VGELDNSATHCVKAIEDPIASVRDAFAEALGS 258 (1091)
Q Consensus 227 ~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~ 258 (1091)
+.-...|.++...++..+|..++..++.
T Consensus 208 ----~~A~~~l~~~~~~~g~~~~~~l~~~lal 235 (410)
T TIGR02270 208 ----RLAWGVCRRFQVLEGGPHRQRLLVLLAV 235 (410)
T ss_pred ----HhHHHHHHHHHhccCccHHHHHHHHHHh
Confidence 2234566665566666676666655554
No 65
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.22 E-value=28 Score=44.61 Aligned_cols=136 Identities=15% Similarity=0.061 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHH
Q 001368 128 QCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVR 207 (1091)
Q Consensus 128 ~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr 207 (1091)
++++.+.++.|.+...-+.......++.++..+-..|.+.|..|+..+........+ ..-|..+.+..-..+|.+..||
T Consensus 828 Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev~~~Il~l~~~d~s~~vR 906 (982)
T KOG4653|consen 828 EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHEVLQLILSLETTDGSVLVR 906 (982)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHccCCchhhH
Confidence 889999999999999999999999999999776678999999999888766544433 4555555567778899999999
Q ss_pred HHHHHHHHHHHhhcC----CCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhcc
Q 001368 208 IAGARCLKAFAHIGG----PCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGM 264 (1091)
Q Consensus 208 ~aAa~cL~~l~~~~~----~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~ 264 (1091)
+||+..+..+.+.++ |++..--+|...++---.-..+++.+|..+-.|+=++.+..-
T Consensus 907 RaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~ 967 (982)
T KOG4653|consen 907 RAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALE 967 (982)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 999998888877652 111112233344444444556777788888888887775544
No 66
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.59 E-value=1e+02 Score=41.20 Aligned_cols=186 Identities=16% Similarity=0.146 Sum_probs=119.1
Q ss_pred ChHhHHHHHHHHHHHHHHHh----hHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC------chhHHH
Q 001368 119 EPQKVAGAAQCLGELYRQFG----RRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA------AASAYS 188 (1091)
Q Consensus 119 sp~~~~aA~~cLG~l~~~~G----~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~------~~~~~~ 188 (1091)
+|.+. .++.||-.+|+.++ ..+....+| ++=.+|-.+...|..++.+|-.|.+ +-.+. .+...-
T Consensus 711 ~~~~~-~rl~~L~~L~~~~~~e~~~~i~k~I~E----vIL~~Ke~n~~aR~~Af~lL~~i~~-i~~~~d~g~e~~~~~ln 784 (1176)
T KOG1248|consen 711 SPAQA-SRLKCLKRLLKLLSAEHCDLIPKLIPE----VILSLKEVNVKARRNAFALLVFIGA-IQSSLDDGNEPASAILN 784 (1176)
T ss_pred hHHHH-HHHHHHHHHHHhccHHHHHHHHHHHHH----HHHhcccccHHHHhhHHHHHHHHHH-HHhhhcccccchHHHHH
Confidence 34454 89999999999999 445444444 3444487888889999999888773 11111 144677
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccC-CC
Q 001368 189 EAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMN-PQ 267 (1091)
Q Consensus 189 di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~-~~ 267 (1091)
++.. ....++.-.++.+++...=-+..++.+...++...-++.+.+.+-=.+-+.+.++|.++=..+..+. +. |.
T Consensus 785 efl~-~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv---~~~pe 860 (1176)
T KOG1248|consen 785 EFLS-IISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLV---YKFPE 860 (1176)
T ss_pred HHHH-HHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HcCCH
Confidence 7777 4666666666666655332333333332345566667888888888899999999998877776655 22 21
Q ss_pred CcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCC
Q 001368 268 AQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHP 329 (1091)
Q Consensus 268 ~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~ 329 (1091)
... ...+++.|..++. .++- .++++|.-+-.-.-.+++..|-..+|.
T Consensus 861 ~~l----------~~~~~~LL~sll~--ls~d---~k~~~r~Kvr~LlekLirkfg~~eLe~ 907 (1176)
T KOG1248|consen 861 ECL----------SPHLEELLPSLLA--LSHD---HKIKVRKKVRLLLEKLIRKFGAEELES 907 (1176)
T ss_pred HHH----------hhhHHHHHHHHHH--HHHh---hhHHHHHHHHHHHHHHHHHhCHHHHHh
Confidence 100 1123444432222 2222 468999999988899999998877664
No 67
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.46 E-value=85 Score=40.17 Aligned_cols=296 Identities=18% Similarity=0.173 Sum_probs=165.9
Q ss_pred hcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcC
Q 001368 143 SGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGG 222 (1091)
Q Consensus 143 s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~ 222 (1091)
.+.-..++.+-|.+|.....+|+.|++.|.. +..++ ..-|--.+.|-|.+|-+.-||..||-.+-.|+.-+
T Consensus 104 dLALLSIntfQk~L~DpN~LiRasALRvlSs----IRvp~----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd- 174 (968)
T KOG1060|consen 104 DLALLSINTFQKALKDPNQLIRASALRVLSS----IRVPM----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD- 174 (968)
T ss_pred CceeeeHHHHHhhhcCCcHHHHHHHHHHHHh----cchhh----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-
Confidence 3455678889999999889999999998876 33222 33333446777899999999999998887777654
Q ss_pred CCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH------------------------------------HhccCC
Q 001368 223 PCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL------------------------------------ALGMNP 266 (1091)
Q Consensus 223 ~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL------------------------------------a~~~~~ 266 (1091)
.++-+.+...+=|.+.+-++-|=-++.-++-++- |..+.+
T Consensus 175 ----~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~ 250 (968)
T KOG1060|consen 175 ----PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLP 250 (968)
T ss_pred ----hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCC
Confidence 2334456666666676655555444443332221 111112
Q ss_pred CCcCCC-----CC-------CC-CCCCCCChHHHHHHHhh--hhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCc
Q 001368 267 QAQVQP-----KG-------KG-PFPPAKKLEGGLQRHLA--LPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDS 331 (1091)
Q Consensus 267 ~~~~~~-----~~-------k~-~~~~~k~~e~~l~~~Ls--~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~ 331 (1091)
+..... .+ +. +..+....+..+.-+|- .+.+.+ .+--|=.+++++|-++--..
T Consensus 251 ~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S---~n~sVVmA~aql~y~lAP~~--------- 318 (968)
T KOG1060|consen 251 DPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQS---RNPSVVMAVAQLFYHLAPKN--------- 318 (968)
T ss_pred CccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhc---CCcHHHHHHHhHHHhhCCHH---------
Confidence 210000 00 00 00011111111100111 111111 22233345555554442211
Q ss_pred hhhHHHHHHHHHhccCCCccHHHHHHHHHH---------------------------HH-HhhhccCCcHHHHHHHHHHH
Q 001368 332 ELQDYALQVMDMLRADIFVDSHALACVLYI---------------------------LR-IGVTDQMTEPTQRSFLVFLG 383 (1091)
Q Consensus 332 ~~~~y~~~i~~ll~~~~~~~~~~r~~v~~I---------------------------Lr-~~i~~~LgE~~Q~~~~~~l~ 383 (1091)
.+..+..-++.++..++-+.....++|.+| |. .++..+..|+.=.++++.+-
T Consensus 319 ~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q 398 (968)
T KOG1060|consen 319 QVTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQ 398 (968)
T ss_pred HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 124455555555555443333333222222 11 11122223433344444444
Q ss_pred hhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcchhhHHHHHH
Q 001368 384 KQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGV 463 (1091)
Q Consensus 384 ~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll~~~~ 463 (1091)
..+.+.|. .....+.+++|.--..+|+.++. |.+.|++++..-+..|=.+|+..+|.+....|.+.-.+|-+..
T Consensus 399 ~YI~s~d~--~faa~aV~AiGrCA~~~~sv~~t----CL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La 472 (968)
T KOG1060|consen 399 TYIKSSDR--SFAAAAVKAIGRCASRIGSVTDT----CLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLA 472 (968)
T ss_pred HHHhcCch--hHHHHHHHHHHHHHHhhCchhhH----HHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 44444444 25557888888777777776554 9999999999999999999999999999999999888888777
Q ss_pred HHHHhh
Q 001368 464 TTLNAL 469 (1091)
Q Consensus 464 ~~L~~~ 469 (1091)
..+...
T Consensus 473 ~lldti 478 (968)
T KOG1060|consen 473 RLLDTI 478 (968)
T ss_pred HHhhhh
Confidence 766444
No 68
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.19 E-value=27 Score=43.50 Aligned_cols=248 Identities=19% Similarity=0.162 Sum_probs=135.6
Q ss_pred HHHHHHHHHHhhcCCCchhhHHHHHHHHHHh----hcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHh
Q 001368 63 RKCEDALYSLLILGARRPVRHLASVAMGRII----SKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFG 138 (1091)
Q Consensus 63 ~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~----~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G 138 (1091)
-+.-+.|+.++...+.-|.+-++-+--+.+| +.|.+-..|+ .... |...+++.+..+..|+.||+.++..-+
T Consensus 136 a~~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~---~~~~-lg~~~ss~~~d~~~~~~~l~~~~~~~D 211 (823)
T KOG2259|consen 136 AQYLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLYC---FHLP-LGVSPSSLTHDREHAARGLIYLEHDQD 211 (823)
T ss_pred HHHHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHHH---Hhhh-cccCCCcccccHHHHHHHHHHHhcCCC
Confidence 4455666666666666666655555555544 3455544443 1111 111222223222234444444433222
Q ss_pred hHH--------------hhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC-----chhHHHHHHHHHHHHhc
Q 001368 139 RRI--------------TSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA-----AASAYSEAFRLIMRFAI 199 (1091)
Q Consensus 139 ~~l--------------~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~-----~~~~~~di~K~~~r~~~ 199 (1091)
-.+ .-+...+.+-+.|.|+.....+|.++++++--.=...-... +....-|.|-.+.+ ++
T Consensus 212 ~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~-~v 290 (823)
T KOG2259|consen 212 FRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCR-AV 290 (823)
T ss_pred cchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHH-HH
Confidence 221 12244567888889998999999999998865444331122 23345555554333 68
Q ss_pred cCcchHHHHHHHHHHHHHHhhcCCCc------------------------------ccc------hh---------hhH-
Q 001368 200 VDKSFVVRIAGARCLKAFAHIGGPCL------------------------------GVG------EL---------DNS- 233 (1091)
Q Consensus 200 ~Dks~~Vr~aAa~cL~~l~~~~~~~~------------------------------~~~------dl---------E~l- 233 (1091)
.|.+..||+-|++-++.+-+-+..++ |++ |. |++
T Consensus 291 ~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI 370 (823)
T KOG2259|consen 291 RDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESII 370 (823)
T ss_pred hcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccc
Confidence 99999999999998865422110000 111 10 001
Q ss_pred ----HHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHH
Q 001368 234 ----ATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRV 309 (1091)
Q Consensus 234 ----~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~ 309 (1091)
.-..+.++|+.-|+||.|+-..+..+. ++.+ .-.+.++. +|+.-|..-- -+||.
T Consensus 371 ~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La---~ssP--------------~FA~~ald-fLvDMfNDE~----~~VRL 428 (823)
T KOG2259|consen 371 PSGACGALVHGLEDEFYEVRRAAVASLCSLA---TSSP--------------GFAVRALD-FLVDMFNDEI----EVVRL 428 (823)
T ss_pred cccccceeeeechHHHHHHHHHHHHHHHHHH---cCCC--------------CcHHHHHH-HHHHHhccHH----HHHHH
Confidence 134567788888889988888887765 2211 12245664 8888886653 67777
Q ss_pred HHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhc
Q 001368 310 NLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLR 345 (1091)
Q Consensus 310 Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~ 345 (1091)
-...+.......+-- -..++..|.+-+.
T Consensus 429 ~ai~aL~~Is~~l~i--------~eeql~~il~~L~ 456 (823)
T KOG2259|consen 429 KAIFALTMISVHLAI--------REEQLRQILESLE 456 (823)
T ss_pred HHHHHHHHHHHHhee--------cHHHHHHHHHHHH
Confidence 666665555544211 1466666666554
No 69
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=87.25 E-value=0.97 Score=33.62 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 001368 1009 HVQTLLSTLSSRQPILRHLAVSTLRHLIE 1037 (1091)
Q Consensus 1009 lV~~L~~~L~S~~~~Lr~aAv~cLrqL~q 1037 (1091)
++|.|.+.|.++++..|.+|+.||.+++|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999986
No 70
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.08 E-value=18 Score=44.89 Aligned_cols=61 Identities=25% Similarity=0.228 Sum_probs=37.2
Q ss_pred HhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 001368 197 FAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 197 ~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
+++.|.-+.||.||...+-.|+... |-|-.. ...+..-.|.+....||.-+=..|-.+...
T Consensus 380 hGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 380 HGLEDEFYEVRRAAVASLCSLATSS-PGFAVR----ALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred eechHHHHHHHHHHHHHHHHHHcCC-CCcHHH----HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999988888888875 544322 223333445555555665555554444443
No 71
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.04 E-value=1.2e+02 Score=39.11 Aligned_cols=325 Identities=14% Similarity=0.134 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHhh-------------cCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhh---cCCCCC----h
Q 001368 61 WQRKCEDALYSLLI-------------LGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLS---DGKKSE----P 120 (1091)
Q Consensus 61 ~Q~~l~~~L~~~l~-------------~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~---~~K~~s----p 120 (1091)
.=|+|...|+++|. .+.+-|-=+.=.==+-.|++.||.. .+| .++|+|. .+.|++ .
T Consensus 216 ~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d-aSd---~M~DiLaqvatntdsskN~Gn 291 (866)
T KOG1062|consen 216 YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD-ASD---LMNDILAQVATNTDSSKNAGN 291 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc-HHH---HHHHHHHHHHhcccccccchh
Confidence 44557788887776 1233343221112245678888874 344 5555554 232433 2
Q ss_pred HhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcc
Q 001368 121 QKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIV 200 (1091)
Q Consensus 121 ~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~ 200 (1091)
+.+.=.+.|+-+++.. +++-...+.++-|.+++..--.||-++.+|-+++..-- .+ -.-||. ..=.|+.
T Consensus 292 AILYE~V~TI~~I~~~-----~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~-~a-vqrHr~----tIleCL~ 360 (866)
T KOG1062|consen 292 AILYECVRTIMDIRSN-----SGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDP-TA-VQRHRS----TILECLK 360 (866)
T ss_pred HHHHHHHHHHHhccCC-----chHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCc-HH-HHHHHH----HHHHHhc
Confidence 3444455555555543 35566789999999999888899999999999987222 11 122332 2445899
Q ss_pred CcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCC
Q 001368 201 DKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPP 280 (1091)
Q Consensus 201 Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~ 280 (1091)
|.+..+|+=|.+-..+|.+. +++..+..=..+++|.++.+.|.-.|.-+.++. ..+.|. +
T Consensus 361 DpD~SIkrralELs~~lvn~-------~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~la-EkfaP~------------k 420 (866)
T KOG1062|consen 361 DPDVSIKRRALELSYALVNE-------SNVRVMVKELLEFLESSDEDFKADIASKIAELA-EKFAPD------------K 420 (866)
T ss_pred CCcHHHHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-HhcCCc------------c
Confidence 99999999999988877775 577888888899999999999999999988876 445443 2
Q ss_pred CCChHHHHHHHhhhh--hcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHH-HHHHhccC--CCccHH-H
Q 001368 281 AKKLEGGLQRHLALP--FTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQ-VMDMLRAD--IFVDSH-A 354 (1091)
Q Consensus 281 ~k~~e~~l~~~Ls~~--f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~-i~~ll~~~--~~~~~~-~ 354 (1091)
...+ |.|.+.|... |++.. .+-.|++.+.+.|-|. ..|... +..-+... ..++.. -
T Consensus 421 ~W~i-dtml~Vl~~aG~~V~~d-------------v~~nll~LIa~~~~e~----~~y~~~rLy~a~~~~~~~~is~e~l 482 (866)
T KOG1062|consen 421 RWHI-DTMLKVLKTAGDFVNDD-------------VVNNLLRLIANAFQEL----HEYAVLRLYLALSEDTLLDISQEPL 482 (866)
T ss_pred hhHH-HHHHHHHHhcccccchh-------------hHHHHHHHHhcCCcch----hhHHHHHHHHHHhhhhhhhhhhhhH
Confidence 2233 4444555532 44442 5566777777766653 344421 11111111 011110 0
Q ss_pred HHHHHHHHH---Hhh--hccCCcHHH---HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Q 001368 355 LACVLYILR---IGV--TDQMTEPTQ---RSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVV 426 (1091)
Q Consensus 355 r~~v~~ILr---~~i--~~~LgE~~Q---~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~ 426 (1091)
.+-+.|.+- +.+ +....|+-| .++...|.+-+.+-..+.-+---||-++..|=.+++++ .+.++..+.
T Consensus 483 ~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~----~~ri~~lI~ 558 (866)
T KOG1062|consen 483 LQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS----SERIKQLIS 558 (866)
T ss_pred HHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc----HHHHHHHHH
Confidence 122222210 000 101111112 23444444333222222112223444444444555555 455777777
Q ss_pred HHhcCCchHHHHHHHH
Q 001368 427 AAVSHSSQLVRIEAAL 442 (1091)
Q Consensus 427 ~ll~hps~svRi~AA~ 442 (1091)
+.-.|=+...|..|-.
T Consensus 559 ~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 559 SYKSSLDTELQQRAVE 574 (866)
T ss_pred HhcccccHHHHHHHHH
Confidence 7888888878777654
No 72
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.53 E-value=22 Score=41.39 Aligned_cols=85 Identities=16% Similarity=0.108 Sum_probs=71.2
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHH
Q 001368 388 AVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLN 467 (1091)
Q Consensus 388 ~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~ 467 (1091)
..+.+......||+++-.+++++-.+-.-+.-+-..+++..+-|+...+|-.|||.+-+.+.++|..-.++++.- .++
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~--~L~ 169 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELG--ALS 169 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc--cHH
Confidence 344556678899999999999999998877777777888899999999999999999999999999888888753 666
Q ss_pred hhhhhhc
Q 001368 468 ALRENVS 474 (1091)
Q Consensus 468 ~~~~~l~ 474 (1091)
++...++
T Consensus 170 ~Ll~~ls 176 (342)
T KOG2160|consen 170 KLLKILS 176 (342)
T ss_pred HHHHHHc
Confidence 6655544
No 73
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=84.88 E-value=28 Score=39.76 Aligned_cols=144 Identities=20% Similarity=0.169 Sum_probs=94.0
Q ss_pred HHHHHHhhc---CCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhh
Q 001368 67 DALYSLLIL---GARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITS 143 (1091)
Q Consensus 67 ~~L~~~l~~---~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s 143 (1091)
.-+.++|.+ ++-+++|+..=+||+- |.-=|...--+.+..+...+. ++ ++.-+..|+.++.++.-.||.....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl-~~Lld~~~a~~~l~l~~~~~~--~~-~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGL-CCLLDKELAKEHLPLFLQALQ--KD-DEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHhChHHHHHHHHHHHHHHH--hC-CHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344445543 3667899999999873 444344444555555555553 23 4554458999999999999987776
Q ss_pred cHHH---------HHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 001368 144 GLLE---------TTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAA-ASAYSEAFRLIMRFAIVDKSFVVRIAGARC 213 (1091)
Q Consensus 144 ~~~e---------~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~-~~~~~di~K~~~r~~~~Dks~~Vr~aAa~c 213 (1091)
.... ....+.+.+++.++.+|..+...+.|++- .|.-.+ +.+.+.+...-+.-...| .... -+|
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL-~~~i~~~~~vL~~Lll~yF~p~t~~-~~~L----rQ~ 175 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL-SGRISDPPKVLSRLLLLYFNPSTED-NQRL----RQC 175 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHcCcccCC-cHHH----HHH
Confidence 6664 77788888888888899999999999887 554445 555555555433332222 2222 356
Q ss_pred HHHHHhh
Q 001368 214 LKAFAHI 220 (1091)
Q Consensus 214 L~~l~~~ 220 (1091)
|...+..
T Consensus 176 L~~Ffp~ 182 (298)
T PF12719_consen 176 LSVFFPV 182 (298)
T ss_pred HHHHHHH
Confidence 6666555
No 74
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=84.64 E-value=21 Score=45.61 Aligned_cols=121 Identities=15% Similarity=0.077 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHhhcCCcchhHHhHHHHHHhhh--cCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccC
Q 001368 82 RHLASVAMGRIISKGDNISVYSRVSSLQGFLS--DGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFN 159 (1091)
Q Consensus 82 R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~--~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~ 159 (1091)
|.-..|=+.+....||. +++ .+.++++ ..+|.+-+|+ ++-==..|.++-. ..+-..|+.+.|-++..
T Consensus 36 kidAmK~iIa~M~~G~d--mss---Lf~dViK~~~trd~ElKrL---~ylYl~~yak~~P---~~~lLavNti~kDl~d~ 104 (757)
T COG5096 36 KIDAMKKIIAQMSLGED--MSS---LFPDVIKNVATRDVELKRL---LYLYLERYAKLKP---ELALLAVNTIQKDLQDP 104 (757)
T ss_pred HHHHHHHHHHHHhcCCC--hHH---HHHHHHHHHHhcCHHHHHH---HHHHHHHHhccCH---HHHHHHHHHHHhhccCC
Confidence 33344444555566666 333 5556665 2233333343 2333334443333 45677888888888888
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q 001368 160 EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 160 ~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
.+.+|+.+|+++.+ ++ +..+..-+++ ..|.+++|+..-||..|+-|+..+++-+
T Consensus 105 N~~iR~~AlR~ls~----l~---~~el~~~~~~-~ik~~l~d~~ayVRk~Aalav~kly~ld 158 (757)
T COG5096 105 NEEIRGFALRTLSL----LR---VKELLGNIID-PIKKLLTDPHAYVRKTAALAVAKLYRLD 158 (757)
T ss_pred CHHHHHHHHHHHHh----cC---hHHHHHHHHH-HHHHHccCCcHHHHHHHHHHHHHHHhcC
Confidence 89999999999988 44 3557777777 4788899999999999999999999875
No 75
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=83.70 E-value=31 Score=44.78 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=68.4
Q ss_pred hhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Q 001368 142 TSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA-AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHI 220 (1091)
Q Consensus 142 ~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~-~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~ 220 (1091)
+.-.....-.++-.+|.-.++.|.+....|.+-++..|... .....++.-+...++ .+|++-+||-||.+|+..+.+.
T Consensus 366 s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~-~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 366 STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKH-INDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhh-ccCCcHHHHHHHHHHHHHHHHH
Confidence 44455566667777888789999999999999999999543 222334444433333 6899999999999999999997
Q ss_pred cCCCcccchhhhHHHHHHHhccCC
Q 001368 221 GGPCLGVGELDNSATHCVKAIEDP 244 (1091)
Q Consensus 221 ~~~~~~~~dlE~l~tl~~K~le~s 244 (1091)
-| |......++-+++.
T Consensus 445 ~G--------e~~~~k~L~~~~~~ 460 (815)
T KOG1820|consen 445 HG--------EEVFKKLLKDLDKQ 460 (815)
T ss_pred hh--------HHHHHHHHHhhccc
Confidence 42 56666666666654
No 76
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.65 E-value=63 Score=43.95 Aligned_cols=198 Identities=14% Similarity=0.087 Sum_probs=123.1
Q ss_pred chhHHHHHHHHHhhhccCCCCchHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhh
Q 001368 15 FGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIIS 94 (1091)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~ 94 (1091)
|-.++.|++-+-..-.-.-+|-..++|=|.... ...-..-.|+.+-=..+-..++.++..+-+--+=+ ...-+..+++
T Consensus 96 f~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k-~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~-~~~i~~~li~ 173 (1266)
T KOG1525|consen 96 FQLILSQFSGLGDVESPYFKRYFYLLETLAKVK-FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN-MLDIAIMLIT 173 (1266)
T ss_pred HHHHHHHHhhccCCCCcchhhHHHHHHHHHHhH-HHheeeccchHHHHHHHHHHHHHHHhccccHHHHH-HHHHHHHHHH
Confidence 667889999888888888888889999888877 66667777777777777777777776554444434 6667777777
Q ss_pred cCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHH-------------------------------------HHHHHHHHH
Q 001368 95 KGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQ-------------------------------------CLGELYRQF 137 (1091)
Q Consensus 95 ~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~-------------------------------------cLG~l~~~~ 137 (1091)
.+|+-..-=-.--+.++++.+++.-+..+.-|-. .+=++|+-.
T Consensus 174 e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~ 253 (1266)
T KOG1525|consen 174 EEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIA 253 (1266)
T ss_pred hhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhh
Confidence 7777543332333444444333332221111111 111222211
Q ss_pred hhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 001368 138 GRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAF 217 (1091)
Q Consensus 138 G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l 217 (1091)
-..+.+-.|. +--.+.+....+|-.+..+++.++.--+.-.. ..|.++|+. +=...+|++.+||.++.+|....
T Consensus 254 p~ll~~vip~----l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~-fl~r~~D~~~~vR~~~v~~~~~~ 327 (1266)
T KOG1525|consen 254 PQLLLAVIPQ----LEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSA-FLGRFNDISVEVRMECVESIKQC 327 (1266)
T ss_pred HHHHHHHHHH----HHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHH-HHHHhccCChhhhhhHHHHhHHH
Confidence 1111111111 11122234578999999999999986664443 458899995 44458999999999998887765
Q ss_pred Hhh
Q 001368 218 AHI 220 (1091)
Q Consensus 218 ~~~ 220 (1091)
+..
T Consensus 328 l~~ 330 (1266)
T KOG1525|consen 328 LLN 330 (1266)
T ss_pred Hhc
Confidence 554
No 77
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=83.29 E-value=2 Score=33.85 Aligned_cols=30 Identities=27% Similarity=0.136 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001368 419 EVLDSTVVAAVSHSSQLVRIEAALTLRALA 448 (1091)
Q Consensus 419 ~~l~d~l~~ll~hps~svRi~AA~cLr~~~ 448 (1091)
.+....|+++|.|++..||-+|+|+|+.++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 357889999999999999999999999886
No 78
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=82.95 E-value=77 Score=39.38 Aligned_cols=177 Identities=12% Similarity=0.098 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcc
Q 001368 124 AGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKS 203 (1091)
Q Consensus 124 ~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks 203 (1091)
.|++..+|.|-+..-.++...+++++..+.+.|=..|+.+|-+...++-++.+ ..++.-.-.+++. .=.|++|-+
T Consensus 272 ~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s----vidN~dI~~~ip~-Lld~l~dp~ 346 (569)
T KOG1242|consen 272 MASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS----VIDNPDIQKIIPT-LLDALADPS 346 (569)
T ss_pred HHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH----hhccHHHHHHHHH-HHHHhcCcc
Confidence 48999999999999999999999999999999999999999999999888655 3444445555554 333688865
Q ss_pred hHHHHHHHHHHHHHHhhcCCCc---ccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCC
Q 001368 204 FVVRIAGARCLKAFAHIGGPCL---GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPP 280 (1091)
Q Consensus 204 ~~Vr~aAa~cL~~l~~~~~~~~---~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~ 280 (1091)
-.| -+|+..|...+ |. ....++-++.+.-+.+...+..+++.++.-++......-.|+.....-++ -
T Consensus 347 ~~~----~e~~~~L~~tt--FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~----L 416 (569)
T KOG1242|consen 347 CYT----PECLDSLGATT--FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS----L 416 (569)
T ss_pred cch----HHHHHhhccee--eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH----H
Confidence 333 36888888864 65 56778889999999999999999999999999987554333210000000 0
Q ss_pred CCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccC
Q 001368 281 AKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYF 327 (1091)
Q Consensus 281 ~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~l 327 (1091)
...++.++. . .-.++|.=.+.||...+..+|....
T Consensus 417 lp~lk~~~~--------d----~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 417 LPGLKENLD--------D----AVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred hhHHHHHhc--------C----CChhHHHHHHHHHHHHHHHHHhhcc
Confidence 001111111 1 1378888888899999999887655
No 79
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=81.63 E-value=52 Score=42.26 Aligned_cols=94 Identities=16% Similarity=0.019 Sum_probs=71.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCcchHHHHHH------------------HhhcccccCCcchhHHHHHHHHHHHhhcCCcc
Q 001368 819 LGSEVLNSIQAIFLSILAEGDICASQRRAL------------------LLGDLTVVTDANYAGSIALAIGCIHRSAGGMA 880 (1091)
Q Consensus 819 l~~~v~~~~~~li~~~l~~~d~~~~~r~aa------------------~l~~lv~~~dp~~Ra~~aLALG~I~r~vGgma 880 (1091)
+.++-..+....+++=+.++|+ ..|+.| .+.+.++.++|+.|-..|+|++.+|+.-.-|-
T Consensus 85 ~~P~~~lLavNti~kDl~d~N~--~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~ 162 (757)
T COG5096 85 LKPELALLAVNTIQKDLQDPNE--EIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLY 162 (757)
T ss_pred cCHHHHHHHHHHHHhhccCCCH--HHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhh
Confidence 4556666667777777777776 478887 22334567899999999999999998776552
Q ss_pred cccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 001368 881 LSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEA 917 (1091)
Q Consensus 881 s~~~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~ds 917 (1091)
|=..-..++..|+.|+.|+|=.-||++|..+=+-
T Consensus 163 ---~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 163 ---HELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ---hcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 2222567788889999999999999999977665
No 80
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.63 E-value=51 Score=41.56 Aligned_cols=165 Identities=13% Similarity=0.067 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCC-hHhHHHHHHHHHHHHHHHhhH--HhhcHHHHHHHHHHHhc
Q 001368 81 VRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSE-PQKVAGAAQCLGELYRQFGRR--ITSGLLETTIIAAKLMK 157 (1091)
Q Consensus 81 ~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~s-p~~~~aA~~cLG~l~~~~G~~--l~s~~~e~~~~llK~lK 157 (1091)
.+++.++.+-..+..|=.. +=+-.++.++--+|..+ |.+. +.-+...++.+-.. =.-+..-++..++|...
