Query 001368
Match_columns 1091
No_of_seqs 172 out of 214
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 00:34:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 99.7 3.4E-10 1.2E-14 148.3 71.4 886 22-1056 8-1056(1230)
2 4fdd_A Transportin-1; heat rep 99.6 2.1E-10 7.1E-15 144.7 59.8 667 61-1045 87-792 (852)
3 4fdd_A Transportin-1; heat rep 99.6 2.8E-11 9.4E-16 152.7 45.6 482 64-607 256-785 (852)
4 1u6g_C TIP120 protein, CAND1; 99.5 1.7E-09 5.8E-14 141.7 62.2 887 62-1039 173-1187(1230)
5 1qgr_A Protein (importin beta 99.5 6.5E-09 2.2E-13 130.2 61.6 721 62-1040 88-874 (876)
6 2bpt_A Importin beta-1 subunit 99.5 3.6E-08 1.2E-12 123.2 65.5 389 62-469 93-506 (861)
7 1b3u_A Protein (protein phosph 99.3 2.1E-08 7.3E-13 119.3 40.1 419 75-559 136-556 (588)
8 1qgr_A Protein (importin beta 99.1 1.5E-06 5.1E-11 108.8 49.5 451 119-608 341-829 (876)
9 2bpt_A Importin beta-1 subunit 99.1 6.6E-08 2.3E-12 120.8 36.1 380 61-469 321-731 (861)
10 1b3u_A Protein (protein phosph 99.1 9.6E-08 3.3E-12 113.7 34.3 342 65-453 204-552 (588)
11 1ibr_B P95, importin beta-1 su 99.1 4.1E-08 1.4E-12 113.2 29.3 196 62-262 88-289 (462)
12 2qk2_A LP04448P; mini spindles 98.5 8.7E-06 3E-10 87.0 20.8 182 69-261 20-205 (242)
13 2qk2_A LP04448P; mini spindles 98.4 4.5E-06 1.5E-10 89.2 15.4 184 117-325 26-210 (242)
14 2jdq_A Importin alpha-1 subuni 98.3 9.8E-05 3.4E-09 84.8 26.3 382 33-448 31-442 (450)
15 1ibr_B P95, importin beta-1 su 98.3 0.00076 2.6E-08 77.3 32.7 329 64-452 35-398 (462)
16 2jdq_A Importin alpha-1 subuni 98.2 0.00041 1.4E-08 79.5 27.7 349 67-453 23-394 (450)
17 1wa5_B Importin alpha subunit; 98.1 0.00062 2.1E-08 80.9 28.6 351 66-453 89-461 (530)
18 1wa5_B Importin alpha subunit; 98.0 0.0016 5.3E-08 77.4 29.6 392 22-448 89-509 (530)
19 1w63_A Adapter-related protein 98.0 0.0046 1.6E-07 75.4 33.8 364 63-463 141-553 (618)
20 2qk1_A Protein STU2; STU2P, XM 98.0 0.00023 8E-09 77.0 19.2 178 76-260 27-219 (249)
21 2vgl_B AP-2 complex subunit be 98.0 0.0025 8.6E-08 77.2 29.6 167 76-258 60-228 (591)
22 4b8j_A Importin subunit alpha- 98.0 0.0032 1.1E-07 74.5 29.9 394 20-449 74-496 (528)
23 2vgl_B AP-2 complex subunit be 97.9 0.0037 1.2E-07 75.8 30.8 366 63-466 120-510 (591)
24 4b8j_A Importin subunit alpha- 97.9 0.0017 6E-08 76.8 26.0 348 67-453 77-447 (528)
25 1w63_A Adapter-related protein 97.9 0.011 3.6E-07 72.2 33.3 277 145-467 105-395 (618)
26 3ltm_A Alpha-REP4; protein eng 97.9 0.00041 1.4E-08 71.8 17.9 150 66-259 21-170 (211)
27 2qk1_A Protein STU2; STU2P, XM 97.9 0.00029 9.9E-09 76.3 17.1 189 119-324 29-224 (249)
28 3ltj_A Alpharep-4; protein eng 97.8 0.0013 4.5E-08 67.4 20.0 150 66-259 47-196 (201)
29 3ltj_A Alpharep-4; protein eng 97.8 0.0011 3.8E-08 67.9 18.7 151 65-259 15-165 (201)
30 3ltm_A Alpha-REP4; protein eng 97.7 0.0011 3.8E-08 68.5 18.6 152 65-260 51-202 (211)
31 4hxt_A De novo protein OR329; 97.7 0.0021 7.1E-08 67.3 19.6 219 36-264 16-244 (252)
32 2vgl_A Adaptor protein complex 97.6 0.0014 4.8E-08 80.1 19.4 238 819-1066 104-387 (621)
33 1oyz_A Hypothetical protein YI 97.6 0.0026 8.8E-08 68.8 19.5 166 65-260 55-220 (280)
34 4db8_A Armadillo-repeat protei 97.5 0.0012 4.2E-08 69.7 15.6 230 14-260 13-250 (252)
35 1wa5_C Importin alpha RE-expor 97.5 0.21 7.1E-06 63.8 37.8 382 61-469 82-556 (960)
36 1oyz_A Hypothetical protein YI 97.4 0.0019 6.6E-08 69.7 15.8 150 73-259 99-248 (280)
37 3ul1_B Importin subunit alpha- 97.3 0.064 2.2E-06 63.6 28.6 391 22-448 59-477 (510)
38 1jdh_A Beta-catenin; beta-cate 97.3 0.11 3.6E-06 60.8 30.1 364 64-469 59-446 (529)
39 3m1i_C Exportin-1; heat repeat 97.2 0.31 1.1E-05 62.8 36.0 148 62-220 89-264 (1049)
40 2z6g_A B-catenin; FULL-length, 97.2 0.051 1.8E-06 68.0 27.6 348 63-450 149-519 (780)
41 2z6h_A Catenin beta-1, beta-ca 97.2 0.082 2.8E-06 64.4 28.6 346 66-450 16-383 (644)
42 4hxt_A De novo protein OR329; 97.2 0.0044 1.5E-07 64.8 15.1 188 67-261 5-199 (252)
43 1jdh_A Beta-catenin; beta-cate 97.2 0.11 3.7E-06 60.7 28.0 347 65-450 18-386 (529)
44 2vgl_A Adaptor protein complex 97.2 0.59 2E-05 56.9 35.2 357 63-453 145-554 (621)
45 3now_A UNC-45 protein, SD10334 97.0 0.11 3.7E-06 65.2 27.2 358 65-456 331-744 (810)
46 2z6h_A Catenin beta-1, beta-ca 97.0 0.31 1.1E-05 59.2 30.5 363 64-469 56-443 (644)
47 3tpo_A Importin subunit alpha- 96.9 0.13 4.6E-06 61.0 25.4 388 22-447 78-495 (529)
48 3now_A UNC-45 protein, SD10334 96.8 0.41 1.4E-05 60.1 30.1 170 85-261 267-450 (810)
49 4db6_A Armadillo repeat protei 96.8 0.012 4.1E-07 60.2 14.0 184 68-260 16-208 (210)
50 2x19_B Importin-13; nuclear tr 96.8 2 6.9E-05 54.3 39.4 488 63-608 99-651 (963)
51 4ffb_C Protein STU2; tubulin f 96.7 0.022 7.5E-07 62.0 15.8 137 117-260 66-211 (278)
52 2x1g_F Cadmus; transport prote 96.7 0.43 1.5E-05 60.8 30.1 172 81-261 437-615 (971)
53 4db8_A Armadillo-repeat protei 96.6 0.02 6.8E-07 60.3 13.8 150 104-260 55-208 (252)
54 3tpo_A Importin subunit alpha- 96.5 0.26 9E-06 58.4 23.9 283 148-458 77-373 (529)
55 2z6g_A B-catenin; FULL-length, 96.4 0.44 1.5E-05 59.6 26.8 343 64-446 192-556 (780)
56 3a6p_A Exportin-5; exportin-5, 96.4 1.8 6.1E-05 56.8 33.5 75 396-471 549-635 (1204)
57 3ul1_B Importin subunit alpha- 96.4 0.31 1.1E-05 57.6 23.8 110 149-261 59-172 (510)
58 2x19_B Importin-13; nuclear tr 96.4 3.6 0.00012 52.0 35.7 359 124-527 425-828 (963)
59 1wa5_C Importin alpha RE-expor 96.3 4 0.00014 52.0 41.4 136 122-261 377-525 (960)
60 2x1g_F Cadmus; transport prote 96.3 1.2 4.1E-05 56.7 30.0 371 124-529 439-842 (971)
61 1te4_A Conserved protein MTH18 96.1 0.0023 7.9E-08 61.6 2.5 117 105-258 14-130 (131)
62 4ady_A RPN2, 26S proteasome re 96.0 0.18 6.1E-06 63.9 19.8 168 63-260 471-640 (963)
63 3ibv_A Exportin-T; karyopherin 96.0 2.2 7.4E-05 54.9 30.0 78 391-469 507-586 (980)
64 4db6_A Armadillo repeat protei 95.9 0.072 2.4E-06 54.4 13.3 181 33-219 23-209 (210)
65 3grl_A General vesicular trans 95.9 0.11 3.7E-06 63.1 16.5 326 96-453 14-398 (651)
66 3tjz_B Coatomer subunit gamma; 95.6 0.012 4.2E-07 66.9 6.7 184 850-1052 144-333 (355)
67 3m1i_C Exportin-1; heat repeat 95.6 1.7 5.8E-05 56.0 26.9 176 82-262 430-619 (1049)
68 1xqr_A HSPBP1 protein; armadil 95.4 0.17 5.7E-06 56.1 14.4 172 82-261 57-238 (296)
69 4ady_A RPN2, 26S proteasome re 95.0 0.21 7.1E-06 63.3 15.3 152 79-258 451-604 (963)
70 4hat_C Exportin-1; heat repeat 94.1 14 0.00048 47.6 29.6 377 63-467 90-550 (1023)
71 3nmz_A APC variant protein; pr 94.0 3.2 0.00011 48.6 21.6 340 71-454 52-455 (458)
72 3b2a_A TON_1937, putative unch 93.9 1.8 6.2E-05 46.3 17.0 146 104-262 34-180 (265)
73 4ffb_C Protein STU2; tubulin f 93.9 0.73 2.5E-05 49.8 14.8 181 122-324 25-216 (278)
74 1vsy_5 Proteasome activator BL 93.9 10 0.00035 48.7 27.3 86 416-505 839-929 (997)
75 1xm9_A Plakophilin 1; armadill 93.4 10 0.00035 43.9 24.4 111 148-262 3-117 (457)
76 2of3_A ZYG-9; multifunctional 92.7 3.9 0.00013 44.6 17.9 152 97-261 77-236 (266)
77 3b2a_A TON_1937, putative unch 92.2 5.7 0.00019 42.6 17.6 197 144-375 30-226 (265)
78 3tjz_B Coatomer subunit gamma; 92.0 3.1 0.00011 47.2 16.7 159 71-250 32-194 (355)
79 1te4_A Conserved protein MTH18 91.7 0.7 2.4E-05 43.9 9.6 114 68-215 16-129 (131)
80 1xqr_A HSPBP1 protein; armadil 91.5 0.22 7.5E-06 55.2 6.4 65 395-459 56-121 (296)
81 2of3_A ZYG-9; multifunctional 91.0 1.6 5.3E-05 47.7 12.4 93 77-179 144-239 (266)
82 3opb_A SWI5-dependent HO expre 90.9 2.6 8.8E-05 52.4 15.5 183 77-260 469-682 (778)
83 2db0_A 253AA long hypothetical 87.5 29 0.00099 36.0 20.3 179 63-262 68-247 (253)
84 2iw3_A Elongation factor 3A; a 86.2 17 0.00059 46.5 18.9 183 77-264 107-327 (986)
85 3oc3_A Helicase MOT1, MOT1; re 85.0 4 0.00014 48.7 11.1 165 76-260 239-403 (800)
86 3l6x_A Catenin delta-1; cateni 84.2 80 0.0027 38.0 24.1 79 379-460 357-443 (584)
87 4hat_C Exportin-1; heat repeat 79.5 1.5E+02 0.0052 38.1 34.9 143 351-504 466-622 (1023)
88 3opb_A SWI5-dependent HO expre 78.0 28 0.00094 43.4 15.8 198 61-261 495-728 (778)
89 3l9t_A Putative uncharacterize 77.4 12 0.0004 40.1 10.6 94 145-257 69-164 (240)
90 1xm9_A Plakophilin 1; armadill 75.6 6.2 0.00021 45.7 8.9 95 983-1077 16-116 (457)
91 2db0_A 253AA long hypothetical 74.3 86 0.0029 32.5 16.7 199 186-467 29-227 (253)
92 3nmz_A APC variant protein; pr 71.7 18 0.00063 42.2 11.6 173 888-1066 244-439 (458)
93 3gs3_A Symplekin, LD45768P; he 71.1 66 0.0023 34.6 14.9 129 38-175 31-172 (257)
94 3jxy_A Alkylpurine DNA glycosy 68.6 37 0.0013 35.7 12.2 186 43-260 6-194 (232)
95 2iw3_A Elongation factor 3A; a 68.4 53 0.0018 42.1 15.4 181 69-261 19-204 (986)
96 3l9t_A Putative uncharacterize 66.6 1.4E+02 0.0048 31.8 15.9 124 117-260 82-206 (240)
97 3nmw_A APC variant protein; AR 66.2 30 0.001 38.8 11.5 175 888-1066 128-323 (354)
98 3oc3_A Helicase MOT1, MOT1; re 65.1 52 0.0018 39.6 13.1 201 77-319 186-403 (800)
99 3o2t_A Symplekin; heat repeat, 64.8 76 0.0026 36.2 14.4 128 39-175 42-182 (386)
100 1lsh_A Lipovitellin (LV-1N, LV 62.2 1E+02 0.0036 39.7 16.8 218 18-256 290-538 (1056)
101 3tt9_A Plakophilin-2; cell adh 61.1 15 0.0005 39.1 7.2 75 379-453 10-85 (233)
102 2qzg_A Conserved uncharacteriz 60.3 31 0.0011 31.4 7.9 70 819-910 11-87 (94)
103 3tt9_A Plakophilin-2; cell adh 59.8 19 0.00065 38.2 7.9 82 986-1067 27-114 (233)
104 2qsb_A UPF0147 protein TA0600; 57.8 48 0.0017 29.9 8.6 71 819-911 7-84 (89)
105 3l6x_A Catenin delta-1; cateni 53.5 15 0.0005 44.5 6.3 93 985-1077 64-163 (584)
106 1vsy_5 Proteasome activator BL 50.4 40 0.0014 43.3 9.8 84 175-260 786-872 (997)
107 3ebb_A Phospholipase A2-activa 49.4 87 0.003 34.5 11.2 203 93-320 52-263 (304)
108 3nmw_A APC variant protein; AR 45.9 3.4E+02 0.012 30.2 15.7 150 65-221 171-336 (354)
109 3grl_A General vesicular trans 45.4 1.3E+02 0.0045 36.5 12.7 103 987-1089 140-257 (651)
110 1vdy_A Hypothetical protein (R 44.2 1.1E+02 0.0037 30.0 9.7 87 131-221 29-132 (140)
111 1ho8_A Vacuolar ATP synthase s 41.4 27 0.00093 41.0 5.7 58 392-449 418-476 (480)
112 1upk_A MO25 protein; transfera 35.5 5.1E+02 0.017 28.9 20.7 143 145-321 123-284 (341)
113 4gmo_A Putative uncharacterize 32.7 25 0.00085 43.0 3.8 68 152-221 39-107 (684)
114 3ibv_A Exportin-T; karyopherin 32.5 8.8E+02 0.03 30.8 36.8 213 230-467 488-748 (980)
115 4gmo_A Putative uncharacterize 31.7 1.4E+02 0.0049 36.3 10.4 185 75-262 44-259 (684)
116 3u0r_A Apoptosis inhibitor 5; 31.7 7E+02 0.024 29.3 20.3 136 104-260 27-162 (507)
117 2b6c_A Hypothetical protein EF 31.4 4.3E+02 0.015 27.1 12.7 175 53-260 11-187 (220)
118 3o2t_A Symplekin; heat repeat, 30.3 6.4E+02 0.022 28.6 14.6 160 94-267 16-188 (386)
119 1ho8_A Vacuolar ATP synthase s 29.8 54 0.0018 38.5 5.7 74 102-176 394-476 (480)
120 3gjx_A Exportin-1; transport, 29.0 1E+03 0.036 30.6 37.9 148 63-221 102-277 (1073)
121 1lsh_A Lipovitellin (LV-1N, LV 26.9 5E+02 0.017 33.3 14.6 113 122-260 456-575 (1056)
122 3gs3_A Symplekin, LD45768P; he 24.9 6.5E+02 0.022 26.8 15.9 132 127-266 33-177 (257)
123 2i9c_A Hypothetical protein RP 24.4 12 0.00039 36.1 -1.0 37 421-460 58-94 (123)
124 4atg_A TAF6; transcription, TF 22.2 5.1E+02 0.018 26.6 10.8 97 35-132 58-159 (196)
125 2kzs_A Death-associated protei 22.1 99 0.0034 27.9 4.6 31 82-114 56-86 (94)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.65 E-value=3.4e-10 Score=148.31 Aligned_cols=886 Identities=14% Similarity=0.137 Sum_probs=467.8
Q ss_pred HHHHHhhhccCCCCchHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchh
Q 001368 22 LESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISV 101 (1091)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~l 101 (1091)
|..+... =++||+-.-+.-+.+|.+.+..-....-....+++...|++.+. .+-+.+|+..++||..+...-....+
T Consensus 8 l~~lL~~--l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 8 ISNLLEK--MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp HHHHHHH--TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHh--cCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4444444 34688888888888888877432111111344567777777776 56788899999999999975433222
Q ss_pred HHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhH------HhhcHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHH
Q 001368 102 YSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR------ITSGLLETTIIAAKLMK-FNEEFVRQEALLLLQNA 174 (1091)
Q Consensus 102 fdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~------l~s~~~e~~~~llK~lK-~~~a~~R~~~l~~L~ki 174 (1091)
=.-+..|.+.+. ++++..+.+|..+||.+.+.+|.. .....++.+..+++.++ +.+...|..++.+|.++
T Consensus 85 ~~i~~~Ll~~l~---d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 85 ETIVDTLCTNML---SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHTT---CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 222333333332 445566668999999999998875 44568899999999998 46788999999999999
Q ss_pred HhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCC-ChhHHHHHH
Q 001368 175 LEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDP-IASVRDAFA 253 (1091)
Q Consensus 175 l~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s-~~~vR~a~A 253 (1091)
++..|.... ....++... +-..+.|....||..|++|+..++...+.-+ ++.+...+++.+.+. +..+|..+.
T Consensus 162 ~~~~~~~l~-~~~~~ll~~-l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 162 LSRQGGLLV-NFHPSILTC-LLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHTCSSCT-TTHHHHHHH-HGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHhHhHHH-HHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhccCCchhHHHHHH
Confidence 998886663 366788884 5556889889999999999999987642222 344444444444333 357899999
Q ss_pred HHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchh
Q 001368 254 EALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSEL 333 (1091)
Q Consensus 254 ~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~ 333 (1091)
++++.+... . ++ +-. ..+++.+. .+...+.. ...++|-....++..+....|.. +
T Consensus 236 ~~l~~l~~~-~-~~--------~~~---~~l~~l~~-~ll~~l~d----~~~~vR~~a~~~l~~l~~~~~~~-------~ 290 (1230)
T 1u6g_C 236 QCIAAISRQ-A-GH--------RIG---EYLEKIIP-LVVKFCNV----DDDELREYCIQAFESFVRRCPKE-------V 290 (1230)
T ss_dssp HHHHHHHHH-S-SG--------GGT---TSCTTHHH-HHHHHHSS----CCTTTHHHHHHHHHHHHHCTTCC-------C
T ss_pred HHHHHHHHH-h-HH--------HHH---HHHHHHHH-HHHHHhcC----CCHHHHHHHHHHHHHHHHHChHH-------H
Confidence 999998743 2 11 000 12334443 33333221 34678888888888888876653 2
Q ss_pred hHHHHHHHHHhcc----CCCc--------------------------------c--HHHHHHHHHHHHHhhh--------
Q 001368 334 QDYALQVMDMLRA----DIFV--------------------------------D--SHALACVLYILRIGVT-------- 367 (1091)
Q Consensus 334 ~~y~~~i~~ll~~----~~~~--------------------------------~--~~~r~~v~~ILr~~i~-------- 367 (1091)
..|+..++..+.. ++.+ | ...|++..-.|...+.