T Consensus 22 ~~kl~~k~~em~t~~~F~e---eflr~vn~il~vkKresi~dRI---l~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~E 95 (892)
T KOG2025|consen 22 YSKLLAKVMEMLTAHEFSE---EFLRVVNYILLVKKRESIPDRI---LSFLARFVESLPQLDKEEDLVAGTFYHLLRGTE 95 (892)
T ss_pred HHHHHHHHHHhhhHhhhHH---HHHHHHHHheeeccCCCcHHHH---HHHHHHHHHhhhccCchhhHHHHHHHHHHhccc
Confidence 5777766666655543221 22223343554344433 3322 22233333333211 00123334445555555
Q ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHH
Q 001368 158 FNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHC 237 (1091)
Q Consensus 158 ~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~ 237 (1091)
++.-.+|.-.++.+++++...+ -.|+.++-.+.+. +..=+-||...||.-|..||..+...+ ...+.+-.-.+.
T Consensus 96 skdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~-l~~Rl~Drep~VRiqAv~aLsrlQ~d~----~dee~~v~n~l~ 169 (892)
T KOG2025|consen 96 SKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEK-LLIRLKDREPNVRIQAVLALSRLQGDP----KDEECPVVNLLK 169 (892)
T ss_pred CcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHH-HHHHHhccCchHHHHHHHHHHHHhcCC----CCCcccHHHHHH
Confidence 5566899999999999988555 4567888888774 555588999999999999998887532 223344344444
Q ss_pred HHhccCCChhHHHHHHHHHH
Q 001368 238 VKAIEDPIASVRDAFAEALG 257 (1091)
Q Consensus 238 ~K~le~s~~~vR~a~A~~Lg 257 (1091)
+=.=.+|+++||+++=.+++
T Consensus 170 ~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 170 DLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHHhcCCcHHHHHHHHHhhc
Confidence 44456799999998755543
No 81
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=81.25 E-value=28 Score=42.15 Aligned_cols=254 Identities=17% Similarity=0.167 Sum_probs=144.3
Q ss_pred ccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhc-CCc-ch-hHHhHHHHHHhhhc-CC-CCChHhHHH
Q 001368 51 DEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISK-GDN-IS-VYSRVSSLQGFLSD-GK-KSEPQKVAG 125 (1091)
Q Consensus 51 ~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~-GD~-~~-lfdtvn~l~~iL~~-~K-~~sp~~~~a 125 (1091)
+..+|+|+..+.+.+-+.|++++..... ..=.-+-||+-+++.. +|. .+ .-..++.|..+++. .| .+.|.--|=
T Consensus 13 ~~~~~~di~p~~~~ll~~Lf~~i~~~~s-~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHy 91 (435)
T PF03378_consen 13 PRFSKADIQPFAQQLLQNLFALIEKPGS-AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHY 91 (435)
T ss_dssp BSS-GGGTTCCHHHHHHHHHHHHHTT-S-TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHH
T ss_pred eeECHHHhhhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhh
Confidence 4578999999999999999999976433 3344589999999886 222 22 33445566666652 23 334554466
Q ss_pred HHHHHHHHHHHHhh---HHhhcHHHH-HHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccC
Q 001368 126 AAQCLGELYRQFGR---RITSGLLET-TIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVD 201 (1091)
Q Consensus 126 A~~cLG~l~~~~G~---~l~s~~~e~-~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~D 201 (1091)
-.+++|.+.+.... ...+.+++. ...+...+.+.-..+--.+++.|+-+++.-.++.-+..|+.++.....-.+=+
T Consensus 92 lFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe 171 (435)
T PF03378_consen 92 LFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWE 171 (435)
T ss_dssp HHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGG
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhc
Confidence 77777777765332 222333333 33444444444334556789999999996662333557888888755555555
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCC
Q 001368 202 KSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPP 280 (1091)
Q Consensus 202 ks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~ 280 (1091)
+.-.| =|..+.|.+..+.++.++ ..+.++.+..++=|.+.+...+ +..-++|..++ ... |.
T Consensus 172 ~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv-~~~-p~------------- 233 (435)
T PF03378_consen 172 RRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIV-ENL-PP------------- 233 (435)
T ss_dssp STTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHH-HHS--H-------------
T ss_pred cCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHH-HHC-CH-------------
Confidence 55555 466778989888876666 5678999999999999887644 34446777766 222 21
Q ss_pred CCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcc
Q 001368 281 AKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRL 324 (1091)
Q Consensus 281 ~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~ 324 (1091)
..++.-+..++..-|.|-+++.+.+.+-.+...+..|....|.
T Consensus 234 -~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~ 276 (435)
T PF03378_consen 234 -EALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGP 276 (435)
T ss_dssp -HHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-H
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCH
Confidence 0223333334444454544233444444555555555445554
No 82
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=80.97 E-value=26 Score=36.60 Aligned_cols=81 Identities=10% Similarity=0.093 Sum_probs=67.3
Q ss_pred ccCCcchhHHHHHHHHHHHhhcCCcc------cccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchhh
Q 001368 855 VVTDANYAGSIALAIGCIHRSAGGMA------LSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQA 928 (1091)
Q Consensus 855 ~~~dp~~Ra~~aLALG~I~r~vGgma------s~~~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~s 928 (1091)
...++.....+.-+|+.|+.+++|.- +.+++++++.-++.+.+| +.+--=+|++|..++......|+||...
T Consensus 78 ~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~k 155 (165)
T PF08167_consen 78 KPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANK 155 (165)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHH
Confidence 44566778889999999999999974 367899999999999998 6666789999999999999999999877
Q ss_pred hHHHHHHHh
Q 001368 929 TLGLAMEIL 937 (1091)
Q Consensus 929 tL~ll~~ll 937 (1091)
.=.++..++
T Consensus 156 i~~~l~~ll 164 (165)
T PF08167_consen 156 IESALLSLL 164 (165)
T ss_pred HHHHHHHHh
Confidence 666665543
No 83
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=80.93 E-value=4.9 Score=39.81 Aligned_cols=72 Identities=22% Similarity=0.182 Sum_probs=51.5
Q ss_pred HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhh-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 001368 377 SFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEF-KEVLDSTVVAAVSHSSQLVRIEAALTLRALAE 449 (1091)
Q Consensus 377 ~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~-~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~ 449 (1091)
++++.|++.+...+ ++.++.+|+.-||.+++..-..-.-+ .-+.++.+++++.||+..||.+|-.|+..+..
T Consensus 43 ~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45555555443222 55678899999999999874432222 34689999999999999999999999988764
No 84
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.56 E-value=33 Score=43.01 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=100.8
Q ss_pred HHHHHHHHHHH---------HHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 001368 124 AGAAQCLGELY---------RQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLI 194 (1091)
Q Consensus 124 ~aA~~cLG~l~---------~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~ 194 (1091)
..|++.+=+.| +.+.+.+-.+|.+ +.+++...-+-+|..+...+.|+..--=--+++++.+|+.|.+
T Consensus 192 snAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~----l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI 267 (1005)
T KOG1949|consen 192 SNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEE----LYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKI 267 (1005)
T ss_pred hhHHHHHHHhccCCCCCccHHHHHHHHHHHHHH----HHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 46778877777 4455555555555 7778887777899999999999877555556788999999998
Q ss_pred HHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 195 MRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 195 ~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
.-....|.+..||++..+|+..+...- ..-+-||-+....=-++.+.+..||-|+-+.|-.+=
T Consensus 268 ~d~~a~dt~s~VR~svf~gl~~~l~np---~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 268 TDELAFDTSSDVRCSVFKGLPMILDNP---LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHhhhccchheehhHhcCcHHHHcCc---cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 888888999999999999998887652 233456666666666778899999999999887764
No 85
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.47 E-value=1.3e+02 Score=38.16 Aligned_cols=117 Identities=11% Similarity=0.107 Sum_probs=80.9
Q ss_pred ChHHHHHHHHHHHHHHhcCCcch-H-----HHH------HH-Hhhcc---cccCCcchhHHHHHHHHHHHhhcCCccccc
Q 001368 820 GSEVLNSIQAIFLSILAEGDICA-S-----QRR------AL-LLGDL---TVVTDANYAGSIALAIGCIHRSAGGMALSS 883 (1091)
Q Consensus 820 ~~~v~~~~~~li~~~l~~~d~~~-~-----~r~------aa-~l~~l---v~~~dp~~Ra~~aLALG~I~r~vGgmas~~ 883 (1091)
+.+|.-++..++++.+.+++.|- + +-| |. +-.|+ ....-|+.|--..+.|=.+|-.-.-
T Consensus 103 ~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe----- 177 (877)
T KOG1059|consen 103 DTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE----- 177 (877)
T ss_pred CccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-----
Confidence 56788888888888888777651 1 000 00 11222 2457799999888888887754442
Q ss_pred chhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHhccCCCCCc
Q 001368 884 LVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWV 945 (1091)
Q Consensus 884 ~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~ 945 (1091)
.++.++-=|-.=..||.|.|+.-|..-.+-++-.....|-+..+ .+++++.+.++|++
T Consensus 178 Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP----~ffkllttSsNNWm 235 (877)
T KOG1059|consen 178 ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAP----LFYKLLVTSSNNWV 235 (877)
T ss_pred hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccH----HHHHHHhccCCCee
Confidence 26777777888888999999998888777777776667777544 45677777777764
No 86
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=79.56 E-value=36 Score=45.11 Aligned_cols=212 Identities=14% Similarity=0.144 Sum_probs=147.3
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcC----
Q 001368 40 FDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDG---- 115 (1091)
Q Consensus 40 f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~---- 115 (1091)
++-|..+-..+...++.|..-.+-++---|..++..+..--+|=..|.|++.|=...-+|..+..--.+++++++-
T Consensus 483 l~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset 562 (1431)
T KOG1240|consen 483 LETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSET 562 (1431)
T ss_pred HHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence 4445566666777788888888888888888888887777789999999999977777777776666666566520
Q ss_pred C-------------------------CCChH-hHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHH
Q 001368 116 K-------------------------KSEPQ-KVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALL 169 (1091)
Q Consensus 116 K-------------------------~~sp~-~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~ 169 (1091)
+ |.+|- |+ +-+.-++.++.=||+.=.+=. +.+.+.-.|-..+-.+|.+-+.
T Consensus 563 ~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr-~Lle~i~~LC~FFGk~ksND~--iLshLiTfLNDkDw~LR~aFfd 639 (1431)
T KOG1240|consen 563 APEQNYNTELQALHHTVEQMVSSLLSDSPPIVKR-ALLESIIPLCVFFGKEKSNDV--ILSHLITFLNDKDWRLRGAFFD 639 (1431)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHcCCchHHHH-HHHHHHHHHHHHhhhcccccc--hHHHHHHHhcCccHHHHHHHHh
Confidence 1 11222 44 678888999998988754433 3444555554457889998887
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHH
Q 001368 170 LLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVR 249 (1091)
Q Consensus 170 ~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR 249 (1091)
.+.-+.--+|.-. ..++.+=-+-.+++|..-.|-..|.+|+.-|.+.+ ++..--+-.+.....=.+-.+|.-+|
T Consensus 640 sI~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v~PlL~hPN~WIR 713 (1431)
T KOG1240|consen 640 SIVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDVLPLLCHPNLWIR 713 (1431)
T ss_pred hccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhhhhheeCchHHHH
Confidence 7766555566332 23333334455899999999999999999999875 44333333344555556677999999
Q ss_pred HHHHHHHHHHH
Q 001368 250 DAFAEALGSLL 260 (1091)
Q Consensus 250 ~a~A~~Lg~lL 260 (1091)
+++-.-++++.
T Consensus 714 ~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 714 RAVLGIIAAIA 724 (1431)
T ss_pred HHHHHHHHHHH
Confidence 99887777654
No 87
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=79.55 E-value=1.6e+02 Score=36.80 Aligned_cols=113 Identities=14% Similarity=0.161 Sum_probs=64.3
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHh
Q 001368 43 LSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQK 122 (1091)
Q Consensus 43 L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~ 122 (1091)
...|.+.+..++.+++.+-=+++.. . + .-.|+++=.+++.. |... .+..+.+.|+.+| -++..
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~-~-------~-~~~r~~~~Dal~~~---GT~~----a~~~i~~~i~~~~-~~~~e 375 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE-K-------K-KKARRIFLDAVAQA---GTPP----ALKFIKQWIKNKK-ITPLE 375 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh-C-------C-HHHHHHHHHHHHhc---CCHH----HHHHHHHHHHcCC-CCHHH
Confidence 3456777788888887766554432 1 0 33466655554443 4443 4556666676333 23322
Q ss_pred HHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHHhcCC
Q 001368 123 VAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF----NEEFVRQEALLLLQNALEGSG 179 (1091)
Q Consensus 123 ~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~----~~a~~R~~~l~~L~kil~g~g 179 (1091)
. . +++......+..--++++..++.++|+ ++..+|..++.++..++...-
T Consensus 376 a---~----~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c 429 (574)
T smart00638 376 A---A----QLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYC 429 (574)
T ss_pred H---H----HHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHh
Confidence 1 1 223333335555567777777777775 466778788877777776443
No 88
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=79.22 E-value=9.6 Score=36.04 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=59.0
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 189 EAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 189 di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
+.|+.+++. ++|...|||..+..-|..|+... . ....+.+.+..++...++++++-|=.++-++|+++.
T Consensus 3 ~~~~~al~~-L~dp~~PvRa~gL~~L~~Li~~~-~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La 71 (92)
T PF10363_consen 3 ETLQEALSD-LNDPLPPVRAHGLVLLRKLIESK-S-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALA 71 (92)
T ss_pred HHHHHHHHH-ccCCCcchHHHHHHHHHHHHHcC-C-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 455554444 78999999999999999999985 3 555678899999999999999999999999999987
No 89
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=78.87 E-value=1.1e+02 Score=37.06 Aligned_cols=153 Identities=16% Similarity=0.053 Sum_probs=105.3
Q ss_pred CcchhHH-----hHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 001368 97 DNISVYS-----RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLL 171 (1091)
Q Consensus 97 D~~~lfd-----tvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L 171 (1091)
+++++|+ -...+..+|++.++ +..|. -|+-+|++|-+.--..+....+.++.-.+-.-|..+..+...+-...
T Consensus 318 ~sfsvWeq~f~~iL~~l~EvL~d~~~-~~~k~-laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~ 395 (516)
T KOG2956|consen 318 GSFSVWEQHFAEILLLLLEVLSDSED-EIIKK-LALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDC 395 (516)
T ss_pred cchhHHHHHHHHHHHHHHHHHccchh-hHHHH-HHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 4566665 12345556653333 22333 59999999999999999888888888777778888888777777776
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC-cccchhhhHHHHHHHhccCCChhHHH
Q 001368 172 QNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC-LGVGELDNSATHCVKAIEDPIASVRD 250 (1091)
Q Consensus 172 ~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~-~~~~dlE~l~tl~~K~le~s~~~vR~ 250 (1091)
-.++...- +.....-|-+. .++ -+.+.-.++.+|+..++..- +- --..=++.+....+++.++.+..||.
T Consensus 396 ~~~las~~---P~~~I~~i~~~----Ilt-~D~~~~~~~iKm~Tkl~e~l-~~EeL~~ll~diaP~~iqay~S~SS~VRK 466 (516)
T KOG2956|consen 396 LTTLASHL---PLQCIVNISPL----ILT-ADEPRAVAVIKMLTKLFERL-SAEELLNLLPDIAPCVIQAYDSTSSTVRK 466 (516)
T ss_pred HHHHHhhC---chhHHHHHhhH----Hhc-CcchHHHHHHHHHHHHHhhc-CHHHHHHhhhhhhhHHHHHhcCchHHhhh
Confidence 66666332 23444444443 333 56677778899999998752 00 01122456788899999999999999
Q ss_pred HHHHHHHHHH
Q 001368 251 AFAEALGSLL 260 (1091)
Q Consensus 251 a~A~~Lg~lL 260 (1091)
.+-=||-++.
T Consensus 467 taVfCLVamv 476 (516)
T KOG2956|consen 467 TAVFCLVAMV 476 (516)
T ss_pred hHHHhHHHHH
Confidence 9999988776
No 90
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=78.22 E-value=19 Score=35.78 Aligned_cols=128 Identities=17% Similarity=0.164 Sum_probs=77.2
Q ss_pred CchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhh----------------HH
Q 001368 78 RRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGR----------------RI 141 (1091)
Q Consensus 78 g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~----------------~l 141 (1091)
|+.+|+=++.|++.++.+-=+-.--+-++++...++ . +|......+.+|..+-|.+++ .+
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~---~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l 76 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQ---S-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDAL 76 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHH---T-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhc---c-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHH
Confidence 456799999999999987411111123335666555 2 355444678888888887775 14
Q ss_pred hhcHHHHHHHHHHHhccCc----HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 001368 142 TSGLLETTIIAAKLMKFNE----EFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCL 214 (1091)
Q Consensus 142 ~s~~~e~~~~llK~lK~~~----a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL 214 (1091)
...++..+..+.+.+..+. ......++.+++..++-+. ...-.-.++...+++. +++... +.+|++||
T Consensus 77 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~-l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 77 RSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQL-LQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHH-TTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHH-cCCHHH--HHHHHHhC
Confidence 4445666677777666532 6778888888888888333 1111112345544443 455444 88888886
No 91
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=77.63 E-value=8.5 Score=44.22 Aligned_cols=92 Identities=28% Similarity=0.237 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc
Q 001368 146 LETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL 225 (1091)
Q Consensus 146 ~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~ 225 (1091)
++++..+.+.++..+..+|..+...+.. .| ++.....+.+ .+.|.+..||..|+.+|..+-..
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~----~~---~~~av~~l~~-----~l~d~~~~vr~~a~~aLg~~~~~----- 104 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGE----LG---SEEAVPLLRE-----LLSDEDPRVRDAAADALGELGDP----- 104 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhh----hc---hHHHHHHHHH-----HhcCCCHHHHHHHHHHHHccCCh-----
Confidence 6788999999998888999998887433 33 3444555555 48899999999999977555433
Q ss_pred ccchhhhHHHHHHHhcc-CCChhHHHHHHHHHHHHH
Q 001368 226 GVGELDNSATHCVKAIE-DPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 226 ~~~dlE~l~tl~~K~le-~s~~~vR~a~A~~Lg~lL 260 (1091)
.......+.++ +.|..||..++..||.+-
T Consensus 105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 105 ------EAVPPLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 34555566666 799999999999999865
No 92
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=76.94 E-value=23 Score=36.86 Aligned_cols=110 Identities=14% Similarity=0.160 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhH--------------------------------------Hh
Q 001368 63 RKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVY--------------------------------------SR 104 (1091)
Q Consensus 63 ~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lf--------------------------------------dt 104 (1091)
..|-+.|++++.....+++|+-+-|||+.|-.. |++.-- -.
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL-DP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vv 87 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGAL-DPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVV 87 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc-CcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHH
Confidence 457788889998887788899999999877432 222111 12
Q ss_pred HHHHHHhhhcCCCCChHh-HHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHh
Q 001368 105 VSSLQGFLSDGKKSEPQK-VAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALE 176 (1091)
Q Consensus 105 vn~l~~iL~~~K~~sp~~-~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~ 176 (1091)
++.|..+|+ |.+-+. ..+++..+..+|++.|.+....++.++..+++.+++.++..|-..++-|+.++.
T Consensus 88 i~~L~~iL~---D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 88 INALMRILR---DPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHH---hhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 333333443 222221 236888889999999999999999999999999998777888888888887765
No 93
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=76.81 E-value=9 Score=38.02 Aligned_cols=72 Identities=31% Similarity=0.445 Sum_probs=48.2
Q ss_pred HHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHH--hhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHh
Q 001368 102 YSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQF--GRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALE 176 (1091)
Q Consensus 102 fdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~--G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~ 176 (1091)
|+-+..|.++|. +.++|...+-|++=||++.+.+ ||.+...+. .=..++++|....+.+|++||.+++|++.
T Consensus 42 ~~llk~L~~lL~--~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg-~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLD--KSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLG-AKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH---SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHS-HHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHc--cCCCcceeehhhcchHHHHHHChhHHHHHHhcC-hHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 556668888884 2226777767888899998866 444442222 23345556666778999999999999875
No 94
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=76.81 E-value=63 Score=39.05 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHhhcC
Q 001368 145 LLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVD-KSFVVRIAGARCLKAFAHIGG 222 (1091)
Q Consensus 145 ~~e~~~~llK~lK~-~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~D-ks~~Vr~aAa~cL~~l~~~~~ 222 (1091)
|.++...++-.+.. .+..-|..+++.|+++|+.-....-++.---|-|. ... ..| ..-.+|.|+-.|+.-+..+.
T Consensus 327 f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~-Lea-a~ds~~~v~~~Aeed~~~~las~~- 403 (516)
T KOG2956|consen 327 FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKV-LEA-AKDSQDEVMRVAEEDCLTTLASHL- 403 (516)
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHH-HHH-HhCCchhHHHHHHHHHHHHHHhhC-
Confidence 55666677777766 45678999999999999977655533334445553 443 345 44556667777888888875
Q ss_pred CCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhh---hhhccc
Q 001368 223 PCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLA---LPFTRA 299 (1091)
Q Consensus 223 ~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls---~~f~r~ 299 (1091)
| +.....+.+.+-+.|+..-.++=+++-.+.-. .+. |++..++. -.++++
T Consensus 404 P-------~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~-------------------l~~-EeL~~ll~diaP~~iqa 456 (516)
T KOG2956|consen 404 P-------LQCIVNISPLILTADEPRAVAVIKMLTKLFER-------------------LSA-EELLNLLPDIAPCVIQA 456 (516)
T ss_pred c-------hhHHHHHhhHHhcCcchHHHHHHHHHHHHHhh-------------------cCH-HHHHHhhhhhhhHHHHH
Confidence 4 22333333444557877777777777776611 122 33322333 335666
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccccCC
Q 001368 300 NGAKSKNMRVNLTLSWVYFLQAIRLKYFH 328 (1091)
Q Consensus 300 ~~~~~r~~R~Gv~~ayv~fl~~lg~~~le 328 (1091)
-++++..||=.+..|.|+++..+|..=+|
T Consensus 457 y~S~SS~VRKtaVfCLVamv~~vG~~~me 485 (516)
T KOG2956|consen 457 YDSTSSTVRKTAVFCLVAMVNRVGMEEME 485 (516)
T ss_pred hcCchHHhhhhHHHhHHHHHHHHhHHhhh
Confidence 66677899999999999999999954333
No 95
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=76.60 E-value=45 Score=37.52 Aligned_cols=157 Identities=24% Similarity=0.289 Sum_probs=92.6
Q ss_pred HHHHHHHHhhcCCC-chhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHH-HHhhHHh
Q 001368 65 CEDALYSLLILGAR-RPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYR-QFGRRIT 142 (1091)
Q Consensus 65 l~~~L~~~l~~~~g-~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~-~~G~~l~ 142 (1091)
-...|..+++.-.. |=+|+=+|.||..++ ++. ..+.+.++.+ +|.+- -.=+|.+++++ +-+..+.
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~---~~~----~~~~l~k~~~-----dp~~~-v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIG---DPE----SLEILTKYIK-----DPCKE-VRETCELAIKRLEWKDIID 134 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhc---chh----hHHHHHHHhc-----CCccc-cchHHHHHHHHHHHhhccc
Confidence 34556666665544 555999999999987 332 3445555543 22211 12235555544 2222222
Q ss_pred h-------------------cHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCc
Q 001368 143 S-------------------GLLETTIIAAKLMKFN-EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDK 202 (1091)
Q Consensus 143 s-------------------~~~e~~~~llK~lK~~-~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dk 202 (1091)
+ ...+.-.. +++.+ +-..||.+|..|+. .| . +....-|-+ .+.|.
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~---lld~t~~l~~Ry~amF~LRn----~g--~-EeaI~al~~-----~l~~~ 199 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAE---LLDETKPLFERYRAMFYLRN----IG--T-EEAINALID-----GLADD 199 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHH---HHhcchhHHHHHhhhhHhhc----cC--c-HHHHHHHHH-----hcccc
Confidence 1 12222222 22333 45689999988876 66 3 222333333 36677
Q ss_pred chHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccC--CChhHHHHHHHHHHHHH
Q 001368 203 SFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIED--PIASVRDAFAEALGSLL 260 (1091)
Q Consensus 203 s~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~--s~~~vR~a~A~~Lg~lL 260 (1091)
|...|--++-|+++|...+ -.....|.|++ .+.-|||-+|++||++.
T Consensus 200 SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 200 SALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred hHHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhc
Confidence 8899999999999888764 33444566665 66789999999999865
No 96
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.28 E-value=13 Score=45.38 Aligned_cols=194 Identities=13% Similarity=0.085 Sum_probs=123.9
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcC-CCCChHhHHHHHHHHHHHHHHHhhHHhh
Q 001368 65 CEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDG-KKSEPQKVAGAAQCLGELYRQFGRRITS 143 (1091)
Q Consensus 65 l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~-K~~sp~~~~aA~~cLG~l~~~~G~~l~s 143 (1091)
..+.|..+++..-+=...|.+.-+|..+....++-+=|+.+..+...|..- +.+++..+.-|+-.+. |-+-|..=..
T Consensus 195 ~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAls--yLsdg~ne~i 272 (514)
T KOG0166|consen 195 ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALS--YLTDGSNEKI 272 (514)
T ss_pred chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHhcCChHHH
Confidence 345666666666555679999999999999999999999999888887621 2445554422333333 2221211111
Q ss_pred c---HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHh
Q 001368 144 G---LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIV-DKSFVVRIAGARCLKAFAH 219 (1091)
Q Consensus 144 ~---~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~-Dks~~Vr~aAa~cL~~l~~ 219 (1091)
+ =...+.-+.+++...+..++.-++++++.|+.|...-...-+--.... .++..++ ...-.+|..||..+..+..
T Consensus 273 q~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~-~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 273 QMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALP-VLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred HHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHH-HHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 1 123566777888888888999999999998887663332222223344 3555555 3333477777776666544
Q ss_pred hcCCCcccchhh-hHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 001368 220 IGGPCLGVGELD-NSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 220 ~~~~~~~~~dlE-~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
.. +.--..=+| ++.......++.+++.+|..+|-+++++.+.
T Consensus 352 G~-~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 352 GN-QEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred CC-HHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 32 100000111 5677888999999999999999999987743
No 97
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.73 E-value=80 Score=39.99 Aligned_cols=127 Identities=19% Similarity=0.125 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchH
Q 001368 126 AAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFV 205 (1091)
Q Consensus 126 A~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~ 205 (1091)
.+..|.-+...-|..=-..|....-.+++-+|.-++.+|.+|..+|.+.=..-+ .++.=..-+||...+ +|.+..
T Consensus 105 vlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~--dee~~v~n~l~~liq---nDpS~E 179 (892)
T KOG2025|consen 105 VLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK--DEECPVVNLLKDLIQ---NDPSDE 179 (892)
T ss_pred HHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC--CCcccHHHHHHHHHh---cCCcHH
Confidence 555555544433322223344444456666777899999999999999654322 245556777776443 699999
Q ss_pred HHHHHHHHHHHHHhhcCCCc--ccch-----------------------hhhHHHHHHHhccCCChhHHHHHHHHHHH
Q 001368 206 VRIAGARCLKAFAHIGGPCL--GVGE-----------------------LDNSATHCVKAIEDPIASVRDAFAEALGS 258 (1091)
Q Consensus 206 Vr~aAa~cL~~l~~~~~~~~--~~~d-----------------------lE~l~tl~~K~le~s~~~vR~a~A~~Lg~ 258 (1091)
||+||.-|+. .-+.|.|++ ..-| +|.-.-+.=+++++-+..||.|.+++++.
T Consensus 180 VRRaaLsnI~-vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 180 VRRAALSNIS-VDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred HHHHHHHhhc-cCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 9999987762 222233443 2222 33334444455666666666666666554
No 98
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.60 E-value=60 Score=40.89 Aligned_cols=183 Identities=19% Similarity=0.149 Sum_probs=117.5
Q ss_pred HHHHHHHHhhc-------CCCchhhHHHHHHHHHHhhcCCcchhHHh--------HHHHHHhhhcCCCCChHhHHHHHHH
Q 001368 65 CEDALYSLLIL-------GARRPVRHLASVAMGRIISKGDNISVYSR--------VSSLQGFLSDGKKSEPQKVAGAAQC 129 (1091)
Q Consensus 65 l~~~L~~~l~~-------~~g~P~R~l~a~cla~l~~~GD~~~lfdt--------vn~l~~iL~~~K~~sp~~~~aA~~c 129 (1091)
.++.|+.+.++ .+-.-+|-+++.-|...|-.-|+-.=-+. -..+-++|. |+-|..+.-|+.-
T Consensus 167 Veeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~---d~~p~VRS~a~~g 243 (1005)
T KOG1949|consen 167 VEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLE---DPYPMVRSTAILG 243 (1005)
T ss_pred HHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhc---CCCchHHHHHHHH
Confidence 56667777662 36677799999999999998777541111 124555665 6678777666666
Q ss_pred HHHHHHHHhhHHhhcHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccC
Q 001368 130 LGELYRQFGRRITSGLLETTIIAAKLMKF--------NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVD 201 (1091)
Q Consensus 130 LG~l~~~~G~~l~s~~~e~~~~llK~lK~--------~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~D 201 (1091)
+-.++..|=.+|-+ +++.++||. .-+-+|++.+..|.-++.+ ...-.+.+-+.+ +.++++.|
T Consensus 244 v~k~~s~fWe~iP~------~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~~Lp-al~~~l~D 313 (1005)
T KOG1949|consen 244 VCKITSKFWEMIPP------TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQLLP-ALRYSLHD 313 (1005)
T ss_pred HHHHHHHHHHHcCH------HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHHHHH-hcchhhhc
Confidence 66666666555521 334455554 3467999999999988763 233457788888 79999999
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCC
Q 001368 202 KSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQ 267 (1091)
Q Consensus 202 ks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~ 267 (1091)
++-.||.|+-+-+..+-..-+..+| ++=....+. -.+|..+-+| ++-++.++...+-|-
T Consensus 314 ~se~VRvA~vd~ll~ik~vra~~f~--~I~~~d~~l-~~L~~d~~~v----~rr~~~li~~s~lP~ 372 (1005)
T KOG1949|consen 314 NSEKVRVAFVDMLLKIKAVRAAKFW--KICPMDHIL-VRLETDSRPV----SRRLVSLIFNSFLPV 372 (1005)
T ss_pred cchhHHHHHHHHHHHHHhhhhhhhh--ccccHHHHH-HHHhccccHH----HHHHHHHHHHhhcCC
Confidence 9999999999988777665311122 111122222 2355555443 444556666666654
No 99
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=75.57 E-value=54 Score=40.88 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcc
Q 001368 124 AGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF---NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIV 200 (1091)
Q Consensus 124 ~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~---~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~ 200 (1091)
..++..|| .+| .+.++..+.+.+.. .+..+|..++.+|.++....- ..+..-+++ +++. .
T Consensus 464 ~~~LkaLG--------N~g--~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p----~~v~~~l~~-i~~n--~ 526 (574)
T smart00638 464 QLYLKALG--------NAG--HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP----RKVQEVLLP-IYLN--R 526 (574)
T ss_pred eeHHHhhh--------ccC--ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc----hHHHHHHHH-HHcC--C
Confidence 36777777 443 46677777777763 456799999999998765322 333333344 3321 3
Q ss_pred CcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHH
Q 001368 201 DKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEA 255 (1091)
Q Consensus 201 Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~ 255 (1091)
+....||+||.-.| .... .+.+.+..+.-..-.++|.+|+..+-..
T Consensus 527 ~e~~EvRiaA~~~l---m~t~------P~~~~l~~ia~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 527 AEPPEVRMAAVLVL---METK------PSVALLQRIAELLNKEPNLQVASFVYSH 572 (574)
T ss_pred CCChHHHHHHHHHH---HhcC------CCHHHHHHHHHHHhhcCcHHHHHHhHHh
Confidence 47788999997544 2221 1223344444444457888898876544
No 100
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.45 E-value=84 Score=38.94 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=92.4
Q ss_pred hhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCC-hHhHHHHHHHHHHHHH-HHhhH-H-hhcHHHHHHHHHHH
Q 001368 80 PVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSE-PQKVAGAAQCLGELYR-QFGRR-I-TSGLLETTIIAAKL 155 (1091)
Q Consensus 80 P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~s-p~~~~aA~~cLG~l~~-~~G~~-l-~s~~~e~~~~llK~ 155 (1091)
--|+.++.-+--.|..|=..-.-. .++.||.=+|..+ |.+. +.-|...|+ .+-+. = ..+..-++-.++|.
T Consensus 26 Ghrk~~a~l~~~~t~~~f~~~flr---~vn~IL~~Kk~~si~dRi---l~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg 99 (885)
T COG5218 26 GHRKSLAELMEMLTAHEFSEEFLR---VVNTILACKKNPSIPDRI---LSFLKRFFEYDMPDDPEGEELVAGTFYHLLRG 99 (885)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHH---HHHHhhccccCCCcHHHH---HHHHHHHHHhcCCCChhhhHHHHHHHHHHHhc
Confidence 348888888888877765543333 4455554344333 4332 223333333 11111 1 12233344444555
Q ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHH
Q 001368 156 MKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSAT 235 (1091)
Q Consensus 156 lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~t 235 (1091)
..+..-.+|+-.++.|+-+...+| -+|+..+--.... ...-+-||...||.-|..||..+..-+ .+=|+-..
T Consensus 100 ~eskdk~VR~r~lqila~~~d~v~-eIDe~l~N~L~ek-l~~R~~DRE~~VR~eAv~~L~~~Qe~~------~neen~~~ 171 (885)
T COG5218 100 TESKDKKVRKRSLQILALLSDVVR-EIDEVLANGLLEK-LSERLFDREKAVRREAVKVLCYYQEME------LNEENRIV 171 (885)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHhcc------CChHHHHH
Confidence 555566899999999999988887 4455544433322 233367999999999999997776432 22233332
Q ss_pred HHHHh--ccCCChhHHHHH
Q 001368 236 HCVKA--IEDPIASVRDAF 252 (1091)
Q Consensus 236 l~~K~--le~s~~~vR~a~ 252 (1091)
-.+|+ -.+|+++||+++
T Consensus 172 n~l~~~vqnDPS~EVRr~a 190 (885)
T COG5218 172 NLLKDIVQNDPSDEVRRLA 190 (885)
T ss_pred HHHHHHHhcCcHHHHHHHH
Confidence 24444 356899999965
No 101
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.54 E-value=61 Score=41.77 Aligned_cols=142 Identities=16% Similarity=0.196 Sum_probs=104.7
Q ss_pred CCchhhHHHHHHHHHHhh-cCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHH
Q 001368 77 ARRPVRHLASVAMGRIIS-KGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKL 155 (1091)
Q Consensus 77 ~g~P~R~l~a~cla~l~~-~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~ 155 (1091)
+.+-.|-.+|..+.++-. .||=..=|-. --.+.++++-.+.+-.-|+.++..+|.+....-+.+++.+-|.+..++-.
T Consensus 818 ~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l 896 (982)
T KOG4653|consen 818 LQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSL 896 (982)
T ss_pred CCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 445568889988888776 4765444432 23344444222322334678999999999999999999999999999999
Q ss_pred hcc-CcHHHHHHHHHHHHHHHhcCCCCCch---hHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHhh
Q 001368 156 MKF-NEEFVRQEALLLLQNALEGSGGSAAA---SAYSEAFRLIMRFAIV-DKSFVVRIAGARCLKAFAHI 220 (1091)
Q Consensus 156 lK~-~~a~~R~~~l~~L~kil~g~g~~~~~---~~~~di~K~~~r~~~~-Dks~~Vr~aAa~cL~~l~~~ 220 (1091)
.+. .+..+|.+|...+.-.+.|+|.-+-+ ....|.++. .++... |..=.++..|+.|+.++...
T Consensus 897 ~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~t-l~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 897 ETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDET-LLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred HccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH-HHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 987 57889999999999999999965522 246688886 555444 47778999999999777653
No 102
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=72.91 E-value=26 Score=33.95 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=53.8
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHH
Q 001368 159 NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHC 237 (1091)
Q Consensus 159 ~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~ 237 (1091)
.+..-|..++++++.+++ +|++.-..+.-.|-- ..++++..+ ..|..|++||..+++.- ...|++.+....
T Consensus 27 ~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a-~L~sal~~~--~l~~~al~~W~~fi~~L----~~~~l~~ll~~~ 97 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIK-LGGSHISSARPQIMA-CLQSALEIP--ELREEALSCWNCFIKTL----DEEDLGPLLDQI 97 (107)
T ss_pred CCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH-HHHHHhCCh--hhHHHHHHHHHHHHHHC----CHHHHHHHHHHH
Confidence 567789999999999999 444443666777777 689888777 89999999999998863 346666554443
No 103
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.61 E-value=27 Score=39.95 Aligned_cols=118 Identities=13% Similarity=0.122 Sum_probs=71.6
Q ss_pred HHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHH
Q 001368 87 VAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQE 166 (1091)
Q Consensus 87 ~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~ 166 (1091)
|||+.-....=--.|-+++-.+.+-++ ++. |.-.+ +|+.|++++|..++..+-......+..+++---.....+|..
T Consensus 113 rrLs~fh~e~l~~~L~~vii~vvkslK-NlR-S~Vsr-aA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvred 189 (334)
T KOG2933|consen 113 RRLSEFHPESLNPMLHEVIIAVVKSLK-NLR-SAVSR-AACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVRED 189 (334)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhc-ChH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Confidence 344443333222234444444444443 222 33355 799999999999999998855555544443222246789999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 001368 167 ALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLK 215 (1091)
Q Consensus 167 ~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~ 215 (1091)
+-.+|.+++...-. ..+.+.+. .+...+...||.-++.|.-
T Consensus 190 a~kAL~aMV~~vtp---~~~L~~L~-----~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 190 AEKALVAMVNHVTP---QKLLRKLI-----PILQHSNPRVRAKAALCFS 230 (334)
T ss_pred HHHHHHHHHhccCh---HHHHHHHH-----HHHhhhchhhhhhhhcccc
Confidence 99999999885541 22233322 2355667778888888863
No 104
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=72.32 E-value=42 Score=35.85 Aligned_cols=170 Identities=16% Similarity=0.144 Sum_probs=105.5
Q ss_pred HHHHHHHhhhccCCCCchHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcc
Q 001368 20 AQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNI 99 (1091)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~ 99 (1091)
+-|..+-+=+...+||.. .=-|-.++ |.. -...+.-...|+.+|..-|-+=+|-..+..++.++... +
T Consensus 5 ~Al~~L~al~k~~~~r~l-~~yW~~ll----P~~-----~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs--k 72 (182)
T PF13251_consen 5 AALQCLQALAKSTDKRSL-FGYWPALL----PDS-----VLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS--K 72 (182)
T ss_pred HHHHHHHHHHHhcCCcee-HhhHHHHC----CCC-----CCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc--H
Confidence 334455333344466644 33455544 333 11112233467778888888889999999999999874 2
Q ss_pred hhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcC
Q 001368 100 SVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGS 178 (1091)
Q Consensus 100 ~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~-~~a~~R~~~l~~L~kil~g~ 178 (1091)
.-+..+++.. +|..+ . ..+-.++|+++...+.- ++..+.. ++......+++++...+.+.
T Consensus 73 ~~L~~Ae~~~-----~~~~s---F-------tslS~tLa~~i~~lH~~----Ll~~L~~E~~~~~l~q~lK~la~Lv~~t 133 (182)
T PF13251_consen 73 PFLAQAEESK-----GPSGS---F-------TSLSSTLASMIMELHRG----LLLALQAEKSPPVLTQLLKCLAVLVQAT 133 (182)
T ss_pred HHHHHHHhcC-----CCCCC---c-------ccHHHHHHHHHHHHHHH----HHHHHhcccccHHHHHHHHHHHHHHccC
Confidence 2222222111 11111 1 23445666666666654 3333333 45677789999999888765
Q ss_pred CC-CCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q 001368 179 GG-SAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 179 g~-~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
-= ........++++. .|.-+.+++..||.++.-|+..+....
T Consensus 134 PY~rL~~~ll~~~v~~-v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 134 PYHRLPPGLLTEVVTQ-VRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred ChhhcCHhHHHHHHHH-HHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 51 2256788889985 676678899999999999999988754
No 105
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=70.38 E-value=4.3e+02 Score=36.67 Aligned_cols=124 Identities=19% Similarity=0.115 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHH
Q 001368 128 QCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVR 207 (1091)
Q Consensus 128 ~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr 207 (1091)
.++...|-.+-|....+|--.+..++..+..+-..+|+-||++|+.|++ .-... -.++|.-. +...=+.|.+..||
T Consensus 797 a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive-~Dp~v--L~~~dvq~-~Vh~R~~DssasVR 872 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVE-ADPSV--LSRPDVQE-AVHGRLNDSSASVR 872 (1692)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh-cChHh--hcCHHHHH-HHHHhhccchhHHH
Confidence 4667788888899999999999999999998889999999999999998 22222 12344433 45555899999999
Q ss_pred HHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 208 IAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 208 ~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
-||.+-++-.+-.. + .-.+..-..+.--+-+..-.||.-+=+-+-.+-
T Consensus 873 EAaldLvGrfvl~~-~----e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic 920 (1692)
T KOG1020|consen 873 EAALDLVGRFVLSI-P----ELIFQYYDQIIERILDTGVSVRKRVIKILRDIC 920 (1692)
T ss_pred HHHHHHHhhhhhcc-H----HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH
Confidence 99999886544432 1 111111112222233355568988888777765
No 106
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.36 E-value=42 Score=40.71 Aligned_cols=104 Identities=15% Similarity=0.039 Sum_probs=83.5
Q ss_pred CCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 001368 117 KSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMK-FNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIM 195 (1091)
Q Consensus 117 ~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK-~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~ 195 (1091)
|.+.+.+..|+.|||.++.-..+....-.+..+..+.+.+= .+..-+..++|.+|.++++..-+-.-+++..+|--+ .
T Consensus 269 dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr-l 347 (533)
T KOG2032|consen 269 DPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR-L 347 (533)
T ss_pred CchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH-H
Confidence 33445667899999999999889998888888888888664 455778899999999999977755556666777664 6
Q ss_pred HHhccCcchHHHHHHHHHHHHHHhhc
Q 001368 196 RFAIVDKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 196 r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
|.-..|....+|.+|..-.+.|.+-.
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 77677788999999999999988864
No 107
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.66 E-value=1.5e+02 Score=39.04 Aligned_cols=137 Identities=18% Similarity=0.183 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCC-----ChHhHHHHHHHHHHHHHHHhhHHh--hcHHHH-HHHHH
Q 001368 82 RHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKS-----EPQKVAGAAQCLGELYRQFGRRIT--SGLLET-TIIAA 153 (1091)
Q Consensus 82 R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~-----sp~~~~aA~~cLG~l~~~~G~~l~--s~~~e~-~~~ll 153 (1091)
|-....|+-.+=+|--...+=-.+..|.+|+.+-+.+ .|.++-+|+..+|.+...+-+.-- +.++.. ++..+
T Consensus 389 ~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf 468 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF 468 (1010)
T ss_pred cHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence 4456777777777765666777888999999854433 233444899999999876544332 334332 33344
Q ss_pred HHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHhhc
Q 001368 154 KLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIV-DKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 154 K~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~-Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
-.++++--.+|+-+...++.... +. --|+...++++.. ...|+. |+.+|||+-|+-.|..+..+.
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~-~d-f~d~~~l~~ale~-t~~~l~~d~~lPV~VeAalALq~fI~~~ 534 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSS-ID-FKDPNNLSEALEL-THNCLLNDNELPVRVEAALALQSFISNQ 534 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHh-cc-CCChHHHHHHHHH-HHHHhccCCcCchhhHHHHHHHHHHhcc
Confidence 45555544588888888887653 22 3368889999995 566666 999999999987776666553
No 108
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=69.38 E-value=45 Score=31.58 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=55.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q 001368 147 ETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 147 e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
+++.-+++.+......+|.+.+..|++.++.-. .+..-...+.. ++...+.|.+..|--+|++|+.+|+...
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~-l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILD-LFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHH-HHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 455667777777788899999999999999444 21222445555 4666799999999999999999999875
No 109
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.32 E-value=1.4e+02 Score=38.30 Aligned_cols=70 Identities=26% Similarity=0.202 Sum_probs=51.2
Q ss_pred hhHhhhccccCCCchhHHHHHhHHhhhcccCccchhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccCchhhh
Q 001368 972 FFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVI 1044 (1091)
Q Consensus 972 ~~~~~~~~~~~~~~~~eai~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a~~v~ 1044 (1091)
+...|+. +-.+.+..||-+-.+.|.==.|+.+.-. |..|+..|+|+...||-||+..|+++....|..|.
T Consensus 249 fl~s~l~-~K~emV~~EaArai~~l~~~~~r~l~pa--vs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 249 FLESCLR-HKSEMVIYEAARAIVSLPNTNSRELAPA--VSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred HHHHHHh-chhHHHHHHHHHHHhhccccCHhhcchH--HHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc
Confidence 4555643 3345556777777777653333333323 89999999999999999999999999999997654
No 110
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=69.25 E-value=3.1e+02 Score=34.48 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=125.5
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHh
Q 001368 43 LSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQK 122 (1091)
Q Consensus 43 L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~ 122 (1091)
...|.+.+..++.+++++.=+++...- -..-.|+.+=.+++.. |.. +.+..+.++|. +++-++..
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~-------~~~~~r~~~lDal~~a---GT~----~av~~i~~~I~-~~~~~~~e 413 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKS-------KKEQARKIFLDALPQA---GTN----PAVKFIKDLIK-SKKLTDDE 413 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS----------HHHHHHHHHHHHHH----SH----HHHHHHHHHHH-TT-S-HHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHH-cCCCCHHH
Confidence 566788888899998776554432221 2233477777777764 443 36678888887 33333332
Q ss_pred HHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHHhcCCCC-------------Cchh
Q 001368 123 VAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF----NEEFVRQEALLLLQNALEGSGGS-------------AAAS 185 (1091)
Q Consensus 123 ~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~----~~a~~R~~~l~~L~kil~g~g~~-------------~~~~ 185 (1091)
. . +++..++..+..--.+++..++.++|. ++..+|..++.+++.++...-.. ..+.
T Consensus 414 a---~----~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~ 486 (618)
T PF01347_consen 414 A---A----QLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEK 486 (618)
T ss_dssp H---H----HHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GG
T ss_pred H---H----HHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHH
Confidence 2 1 333334444545667888888888885 56789999999999988765443 1233
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCC---ChhHHHHHHHHHHHHHHh
Q 001368 186 AYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDP---IASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 186 ~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s---~~~vR~a~A~~Lg~lLa~ 262 (1091)
+.+.+.+ ..+.+.++++...+..+.+.|+.+... .....+.+.+++. +..+|.++-.+|..+. .
T Consensus 487 ~~~~l~~-~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~-~ 553 (618)
T PF01347_consen 487 YVPYLEQ-ELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA-K 553 (618)
T ss_dssp GTHHHHH-HHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG-G
T ss_pred HHHHHHH-HHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHh-h
Confidence 4445555 466667778888888888888776543 2555666777776 6677776665555431 1
Q ss_pred ccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHH
Q 001368 263 GMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQA 321 (1091)
Q Consensus 263 ~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~ 321 (1091)
.-.+.....|..-|...+ -.-|+|++ ||..++..
T Consensus 554 --------------------~~~~~v~~~l~~I~~n~~--e~~EvRia---A~~~lm~~ 587 (618)
T PF01347_consen 554 --------------------HCPEKVREILLPIFMNTT--EDPEVRIA---AYLILMRC 587 (618)
T ss_dssp --------------------T-HHHHHHHHHHHHH-TT--S-HHHHHH---HHHHHHHT
T ss_pred --------------------cCcHHHHHHHHHHhcCCC--CChhHHHH---HHHHHHhc
Confidence 111222346777777665 45789986 45555443
No 111
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.21 E-value=13 Score=45.37 Aligned_cols=81 Identities=7% Similarity=0.106 Sum_probs=64.4
Q ss_pred cccCCcchhHHHHHHHHHHHhhcCCcccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchhhhHHHH
Q 001368 854 TVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLA 933 (1091)
Q Consensus 854 v~~~dp~~Ra~~aLALG~I~r~vGgmas~~~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~stL~ll 933 (1091)
..+-+|+.|+|.|.|||---.-.| .+.+.+||-+|..|++.-|+--|.-|+..|.--..+--.|-|....-..
T Consensus 595 s~shN~hVR~g~AvaLGiacag~G-------~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f 667 (926)
T COG5116 595 SESHNFHVRAGVAVALGIACAGTG-------DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKF 667 (926)
T ss_pred hhccchhhhhhhHHHhhhhhcCCc-------cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHH
Confidence 346789999999999996544333 6899999999999999999999999999988777777777777666665
Q ss_pred HHHhccCCC
Q 001368 934 MEILLSEEN 942 (1091)
Q Consensus 934 ~~lll~~~~ 942 (1091)
.++.. +.|
T Consensus 668 ~~vI~-~Kh 675 (926)
T COG5116 668 NRVIV-DKH 675 (926)
T ss_pred HHHHh-hhh
Confidence 55554 444
No 112
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=67.97 E-value=2.6e+02 Score=35.03 Aligned_cols=48 Identities=25% Similarity=0.142 Sum_probs=36.3
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHH
Q 001368 159 NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGA 211 (1091)
Q Consensus 159 ~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa 211 (1091)
-|+.+|.+|..+|.+.=+..|+ .+.-.+-++|...+ +|.|-.||++|.
T Consensus 144 RE~~VR~eAv~~L~~~Qe~~~n--een~~~n~l~~~vq---nDPS~EVRr~al 191 (885)
T COG5218 144 REKAVRREAVKVLCYYQEMELN--EENRIVNLLKDIVQ---NDPSDEVRRLAL 191 (885)
T ss_pred chHHHHHHHHHHHHHHHhccCC--hHHHHHHHHHHHHh---cCcHHHHHHHHH
Confidence 6999999999999998876652 34555567775433 689999998874
No 113
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.08 E-value=3.7e+02 Score=34.48 Aligned_cols=82 Identities=17% Similarity=0.289 Sum_probs=56.0
Q ss_pred hHHHHHhHHhhhcccCccchhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccCch-hhhhhchHHHHHHhhccCCCHHHH
Q 001368 987 KWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPD-SVIEERIEGNLFHMLDEETDSEYV 1065 (1091)
Q Consensus 987 ~eai~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a~-~v~~~~le~~Lf~~LD~e~d~~l~ 1065 (1091)
-|+|++.-| .+|.+==++.-|..|++.|++...-+|=.|.+.+..|+--+.. +..++. -+.++..|.+|+|..++
T Consensus 311 FeaI~l~~h---~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSir 386 (938)
T KOG1077|consen 311 FEAISLAIH---LDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIR 386 (938)
T ss_pred HHHHHHHHH---cCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHH
Confidence 455555433 3455444455577899999999999999999988888766543 333444 66777788888887777
Q ss_pred H-----HHHHHh
Q 001368 1066 K-----SYTLCL 1072 (1091)
Q Consensus 1066 ~-----~~~~~~ 1072 (1091)
| +|..|-
T Consensus 387 rravDLLY~mcD 398 (938)
T KOG1077|consen 387 RRAVDLLYAMCD 398 (938)
T ss_pred HHHHHHHHHHhc
Confidence 6 566664
No 114
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.43 E-value=58 Score=41.37 Aligned_cols=176 Identities=14% Similarity=0.106 Sum_probs=102.2
Q ss_pred ccCCcchhHHHHHHHHHHHhhcCCcccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchhh-hHHHH
Q 001368 855 VVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQA-TLGLA 933 (1091)
Q Consensus 855 ~~~dp~~Ra~~aLALG~I~r~vGgmas~~~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~s-tL~ll 933 (1091)
...+|+.|.-.+......|+..+-+ -|=...+..|..|..|++|.|=.=|++||..|.++..-........ .+..+
T Consensus 131 ~d~~~yvRktaa~~vakl~~~~~~~---~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~l 207 (734)
T KOG1061|consen 131 KDDDPYVRKTAAVCVAKLFDIDPDL---VEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKL 207 (734)
T ss_pred cCCChhHHHHHHHHHHHhhcCChhh---ccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHH
Confidence 4688999999999999999998877 4567788889999999999999999999999999854322222222 22222
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHHHhhCCCCCCchhhhHhhhc--cccCCCchhHHHHHhHHhhhcccCccchhhHHH
Q 001368 934 MEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKV--SAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQ 1011 (1091)
Q Consensus 934 ~~lll~~~~~~~~~~~~igr~l~alI~~LGPeLq~~s~~~~~~~~--~~~~~~~~~eai~clQqL~lFAP~~v~~~~lV~ 1011 (1091)
+.-+-.-+ .-.-.-+++++.+..=++=.+.-.+..+|.. .+....+...+++.+-|+.-+-+. ++ ..+..
T Consensus 208 L~al~ec~------EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~-~~~~~ 279 (734)
T KOG1061|consen 208 LEALNECT------EWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VN-ELLFK 279 (734)
T ss_pred HHHHHHhh------hhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HH-HHHHH
Confidence 22111100 1122334555555443332222223333311 122222335555555444444444 11 11222
Q ss_pred HHHHhh---cCCChHHHHHHHHHHHHHHccCch
Q 001368 1012 TLLSTL---SSRQPILRHLAVSTLRHLIEKDPD 1041 (1091)
Q Consensus 1012 ~L~~~L---~S~~~~Lr~aAv~cLrqL~qr~a~ 1041 (1091)
.+..-| .|..+.+.-+|+.=.+.++|+.+.
T Consensus 280 K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~ 312 (734)
T KOG1061|consen 280 KVAPPLVTLLSSESEIQYVALRNINLILQKRPE 312 (734)
T ss_pred HhcccceeeecccchhhHHHHhhHHHHHHhChH
Confidence 222211 244448889999999999999986
No 115
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=63.36 E-value=2e+02 Score=33.41 Aligned_cols=184 Identities=17% Similarity=0.143 Sum_probs=105.9
Q ss_pred HHHHHHHHHhhcCCcccccchhhHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHh---ccC
Q 001368 865 IALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSI-PGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEIL---LSE 940 (1091)
Q Consensus 865 ~aLALG~I~r~vGgmas~~~l~t~v~iL~sL~~Dp~-P~Vh~WaL~aL~li~dsaG~~f~~~v~stL~ll~~ll---l~~ 940 (1091)
..-||+.=+.+.+ ...-+.++..+-.=.+|.. |+-+.|.+.-....-+........++++.+..+.+.+ ...
T Consensus 43 ~l~al~~~~~~~~----~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 118 (339)
T PF12074_consen 43 LLSALFKHLFFLS----SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASAN 118 (339)
T ss_pred HHHHHHHHHHHhC----cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445555444442 2334777888888778888 4778887755444432333344555666666666655 222
Q ss_pred CCCCchhHHHHHHHHHHHH-----------------HhhCCCCCC--chhhhHhhhccccCCCchhHHHHHhHHhhhccc
Q 001368 941 ENGWVDLQQGVGRLINAIV-----------------AVLGPELAP--GSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAP 1001 (1091)
Q Consensus 941 ~~~~~~~~~~igr~l~alI-----------------~~LGPeLq~--~s~~~~~~~~~~~~~~~~~eai~clQqL~lFAP 1001 (1091)
|..........|-.+=..+ -.++|+-+. +..+++.. ..+++....++.++.+..+-+
T Consensus 119 p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl----~~~~d~~w~~~al~~~~~~~~ 194 (339)
T PF12074_consen 119 PLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL----ASEEDLCWLLRALEALLSDHP 194 (339)
T ss_pred CCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc----CCHhHHHHHHHHHHHHHhcch
Confidence 2211111111111111111 123443331 12233331 233344777888888877777
Q ss_pred Cccchhh---HHHHHHHhhcCC--ChHHHHHHHHHHHHHHccCchhhhhhchHHHHHHhhc
Q 001368 1002 QAVSVHS---HVQTLLSTLSSR--QPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLD 1057 (1091)
Q Consensus 1002 ~~v~~~~---lV~~L~~~L~S~--~~~Lr~aAv~cLrqL~qr~a~~v~~~~le~~Lf~~LD 1057 (1091)
....-.. +-+.+...++++ .+..|+.|...+++++.+++.. ....+.+.+|..|.
T Consensus 195 ~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 195 SELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWLS 254 (339)
T ss_pred hhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHH
Confidence 6665443 556666777787 8999999999999999999987 44567777777663
No 116
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=63.28 E-value=3.9e+02 Score=33.55 Aligned_cols=213 Identities=17% Similarity=0.169 Sum_probs=123.5
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccC-CCCcchhHHH
Q 001368 232 NSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRAN-GAKSKNMRVN 310 (1091)
Q Consensus 232 ~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~-~~~~r~~R~G 310 (1091)
++...+.+-+.+. .+|..+..|+..++-.+....-.. .+....+++++.+. .+ |-++. +-.++| ..
T Consensus 222 ~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~E-----s~n~T~krL~~i~~-~l---fp~~kk~~i~~D--~~ 288 (552)
T PF14222_consen 222 SLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCPE-----SLNNTTKRLDSIFK-LL---FPKGKKGWIPRD--PE 288 (552)
T ss_pred HHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccCC-----CchHHHHHHHHHHH-HH---ccCCCCcccCCC--hh
Confidence 4566666666666 799999999999997776222100 11223457777664 22 22221 113455 46
Q ss_pred HHHHHHHHHHHhccccCCCCchhhHHH--HHHHHHhccCC------CccH----HHHHHHHHHHHHhh------------
Q 001368 311 LTLSWVYFLQAIRLKYFHPDSELQDYA--LQVMDMLRADI------FVDS----HALACVLYILRIGV------------ 366 (1091)
Q Consensus 311 v~~ayv~fl~~lg~~~le~~~~~~~y~--~~i~~ll~~~~------~~~~----~~r~~v~~ILr~~i------------ 366 (1091)
..+.+|.+++.+|...++ |. .+|.+++.... ..++ ...|.+..|+.+.=
T Consensus 289 ~~~~lv~ii~~I~~~~~d-------f~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~ 361 (552)
T PF14222_consen 289 PLNPLVQIIRFIGYKHLD-------FAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTS 361 (552)
T ss_pred hhhhHHHHHHhHhhhCcc-------hHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcC
Confidence 778899999999986553 44 34677777322 2222 12477888888732
Q ss_pred --------------hccCCcHHH---------HHHHHHHHhhc---c--------------c-C--------------CC
Q 001368 367 --------------TDQMTEPTQ---------RSFLVFLGKQL---Q--------------A-V--------------DA 391 (1091)
Q Consensus 367 --------------~~~LgE~~Q---------~~~~~~l~~~~---~--------------~-~--------------~~ 391 (1091)
.+.+++... .++++.+.+-+ . . . |.
T Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~ 441 (552)
T PF14222_consen 362 DPSGNTLRVKYTPSNEYLSNEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDM 441 (552)
T ss_pred CCCCcccccccCcccccccchhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCcccccccccccc
Confidence 112222211 23333333311 0 0 0 11
Q ss_pred -ChhHHHHHHHHHHHHHHHhCCCch-h-hHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHH
Q 001368 392 -SPFMKIAALRTLSYTLKTLGEVPS-E-FKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLN 467 (1091)
Q Consensus 392 -s~~~lv~aL~el~~Ll~~LGsa~~-~-~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~ 467 (1091)
+++ --.++.+.-.|+.+=-.-+ . ....+.|.|.+...|....||-.|+.+|++++...| ....++......+=
T Consensus 442 ~~~~--~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p-~~~~vi~~Fa~Fif 517 (552)
T PF14222_consen 442 VTDQ--KPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP-NRQQVITGFARFIF 517 (552)
T ss_pred cccc--cchhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHe
Confidence 111 1222333333333322111 1 245689999999999999999999999999999999 88888876665553
No 117
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.74 E-value=13 Score=46.76 Aligned_cols=102 Identities=14% Similarity=0.145 Sum_probs=71.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccc
Q 001368 149 TIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVG 228 (1091)
Q Consensus 149 ~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~ 228 (1091)
...++.++...++.+..+++.-+..++...= +.+.-++=| .++-+.|.+++=|--|+=|... .|++..
T Consensus 6 Aa~lialL~e~~~~lk~~Al~~in~vVd~~W----pEIsd~l~~--IE~lyed~~F~er~~AaL~~SK------Vyy~Lg 73 (929)
T KOG2062|consen 6 AAGLIALLREPEPSLKVHALFKINNVVDQFW----PEISDSLPK--IESLYEDETFPERQLAALLASK------VYYYLG 73 (929)
T ss_pred hHHHHHHHhCCchHHHHHHHHHHHHHHHHhh----HHhhhhHHH--HHHHhccCCCchhHHHHHHHHH------HHHHHH
Confidence 3457778888899999999999999887544 222223333 5667889999988777766533 355668
Q ss_pred hhhhHHHHHHHh-----ccCCChhHHHHHHHHHHHHHHh
Q 001368 229 ELDNSATHCVKA-----IEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 229 dlE~l~tl~~K~-----le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
|+|.-....+++ .+..+..+-.-+|+|+-.....
T Consensus 74 eye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~ 112 (929)
T KOG2062|consen 74 EYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIET 112 (929)
T ss_pred HHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHH
Confidence 888888888877 2335555777888888776644
No 118
>PRK04330 hypothetical protein; Provisional
Probab=61.71 E-value=39 Score=31.78 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHHHHHHhcCCcchHHHHHH--Hhhccccc-CCcchhHHHHHHHHHHHhhcCCcccccchhhHHHHHHHHh
Q 001368 820 GSEVLNSIQAIFLSILAEGDICASQRRAL--LLGDLTVV-TDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLA 896 (1091)
Q Consensus 820 ~~~v~~~~~~li~~~l~~~d~~~~~r~aa--~l~~lv~~-~dp~~Ra~~aLALG~I~r~vGgmas~~~l~t~v~iL~sL~ 896 (1091)
+++..+.+..+++.+..+...=-+.|++| ....+... .+|..|| .+.+++|=-++
T Consensus 7 ~e~~ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~~~~~vRa----------------------A~AIs~LdeIs 64 (88)
T PRK04330 7 NEEKIKQAIQMLEEIINDTSVPRNIRRAATEAKEILLNEEESPGVRA----------------------ATAISILDEIS 64 (88)
T ss_pred hHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCcCcchhHHH----------------------HHHHHHHHHhh
Confidence 57888889999998887654323677777 45445454 4688888 47788899999
Q ss_pred cCCC-Cc---hhHHHHHHH
Q 001368 897 KTSI-PG---LQMWSLHGL 911 (1091)
Q Consensus 897 ~Dp~-P~---Vh~WaL~aL 911 (1091)
|||+ |. ...|-+-+.
T Consensus 65 ~DPNmP~h~RT~IW~ivS~ 83 (88)
T PRK04330 65 NDPNMPLHTRTLIWNIVSQ 83 (88)
T ss_pred cCCCCChHHHHHHHHHHHH
Confidence 9999 53 334766543
No 119
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=61.65 E-value=1.6e+02 Score=30.78 Aligned_cols=122 Identities=10% Similarity=0.016 Sum_probs=83.4
Q ss_pred HHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHh-hcHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHhcCCCCC
Q 001368 105 VSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRIT-SGLLETTIIAAKLMKFN-EEFVRQEALLLLQNALEGSGGSA 182 (1091)
Q Consensus 105 vn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~-s~~~e~~~~llK~lK~~-~a~~R~~~l~~L~kil~g~g~~~ 182 (1091)
++.++..|+ ++++..+-++++-++.+.+.=|..+. +....-+..+++.++++ ....+..+..++.+++.-+++--
T Consensus 27 ~~ri~~LL~---s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 27 VTRINSLLQ---SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHhC---CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345566665 33466665788888888888755555 88888999999999885 45688899999999999887544
Q ss_pred chhHHHHH-----HHHHHHHhcc-CcchHHHHHHHHHHHHHHhhcCCCc--ccchhhh
Q 001368 183 AASAYSEA-----FRLIMRFAIV-DKSFVVRIAGARCLKAFAHIGGPCL--GVGELDN 232 (1091)
Q Consensus 183 ~~~~~~di-----~K~~~r~~~~-Dks~~Vr~aAa~cL~~l~~~~~~~~--~~~dlE~ 232 (1091)
...|++ =| +..+++. .+...+...+.++|..+....++-+ +.+.+|+
T Consensus 104 --~l~Rei~tp~l~~-~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~ 158 (165)
T PF08167_consen 104 --TLTREIATPNLPK-FIQSLLQLLQDSSCPETALDALATLLPHHPTTFRPFANKIES 158 (165)
T ss_pred --chHHHHhhccHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHCCccccchHHHHHH
Confidence 345554 22 3444332 1226777788999999888753334 3444443
No 120
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=61.32 E-value=37 Score=31.72 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHHHhcCCcchHHHHHH--Hhhccccc-CCcchhHHHHHHHHHHHhhcCCcccccchhhHHHHHHHHh
Q 001368 820 GSEVLNSIQAIFLSILAEGDICASQRRAL--LLGDLTVV-TDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLA 896 (1091)
Q Consensus 820 ~~~v~~~~~~li~~~l~~~d~~~~~r~aa--~l~~lv~~-~dp~~Ra~~aLALG~I~r~vGgmas~~~l~t~v~iL~sL~ 896 (1091)
+++..+.+..+++.+..++..=-+.|.+| ....+... .+|..|| .+.+++|=-.+
T Consensus 4 ~e~~i~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~e~~~~~vRa----------------------ataIs~LdeIs 61 (85)
T PF03685_consen 4 NEEKIKQAIQMLERIINDTSVPRNIRRAAEEAKEILNNEEESPGVRA----------------------ATAISILDEIS 61 (85)
T ss_dssp HHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-TTS-HHHHH----------------------HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCCCcchhHhH----------------------HHHHHHHHHhh
Confidence 35677778888888887654323677776 55555554 4588898 57788899999
Q ss_pred cCCCCchh----HHHHHH
Q 001368 897 KTSIPGLQ----MWSLHG 910 (1091)
Q Consensus 897 ~Dp~P~Vh----~WaL~a 910 (1091)
|||+=.+| .|-+-+
T Consensus 62 nDPNmP~h~RT~IW~i~S 79 (85)
T PF03685_consen 62 NDPNMPSHTRTLIWNIVS 79 (85)
T ss_dssp T-TTS-HHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHH
Confidence 99994344 476654
No 121
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=61.21 E-value=2.6e+02 Score=30.83 Aligned_cols=195 Identities=15% Similarity=0.062 Sum_probs=117.6
Q ss_pred ccCCCCchHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHH
Q 001368 30 SQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQ 109 (1091)
Q Consensus 30 ~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~ 109 (1091)
.++.++|.+....|..|-......+ .+-.-+.+.|..+... ++...|-..-|=+..+.+.+|+. | ..|+
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-----~~~~~v~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~--f---~~L~ 77 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-----VCVPPVLQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRH--F---PFLQ 77 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-----cchhHHHHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchH--H---HHHH
Confidence 5777888888888888776653321 3333444555444433 33333777888999999999984 2 3555
Q ss_pred Hhhhc--------CC-CC-ChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHhcC
Q 001368 110 GFLSD--------GK-KS-EPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLM-KFNEEFVRQEALLLLQNALEGS 178 (1091)
Q Consensus 110 ~iL~~--------~K-~~-sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~l-K~~~a~~R~~~l~~L~kil~g~ 178 (1091)
+++.. .+ ++ .-+...+...++-++-+...+ -..+.+..+-..+ +.+.+..+..++.++..+++.-
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 55543 12 11 222223444555555555555 3445555555555 7788889999999999999421
Q ss_pred CCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchh----hhHHHHHHHhccCCChh
Q 001368 179 GGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGEL----DNSATHCVKAIEDPIAS 247 (1091)
Q Consensus 179 g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dl----E~l~tl~~K~le~s~~~ 247 (1091)
- --....||.+.+..-.|+...|-.+-+ .|..++.++ + +...++ +.+..++|+.....+..
T Consensus 154 v-----vd~~s~w~vl~~~l~~~~rp~v~~~l~-~l~~l~~~~-~-~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 154 V-----VDFYSAWKVLQKKLSLDYRPLVLKSLC-SLFALVPQG-A-VDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred h-----ccHHHHHHHHHHhcCCccchHHHHHHH-HHHHHhccc-c-CChhhhhHHHHHHHHHHHhhccccccc
Confidence 1 125566776666554566666665544 455566553 2 222333 36788899998887743
No 122
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=60.88 E-value=69 Score=42.90 Aligned_cols=163 Identities=18% Similarity=0.130 Sum_probs=98.8
Q ss_pred HHHHHHhhcCCcchhHHhHHHHHHhhhc---CCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHH---HHHHhccCc
Q 001368 87 VAMGRIISKGDNISVYSRVSSLQGFLSD---GKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTII---AAKLMKFNE 160 (1091)
Q Consensus 87 ~cla~l~~~GD~~~lfdtvn~l~~iL~~---~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~---llK~lK~~~ 160 (1091)
.-+-++++.--+.++|+..-.+-++|-. +--++....+.-....-.+|- .+++.+..+.+. +++..+++|
T Consensus 754 el~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~----~m~s~l~~~~~~l~~l~~~~~s~~ 829 (1549)
T KOG0392|consen 754 ELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAP----LMHSFLHPLGSLLPRLFFFVRSIH 829 (1549)
T ss_pred HHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHH----hhhhhhhhhhhhhhHHHHhcccch
Confidence 3344455555566777766655444321 100000122223333333333 333444434444 455556789
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc-CCCc-ccchhhhHHHHHH
Q 001368 161 EFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG-GPCL-GVGELDNSATHCV 238 (1091)
Q Consensus 161 a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~-~~~~-~~~dlE~l~tl~~ 238 (1091)
..+|+++.++++-+-+.+- -..+...+..+... +.|-+-.||..++.|+..+.... ..++ .-.-+ ++-..+
T Consensus 830 ~a~r~~~ar~i~~~~k~~~----~e~m~~v~~~~~~l-l~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~L--lv~pll 902 (1549)
T KOG0392|consen 830 IAVRYAAARCIGTMFKSAT----RETMATVINGFLPL-LGDLDKFVRRQGADELIELLDAVLMVGLVPYNPL--LVVPLL 902 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhh-ccchhhHhhhhhHHHHHHHHHHhhccccccccee--ehhhhh
Confidence 9999999999887665221 22344444434443 67888899999999998877653 2222 22334 777889
Q ss_pred HhccCCChhHHHHHHHHHHHHH
Q 001368 239 KAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 239 K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
+-+.+.++.||.++.++++.+.
T Consensus 903 r~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 903 RRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred cccccchHHHHHHHHHHHHHHh
Confidence 9999999999999999999987
No 123
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.52 E-value=2.1e+02 Score=37.28 Aligned_cols=155 Identities=15% Similarity=0.087 Sum_probs=94.3
Q ss_pred chhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhc-cCCCccHHHH-HHHHHHHHHhhhccC--CcHHHHHHHH
Q 001368 305 KNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLR-ADIFVDSHAL-ACVLYILRIGVTDQM--TEPTQRSFLV 380 (1091)
Q Consensus 305 r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~-~~~~~~~~~r-~~v~~ILr~~i~~~L--gE~~Q~~~~~ 380 (1091)
|.-|..+.+.....-..+|.. -+..+...+-..++ ++.+.+..-| ...-|-+.. |.+-+ .|+.+..-+.
T Consensus 438 ~~YR~diSD~~~~~Y~ilgd~------ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~s-va~~~~~t~~~~i~rl~ 510 (982)
T KOG2022|consen 438 ESYRKDISDLLMSSYSILGDG------LLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQS-VAEYLGETESTWIPRLF 510 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHH-HHhhcCcchhHHHHHHH
Confidence 456777777666666667741 12344434444444 2222222222 222333333 33344 4556654444
Q ss_pred HHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcchhhHHH
Q 001368 381 FLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLIT 460 (1091)
Q Consensus 381 ~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll~ 460 (1091)
...-.++-..++++.+-.+.+.+|.+...||+.+--+-- -.+.|++-|-.+.-+++ |--.|+.+|..+|..+.|-++
T Consensus 511 ~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~-sl~~L~~~Lh~sk~s~q--~i~tl~tlC~~C~~~L~py~d 587 (982)
T KOG2022|consen 511 ETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNP-SLPLLFQGLHNSKESEQ--AISTLKTLCETCPESLDPYAD 587 (982)
T ss_pred HhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCc-hHHHHHHHhcCchHHHH--HHHHHHHHHHhhhhhCchHHH
Confidence 444444444567777779999999999999998863211 24566666666666654 555699999999999999998
Q ss_pred HHHHHHHhh
Q 001368 461 YGVTTLNAL 469 (1091)
Q Consensus 461 ~~~~~L~~~ 469 (1091)
..+...+..
T Consensus 588 ~~~a~~~e~ 596 (982)
T KOG2022|consen 588 QFSAVCYEV 596 (982)
T ss_pred HHHHHHHHH
Confidence 877776655
No 124
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=60.44 E-value=4.4e+02 Score=34.34 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHHhhHHhhcHHHHH-HHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcc
Q 001368 122 KVAGAAQCLGELYRQFGRRITSGLLETT-IIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIV 200 (1091)
Q Consensus 122 ~~~aA~~cLG~l~~~~G~~l~s~~~e~~-~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~ 200 (1091)
.+.|...-+-.+-...|-.+ +-+.. ..+..++-++..-.|.++-+.+.+++...| .....+..++|. ......
T Consensus 495 vr~ail~~ip~la~q~~~~~---~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~-L~~~~q 568 (759)
T KOG0211|consen 495 VRLAILEYIPQLALQLGVEF---FDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKL-LAMDLQ 568 (759)
T ss_pred HHHHHHHHHHHHHHhhhhHH---hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHH-HHHhcC
Confidence 44566666666666666222 33333 334445666778899999999999999999 447889999996 554344
Q ss_pred CcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 201 DKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 201 Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
| ++-+|.+...|+..++.--|.-+. -+.+.........++++.||.-+|+.|-.++
T Consensus 569 ~-~y~~R~t~l~si~~la~v~g~ei~---~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 569 D-NYLVRMTTLFSIHELAEVLGQEIT---CEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred c-ccchhhHHHHHHHHHHHHhccHHH---HHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 4 899999999999888775322111 2457888889999999999999999999888
No 125
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=60.05 E-value=11 Score=28.90 Aligned_cols=29 Identities=24% Similarity=0.126 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001368 420 VLDSTVVAAVSHSSQLVRIEAALTLRALA 448 (1091)
Q Consensus 420 ~l~d~l~~ll~hps~svRi~AA~cLr~~~ 448 (1091)
+..+.|++++.+++..++-+|.|+|+.++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 36788999999999999999999999876
No 126
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=59.68 E-value=4.5e+02 Score=33.04 Aligned_cols=139 Identities=18% Similarity=0.124 Sum_probs=87.1
Q ss_pred HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC
Q 001368 103 SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA 182 (1091)
Q Consensus 103 dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~ 182 (1091)
+..++-..||...|.+...|+ -|..-+...|+.|- ++..+++.+.+.+....+..+|..+++.|-.+++.-..-.
T Consensus 20 ~~~~~y~~il~~~kg~~k~K~-Laaq~I~kffk~FP----~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 20 QHEEDYKEILDGVKGSPKEKR-LAAQFIPKFFKHFP----DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp GGHHHHHHHHHGGGS-HHHHH-HHHHHHHHHHCC-G----GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H
T ss_pred cCHHHHHHHHHHccCCHHHHH-HHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH
Confidence 345566667765555444555 57777777777554 5678899999999999999999999999999998654333
Q ss_pred chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhcc---CCChhHHHHHHHHHHHH
Q 001368 183 AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIE---DPIASVRDAFAEALGSL 259 (1091)
Q Consensus 183 ~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le---~s~~~vR~a~A~~Lg~l 259 (1091)
.=..||.=+ .+.--......+.-++|..|++.+ | ....+-.|+-++ +.+..+|.-+=+.|.+=
T Consensus 95 --~kvaDvL~Q----lL~tdd~~E~~~v~~sL~~ll~~d-~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 95 --SKVADVLVQ----LLQTDDPVELDAVKNSLMSLLKQD-P-------KGTLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp --HHHHHHHHH----HTT---HHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred --hHHHHHHHH----HHhcccHHHHHHHHHHHHHHHhcC-c-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 224566554 344344445556678898888875 2 345555566665 56788998766666654
Q ss_pred H
Q 001368 260 L 260 (1091)
Q Consensus 260 L 260 (1091)
+
T Consensus 161 l 161 (556)
T PF05918_consen 161 L 161 (556)
T ss_dssp G
T ss_pred H
Confidence 4
No 127
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=58.54 E-value=1.8e+02 Score=30.95 Aligned_cols=125 Identities=20% Similarity=0.127 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhH
Q 001368 61 WQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR 140 (1091)
Q Consensus 61 ~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~ 140 (1091)
.||++++=|. +...+..++|...-+.+..+-.-|=.-+. +.+-.+..+.. |.++..+.-|..++.+++++++.+
T Consensus 6 ~Qryl~~Il~--~~~~~~~~vr~~Al~~l~~il~qGLvnP~-~cvp~lIAL~t---s~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 6 VQRYLKNILE--LCLSSDDSVRLAALQVLELILRQGLVNPK-QCVPTLIALET---SPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHH--HHhCCCHHHHHHHHHHHHHHHhcCCCChH-HHHhHhhhhhC---CCChHHHHHHHHHHHHHHHHhHHH
Confidence 4777766554 66788999999999999999887744333 24445555554 445665557999999999999999
Q ss_pred HhhcHHHHHHHHHHHhcc---CcHH-H---HHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 001368 141 ITSGLLETTIIAAKLMKF---NEEF-V---RQEALLLLQNALEGSGGSAAASAYSEAFR 192 (1091)
Q Consensus 141 l~s~~~e~~~~llK~lK~---~~a~-~---R~~~l~~L~kil~g~g~~~~~~~~~di~K 192 (1091)
+-+.+.+.+...++.-+. +..+ . -.+.+..+-.+++ -+........+-+-|
T Consensus 80 v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k 137 (187)
T PF12830_consen 80 VESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLK 137 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHH
Confidence 999999999999998875 1111 1 4566666666666 222223344444444
No 128
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=58.54 E-value=4.1e+02 Score=32.28 Aligned_cols=119 Identities=11% Similarity=0.060 Sum_probs=76.2
Q ss_pred HhhcHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCCchhHH------HHHHHHHHHHhccCcchHHHHHHHHH
Q 001368 141 ITSGLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSAAASAY------SEAFRLIMRFAIVDKSFVVRIAGARC 213 (1091)
Q Consensus 141 l~s~~~e~~~~llK~lK~-~~a~~R~~~l~~L~kil~g~g~~~~~~~~------~di~K~~~r~~~~Dks~~Vr~aAa~c 213 (1091)
+....+..+..++++++. ....+...++..+.-++....... +-.+ .|.|...++. ++..+-.+.-.|+.+
T Consensus 47 ~~~~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~-~~f~~~~~~~~~~~~~fl~l-L~~~d~~i~~~a~~i 124 (429)
T cd00256 47 LDVLSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRV-KLFHDDALLKKKTWEPFFNL-LNRQDQFIVHMSFSI 124 (429)
T ss_pred hcccHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHH-HHHHHHhhccccchHHHHHH-HcCCchhHHHHHHHH
Confidence 333447788888888886 456777789999999998643211 1111 3456655553 555677888999999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHhccCC-ChhHHHHHHHHHHHHHH
Q 001368 214 LKAFAHIGGPCLGVGELDNSATHCVKAIEDP-IASVRDAFAEALGSLLA 261 (1091)
Q Consensus 214 L~~l~~~~~~~~~~~dlE~l~tl~~K~le~s-~~~vR~a~A~~Lg~lLa 261 (1091)
+..++..+..-....+++.+.+...+.+.++ +......+.+||+++|-
T Consensus 125 Lt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~ 173 (429)
T cd00256 125 LAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR 173 (429)
T ss_pred HHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC
Confidence 9888876422223345555555555555543 34455566689999983
No 129
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=58.05 E-value=64 Score=31.27 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=48.8
Q ss_pred HHHHHHhhhc--CCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCC
Q 001368 105 VSSLQGFLSD--GKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGG 180 (1091)
Q Consensus 105 vn~l~~iL~~--~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~ 180 (1091)
++.+++.+.+ +|++.+.|+ -++..+|++.+..|..+.+..+-++..+.-.+.. ..+|..++.+-...++.++.
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~-~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~ 87 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKK-RALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDE 87 (107)
T ss_pred HHHHHHHHhccccCCCHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCH
Confidence 3455666654 556566777 6999999999966666665555544433333333 37888888888888887763
No 130
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=58.00 E-value=17 Score=28.48 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=26.9
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 001368 1008 SHVQTLLSTLSSRQPILRHLAVSTLRHLI 1036 (1091)
Q Consensus 1008 ~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~ 1036 (1091)
.-||.|...|.++++.+++.|+.+|++|.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999986
No 131
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=57.82 E-value=1.6e+02 Score=31.28 Aligned_cols=154 Identities=17% Similarity=0.081 Sum_probs=90.9
Q ss_pred cCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHH
Q 001368 75 LGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAK 154 (1091)
Q Consensus 75 ~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK 154 (1091)
.|.+-|.++-+++=+..=+... -..++ .+..+.. ....+.+..|+-+++...+.+.. ..+.-+-+
T Consensus 28 ~GV~~p~lr~lak~~~~~~~~~--~~~~~---l~~~L~~---~~~~E~~~la~~il~~~~~~~~~-------~~~~~~~~ 92 (213)
T PF08713_consen 28 LGVRTPDLRKLAKDIYKELKLS--EELYE---LADELWE---SGYREERYLALLILDKRRKKLTE-------EDLELLEK 92 (213)
T ss_dssp ----HHHHHHHHHHHHHHHCTS--HHHHH---HHHHHHC---SSCHHHHHHHHHHHHHCGGG--H-------HHHHHHHH
T ss_pred cCcCcHHHHHHHHHHHhhcccc--hHHHH---HHHHHcC---CchHHHHHHHHHHhHHHhhhhhH-------HHHHHHHH
Confidence 5677788888887776666554 22222 3344443 33445555677777644322111 12444555
Q ss_pred Hhcc--CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhh
Q 001368 155 LMKF--NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDN 232 (1091)
Q Consensus 155 ~lK~--~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~ 232 (1091)
+++. +-+.+=.-+...+.+++..- .+.+.. +..-..|.+.-+|++++-++..+. ...++|.
T Consensus 93 ~~~~~~~W~~~D~~~~~~~~~~~~~~---------~~~~~~-~~~W~~s~~~w~rR~~~v~~~~~~-------~~~~~~~ 155 (213)
T PF08713_consen 93 WLPDIDNWATCDSLCSKLLGPLLKKH---------PEALEL-LEKWAKSDNEWVRRAAIVMLLRYI-------RKEDFDE 155 (213)
T ss_dssp CCCCCCCHHHHHHHTHHHHHHHHHHH---------GGHHHH-HHHHHHCSSHHHHHHHHHCTTTHG-------GGCHHHH
T ss_pred HhccCCcchhhhHHHHHHHHHHHHhh---------HHHHHH-HHHHHhCCcHHHHHHHHHHHHHHH-------HhcCHHH
Confidence 6654 33445444455555554311 233332 333356788999999987764333 3378899
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 233 SATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 233 l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
+..+|-..+.++++.||.+++-+|.++.
T Consensus 156 ~l~~~~~~~~d~~~~vq~ai~w~L~~~~ 183 (213)
T PF08713_consen 156 LLEIIEALLKDEEYYVQKAIGWALREIG 183 (213)
T ss_dssp HHHHHHHCTTGS-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998865
No 132
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=57.24 E-value=19 Score=43.40 Aligned_cols=83 Identities=25% Similarity=0.368 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHH--hhHHhhcHHHHHHHHHHHhccC
Q 001368 82 RHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQF--GRRITSGLLETTIIAAKLMKFN 159 (1091)
Q Consensus 82 R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~--G~~l~s~~~e~~~~llK~lK~~ 159 (1091)
|.++.| |...| |+-+-.|.++|. +.++|...+-|++=+|++.+.+ ||.+...+. .=..++++|...
T Consensus 341 ~EN~~k-----f~~~~----~~llk~L~~iL~--~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~ 408 (429)
T cd00256 341 RENADR-----LNEKN----YELLKILIHLLE--TSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHE 408 (429)
T ss_pred HHHHHH-----HHhcc----hHHHHHHHHHHh--cCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCC
Confidence 666655 44444 677779999995 2345676666888899999986 998876544 344567777777
Q ss_pred cHHHHHHHHHHHHHHHh
Q 001368 160 EEFVRQEALLLLQNALE 176 (1091)
Q Consensus 160 ~a~~R~~~l~~L~kil~ 176 (1091)
.+.+|++|+.+++|++.
T Consensus 409 d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 409 DPNVRYEALLAVQKLMV 425 (429)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 78999999999999854
No 133
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=54.83 E-value=29 Score=42.69 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=87.0
Q ss_pred hcHHHHHHHHHHHhccC--cHHHHHHHHHHH---HHHHhcCCCCC----chhHHHHHHHHHHH--Hh-ccC-cchHHHHH
Q 001368 143 SGLLETTIIAAKLMKFN--EEFVRQEALLLL---QNALEGSGGSA----AASAYSEAFRLIMR--FA-IVD-KSFVVRIA 209 (1091)
Q Consensus 143 s~~~e~~~~llK~lK~~--~a~~R~~~l~~L---~kil~g~g~~~----~~~~~~di~K~~~r--~~-~~D-ks~~Vr~a 209 (1091)
+.++.+..++.-.+-+. .+-+|..+|+.+ ..+++.++... .+.++...||. .. +. -++ .+...|..
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~-~~~~~~~~~~~~~~~lR~~ 393 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPL-IQDSSSQSNSSEDIELRSL 393 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccc-cccccccCCCcccHHHHHH
Confidence 34455555555555444 567899999999 88888777544 35677778885 21 00 112 56789999
Q ss_pred HHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhcc
Q 001368 210 GARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGM 264 (1091)
Q Consensus 210 Aa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~ 264 (1091)
+-+|++.|.+.. |.+-.+|+ .+....|++++++..++|-++-++|+.++....
T Consensus 394 aYe~lG~L~~~~-p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 394 AYETLGLLAKRA-PSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred HHHHHHHHHccC-cccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 999999999997 55555665 578888999999999999999999999995543
No 134
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.62 E-value=2.5e+02 Score=37.77 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCc-hhHHHH----HHHHHHHHhccCcchHHHHHHHHHHHHHHh
Q 001368 145 LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAA-ASAYSE----AFRLIMRFAIVDKSFVVRIAGARCLKAFAH 219 (1091)
Q Consensus 145 ~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~-~~~~~d----i~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~ 219 (1091)
+.--++.++..+-..+..+|.+.+..+++++...-...+ +...|+ +.- +.+.-+.|-+..||.=+...|..+..
T Consensus 310 ~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le-~l~erl~Dvsa~vRskVLqv~~~l~~ 388 (1251)
T KOG0414|consen 310 MLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLE-LLRERLLDVSAYVRSKVLQVFRRLFQ 388 (1251)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH-HHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 333344455566667789999999999998876553332 222332 333 35555789999999999999988888
Q ss_pred hcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 001368 220 IGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 220 ~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
.- ....+-+-.+.++.+.-+++-+.-||+.+.+++..+|..
T Consensus 389 ~~--s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~ 429 (1251)
T KOG0414|consen 389 QH--SIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDR 429 (1251)
T ss_pred cc--CCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhc
Confidence 63 333444556889999999999999999999999999954
No 135
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=53.71 E-value=61 Score=32.04 Aligned_cols=127 Identities=15% Similarity=0.101 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHHHh-ccccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhh-ccCCcHHH--HHHHHH
Q 001368 306 NMRVNLTLSWVYFLQAI-RLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVT-DQMTEPTQ--RSFLVF 381 (1091)
Q Consensus 306 ~~R~Gv~~ayv~fl~~l-g~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~-~~LgE~~Q--~~~~~~ 381 (1091)
-+|.-++.+++.++... ...| ++++..++.++..+........++...+-.+... .......+ .++-..