T Consensus 291 ~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~ 370 (1230)
T 1u6g_C 291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 370 (1230)
T ss_dssp HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH
Confidence 3454444443321 0000 0 0113332222222111
Q ss_pred ----------ccCCc---HHHHHHHHH-----------------------------------------HHhhcccCCCCh
Q 001368 368 ----------DQMTE---PTQRSFLVF-----------------------------------------LGKQLQAVDASP 393 (1091)
Q Consensus 368 ----------~~LgE---~~Q~~~~~~-----------------------------------------l~~~~~~~~~s~ 393 (1091)
..+++ .-+..++.. +.+.+ .+.+.
T Consensus 371 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l--~~~~~ 448 (1230)
T 1u6g_C 371 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQM--KEKSV 448 (1230)
T ss_dssp HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHT--TCSCH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHh--ccCCH
Confidence 11211 111111111 11111 23444
Q ss_pred hHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHHHhC-Cc----chhhHHHHHHHHH
Q 001368 394 FMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQ--LVRIEAALTLRALAEVD-PT----CVSGLITYGVTTL 466 (1091)
Q Consensus 394 ~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~--svRi~AA~cLr~~~~a~-P~----~~~~ll~~~~~~L 466 (1091)
..-..++..++.++..++....+..+.+.+.++..|..++. .+|.+|+.++..+.... |. ++.++++.++..+
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l 528 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV 528 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH
Confidence 44557888899999998776667788999999999999874 89999999999998754 33 3444555444433
Q ss_pred HhhhhhhccccCCcccchhhhhchHH-HHHHHHHhhcCC---CC--CccCCchhHHHHHHHHHHhhccCCChhhHHHHHH
Q 001368 467 NALRENVSFEKGSSLMVELDSLHGQA-TVVAALIFISPK---LP--LGYPARLPKLVLEVSKKMLTESSRNTLAATVEKE 540 (1091)
Q Consensus 467 ~~~~~~l~~~~~~~~~~~~~~~~G~a-~alAALl~~~~~---~p--Lgvp~~~~~~V~~~A~~LLk~~~~~~~~a~~~~q 540 (1091)
+ ++. + ++...+ .+++.++..... .+ -.. .....++..-.+.++....+. ..|..
T Consensus 529 ~-----------d~~---~-~v~~~al~~l~~l~~~~~~~~~~~~~~~~--~~~~~ll~~ll~~l~~~d~~~---~vr~~ 588 (1230)
T 1u6g_C 529 G-----------DPF---Y-KITSEALLVTQQLVKVIRPLDQPSSFDAT--PYIKDLFTCTIKRLKAADIDQ---EVKER 588 (1230)
T ss_dssp T-----------CSS---H-HHHHHHHHHHHHHHHHHCCSSSCCCCCCH--HHHHHHHHHHHHHHSCSSSCH---HHHHH
T ss_pred c-----------ccc---h-HHHHHHHHHHHHHHHHhcCcccccccchH--HHHHHHHHHHHHHHhccCCCH---HHHHH
Confidence 2 111 1 111112 244555544332 00 011 123556666566665433322 23333
Q ss_pred HHHHHHHHhhccCChhhHhhcHHHHHHHHHhhcCCCchhhh--h-------h--ccc---hh-------------hHHHH
Q 001368 541 AGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHII--K-------Q--HGD---LT-------------SKICV 593 (1091)
Q Consensus 541 agWiLi~sLmtl~~~~~Vk~hl~qLLlLWk~~l~~s~~~~~--~-------~--~~e---~~-------------~~L~~ 593 (1091)
+. -.+|.++...|+.+ ..++++++-.-...+........ + . ..+ |. -+-..
T Consensus 589 a~-~~lg~L~~~~g~~~-~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~ 666 (1230)
T 1u6g_C 589 AI-SCMGQIICNLGDNL-GSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRAL 666 (1230)
T ss_dssp HH-HHHHHHHHHTGGGC-CTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHH
T ss_pred HH-HHHHHHHHHhCchh-hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHH
Confidence 33 45566665556554 56788888777666642110000 0 0 000 00 01235
Q ss_pred HHHHHHHHHHHHHhccCccccccchhhhhHHHHHHHHHHHHHHHhhhhCCCCChhHHHHHHHHHHHHhcCCC--CCCCCC
Q 001368 594 LSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPD--PVSYKS 671 (1091)
Q Consensus 594 r~~AL~aL~sFL~~~lt~d~~~~~~ll~~~~~~L~~aL~~ls~~~~~~~~~lk~~~~l~~~RiLq~y~~L~~--~~~~~~ 671 (1091)
|..|+.|+..++.+. ++.... ..+...+ . ...|-+...+.-.....++++..+.. |.....
T Consensus 667 r~~a~~al~~l~~~~--~~~~~~----~~v~~~l----~-------~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~ 729 (1230)
T 1u6g_C 667 KLGTLSALDILIKNY--SDSLTA----AMIDAVL----D-------ELPPLISESDMHVSQMAISFLTTLAKVYPSSLSK 729 (1230)
T ss_dssp HHHHHHHHHHHHHHC--CTTCCH----HHHHHHH----T-------TCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHHHHHHHhcc--cccCCH----HHHHHHH----H-------HHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHH
Confidence 556666666555543 110000 0000001 0 00011111111112234444444332 222211
Q ss_pred ChHHHHHHHhhhcCCCCccc--chhh---hhhhcccCCcccCCCCCCCchhHHhhhhhcCCCCCCCcccccccCCCCCCC
Q 001368 672 DHPQLIKLCTTPYRDASACE--ESSC---LRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQP 746 (1091)
Q Consensus 672 ~~~~LL~~~v~~Fsd~~~~~--~ss~---l~sl~~~~D~~lG~~l~~~d~~e~~L~~~~~~~d~~lp~l~~~~~~~~p~p 746 (1091)
....++..++....++.... ..++ .+.+...++ ....+++-+...... ++. +.+
T Consensus 730 ~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~--------~~~~~~~ll~~l~~~-------~~~------~~~ 788 (1230)
T 1u6g_C 730 ISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT--------NNLGYMDLLRMLTGP-------VYS------QST 788 (1230)
T ss_dssp TTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCC--------TTCSHHHHHHHHSTT-------TTT------C--
T ss_pred hHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCC--------CCCCHHHHHHHHhcc-------ccC------CCC
Confidence 22234444444444332110 0111 112222111 011122222111000 000 001
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCchhHhHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHH
Q 001368 747 ETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNS 826 (1091)
Q Consensus 747 ~p~~tsvVdasi~LF~~vFp~~~~k~q~s~LE~l~~~ik~~k~~~R~~Ai~vNv~~All~aLk~~~~~~~~~l~~~v~~~ 826 (1091)
......+...+-+.+|.+.-..++..+ .+++++...+++.+. ......+.+. ++..+.....-...++
T Consensus 789 ~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~l~----~l~~~g~~~~~~~~~~---- 856 (1230)
T 1u6g_C 789 ALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFIQDVKNSRS---TDSIRLLALL----SLGEVGHHIDLSGQLE---- 856 (1230)
T ss_dssp --CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTTTTTTTTTC---CHHHHHHHHH----HHHHHHHHSCCCSCTH----
T ss_pred ccccchhhHHHHHHHHHHHHhcchhhH-HHHHHHHHHhCCCCc---cHHHHHHHHH----HHHHhcccCCCccccc----
Confidence 002233445566777777766666655 566666555554321 1222233332 2222222111101133
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhcccccCCcchhHHHHHHHHHHHhhcCCcccccchhhHHHHHHHHhcCCCCchhHH
Q 001368 827 IQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMW 906 (1091)
Q Consensus 827 ~~~li~~~l~~~d~~~~~r~aa~l~~lv~~~dp~~Ra~~aLALG~I~r~vGgmas~~~l~t~v~iL~sL~~Dp~P~Vh~W 906 (1091)
+++.+.+.+.+++. ..|.+ .+-|||.+. .| +++..+..++...++. |.+++.
T Consensus 857 l~~~~~~~l~~~~~--~Vr~a-----------------Aa~aLg~l~--~~------~~~~~lp~ll~~l~~~-~~~~~~ 908 (1230)
T 1u6g_C 857 LKSVILEAFSSPSE--EVKSA-----------------ASYALGSIS--VG------NLPEYLPFVLQEITSQ-PKRQYL 908 (1230)
T ss_dssp HHHHHHHGGGCSCH--HHHHH-----------------HHHHHHHHH--HH------THHHHHHHHHHHHHSC-GGGHHH
T ss_pred HHHHHHHHhCCCCH--HHHHH-----------------HHHHhHHHh--cc------CHHHHHHHHHHHHhcc-chhhHH
Confidence 34555555555432 34444 677778775 22 3555666666665544 788999
Q ss_pred HHHHHHHHHHHhC-CCcccchhhhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhhCCCCCCchhhhHhhhccccCCCc
Q 001368 907 SLHGLLLTIEAAG-FSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSS 985 (1091)
Q Consensus 907 aL~aL~li~dsaG-~~f~~~v~stL~ll~~lll~~~~~~~~~~~~igr~l~alI~~LGPeLq~~s~~~~~~~~~~~~~~~ 985 (1091)
.++||.-+++.++ -...+|++..+..+++.+- .....++...++|+..++.... ..++-... ..+.+..
T Consensus 909 ~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~---~~~~~~r~~~a~~lg~l~~~~~------~~l~p~l~-~~l~~~~ 978 (1230)
T 1u6g_C 909 LLHSLKEIISSASVVGLKPYVENIWALLLKHCE---CAEEGTRNVVAECLGKLTLIDP------ETLLPRLK-GYLISGS 978 (1230)
T ss_dssp HHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCC---CSSTTHHHHHHHHHHHHHHSSG------GGTHHHHT-TTSSSSC
T ss_pred HHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhc---CcchhhHHHHHHHHhhhhccCh------HHHHHHHH-HHhcCCC
Confidence 9999999998754 3455665554443333221 1223467788888888877632 12222111 1222222
Q ss_pred ---hhHHHHHhHHhhhcccCccc--hhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccCchhhhh--hchHHHHHHhh
Q 001368 986 ---PKWSVRFTQQLVLFAPQAVS--VHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIE--ERIEGNLFHML 1056 (1091)
Q Consensus 986 ---~~eai~clQqL~lFAP~~v~--~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a~~v~~--~~le~~Lf~~L 1056 (1091)
..-++..+..+.-..|..++ +..+++.|...|..+++..|++|+.||..+++..+..+.+ ..+-..|+..+
T Consensus 979 ~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~ 1056 (1230)
T 1u6g_C 979 SYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNET 1056 (1230)
T ss_dssp HHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHh
Confidence 15566667777666666654 3444566667788999999999999999999998876643 24555555554
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.60 E-value=2.1e-10 Score=144.73 Aligned_cols=667 Identities=14% Similarity=0.109 Sum_probs=407.5
Q ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhH
Q 001368 61 WQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR 140 (1091)
Q Consensus 61 ~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~ 140 (1091)
.+..+++.|.+.+. .+.+-+|+.++.|++.+.+...+..--+.+..+...+. +.++..+.+|+.||+.+++..+..
T Consensus 87 ~~~~ik~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~---~~~~~~r~~al~~L~~i~~~~~~~ 162 (852)
T 4fdd_A 87 VTDFIKSECLNNIG-DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLD---SEDYNTCEGAFGALQKICEDSAEI 162 (852)
T ss_dssp HHHHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHS---CSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHhHHH
Confidence 45567788887765 45567899999999999998655555566777777776 335665668999999999999988
Q ss_pred Hhhc-----HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 001368 141 ITSG-----LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLK 215 (1091)
Q Consensus 141 l~s~-----~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~ 215 (1091)
+.+. ....+..+++.++..+..+|.+++.+|..++.+.+... .....++.+...+ ..+|.+..||..|++||.
T Consensus 163 ~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~-~~~~~~~l~~l~~-~~~d~~~~vr~~a~~~L~ 240 (852)
T 4fdd_A 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQAL-MLHIDSFIENLFA-LAGDEEPEVRKNVCRALV 240 (852)
T ss_dssp HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHH-HTSHHHHHHHHHH-HHTCCCHHHHHHHHHHHH
T ss_pred hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence 6542 67788888889998889999999999998876543211 1223456664333 478999999999999999
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhh
Q 001368 216 AFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALP 295 (1091)
Q Consensus 216 ~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~ 295 (1091)
.++... +.+-..-++.+...+++.+.+.+..||..+.+.+..+.-.... ++.-++ .+++.+- .+...
T Consensus 241 ~l~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~---------~~~~~~--~~~~l~p-~ll~~ 307 (852)
T 4fdd_A 241 MLLEVR-MDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC---------KDVLVR--HLPKLIP-VLVNG 307 (852)
T ss_dssp HHHHHC-HHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH---------HHHHTT--THHHHHH-HHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH---------HHHHHH--HHHHHHH-HHHHH
Confidence 999875 3332234778999999999999999999999998875411100 000000 1122221 11111
Q ss_pred h---------cccC---------CCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHHHH
Q 001368 296 F---------TRAN---------GAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALAC 357 (1091)
Q Consensus 296 f---------~r~~---------~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~ 357 (1091)
. .+.. ......+|...+.+...+...+|.. .+..+...+.+.+..+ +...|..
T Consensus 308 l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~------~~~~l~~~l~~~l~~~---~~~~R~a 378 (852)
T 4fdd_A 308 MKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE------LLPHILPLLKELLFHH---EWVVKES 378 (852)
T ss_dssp TSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG------GHHHHHHHHHHHHTCS---SHHHHHH
T ss_pred cCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHhcCC---CHHHHHH
Confidence 0 0110 0024667888888888888888752 2345555556665432 3444544
Q ss_pred HHHHHHHhhhccCCcHHH---HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHhcCCc
Q 001368 358 VLYILRIGVTDQMTEPTQ---RSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEV-PSEFKEVLDSTVVAAVSHSS 433 (1091)
Q Consensus 358 v~~ILr~~i~~~LgE~~Q---~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa-~~~~~~~l~d~l~~ll~hps 433 (1091)
.-+.|..... -.++.-+ .+++..+.+.+ .|+++.+-..+...++.+-..++.. .......+...++..+..++
T Consensus 379 a~~alg~i~~-~~~~~~~~~l~~~l~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~ 455 (852)
T 4fdd_A 379 GILVLGAIAE-GCMQGMIPYLPELIPHLIQCL--SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN 455 (852)
T ss_dssp HHHHHHHTTT-TTHHHHGGGHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHh-cchHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC
Confidence 4444333321 1222111 34555565554 4667666667888888887777643 34566778899999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhhccccCCcccchhhhhchHHHHHHHHHhhcCCCCCccCCch
Q 001368 434 QLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARL 513 (1091)
Q Consensus 434 ~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~alAALl~~~~~~pLgvp~~~ 513 (1091)
..||-+|+|+|..++...+..+.+.++.++..|-...+.. . ....
T Consensus 456 ~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~--------~--~~~~------------------------- 500 (852)
T 4fdd_A 456 KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY--------Q--HKNL------------------------- 500 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC--------C--HHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHh--------C--hHHH-------------------------
Confidence 9999999999999998887777777776666665442210 0 0000
Q ss_pred hHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHhh-ccCChhhHhhcHHHHHHHHHhhcCCCchhhhhhccchhhHHH
Q 001368 514 PKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLL-ASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKIC 592 (1091)
Q Consensus 514 ~~~V~~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLm-tl~~~~~Vk~hl~qLLlLWk~~l~~s~~~~~~~~~e~~~~L~ 592 (1091)
. .-.++.+.+..+.- .+..++|++.-+|-++-.|+..-... .+.
T Consensus 501 -~---------------------~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~--------~~~----- 545 (852)
T 4fdd_A 501 -L---------------------ILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDED--------KDL----- 545 (852)
T ss_dssp -H---------------------HHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTC--------TTH-----
T ss_pred -H---------------------HHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhccccc--------HHH-----
Confidence 0 00111111111111 11235677766777777776543110 011
Q ss_pred HHHHHHHHHHHHHHhccCccccccchhhhhHHHHHHHHHHHHHHHhhhhCCCCChhHHHHHHHHHHHHhcCCCCCCCCCC
Q 001368 593 VLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSD 672 (1091)
Q Consensus 593 ~r~~AL~aL~sFL~~~lt~d~~~~~~ll~~~~~~L~~aL~~ls~~~~~~~~~lk~~~~l~~~RiLq~y~~L~~~~~~~~~ 672 (1091)
| .++.|+....+.. .. ....|+.. ++
T Consensus 546 -~-~~~~~l~~i~~~~------g~-----~~~~~~~~---------------------i~-------------------- 571 (852)
T 4fdd_A 546 -F-PLLECLSSVATAL------QS-----GFLPYCEP---------------------VY-------------------- 571 (852)
T ss_dssp -H-HHHHHHHHHHHHH------GG-----GGHHHHHH---------------------HH--------------------
T ss_pred -H-HHHHHHHHHHHHH------hH-----hHHHHHHH---------------------HH--------------------
Confidence 1 2333332222110 00 00001100 00
Q ss_pred hHHHHHHHhhhcCCCCcccchhhhhhhcccCCcccCCCCCCCchhHHhhhhhcCCCCCCCcccccccCCCCCCCCCchhH
Q 001368 673 HPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKT 752 (1091)
Q Consensus 673 ~~~LL~~~v~~Fsd~~~~~~ss~l~sl~~~~D~~lG~~l~~~d~~e~~L~~~~~~~d~~lp~l~~~~~~~~p~p~p~~ts 752 (1091)
.
T Consensus 572 -----~-------------------------------------------------------------------------- 572 (852)
T 4fdd_A 572 -----Q-------------------------------------------------------------------------- 572 (852)
T ss_dssp -----H--------------------------------------------------------------------------
T ss_pred -----H--------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHhhcCCCchhHhHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHH
Q 001368 753 LVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFL 832 (1091)
Q Consensus 753 vVdasi~LF~~vFp~~~~k~q~s~LE~l~~~ik~~k~~~R~~Ai~vNv~~All~aLk~~~~~~~~~l~~~v~~~~~~li~ 832 (1091)
.+++.+.+++... . .......
T Consensus 573 ----------------------~~~~~l~~~l~~~------~----------------~~~~~~~--------------- 593 (852)
T 4fdd_A 573 ----------------------RCVNLVQKTLAQA------M----------------LNNAQPD--------------- 593 (852)
T ss_dssp ----------------------HHHHHHHHHHHHH------H----------------HHHHCTT---------------
T ss_pred ----------------------HHHHHHHHHHHHH------H----------------HhhcCCc---------------
Confidence 0111111110000 0 0000000
Q ss_pred HHHhcCCcchHHHHHHHhhcccccCCcchhHHHHHHHHHHHhhcCCcccccch--hhHHHHHHHHhcCCCCchhHHHHHH
Q 001368 833 SILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLV--PATVSSISLLAKTSIPGLQMWSLHG 910 (1091)
Q Consensus 833 ~~l~~~d~~~~~r~aa~l~~lv~~~dp~~Ra~~aLALG~I~r~vGgmas~~~l--~t~v~iL~sL~~Dp~P~Vh~WaL~a 910 (1091)
. ....|..+|....-++|.|-+..|+- ..+++ ..++..++...+|+.|.|+..+...
T Consensus 594 -------~-------------~~~~d~~~~~~~l~~l~~l~~~l~~~-~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~ 652 (852)
T 4fdd_A 594 -------Q-------------YEAPDKDFMIVALDLLSGLAEGLGGN-IEQLVARSNILTLMYQCMQDKMPEVRQSSFAL 652 (852)
T ss_dssp -------T-------------SCCCCTHHHHHHHHHHHHHHHHHGGG-GHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred -------c-------------cCCCcchHHHHHHHHHHHHHHHHhHh-HHHHhcCCcHHHHHHHHhCCCChhHHHHHHHH
Confidence 0 00011111222333444444444421 12223 4678889998999999999999999
Q ss_pred HHHHHHHhCCCcccchhhhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhhCCCCCCchh-hhHhhhccccCC-C----
Q 001368 911 LLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSI-FFSRCKVSAWQC-S---- 984 (1091)
Q Consensus 911 L~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~~~~~~igr~l~alI~~LGPeLq~~s~-~~~~~~~~~~~~-~---- 984 (1091)
+.-++...|..|.+|++..+..+.+.+ .++..+++...+..+..++..+|+++++--. ++.... ..+++ +
T Consensus 653 l~~l~~~~~~~~~~~l~~~lp~l~~~l---~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~-~~l~~~~~~~~ 728 (852)
T 4fdd_A 653 LGDLTKACFQHVKPCIADFMPILGTNL---NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLV-EIINRPNTPKT 728 (852)
T ss_dssp HHHHHHHCGGGTGGGHHHHHHHHHHTC---CTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHH-HHHTCSSCCHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHc---CccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-HHhCCCCCCch
Confidence 999998888889999888777777666 2334466777888888888889998876542 332221 11111 1
Q ss_pred chhHHHHHhHHhhhcccCccc--hhhHHHHHHHhhcC-CChHHHHHHHHHHHHHHccCchhhhh
Q 001368 985 SPKWSVRFTQQLVLFAPQAVS--VHSHVQTLLSTLSS-RQPILRHLAVSTLRHLIEKDPDSVIE 1045 (1091)
Q Consensus 985 ~~~eai~clQqL~lFAP~~v~--~~~lV~~L~~~L~S-~~~~Lr~aAv~cLrqL~qr~a~~v~~ 1045 (1091)
....++.++-+|...-|..|. ++.+++.+|..|.. .+...|..|+.+|.+|++.+|..+..
T Consensus 729 ~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~ 792 (852)
T 4fdd_A 729 LLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQ 792 (852)
T ss_dssp HHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred HHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHH
Confidence 237789999999999988773 78899999999964 66778999999999999999987654
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.56 E-value=2.8e-11 Score=152.73 Aligned_cols=482 Identities=14% Similarity=0.068 Sum_probs=310.6
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcch-----hHHhHHHHHHhh----------hcC--CC-------CC
Q 001368 64 KCEDALYSLLILGARRPVRHLASVAMGRIISKGDNIS-----VYSRVSSLQGFL----------SDG--KK-------SE 119 (1091)
Q Consensus 64 ~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~-----lfdtvn~l~~iL----------~~~--K~-------~s 119 (1091)
.+.+.+.+++. .+.+.+|.....++..+-..-.... +-+-+..+...+ ++. .| ++
T Consensus 256 ~l~~~l~~~~~-~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~ 334 (852)
T 4fdd_A 256 NIVEYMLQRTQ-DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISD 334 (852)
T ss_dssp HHHHHHHHHHT-CSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CC
T ss_pred HHHHHHHHHcc-CCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccccc
Confidence 34444444444 3567789999888887754321111 111222333333 111 00 11
Q ss_pred hHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhc
Q 001368 120 PQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAI 199 (1091)
Q Consensus 120 p~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~ 199 (1091)
.+.+.+|..||+.+.+.+|+.+ .+..+..+...+++.+...|.+++.+++.+.+|.+... .....++... .-..+
T Consensus 335 ~~vr~~a~~~L~~la~~~~~~~---~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~-~~~l~~~l~~-l~~~l 409 (852)
T 4fdd_A 335 WNLRKCSAAALDVLANVYRDEL---LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM-IPYLPELIPH-LIQCL 409 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHGGGG---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH-GGGHHHHHHH-HHHHT
T ss_pred chHHHHHHHHHHHHHHhccHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHH-HHHHc
Confidence 1223489999999999999754 56777888888888889999999999999999887543 3467888885 55568
Q ss_pred cCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCC
Q 001368 200 VDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFP 279 (1091)
Q Consensus 200 ~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~ 279 (1091)
.|....||.+|+.|+..+....++.....-++.+....++.+++++..||.+++.+|+.+.-..- +.
T Consensus 410 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~-~~------------ 476 (852)
T 4fdd_A 410 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC-TE------------ 476 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG-GG------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-Hh------------
Confidence 99999999999999998887532222344567888999999999999999999999999884322 11
Q ss_pred CCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhcc------C--CCcc
Q 001368 280 PAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRA------D--IFVD 351 (1091)
Q Consensus 280 ~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~------~--~~~~ 351 (1091)
-..-+++.+. .|..-+.+. ..+...-+..+...+...+|..+.. ..|...++..+.+ . ...
T Consensus 477 l~~~l~~ll~-~L~~~l~~~----~~~~~~~~~~ai~~l~~~~~~~~~~-----~~~~~~l~p~l~~~~~~l~d~~~~~- 545 (852)
T 4fdd_A 477 LVPYLAYILD-TLVFAFSKY----QHKNLLILYDAIGTLADSVGHHLNK-----PEYIQMLMPPLIQKWNMLKDEDKDL- 545 (852)
T ss_dssp GGGGHHHHHH-HHHHHHHHC----CHHHHHHHHHHHHHHHHHHGGGGCC-----HHHHHHHHHHHHHHHHHSCTTCTTH-
T ss_pred hHhHHHHHHH-HHHHHHHHh----ChHHHHHHHHHHHHHHHHhhhhhcc-----HHHHHHHHHHHHHHHHhcccccHHH-
Confidence 0012344443 344333332 2344445777888888888875432 4576666665541 1 111
Q ss_pred HHHHHHHHHHHHHhhhccCCcH-HH--HHHHHHHHhhcc----------c-CCCChhHHHHHHHHHHHHHHHhCCCchhh
Q 001368 352 SHALACVLYILRIGVTDQMTEP-TQ--RSFLVFLGKQLQ----------A-VDASPFMKIAALRTLSYTLKTLGEVPSEF 417 (1091)
Q Consensus 352 ~~~r~~v~~ILr~~i~~~LgE~-~Q--~~~~~~l~~~~~----------~-~~~s~~~lv~aL~el~~Ll~~LGsa~~~~ 417 (1091)
....+|+..|.+. +|..+-.- .+ ..++..+-+.+. . .++.+...+++++.++.+++.+|+...+.
T Consensus 546 ~~~~~~l~~i~~~-~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~ 624 (852)
T 4fdd_A 546 FPLLECLSSVATA-LQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQL 624 (852)
T ss_dssp HHHHHHHHHHHHH-HGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHHHHHHHH-HhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHH
Confidence 1234777777543 33322111 11 112222222111 1 12356678899999999999999877665
Q ss_pred H--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhhccccCCcccchhhhhchHHHHH
Q 001368 418 K--EVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVV 495 (1091)
Q Consensus 418 ~--~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~al 495 (1091)
. +.+.+.++.++.|++..||-.|.+++..++.++|..+.+.++.++..+..... .+... .+.... .++
T Consensus 625 ~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~------~~~~~--v~~~a~--~al 694 (852)
T 4fdd_A 625 VARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN------PEFIS--VCNNAT--WAI 694 (852)
T ss_dssp HHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCC------TTSHH--HHHHHH--HHH
T ss_pred hcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC------ccchH--HHHHHH--HHH
Confidence 4 57999999999999999999999999999999999999988887766654421 11111 222222 333
Q ss_pred HHHHhhcCCCCCccCCchhHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHhhccCChhhHhhcHHHHHHHHHhhcCC
Q 001368 496 AALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSG 575 (1091)
Q Consensus 496 AALl~~~~~~pLgvp~~~~~~V~~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~~~~~Vk~hl~qLLlLWk~~l~~ 575 (1091)
+.+....... .-|+ ...++..-.++|+++..+ ..-.+.+|+.||-|+. .+|++|..|++|++.-|.++++.
T Consensus 695 g~i~~~~~~~--~~p~--~~~il~~L~~~l~~~~~~----~~~~~~a~~~igrl~~-~~~~~~~~~l~~~~~~~~~~l~~ 765 (852)
T 4fdd_A 695 GEISIQMGIE--MQPY--IPMVLHQLVEIINRPNTP----KTLLENTAITIGRLGY-VCPQEVAPMLQQFIRPWCTSLRN 765 (852)
T ss_dssp HHHHHHHGGG--GGGG--THHHHHHHHHHHTCSSCC----HHHHHHHHHHHHHHHH-HCHHHHGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHh--HHHH--HHHHHHHHHHHhCCCCCC----chHHHHHHHHHHHHHH-hCHHHhCccHHHHHHHHHHHhcc
Confidence 3333333211 2222 357777778888865433 2456889999999998 48899999999999999999953
Q ss_pred CchhhhhhccchhhHHHHHHHHHHHHHHHHHh
Q 001368 576 NAEHIIKQHGDLTSKICVLSTAVDALTAFVRC 607 (1091)
Q Consensus 576 s~~~~~~~~~e~~~~L~~r~~AL~aL~sFL~~ 607 (1091)
.... +-|+.|..+|..-++.
T Consensus 766 ~~d~------------~e~~~a~~~l~~li~~ 785 (852)
T 4fdd_A 766 IRDN------------EEKDSAFRGICTMISV 785 (852)
T ss_dssp SCSS------------HHHHHHHHHHHHHHHH
T ss_pred cccc------------HHHHHHHHHHHHHHHh
Confidence 2111 1255666666665554
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.54 E-value=1.7e-09 Score=141.74 Aligned_cols=887 Identities=14% Similarity=0.091 Sum_probs=472.3
Q ss_pred HHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHh-HHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhH
Q 001368 62 QRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSR-VSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR 140 (1091)
Q Consensus 62 Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdt-vn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~ 140 (1091)
...+.+.|++.+. .+.+.+|+...+|++.+...-... .|+. +..+...|... + ++..+.+|+.|+|.+.+..|+.
T Consensus 173 ~~~ll~~l~~~L~-~~~~~vR~~a~~al~~l~~~~~~~-~~~~~l~~l~~~L~~~-~-~~~~r~~a~~~l~~l~~~~~~~ 248 (1230)
T 1u6g_C 173 HPSILTCLLPQLT-SPRLAVRKRTIIALGHLVMSCGNI-VFVDLIEHLLSELSKN-D-SMSTTRTYIQCIAAISRQAGHR 248 (1230)
T ss_dssp HHHHHHHHGGGGG-CSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHT-C-SSCSCTTHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHhccC-C-chhHHHHHHHHHHHHHHHhHHH
Confidence 3445555555554 356788999999999998864332 2544 67777777633 2 2333347999999999999999
Q ss_pred HhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhc---------------------
Q 001368 141 ITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAI--------------------- 199 (1091)
Q Consensus 141 l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~--------------------- 199 (1091)
+...+++++..+++.++..+..+|..++.+++.+++..|... .....++.....+...
T Consensus 249 ~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~ 327 (1230)
T 1u6g_C 249 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV-YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADG 327 (1230)
T ss_dssp GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC-HHHHHHHHHHHTTCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH-HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccc
Confidence 988899999999999998788899999999999999888654 2344555443222211
Q ss_pred ---------------cCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhcc
Q 001368 200 ---------------VDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGM 264 (1091)
Q Consensus 200 ---------------~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~ 264 (1091)
+|.+..||.+|++||..++...+..+ ..-++.+.....+.+.+.+..||.++.++++.++...-
T Consensus 328 ~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 406 (1230)
T 1u6g_C 328 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML-PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 406 (1230)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHTTCCTTH-HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHC
T ss_pred cccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhc
Confidence 12345689999999999998542111 22244556667777888899999999999999885432
Q ss_pred CCCCcCCCCCCCCCCCCCChHHHHHH-------HhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHH
Q 001368 265 NPQAQVQPKGKGPFPPAKKLEGGLQR-------HLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYA 337 (1091)
Q Consensus 265 ~~~~~~~~~~k~~~~~~k~~e~~l~~-------~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~ 337 (1091)
... ..+.+.....+.....+.+.. .+... ++. ...++|.++..+...++...+. .+.+ .+..++
T Consensus 407 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~-l~~---~~~~vr~~~~~~L~~l~~~~~~-~l~~--~l~~ll 477 (1230)
T 1u6g_C 407 PVQ--SWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ-MKE---KSVKTRQCCFNMLTELVNVLPG-ALTQ--HIPVLV 477 (1230)
T ss_dssp CC--------------CCCHHHHHHHHTTHHHHHHHHH-TTC---SCHHHHHHHHHHHHHHHHHSTT-TTGG--GHHHHH
T ss_pred ccc--ccccCccccccccchHHHHHHHhhHHHHHHHHH-hcc---CCHHHHHHHHHHHHHHHHHchh-hhHH--HHHHHH
Confidence 110 000000000000011111111 11111 222 3568898988888888887543 3332 235555
Q ss_pred HHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCcHHH----HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCC-
Q 001368 338 LQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQ----RSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGE- 412 (1091)
Q Consensus 338 ~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q----~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGs- 412 (1091)
..+.+.+.............+..+ ...+ +..|...- ..++..+.+.+ .|.+......++..++.+++.+|.
T Consensus 478 ~~l~~~L~d~~~~~~v~~~a~~~l-~~~~-~~~~~~~~~~~l~~llp~L~~~l--~d~~~~v~~~al~~l~~l~~~~~~~ 553 (1230)
T 1u6g_C 478 PGIIFSLNDKSSSSNLKIDALSCL-YVIL-CNHSPQVFHPHVQALVPPVVACV--GDPFYKITSEALLVTQQLVKVIRPL 553 (1230)
T ss_dssp HHHHHHTTCSSSCHHHHHHHHHHH-HHHH-HSSCGGGGHHHHTTTHHHHHHHH--TCSSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHcCCCCcchHHHHHHHHH-HHHH-HhCCHHHHHhHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHhcCc
Confidence 566666653322112222222222 1111 12333211 13444444433 344544445789999999999997
Q ss_pred ------CchhhHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhhccccCCcccch
Q 001368 413 ------VPSEFKEVLDSTVVAAV--SHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVE 484 (1091)
Q Consensus 413 ------a~~~~~~~l~d~l~~ll--~hps~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~~~~~~l~~~~~~~~~~~ 484 (1091)
...+..+.+.+.++..+ .+++..||-.|+.||..++........+.+..++..|..... .+ .
T Consensus 554 ~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~---~e---~---- 623 (1230)
T 1u6g_C 554 DQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLK---NE---I---- 623 (1230)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTT---SS---S----
T ss_pred ccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhc---cc---h----
Confidence 45577888999999999 788999999999999999999888777777777776644321 00 0
Q ss_pred hhhhchHHHHHHHHHhhcCCCCCccC-CchhHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHhhccCChhhHhhcHH
Q 001368 485 LDSLHGQATVVAALIFISPKLPLGYP-ARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVF 563 (1091)
Q Consensus 485 ~~~~~G~a~alAALl~~~~~~pLgvp-~~~~~~V~~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~~~~~Vk~hl~ 563 (1091)
.+ .+-..++..+... +..+. ......|+..-.+.++.... ..+..+++.+-.=+.. .|..+ ..+
T Consensus 624 ~r--~~~~~al~~i~~~----~~~~~~~~~~~~i~~~L~~~l~~~~~-----~~r~~a~~al~~l~~~-~~~~~---~~~ 688 (1230)
T 1u6g_C 624 TR--LTTVKALTLIAGS----PLKIDLRPVLGEGVPILASFLRKNQR-----ALKLGTLSALDILIKN-YSDSL---TAA 688 (1230)
T ss_dssp HH--HHHHHHHHHHTTC----SSCCCCHHHHHHHHHHHHHHTTSCCH-----HHHHHHHHHHHHHHHH-CCTTC---CHH
T ss_pred hH--HHHHHHHHHHHhC----ccccchHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhc-ccccC---CHH
Confidence 01 1122233322221 11111 23345555555555554322 3455555555333334 45333 356
Q ss_pred HHHHHHHhhcCCCchhhhhhccchhhHHHHHHHHHHHHHHHHHhccCcccc--ccchhhhhHHHHHHHHHHHHHHHhhhh
Q 001368 564 DILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAA--NSGILLQPVMVYLSRALSYISTIAAKE 641 (1091)
Q Consensus 564 qLLlLWk~~l~~s~~~~~~~~~e~~~~L~~r~~AL~aL~sFL~~~lt~d~~--~~~~ll~~~~~~L~~aL~~ls~~~~~~ 641 (1091)
++.-+|...+|-- . ..|+ +.+..++.++...++.. ++.. ..+.++..++..+ .
T Consensus 689 ~v~~~l~~ll~ll-----~-~~D~----~~~~~~~~~L~~l~~~~--~~~~~~~~~~~l~~~~~~l-------------~ 743 (1230)
T 1u6g_C 689 MIDAVLDELPPLI-----S-ESDM----HVSQMAISFLTTLAKVY--PSSLSKISGSILNELIGLV-------------R 743 (1230)
T ss_dssp HHHHHHTTCGGGS-----C-TTCH----HHHHHHHHHHHHHTTSC--GGGGGGTTTTTHHHHHHHH-------------T
T ss_pred HHHHHHHHHHhhc-----C-cchH----HHHHHHHHHHHHHHHhC--chhHHHhHHhHHHHHHHHH-------------c
Confidence 7777776665321 0 1233 24567777777666542 2111 0111122222211 0
Q ss_pred CCCCChhHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHhhhcCCCCc--ccc------hhhhhhhccc-CC--c-ccCC
Q 001368 642 LPNIKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASA--CEE------SSCLRLLLDK-RD--A-WLGP 709 (1091)
Q Consensus 642 ~~~lk~~~~l~~~RiLq~y~~L~~~~~~~~~~~~LL~~~v~~Fsd~~~--~~~------ss~l~sl~~~-~D--~-~lG~ 709 (1091)
.+.+.... ...++.+|..+.....-...+..++..+......++. ... ......+... ++ . .+..
T Consensus 744 ~~~~~~~~---~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 820 (1230)
T 1u6g_C 744 SPLLQGGA---LSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQ 820 (1230)
T ss_dssp CTTCCHHH---HHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTT
T ss_pred CcccchHH---HHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHH
Confidence 11112110 0112222322221100012334455555544332111 000 0011111110 00 0 0000
Q ss_pred ---CC--CCCchhHHhhh-----hhcCCCC-CCCcccccccCCCCCCCCCchhHHHHHHHHHHHHhhcCCCchhHhHHHH
Q 001368 710 ---WI--PGRDWFEDELC-----AFQGGKD-GLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLG 778 (1091)
Q Consensus 710 ---~l--~~~d~~e~~L~-----~~~~~~d-~~lp~l~~~~~~~~p~p~p~~tsvVdasi~LF~~vFp~~~~k~q~s~LE 778 (1091)
.+ +..+.--..+. ......| +..|.+...-...+. .+.-.|..+|...+|.+.+- +...++.