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W-------p~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~ 75 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW-------PDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDA 75 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS-------TTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhC-------chHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHH
Confidence 46777888888888775 4445 4577777777665311111122333333333332 12222222 122111
Q ss_pred HH-----------hhccc-CCC-ChhHHHHHHHHHHHHHHHhCCCchh-h-HHHHHHHHHHHhcCCchHHHHHHHHHH
Q 001368 382 LG-----------KQLQA-VDA-SPFMKIAALRTLSYTLKTLGEVPSE-F-KEVLDSTVVAAVSHSSQLVRIEAALTL 444 (1091)
Q Consensus 382 l~-----------~~~~~-~~~-s~~~lv~aL~el~~Ll~~LGsa~~~-~-~~~l~d~l~~ll~hps~svRi~AA~cL 444 (1091)
+. +.++. .+. +......+|+.+.+.+. ..+.. + ...+.+.+++.+.+|+. |.+|+.||
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~---~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWIS---WIPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT---TS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH---hCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 11 11111 111 25556688888888877 33332 2 23489999999988887 99999997
No 136
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=53.57 E-value=3.1e+02 Score=38.00 Aligned_cols=114 Identities=13% Similarity=0.101 Sum_probs=83.4
Q ss_pred ChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHh
Q 001368 119 EPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFA 198 (1091)
Q Consensus 119 sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~ 198 (1091)
.++-|.=|+-||..+-+. +...-..++.-..+-.=+--+++.+|-+|+.++++-+- ..+..+.++|-+ .-.-
T Consensus 829 ~ialRtkAlKclS~ive~--Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl-----~~~e~~~qyY~~-i~er 900 (1692)
T KOG1020|consen 829 AIALRTKALKCLSMIVEA--DPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL-----SIPELIFQYYDQ-IIER 900 (1692)
T ss_pred hHHHHHHHHHHHHHHHhc--ChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh-----ccHHHHHHHHHH-HHhh
Confidence 455555599999977664 22223344443333333334689999999999998765 346788999996 4445
Q ss_pred ccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCCh
Q 001368 199 IVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIA 246 (1091)
Q Consensus 199 ~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~ 246 (1091)
+.|.+..||--+++.+..+..++ .||..+...|.|-+--.++
T Consensus 901 IlDtgvsVRKRvIKIlrdic~e~------pdf~~i~~~cakmlrRv~D 942 (1692)
T KOG1020|consen 901 ILDTGVSVRKRVIKILRDICEET------PDFSKIVDMCAKMLRRVND 942 (1692)
T ss_pred cCCCchhHHHHHHHHHHHHHHhC------CChhhHHHHHHHHHHHhcc
Confidence 88999999999999999999887 6888899999888766554
No 137
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=52.65 E-value=20 Score=28.91 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=37.1
Q ss_pred HHhHHhhhcccCccchhhHHHHHHHhhcCCChHHHHHHHHH
Q 001368 991 RFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVST 1031 (1091)
Q Consensus 991 ~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aAv~c 1031 (1091)
+|+-++.-..|.-.+-+.....+...|..+++..|+||++-
T Consensus 1 k~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 1 KALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred ChHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 47788888999999999999999999999999999999874
No 138
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=50.54 E-value=59 Score=41.21 Aligned_cols=96 Identities=22% Similarity=0.164 Sum_probs=70.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhh
Q 001368 152 AAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELD 231 (1091)
Q Consensus 152 llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE 231 (1091)
+-+++...++.+|+.-|.++.-.-.|.|+ ..+.|++.- .+.+|-+-.||+||.-.+. |+--.|-|
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgn---nkair~lLh----~aVsD~nDDVrRaAVialG--------FVl~~dp~ 588 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGN---NKAIRRLLH----VAVSDVNDDVRRAAVIALG--------FVLFRDPE 588 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCc---hhhHHHhhc----ccccccchHHHHHHHHHhe--------eeEecChh
Confidence 33344445889999999998888777773 335555554 4688999999999976653 33334557
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 001368 232 NSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 232 ~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
.+.+..-=.-|+-|..||..+|=+||-..|-
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAG 619 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcC
Confidence 6777777778899999999999999987743
No 139
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=50.50 E-value=97 Score=30.24 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=52.5
Q ss_pred HHHHHhhhc--CCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCC
Q 001368 106 SSLQGFLSD--GKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGG 180 (1091)
Q Consensus 106 n~l~~iL~~--~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~ 180 (1091)
+...+.+.+ ||++..+|+ -++..+|+|.+..|.-+.+..|-++..+.-.+. ...+|..++.+....++.+..
T Consensus 14 ~~f~~~l~d~~g~~~~~ek~-~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 14 AVFSNILHDSSGKKPYNEKK-RALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHcCcccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCH
Confidence 455555553 345456676 599999999999998888888866655555554 345999999999998887773
No 140
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.13 E-value=2.8e+02 Score=35.53 Aligned_cols=103 Identities=11% Similarity=0.087 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcch
Q 001368 125 GAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSF 204 (1091)
Q Consensus 125 aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~ 204 (1091)
-++-|++-+-++|-+.+...- .+++|.|-.-..-.|..++.+|..+|. ..=.++|.|..+++...-...
T Consensus 318 lgLlam~KI~ktHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVs-------kkNl~eIVk~LM~~~~~ae~t 386 (877)
T KOG1059|consen 318 LGLLAMSKILKTHPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVS-------KKNLMEIVKTLMKHVEKAEGT 386 (877)
T ss_pred HHHHHHHHHhhhCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHhccch
Confidence 355555555555554443222 236666666666788888888887765 223566666655554322222
Q ss_pred HHHHHH-HHHHHHHHhhcCCCcccchhhhHHHHHHHh
Q 001368 205 VVRIAG-ARCLKAFAHIGGPCLGVGELDNSATHCVKA 240 (1091)
Q Consensus 205 ~Vr~aA-a~cL~~l~~~~~~~~~~~dlE~l~tl~~K~ 240 (1091)
.-|--- -+.+...... .|.+-+||||..++..-.
T Consensus 387 ~yrdell~~II~iCS~s--nY~~ItdFEWYlsVlveL 421 (877)
T KOG1059|consen 387 NYRDELLTRIISICSQS--NYQYITDFEWYLSVLVEL 421 (877)
T ss_pred hHHHHHHHHHHHHhhhh--hhhhhhhHHHHHHHHHHH
Confidence 222222 1222222222 577888999988887654
No 141
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.26 E-value=2.1e+02 Score=33.08 Aligned_cols=159 Identities=15% Similarity=0.112 Sum_probs=101.3
Q ss_pred HhhcCCcchhHHhHHHHHH-hhhcCCCC-ChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHH
Q 001368 92 IISKGDNISVYSRVSSLQG-FLSDGKKS-EPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALL 169 (1091)
Q Consensus 92 l~~~GD~~~lfdtvn~l~~-iL~~~K~~-sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~ 169 (1091)
.|-.-.....||+.+.-.. .++ +=++ +-..+.-++--+-.+-+-|-+++...+.+++-.+.|.+|+--+++=..+..
T Consensus 73 e~~~sk~l~~fd~p~~al~~~l~-~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~ 151 (334)
T KOG2933|consen 73 EYIVSKNLSPFDDPEAALKQALK-KLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACM 151 (334)
T ss_pred HHhhhcccCccCcHHHHHHHHHH-HhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 3444556667776665433 332 1111 122222344444455566668999999999999999999966665556667
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHH
Q 001368 170 LLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVR 249 (1091)
Q Consensus 170 ~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR 249 (1091)
+++.|....+.++++ ...+..++....+. +..-.||..|-+.|.+++++..| .-+ +..+. =.+...+..+|
T Consensus 152 t~~difs~ln~~i~~-~ld~lv~~Ll~ka~-~dnrFvreda~kAL~aMV~~vtp----~~~--L~~L~-~~~~~~n~r~r 222 (334)
T KOG2933|consen 152 TLADIFSSLNNSIDQ-ELDDLVTQLLHKAS-QDNRFVREDAEKALVAMVNHVTP----QKL--LRKLI-PILQHSNPRVR 222 (334)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhhc-ccchHHHHHHHHHHHHHHhccCh----HHH--HHHHH-HHHhhhchhhh
Confidence 899999999988865 56777776333333 34457899999999999998522 222 22222 22566777888
Q ss_pred HHHHHHHHHHH
Q 001368 250 DAFAEALGSLL 260 (1091)
Q Consensus 250 ~a~A~~Lg~lL 260 (1091)
.-++.|+....
T Consensus 223 ~~a~~~~~~~v 233 (334)
T KOG2933|consen 223 AKAALCFSRCV 233 (334)
T ss_pred hhhhccccccc
Confidence 87776665544
No 142
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=48.04 E-value=4.2 Score=39.41 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcchhhHHH
Q 001368 422 DSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLIT 460 (1091)
Q Consensus 422 ~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll~ 460 (1091)
++.|+.+|.||+..||+.||.-+-.+. |.....+|+
T Consensus 49 r~aLl~LL~hpn~~VRl~AA~~~L~~~---p~eA~~~Le 84 (106)
T PF09450_consen 49 RDALLPLLKHPNMQVRLWAAAHTLRYA---PEEARKVLE 84 (106)
T ss_dssp GGGGGGGGGSS-HHHHHHHHHTTTTT----HHHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhC---HHHHHHHHH
Confidence 678999999999999999997766666 665555554
No 143
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=47.62 E-value=3.8e+02 Score=30.22 Aligned_cols=174 Identities=13% Similarity=0.058 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHhhcCCcchhHH-hHHHHHHhhhcCC-CCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHh
Q 001368 79 RPVRHLASVAMGRIISKGDNISVYS-RVSSLQGFLSDGK-KSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLM 156 (1091)
Q Consensus 79 ~P~R~l~a~cla~l~~~GD~~~lfd-tvn~l~~iL~~~K-~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~l 156 (1091)
+.+|.-.=.||+.+...-++..|-+ .|+.+.++.. +| +|.+... .|+..+.++. ++.+--......++..+++..
T Consensus 13 ~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~-~rl~D~~~~~-~~l~gl~~L~-~~~~~~~~~~~~i~~~l~~~~ 89 (262)
T PF14500_consen 13 PIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFC-SRLDDHACVQ-PALKGLLALV-KMKNFSPESAVKILRSLFQNV 89 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHH-HHhccHhhHH-HHHHHHHHHH-hCcCCChhhHHHHHHHHHHhC
Q ss_pred cc--CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHH
Q 001368 157 KF--NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSA 234 (1091)
Q Consensus 157 K~--~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~ 234 (1091)
.. .....|+.+++.+..+++.-.... ...-.++.+.....+-+.|+..--.-+.+-+..+..+. |++...
T Consensus 90 ~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~-------~~~~~~ 161 (262)
T PF14500_consen 90 DVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF-------DISEFA 161 (262)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc-------ccchhH
Q ss_pred HHHHHhccC---------CChh---HHHHHHHHHHHHHHhc
Q 001368 235 THCVKAIED---------PIAS---VRDAFAEALGSLLALG 263 (1091)
Q Consensus 235 tl~~K~le~---------s~~~---vR~a~A~~Lg~lLa~~ 263 (1091)
.-.|.++.. +|+. ||.-..+.|-+.++.+
T Consensus 162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~ 202 (262)
T PF14500_consen 162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST 202 (262)
T ss_pred HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc
No 144
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=47.11 E-value=4.1e+02 Score=33.34 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcc
Q 001368 124 AGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFN---EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIV 200 (1091)
Q Consensus 124 ~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~---~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~ 200 (1091)
..++..|| .+| ++.++..+.+.+... +..+|..|+.+|.++.. ..++.+..-+|+ +++. .
T Consensus 508 ~~~LkaLg--------N~g--~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~----~~~~~v~~~l~~-I~~n--~ 570 (618)
T PF01347_consen 508 IVYLKALG--------NLG--HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK----HCPEKVREILLP-IFMN--T 570 (618)
T ss_dssp HHHHHHHH--------HHT---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG----T-HHHHHHHHHH-HHH---T
T ss_pred HHHHHHhh--------ccC--CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhh----cCcHHHHHHHHH-HhcC--C
Confidence 35666666 333 456777777777653 57799999999997522 222334444444 3332 2
Q ss_pred CcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHH
Q 001368 201 DKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEAL 256 (1091)
Q Consensus 201 Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~L 256 (1091)
.....||+||.-.| .... | ....+..++... -..+|.+|+..+-..|
T Consensus 571 ~e~~EvRiaA~~~l---m~~~-P--~~~~l~~i~~~l---~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 571 TEDPEVRIAAYLIL---MRCN-P--SPSVLQRIAQSL---WNEPSNQVASFVYSHL 617 (618)
T ss_dssp TS-HHHHHHHHHHH---HHT------HHHHHHHHHHH---TT-S-HHHHHHHHHHH
T ss_pred CCChhHHHHHHHHH---HhcC-C--CHHHHHHHHHHH---hhCchHHHHHHHHHhc
Confidence 36678999997544 3322 1 112333333322 2457888888775543
No 145
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=46.52 E-value=29 Score=26.39 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 001368 1009 HVQTLLSTLSSRQPILRHLAVSTLRHLIE 1037 (1091)
Q Consensus 1009 lV~~L~~~L~S~~~~Lr~aAv~cLrqL~q 1037 (1091)
-++.|...|.+++..+++.|+.+|++|..
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 46778888889999999999999999863
No 146
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.06 E-value=60 Score=39.99 Aligned_cols=97 Identities=23% Similarity=0.175 Sum_probs=72.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccch
Q 001368 150 IIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGE 229 (1091)
Q Consensus 150 ~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~d 229 (1091)
..+-+++-.-++.+||.-+.+++-.-.|.|+.. +.+++.- .+.+|-.=.||+||.-.|. |+--.|
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~---vv~~lLh----~avsD~nDDVrRAAViAlG--------fvc~~D 583 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGNLG---VVSTLLH----YAVSDGNDDVRRAAVIALG--------FVCCDD 583 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCcch---hHhhhhe----eecccCchHHHHHHHHhee--------eeEecC
Confidence 345555556789999999999999888888544 5666555 3678999999999964442 333344
Q ss_pred hhhHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 001368 230 LDNSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1091)
Q Consensus 230 lE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa 261 (1091)
-+.+....==..|+-|..||+.+|-+||-.++
T Consensus 584 ~~~lv~tvelLs~shN~hVR~g~AvaLGiaca 615 (926)
T COG5116 584 RDLLVGTVELLSESHNFHVRAGVAVALGIACA 615 (926)
T ss_pred cchhhHHHHHhhhccchhhhhhhHHHhhhhhc
Confidence 45566666667789999999999999998774
No 147
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=45.60 E-value=3e+02 Score=28.61 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 001368 145 LLETTIIAAKLMKFN-EEFVRQEALLLLQNALEGSGGSAAASAYSEAFR 192 (1091)
Q Consensus 145 ~~e~~~~llK~lK~~-~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K 192 (1091)
+|+....+++.+|+. +..+|.|+++.++- +| +.|+-.||.+-+
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGi----lG-ALDP~~~k~~~~ 51 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGI----LG-ALDPYKHKSIQK 51 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhh----cc-ccCcHHHhcccc
Confidence 688889999999984 57799999988876 66 567777775444
No 148
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=45.53 E-value=7.2e+02 Score=31.28 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001368 397 IAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALA 448 (1091)
Q Consensus 397 v~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~ 448 (1091)
-.|+++++..-... ...-..+.+...+-+++-.....||=.|+..||.+-
T Consensus 505 saAv~aLskf~ln~--~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 505 SAAVQALSKFALNI--SDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHhccCc--cccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 35555555432222 223356778889999999999999999999999875
No 149
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=45.26 E-value=7.3e+02 Score=31.24 Aligned_cols=361 Identities=15% Similarity=0.105 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHhhcCCCchh--hHHHHHHHHHHhhcCCcchhHHhHHHHHHhhh--cCCCCChHhHHHHHHHHHHHHHH
Q 001368 61 WQRKCEDALYSLLILGARRPV--RHLASVAMGRIISKGDNISVYSRVSSLQGFLS--DGKKSEPQKVAGAAQCLGELYRQ 136 (1091)
Q Consensus 61 ~Q~~l~~~L~~~l~~~~g~P~--R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~--~~K~~sp~~~~aA~~cLG~l~~~ 136 (1091)
.|+.+-+...+-.+.+|--|- |+++.+- ..+.+.|+.+.=-+.-|..-+|++ ..||. +=+. +++.. .
T Consensus 19 ~~~t~~qd~~~sfn~Spvs~r~~r~lls~l-~yll~tge~f~e~~at~lff~i~KlFQhkd~-~Lrq--~VY~a---I-- 89 (898)
T COG5240 19 TERTLLQDMNESFNKSPVSTRSARKLLSNL-FYLLSTGELFPEATATNLFFAILKLFQHKDL-YLRQ--CVYSA---I-- 89 (898)
T ss_pred hHHHHHHHHHHHhccCCCChHHHHHHHHHH-HHHHhccccchhhHHHHHHHHHHHHHhcCCh-HHHH--HHHHH---H--
Confidence 345555555555677765444 8888775 455567888877777777777776 23442 2222 22211 1
Q ss_pred HhhHHhhcHHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHH
Q 001368 137 FGRRITSGLLETTIIAAKLMKF----NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGAR 212 (1091)
Q Consensus 137 ~G~~l~s~~~e~~~~llK~lK~----~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~ 212 (1091)
+.++...++...+.--.||. .+..+|.-+++.|-.++- +...-|+-| ..+++.-|+.+++|-||.-
T Consensus 90 --kelS~~tedvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid-------~~tv~~~er-~l~~a~Vs~~~a~~saalv 159 (898)
T COG5240 90 --KELSKLTEDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVID-------GETVYDFER-YLNQAFVSTSMARRSAALV 159 (898)
T ss_pred --HHHhhcchhhhHHHHHHHHhhccCCccccccHHHHHHHHhcC-------cchhhhHHH-HhhhhccccchhhhhhHHH
Confidence 13444455554444444553 466799999998888654 344556667 5788899999999988863
Q ss_pred HHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHh
Q 001368 213 CLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHL 292 (1091)
Q Consensus 213 cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~L 292 (1091)
.-..|.... ++ .+|+-.-+.=-+++-..+.|-.+.. .|-.|.....+.=-++. +|
T Consensus 160 ~aYhLlp~~--------~~---------------~~~rw~ne~qeav~~l~q~p~~~~n-~gy~Pn~~~isqYHalG-lL 214 (898)
T COG5240 160 VAYHLLPNN--------FN---------------QTKRWLNETQEAVLDLKQFPNQHGN-EGYEPNGNPISQYHALG-LL 214 (898)
T ss_pred Hhhhhcccc--------HH---------------HHHHHHHHHHHHHhhHhhCcCccCC-cccCCCCChHHHHHHHH-HH
Confidence 333333321 11 1222222222222223344432110 01111111001001111 11
Q ss_pred hhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCc
Q 001368 293 ALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTE 372 (1091)
Q Consensus 293 s~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE 372 (1091)
. . .|+ -+ .--...+++++.++.++.+. .+.|. |=..+.+.|.|
T Consensus 215 y-----q----~kr---------------~d----------kma~lklv~hf~~n~smknq-~a~V~--lvr~~~~ll~~ 257 (898)
T COG5240 215 Y-----Q----SKR---------------TD----------KMAQLKLVEHFRGNASMKNQ-LAGVL--LVRATVELLKE 257 (898)
T ss_pred H-----H----Hhc---------------cc----------HHHHHHHHHHhhcccccccc-hhhee--hHHHHHHHHHh
Confidence 1 0 000 00 00111234444433322221 11111 11122346667
Q ss_pred HHH-HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHH--hCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 001368 373 PTQ-RSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKT--LGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAE 449 (1091)
Q Consensus 373 ~~Q-~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~--LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~ 449 (1091)
..| ...++-+++.|-+....- .--|.+.++.. +-...+++.++....|-..|..|....|..|-..|..++.
T Consensus 258 n~q~~~q~rpfL~~wls~k~em-----V~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam 332 (898)
T COG5240 258 NSQALLQLRPFLNSWLSDKFEM-----VFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAM 332 (898)
T ss_pred ChHHHHHHHHHHHHHhcCcchh-----hhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 777 455555555553321110 01122223333 2236677888888899999999999999999999999998
Q ss_pred hCCcchhhHHHHHHHHHHhhhhhhccccCCcccchhhhhchHHHHHHHHHhhcCCCCCccCCchhHHHHHHHHHHhhccC
Q 001368 450 VDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESS 529 (1091)
Q Consensus 450 a~P~~~~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~alAALl~~~~~~pLgvp~~~~~~V~~~A~~LLk~~~ 529 (1091)
.-|..+ .-|=..++.+... .. +.+. .+||..|+...... -+.+.++.-..++---+
T Consensus 333 ~~P~kv----~vcN~evEsLIsd-------~N----r~Is--tyAITtLLKTGt~e-------~idrLv~~I~sfvhD~S 388 (898)
T COG5240 333 KYPQKV----SVCNKEVESLISD-------EN----RTIS--TYAITTLLKTGTEE-------TIDRLVNLIPSFVHDMS 388 (898)
T ss_pred hCCcee----eecChhHHHHhhc-------cc----ccch--HHHHHHHHHcCchh-------hHHHHHHHHHHHHHhhc
Confidence 888633 3444444444321 11 1122 35677888775533 34555555555554444
Q ss_pred CC
Q 001368 530 RN 531 (1091)
Q Consensus 530 ~~ 531 (1091)
.+
T Consensus 389 D~ 390 (898)
T COG5240 389 DG 390 (898)
T ss_pred cC
Confidence 44
No 150
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.21 E-value=2.7e+02 Score=37.12 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhhc-------CCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHH
Q 001368 82 RHLASVAMGRIISK-------GDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQF 137 (1091)
Q Consensus 82 R~l~a~cla~l~~~-------GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~ 137 (1091)
|.-++-||+.|+.. |-+-.-+| +|..+|+ |..|+.|+||+..||.+....
T Consensus 617 rQW~~icLG~LW~d~~~Arw~G~r~~Ahe---kL~~~Ls---D~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 617 RQWLCICLGRLWEDYDEARWSGRRDNAHE---KLILLLS---DPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHHHHHHhhhcchhhhccccccHHH---HHHHHhc---CccHHHHHHHHHHHHHHhccc
Confidence 88888888888875 33333344 6666665 678999999999999876653
No 151
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=44.94 E-value=9.4e+02 Score=32.44 Aligned_cols=141 Identities=18% Similarity=0.155 Sum_probs=101.9
Q ss_pred CCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHh
Q 001368 77 ARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLM 156 (1091)
Q Consensus 77 ~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~l 156 (1091)
.+--+|+-+|+-++++-++-..-..=++|....++.+ .-.++..-|+|+-.|++|- .-|=.+.+..++++..++|.+
T Consensus 353 ~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~--p~e~~~aWHgacLaLAELA-~rGlLlps~l~dVvplI~kaL 429 (1133)
T KOG1943|consen 353 TDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFN--PAEDDSAWHGACLALAELA-LRGLLLPSLLEDVVPLILKAL 429 (1133)
T ss_pred CcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcC--cCCchhHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHh
Confidence 4566799999999999999765555566677777554 2224566689999998774 467788899999999999988
Q ss_pred cc--------CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Q 001368 157 KF--------NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHI 220 (1091)
Q Consensus 157 K~--------~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~ 220 (1091)
-- .-..+|-++....=+.-++-..+.-+.+...+.-...=.|+=|+...+|+||...+.+++..
T Consensus 430 ~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 430 HYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 53 22458888887777777765544323344434443344467899999999998888887654
No 152
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=43.56 E-value=1.6e+02 Score=33.83 Aligned_cols=118 Identities=10% Similarity=0.009 Sum_probs=68.2
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCchhhHH-------HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcchhh----HH
Q 001368 391 ASPFMKIAALRTLSYTLKTLGEVPSEFKE-------VLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSG----LI 459 (1091)
Q Consensus 391 ~s~~~lv~aL~el~~Ll~~LGsa~~~~~~-------~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~~~~----ll 459 (1091)
.++.++-..|..++.++..-.+-..-+.+ ....++++++.++...++..|+..|-.++...|..... .+
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l 148 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL 148 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 34556667788888888776654433222 26789999999999999999999999999998887775 56
Q ss_pred HHHHHHHHhhhhhhccccCCcccchhhhhchHHHHHHHHHhhcCCCCCccCCchhHHHH
Q 001368 460 TYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVL 518 (1091)
Q Consensus 460 ~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~alAALl~~~~~~pLgvp~~~~~~V~ 518 (1091)
...+..|....+. . ..+-...-..+++.|+..-..+..+.-.+....++
T Consensus 149 ~~ll~~L~~~l~~---------~-~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~ 197 (312)
T PF03224_consen 149 PKLLQWLSSQLSS---------S-DSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLF 197 (312)
T ss_dssp HHHHHHHH-TT-H---------H-HH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhhcC---------C-CcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHH
Confidence 6666666543211 0 01111333456667776655555555533333333
No 153
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=43.29 E-value=1.2e+02 Score=34.69 Aligned_cols=108 Identities=11% Similarity=0.123 Sum_probs=64.3
Q ss_pred HHHHHhc--cCcHHHHHHHHHHHHHHHhcCCCCCchhHHH-------HHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q 001368 151 IAAKLMK--FNEEFVRQEALLLLQNALEGSGGSAAASAYS-------EAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 151 ~llK~lK--~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~-------di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
.++++++ ++....+..++..+..++..-.. ..+.++. +.|...+| .+.-.+..++..|+.++..+...+
T Consensus 59 ~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~-~~~~~~~~~~~~~~~~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 59 LFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPS-RVELFLELAKQDDSDPYSPFLK-LLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp ---HHHHHH---HHHHHHHHHHHHHHHH-SSS-SHHHHHHHHH-TTH--HHHHHH-H-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHhcccccchhHHHHHH-HhcCCCHHHHHHHHHHHHHHHHcC
Confidence 3334443 34677888999999999986653 3233333 36776666 355578999999999999999886
Q ss_pred CCCccc---chhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 222 GPCLGV---GELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 222 ~~~~~~---~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
+..... ..+..+....-+-+.+++.++...+.++|++++
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 222222 345555555555555577778899999999999
No 154
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=43.24 E-value=2.3e+02 Score=34.61 Aligned_cols=137 Identities=19% Similarity=0.169 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhc-------------CCCCChHhHHHHHHHHHHHHHH-----------
Q 001368 81 VRHLASVAMGRIISKGDNISVYSRVSSLQGFLSD-------------GKKSEPQKVAGAAQCLGELYRQ----------- 136 (1091)
Q Consensus 81 ~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~-------------~K~~sp~~~~aA~~cLG~l~~~----------- 136 (1091)
+|.-.-.||..+...-+++.+|- .-..++-+ -||.+|+.++-|+.++.++.+-
T Consensus 12 vr~~al~~~~~~~~~~~~~~~yg---yw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 12 VRQGALVCFLSTIKSIEKKVLYG---YWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHhhHHHHHHHHHhhhhhhhhhc---eeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 34445566666666666666664 22222222 3677888888899999887652
Q ss_pred -------HhhHHhhcHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHHhccCcchHHH
Q 001368 137 -------FGRRITSGLLETTIIAAKLMK-FNEEFVRQEALLLLQNALEGSGGSA-AASAYSEAFRLIMRFAIVDKSFVVR 207 (1091)
Q Consensus 137 -------~G~~l~s~~~e~~~~llK~lK-~~~a~~R~~~l~~L~kil~g~g~~~-~~~~~~di~K~~~r~~~~Dks~~Vr 207 (1091)
|.-|+.++.-+.-.+++-.+- ...+++-+.++++|+..+...-=.- .-...-++|.+ .|-....++.+||
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~-ik~~i~~~d~~v~ 167 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQ-IKPYIRHKDVNVR 167 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHhhcCCCChh
Confidence 122333333333334443333 2456777899999999887543100 13466788886 5666788999999
Q ss_pred HHHHHHHHHHHhhc
Q 001368 208 IAGARCLKAFAHIG 221 (1091)
Q Consensus 208 ~aAa~cL~~l~~~~ 221 (1091)
+++.-.+..++...
T Consensus 168 vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 168 VSSLTLLGAIVSTH 181 (728)
T ss_pred hHHHHHHHHHHhcC
Confidence 99998998888754
No 155
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=41.83 E-value=36 Score=35.50 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=41.6
Q ss_pred CcchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 201 DKSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 201 Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
++...+...+.+|+.++.++. ..+ .--+-......+...+++++..||..+.+.|+.+.
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~-~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTK-YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSH-HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccH-HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 577788888999999999874 222 11111234567778899999999999999998764
No 156
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=41.21 E-value=34 Score=28.18 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=28.0
Q ss_pred chhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 228 GELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 228 ~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
.|+|-++++.+|++++++...|......+|.+|
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL 35 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLL 35 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence 578899999999999999999999999999988
No 157
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=40.68 E-value=1.3e+02 Score=35.71 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=56.2
Q ss_pred hHHHHHhHHhhhc--ccCccchhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccCchhhhhhchHHHHHH
Q 001368 987 KWSVRFTQQLVLF--APQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFH 1054 (1091)
Q Consensus 987 ~eai~clQqL~lF--AP~~v~~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a~~v~~~~le~~Lf~ 1054 (1091)
.+|+++...+.-+ +|+.++ ..+|+.+..-...+...+|.+++++|.+|+-++|.-+.+.|--..|..
T Consensus 86 ~QALkliR~~l~~~~~~~~~~-~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~ 154 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKEIP-RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLR 154 (371)
T ss_pred HHHHHHHHHHHHhcCCcccCC-HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHH
Confidence 8999999999999 888886 568888888888899999999999999999999998876533333333
No 158
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.62 E-value=1.2e+02 Score=38.81 Aligned_cols=104 Identities=15% Similarity=0.045 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC
Q 001368 145 LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC 224 (1091)
Q Consensus 145 ~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~ 224 (1091)
...+++.++|-.+......|..|++++.. --.+.+..-+.. -.+.+++|+...||..|+-|...+....+..
T Consensus 84 a~~avnt~~kD~~d~np~iR~lAlrtm~~-------l~v~~i~ey~~~-Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~ 155 (734)
T KOG1061|consen 84 AILAVNTFLKDCEDPNPLIRALALRTMGC-------LRVDKITEYLCD-PLLKCLKDDDPYVRKTAAVCVAKLFDIDPDL 155 (734)
T ss_pred HHhhhhhhhccCCCCCHHHHHHHhhceee-------EeehHHHHHHHH-HHHHhccCCChhHHHHHHHHHHHhhcCChhh
Confidence 34466777777777788999888877543 223455555565 4667899999999999999999998876444
Q ss_pred cc-cchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 225 LG-VGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 225 ~~-~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
.+ .+-.|.+..+.. ++|+.|=-.+-.+|.++.