T Consensus 821 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~~~~l~---~~~~~Vr~aAa~aLg~l~~~----~~~~~lp 893 (1230)
T 1u6g_C 821 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFS---SPSEEVKSAASYALGSISVG----NLPEYLP 893 (1230)
T ss_dssp TTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGG---CSCHHHHHHHHHHHHHHHHH----THHHHHH
T ss_pred HHHHhCCCCccHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHhC---CCCHHHHHHHHHHhHHHhcc----CHHHHHH
Confidence 00 10110000000 0000000 001100000000000 01346777888888887632 2234556
Q ss_pred HHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHhcCCcchHHHHHHHhhcc-----
Q 001368 779 IIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDL----- 853 (1091)
Q Consensus 779 ~l~~~ik~~k~~~R~~Ai~vNv~~All~aLk~~~~~~~~~l~~~v~~~~~~li~~~l~~~d~~~~~r~aa~l~~l----- 853 (1091)
.+.+.+.+... .| ..++.+||.+.......--......+...+.+.+.+.|.......|.++|.+
T Consensus 894 ~ll~~l~~~~~-~~---------~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~ 963 (1230)
T 1u6g_C 894 FVLQEITSQPK-RQ---------YLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP 963 (1230)
T ss_dssp HHHHHHHSCGG-GH---------HHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG
T ss_pred HHHHHHhccch-hh---------HHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh
Confidence 66666655421 12 2345677766553221111222233333333433333322111122233332
Q ss_pred ----------cccCCcchhHHHHHHHHHHHhhcCCcccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcc
Q 001368 854 ----------TVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFV 923 (1091)
Q Consensus 854 ----------v~~~dp~~Ra~~aLALG~I~r~vGgmas~~~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~ 923 (1091)
....+|..|+.+.-+++.+....|.- ..++++..+.-++...+|+.+.|+-=++.++...+...+..+.
T Consensus 964 ~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~-~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 1042 (1230)
T 1u6g_C 964 ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQP-IDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIR 1042 (1230)
T ss_dssp GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCT-HHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchh-hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHH
Confidence 23566778876666666555554422 2357888888888888999999999999999999999888888
Q ss_pred cchhhhHHHHHHHhccC----------CCCCc-----hhHHHHHHHHHHHHHhhCCCCCCchhhhHhhhccccCCCc-hh
Q 001368 924 SHVQATLGLAMEILLSE----------ENGWV-----DLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSS-PK 987 (1091)
Q Consensus 924 ~~v~stL~ll~~lll~~----------~~~~~-----~~~~~igr~l~alI~~LGPeLq~~s~~~~~~~~~~~~~~~-~~ 987 (1091)
+|+...|-.+++...-. |+-|. +++...-.|+..++..-.+.++ ...++.....+..++++ ..
T Consensus 1043 ~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~-~~~~~~~~~~gl~d~~di~~ 1121 (1230)
T 1u6g_C 1043 DLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLD-IFEFLNHVEDGLKDHYDIKM 1121 (1230)
T ss_dssp GGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSC-HHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHcccCchHHHHH
Confidence 88877666665443111 11111 4555566666666665444443 33455554433333322 37
Q ss_pred HHHHHhHHhhhcccCcc--chhhHHHHHHHhhcC------------CChHHHHHHHHHHHHHHccC
Q 001368 988 WSVRFTQQLVLFAPQAV--SVHSHVQTLLSTLSS------------RQPILRHLAVSTLRHLIEKD 1039 (1091)
Q Consensus 988 eai~clQqL~lFAP~~v--~~~~lV~~L~~~L~S------------~~~~Lr~aAv~cLrqL~qr~ 1039 (1091)
-+..++++|.-=.|..| .++.++..|...|+. ++-.+.|.++.|...|-..-
T Consensus 1122 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~~~~ 1187 (1230)
T 1u6g_C 1122 LTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIP 1187 (1230)
T ss_dssp HHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 88888888888888877 667788888888742 56788899999998887543
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.52 E-value=6.5e-09 Score=130.16 Aligned_cols=721 Identities=11% Similarity=0.018 Sum_probs=383.7
Q ss_pred HHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCc-chhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHH-hh
Q 001368 62 QRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDN-ISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQF-GR 139 (1091)
Q Consensus 62 Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~-~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~-G~ 139 (1091)
+..+++.|.+.+...+ +.+ +.++.|++.+....-+ ...=+-+..+...+.+.+ .++..+.+|+.+++.+.+.. ++
T Consensus 88 ~~~ik~~ll~~l~~~~-~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~-~~~~~r~~al~~l~~l~~~~~~~ 164 (876)
T 1qgr_A 88 RREVKNYVLHTLGTET-YRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN-STEHMKESTLEAIGYICQDIDPE 164 (876)
T ss_dssp HHHHHHHHHHHTTTCC-SSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHhCCCc-HHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhcCHh
Confidence 4456667777776544 445 8999999999876211 111233446666665221 15666668999999999987 56
Q ss_pred HHhhcHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHHhcCCCCCchhHH-HHHHHHHHHHhccCcchHHHHHHHHHHHH
Q 001368 140 RITSGLLETTIIAAKLMKFN--EEFVRQEALLLLQNALEGSGGSAAASAY-SEAFRLIMRFAIVDKSFVVRIAGARCLKA 216 (1091)
Q Consensus 140 ~l~s~~~e~~~~llK~lK~~--~a~~R~~~l~~L~kil~g~g~~~~~~~~-~di~K~~~r~~~~Dks~~Vr~aAa~cL~~ 216 (1091)
.+....+..+..+.+.++.. +..+|..++.++..++..++...+.... ..+.+. ....+.|.+..||.+|++|+..
T Consensus 165 ~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~-l~~~~~~~~~~vr~~a~~~l~~ 243 (876)
T 1qgr_A 165 QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQV-VCEATQCPDTRVRVAALQNLVK 243 (876)
T ss_dssp HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH-HHHHTTCSSHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHH
Confidence 66777888888899999876 5789999999999998876633221122 236664 4445678889999999999999
Q ss_pred HHhhcCCCcccchhh-hHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCC---CCcCCCCCCCCCCCCCC-----hHHH
Q 001368 217 FAHIGGPCLGVGELD-NSATHCVKAIEDPIASVRDAFAEALGSLLALGMNP---QAQVQPKGKGPFPPAKK-----LEGG 287 (1091)
Q Consensus 217 l~~~~~~~~~~~dlE-~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~---~~~~~~~~k~~~~~~k~-----~e~~ 287 (1091)
++...+..+ ...++ .+..++++.+.+.+..+|..+.+.+..+.-..... .....+.+..+..+... +++.
T Consensus 244 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (876)
T 1qgr_A 244 IMSLYYQYM-ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYL 322 (876)
T ss_dssp HHHHSGGGC-HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHH
T ss_pred HHHHhHHHH-HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHH
Confidence 998753333 23455 78889999999999999999999998876432100 00000000000000001 1111
Q ss_pred HHHHhhhhhcccC---CCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHH
Q 001368 288 LQRHLALPFTRAN---GAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRI 364 (1091)
Q Consensus 288 l~~~Ls~~f~r~~---~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~ 364 (1091)
+. .+.....+.. .....++|.+...+...+...+|... +..++..+...+.
T Consensus 323 l~-~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~------~~~~l~~l~~~l~------------------- 376 (876)
T 1qgr_A 323 VP-ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI------VPHVLPFIKEHIK------------------- 376 (876)
T ss_dssp HH-HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG------HHHHHHHHHHHTT-------------------
T ss_pred hH-HHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh------HHHHHHHHHHHcc-------------------
Confidence 11 1111000000 01123444444444444444443210 1112211111111
Q ss_pred hhhccCCcHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHHhcCCchHHHHHHHHH
Q 001368 365 GVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLG-EVPSEFKEVLDSTVVAAVSHSSQLVRIEAALT 443 (1091)
Q Consensus 365 ~i~~~LgE~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LG-sa~~~~~~~l~d~l~~ll~hps~svRi~AA~c 443 (1091)
+++...--.++..++.+....+ ....+....+...++..+.+|+..||.+|+|+
T Consensus 377 -------------------------~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~ 431 (876)
T 1qgr_A 377 -------------------------NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431 (876)
T ss_dssp -------------------------CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred -------------------------CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1222222244444443332222 11113345678888999999999999999999
Q ss_pred HHHHHHhCCcch--hhHHHHHHHHHHhhhhhhccccCCcccchhhhhchHHHHHHHHHhhcC--------C----CCCcc
Q 001368 444 LRALAEVDPTCV--SGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISP--------K----LPLGY 509 (1091)
Q Consensus 444 Lr~~~~a~P~~~--~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~alAALl~~~~--------~----~pLgv 509 (1091)
|..++...|... .+.+...+..+-.... ++ ++--..-..+++.++.... . .....
T Consensus 432 l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-------~~----~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~ 500 (876)
T 1qgr_A 432 VGRICELLPEAAINDVYLAPLLQCLIEGLS-------AE----PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS 500 (876)
T ss_dssp HHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-------SC----HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSST
T ss_pred HHHHHHhCchhcccHHHHHHHHHHHHHHHc-------CC----HHHHHHHHHHHHHHHHHhhhccccccccccccchhhh
Confidence 999999876532 3444444443332211 01 1111223345556655432 0 01122
Q ss_pred CCchhHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHhhccCC---hhhHhhcHHHHHHHHHhhcCCCchhhhhhccc
Q 001368 510 PARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMP---KEELEDQVFDILSLWATLFSGNAEHIIKQHGD 586 (1091)
Q Consensus 510 p~~~~~~V~~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~~---~~~Vk~hl~qLLlLWk~~l~~s~~~~~~~~~e 586 (1091)
|+ ...++..=.++++....++. ..+ ..+.=-++.++...| ..|+....+.++..|...++..... ....|
T Consensus 501 ~~--~~~il~~L~~~l~~~~~~~~--~~r-~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~~d 573 (876)
T 1qgr_A 501 SS--FELIVQKLLETTDRPDGHQN--NLR-SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHI--QSTSD 573 (876)
T ss_dssp TT--HHHHHHHHHHHTTSCSSCST--THH-HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSC--CSTTH
T ss_pred Hh--HHHHHHHHHHHHhCcCcchh--hHH-HHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhcc--CChhh
Confidence 32 34566655666665432111 011 122223344443333 3455666777777787764211000 00111
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCccccccchhhhhHHHHHHHHHHHHHHHhhhhCCCCChhHHHHHHHHHHHHhcCCCC
Q 001368 587 LTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPDP 666 (1091)
Q Consensus 587 ~~~~L~~r~~AL~aL~sFL~~~lt~d~~~~~~ll~~~~~~L~~aL~~ls~~~~~~~~~lk~~~~l~~~RiLq~y~~L~~~ 666 (1091)
-...-++|..++.++..+.... . .. .+..|+
T Consensus 574 ~~~~~~~~~~~~~~l~~l~~~~--~---~~-----~~~~~~--------------------------------------- 604 (876)
T 1qgr_A 574 RIQFNDLQSLLCATLQNVLRKV--Q---HQ-----DALQIS--------------------------------------- 604 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS--C---HH-----HHHTTH---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--C---hh-----hhhHHH---------------------------------------
Confidence 1122345566666655544331 0 00 000011
Q ss_pred CCCCCChHHHHHHHhhhcCCCCcccchhhhhhhcccCCcccCCCCCCCchhHHhhhhhcCCCCCCCcccccccCCCCCCC
Q 001368 667 VSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQP 746 (1091)
Q Consensus 667 ~~~~~~~~~LL~~~v~~Fsd~~~~~~ss~l~sl~~~~D~~lG~~l~~~d~~e~~L~~~~~~~d~~lp~l~~~~~~~~p~p 746 (1091)
..++..++..+.++. +
T Consensus 605 -------~~l~~~l~~~l~~~~---------------~------------------------------------------ 620 (876)
T 1qgr_A 605 -------DVVMASLLRMFQSTA---------------G------------------------------------------ 620 (876)
T ss_dssp -------HHHHHHHHHHC--------------------------------------------------------------
T ss_pred -------HHHHHHHHHHHHhcc---------------C------------------------------------------
Confidence 012222222222100 0
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCchhHhHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHH
Q 001368 747 ETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNS 826 (1091)
Q Consensus 747 ~p~~tsvVdasi~LF~~vFp~~~~k~q~s~LE~l~~~ik~~k~~~R~~Ai~vNv~~All~aLk~~~~~~~~~l~~~v~~~ 826 (1091)
....+...++.+...++ ... ..+.+-+..
T Consensus 621 ----------------------~~~v~~~a~~~l~~l~~------------------------~~~----~~~~~~~~~- 649 (876)
T 1qgr_A 621 ----------------------SGGVQEDALMAVSTLVE------------------------VLG----GEFLKYMEA- 649 (876)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHH------------------------HHG----GGGGGGHHH-
T ss_pred ----------------------CCCccHHHHHHHHHHHH------------------------HHH----hhHHHHHHH-
Confidence 00011111111111110 000 001111111
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhcccccCCcchhHHHHHHHHHHHhhcCCcccccchhhHHHHHHHHhcC--CCCchh
Q 001368 827 IQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKT--SIPGLQ 904 (1091)
Q Consensus 827 ~~~li~~~l~~~d~~~~~r~aa~l~~lv~~~dp~~Ra~~aLALG~I~r~vGgmas~~~l~t~v~iL~sL~~D--p~P~Vh 904 (1091)
+...+...+.+. .++..|....-++|.|-+.+|. .-.+++..++..|+...++ .++.+.
T Consensus 650 ~~~~l~~~l~~~------------------~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~ 710 (876)
T 1qgr_A 650 FKPFLGIGLKNY------------------AEYQVCLAAVGLVGDLCRALQS-NIIPFCDEVMQLLLENLGNENVHRSVK 710 (876)
T ss_dssp HHHHHHHHHHHC------------------TTHHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHHTCTTSCGGGH
T ss_pred HHHHHHHHHcCc------------------chHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHhCCccccHHhh
Confidence 112222222222 1223333355567777777663 2335678888888888776 578899
Q ss_pred HHHHHHHHHHHHHhCCCcccchhhhHHHHHHHhccCC-CCCc-------hhHHHHHHHHHHHHHhhCCCC-------CCc
Q 001368 905 MWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEE-NGWV-------DLQQGVGRLINAIVAVLGPEL-------APG 969 (1091)
Q Consensus 905 ~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~-~~~~-------~~~~~igr~l~alI~~LGPeL-------q~~ 969 (1091)
..++.++..++...|..|.+|++..+..+.+.+-.+. .+.+ +++..+.+.+..++..+|+.. +..
T Consensus 711 ~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 790 (876)
T 1qgr_A 711 PQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLV 790 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGS
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHH
Confidence 9999999999999999999999988888877664322 1111 567778888888888888753 111
Q ss_pred hh----hhHhhhccccCC-----CchhHHHHHhHHhhhcccC-cc-ch--hhHHHHHHH-hhcCCChHHHHHHHHHHHHH
Q 001368 970 SI----FFSRCKVSAWQC-----SSPKWSVRFTQQLVLFAPQ-AV-SV--HSHVQTLLS-TLSSRQPILRHLAVSTLRHL 1035 (1091)
Q Consensus 970 s~----~~~~~~~~~~~~-----~~~~eai~clQqL~lFAP~-~v-~~--~~lV~~L~~-~L~S~~~~Lr~aAv~cLrqL 1035 (1091)
.. ++..+. ...++ .+...|+.|+-.|.-+-+. .+ +. +.+|+.|.. .|.++.+.+|.+|..++.++
T Consensus 791 ~~~~~~i~~~l~-~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 791 QPRVEFILSFID-HIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp GGGHHHHHHHHH-HHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 11 222111 11122 2237888999888877766 33 22 345666666 88888999999999999999
Q ss_pred HccCc
Q 001368 1036 IEKDP 1040 (1091)
Q Consensus 1036 ~qr~a 1040 (1091)
.|.++
T Consensus 870 ~~~~~ 874 (876)
T 1qgr_A 870 RKLKN 874 (876)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 87754
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.49 E-value=3.6e-08 Score=123.16 Aligned_cols=389 Identities=12% Similarity=0.041 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCc-chhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhH
Q 001368 62 QRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDN-ISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR 140 (1091)
Q Consensus 62 Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~-~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~ 140 (1091)
+..+++.|.+.+.. +.+.+|+-++++++.+....-+ ...=+-+..+.+.+.+++ ++..+.+|+.+++.+.+.++..
T Consensus 93 ~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~--~~~~r~~al~~l~~l~~~~~~~ 169 (861)
T 2bpt_A 93 KNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ--PENVKRASLLALGYMCESADPQ 169 (861)
T ss_dssp HHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS--CHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHcCChh
Confidence 34566777777654 4477799999999999876322 122334456666665211 5666668999999999988865
Q ss_pred ---HhhcHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 001368 141 ---ITSGLLETTIIAAKLMKFN--EEFVRQEALLLLQNALEGSGGSAA-ASAYSEAFRLIMRFAIVDKSFVVRIAGARCL 214 (1091)
Q Consensus 141 ---l~s~~~e~~~~llK~lK~~--~a~~R~~~l~~L~kil~g~g~~~~-~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL 214 (1091)
+....+..+..+.+.+... +..+|..+++++..++.-.+...+ +.....+.+. ....+.|.+..||.+|++|+
T Consensus 170 ~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~-l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 170 SQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV-VCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp SSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH-HHHHHTCSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHH-HHHHhcCCCHHHHHHHHHHH
Confidence 4567788888888888876 688999999999998764442221 1123446663 55567889999999999999
Q ss_pred HHHHhhcCCCcccchhh-hHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCCh----HHHHH
Q 001368 215 KAFAHIGGPCLGVGELD-NSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKL----EGGLQ 289 (1091)
Q Consensus 215 ~~l~~~~~~~~~~~dlE-~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~----e~~l~ 289 (1091)
..+....+.++ ...++ .+..++++.+++.+..+|..+.+.++.+.-............++.|....+-. ++.+.
T Consensus 249 ~~l~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 327 (861)
T 2bpt_A 249 CKIMSKYYTFM-KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVP 327 (861)
T ss_dssp HHHHHHHGGGC-HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHH
Confidence 99998753333 23455 78889999999999999999999999887542110000000011111000011 22221
Q ss_pred HHhhhhhcccCC---CCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhh
Q 001368 290 RHLALPFTRANG---AKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGV 366 (1091)
Q Consensus 290 ~~Ls~~f~r~~~---~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i 366 (1091)
.+...+.+... .....+|.....+...+...+|.. .+..++..+.+.+.+. +...|...-+.|....
T Consensus 328 -~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~------~~~~l~~~l~~~l~~~---~~~~r~~a~~~l~~i~ 397 (861)
T 2bpt_A 328 -NLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH------ILEPVLEFVEQNITAD---NWRNREAAVMAFGSIM 397 (861)
T ss_dssp -HHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG------GHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh------HHHHHHHHHHHHcCCC---ChhHHHHHHHHHHHHH
Confidence 22222222110 012468888888888888888742 2344555555555422 2334544444444433
Q ss_pred hccCC-cHHH---HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCC--chhhHHHHHHHHHHHhcCCchHHHHHH
Q 001368 367 TDQMT-EPTQ---RSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEV--PSEFKEVLDSTVVAAVSHSSQLVRIEA 440 (1091)
Q Consensus 367 ~~~Lg-E~~Q---~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa--~~~~~~~l~d~l~~ll~hps~svRi~A 440 (1091)
+-.+ +.-. .+++..+.+.+ .|+++.+-..++..++.+...++.. ..+..+.+.+.++..+.++ ..||.+|
T Consensus 398 -~~~~~~~~~~~l~~il~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a 473 (861)
T 2bpt_A 398 -DGPDKVQRTYYVHQALPSILNLM--NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNC 473 (861)
T ss_dssp -SSSCHHHHHHHHHHHHHHHHHGG--GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHH
Confidence 2222 2111 23455555544 3556666667888999999988864 2456777888999988776 8999999
Q ss_pred HHHHHHHHHhCC----cchhhHHHHHHHHHHhh
Q 001368 441 ALTLRALAEVDP----TCVSGLITYGVTTLNAL 469 (1091)
Q Consensus 441 A~cLr~~~~a~P----~~~~~ll~~~~~~L~~~ 469 (1091)
+|+|..++..++ ..+.+.++.++..|-..
T Consensus 474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~ 506 (861)
T 2bpt_A 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGA 506 (861)
T ss_dssp HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 999999998754 55556666555554433
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.26 E-value=2.1e-08 Score=119.32 Aligned_cols=419 Identities=15% Similarity=0.046 Sum_probs=252.7
Q ss_pred cCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHH
Q 001368 75 LGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAK 154 (1091)
Q Consensus 75 ~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK 154 (1091)
.++.+.+|...++++..++........=+-+..+...++ |+++..+.+|+.+||.+.+.+|.... .++.+..+.+
T Consensus 136 ~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~---d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~ 210 (588)
T 1b3u_A 136 GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCS---DDTPMVRRAAASKLGEFAKVLELDNV--KSEIIPMFSN 210 (588)
T ss_dssp TCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHT---CSCHHHHHHHHHHHHHHHHTSCHHHH--HHTHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhcHHhH--HHHHHHHHHH
Confidence 455667799999999999987654332222333333333 66788777999999999998887532 4667777888
Q ss_pred HhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHH
Q 001368 155 LMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSA 234 (1091)
Q Consensus 155 ~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~ 234 (1091)
.++..+..+|..++.+|.++....+. +....++.. .......|++..||.+|++|+..+....++- .-.+.+.
T Consensus 211 ~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~-~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~ 283 (588)
T 1b3u_A 211 LASDEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMP-TLRQAAEDKSWRVRYMVADKFTELQKAVGPE---ITKTDLV 283 (588)
T ss_dssp HHTCSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHH-HHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHhCCH---HHHHHHHHH-HHHHHccCCCHHHHHHHHHHHHHHHHHhCcc---cchhHHH
Confidence 88888899999999999999987762 333444555 3555678999999999999999998753210 1124577
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHH
Q 001368 235 THCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLS 314 (1091)
Q Consensus 235 tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~a 314 (1091)
..+.+.+.+++..||.+++++|+.+.... .+.. . .....++.+ ..+.. +++. .+.++|.+.+.+
T Consensus 284 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~---------~-~~~~~~~l~-p~l~~-~l~d---~~~~vR~~a~~~ 347 (588)
T 1b3u_A 284 PAFQNLMKDCEAEVRAAASHKVKEFCENL-SADC---------R-ENVIMSQIL-PCIKE-LVSD---ANQHVKSALASV 347 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHTS-CTTT---------H-HHHHHHTHH-HHHHH-HHTC---SCHHHHHHHHTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHh-Chhh---------h-hhHHHHHHH-HHHHH-HhcC---CCHHHHHHHHHH
Confidence 88889999999999999999999987332 1100 0 000011222 12211 2222 457899999988
Q ss_pred HHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHH-HHHHHHHHHhhhccCCcHH-HHHHHHHHHhhcccCCCC
Q 001368 315 WVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHAL-ACVLYILRIGVTDQMTEPT-QRSFLVFLGKQLQAVDAS 392 (1091)
Q Consensus 315 yv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r-~~v~~ILr~~i~~~LgE~~-Q~~~~~~l~~~~~~~~~s 392 (1091)
...+...+|.... ...+...+..++. +. +...| .++..+ ...+ +.+|... ...++..+.+.. .|.+
T Consensus 348 l~~l~~~~~~~~~-----~~~l~p~l~~~l~-d~--~~~Vr~~a~~~l-~~l~-~~~~~~~~~~~~lp~l~~~~--~d~~ 415 (588)
T 1b3u_A 348 IMGLSPILGKDNT-----IEHLLPLFLAQLK-DE--CPEVRLNIISNL-DCVN-EVIGIRQLSQSLLPAIVELA--EDAK 415 (588)
T ss_dssp GGGGHHHHCHHHH-----HHHTHHHHHHHHT-CS--CHHHHHHHHTTC-HHHH-HHSCHHHHHHHHHHHHHHHH--TCSS
T ss_pred HHHHHHHhhHhHH-----HHHHHHHHHHHhC-CC--chHHHHHHHHHH-HHHH-HhcCHHHHHHHHHHHHHHHh--cCCC
Confidence 8888888875211 1223333444443 22 23222 222111 1111 1223221 123444444433 2344
Q ss_pred hhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhhhhh
Q 001368 393 PFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALREN 472 (1091)
Q Consensus 393 ~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~~~~~~ 472 (1091)
...-..+++.++.+...+|... +.+.+...+++.+.+++..||-.|+.+|..++...+... .++.++..|....+
T Consensus 416 ~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~- 490 (588)
T 1b3u_A 416 WRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSG- 490 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTT-
T ss_pred chHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhh-
Confidence 3344578899999999998643 334678889999999999999999999999998765421 23333344433211
Q ss_pred hccccCCcccchhhhhchHHHHHHHHHhhcCCCCCccCCchhHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHhhcc
Q 001368 473 VSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLAS 552 (1091)
Q Consensus 473 l~~~~~~~~~~~~~~~~G~a~alAALl~~~~~~pLgvp~~~~~~V~~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl 552 (1091)
++. ...-.....+++.+...... ......++..-.++++... ..+|..++|.|- .+...
T Consensus 491 ------~~~---~~~R~~a~~~l~~l~~~~~~------~~~~~~~~~~l~~~l~d~~-----~~Vr~~a~~~l~-~l~~~ 549 (588)
T 1b3u_A 491 ------DPN---YLHRMTTLFCINVLSEVCGQ------DITTKHMLPTVLRMAGDPV-----ANVRFNVAKSLQ-KIGPI 549 (588)
T ss_dssp ------CSC---HHHHHHHHHHHHHHHHHHHH------HHHHHHTHHHHHHGGGCSC-----HHHHHHHHHHHH-HHGGG
T ss_pred ------CCC---HHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHhhCCCCC-----chHHHHHHHHHH-HHHHH
Confidence 011 11112334445444443221 1123445554455554332 247777888764 44433
Q ss_pred CChhhHh
Q 001368 553 MPKEELE 559 (1091)
Q Consensus 553 ~~~~~Vk 559 (1091)
.|+++..
T Consensus 550 ~~~~~~~ 556 (588)
T 1b3u_A 550 LDNSTLQ 556 (588)
T ss_dssp SCHHHHH
T ss_pred hchhhhH
Confidence 5777654
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.13 E-value=1.5e-06 Score=108.78 Aligned_cols=451 Identities=13% Similarity=0.049 Sum_probs=271.2
Q ss_pred ChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCC-CCCchhHHHHHHHHHHHH
Q 001368 119 EPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSG-GSAAASAYSEAFRLIMRF 197 (1091)
Q Consensus 119 sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g-~~~~~~~~~di~K~~~r~ 197 (1091)
+.+.+.+|..||+.+.+.+|+.+ .+..+..+...++..+..+|..++.+++.+..+.+ ... .....++... .-.
T Consensus 341 ~~~~r~~a~~~l~~l~~~~~~~~---~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~-~~~~~~~l~~-l~~ 415 (876)
T 1qgr_A 341 DWNPCKAAGVCLMLLATCCEDDI---VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL-KPLVIQAMPT-LIE 415 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGG---HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH-HHHHHHHHHH-HHH
T ss_pred ccHHHHHHHHHHHHHHHHCcHhh---HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHH-HHH
Confidence 34444589999999999999654 66777777888888889999999999999887766 212 2345666664 444
Q ss_pred hccCcchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCC
Q 001368 198 AIVDKSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKG 276 (1091)
Q Consensus 198 ~~~Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~ 276 (1091)
+++|....||.+|+.++..+....++.+ ...-++.+...+++.++++ ..||..++.+++.+............+..+.
T Consensus 416 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~ 494 (876)
T 1qgr_A 416 LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEP 494 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCC
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 5899999999999999999998743333 4456788999999999885 8899999999999986543110000000000
Q ss_pred CCC-CCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHH----hcc-----
Q 001368 277 PFP-PAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDM----LRA----- 346 (1091)
Q Consensus 277 ~~~-~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~l----l~~----- 346 (1091)
++. -..-+++.+. .|..-+.+.. ...+.+|..+.++...++...|.. ...|+..++.. +..
T Consensus 495 ~~~~l~~~~~~il~-~L~~~l~~~~-~~~~~~r~~~~~~l~~l~~~~~~~-------~~~~~~~l~~~l~~~l~~~~~~~ 565 (876)
T 1qgr_A 495 ATYCLSSSFELIVQ-KLLETTDRPD-GHQNNLRSSAYESLMEIVKNSAKD-------CYPAVQKTTLVIMERLQQVLQME 565 (876)
T ss_dssp CCCSSTTTHHHHHH-HHHHHTTSCS-SCSTTHHHHHHHHHHHHHHTCCST-------THHHHHHHHHHHHHHHHHHHTTT
T ss_pred cchhhhHhHHHHHH-HHHHHHhCcC-cchhhHHHHHHHHHHHHHHHCchh-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0113455553 5544444432 124789999999999999988852 23344443333 221
Q ss_pred C---CCccH----HHHHHHHHHHHHhhhccCC-cHHH---HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCch
Q 001368 347 D---IFVDS----HALACVLYILRIGVTDQMT-EPTQ---RSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPS 415 (1091)
Q Consensus 347 ~---~~~~~----~~r~~v~~ILr~~i~~~Lg-E~~Q---~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~ 415 (1091)
+ +..|. ..+.++...|...+ ..+| +.-+ -.++..+.+.+......+.+...++..++.++..+|..+.
T Consensus 566 ~~~~~~~d~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~ 644 (876)
T 1qgr_A 566 SHIQSTSDRIQFNDLQSLLCATLQNVL-RKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL 644 (876)
T ss_dssp TSCCSTTHHHHHHHHHHHHHHHHHHHH-TTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGG
T ss_pred hccCChhhHHHHHHHHHHHHHHHHHHH-HHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHH
Confidence 0 22221 12333333333323 3455 3322 3455555555543321134556899999999999999888
Q ss_pred hhHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhhccccCCcccchhhhhchHHHH
Q 001368 416 EFKEVLDSTVVAAVSHS-SQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATV 494 (1091)
Q Consensus 416 ~~~~~l~d~l~~ll~hp-s~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~a 494 (1091)
+..+.+...++..+.++ +..||..|.+|+..++.+....+.+.++.++..+-...+. ... . .+-..-...+
T Consensus 645 ~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~---~~~-~----~~~~~~~~~~ 716 (876)
T 1qgr_A 645 KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN---ENV-H----RSVKPQILSV 716 (876)
T ss_dssp GGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC---TTS-C----GGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCC---ccc-c----HHhhHHHHHH
Confidence 88888999999999998 8999999999999999988877777777666665444321 000 0 1111223344
Q ss_pred HHHHHhhcCCCCCccCCchhHHHHHHHHHHhhccCC--Ch----hhHHHHHH--HHHHHHHHhhccC----C--hhhHhh
Q 001368 495 VAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSR--NT----LAATVEKE--AGWLLLSSLLASM----P--KEELED 560 (1091)
Q Consensus 495 lAALl~~~~~~pLgvp~~~~~~V~~~A~~LLk~~~~--~~----~~a~~~~q--agWiLi~sLmtl~----~--~~~Vk~ 560 (1091)
++.+....... ..| ....++..-.+.++.... ++ .....+.. -+|.-|..-+.-. + .+.++.
T Consensus 717 l~~i~~~~g~~--~~~--~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 792 (876)
T 1qgr_A 717 FGDIALAIGGE--FKK--YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQP 792 (876)
T ss_dssp HHHHHHHHGGG--GGG--GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGG
T ss_pred HHHHHHHhchh--HHH--HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHH
Confidence 45554443322 222 234555555555543321 11 00112221 2222222111100 1 246778
Q ss_pred cHHHHHHHHHhhcCCCchhhhhhccchhhHHHHHHHHHHHHHHHHHhc
Q 001368 561 QVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCF 608 (1091)
Q Consensus 561 hl~qLLlLWk~~l~~s~~~~~~~~~e~~~~L~~r~~AL~aL~sFL~~~ 608 (1091)
++++++-+-+...... + .+-.+|..|+.||-....++
T Consensus 793 ~~~~i~~~l~~~~~~~---------~--~~~~vr~~a~~~l~~l~~~~ 829 (876)
T 1qgr_A 793 RVEFILSFIDHIAGDE---------D--HTDGVVACAAGLIGDLCTAF 829 (876)
T ss_dssp GHHHHHHHHHHHHTCS---------C--CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC---------C--CCHHHHHHHHHHHHHHHHHh
Confidence 8888887666654211 0 12357899999888777664
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.11 E-value=6.6e-08 Score=120.77 Aligned_cols=380 Identities=9% Similarity=0.017 Sum_probs=251.3
Q ss_pred HHHHHHHHHHHHhhcC------CCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHH
Q 001368 61 WQRKCEDALYSLLILG------ARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELY 134 (1091)
Q Consensus 61 ~Q~~l~~~L~~~l~~~------~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~ 134 (1091)
.-..+...|++.+... .-+-+|+..++||..+-..-....+-..+..+...+. +.++..+.+|+.++|.+.
T Consensus 321 ~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~---~~~~~~r~~a~~~l~~i~ 397 (861)
T 2bpt_A 321 SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNIT---ADNWRNREAAVMAFGSIM 397 (861)
T ss_dssp HHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcC---CCChhHHHHHHHHHHHHH
Confidence 3345555565555532 1245699999999888765333333444455555554 445776679999999998
Q ss_pred HHHh-hHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHHhccCcchHHHHHHHH
Q 001368 135 RQFG-RRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA-AASAYSEAFRLIMRFAIVDKSFVVRIAGAR 212 (1091)
Q Consensus 135 ~~~G-~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~-~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~ 212 (1091)
+..+ +.+....+..+..+++.++..+..+|..++.+++++.+.++... +.....++.....+ ++.|. ..||.+|+.
T Consensus 398 ~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~-~l~~~-~~v~~~a~~ 475 (861)
T 2bpt_A 398 DGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLI-GLQDH-PKVATNCSW 475 (861)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHH-HHTSC-HHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH-HhccC-hHHHHHHHH
Confidence 7766 66667778888999999998899999999999999999877432 24456777775444 46776 889999999
Q ss_pred HHHHHHhhcCC---CcccchhhhHHHHHHHhccC--CChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHH
Q 001368 213 CLKAFAHIGGP---CLGVGELDNSATHCVKAIED--PIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGG 287 (1091)
Q Consensus 213 cL~~l~~~~~~---~~~~~dlE~l~tl~~K~le~--s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~ 287 (1091)
++..+....+. ..-..-++.+...+++.+++ .+..+|.++.++++.+...... . ....+++.
T Consensus 476 al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~-~------------~~~~~~~l 542 (861)
T 2bpt_A 476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD-T------------VAETSASI 542 (861)
T ss_dssp HHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG-G------------GHHHHHHH
T ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch-h------------hHHHHHHH
Confidence 99998886421 11123356778888888885 3478999999999999854221 1 00012222
Q ss_pred HHHHhhhhhccc-------CC----CCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCC--CccHHH
Q 001368 288 LQRHLALPFTRA-------NG----AKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADI--FVDSHA 354 (1091)
Q Consensus 288 l~~~Ls~~f~r~-------~~----~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~--~~~~~~ 354 (1091)
+. .+...+.+. .+ ....++|.++..+...++..+|..+.. ....++..+.+.+.... .+...+
T Consensus 543 ~~-~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~l~~~l~~~l~~~~~~~v~~~~ 618 (861)
T 2bpt_A 543 ST-FVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP---VADMLMGLFFRLLEKKDSAFIEDDV 618 (861)
T ss_dssp HH-HHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG---GHHHHHHHHHHHHHSTTGGGTHHHH
T ss_pred HH-HHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHccCCCCcHHHHH
Confidence 21 111111110 00 013568899999999999999985432 12444445555555332 121122
Q ss_pred HHHHHHHHHHhhhccCCcHHH---HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcC
Q 001368 355 LACVLYILRIGVTDQMTEPTQ---RSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSH 431 (1091)
Q Consensus 355 r~~v~~ILr~~i~~~LgE~~Q---~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~h 431 (1091)
..++..+.. .+|+.-. .+++..+.+.++. .++..-..++..++.+...+|+...+..+.+.+.++..+.+
T Consensus 619 ~~~l~~l~~-----~~~~~~~~~l~~i~~~l~~~l~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 691 (861)
T 2bpt_A 619 FYAISALAA-----SLGKGFEKYLETFSPYLLKALNQ--VDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISN 691 (861)
T ss_dssp HHHHHHHHH-----HHGGGGHHHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCC
Confidence 234444432 1222211 2455556555533 33335567889999999999987777888899999999999
Q ss_pred Cc--hHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHhh
Q 001368 432 SS--QLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNAL 469 (1091)
Q Consensus 432 ps--~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~~~ 469 (1091)
++ ..+|..|.+|+..++...+....+.++.++..+-..
T Consensus 692 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~ 731 (861)
T 2bpt_A 692 PNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAA 731 (861)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred ccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 86 889999999999999998888888787777666543
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.08 E-value=9.6e-08 Score=113.65 Aligned_cols=342 Identities=13% Similarity=0.079 Sum_probs=227.6
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHH-hHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhh
Q 001368 65 CEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYS-RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITS 143 (1091)
Q Consensus 65 l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfd-tvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s 143 (1091)
+...|.+.++ .+-+-+|.....||+.+...-+.....+ .+..+...++ |+++..+.+|+.+||.+.+.+|...
T Consensus 204 l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~---d~~~~vR~~a~~~l~~l~~~~~~~~-- 277 (588)
T 1b3u_A 204 IIPMFSNLAS-DEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAE---DKSWRVRYMVADKFTELQKAVGPEI-- 277 (588)
T ss_dssp HHHHHHHHHT-CSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHT---CSSHHHHHHHHHTHHHHHHHHCHHH--
T ss_pred HHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHhCccc--
Confidence 3344444333 3456679999999988877543322222 2223333333 5567766689999999999888754
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCch-hHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcC
Q 001368 144 GLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAA-SAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGG 222 (1091)
Q Consensus 144 ~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~-~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~ 222 (1091)
..++.+..+.+.++..+..+|..+..+|..+...+|..... ....++... ....+.|.+..||.++++++..+....+
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~-l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 356 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC-IKELVSDANQHVKSALASVIMGLSPILG 356 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHH-HHHHHTCSCHHHHHHHHTTGGGGHHHHC
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 24567788888999889999999999999999999855321 345566663 5556889999999999999988876531
Q ss_pred CCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCC
Q 001368 223 PCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGA 302 (1091)
Q Consensus 223 ~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~ 302 (1091)
. ....+.+.....+.+.+.+.+||.++.+.++.+.... .+. ...+..+ ..+.. +.+.
T Consensus 357 ~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~-~~~--------------~~~~~~l-p~l~~-~~~d--- 413 (588)
T 1b3u_A 357 K---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI-GIR--------------QLSQSLL-PAIVE-LAED--- 413 (588)
T ss_dssp H---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS-CHH--------------HHHHHHH-HHHHH-HHTC---
T ss_pred H---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc-CHH--------------HHHHHHH-HHHHH-HhcC---
Confidence 1 0113457788888999999999999999999987431 100 0011222 12222 2222
Q ss_pred CcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHH----HHHHHHHHHhhhccCCcH-HHHH
Q 001368 303 KSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHAL----ACVLYILRIGVTDQMTEP-TQRS 377 (1091)
Q Consensus 303 ~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r----~~v~~ILr~~i~~~LgE~-~Q~~ 377 (1091)
...++|.++..+...+...+|..++. ..+...+...+..+ +...| .++..+.+. +|+. ....
T Consensus 414 ~~~~vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d~---~~~Vr~~a~~~l~~l~~~-----~~~~~~~~~ 480 (588)
T 1b3u_A 414 AKWRVRLAIIEYMPLLAGQLGVEFFD-----EKLNSLCMAWLVDH---VYAIREAATSNLKKLVEK-----FGKEWAHAT 480 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCGGGCC-----HHHHHHHHHGGGCS---SHHHHHHHHHHHHHHHHH-----HCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHcCHHHHH-----HHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHH-----hCchhHHHH
Confidence 46889999999999999999986543 34454555555422 22223 444444322 2332 1223
Q ss_pred HHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCc
Q 001368 378 FLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPT 453 (1091)
Q Consensus 378 ~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~ 453 (1091)
++..+.+.. .+++...-..++..++.+...+|.. .+.+.+...+++.+.+|...||..+++||..++.....