T Consensus 156 ~~~~gl~~~L~~ll~----D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLS----DSNPMVVANALAALSEIH 188 (734)
T ss_pred ccccchhHHHHHHhc----CCCchHHHHHHHHHHHHH
Confidence 44 455666777665 666655444444444544
No 159
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=39.79 E-value=62 Score=35.00 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCC
Q 001368 126 AAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSG 179 (1091)
Q Consensus 126 A~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g 179 (1091)
.+.+++.+|+++|..-...+..++..+-++-.+.+-.+|.++=.++++.++++|
T Consensus 20 vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amG 73 (198)
T PF08161_consen 20 VLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMG 73 (198)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCC
Confidence 678999999999999888888888888777776667899999999999999999
No 160
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=39.57 E-value=6.3e+02 Score=28.85 Aligned_cols=177 Identities=20% Similarity=0.144 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHH---------HhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHH
Q 001368 58 ILLWQRKCEDALYSLLILGARRPVRHLASVAMGR---------IISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQ 128 (1091)
Q Consensus 58 i~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~---------l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~ 128 (1091)
.+..|++--..||++=+.+-+.+ .+-+.+|+.. .|..|+..-- +.|+.+.+++. ..+..|-.||-|..
T Consensus 15 ~s~~l~~r~rALf~Lr~l~~~~~-i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-~Av~~l~~vl~-desq~pmvRhEAae 91 (289)
T KOG0567|consen 15 KSQPLQNRFRALFNLRNLLGPAA-IKAITKAFIDDSALLKHELAYVLGQMQDE-DAVPVLVEVLL-DESQEPMVRHEAAE 91 (289)
T ss_pred ccHHHHHHHHHHHhhhccCChHH-HHHHHHhcccchhhhccchhhhhhhhccc-hhhHHHHHHhc-ccccchHHHHHHHH
Confidence 55566666678887665544333 5555555532 2334443322 46788888886 22335777788999
Q ss_pred HHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCC--C--------CCc---hhHHHHHHHHHH
Q 001368 129 CLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSG--G--------SAA---ASAYSEAFRLIM 195 (1091)
Q Consensus 129 cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g--~--------~~~---~~~~~di~K~~~ 195 (1091)
|||+ ++ .++...++-|+.|.-...+|-....++.++=.+-+ + +.| +..-+++-+ +
T Consensus 92 alga--------~~--~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~--l 159 (289)
T KOG0567|consen 92 ALGA--------IG--DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHE--L 159 (289)
T ss_pred HHHh--------hc--chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHH--H
Confidence 9994 33 67788888888854333344333333333322111 1 111 223455555 2
Q ss_pred HHhccCcc--hHHHHHHHHHHHHHHhhcCCCcccchh--hhHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 001368 196 RFAIVDKS--FVVRIAGARCLKAFAHIGGPCLGVGEL--DNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 196 r~~~~Dks--~~Vr~aAa~cL~~l~~~~~~~~~~~dl--E~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
|..+.|.. ..=|. + +.|+..+. |.-.....+.+..++.--|+-+|-+||.+-..
T Consensus 160 r~~lld~t~~l~~Ry---~----------amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~ 217 (289)
T KOG0567|consen 160 RAELLDETKPLFERY---R----------AMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSP 217 (289)
T ss_pred HHHHHhcchhHHHHH---h----------hhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccch
Confidence 34455533 22222 1 22222222 66777778899999999999999999987543
No 161
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=39.48 E-value=5.3e+02 Score=27.94 Aligned_cols=173 Identities=12% Similarity=0.028 Sum_probs=105.0
Q ss_pred CChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCCh--HhHHHHHHHH
Q 001368 53 EPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEP--QKVAGAAQCL 130 (1091)
Q Consensus 53 ~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp--~~~~aA~~cL 130 (1091)
.+++.-+..|++.+.+.- ..|.+.|.|+-+++=+..=...+|.--+.+ .+..+.. +| +.+..|+..|
T Consensus 2 a~~~~a~~m~~y~k~~~~---f~Gv~~P~~R~lak~~~~~~~~~~~~~~~~---l~~~Lw~-----~~~~E~r~~al~~l 70 (208)
T cd07064 2 ADPERAAAMKAYMKNQFP---FYGIKTPERRALSKPFLKESKLPDKEELWE---LVLELWQ-----QPEREYQYVAIDLL 70 (208)
T ss_pred CCHHHHHHHHHHHhcCCc---cCCCChHHHHHHHHHHHHHcCCCcHHHHHH---HHHHHHc-----chHHHHHHHHHHHH
Confidence 467778888888888762 567888998888888765444443222222 2333443 45 4556777777
Q ss_pred HHHHHHHhhHHhhcHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHH
Q 001368 131 GELYRQFGRRITSGLLETTIIAAKLMKF--NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRI 208 (1091)
Q Consensus 131 G~l~~~~G~~l~s~~~e~~~~llK~lK~--~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~ 208 (1091)
...++.+... -+..+.++++. +=+.+=..+-..++..+. ..+.....+++- ..|..+=+|+
T Consensus 71 ~~~~~~~~~~-------~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~-----~~~~~~~~l~~W-----~~s~~~W~rR 133 (208)
T cd07064 71 RKYKKFLTPE-------DLPLLEELITTKSWWDTVDSLAKVVGGILLA-----DYPEFEPVMDEW-----STDENFWLRR 133 (208)
T ss_pred HHHHhcCCHH-------HHHHHHHHHcCCchHHHHHHHHHHHhHHHHh-----CChhHHHHHHHH-----HcCCcHHHHH
Confidence 7766544222 23445555554 323332222222222222 122222334443 4688889999
Q ss_pred HHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 209 AGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 209 aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
+|+-+.....+ .+|+|-+..+|-..+.++.+-++.|++=+|.++.
T Consensus 134 ~ai~~~l~~~~-------~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~ 178 (208)
T cd07064 134 TAILHQLKYKE-------KTDTDLLFEIILANLGSKEFFIRKAIGWALREYS 178 (208)
T ss_pred HHHHHHHHHHH-------ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Confidence 99866443333 3567778888999999999999999988888865
No 162
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=39.40 E-value=7e+02 Score=29.32 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHH-------HHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 001368 145 LLETTIIAAKLMKFNEEFVRQEAL-------LLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAF 217 (1091)
Q Consensus 145 ~~e~~~~llK~lK~~~a~~R~~~l-------~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l 217 (1091)
-+++...+++...+.+..+=+..| ..+.+++-- ++ .+|+ .++. ....++.|-.-|...+..+
T Consensus 123 ~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~-----~~----~f~~-ff~~-~~~~~Fdiasdaf~t~~~l 191 (335)
T PF08569_consen 123 RPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILY-----SE----CFWK-FFKY-VQLPNFDIASDAFSTFKEL 191 (335)
T ss_dssp -THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHT-----SG----GGGG-HHHH-TTSSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhC-----cH----HHHH-HHHH-hcCCccHhHHHHHHHHHHH
Confidence 377788888888765432222211 112222221 11 3555 3554 5678899988888888886
Q ss_pred Hhhc----CCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhh
Q 001368 218 AHIG----GPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLA 293 (1091)
Q Consensus 218 ~~~~----~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls 293 (1091)
...- +.|+ ...+|.+...+-+.++++||.||+-.=++||++|-...+. .+|.++.+
T Consensus 192 lt~hk~~~a~fl-~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~-------------------~vm~~yi~ 251 (335)
T PF08569_consen 192 LTRHKKLVAEFL-SNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNF-------------------NVMTRYIS 251 (335)
T ss_dssp HHSSHHHHHHHH-HHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGH-------------------HHHHHHTT
T ss_pred HhccHHHHHHHH-HHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHH-------------------HHHHHHHC
Confidence 6531 1233 5677888889999999999999999999999999554432 33333333
Q ss_pred hh--------hcccCCCCcchhHHHHHHHHHHHHHH
Q 001368 294 LP--------FTRANGAKSKNMRVNLTLSWVYFLQA 321 (1091)
Q Consensus 294 ~~--------f~r~~~~~~r~~R~Gv~~ayv~fl~~ 321 (1091)
++ -++. .++.+|.--++.+..|+..
T Consensus 252 ~~~nLkl~M~lL~d---~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 252 SPENLKLMMNLLRD---KSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp -HHHHHHHHHHTT----S-HHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHhcC---cchhhhHHHHHHHHHHHhC
Confidence 22 2233 5688998888888888876
No 163
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=39.35 E-value=62 Score=38.58 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=54.7
Q ss_pred HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhh-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 001368 377 SFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEF-KEVLDSTVVAAVSHSSQLVRIEAALTLRALAE 449 (1091)
Q Consensus 377 ~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~-~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~ 449 (1091)
++++.|++.++..+ .|.++-+|..-+|..++..-+.-.-+ .-+-++.++.++.||+..||.+|-.|...+..
T Consensus 366 ellkiL~~lLe~s~-Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSN-DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCC-CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 77777777665432 34478899999999999764433322 33578999999999999999999999877653
No 164
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=39.25 E-value=2.9e+02 Score=27.66 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=55.1
Q ss_pred HHHHHHHhhHHhhc---HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHH------HHHHHHHH-h--
Q 001368 131 GELYRQFGRRITSG---LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSE------AFRLIMRF-A-- 198 (1091)
Q Consensus 131 G~l~~~~G~~l~s~---~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~d------i~K~~~r~-~-- 198 (1091)
|.+|+..-++...+ +.++.--++|=|+..+.-+..-+|+.|..++.. |+ +.+.+. +.|+.... +
T Consensus 19 gy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~-G~---~~f~~~~~~~~~~Ik~~~~f~g~~ 94 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEK-GN---SDFKRELQRNSAQIRECANYKGPP 94 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhh-CC---HHHHHHHHHhHHHHHHHHHcCCCC
Confidence 34455444444433 557777788888777788888999999998884 32 333333 33321111 1
Q ss_pred ---ccC-cchHHHHHHHHHHHHHHhh
Q 001368 199 ---IVD-KSFVVRIAGARCLKAFAHI 220 (1091)
Q Consensus 199 ---~~D-ks~~Vr~aAa~cL~~l~~~ 220 (1091)
.+| -...||.+|-+|+..++..
T Consensus 95 Dp~~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 95 DPLKGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred CcccCcchhHHHHHHHHHHHHHHhcc
Confidence 122 5678999999999988875
No 165
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=38.06 E-value=48 Score=27.45 Aligned_cols=32 Identities=6% Similarity=0.181 Sum_probs=29.1
Q ss_pred chhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 228 GELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 228 ~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
.|+|-++.+.+|+|++.+.. |......+|.+|
T Consensus 2 ~n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL 33 (46)
T smart00755 2 ANFEYLKNVLLQFLTLRESE-RETLLKVISTVL 33 (46)
T ss_pred ccHHHHHHHHHHHhccCcch-HHHHHHHHHHHh
Confidence 57899999999999999987 999999999888
No 166
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.78 E-value=2.5e+02 Score=38.84 Aligned_cols=112 Identities=18% Similarity=0.120 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcC--CcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHH
Q 001368 64 KCEDALYSLLILGARRPVRHLASVAMGRIISKG--DNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRI 141 (1091)
Q Consensus 64 ~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~G--D~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l 141 (1091)
-++.|+.+ .+..++-.+.....-.+.+++.+ |.-.++. ..+.+++...++++..+..|+..+-.+|++.|...
T Consensus 1502 p~v~ql~n--~~~e~~~~~~v~~~li~~i~~~~~a~~~d~~p---l~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~ 1576 (1621)
T KOG1837|consen 1502 PLVSQLVN--VLLEFYASDIVSKLLIAEIASDSVADKDDLKP---LNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENV 1576 (1621)
T ss_pred hhHHHHHH--hhccchhhhHHHHHHHHHHHhhccCChhhhHH---HHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchh
Confidence 35555554 23444444555444445555432 2222555 55667765557788888899999999999999999
Q ss_pred hhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCC
Q 001368 142 TSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGG 180 (1091)
Q Consensus 142 ~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~ 180 (1091)
.++.++++..+.+++---+.++-+.+-...+-+=+.+|.
T Consensus 1577 ~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1577 IVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred HHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 999999999999999886666666665544444444553
No 167
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=37.39 E-value=3.7e+02 Score=27.86 Aligned_cols=125 Identities=14% Similarity=-0.001 Sum_probs=70.2
Q ss_pred HHHhhhccCCCCchHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhc--CCcchh
Q 001368 24 SIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISK--GDNISV 101 (1091)
Q Consensus 24 ~~~~~~~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~--GD~~~l 101 (1091)
.++..+..++..--..=..+..+.+..+..-+.-+...|..++..+.. ....-.-.+....+.++.+|.. .+...+
T Consensus 40 ~i~~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~~~~~f~~~~e~--~~~~~~~~~~~~i~fl~eL~~~~~i~~~~i 117 (200)
T smart00543 40 LIFEKAVEEPNFIPAYARLCALLNAKNPDFGSLLLERLQEEFEKGLES--EEESDKQRRLGLVRFLGELYNFQVLTSKII 117 (200)
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHhHHHHHHHHHHcccCcHHHH
Confidence 344444444433333344555555555544444555555555443211 1111222366788999998875 566789
Q ss_pred HHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHh-hcHHHHHHHHH
Q 001368 102 YSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRIT-SGLLETTIIAA 153 (1091)
Q Consensus 102 fdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~-s~~~e~~~~ll 153 (1091)
|+.++.+..-.. ..+ .+... =.+.|+..+...-|..+. .-.++.+..++
T Consensus 118 ~~~l~~ll~~~~-~~~-~~~~~-~~ve~l~~lL~~~G~~l~~~~~~~~~~~~l 167 (200)
T smart00543 118 LELLKELLNDLT-KLD-PPRSD-FSVECLLSLLPTCGKDLEREKSPKLLDEIL 167 (200)
T ss_pred HHHHHHHHhccC-CCC-CCCcH-HHHHHHHHHHHHhhHHHcCcccHHHHHHHH
Confidence 997777777654 111 22222 377888899998888887 34444433333
No 168
>COG2733 Predicted membrane protein [Function unknown]
Probab=37.23 E-value=8e+02 Score=29.43 Aligned_cols=198 Identities=12% Similarity=0.051 Sum_probs=94.8
Q ss_pred cCCCCchHHHHHHHH--------------HHHhhccCChhhHHHHHHHHHHHHHHHhhcC-CCchhhHHHHHHHHHHhhc
Q 001368 31 QQSPDPLLCFDLLSD--------------LISAIDEEPKESILLWQRKCEDALYSLLILG-ARRPVRHLASVAMGRIISK 95 (1091)
Q Consensus 31 ~~~~~~~~~f~~L~~--------------L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~-~g~P~R~l~a~cla~l~~~ 95 (1091)
++..=+.++-+|+.. +.+.+...+.++++..- ++...+-|... -+|| +|+-|..++..
T Consensus 106 ~~~~~a~~igewls~~en~~~v~~~t~~l~~~~~~lld~~~iq~~i---k~~v~~~i~e~~~~~~----~~~vL~~l~~d 178 (415)
T COG2733 106 RRADIASRIGEWLSQPENAQRVSQETLKLLSQLLELLDDDDIQRVI---KRAVIRAIAEVYLGPT----AGRVLESLTAD 178 (415)
T ss_pred HhcCHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhCHHHHHHHH---HHHHHHHHhcccccch----HHHHHHHHHhc
Confidence 344446677777765 33566677777775544 44555444433 3344 56777788877
Q ss_pred CCcchhHHhHHHHHHhhhcC-CCCChHhHHHHHHHHHHHHHHHhhHHhhcHHH--HHHHHHHHhccCcHHHHHHHHHHHH
Q 001368 96 GDNISVYSRVSSLQGFLSDG-KKSEPQKVAGAAQCLGELYRQFGRRITSGLLE--TTIIAAKLMKFNEEFVRQEALLLLQ 172 (1091)
Q Consensus 96 GD~~~lfdtvn~l~~iL~~~-K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e--~~~~llK~lK~~~a~~R~~~l~~L~ 172 (1091)
+---.++| ++.++|... +++.+.+. .+.+.---+=+..+ .+.. +++.+.| . . ++.+.+..+.
T Consensus 179 ~r~q~l~D---~~~~~L~r~~~~~~v~~~-i~~~i~r~~~ee~p-----~f~~~~~~~~v~~---~--~-I~~a~~~~~D 243 (415)
T COG2733 179 DRHQALLD---KLIDRLIRWLLNDKVREF-IAAVIVRYLEEEHP-----LFAPIIIVSLVGK---R--D-ISDAVNSFLD 243 (415)
T ss_pred ccHHHHHH---HHHHHHHHHhhhhhhHHH-HHHHHHHHHHhcCc-----cchhhhhHHHHhh---c--h-HHHHHHHHHH
Confidence 66567887 666666521 12223222 12111111112222 1110 0111111 0 1 4445555555
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchh--------hhHHHHHHHhccCC
Q 001368 173 NALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGEL--------DNSATHCVKAIEDP 244 (1091)
Q Consensus 173 kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dl--------E~l~tl~~K~le~s 244 (1091)
.+.+.=.-.+..+..|-+.+.+-|- .+|.++.-|.-+.+ .-+..+ +++ ..+.....+-.|++
T Consensus 244 ~v~~~p~h~~rk~~~R~~~~~i~~L-~~Dp~~~~r~e~iK---~~~~~~------~~i~~~~~~~w~~~~~~l~~D~e~~ 313 (415)
T COG2733 244 EVRRDPDHKMRKDFDRFLFDLIDDL-YHDPGMAARAEAIK---SYLKED------EAIATAAGDMWTSLSEWLKEDYESE 313 (415)
T ss_pred HHHhCcCccchHHHHHHHHHHHHHH-hcCHHHHHHHHHHH---HHHhcC------hHHHHHHHHHHHHHHHHHHhcccCc
Confidence 5555111111233344333333232 45555555533322 111111 222 23344455566889
Q ss_pred ChhHHHHHHHHHHHHH
Q 001368 245 IASVRDAFAEALGSLL 260 (1091)
Q Consensus 245 ~~~vR~a~A~~Lg~lL 260 (1091)
++-+|...++++-.+-
T Consensus 314 ~s~l~~~l~~~~~~~G 329 (415)
T COG2733 314 DSMLRKRLARAVQSVG 329 (415)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999998888876655
No 169
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=36.24 E-value=2.5e+02 Score=27.38 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCc-chhhHHHHHHHHH
Q 001368 396 KIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPT-CVSGLITYGVTTL 466 (1091)
Q Consensus 396 lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~-~~~~ll~~~~~~L 466 (1091)
-.-+++.++.+|+--|.......-++.-.|.+.|..|. .|-.|-.|.++|....+. .+.++++..+-.+
T Consensus 32 k~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 32 KKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTLKEEELGPLLDQIFAAI 101 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 56899999999997777666777788888888888775 999999999999998876 7777777665544
No 170
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=35.83 E-value=6.2e+02 Score=28.46 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCch
Q 001368 355 LACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQ 434 (1091)
Q Consensus 355 r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~ 434 (1091)
+.|+..++++++...+....|...++.|.+ +...+...|++.- .+..++.=|.+.....+....-.|..+-..|..
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~n-Ltv~~~~~~~l~~---~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~ 167 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTN-LTVTNDYHHMLAN---YIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM 167 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHc-cCCCcchhhhHHh---hHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH
Confidence 478999999999878888999888888887 3333444454443 344555555555555666677788888888888
Q ss_pred HHHHHHHHHHHHHHHhCCc-chhhHHHHHHHHHHhhhhhh
Q 001368 435 LVRIEAALTLRALAEVDPT-CVSGLITYGVTTLNALRENV 473 (1091)
Q Consensus 435 svRi~AA~cLr~~~~a~P~-~~~~ll~~~~~~L~~~~~~l 473 (1091)
+-.+-.+.++..|..-+-. ....++.+.++..+...+..
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 8888888888888755444 35666666666666665543
No 171
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.15 E-value=1.3e+03 Score=31.25 Aligned_cols=133 Identities=20% Similarity=0.084 Sum_probs=83.3
Q ss_pred CCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHH--HHHHHHhc----cCcHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Q 001368 116 KKSEPQKVAGAAQCLGELYRQFGRRITSGLLETT--IIAAKLMK----FNEEFVRQEALLLLQNALEGSGGSAAASAYSE 189 (1091)
Q Consensus 116 K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~--~~llK~lK----~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~d 189 (1091)
+|-+|..|+-.+.-||.-++. +|+.+ ...+|++. -.+.++|-..+++|.+..+.-. +....+.
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~--------yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~---~~~~L~l 365 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKS--------YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDE---DKDKLEL 365 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHh--------ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccc---cchHHHH
Confidence 577899996444444444433 33332 23566654 2689999999999999998722 1222333
Q ss_pred H---HHH-HHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccC
Q 001368 190 A---FRL-IMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMN 265 (1091)
Q Consensus 190 i---~K~-~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~ 265 (1091)
+ +|. +..-+--|.+..||.++...+..+...+ ++...|++.+-.+++ +++..+|.++..-+=.-+.....
T Consensus 366 FtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g--~L~d~di~~Vy~Li~----d~~r~~~~aa~~fl~~k~~~~~a 439 (1048)
T KOG2011|consen 366 FTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSG--LLSDKDILIVYSLIY----DSNRRVAVAAGEFLYKKLFERVA 439 (1048)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhccc--ccChhHHHHHHHHHh----ccCcchHHHHHHHHHHHhhcccc
Confidence 3 332 3333334567788888866555555543 778888887776654 68888888887776655544333
No 172
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=35.06 E-value=75 Score=39.74 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=58.1
Q ss_pred cCccchhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccC-chhhhhhchHHHHHHhhccCCCHH----------HHHHHH
Q 001368 1001 PQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKD-PDSVIEERIEGNLFHMLDEETDSE----------YVKSYT 1069 (1091)
Q Consensus 1001 P~~v~~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~-a~~v~~~~le~~Lf~~LD~e~d~~----------l~~~~~ 1069 (1091)
|..+...++|..|+....+.++.+|.+|.++|+.++.+. -....-.|+-.-+|. +|+..-.. +.++++
T Consensus 464 ~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p~~~~vi~~Fa~Fif~-~~d~~~~~~~~~~l~~~~~~~~L~ 542 (552)
T PF14222_consen 464 PSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKPNRQQVITGFARFIFR-FDDKYPSMYDGGYLGSGEIESLLK 542 (552)
T ss_pred CCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHee-CcccCccchhhhccchHHHHHHHH
Confidence 667888999999999999999999999999999999998 444444788888998 66666555 666655
Q ss_pred HHhhh
Q 001368 1070 LCLAY 1074 (1091)
Q Consensus 1070 ~~~~~ 1074 (1091)
+-.+.
T Consensus 543 lyveL 547 (552)
T PF14222_consen 543 LYVEL 547 (552)
T ss_pred HHHHH
Confidence 54443
No 173
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.81 E-value=1.1e+03 Score=30.42 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=130.4
Q ss_pred cCCCCchHHHHHHHHHHHhhcc------------------CChhhHHHHHHHHHHHHHHHhhcC---------CCchhhH
Q 001368 31 QQSPDPLLCFDLLSDLISAIDE------------------EPKESILLWQRKCEDALYSLLILG---------ARRPVRH 83 (1091)
Q Consensus 31 ~~~~~~~~~f~~L~~L~~~l~~------------------~~k~di~~~Q~~l~~~L~~~l~~~---------~g~P~R~ 83 (1091)
++.||-+-.=+|.+.....|.. -.+++-|.+-...+..|.++.... -+-|.=+
T Consensus 177 r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 177 RKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred hcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence 5566766666777765554433 344555666666666666655422 1123333
Q ss_pred HH---HHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCC-----ChHhHHHHHHHHHHHHHHH-----hhHHhhcHHHHHH
Q 001368 84 LA---SVAMGRIISKGDNISVYSRVSSLQGFLSDGKKS-----EPQKVAGAAQCLGELYRQF-----GRRITSGLLETTI 150 (1091)
Q Consensus 84 l~---a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~-----sp~~~~aA~~cLG~l~~~~-----G~~l~s~~~e~~~ 150 (1091)
|. -|-|-..=..-|+...-...+-++.||+ +.++ .+... .|-. +-+||.. =+.=-+.+.-.|.
T Consensus 257 L~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLn-k~~~~~~~k~vq~~-na~n--aVLFeaI~l~~h~D~e~~ll~~~~~ 332 (938)
T KOG1077|consen 257 LQVKLLRLLQIYPTPEDPSTRARLNEVLERILN-KAQEPPKSKKVQHS-NAKN--AVLFEAISLAIHLDSEPELLSRAVN 332 (938)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHh-ccccCccccchHhh-hhHH--HHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 32 2222222334677776667777778886 2121 12211 1111 1223321 1222244556677
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchh
Q 001368 151 IAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGEL 230 (1091)
Q Consensus 151 ~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dl 230 (1091)
.+.+.+-.-|...||-++..+.+.+. ++-+. +. .|.=-.+++.+--++|+..||.=|.+-|..+-... +-
T Consensus 333 ~Lg~fls~rE~NiRYLaLEsm~~L~s-s~~s~-da-vK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~-------Na 402 (938)
T KOG1077|consen 333 QLGQFLSHRETNIRYLALESMCKLAS-SEFSI-DA-VKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS-------NA 402 (938)
T ss_pred HHHHHhhcccccchhhhHHHHHHHHh-ccchH-HH-HHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh-------hH
Confidence 77777777899999999999998877 45444 22 33333447777666999999999999988776653 33
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHHHHHHHhcc
Q 001368 231 DNSATHCVKAIEDPIASVRDAFAEALGSLLALGM 264 (1091)
Q Consensus 231 E~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~ 264 (1091)
.-++.=.+..++.++|..|.-.+--.|- |+..+
T Consensus 403 k~IV~elLqYL~tAd~sireeivlKvAI-LaEKy 435 (938)
T KOG1077|consen 403 KQIVAELLQYLETADYSIREEIVLKVAI-LAEKY 435 (938)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHH-HHHHh
Confidence 4567777888999999999877766553 33434
No 174
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.74 E-value=1.2e+03 Score=30.61 Aligned_cols=348 Identities=13% Similarity=0.081 Sum_probs=180.1
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhc
Q 001368 65 CEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSG 144 (1091)
Q Consensus 65 l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~ 144 (1091)
+-.++.++++. +-|-+||=++.|..++..+ ++-.+=-=++.....|+ ++.+-..+|.++.+.++-+.--+ ..+.
T Consensus 143 lapeVe~Ll~~-~~~~irKKA~Lca~r~irK-~P~l~e~f~~~~~~lL~---ek~hGVL~~~l~l~~e~c~~~~~-~l~~ 216 (866)
T KOG1062|consen 143 LAPEVERLLQH-RDPYIRKKAALCAVRFIRK-VPDLVEHFVIAFRKLLC---EKHHGVLIAGLHLITELCKISPD-ALSY 216 (866)
T ss_pred hhHHHHHHHhC-CCHHHHHHHHHHHHHHHHc-CchHHHHhhHHHHHHHh---hcCCceeeeHHHHHHHHHhcCHH-HHHH
Confidence 33444444555 7788899999999999887 33222223455556665 33466667778888888775444 4477
Q ss_pred HHHHHHHHHHHhcc---------------CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccC--------
Q 001368 145 LLETTIIAAKLMKF---------------NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVD-------- 201 (1091)
Q Consensus 145 ~~e~~~~llK~lK~---------------~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~D-------- 201 (1091)
|.+.+..+.+.+|+ ..+.+-..+++.|+=. |-|....+..--||.-++++-+-+.