T Consensus 481 llp~l~~~~--~~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 481 IIPKVLAMS--GDPNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp THHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHh--hCCCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 444444322 3455555568899999998888753 35667888999999999999999999999999976544
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.07 E-value=4.1e-08 Score=113.16 Aligned_cols=196 Identities=13% Similarity=0.037 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCc-chhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHH-hh
Q 001368 62 QRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDN-ISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQF-GR 139 (1091)
Q Consensus 62 Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~-~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~-G~ 139 (1091)
+..+++.|.+.+...++ .+ +-++.|++.+.....+ ...-+-+..+...+.++. .++..+.+|+.+|+.+.+.+ |.
T Consensus 88 ~~~ik~~ll~~l~~~~~-~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~-~~~~~r~~al~~l~~l~~~~~~~ 164 (462)
T 1ibr_B 88 RREVKNYVLQTLGTETY-RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN-STEHMKESTLEAIGYICQDIDPE 164 (462)
T ss_dssp HHHHHHHHHHHTTCCCS-SS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHhCCCCc-hh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHhCCch
Confidence 34567778887766554 45 8899999999886322 233345566777776221 15666669999999999988 77
Q ss_pred HHhhcHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHHhcCCCCCchhHHHH-HHHHHHHHhccCcchHHHHHHHHHHHH
Q 001368 140 RITSGLLETTIIAAKLMKFN--EEFVRQEALLLLQNALEGSGGSAAASAYSE-AFRLIMRFAIVDKSFVVRIAGARCLKA 216 (1091)
Q Consensus 140 ~l~s~~~e~~~~llK~lK~~--~a~~R~~~l~~L~kil~g~g~~~~~~~~~d-i~K~~~r~~~~Dks~~Vr~aAa~cL~~ 216 (1091)
.+....+..+..+++.++.. +..+|.+++.++..++...+...+....++ +.. .......|.+..||.++++|+..
T Consensus 165 ~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 165 QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ-VVCEATQCPDTRVRVAALQNLVK 243 (462)
T ss_dssp GTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHH
Confidence 77777888999999999987 688999999999998764432221111222 344 34445778899999999999999
Q ss_pred HHhhcCCCcccchhh-hHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 001368 217 FAHIGGPCLGVGELD-NSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 217 l~~~~~~~~~~~dlE-~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
+....+.++ ..-++ .+..++++.+.+.+..+|..+.+.++.+.-.
T Consensus 244 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 244 IMSLYYQYM-ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHCGGGC-TTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 998753333 22345 6788888999999999999999988887643
No 12
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.46 E-value=8.7e-06 Score=86.96 Aligned_cols=182 Identities=20% Similarity=0.200 Sum_probs=141.2
Q ss_pred HHHHhhcCCCchhhHHHHHHHHHHhhc-CC--cchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcH
Q 001368 69 LYSLLILGARRPVRHLASVAMGRIISK-GD--NISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGL 145 (1091)
Q Consensus 69 L~~~l~~~~g~P~R~l~a~cla~l~~~-GD--~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~ 145 (1091)
+++.+ .+.-.-.|+-...+|..+-.. ++ ....-+.++.+...+. ||..+..+.+|+.|+|.+-..+|..+....
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~--kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVIT--KDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44433 345566788889999888775 22 1222344556666662 255666666899999999999999998889
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC-
Q 001368 146 LETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC- 224 (1091)
Q Consensus 146 ~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~- 224 (1091)
+.++..+++.++.....+|.++..+|..++...+ ..++... ...++.|++..||..++..+..++...+|-
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~-l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-------LEAQQES-IVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------HHHHHHH-HHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHH-HHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999889999999999999988653 2445553 344588999999999999999976653232
Q ss_pred cccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 001368 225 LGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1091)
Q Consensus 225 ~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa 261 (1091)
+....++.+...+++.+++++++||.++.++++.+..
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999873
No 13
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.36 E-value=4.5e-06 Score=89.19 Aligned_cols=184 Identities=14% Similarity=0.021 Sum_probs=142.0
Q ss_pred CCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 001368 117 KSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLM-KFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIM 195 (1091)
Q Consensus 117 ~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~l-K~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~ 195 (1091)
+++...|.+|+.+|+.+.+..++.....+.+.+..+.+.+ |..+..+|..++.+++.+..++|... ...+..+...+
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~-~~~~~~ilp~l- 103 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF-SNYASACVPSL- 103 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHH-
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHH-
Confidence 3455555689999999999866655566788999999999 68999999999999999999998655 56788888854
Q ss_pred HHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCC
Q 001368 196 RFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGK 275 (1091)
Q Consensus 196 r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k 275 (1091)
-..+.|+...||.+|+.++.+++... .++.+...+++.+++.|..+|..+...++.++... .|..
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~-------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~-~~~~------- 168 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYAST-------SLEAQQESIVESLSNKNPSVKSETALFIARALTRT-QPTA------- 168 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTS-------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-CGGG-------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc-CCCC-------
Confidence 44589999999999999999998864 26778889999999999999999999999988442 2210
Q ss_pred CCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccc
Q 001368 276 GPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLK 325 (1091)
Q Consensus 276 ~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~ 325 (1091)
.....++..+ ..|...... ...++|-....+...+...+|..
T Consensus 169 ---~~~~~l~~l~-p~l~~~l~D----~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 169 ---LNKKLLKLLT-TSLVKTLNE----PDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp ---CCHHHHHHHH-HHHHHHHTS----SCHHHHHHHHHHHHHHHHHHCHH
T ss_pred ---ccHHHHHHHH-HHHHHHhcC----CChHHHHHHHHHHHHHHHHcCHH
Confidence 0001223333 233333322 46899999999999999999963
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.31 E-value=9.8e-05 Score=84.77 Aligned_cols=382 Identities=12% Similarity=0.054 Sum_probs=219.8
Q ss_pred CCCchHHHHHHHHHHHhhccCChhhHHHHH-H-HHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCc--chh--HHhHH
Q 001368 33 SPDPLLCFDLLSDLISAIDEEPKESILLWQ-R-KCEDALYSLLILGARRPVRHLASVAMGRIISKGDN--ISV--YSRVS 106 (1091)
Q Consensus 33 ~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q-~-~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~--~~l--fdtvn 106 (1091)
++++.....-+..|.+.+.......++..- . .....|.+.+.....+.+|..+++||..+....+. ..+ -..+.
T Consensus 31 s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 110 (450)
T 2jdq_A 31 SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVP 110 (450)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHH
Confidence 445666666677777765422222233322 2 46777888877766788899999999999874321 111 13566
Q ss_pred HHHHhhhcCCCCChHhHHHHHHHHHHHHHHH--hhHHhhcHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCCc
Q 001368 107 SLQGFLSDGKKSEPQKVAGAAQCLGELYRQF--GRRITSGLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSAA 183 (1091)
Q Consensus 107 ~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~--G~~l~s~~~e~~~~llK~lK~-~~a~~R~~~l~~L~kil~g~g~~~~ 183 (1091)
.+..+++ +.++..+..|+.+||.+-... .+... .-...+..+++.++. .+..+|..++.+|.++.++.+....
T Consensus 111 ~L~~lL~---~~~~~vr~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 186 (450)
T 2jdq_A 111 IFIELLS---SEFEDVQEQAVWALGNIAGDSTMCRDYV-LDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE 186 (450)
T ss_dssp HHHHHTT---CSCHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred HHHHHHc---CCCHHHHHHHHHHHHHHccCCHHHHHHH-HHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 7777776 446766667999999876531 11111 012357778888886 5789999999999999987643333
Q ss_pred hhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchh-hhHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 001368 184 ASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGEL-DNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 184 ~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dl-E~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
.....++... .-..+.|.+..||..|+.++..+........ ..-. ..+...+++.+.+++..+|..++.+|+.+...
T Consensus 187 ~~~~~~~l~~-L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 187 FAKVSPCLNV-LSWLLFVSDTDVLADACWALSYLSDGPNDKI-QAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp GGGTGGGHHH-HHHHTTCCCHHHHHHHHHHHHHHTSSSHHHH-HHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHH-HHHHHccCCHHHHHHHHHHHHHHHCCCcHHH-HHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 3334556664 3344678888999999999998876420000 0000 13566777888999999999999999998621
Q ss_pred ccCCCCcCCCCCCCCCCCCCC-h-HHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcc-ccCCCCchh-hHHHH
Q 001368 263 GMNPQAQVQPKGKGPFPPAKK-L-EGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRL-KYFHPDSEL-QDYAL 338 (1091)
Q Consensus 263 ~~~~~~~~~~~~k~~~~~~k~-~-e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~-~~le~~~~~-~~y~~ 338 (1091)
. +. .... . .+.+. .|.. +++. ...++|.....+...+.. |. ...+. .. ..++.
T Consensus 265 ~--~~------------~~~~~~~~~~l~-~L~~-ll~~---~~~~vr~~a~~~L~~l~~--~~~~~~~~--~~~~~~l~ 321 (450)
T 2jdq_A 265 D--DI------------QTQVILNCSALQ-SLLH-LLSS---PKESIKKEACWTISNITA--GNRAQIQT--VIDANIFP 321 (450)
T ss_dssp C--HH------------HHHHHHTTTHHH-HHHH-HTTC---SSHHHHHHHHHHHHHHTT--SCHHHHHH--HHHTTHHH
T ss_pred C--hH------------HHHHHHHCccHH-HHHH-HHcC---CCHHHHHHHHHHHHHHHc--CCHHHHHH--HHHCCCHH
Confidence 1 00 0000 0 01221 2221 2222 235666655544444322 11 00000 00 13444
Q ss_pred HHHHHhccCCCccHHHHHHHHHHHHHhhhccCCcHHH----HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCC--
Q 001368 339 QVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQ----RSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGE-- 412 (1091)
Q Consensus 339 ~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q----~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGs-- 412 (1091)
.+++++... +...|+.+-+.|.......-.|..| ..++..+++.+... ++.+...++..+..++..-..
T Consensus 322 ~L~~~l~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~ 396 (450)
T 2jdq_A 322 ALISILQTA---EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM--DSKIVQVALNGLENILRLGEQEA 396 (450)
T ss_dssp HHHHHHHHS---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhh
Confidence 555665532 2334444444444444211011122 12445555554433 444555788888888764321
Q ss_pred -----CchhhHHHH-----HHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001368 413 -----VPSEFKEVL-----DSTVVAAVSHSSQLVRIEAALTLRALA 448 (1091)
Q Consensus 413 -----a~~~~~~~l-----~d~l~~ll~hps~svRi~AA~cLr~~~ 448 (1091)
...+..+.+ .+.+..++.||++.||-.|...|..+-
T Consensus 397 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 397 KRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 112333333 578899999999999999999888775
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.28 E-value=0.00076 Score=77.35 Aligned_cols=329 Identities=11% Similarity=0.019 Sum_probs=196.8
Q ss_pred HHHHHHHHHhhcC-CCchhhHHHHHHHHHHhhcCCcch------hHHh--------H-HHHHHhhhcCCCCChHhHHHHH
Q 001368 64 KCEDALYSLLILG-ARRPVRHLASVAMGRIISKGDNIS------VYSR--------V-SSLQGFLSDGKKSEPQKVAGAA 127 (1091)
Q Consensus 64 ~l~~~L~~~l~~~-~g~P~R~l~a~cla~l~~~GD~~~------lfdt--------v-n~l~~iL~~~K~~sp~~~~aA~ 127 (1091)
.....|..++... ..+.+|...+..|-.+....++.. .|.. + +.+...+. +.++.. ..+.
T Consensus 35 ~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~~~v-~~~~ 110 (462)
T 1ibr_B 35 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLG---TETYRP-SSAS 110 (462)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT---CCCSSS-CSHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhC---CCCchh-hHHH
Confidence 3445566677665 467889999999999876532110 1111 1 12333333 222223 3688
Q ss_pred HHHHHHHHHHhhHHhhcHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCc--c
Q 001368 128 QCLGELYRQFGRRITSGLLETTIIAAKLMKFN--EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDK--S 203 (1091)
Q Consensus 128 ~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~--~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dk--s 203 (1091)
.|++.+....+.. ...++.+..++..+.+. ....|..++.+|+++++...+..-......+.+. +-.++.|. +
T Consensus 111 ~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~-l~~~l~~~~~~ 187 (462)
T 1ibr_B 111 QCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA-IIQGMRKEEPS 187 (462)
T ss_dssp HHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHH-HHHHHSTTCCC
T ss_pred HHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHH-HHHHhCCCCCC
Confidence 9999998876542 35678888889999887 7899999999999999876322224456677774 55567887 7
Q ss_pred hHHHHHHHHHHHHHHhhcCCCcccchh-hhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCC
Q 001368 204 FVVRIAGARCLKAFAHIGGPCLGVGEL-DNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAK 282 (1091)
Q Consensus 204 ~~Vr~aAa~cL~~l~~~~~~~~~~~dl-E~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k 282 (1091)
..||.+|++|+..+......-+....+ +.+.....+.+.+++..+|.++.++|+.+.-.... . -. .
T Consensus 188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~-~--~~----------~ 254 (462)
T 1ibr_B 188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ-Y--ME----------T 254 (462)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG-G--CT----------T
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH-H--HH----------H
Confidence 999999999998865321000000111 22466666788899999999999999998855321 1 00 0
Q ss_pred ChH-HHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhcc---C--C---CccHH
Q 001368 283 KLE-GGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRA---D--I---FVDSH 353 (1091)
Q Consensus 283 ~~e-~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~---~--~---~~~~~ 353 (1091)
.++ +.+. ++...+ +. ...++|......|..+....- .+...-.. . . ....+
T Consensus 255 ~~~~~l~~-~~~~~~-~~---~~~~v~~~a~~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~ 314 (462)
T 1ibr_B 255 YMGPALFA-ITIEAM-KS---DIDEVALQGIEFWSNVCDEEM---------------DLAIEASEAAEQGRPPEHTSKFY 314 (462)
T ss_dssp TTTTTHHH-HHHHHH-HC---SSHHHHHHHHHHHHHHHHHHH---------------HHHHHHCCTTCSSSCSSCCCCCH
T ss_pred HHHHHHHH-HHHHHH-cC---CchHHHHHHHHHHHHHHHHHH---------------HHHHhcccccccCCCccchhHHH
Confidence 122 3332 222222 22 346788777766655543320 00000000 0 0 00001
Q ss_pred HHHHHHHHHHHhhhccCCcHHHHHHHHHHHhhcccC-----CCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Q 001368 354 ALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAV-----DASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAA 428 (1091)
Q Consensus 354 ~r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~~-----~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~l 428 (1091)
.+.++..+ +..+.+.+... +.+...-.+|...++.|...+|. .+...+...+.+.
T Consensus 315 ~~~~~~~l-----------------~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~ 374 (462)
T 1ibr_B 315 AKGALQYL-----------------VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEH 374 (462)
T ss_dssp HHHHHHHH-----------------HHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHH
T ss_pred HHHHhhhc-----------------cHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHH
Confidence 11111112 11222222111 11222345888889999999884 4555677888889
Q ss_pred hcCCchHHHHHHHHHHHHHHHhCC
Q 001368 429 VSHSSQLVRIEAALTLRALAEVDP 452 (1091)
Q Consensus 429 l~hps~svRi~AA~cLr~~~~a~P 452 (1091)
+.+++..+|.+|..+|..++....
T Consensus 375 l~~~~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 375 IKNPDWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred hcCCChHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999997554
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.18 E-value=0.00041 Score=79.53 Aligned_cols=349 Identities=10% Similarity=0.004 Sum_probs=201.8
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHHhhcC-Cc--chhH---HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHH---HH
Q 001368 67 DALYSLLILGARRPVRHLASVAMGRIISKG-DN--ISVY---SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYR---QF 137 (1091)
Q Consensus 67 ~~L~~~l~~~~g~P~R~l~a~cla~l~~~G-D~--~~lf---dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~---~~ 137 (1091)
..|.+.+. ++.+.+|...+++|..+.+.. ++ ..+. ..+..+...++. ++++..+..|+.+|+.+.. ..
T Consensus 23 ~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~--~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 23 SDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKR--KENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp HHHHHHHH-SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTC--TTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCC--CCCHHHHHHHHHHHHHHhcCCHHH
Confidence 34555553 445667888888888876632 22 1122 246677777752 2256655689999998875 22
Q ss_pred hhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHH
Q 001368 138 GRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIV-DKSFVVRIAGARCLKA 216 (1091)
Q Consensus 138 G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~-Dks~~Vr~aAa~cL~~ 216 (1091)
-+.+. -...+..+++.+++.+..+|..++.+|.++........+.-+..++.....+ .+. |.+..||..|+.||..
T Consensus 100 ~~~~~--~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 100 TRIVI--QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQ-LFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH-HTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHH--hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHH-HhcCCCCHHHHHHHHHHHHH
Confidence 22222 1347888999999988999999999999987632100000011123332233 345 5889999999999999
Q ss_pred HHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCCh--HHHHHHHhhh
Q 001368 217 FAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKL--EGGLQRHLAL 294 (1091)
Q Consensus 217 l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~--e~~l~~~Ls~ 294 (1091)
+.....+.....-+......+++.+.+.+..+|..++.+|+.+.... +.. ...+ .+.+. .|..
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~--~~~------------~~~~~~~~~i~-~L~~ 241 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP--NDK------------IQAVIDAGVCR-RLVE 241 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS--HHH------------HHHHHHTTTHH-HHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC--cHH------------HHHHHHcCcHH-HHHH
Confidence 99753232222223567778888999999999999999999876210 000 0000 01111 1111
Q ss_pred hhcccCCCCcchhHHHHHHHHHHHHHHhccc---cCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCC
Q 001368 295 PFTRANGAKSKNMRVNLTLSWVYFLQAIRLK---YFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMT 371 (1091)
Q Consensus 295 ~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~---~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~Lg 371 (1091)
+++. ...++|.....+...+...-+.. .++ ...+..++.++..+ +...|+.+-+.|..... |
T Consensus 242 -ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-----~~~l~~L~~ll~~~---~~~vr~~a~~~L~~l~~---~ 306 (450)
T 2jdq_A 242 -LLMH---NDYKVVSPALRAVGNIVTGDDIQTQVILN-----CSALQSLLHLLSSP---KESIKKEACWTISNITA---G 306 (450)
T ss_dssp -HTTC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHT-----TTHHHHHHHHTTCS---SHHHHHHHHHHHHHHTT---S
T ss_pred -HHCC---CchhHHHHHHHHHHHHhhCChHHHHHHHH-----CccHHHHHHHHcCC---CHHHHHHHHHHHHHHHc---C
Confidence 2222 34677776666655553321100 000 12444566666542 34444444444444332 2
Q ss_pred cHHHH------HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCC-chh-hHHHHHHHHHHHhcCCchHHHHHHHHH
Q 001368 372 EPTQR------SFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEV-PSE-FKEVLDSTVVAAVSHSSQLVRIEAALT 443 (1091)
Q Consensus 372 E~~Q~------~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa-~~~-~~~~l~d~l~~ll~hps~svRi~AA~c 443 (1091)
...+. .++..+++.+.. .++.+-..|...++.+...-... ... +..++...|+.++.+++..||..|.|+
T Consensus 307 ~~~~~~~~~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 384 (450)
T 2jdq_A 307 NRAQIQTVIDANIFPALISILQT--AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNG 384 (450)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 22222 233444444433 34444556777777777642110 011 234688899999999999999999999
Q ss_pred HHHHHHhCCc
Q 001368 444 LRALAEVDPT 453 (1091)
Q Consensus 444 Lr~~~~a~P~ 453 (1091)
|..++...|.
T Consensus 385 L~~l~~~~~~ 394 (450)
T 2jdq_A 385 LENILRLGEQ 394 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhchh
Confidence 9999976554
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.13 E-value=0.00062 Score=80.86 Aligned_cols=351 Identities=11% Similarity=-0.014 Sum_probs=204.9
Q ss_pred HHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcch---hH--HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHH---HH
Q 001368 66 EDALYSLLILGARRPVRHLASVAMGRIISKGDNIS---VY--SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYR---QF 137 (1091)
Q Consensus 66 ~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~---lf--dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~---~~ 137 (1091)
...|.+.|.. .-+.+|...+.+|..+.+.++... +. ..+..|..+|+ . ++++..+..|+.+|+.+.. ..
T Consensus 89 i~~lv~~L~s-~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~-~-~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 89 LPQMTQQLNS-DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR-E-NQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp HHHHHHHHSC-SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTS-T-TSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhC-C-CCCHHHHHHHHHHHHHHhCCCHHH
Confidence 4555555543 356778889999999988753221 11 24566777775 1 1256655678999998765 22
Q ss_pred hhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 001368 138 GRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAF 217 (1091)
Q Consensus 138 G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l 217 (1091)
.+.+. -...+..+++.+++.+..+|..++.+|.++........+.-....+... .-..+.|.+..||..|+.||..|
T Consensus 166 ~~~~~--~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~-L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 166 TKVVV--DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHH--HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHH-HHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHH--HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHH-HHHHhccCCHHHHHHHHHHHHHH
Confidence 22221 1245777888888888999999999999987531100000011122332 22336678889999999999999
Q ss_pred HhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChH-HHHHHHhhhhh
Q 001368 218 AHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLE-GGLQRHLALPF 296 (1091)
Q Consensus 218 ~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e-~~l~~~Ls~~f 296 (1091)
.....+.....-.+.+...+++.+.+.+..+|..++.+|+.+.... +. . ...-.+ +++. .|.. +
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~--~~-~----------~~~~~~~~~v~-~Lv~-l 307 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP--QE-A----------IQAVIDVRIPK-RLVE-L 307 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC--HH-H----------HHHHHHTTCHH-HHHH-G
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--HH-H----------HHHHHhcCcHH-HHHH-H
Confidence 9764233322334567788889999999999999999999987210 00 0 000000 1111 1111 2
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHhcc---ccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCcH
Q 001368 297 TRANGAKSKNMRVNLTLSWVYFLQAIRL---KYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEP 373 (1091)
Q Consensus 297 ~r~~~~~~r~~R~Gv~~ayv~fl~~lg~---~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE~ 373 (1091)
++. ...++|.....+...+...-+. ..++ ..++..++.++..+ +...|+.+-+.|..... +..
T Consensus 308 L~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-----~~~l~~L~~lL~~~---~~~vr~~A~~aL~~l~~---~~~ 373 (530)
T 1wa5_B 308 LSH---ESTLVQTPALRAVGNIVTGNDLQTQVVIN-----AGVLPALRLLLSSP---KENIKKEACWTISNITA---GNT 373 (530)
T ss_dssp GGC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHH-----TTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTT---SCH
T ss_pred HCC---CChhhHHHHHHHHHHHHcCCHHHHHHHHH-----cchHHHHHHHHcCC---CHHHHHHHHHHHHHHHc---CCH
Confidence 222 3466776666555544321110 0000 13444566666543 34444444444444332 222
Q ss_pred HHH------HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCch---h-hHHHHHHHHHHHhcCCchHHHHHHHHH
Q 001368 374 TQR------SFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPS---E-FKEVLDSTVVAAVSHSSQLVRIEAALT 443 (1091)
Q Consensus 374 ~Q~------~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~---~-~~~~l~d~l~~ll~hps~svRi~AA~c 443 (1091)
.|. .++..+++.+.. +++.+-..|+..++.+...-+..+. . ...++.+.|+.++.+++..||..|.++
T Consensus 374 ~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~a 451 (530)
T 1wa5_B 374 EQIQAVIDANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDA 451 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 232 123344443322 3445566888888888876322111 1 233578899999999999999999999
Q ss_pred HHHHHHhCCc
Q 001368 444 LRALAEVDPT 453 (1091)
Q Consensus 444 Lr~~~~a~P~ 453 (1091)
|..++...|.
T Consensus 452 L~~l~~~~~~ 461 (530)
T 1wa5_B 452 LENILKMGEA 461 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 9999976554
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.04 E-value=0.0016 Score=77.37 Aligned_cols=392 Identities=13% Similarity=0.062 Sum_probs=225.7
Q ss_pred HHHHHhhhccCCCCchHHHHHHHHHHHhhccCChhhHHH-HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCc--
Q 001368 22 LESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILL-WQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDN-- 98 (1091)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~-~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~-- 98 (1091)
++.++..-. ++++.....-+..|.+.+...+...++. .+......|.+++.....+.+|...+.||..+-+..+.
T Consensus 89 i~~lv~~L~--s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLN--SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHS--CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 444444432 3456666677777777765432222221 12345666767666555677899999999999874321
Q ss_pred chh--HHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHH---HhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 001368 99 ISV--YSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQ---FGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQN 173 (1091)
Q Consensus 99 ~~l--fdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~---~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~k 173 (1091)
..+ -..+..+..+|+ +.++..+..|+.+||.+... ..+.+.. ...+..+++.++..+..+|..++.+|..
T Consensus 167 ~~~~~~g~i~~Lv~lL~---~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLY---TGSVEVKEQAIWALGNVAGDSTDYRDYVLQ--CNAMEPILGLFNSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHTTCHHHHHHHHH---HCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCccchHHHHH--cCcHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 122 245777888886 33566566799999988642 2222221 2467778888988788899999999999
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhh-hHHHHHHHhccCCChhHHHHH
Q 001368 174 ALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELD-NSATHCVKAIEDPIASVRDAF 252 (1091)
Q Consensus 174 il~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE-~l~tl~~K~le~s~~~vR~a~ 252 (1091)
+..+.+..........+... .-..+.|.+..||..|+.+|..+.... +-....-++ .+...+++.+.+++..+|..+
T Consensus 242 L~~~~~~~~~~~~~~~~l~~-L~~lL~~~d~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a 319 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPT-LAKLIYSMDTETLVDACWAISYLSDGP-QEAIQAVIDVRIPKRLVELLSHESTLVQTPA 319 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHH-HHHHTTCCCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HhCCCCCCCcHHHHHhHHHH-HHHHHcCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhcCcHHHHHHHHCCCChhhHHHH
Confidence 99876434434445566664 333467888999999999999998653 100000011 456677888899999999999
Q ss_pred HHHHHHHHHhccCCCCcCCCCCCCCCCCCCC-hH-HHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCC
Q 001368 253 AEALGSLLALGMNPQAQVQPKGKGPFPPAKK-LE-GGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPD 330 (1091)
Q Consensus 253 A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~-~e-~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~ 330 (1091)
..+|+.+.... +. .... .+ +.+. .|.. +++. ...++|.....+...+... ...+...
T Consensus 320 ~~~L~~l~~~~--~~------------~~~~~~~~~~l~-~L~~-lL~~---~~~~vr~~A~~aL~~l~~~-~~~~~~~- 378 (530)
T 1wa5_B 320 LRAVGNIVTGN--DL------------QTQVVINAGVLP-ALRL-LLSS---PKENIKKEACWTISNITAG-NTEQIQA- 378 (530)
T ss_dssp HHHHHHHTTSC--HH------------HHHHHHHTTHHH-HHHH-HTTC---SCHHHHHHHHHHHHHHTTS-CHHHHHH-
T ss_pred HHHHHHHHcCC--HH------------HHHHHHHcchHH-HHHH-HHcC---CCHHHHHHHHHHHHHHHcC-CHHHHHH-
Confidence 99999976211 00 0000 00 1111 2221 2222 2356666555554444321 0111000
Q ss_pred chhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhc--cCCcHHH----HHHHHHHHhhcccCCCChhHHHHHHHHHH
Q 001368 331 SELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTD--QMTEPTQ----RSFLVFLGKQLQAVDASPFMKIAALRTLS 404 (1091)
Q Consensus 331 ~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~--~LgE~~Q----~~~~~~l~~~~~~~~~s~~~lv~aL~el~ 404 (1091)
......+..+++++... +...++.+.+.|...... ...|..+ ..++..+++.+.. .++.....++..+.
T Consensus 379 ~~~~~~l~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~al~aL~ 453 (530)
T 1wa5_B 379 VIDANLIPPLVKLLEVA---EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI--ADNRIIEVTLDALE 453 (530)
T ss_dssp HHHTTCHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT--CCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhcC---CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 00012333455555432 233444444444444321 0012222 1234444444433 35555667888888
Q ss_pred HHHHHhCC-------Cchhh-----HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001368 405 YTLKTLGE-------VPSEF-----KEVLDSTVVAAVSHSSQLVRIEAALTLRALA 448 (1091)
Q Consensus 405 ~Ll~~LGs-------a~~~~-----~~~l~d~l~~ll~hps~svRi~AA~cLr~~~ 448 (1091)
.++..-.. ...+. ..+..+.|..++.||+..||-.|.+.|..+.
T Consensus 454 ~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 454 NILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred HHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 88875321 11222 1236789999999999999999999998877
No 19
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.02 E-value=0.0046 Score=75.38 Aligned_cols=364 Identities=11% Similarity=0.037 Sum_probs=186.0
Q ss_pred HHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHh
Q 001368 63 RKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRIT 142 (1091)
Q Consensus 63 ~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~ 142 (1091)
+.+...+.+.+.. +.|-+|+.++.|+.++|.+ ++-.+-+-++.+.+.|+ |.+|....+|+..|+++.+.-.+. .
T Consensus 141 ~~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~-~p~~v~~~~~~l~~lL~---D~d~~V~~~Al~~L~~i~~~~~~~-~ 214 (618)
T 1w63_A 141 RDLAGEVEKLLKT-SNSYLRKKAALCAVHVIRK-VPELMEMFLPATKNLLN---EKNHGVLHTSVVLLTEMCERSPDM-L 214 (618)
T ss_dssp HHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHH-CGGGGGGGGGGTTTSTT---CCCHHHHHHHHHHHHHHCCSHHHH-H
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHH-ChHHHHHHHHHHHHHhC---CCCHhHHHHHHHHHHHHHHhChHH-H
Confidence 4556677666664 6688899999999999985 44433333344445554 667887778999999887543321 1
Q ss_pred hcHHHHHHHHHHHhcc---------------CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH---HHHH--hccCc
Q 001368 143 SGLLETTIIAAKLMKF---------------NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRL---IMRF--AIVDK 202 (1091)
Q Consensus 143 s~~~e~~~~llK~lK~---------------~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~---~~r~--~~~Dk 202 (1091)
..+...+..+++.++. .+..++..++++|++.... ++...++++.. ..+. ...+.
T Consensus 215 ~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~-----~~~~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 215 AHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN-----DDDSSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp HHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT-----CHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhccccccch
Confidence 1122233334444442 2566777788777775432 22223333332 1111 01123
Q ss_pred chHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccC--CCCc--------CCC
Q 001368 203 SFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMN--PQAQ--------VQP 272 (1091)
Q Consensus 203 s~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~--~~~~--------~~~ 272 (1091)
+..|...|++|+..+... ..-.+.....+.+++++++..+|-.+-.+|+.+....-. .+-. ..+
T Consensus 290 ~~aV~~ea~~~i~~l~~~------~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d 363 (618)
T 1w63_A 290 GNAILYETVLTIMDIKSE------SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLD 363 (618)
T ss_dssp HHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSC
T ss_pred HHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCC
Confidence 456777777766543211 111233455555666666667777766666666533100 0000 000
Q ss_pred -CCCCCC-------CCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHh
Q 001368 273 -KGKGPF-------PPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDML 344 (1091)
Q Consensus 273 -~~k~~~-------~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll 344 (1091)
..|+.+ ......++.+. -|.. |+.. ...++|..+..+....-....+ +...|+..+++++
T Consensus 364 ~~Ir~~alelL~~l~~~~nv~~iv~-eL~~-~l~~---~d~e~r~~~v~~I~~la~k~~~-------~~~~~v~~ll~lL 431 (618)
T 1w63_A 364 VSIKRRAMELSFALVNGNNIRGMMK-ELLY-FLDS---CEPEFKADCASGIFLAAEKYAP-------SKRWHIDTIMRVL 431 (618)
T ss_dssp HHHHHHHHHHHHHHCCSSSTHHHHH-HHHH-HHHH---CCHHHHHHHHHHHHHHHHSSCC-------CHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcccccHHHHHH-HHHH-HHHh---CCHHHHHHHHHHHHHHHHHhCc-------cHHHHHHHHHHHH
Confidence 000000 00012233332 2222 3333 3578888877777666554332 2467888888888
Q ss_pred ccCC-CccHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhhccc-CCCChh--HHHHHHHHHHHHHHHhCCCch-----
Q 001368 345 RADI-FVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQA-VDASPF--MKIAALRTLSYTLKTLGEVPS----- 415 (1091)
Q Consensus 345 ~~~~-~~~~~~r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~-~~~s~~--~lv~aL~el~~Ll~~LGsa~~----- 415 (1091)
.... .+....-.++ ++.+.. .+..|..++..+++.+.. ....+. ..+-.|.|.+.++.. |....
T Consensus 432 ~~~~~~v~~~~~~~l----~~ii~~--~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~-~~~~~~~~~~ 504 (618)
T 1w63_A 432 TTAGSYVRDDAVPNL----IQLITN--SVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVS-GQCEEEEPIQ 504 (618)
T ss_dssp HHTGGGSCSSHHHHH----HHHHHH--SCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTT-CCCSSSCCCC
T ss_pred HhccchhHHHHHHHH----HHHHhc--ChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcc-cccccccccC
Confidence 7432 1211111222 333321 223445566666665543 222221 122345555555543 21100
Q ss_pred hhHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhCCcchhhHHHHHH
Q 001368 416 EFKEVLDSTVVAAVS--HSSQLVRIEAALTLRALAEVDPTCVSGLITYGV 463 (1091)
Q Consensus 416 ~~~~~l~d~l~~ll~--hps~svRi~AA~cLr~~~~a~P~~~~~ll~~~~ 463 (1091)
.....+.+.+..++. ..+..||.++.+++-.|....|.. .+.+..++
T Consensus 505 ~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~-~~~l~~~L 553 (618)
T 1w63_A 505 VTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT-VNRIKKVV 553 (618)
T ss_dssp CCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch-HHHHHHHH
Confidence 011224444545443 578999999999998888888865 34444443
No 20
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00023 Score=77.03 Aligned_cols=178 Identities=13% Similarity=0.033 Sum_probs=134.9
Q ss_pred CCCchhhHHHHHHHHH-Hhhc---CC--cchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHh-hHHh-hcHHH
Q 001368 76 GARRPVRHLASVAMGR-IISK---GD--NISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFG-RRIT-SGLLE 147 (1091)
Q Consensus 76 ~~g~P~R~l~a~cla~-l~~~---GD--~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G-~~l~-s~~~e 147 (1091)
++-.-.|+-...+|.. +... -. ....-+.+..|...+. ||..+..+.+|+.|||++-+.+| ..+. .....
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~--~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ 104 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ--KDANIQAVALAAQSVELICDKLKTPGFSKDYVSL 104 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 4455557777777777 6632 11 1222344556666772 25567666689999999999999 7887 78889
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCc----hhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCC
Q 001368 148 TTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAA----ASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGP 223 (1091)
Q Consensus 148 ~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~----~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~ 223 (1091)
++..++-.+|.....+|.++..++..+++.++..+. +.+..++.. ++..+...||..++.++..++..++.
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~-----~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILE-----HMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHH-----HTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHH-----HHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 999999999998899999999999999998863221 234444444 47778899999999999999988632
Q ss_pred C--cccchh-hhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 224 C--LGVGEL-DNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 224 ~--~~~~dl-E~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
. -....+ +.+...+.|.+++++.+||.++.++++.+.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1 112357 789999999999999999999999999987
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.95 E-value=0.0025 Score=77.20 Aligned_cols=167 Identities=13% Similarity=0.038 Sum_probs=112.3
Q ss_pred CCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHH
Q 001368 76 GARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKL 155 (1091)
Q Consensus 76 ~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~ 155 (1091)
++-+..|++..-.+..+. +.++-.+.-.+|.+.+-++ +.+|..+..|+.+||.+. +. ...+..+..+.+.
T Consensus 60 s~~~~~Krl~yl~l~~~~-~~~~e~~~l~~n~l~kdL~---~~n~~ir~~AL~~L~~i~---~~---~~~~~l~~~l~~~ 129 (591)
T 2vgl_B 60 TDNLELKKLVYLYLMNYA-KSQPDMAIMAVNSFVKDCE---DPNPLIRALAVRTMGCIR---VD---KITEYLCEPLRKC 129 (591)
T ss_dssp SSCHHHHHHHHHHHHHHH-HHSHHHHHTTHHHHGGGSS---SSSHHHHHHHHHHHHTCC---SG---GGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHc-ccCchHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHcCC---hH---HHHHHHHHHHHHH
Confidence 355666888888887654 4455555666676666554 567777778998888663 22 2345566778889
Q ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCC--CcccchhhhH
Q 001368 156 MKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGP--CLGVGELDNS 233 (1091)
Q Consensus 156 lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~--~~~~~dlE~l 233 (1091)
++..++.+|..+..++.++.+.......+ .++.. ..+..+.|++..||.+|+.+|..+..+.+. ++.. ....
T Consensus 130 L~d~~~~VRk~A~~al~~i~~~~p~~~~~---~~~~~-~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l--~~~~ 203 (591)
T 2vgl_B 130 LKDEDPYVRKTAAVCVAKLHDINAQMVED---QGFLD-SLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL--NPQN 203 (591)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHSSCCCHHH---HHHHH-HHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC--HHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhhChhhccc---ccHHH-HHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc--cHHH
Confidence 99889999999999999999943321111 23444 466679999999999999999999887521 1111 1123
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHH
Q 001368 234 ATHCVKAIEDPIASVRDAFAEALGS 258 (1091)
Q Consensus 234 ~tl~~K~le~s~~~vR~a~A~~Lg~ 258 (1091)
..-.++.+.+.+.-.+..+-++++.
T Consensus 204 ~~~Ll~~l~~~~~~~q~~il~~l~~ 228 (591)
T 2vgl_B 204 INKLLTALNECTEWGQIFILDCLSN 228 (591)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCchHHHHHHHHHHH
Confidence 3344556667787788777665543
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.95 E-value=0.0032 Score=74.51 Aligned_cols=394 Identities=13% Similarity=0.040 Sum_probs=229.1
Q ss_pred HHHHHHHhhhccCCCCchHHHHHHHHHHHhhccCChhhHH-HHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCc
Q 001368 20 AQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESIL-LWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDN 98 (1091)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~f~~L~~L~~~l~~~~k~di~-~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~ 98 (1091)
..++.+|..-. ++++...++-+..|.+.+...+...+. -.+......|.+++.....+.+|...+.||..+-+..+.
T Consensus 74 ~~l~~lv~~L~--s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 74 ESLPAMIGGVY--SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp -CHHHHHHHHT--SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 34666666553 446777777777777776554412222 123356777778777665588899999999999885322
Q ss_pred --chhH--HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHH---HhhHHhhcHHHHHHHHHHHhc-cCcHHHHHHHHHH
Q 001368 99 --ISVY--SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQ---FGRRITSGLLETTIIAAKLMK-FNEEFVRQEALLL 170 (1091)
Q Consensus 99 --~~lf--dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~---~G~~l~s~~~e~~~~llK~lK-~~~a~~R~~~l~~ 170 (1091)
..+. ..+..|..+|+ +.++..+..|+.+||.+-.. .-+.+.. ...+..+++.++ ..+..+|..+..+
T Consensus 152 ~~~~~~~~g~i~~L~~lL~---~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~--~g~l~~Ll~lL~~~~~~~v~~~a~~~ 226 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLG---SSSDDVREQAVWALGNVAGDSPKCRDLVLA--NGALLPLLAQLNEHTKLSMLRNATWT 226 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHTCHHHHHHHHH--TTCHHHHHHTCCTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhc---CCCHHHHHHHHHHHHHHhCCChhhHHHHHH--CCcHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1222 25677778786 34566555799999988642 1112211 135677888884 4678899999999
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhh-hHHHHHHHhccCCChhHH
Q 001368 171 LQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELD-NSATHCVKAIEDPIASVR 249 (1091)
Q Consensus 171 L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE-~l~tl~~K~le~s~~~vR 249 (1091)
|..+..+-... .......+... .-..+.+.+..|+..|+.+|..+.... +-....=++ .+...+++.+.+++..+|
T Consensus 227 L~~L~~~~~~~-~~~~~~~~l~~-L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~v~~Lv~lL~~~~~~v~ 303 (528)
T 4b8j_A 227 LSNFCRGKPQP-SFEQTRPALPA-LARLIHSNDEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLLHPSPSVL 303 (528)
T ss_dssp HHHHHCSSSCC-CHHHHTTHHHH-HHHHTTCCCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTCHHHHHHHTTCSCHHHH
T ss_pred HHHHHcCCCCC-cHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCHHHHHHHHHcCCChhHH
Confidence 99999875322 34455666664 334477888999999999999887542 100000011 356678888999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccc-cCC
Q 001368 250 DAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLK-YFH 328 (1091)
Q Consensus 250 ~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~-~le 328 (1091)
..++.+|+.+........ + .... .+++. .|..- ++.. ...++|...+.+...+.. |.. ...