T Consensus 217 fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL--Gq~d~daSd~M~DiLaqvatntdsskN~GnAIL 294 (866)
T KOG1062|consen 217 FRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL--GQNDADASDLMNDILAQVATNTDSSKNAGNAIL 294 (866)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh--cCCCccHHHHHHHHHHHHHhcccccccchhHHH
Confidence 88888889998886 2467888888887642 2222223445667766655532222
Q ss_pred -----------cchHHHHHHHHHHHHHHhhcCC---Ccc-----------cchhhhHHHHHHHhccCCChhHHHHHHHHH
Q 001368 202 -----------KSFVVRIAGARCLKAFAHIGGP---CLG-----------VGELDNSATHCVKAIEDPIASVRDAFAEAL 256 (1091)
Q Consensus 202 -----------ks~~Vr~aAa~cL~~l~~~~~~---~~~-----------~~dlE~l~tl~~K~le~s~~~vR~a~A~~L 256 (1091)
.....|..|++||.....+..- |+. .+-.+.=...++-.++++|...|+-+=+++
T Consensus 295 YE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs 374 (866)
T KOG1062|consen 295 YECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELS 374 (866)
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 2234667777777655443101 110 011122233556666777777766665554
Q ss_pred HHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHH
Q 001368 257 GSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDY 336 (1091)
Q Consensus 257 g~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y 336 (1091)
=.+. ..++- +.+-++|..+| .. ...+.|+-++.-.+...-...+. -.=|
T Consensus 375 ~~lv-n~~Nv---------------~~mv~eLl~fL-----~~---~d~~~k~~~as~I~~laEkfaP~-------k~W~ 423 (866)
T KOG1062|consen 375 YALV-NESNV---------------RVMVKELLEFL-----ES---SDEDFKADIASKIAELAEKFAPD-------KRWH 423 (866)
T ss_pred HHHh-ccccH---------------HHHHHHHHHHH-----Hh---ccHHHHHHHHHHHHHHHHhcCCc-------chhH
Confidence 4433 21111 12223333333 33 24677777775555555444431 1223
Q ss_pred HHHHHHHhccCCCccHHHHHHHHHHHHHhh-h-ccCCcHHHHHHHHHHHhhcccCCCC----hhHHHHHHHHHHHHHHHh
Q 001368 337 ALQVMDMLRADIFVDSHALACVLYILRIGV-T-DQMTEPTQRSFLVFLGKQLQAVDAS----PFMKIAALRTLSYTLKTL 410 (1091)
Q Consensus 337 ~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i-~-~~LgE~~Q~~~~~~l~~~~~~~~~s----~~~lv~aL~el~~Ll~~L 410 (1091)
++.+...+....+. ..-..+.-++|-+= + +-+.|-+++.+-..+...- ..+.+ -++.+-++.|-|.|+-.=
T Consensus 424 idtml~Vl~~aG~~--V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~-~~~is~e~l~qVa~W~IGEYGdlll~~ 500 (866)
T KOG1062|consen 424 IDTMLKVLKTAGDF--VNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDT-LLDISQEPLLQVASWCIGEYGDLLLDG 500 (866)
T ss_pred HHHHHHHHHhcccc--cchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhh-hhhhhhhhHHHHHHHHhhhhhHHhhcC
Confidence 33333333311100 00011222222222 1 2233334443333333321 11222 234445788888766542
Q ss_pred C-CCch-h-hHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHhCCcc
Q 001368 411 G-EVPS-E-FKEVLDSTVVAAVSHS--SQLVRIEAALTLRALAEVDPTC 454 (1091)
Q Consensus 411 G-sa~~-~-~~~~l~d~l~~ll~hp--s~svRi~AA~cLr~~~~a~P~~ 454 (1091)
+ +.-+ . .-+.+.|.+..++.+- +..++-+|-.+|-.+..-+|++
T Consensus 501 ~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 501 ANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred ccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc
Confidence 2 2111 1 1233555555555443 2678888888888888888876
No 175
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=33.81 E-value=1.7e+02 Score=27.53 Aligned_cols=61 Identities=20% Similarity=0.095 Sum_probs=51.0
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccC--cchHHHHHHHHHHHHHHhhc
Q 001368 159 NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVD--KSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 159 ~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~D--ks~~Vr~aAa~cL~~l~~~~ 221 (1091)
+|-.+|..+=..+..|++.-|.+- +.....|.|+ ...++.| |++.++..|..+|.+|..+.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~-~~L~~Ri~~t-l~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSY-PTLQPRITRT-LLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999666 6678888886 5555665 88999999999999996653
No 176
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.12 E-value=1.5e+03 Score=31.03 Aligned_cols=173 Identities=13% Similarity=0.124 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhcCCCchhhHH--------HHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHH
Q 001368 63 RKCEDALYSLLILGARRPVRHL--------ASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELY 134 (1091)
Q Consensus 63 ~~l~~~L~~~l~~~~g~P~R~l--------~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~ 134 (1091)
++--.+|...|...-|.|.++. +|.=|+.+=. -=|+.+-.-++.+.+.+. + .+-.-+-+-+.++|.+-
T Consensus 265 ky~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~-~~P~l~~~~l~~lv~lld-~--es~~lRnavlei~~n~V 340 (1251)
T KOG0414|consen 265 KYGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSE-RVPKLMLRQLTLLVDLLD-S--ESYTLRNAVLEICANLV 340 (1251)
T ss_pred hcccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHH-HhHHHHHHHHHHHHHhcC-C--chHHHHHHHHHHHHHHH
Confidence 3334556666666666666554 4444444332 345566666777777664 1 12222225566666665
Q ss_pred HHHhh-----HHhhcHHH-HHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHH
Q 001368 135 RQFGR-----RITSGLLE-TTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRI 208 (1091)
Q Consensus 135 ~~~G~-----~l~s~~~e-~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~ 208 (1091)
.+.=+ .+...... ...++.--+-.-.+.+|+.+++-+.+++.--. ....-..++...+++ .+.||+..||.
T Consensus 341 ~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s--~p~~~~~eV~~la~g-rl~DkSslVRk 417 (1251)
T KOG0414|consen 341 ASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHS--IPLGSRTEVLELAIG-RLEDKSSLVRK 417 (1251)
T ss_pred HHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccC--CCccHHHHHHHHHhc-ccccccHHHHH
Confidence 54332 11111111 22222223333578999999999999998433 334556677765444 37899999999
Q ss_pred HHHHHHHHHHhhcCCCc---ccchhhhHHHHHHHhccC
Q 001368 209 AGARCLKAFAHIGGPCL---GVGELDNSATHCVKAIED 243 (1091)
Q Consensus 209 aAa~cL~~l~~~~~~~~---~~~dlE~l~tl~~K~le~ 243 (1091)
.|++-+.-+..+- ||- ...|+++-..=..+.+|.
T Consensus 418 ~Ai~Ll~~~L~~~-Pfs~~~~~~~~~~~~E~~~~~~e~ 454 (1251)
T KOG0414|consen 418 NAIQLLSSLLDRH-PFSSELRSDDLRAKLEKELQKLEE 454 (1251)
T ss_pred HHHHHHHHHHhcC-CchhhhcchhhhhhHHHHHHhhhh
Confidence 9998877766663 785 455666555556666664
No 177
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=32.12 E-value=7.6e+02 Score=27.60 Aligned_cols=76 Identities=20% Similarity=0.152 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhcCCcccccchhhHHHHHHHHhcCCCC--------chhHHHHHHHHHHHHHhCCC--cccchhhhHHH
Q 001368 863 GSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIP--------GLQMWSLHGLLLTIEAAGFS--FVSHVQATLGL 932 (1091)
Q Consensus 863 a~~aLALG~I~r~vGgmas~~~l~t~v~iL~sL~~Dp~P--------~Vh~WaL~aL~li~dsaG~~--f~~~v~stL~l 932 (1091)
||..+.+-+|-+.-.+-.- +.|+.++.-|+.++++|.. .-|+-||+-|-.++..+.+. -.+|++..+.+
T Consensus 166 AGLP~~i~aiL~ae~~~~~-~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~l 244 (255)
T PF10350_consen 166 AGLPFLILAILSAEPSNSR-PLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALIL 244 (255)
T ss_pred CcHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 4566666666665554332 6789999999999998874 36666777776666654444 56778877777
Q ss_pred HHHHhcc
Q 001368 933 AMEILLS 939 (1091)
Q Consensus 933 l~~lll~ 939 (1091)
.++-+-+
T Consensus 245 ai~~f~s 251 (255)
T PF10350_consen 245 AIKGFSS 251 (255)
T ss_pred HHHhCCC
Confidence 7665543
No 178
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=31.75 E-value=3.9e+02 Score=27.27 Aligned_cols=81 Identities=16% Similarity=0.118 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchh-h-HHHHHHHHHHHhc-CCchHHHHHHHHHHHHHH
Q 001368 372 EPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSE-F-KEVLDSTVVAAVS-HSSQLVRIEAALTLRALA 448 (1091)
Q Consensus 372 E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~-~-~~~l~d~l~~ll~-hps~svRi~AA~cLr~~~ 448 (1091)
+.+++++++.|-+++.. .+++...-||..+-.++..-|..+.. + .....+.+..++. ++...||--....+..-+
T Consensus 36 ~~~~k~a~ral~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 36 DVQPKYAMRALKKRLLS--KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred CCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 56789999999998866 45667778899999999998886653 2 3457777777776 788889988999999888
Q ss_pred HhCCcc
Q 001368 449 EVDPTC 454 (1091)
Q Consensus 449 ~a~P~~ 454 (1091)
.+++..
T Consensus 114 ~~f~~~ 119 (142)
T cd03569 114 LAFRNK 119 (142)
T ss_pred HHhCCC
Confidence 888764
No 179
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.76 E-value=1.4e+03 Score=30.14 Aligned_cols=278 Identities=14% Similarity=0.063 Sum_probs=152.5
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHHHHHHhh---cCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhh-cCCC
Q 001368 42 LLSDLISAIDEEPKESILLWQRKCEDALYSLLI---LGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLS-DGKK 117 (1091)
Q Consensus 42 ~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~---~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~-~~K~ 117 (1091)
....|..+.--+..+|+++++..=|.-...--. ...=||--..+-+|+-.=|+--=...+-+-+..-+.... ...+
T Consensus 374 lcd~Lvt~YflLt~~eLEeW~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~ 453 (978)
T KOG1993|consen 374 LCDLLVTHYFLLTEEELEEWTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTE 453 (978)
T ss_pred HHHHHHHHHHhcCHHHHHHHhcChHHhhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccc
Confidence 344566666678888888888654443322111 113366656666666665654222222222211111110 0000
Q ss_pred CCh---HhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 001368 118 SEP---QKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF---NEEFVRQEALLLLQNALEGSGGSAAASAYSEAF 191 (1091)
Q Consensus 118 ~sp---~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~---~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~ 191 (1091)
+-+ .|+ |+....|..|-++-.++ .+-.-..+.++--+.+ +-..+|.-+...++-=++ .. .....-...|
T Consensus 454 ~l~a~L~KD-AiYaa~g~~a~~l~~~~-dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvs-vq--~~~e~k~l~Y 528 (978)
T KOG1993|consen 454 DLTALLLKD-AIYAAFGLAAYELSNIL-DFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVS-VQ--QKLELKPLLY 528 (978)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHhcC-CHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhh-ee--chHhHHHHHH
Confidence 001 134 44444444444433332 1111111222222222 224466666666665544 22 2344567778
Q ss_pred HHHHHHhccCc-chHHHHHHHHHHHHHHhhcCCCc---ccchhhhHHHHHHHhccC-CChhHHHHHHHHHHHHHHhccCC
Q 001368 192 RLIMRFAIVDK-SFVVRIAGARCLKAFAHIGGPCL---GVGELDNSATHCVKAIED-PIASVRDAFAEALGSLLALGMNP 266 (1091)
Q Consensus 192 K~~~r~~~~Dk-s~~Vr~aAa~cL~~l~~~~~~~~---~~~dlE~l~tl~~K~le~-s~~~vR~a~A~~Lg~lLa~~~~~ 266 (1091)
+. +=.-++|. +++||.++++.+.-++... -|- -..=+|++-..|||-++. ...++|..+=.+++.++...--
T Consensus 529 ~a-~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e- 605 (978)
T KOG1993|consen 529 CA-FLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE- 605 (978)
T ss_pred HH-HHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-
Confidence 85 44448886 9999999999999888753 332 123368899999999988 5578999999999999966432
Q ss_pred CCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhcc
Q 001368 267 QAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRA 346 (1091)
Q Consensus 267 ~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~ 346 (1091)
- .......+..++..-.-.+. .-.=.|.++-...-.|++.+|..-. +.-.|+--|+++-..
T Consensus 606 ~-------------I~P~~~~ivq~lp~LWe~s~--~e~lLr~alL~~L~~lV~alg~qS~----~~~~fL~pVIel~~D 666 (978)
T KOG1993|consen 606 H-------------IAPYASTIVQYLPLLWEESE--EEPLLRCALLATLRNLVNALGAQSF----EFYPFLYPVIELSTD 666 (978)
T ss_pred h-------------hhHHHHHHHHHHHHHHhhhc--cCcHHHHHHHHHHHHHHHHhccCCc----cchHHHHHHHHHhcC
Confidence 1 00122223224443332332 2356788999999999999997432 346777677777664
No 180
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.18 E-value=1.5e+03 Score=30.40 Aligned_cols=117 Identities=19% Similarity=0.135 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---hCCcchhhHHHHHHHHHHhh
Q 001368 396 KIAALRTLSYTLKTLGEVPS---EFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAE---VDPTCVSGLITYGVTTLNAL 469 (1091)
Q Consensus 396 lv~aL~el~~Ll~~LGsa~~---~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~---a~P~~~~~ll~~~~~~L~~~ 469 (1091)
-=.||+.+|+|..-|-..++ ..-.-+..-++-.+..|.-..|-.|.|.+..|+. ..|..+.+.++....+|...
T Consensus 435 kdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d 514 (1010)
T KOG1991|consen 435 KDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLND 514 (1010)
T ss_pred hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccC
Confidence 33899999999988876543 2333466667778899999999999999999993 34567777777777777543
Q ss_pred hhhhccccCCcccchhhhhchHHHHHHHHHhhcCCCCCccCCchhHHHHHHHHHHhhccC
Q 001368 470 RENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESS 529 (1091)
Q Consensus 470 ~~~l~~~~~~~~~~~~~~~~G~a~alAALl~~~~~~pLgvp~~~~~~V~~~A~~LLk~~~ 529 (1091)
++ . |.+ .--|+||-.+|+.-+..+-++.. -|-.+-++|||=+.
T Consensus 515 ~~---------l---PV~-VeAalALq~fI~~~~~~~e~~~~----hvp~~mq~lL~L~n 557 (1010)
T KOG1991|consen 515 NE---------L---PVR-VEAALALQSFISNQEQADEKVSA----HVPPIMQELLKLSN 557 (1010)
T ss_pred Cc---------C---chh-hHHHHHHHHHHhcchhhhhhHhh----hhhHHHHHHHHHHH
Confidence 21 1 222 33477888888876654333322 22334456666554
No 181
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.89 E-value=1.1e+02 Score=35.78 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=64.8
Q ss_pred hHHHHHhHHhhhccc------CccchhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccCch---hhhhhchHHHHHHhhc
Q 001368 987 KWSVRFTQQLVLFAP------QAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPD---SVIEERIEGNLFHMLD 1057 (1091)
Q Consensus 987 ~eai~clQqL~lFAP------~~v~~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a~---~v~~~~le~~Lf~~LD 1057 (1091)
.+=+.||+.|-+|.- ..+++..+++.+- +|.++...||..|...+--.+|-+|. .|.+.|.-..|+.+|+
T Consensus 98 e~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 98 EDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence 444555555555543 3345555667777 99999999999999999999999996 5677888889999999
Q ss_pred cCCCHHHHH--HHHHHhhh
Q 001368 1058 EETDSEYVK--SYTLCLAY 1074 (1091)
Q Consensus 1058 ~e~d~~l~~--~~~~~~~~ 1074 (1091)
.+++...+. ++.+|.+-
T Consensus 177 ~~~~~~~r~kaL~AissLI 195 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLI 195 (342)
T ss_pred cCCCchHHHHHHHHHHHHH
Confidence 887766643 56665554
No 182
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=29.34 E-value=86 Score=36.27 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=53.7
Q ss_pred HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhh-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001368 377 SFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEF-KEVLDSTVVAAVSHSSQLVRIEAALTLRALA 448 (1091)
Q Consensus 377 ~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~-~~~l~d~l~~ll~hps~svRi~AA~cLr~~~ 448 (1091)
++.+.+.+.+++-++| .|+-+|+.-++.+++.+-+.-+-+ .-+.++-++.++.||..-||.+|-.++....
T Consensus 356 ~i~k~L~~~lq~n~~n-t~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 356 EIVKVLKKYLQSNNPN-TWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHHHHhcCCCC-ceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 4455555555455555 367789999999999876655433 4578999999999999999999999887654
No 183
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.93 E-value=6.8e+02 Score=34.59 Aligned_cols=167 Identities=18% Similarity=0.150 Sum_probs=112.0
Q ss_pred hhhHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHhCCCcccchh-hhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhh
Q 001368 885 VPATVSSISLLAKTSIP-GLQMWSLHGLLLTIEAAGFSFVSHVQ-ATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVL 962 (1091)
Q Consensus 885 l~t~v~iL~sL~~Dp~P-~Vh~WaL~aL~li~dsaG~~f~~~v~-stL~ll~~lll~~~~~~~~~~~~igr~l~alI~~L 962 (1091)
+...+.+.+.+++|+|| .|+. +--+...+.+ .+.. |+ .-|.+++.-++... .+....-.++-..+|.-.
T Consensus 142 ~~~~f~~f~d~~~~~~~~~v~~--~~~i~~~li~---e~d~-v~~e~L~~ll~~lv~~~---~~~~~~a~~la~~li~~~ 212 (1266)
T KOG1525|consen 142 VHELFRTFFDLARKGHPKKVFN--MLDIAIMLIT---EEDT-VQSELLDVLLENLVKPG---RDTIKEADKLASDLIERC 212 (1266)
T ss_pred HHHHHHHHHHHHhccccHHHHH--HHHHHHHHHH---hhcc-chHHHHHHHHHHhccCC---CCccHHHHHHHHHHHHHh
Confidence 56777788899999997 4666 2222222222 1222 33 46667776666543 334455667777888888
Q ss_pred CCCCCCch-hhhHhhhcc--ccCCCchhHHHHHhHHhhhcccCccchhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccC
Q 001368 963 GPELAPGS-IFFSRCKVS--AWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKD 1039 (1091)
Q Consensus 963 GPeLq~~s-~~~~~~~~~--~~~~~~~~eai~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~ 1039 (1091)
++.+.+.. .++.+|+.. ........-.-..+=+|+-.||+.+..- +|.|-..|.|.+..-|.-|+.-+.++....
T Consensus 213 a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~v--ip~l~~eL~se~~~~Rl~a~~lvg~~~~~~ 290 (1266)
T KOG1525|consen 213 ADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAV--IPQLEFELLSEQEEVRLKAVKLVGRMFSDK 290 (1266)
T ss_pred hhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHH--HHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 98888654 477777551 2222234556666778999999988755 899999999999999999999999999998
Q ss_pred chhhhhh---chHHHHHHhhccCCCH
Q 001368 1040 PDSVIEE---RIEGNLFHMLDEETDS 1062 (1091)
Q Consensus 1040 a~~v~~~---~le~~Lf~~LD~e~d~ 1062 (1091)
.....++ -.-.-|+..-|...+.
T Consensus 291 ~~~l~~~~~~~~~~fl~r~~D~~~~v 316 (1266)
T KOG1525|consen 291 DSQLSETYDDLWSAFLGRFNDISVEV 316 (1266)
T ss_pred hhhhcccchHHHHHHHHHhccCChhh
Confidence 8776632 2334445555555543
No 184
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.82 E-value=2.3e+02 Score=26.89 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHHHhcCCcchHHHHHH--Hhhcccc-cCCcchhHHHHHHHHHHHhhcCCcccccchhhHHHHHHHHh
Q 001368 820 GSEVLNSIQAIFLSILAEGDICASQRRAL--LLGDLTV-VTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLA 896 (1091)
Q Consensus 820 ~~~v~~~~~~li~~~l~~~d~~~~~r~aa--~l~~lv~-~~dp~~Ra~~aLALG~I~r~vGgmas~~~l~t~v~iL~sL~ 896 (1091)
+++..+....++..+..|...--+.|+|| ...-+.. ..+|..|| .|.+++|--.+
T Consensus 11 ~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRa----------------------AtaIsiLeeis 68 (93)
T COG1698 11 SEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRA----------------------ATAISILEEIS 68 (93)
T ss_pred hHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHH----------------------HHHHHHHHHHh
Confidence 46666777778888665543213677776 3333434 46788998 47788899999
Q ss_pred cCCCCchh
Q 001368 897 KTSIPGLQ 904 (1091)
Q Consensus 897 ~Dp~P~Vh 904 (1091)
|||+=..|
T Consensus 69 nDPNmP~h 76 (93)
T COG1698 69 NDPNMPLH 76 (93)
T ss_pred cCCCCchH
Confidence 99993334
No 185
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.26 E-value=4.8e+02 Score=33.92 Aligned_cols=182 Identities=21% Similarity=0.274 Sum_probs=112.5
Q ss_pred HHHHHHh-hcCCcccccchhhHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHhC---CCcccchhhhHHHHH-HHh-ccC
Q 001368 868 AIGCIHR-SAGGMALSSLVPATVSSISLLAKTSI-PGLQMWSLHGLLLTIEAAG---FSFVSHVQATLGLAM-EIL-LSE 940 (1091)
Q Consensus 868 ALG~I~r-~vGgmas~~~l~t~v~iL~sL~~Dp~-P~Vh~WaL~aL~li~dsaG---~~f~~~v~stL~ll~-~ll-l~~ 940 (1091)
|++.=|| .||.+| ++..+++|.. |-- |..=.++|.-+..++-..- .+..+-...-+|+-+ +.+ .+.
T Consensus 49 a~srkYR~~Vga~G----mk~li~vL~~---D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~q 121 (970)
T KOG0946|consen 49 AFSRKYREEVGAQG----MKPLIQVLQR---DYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQ 121 (970)
T ss_pred HHHHHHHHHHHHcc----cHHHHHHHhh---ccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCc
Confidence 3444455 366554 7888777765 776 8888999999998886521 112222334455443 222 222
Q ss_pred CCCC--------chh--HHHHHHHHHHHHHhhCCCCCCchhhhHhhhccccCCCchhHHHHHhHHhhhcccCccchhhHH
Q 001368 941 ENGW--------VDL--QQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHV 1010 (1091)
Q Consensus 941 ~~~~--------~~~--~~~igr~l~alI~~LGPeLq~~s~~~~~~~~~~~~~~~~~eai~clQqL~lFAP~~v~~~~lV 1010 (1091)
.+-+ .|+ +..--+++.+++...|||+|+. .|--| .=|
T Consensus 122 d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~---------------------------ll~~P------~gI 168 (970)
T KOG0946|consen 122 DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDA---------------------------LLVSP------MGI 168 (970)
T ss_pred hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHH---------------------------HHHCc------hhH
Confidence 2200 122 3455578888888888887653 11112 226
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHccCch---hhhhhchHHHHHHhhccCCCHHH--H-----HHHHHHhhhhccccc
Q 001368 1011 QTLLSTLSSRQPILRHLAVSTLRHLIEKDPD---SVIEERIEGNLFHMLDEETDSEY--V-----KSYTLCLAYFSSFYA 1080 (1091)
Q Consensus 1011 ~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a~---~v~~~~le~~Lf~~LD~e~d~~l--~-----~~~~~~~~~~~~~~~ 1080 (1091)
..|-..|..++-+.|..|+--|-.|++-.+. -|.=+..-+.||..+..|++.++ . .++--..-+-.+|--
T Consensus 169 S~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~ 248 (970)
T KOG0946|consen 169 SKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQN 248 (970)
T ss_pred HHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhh
Confidence 7788888888999999999999999987763 22224677889999999986554 1 222222233445666
Q ss_pred ccccccccC
Q 001368 1081 FYLENEYLP 1089 (1091)
Q Consensus 1081 ~~~~~~~~~ 1089 (1091)
|+.|.-|+|
T Consensus 249 ~FrE~~~i~ 257 (970)
T KOG0946|consen 249 FFREGSYIP 257 (970)
T ss_pred HHhccccHH
Confidence 777777765
No 186
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=27.92 E-value=8.4e+02 Score=31.45 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHh--hHHhhcHHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHh
Q 001368 125 GAAQCLGELYRQFG--RRITSGLLETTIIAAKLMKF----NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFA 198 (1091)
Q Consensus 125 aA~~cLG~l~~~~G--~~l~s~~~e~~~~llK~lK~----~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~ 198 (1091)
+-+.+.|-+.+.+- .+++..++-.++.+.-++-- ..+-+|+.+++.+.||+.--.... .--.++...+.| +
T Consensus 318 ~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~--~~r~ev~~lv~r-~ 394 (1128)
T COG5098 318 CFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV--GRRHEVIRLVGR-R 394 (1128)
T ss_pred HHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc--chHHHHHHHHHH-H
Confidence 56667777666442 24556677777777777643 567899999999999998333222 223455555555 4
Q ss_pred ccCcchHHHHHHHHHHHHHHhhcCCCc
Q 001368 199 IVDKSFVVRIAGARCLKAFAHIGGPCL 225 (1091)
Q Consensus 199 ~~Dks~~Vr~aAa~cL~~l~~~~~~~~ 225 (1091)
+.||+..||+-|.+.+..|...- ||-
T Consensus 395 lqDrss~VRrnaikl~SkLL~~H-PF~ 420 (1128)
T COG5098 395 LQDRSSVVRRNAIKLCSKLLMRH-PFA 420 (1128)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcC-Chh
Confidence 89999999999998777766552 664
No 187
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=27.73 E-value=1.1e+03 Score=29.26 Aligned_cols=131 Identities=16% Similarity=0.015 Sum_probs=89.8
Q ss_pred HHHHHHH---HHHHHHHhhHHhhcHHHH-HHHHHHHhc------c--CcHHHHHHHHHHHHHHHhcCCCCC--chhHHHH
Q 001368 124 AGAAQCL---GELYRQFGRRITSGLLET-TIIAAKLMK------F--NEEFVRQEALLLLQNALEGSGGSA--AASAYSE 189 (1091)
Q Consensus 124 ~aA~~cL---G~l~~~~G~~l~s~~~e~-~~~llK~lK------~--~~a~~R~~~l~~L~kil~g~g~~~--~~~~~~d 189 (1091)
..++.-+ ...+...+..+...+... .+-..|.+. + .+...|.-+..+++.+.+..-... |-+....
T Consensus 339 ~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~ 418 (501)
T PF13001_consen 339 SLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEF 418 (501)
T ss_pred hhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHH
Confidence 4677777 788888887776655443 334455562 1 357899999999999998777544 3444444
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCccc----chhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 190 AFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGV----GELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 190 i~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~----~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
.++ + +.+....||.+--+||..|..+. .-... ..-..+..+..+..++....+|.++.+...+++
T Consensus 419 LF~----s-L~~~~~evr~sIqeALssl~~af-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~f 487 (501)
T PF13001_consen 419 LFD----S-LEDESPEVRVSIQEALSSLAPAF-KDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACF 487 (501)
T ss_pred HHH----H-hhCcchHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhC
Confidence 444 3 47788899999999999999874 22222 222345556777777888889998888766654
No 188
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=27.17 E-value=1.7e+03 Score=29.97 Aligned_cols=167 Identities=19% Similarity=0.075 Sum_probs=90.4
Q ss_pred HHHhhcCCCchh--hHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhH-------
Q 001368 70 YSLLILGARRPV--RHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR------- 140 (1091)
Q Consensus 70 ~~~l~~~~g~P~--R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~------- 140 (1091)
-+|+...||.-. ++|. ||++ |...+|++...+++++... ++.|.. .+-+|.+|-+--..
T Consensus 520 k~Ilkehp~YId~ylRl~--~ma~-----~k~~~~ea~~~lk~~l~~d-~~np~a----rsl~G~~~l~k~~~~~a~k~f 587 (1018)
T KOG2002|consen 520 KSILKEHPGYIDAYLRLG--CMAR-----DKNNLYEASLLLKDALNID-SSNPNA----RSLLGNLHLKKSEWKPAKKKF 587 (1018)
T ss_pred HHHHHHCchhHHHHHHhh--HHHH-----hccCcHHHHHHHHHHHhcc-cCCcHH----HHHHHHHHHhhhhhcccccHH
Confidence 355567788877 3333 7775 7788999999999999733 335543 35566555322111
Q ss_pred ---------------HhhcHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHHhcC----------CCCC----chhHHHH
Q 001368 141 ---------------ITSGLLETTIIAAKLMKFN--EEFVRQEALLLLQNALEGS----------GGSA----AASAYSE 189 (1091)
Q Consensus 141 ---------------l~s~~~e~~~~llK~lK~~--~a~~R~~~l~~L~kil~g~----------g~~~----~~~~~~d 189 (1091)
++++..-.+..+-+-.++. +...-.-|++...|+|+.= |--. .-.-++|
T Consensus 588 ~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~d 667 (1018)
T KOG2002|consen 588 ETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARD 667 (1018)
T ss_pred HHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHH
Confidence 1111111111111111111 2223334666677777632 2111 1346899
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHH
Q 001368 190 AFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEAL 256 (1091)
Q Consensus 190 i~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~L 256 (1091)
|+++ +|.+.. +...|..--+.|+.+.-+.. ..++...+..-|+.+..+++|=+..|+++
T Consensus 668 IFsq-VrEa~~-~~~dv~lNlah~~~e~~qy~------~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 668 IFSQ-VREATS-DFEDVWLNLAHCYVEQGQYR------LAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred HHHH-HHHHHh-hCCceeeeHHHHHHHHHHHH------HHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 9997 565543 45556666677776655543 44555666666666666666655555443
No 189
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=26.94 E-value=7.1e+02 Score=25.62 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=55.7
Q ss_pred hHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHH-Hhcc--CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 001368 120 PQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAK-LMKF--NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRL 193 (1091)
Q Consensus 120 p~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK-~lK~--~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~ 193 (1091)
+.....++.++..++.+++..+....+...+.++. .+.+ +...-|..+|..+.++++ ++....|+|.-
T Consensus 87 ~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~------~p~~l~~lf~N 157 (168)
T PF12783_consen 87 FPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK------DPQFLVDLFVN 157 (168)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh------ChhHHHHHHHH
Confidence 54444799999999999999999999999999888 6664 334678889999999886 46789999973
No 190
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=26.44 E-value=4e+02 Score=27.47 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHhhcC--CcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHh
Q 001368 80 PVRHLASVAMGRIISKG--DNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRIT 142 (1091)
Q Consensus 80 P~R~l~a~cla~l~~~G--D~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~ 142 (1091)
..+....+-++.||..| +...+|+.+..+......... |....-.+.|+..+....|+.+.
T Consensus 101 ~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~--~~~~~~~ie~~~~lL~~~G~~l~ 163 (209)
T PF02854_consen 101 QRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQ--PPPDEENIECLCTLLKTCGKKLE 163 (209)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCC--HHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHhhHhhccccchhHHHHHHHHHhccccccc--CCCcHhHHHHHHHHHHHHHHHHh
Confidence 34667889999999875 788899977766665541111 22222577888888888888886
No 191
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=25.79 E-value=2.6e+02 Score=36.94 Aligned_cols=124 Identities=16% Similarity=0.144 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcc
Q 001368 122 KVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFN-EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIV 200 (1091)
Q Consensus 122 ~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~-~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~ 200 (1091)
.++-++.-||-|--++||.+-.++|. +.|-+..+ -.++|--+..++..+|..-- ..+-+=|=|. . .++.
T Consensus 947 vra~~vvTlakmcLah~~LaKr~~P~----lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~d~YiP~I-~-~~L~ 1016 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAKRLMPM----LVKELEYNTAHAIRNNIVLAMGDICSSYT----AMTDRYIPMI-A-ASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHhhhHHHHhcceeeeehhhHHHHH----HHHHHhhHHH-H-HHhc
Confidence 34568889999999999999988887 45555444 35677666665555554221 1112222332 2 2488
Q ss_pred CcchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 201 DKSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 201 Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
|.+..||+-+.--|..|...+ |+ |.+++ +..+.+-.+ +++..+|.-+==++|++|
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~--~vKw~G~L--f~Rf~l~l~-D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG--IVKWNGEL--FIRFMLALL-DANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhh--hhhcchhh--HHHHHHHHc-ccCHHHHHHHHHHHHHHH
Confidence 999999999998888888886 55 88887 666665544 467779998888999999
No 192
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=25.55 E-value=3.4e+02 Score=35.70 Aligned_cols=114 Identities=15% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcc---hHHHHHHHHHHHH
Q 001368 140 RITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKS---FVVRIAGARCLKA 216 (1091)
Q Consensus 140 ~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks---~~Vr~aAa~cL~~ 216 (1091)
.++-.++.....++-.+--...-+|-+.+.++.-.+.-.+.-.++. ..-+.+. .=+...|-+ +.||..|.+||.+
T Consensus 902 vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~-~~Tlvp~-lLsls~~~~n~~~~VR~~ALqcL~a 979 (1030)
T KOG1967|consen 902 VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH-LSTLVPY-LLSLSSDNDNNMMVVREDALQCLNA 979 (1030)
T ss_pred hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH-HhHHHHH-HHhcCCCCCcchhHHHHHHHHHHHH
Q ss_pred HHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHH
Q 001368 217 FAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEA 255 (1091)
Q Consensus 217 l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~ 255 (1091)
|.+..++---.+.-+.+.+...|.+|++---||.-++++
T Consensus 980 L~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 980 LTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
No 193
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=25.25 E-value=7.7e+02 Score=27.92 Aligned_cols=81 Identities=14% Similarity=0.056 Sum_probs=60.9
Q ss_pred HHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC----chhHHHHHHHHHHHHhcc--------CcchHHH
Q 001368 140 RITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA----AASAYSEAFRLIMRFAIV--------DKSFVVR 207 (1091)
Q Consensus 140 ~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~----~~~~~~di~K~~~r~~~~--------Dks~~Vr 207 (1091)
.+....+..+..++.++-..+..+|...+++|..++..+..+. ...-..+++.-+.+.++. |.+..+-
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 5666788889999999998899999999999999999887444 111222333334555666 7888888
Q ss_pred HHHHHHHHHHHhh
Q 001368 208 IAGARCLKAFAHI 220 (1091)
Q Consensus 208 ~aAa~cL~~l~~~ 220 (1091)
.+|-.|+..|++.
T Consensus 192 ~~ay~~L~~L~~~ 204 (282)
T PF10521_consen 192 QAAYPALLSLLKT 204 (282)
T ss_pred HHHHHHHHHHHHh
Confidence 8888899888775
No 194
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=24.49 E-value=2.3e+02 Score=30.03 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=47.9
Q ss_pred ccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 001368 199 IVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1091)
Q Consensus 199 ~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa 261 (1091)
.-|....+|-+|-+|+..+.... ++.-|+..+...+.+++.+ ++++|.-.-..+..+..
T Consensus 36 ~vDDGLelRK~ayE~lytlLd~~---~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~ 94 (169)
T PF08623_consen 36 KVDDGLELRKAAYECLYTLLDTC---LSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQ 94 (169)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHST---CSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHH
Confidence 46899999999999999999853 4555677788899999999 99999988888888753
No 195
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=23.64 E-value=6.9e+02 Score=26.49 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=64.0
Q ss_pred CchhhHHHHHHHHHHhhcC-CcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHh
Q 001368 78 RRPVRHLASVAMGRIISKG-DNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLM 156 (1091)
Q Consensus 78 g~P~R~l~a~cla~l~~~G-D~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~l 156 (1091)
|=+.|++.-.||-+++... ++..+. .+.+.+..|=+|+...+.-+.-.|..+-......+.......+..+-|.+
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~~~----~~~~~v~~GL~D~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRIDIS----EFLDRVEAGLKDEHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS-HH----HHHHHHHHTTSS-HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCHH----HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999998752 222222 22333333544477766567777777766666666665555555555555
Q ss_pred ----ccC--------cHHHHHHHHHHHHHHHhcCCCCCchh-HHHHHHHH
Q 001368 157 ----KFN--------EEFVRQEALLLLQNALEGSGGSAAAS-AYSEAFRL 193 (1091)
Q Consensus 157 ----K~~--------~a~~R~~~l~~L~kil~g~g~~~~~~-~~~di~K~ 193 (1091)
|.+ +...-.+++++..++=..+.++..+. .+.++|..
T Consensus 116 ~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~~~~f~~~ 165 (169)
T PF08623_consen 116 SKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNKWNEFVEW 165 (169)
T ss_dssp H----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-HHHHHHHH
T ss_pred hccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHH
Confidence 321 12233367777777633344333333 67888875
No 196
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=23.26 E-value=1.8e+02 Score=34.07 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhcc---CCcHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhH-HHHHHHHHHHhcC
Q 001368 356 ACVLYILRIGVTDQ---MTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFK-EVLDSTVVAAVSH 431 (1091)
Q Consensus 356 ~~v~~ILr~~i~~~---LgE~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~-~~l~d~l~~ll~h 431 (1091)
|-.++.|....+.. -.++.=.+.+-.+.|-+-+.|+. +++-|+=++++|...=-+....+. .++..-|+.+|+|
T Consensus 219 Rn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~e--vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~ 296 (526)
T COG5064 219 RNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPE--VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH 296 (526)
T ss_pred HHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHH--HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC
Confidence 45556666655322 24444455555555555455554 566666676665432212111111 1244458888999
Q ss_pred CchHHH
Q 001368 432 SSQLVR 437 (1091)
Q Consensus 432 ps~svR 437 (1091)
|+..|+
T Consensus 297 ~sa~iq 302 (526)
T COG5064 297 ESAKIQ 302 (526)
T ss_pred cccccc
Confidence 887774
No 197
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=22.99 E-value=1e+02 Score=24.81 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHH
Q 001368 212 RCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEA 255 (1091)
Q Consensus 212 ~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~ 255 (1091)
||+..+...++..+.. +.+.+.+-+.+.+++..||.|+=++
T Consensus 1 k~l~~iv~~dp~ll~~---~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 1 KALSSIVEKDPTLLDS---SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred ChHHHHHhcCccccch---HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4677777776333332 2578888899999999999998654
No 198
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=22.95 E-value=1.9e+02 Score=30.68 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=47.9
Q ss_pred chhHHHHHhHHhhhcccCccchhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccCchhh
Q 001368 985 SPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSV 1043 (1091)
Q Consensus 985 ~~~eai~clQqL~lFAP~~v~~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a~~v 1043 (1091)
+...|+.+++...= -+.+|...-||.|....+|+.+.+|+.|...++.|-+|++.-+
T Consensus 24 vr~~Al~~l~~il~--qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 24 VRLAALQVLELILR--QGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHHHHHh--cCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 34666777665543 5778888899999999999999999999999999999998654
No 199
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.75 E-value=1.8e+03 Score=28.93 Aligned_cols=309 Identities=13% Similarity=0.127 Sum_probs=155.2
Q ss_pred HHHHhhcCCCchhhHHHHHHHHH------HhhcCC-cchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHH
Q 001368 69 LYSLLILGARRPVRHLASVAMGR------IISKGD-NISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRI 141 (1091)
Q Consensus 69 L~~~l~~~~g~P~R~l~a~cla~------l~~~GD-~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l 141 (1091)
+.+++....+--.|+-+|+|+.. ++...+ -..+|. .+...++ .|.. -.. .=|...+-.++...+|.+
T Consensus 207 ~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~---fl~s~l~-~K~e-mV~-~EaArai~~l~~~~~r~l 280 (865)
T KOG1078|consen 207 VSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFP---FLESCLR-HKSE-MVI-YEAARAIVSLPNTNSREL 280 (865)
T ss_pred HHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHH---HHHHHHh-chhH-HHH-HHHHHHHhhccccCHhhc
Confidence 33444433333445556666544 222222 113444 4455554 3321 111 124445566777777776
Q ss_pred hhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q 001368 142 TSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 142 ~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
.. +++.+-=.+++..+.+|.++++.|+++-..-- .+...+-+|+-.. .+|..-.+-.- ....|.+.+
T Consensus 281 ~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P-~~v~~cN~elE~l-----Itd~NrsIat~---AITtLLKTG 347 (865)
T KOG1078|consen 281 AP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP-QAVTVCNLDLESL-----ITDSNRSIATL---AITTLLKTG 347 (865)
T ss_pred ch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC-ccccccchhHHhh-----hcccccchhHH---HHHHHHHhc
Confidence 44 77777778888899999999999999876444 3346778888886 67744333322 233444543
Q ss_pred CCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCC
Q 001368 222 GPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANG 301 (1091)
Q Consensus 222 ~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~ 301 (1091)
..+..|.+...+.-++-+-+++-...+..++-.+.... |. ....|..+|+.-....+
T Consensus 348 ----~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f--p~----------------k~~~~m~FL~~~Lr~eG- 404 (865)
T KOG1078|consen 348 ----TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF--PR----------------KHTVMMNFLSNMLREEG- 404 (865)
T ss_pred ----chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc--cH----------------HHHHHHHHHHHHHHhcc-
Confidence 33456666666666655555555555555555554321 11 01233345554443322
Q ss_pred CCcchhHHHHHHHHHHHHHHhc-c---------ccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCC
Q 001368 302 AKSKNMRVNLTLSWVYFLQAIR-L---------KYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMT 371 (1091)
Q Consensus 302 ~~~r~~R~Gv~~ayv~fl~~lg-~---------~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~Lg 371 (1091)
.=+.+-.+.++.+..+..-. . .|.|+. +.......|++++.......+.=-++|.||.-.++.+
T Consensus 405 --g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc-e~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLE--- 478 (865)
T KOG1078|consen 405 --GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC-EFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILE--- 478 (865)
T ss_pred --CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc-cchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhh---
Confidence 23445555566655555211 1 122221 1233333455555421111111124444443333221
Q ss_pred cHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 001368 372 EPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAE 449 (1091)
Q Consensus 372 E~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~ 449 (1091)
+.+.=-.|..+++..- .|... ....+...+.+++-.+...||=.|...|+.+-.
T Consensus 479 --------------------n~ivRaaAv~alaKfg--~~~~~--l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 479 --------------------NAIVRAAAVSALAKFG--AQDVV--LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred --------------------hhhhHHHHHHHHHHHh--cCCCC--ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 1111112222222222 22222 334467778888888888888888888877663
No 200
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=22.59 E-value=1.6e+03 Score=28.36 Aligned_cols=181 Identities=13% Similarity=0.011 Sum_probs=118.7
Q ss_pred cCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCC-CCChH--hHHHHHHHHHHHHHHHhh-HHhhcHHHHHH
Q 001368 75 LGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGK-KSEPQ--KVAGAAQCLGELYRQFGR-RITSGLLETTI 150 (1091)
Q Consensus 75 ~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K-~~sp~--~~~aA~~cLG~l~~~~G~-~l~s~~~e~~~ 150 (1091)
.+|-|-.-+..|.-+++|=.--=+-++|. .+-..+.++- +..|. |. .++..+|.+-++-.. -+.+....++.
T Consensus 104 ~s~epr~~~~Aaql~aaIA~~Elp~~~wp---~lm~~mv~nvg~eqp~~~k~-~sl~~~gy~ces~~Pe~li~~sN~il~ 179 (858)
T COG5215 104 KSPEPRFCTMAAQLLAAIARMELPNSLWP---GLMEEMVRNVGDEQPVSGKC-ESLGICGYHCESEAPEDLIQMSNVILF 179 (858)
T ss_pred cCCccHHHHHHHHHHHHHHHhhCccccch---HHHHHHHHhccccCchHhHH-HHHHHHHHHhhccCHHHHHHHhhHHHH
Confidence 45666668889999999877655666666 5555554333 33453 66 688999999887766 66666666666
Q ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccc
Q 001368 151 IAAKLMKFN--EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVG 228 (1091)
Q Consensus 151 ~llK~lK~~--~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~ 228 (1091)
.+.-.-.++ .+.+|-+++.+|-.-+.-+.+-.--.--|..+-++.=.+.+-.+..++.||..|+-.+..-.+.|+. +
T Consensus 180 aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~-~ 258 (858)
T COG5215 180 AIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQ-S 258 (858)
T ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 666655554 4679999999998866655433311122333333333345567789999999999776553323332 4
Q ss_pred hhh-hHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 229 ELD-NSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 229 dlE-~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
=+| .+..+--+++.+.|++|-.-+-+-.+.+.
T Consensus 259 ymE~aL~alt~~~mks~nd~va~qavEfWstic 291 (858)
T COG5215 259 YMENALAALTGRFMKSQNDEVAIQAVEFWSTIC 291 (858)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 445 36677778888888888777777776665
No 201
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=22.55 E-value=1.4e+03 Score=27.56 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=102.6
Q ss_pred HHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHH
Q 001368 86 SVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQ 165 (1091)
Q Consensus 86 a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~ 165 (1091)
-+|-..|=.-+|.. +-|++-.+||+..|..+-+|+ -|..-++..|+.|.. +..+++.+=+-+.-.-+.++|.
T Consensus 8 y~~~e~l~~a~dk~---q~v~~y~~il~~~k~~~k~k~-lasq~ip~~fk~fp~----la~~a~da~~d~~ed~d~~ir~ 79 (460)
T KOG2213|consen 8 YEFYEILSEATDKS---QHVDDYEGILKAVKGTSKEKR-LASQFIPRFFKHFPS----LADEAIDAQLDLCEDDDVGIRR 79 (460)
T ss_pred HHHHHHHHhhchhh---hhHHHHHHHHHHhhcchHHHH-HHHHHHHHHHhhCch----hhhHHHHhhhccccccchhhHH
Confidence 34555555556665 788899999997787777787 588999999997764 4566777777777778899999
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHH---------HHHhccCcchHHHHHHHHHHHHHHhhc----CCCcccchhh-
Q 001368 166 EALLLLQNALEGSGGSAAASAYSEAFRLI---------MRFAIVDKSFVVRIAGARCLKAFAHIG----GPCLGVGELD- 231 (1091)
Q Consensus 166 ~~l~~L~kil~g~g~~~~~~~~~di~K~~---------~r~~~~Dks~~Vr~aAa~cL~~l~~~~----~~~~~~~dlE- 231 (1091)
.+++-|-..+.| ... + -..|+.-+. +..+.. -+-.+| ++|+..+...- +.+++ .++|
T Consensus 80 qaik~lp~fc~~--d~~-~-rv~d~l~qLLnk~sl~~Lf~~~~~-~D~~ir---ek~l~fi~tKl~~l~~e~L~-kevE~ 150 (460)
T KOG2213|consen 80 QAIKGLPLFCKG--DAL-S-RVNDVLVQLLNKASLTGLFGQIEV-GDEQIR---EKVLKFIRTKLITLKGEVLT-KEVER 150 (460)
T ss_pred HHHhccchhccC--chh-h-hhHHHHHHHHHHHHHHHHHhhhhh-hhHHHH---HHHHHHHHHHhhcccHHHhh-hHHHH
Confidence 999999999987 222 1 122222221 111111 134455 67877776541 12223 6777
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHH
Q 001368 232 NSATHCVKAIEDPIASVRDAFAEALGS 258 (1091)
Q Consensus 232 ~l~tl~~K~le~s~~~vR~a~A~~Lg~ 258 (1091)
.+...++|++++-+-+--..+=.-|+.
T Consensus 151 ~iv~eikkal~dVtgeef~lfm~~L~~ 177 (460)
T KOG2213|consen 151 HIVDEIKKALEDVTGEEFTLFMDILAS 177 (460)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 588899999999877655554444444
No 202
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.11 E-value=2.2e+02 Score=36.70 Aligned_cols=74 Identities=22% Similarity=0.183 Sum_probs=61.1
Q ss_pred ccCccchhhHHHHHHHhh-cCCChHHHHHHHHHHHHHHccCchhhhhhchHHHHHHhhccCCCHHHHH--HHHHHhh
Q 001368 1000 APQAVSVHSHVQTLLSTL-SSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLDEETDSEYVK--SYTLCLA 1073 (1091)
Q Consensus 1000 AP~~v~~~~lV~~L~~~L-~S~~~~Lr~aAv~cLrqL~qr~a~~v~~~~le~~Lf~~LD~e~d~~l~~--~~~~~~~ 1073 (1091)
+|..=...+.|+.||.-. +|+=+.=||.|+.+|.-+.+++-.+|.-.|+++.+=.+=.+-.|+++.+ +=|+|..
T Consensus 14 ~~k~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il 90 (970)
T KOG0946|consen 14 PPKQQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLIL 90 (970)
T ss_pred CCccccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 344456678899999988 5677899999999999999999999999999998887777788999998 3444443
No 203
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=22.08 E-value=1.3e+03 Score=26.85 Aligned_cols=122 Identities=15% Similarity=0.021 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHH
Q 001368 128 QCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVR 207 (1091)
Q Consensus 128 ~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr 207 (1091)
..+-.-|-.+|+.+.....-.+..++-.+-...+..--.++..+.++-..+|. +.++.-+|..+ . ++..+|
T Consensus 119 ~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~---~~F~~~lwl~i-i-----~sp~~R 189 (307)
T PF04118_consen 119 DIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGD---KYFWQCLWLCI-I-----TSPSRR 189 (307)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcCh---hHHHHHHHHHH-h-----cCcchh
Confidence 33334444556655555555555555555533333444677778888777763 35788888853 2 456788
Q ss_pred HHHHHHHHHHHhhcC-----------CCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHH
Q 001368 208 IAGARCLKAFAHIGG-----------PCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGS 258 (1091)
Q Consensus 208 ~aAa~cL~~l~~~~~-----------~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~ 258 (1091)
..|..-+........ ..+-.+|-+-+.....-+++++|--|++.+=+.|=.
T Consensus 190 l~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 190 LGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred HHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 777655544433211 111233444467777777888888888877666544
No 204
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=22.01 E-value=6.5e+02 Score=27.04 Aligned_cols=102 Identities=19% Similarity=0.171 Sum_probs=70.0
Q ss_pred CChHhHHHHHHHHHHHHHH-HhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHh---cCCCCCchhHHHHHHHH
Q 001368 118 SEPQKVAGAAQCLGELYRQ-FGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALE---GSGGSAAASAYSEAFRL 193 (1091)
Q Consensus 118 ~sp~~~~aA~~cLG~l~~~-~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~---g~g~~~~~~~~~di~K~ 193 (1091)
+.|-+. -|....-+|.+. .|+++.-..+-.+.-+-+.+-+.+..+.+.++.+|+.++. ++|.+. -..+|.+.-.
T Consensus 51 ~~Py~f-lA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aL-vPyyrqLLp~ 128 (183)
T PF10274_consen 51 EHPYRF-LARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEAL-VPYYRQLLPV 128 (183)
T ss_pred CccHHH-HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHH
Confidence 356666 699999999999 9999999999999888888888899999999999999954 444333 2345555442
Q ss_pred HHH---H---hccC-----cchHHHHHHHHHHHHHHhhcC
Q 001368 194 IMR---F---AIVD-----KSFVVRIAGARCLKAFAHIGG 222 (1091)
Q Consensus 194 ~~r---~---~~~D-----ks~~Vr~aAa~cL~~l~~~~~ 222 (1091)
++ + .++| +...++.--.+.|..|-+++|
T Consensus 129 -ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG 167 (183)
T PF10274_consen 129 -LNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG 167 (183)
T ss_pred -HHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence 33 1 1122 333444444556666666654
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.83 E-value=1.2e+03 Score=26.34 Aligned_cols=128 Identities=15% Similarity=0.191 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHHHHhhc--CCC-------------------------chh-----hHHHHHHHHHHhhcCCcchhHH
Q 001368 56 ESILLWQRKCEDALYSLLIL--GAR-------------------------RPV-----RHLASVAMGRIISKGDNISVYS 103 (1091)
Q Consensus 56 ~di~~~Q~~l~~~L~~~l~~--~~g-------------------------~P~-----R~l~a~cla~l~~~GD~~~lfd 103 (1091)
+.+++.||.+-..|-+++.. .+. +|. +..--.++..++..||-. +
T Consensus 85 ~~~~~rq~~~y~dld~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Y~~A~~l~~~~~~y~---~ 161 (263)
T PRK10803 85 NQVVERQKQIYLQIDSLSSGGAAAQSTSGDQSGAAASATPAADAGTANAGAPVQSGDANTDYNAAIALVQDKSRQD---D 161 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCccccccccCCCccccccCcccccccCCCCCCCHHHHHHHHHHHHHhcCCHH---H
Confidence 45777788887788777752 111 111 344445555556666654 4
Q ss_pred hHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCC
Q 001368 104 RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSA 182 (1091)
Q Consensus 104 tvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~-~~a~~R~~~l~~L~kil~g~g~~~ 182 (1091)
.+..+.++++.- .+++-.. .|..-||++|...|+. .+....+-+.++. .....+..++.-++.+....|
T Consensus 162 Ai~af~~fl~~y-P~s~~a~-~A~y~LG~~y~~~g~~-----~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g--- 231 (263)
T PRK10803 162 AIVAFQNFVKKY-PDSTYQP-NANYWLGQLNYNKGKK-----DDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG--- 231 (263)
T ss_pred HHHHHHHHHHHC-cCCcchH-HHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC---
Confidence 556788888622 2233333 5789999999988765 4566666677765 234456677777777777666
Q ss_pred chhHHHHHHHHHHH
Q 001368 183 AASAYSEAFRLIMR 196 (1091)
Q Consensus 183 ~~~~~~di~K~~~r 196 (1091)
+..-++++|+.+.+
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 23456777776443
No 206
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=21.28 E-value=1.9e+02 Score=31.34 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhCCCcccchhhhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 001368 906 WSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPEL 966 (1091)
Q Consensus 906 WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~~~~~~igr~l~alI~~LGPeL 966 (1091)
-.|+-++..++.-|....++..+.|..+.++.-++++. .+..+-+|+.+.|..+|||.
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~---~~~~~e~~lgaAi~amGpe~ 76 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFS---FRKELEQVLGAAIRAMGPEQ 76 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcc---hHHHHHHHHHHHHHHCCHHH
Confidence 35777888888888888899999999999999888743 45667777778888899984
No 207
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.13 E-value=7.1e+02 Score=23.62 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccC---CChhHHHHHHHHHHHHHH
Q 001368 185 SAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIED---PIASVRDAFAEALGSLLA 261 (1091)
Q Consensus 185 ~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~---s~~~vR~a~A~~Lg~lLa 261 (1091)
..++++-+.+...++ |+.-.-|-..++-+..|.+.. .++.++++.-..-.++.+++ ..+.....+|+.+|.+++
T Consensus 32 ~~~~~vv~~~i~~~l-e~~~~~~~~~~~Ll~~L~~~~--~~~~~~~~~~f~~~~~~l~dl~~D~P~a~~~la~~~a~~v~ 108 (113)
T smart00544 32 EQHHEVVKVLLTCAL-EEKRTYREMYSVLLSRLCQAN--VISTKQFEKGFWRLLEDIEDLELDIPNAWRNLAEFVARLIS 108 (113)
T ss_pred cchHHHHHHHHHHHH-cCCccHHHHHHHHHHHHHHcC--CcCHHHHHHHHHHHHhhChhhhcccccHHHHHHHHHHHHHH
Confidence 368888888777766 665556667777888888764 56777777666667777776 344688889999998886
Q ss_pred hcc
Q 001368 262 LGM 264 (1091)
Q Consensus 262 ~~~ 264 (1091)
...
T Consensus 109 ~~~ 111 (113)
T smart00544 109 DGI 111 (113)
T ss_pred cCC
Confidence 543
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.02 E-value=1.2e+03 Score=31.61 Aligned_cols=139 Identities=19% Similarity=0.159 Sum_probs=94.3
Q ss_pred hHhHHHHHHHHHHHHHHH--hhHHhhcHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHhcCCC----CCchhHHHHHHH
Q 001368 120 PQKVAGAAQCLGELYRQF--GRRITSGLLETTIIAAKLMKFN-EEFVRQEALLLLQNALEGSGG----SAAASAYSEAFR 192 (1091)
Q Consensus 120 p~~~~aA~~cLG~l~~~~--G~~l~s~~~e~~~~llK~lK~~-~a~~R~~~l~~L~kil~g~g~----~~~~~~~~di~K 192 (1091)
|+-+..|+-+|..+-..| |... -+-...+++++-.+-.. +..+|.=+..+|+++-+.--. +.....|-+.|+
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~a-cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKA-CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHH-hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 466667888888776643 3333 23344667888888774 799999999999998765331 134567999999
Q ss_pred HHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc--ccc-------------hhhhHHH----HHHHhccCCChhHHHHHH
Q 001368 193 LIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL--GVG-------------ELDNSAT----HCVKAIEDPIASVRDAFA 253 (1091)
Q Consensus 193 ~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~--~~~-------------dlE~l~t----l~~K~le~s~~~vR~a~A 253 (1091)
. ++|....||+||.=.|..+......-| ... -.|.... -.+-.+.+.++-||..++
T Consensus 650 ~-----LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 650 L-----LSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred H-----hcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 6 889999999999888887776420111 111 1222222 233456678889999999
Q ss_pred HHHHHHHHhcc
Q 001368 254 EALGSLLALGM 264 (1091)
Q Consensus 254 ~~Lg~lLa~~~ 264 (1091)
-.|+++.....
T Consensus 725 v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 725 VALSHFVVGYV 735 (1387)
T ss_pred HHHHHHHHhhH
Confidence 99999886543
No 209
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=21.00 E-value=3.8e+02 Score=29.35 Aligned_cols=68 Identities=21% Similarity=0.174 Sum_probs=53.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHh--ccCcchHHHHHHHHHHHHHHhh
Q 001368 151 IAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFA--IVDKSFVVRIAGARCLKAFAHI 220 (1091)
Q Consensus 151 ~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~--~~Dks~~Vr~aAa~cL~~l~~~ 220 (1091)
.+.|.|-+++..+|-.++..|.+-+..-....++.-..++|| ..=+| ++||- .||..-|+.+..|+..
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWK-GLfy~mWmsDkp-l~Q~~la~~la~l~~~ 73 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWK-GLFYCMWMSDKP-LVQEELAEELASLIHS 73 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHH-HHHHHHHhcCCc-hhHHHHHHHHHHHHHh
Confidence 356778889999999999999999997775536778999999 46565 57876 5666667777777664
No 210
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=20.93 E-value=9.9e+02 Score=28.70 Aligned_cols=135 Identities=17% Similarity=0.094 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhh-HHhhcHHHHHHHHHHHhccCc
Q 001368 82 RHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGR-RITSGLLETTIIAAKLMKFNE 160 (1091)
Q Consensus 82 R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~-~l~s~~~e~~~~llK~lK~~~ 160 (1091)
..-+..|+...+.+ |+.....++ ..+++-=..+++.|-...+.-++++.+.... .........+..+.|.+.+.|
T Consensus 235 ~~~L~~~~~~f~~k-dp~l~~~~i---~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h 310 (409)
T PF01603_consen 235 HQQLSYCVVQFLEK-DPSLAEPVI---KGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPH 310 (409)
T ss_dssp HHHHHHHHHHHHHH--GGGHHHHH---HHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHh-CchhHHHHH---HHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67788888888877 666666633 4444322244566666788888888887763 334445556667777777777
Q ss_pred HHHHHHHHHHHHH--HHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q 001368 161 EFVRQEALLLLQN--ALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 161 a~~R~~~l~~L~k--il~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
.++=-.+|..+++ ++.-+.. ....+..-++....+.+.+.=+-.||-.|..++..+..-+
T Consensus 311 ~qVAErAl~~w~n~~~~~li~~-~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 311 FQVAERALYFWNNEYFLSLISQ-NSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMD 372 (409)
T ss_dssp HHHHHHHHGGGGSHHHHHHHHC-THHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7765555554433 2332221 1233444444432222333334568888887777766654
No 211
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=20.52 E-value=1.9e+03 Score=28.19 Aligned_cols=109 Identities=11% Similarity=0.082 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhhH----HhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcc
Q 001368 125 GAAQCLGELYRQFGRR----ITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIV 200 (1091)
Q Consensus 125 aA~~cLG~l~~~~G~~----l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~ 200 (1091)
+++..+--+--.||.- +.+.+ +-.+.++.++-...+|+..+..|+.+.=+....--....+||.+.-.---.+
T Consensus 438 ~~lgai~NlVmefs~~kskfl~~ng---Id~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~n 514 (678)
T KOG1293|consen 438 ITLGAICNLVMEFSNLKSKFLRNNG---IDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIN 514 (678)
T ss_pred HHHHHHHHHHhhcccHHHHHHHcCc---HHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHh
Confidence 4444444555566542 22222 3345666677778899999999999887665433445667776652222368
Q ss_pred CcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCC
Q 001368 201 DKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPI 245 (1091)
Q Consensus 201 Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~ 245 (1091)
|++++|+.-+...|+.|.-.. +..+.+.++..++--
T Consensus 515 d~d~~Vqeq~fqllRNl~c~~---------~~svdfll~~~~~~l 550 (678)
T KOG1293|consen 515 DPDWAVQEQCFQLLRNLTCNS---------RKSVDFLLEKFKDVL 550 (678)
T ss_pred CCCHHHHHHHHHHHHHhhcCc---------HHHHHHHHHhhhHHH
Confidence 999999977777777776654 567777777766533
Done!