T Consensus 304 ~~a~~~L~nl~~~~~~~~---~--------~~~~-~~~l~-~L~~l-L~~~--~~~~v~~~A~~~L~nl~~--~~~~~~~ 365 (528)
T 4b8j_A 304 IPALRTVGNIVTGDDAQT---Q--------CIID-HQALP-CLLSL-LTQN--LKKSIKKEACWTISNITA--GNKDQIQ 365 (528)
T ss_dssp HHHHHHHHHHTTSCHHHH---H--------HHHT-TTHHH-HHHHH-HHSC--CCHHHHHHHHHHHHHHHT--SCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHH---H--------HHHH-hhhHH-HHHHH-HcCC--CcHHHHHHHHHHHHHHHC--CCHHHHH
Confidence 999999999873211000 0 0000 01221 22221 1221 145666655555444432 110 000
Q ss_pred CCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCcHHHH------HHHHHHHhhcccCCCChhHHHHHHHH
Q 001368 329 PDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQR------SFLVFLGKQLQAVDASPFMKIAALRT 402 (1091)
Q Consensus 329 ~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q~------~~~~~l~~~~~~~~~s~~~lv~aL~e 402 (1091)
. ......+..+++++... +...++.+.+.|...... |.+.+. .++..+++.+.. .++.....++..
T Consensus 366 ~-~~~~~~i~~L~~lL~~~---~~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~~al~~ 437 (528)
T 4b8j_A 366 A-VINAGIIGPLVNLLQTA---EFDIKKEAAWAISNATSG--GSHDQIKYLVSEGCIKPLCDLLIC--PDIRIVTVCLEG 437 (528)
T ss_dssp H-HHHTTCHHHHHHHHHHS---CHHHHHHHHHHHHHHHHH--SCHHHHHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHH
T ss_pred H-HHHCCCHHHHHHHHhcC---CHHHHHHHHHHHHHHHcC--CCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHH
Confidence 0 00012233455666533 344444444444443321 223332 234445554433 344566688899
Q ss_pred HHHHHHHhCC-------Cchhh-----HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 001368 403 LSYTLKTLGE-------VPSEF-----KEVLDSTVVAAVSHSSQLVRIEAALTLRALAE 449 (1091)
Q Consensus 403 l~~Ll~~LGs-------a~~~~-----~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~ 449 (1091)
+..++..-.. ...+. ..+..+.+..+..|++..|+-.|.+.|..|..
T Consensus 438 L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 438 LENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9888865432 11122 12356789999999999999999999998873
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.95 E-value=0.0037 Score=75.76 Aligned_cols=366 Identities=13% Similarity=0.088 Sum_probs=208.1
Q ss_pred HHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhH--HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhH
Q 001368 63 RKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVY--SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR 140 (1091)
Q Consensus 63 ~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lf--dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~ 140 (1091)
+.+...+.+.+. .+-|-+|+-++.|+.++|..+.. .+- +-++.+...|+ |.+|..+.+|+.+|+++.+.-++.
T Consensus 120 ~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p~-~~~~~~~~~~l~~lL~---d~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 120 EYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHDINAQ-MVEDQGFLDSLRDLIA---DSNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp HHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTS---CSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhhChh-hcccccHHHHHHHHhC---CCChhHHHHHHHHHHHHHhhCCCc
Confidence 445566766665 56788899999999999996533 322 35667888776 667887778999999887654332
Q ss_pred -HhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHh
Q 001368 141 -ITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAH 219 (1091)
Q Consensus 141 -l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~ 219 (1091)
.....+..+.-+++.+.....-++..+++++++ .+.. ++...+++... ....+.+++..|+..|++|+..+..
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~----l~~~-~~~~~~~~l~~-l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSN----YNPK-DDREAQSICER-VTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHT----SCCC-SHHHHHHHHHH-HTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHH----hCCC-ChHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHHHhh
Confidence 234455667777777776667788888887765 4433 34456778774 6667889999999999999987754
Q ss_pred hc--CCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCC----CCCC-------------
Q 001368 220 IG--GPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKG----PFPP------------- 280 (1091)
Q Consensus 220 ~~--~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~----~~~~------------- 280 (1091)
.. .+-.-..-.+.+...++ .+-+++..+|..+-+.++.+.... |... .+.-+. ...+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~L~-~L~~~d~~vr~~aL~~l~~i~~~~--p~~~-~~~~~~~~~~~~d~~~Ir~~al~~L~~ 344 (591)
T 2vgl_B 269 LLPKDSDYYNMLLKKLAPPLV-TLLSGEPEVQYVALRNINLIVQKR--PEIL-KQEIKVFFVKYNDPIYVKLEKLDIMIR 344 (591)
T ss_dssp SCCBTTBSHHHHHHHTHHHHH-HHTTSCHHHHHHHHHHHHHHHHHC--CSTT-TTCTTTTSCCTTSCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHH-HHhcCCccHHHHHHHHHHHHHHhC--hHHH-HHHHHhheeccCChHHHHHHHHHHHHH
Confidence 21 01000000123333333 344588999999999999988542 2211 111000 0000
Q ss_pred ---CCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHHHH
Q 001368 281 ---AKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALAC 357 (1091)
Q Consensus 281 ---~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~ 357 (1091)
....++.+. .|. .|++. ...++|.-+..+...+...... ....|+..+++++.... +.....+
T Consensus 345 l~~~~nv~~iv~-~L~-~~l~~---~d~~~r~~~v~aI~~la~~~~~-------~~~~~v~~Ll~ll~~~~--~~v~~e~ 410 (591)
T 2vgl_B 345 LASQANIAQVLA-ELK-EYATE---VDVDFVRKAVRAIGRCAIKVEQ-------SAERCVSTLLDLIQTKV--NYVVQEA 410 (591)
T ss_dssp TCCSSTHHHHHH-HHH-HHTTS---SCHHHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHHHTCC--HHHHHHH
T ss_pred HCChhhHHHHHH-HHH-HHHhc---CCHHHHHHHHHHHHHHHHhChh-------HHHHHHHHHHHHHcccc--hHHHHHH
Confidence 001112221 111 34443 3456666665555444333221 12556666777775332 1222333
Q ss_pred HHHHHHHhhhccCCcHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHH
Q 001368 358 VLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVR 437 (1091)
Q Consensus 358 v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svR 437 (1091)
+. .+++.+... .+ .+..++..+.+.++. ...+.....+ .-++-..|..... ...+.+.++.-+...+..||
T Consensus 411 i~-~l~~ii~~~-p~-~~~~~v~~L~~~l~~-~~~~~~~~~~----~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr 481 (591)
T 2vgl_B 411 IV-VIRDIFRKY-PN-KYESIIATLCENLDS-LDEPDARAAM----IWIVGEYAERIDN-ADELLESFLEGFHDESTQVQ 481 (591)
T ss_dssp HH-HHHHHHHHS-CS-SCCTTHHHHHHTTTT-CCSHHHHHHH----HHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHH
T ss_pred HH-HHHHHHHHC-cc-hHHHHHHHHHHHHHh-ccCHHHHHHH----HHHHHcccccccC-HHHHHHHHHHhhccCCHHHH
Confidence 33 234444221 11 122334444443322 1223322222 2333333433322 23455556655666788999
Q ss_pred HHHHHHHHHHHHhCCcchhhHHHHHHHHH
Q 001368 438 IEAALTLRALAEVDPTCVSGLITYGVTTL 466 (1091)
Q Consensus 438 i~AA~cLr~~~~a~P~~~~~ll~~~~~~L 466 (1091)
.++..++-.+....|....+++...++..
T Consensus 482 ~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~ 510 (591)
T 2vgl_B 482 LTLLTAIVKLFLKKPSETQELVQQVLSLA 510 (591)
T ss_dssp HHHHHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 99999999999999987666666666654
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.88 E-value=0.0017 Score=76.75 Aligned_cols=348 Identities=14% Similarity=0.050 Sum_probs=201.8
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcch---hH--HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHH---Hh
Q 001368 67 DALYSLLILGARRPVRHLASVAMGRIISKGDNIS---VY--SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQ---FG 138 (1091)
Q Consensus 67 ~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~---lf--dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~---~G 138 (1091)
+.|.+.+. ++.+.+|...+.+|..+.+..+... +. ..+..|..+|+. ++++..+..|+.+|+.+... .-
T Consensus 77 ~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 77 PAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR--EDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC--TTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC--CCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 45555554 3457789999999999987654111 11 346677888862 22366556899999987752 11
Q ss_pred hHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHH-HHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 001368 139 RRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAY-SEAFRLIMRFAIVDKSFVVRIAGARCLKAF 217 (1091)
Q Consensus 139 ~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~-~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l 217 (1091)
+.+.. ...+..+++++++.+..+|..++.+|.++...... ....+. ..+.....+....+.+..|+..|+.+|..|
T Consensus 154 ~~~~~--~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 154 KVVID--HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK-CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH-HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHh--CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 11111 14778899999998899999999999999752110 000000 012222233322568899999999999999
Q ss_pred HhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCCh-H-HHHHHHhhhh
Q 001368 218 AHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKL-E-GGLQRHLALP 295 (1091)
Q Consensus 218 ~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~-e-~~l~~~Ls~~ 295 (1091)
.... +.....-.......+.+.+.+.+..+|..++.+|+.+... +.. ....+ + +++. .|..
T Consensus 231 ~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~---~~~-----------~~~~~~~~g~v~-~Lv~- 293 (528)
T 4b8j_A 231 CRGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG---TND-----------KIQAVIEAGVCP-RLVE- 293 (528)
T ss_dssp HCSS-SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---CHH-----------HHHHHHHTTCHH-HHHH-
T ss_pred HcCC-CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---CHH-----------HHHHHHHcCHHH-HHHH-
Confidence 9874 3332223356778888999999999999999999987621 110 00000 0 1111 1111
Q ss_pred hcccCCCCcchhHHHHHHHHHHHHHHhcc---ccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCc
Q 001368 296 FTRANGAKSKNMRVNLTLSWVYFLQAIRL---KYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTE 372 (1091)
Q Consensus 296 f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~---~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE 372 (1091)
.++. ...++|.....+...+...-.. ..++ ...+..++.++..+. +...++.+-+.|..... +.
T Consensus 294 lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-----~~~l~~L~~lL~~~~--~~~v~~~A~~~L~nl~~---~~ 360 (528)
T 4b8j_A 294 LLLH---PSPSVLIPALRTVGNIVTGDDAQTQCIID-----HQALPCLLSLLTQNL--KKSIKKEACWTISNITA---GN 360 (528)
T ss_dssp HTTC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHT-----TTHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHT---SC
T ss_pred HHcC---CChhHHHHHHHHHHHHHcCCHHHHHHHHH-----hhhHHHHHHHHcCCC--cHHHHHHHHHHHHHHHC---CC
Confidence 1222 2356666555544444321100 0000 123445666665331 23344444444454442 23
Q ss_pred HHHH------HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCch--hh-HHHHHHHHHHHhcCCchHHHHHHHHH
Q 001368 373 PTQR------SFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPS--EF-KEVLDSTVVAAVSHSSQLVRIEAALT 443 (1091)
Q Consensus 373 ~~Q~------~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~--~~-~~~l~d~l~~ll~hps~svRi~AA~c 443 (1091)
..|. .++..|++.+... +..+...|+.+++.+... |+... .+ ..++.+.|+.+|.+++..+|..|.++
T Consensus 361 ~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~-~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~ 437 (528)
T 4b8j_A 361 KDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSG-GSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEG 437 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH-SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcC-CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 3332 2233344433333 444555788888888765 22111 11 23578899999999999999999999
Q ss_pred HHHHHHhCCc
Q 001368 444 LRALAEVDPT 453 (1091)
Q Consensus 444 Lr~~~~a~P~ 453 (1091)
|..++...+.
T Consensus 438 L~~l~~~~~~ 447 (528)
T 4b8j_A 438 LENILKVGET 447 (528)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876544
No 25
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.87 E-value=0.011 Score=72.21 Aligned_cols=277 Identities=16% Similarity=0.129 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC
Q 001368 145 LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC 224 (1091)
Q Consensus 145 ~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~ 224 (1091)
...+++.+.|-+++.+..+|..++++|+++- ++.+..++.. ..+.++.|++..||.+|+.|+..++... |
T Consensus 105 ~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~-~l~~~L~~~~~~VRk~A~~al~~l~~~~-p- 174 (618)
T 1w63_A 105 HLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAG-EVEKLLKTSNSYLRKKAALCAVHVIRKV-P- 174 (618)
T ss_dssp HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHH-HHHHHHHSCCHHHHHHHHHHHHHHHHHC-G-
T ss_pred HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHC-h-
Confidence 3457888889999888999999999999953 2456677777 3666789999999999999999999875 3
Q ss_pred cccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCC-hHHHHHHHhh----hhhccc
Q 001368 225 LGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKK-LEGGLQRHLA----LPFTRA 299 (1091)
Q Consensus 225 ~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~-~e~~l~~~Ls----~~f~r~ 299 (1091)
.-++.+.....+.+.+.|+.|+.++..+|+++.-. .|.. ...-++ .+..+ +.|. .++...
T Consensus 175 ---~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~--~~~~---------~~~~~~~v~~l~-~~L~~~~~~~~~~~ 239 (618)
T 1w63_A 175 ---ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER--SPDM---------LAHFRKLVPQLV-RILKNLIMSGYSPE 239 (618)
T ss_dssp ---GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS--HHHH---------HHHHHTTHHHHH-HHHHHHHHSCCCTT
T ss_pred ---HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh--ChHH---------HHHHHHHHHHHH-HHHHHHHcCCCCcc
Confidence 33456667778889999999999999999997511 0100 000001 11111 1222 122111
Q ss_pred C---CCCcchhHHHHHHHHHHHHHHhccccCCCCchh-hHHHHHHHHHhcc---CCCcc-HHHHHHHHHHHHHhhhccCC
Q 001368 300 N---GAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSEL-QDYALQVMDMLRA---DIFVD-SHALACVLYILRIGVTDQMT 371 (1091)
Q Consensus 300 ~---~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~-~~y~~~i~~ll~~---~~~~~-~~~r~~v~~ILr~~i~~~Lg 371 (1091)
. +..+.-.++- .+.+++.++.. +... ..+...+..++.. ..+.+ +....|+..|+.- -.
T Consensus 240 ~~~~~~~~~~~q~~----il~~L~~l~~~----~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l-----~~ 306 (618)
T 1w63_A 240 HDVSGISDPFLQVR----ILRLLRILGRN----DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI-----KS 306 (618)
T ss_dssp TCSSSSSCHHHHHH----HHHHHHHHTTT----CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS-----CC
T ss_pred ccccCCCCChHHHH----HHHHHHHhCCC----CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc-----CC
Confidence 0 0112333333 23444444431 1111 2233233333321 11211 2334777777541 12
Q ss_pred cHHH-HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 001368 372 EPTQ-RSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEV 450 (1091)
Q Consensus 372 E~~Q-~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a 450 (1091)
++.- ..+...+.+-+.+.+++ .--+||..++.+... .+.......+.++.++.+|..+||..|..+|..++.
T Consensus 307 ~~~l~~~a~~~L~~~L~~~d~~--vr~~aL~~L~~i~~~----~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~- 379 (618)
T 1w63_A 307 ESGLRVLAINILGRFLLNNDKN--IRYVALTSLLKTVQT----DHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVN- 379 (618)
T ss_dssp CHHHHHHHHHHHHHHHTCSSTT--THHHHHHHHHHHHHH----HHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHHhh----CHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-
Confidence 2222 23455555555555554 445677777777664 233444567789999999999999999999999874
Q ss_pred CCcchhhHHHHHHHHHH
Q 001368 451 DPTCVSGLITYGVTTLN 467 (1091)
Q Consensus 451 ~P~~~~~ll~~~~~~L~ 467 (1091)
+..+..++...++.+.
T Consensus 380 -~~nv~~iv~eL~~~l~ 395 (618)
T 1w63_A 380 -GNNIRGMMKELLYFLD 395 (618)
T ss_dssp -SSSTHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHH
Confidence 4446667766666654
No 26
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.87 E-value=0.00041 Score=71.83 Aligned_cols=150 Identities=28% Similarity=0.335 Sum_probs=106.7
Q ss_pred HHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcH
Q 001368 66 EDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGL 145 (1091)
Q Consensus 66 ~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~ 145 (1091)
.+.|.+.+. .+-+-+|....++|+.+- +. +.+..|...++ +.++..+..|+.+||.+ | .
T Consensus 21 ~~~L~~~L~-~~~~~vR~~A~~~L~~~~---~~----~~~~~L~~~l~---~~~~~vr~~a~~aL~~~----~------~ 79 (211)
T 3ltm_A 21 VEMYIKNLQ-DDSYYVRRAAAYALGKIG---DE----RAVEPLIKALK---DEDAWVRRAAADALGQI----G------D 79 (211)
T ss_dssp HHHHHHHTT-CSSHHHHHHHHHHHHHHC---CG----GGHHHHHHHTT---CSCHHHHHHHHHHHHHH----C------C
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHhC---Cc----cHHHHHHHHHc---CCCHHHHHHHHHHHHhh----C------C
Confidence 355555555 566777888888888763 32 35667777776 44676666788888864 2 1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc
Q 001368 146 LETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL 225 (1091)
Q Consensus 146 ~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~ 225 (1091)
++.+..+.+.++..+..+|..+..+|.++ |. +.....+.+ .+.|.+..||.+|+++|..+..
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~---~~~~~~L~~-----~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQI----GD---ERAVEPLIK-----ALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC---GGGHHHHHH-----HTTCSSHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc---HHHHHHHHH-----HHhCCCHHHHHHHHHHHHHcCC------
Confidence 45677788888888888999999988874 32 223333333 4788999999999988877632
Q ss_pred ccchhhhHHHHHHHhccCCChhHHHHHHHHHHHH
Q 001368 226 GVGELDNSATHCVKAIEDPIASVRDAFAEALGSL 259 (1091)
Q Consensus 226 ~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~l 259 (1091)
+.....+.+.+++++..||.+++++|+.+
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 22455667788899999999999999986
No 27
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00029 Score=76.30 Aligned_cols=189 Identities=9% Similarity=0.007 Sum_probs=140.4
Q ss_pred ChHhHHHHHHHHHH-HHHHHhhHH--hhcHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHhcCC-CCCch-hHHHHHHH
Q 001368 119 EPQKVAGAAQCLGE-LYRQFGRRI--TSGLLETTIIAAKLM-KFNEEFVRQEALLLLQNALEGSG-GSAAA-SAYSEAFR 192 (1091)
Q Consensus 119 sp~~~~aA~~cLG~-l~~~~G~~l--~s~~~e~~~~llK~l-K~~~a~~R~~~l~~L~kil~g~g-~~~~~-~~~~di~K 192 (1091)
....|.+|+..|+. +.+...+.. ..-+.+.+..+.|.+ |..+..+|..++++++.+.+|++ ... + ..+..+.-
T Consensus 29 ~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f-~~~y~~~llp 107 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF-SKDYVSLVFT 107 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc-cHHHHHHHHH
Confidence 34444589999998 776444554 456678899999999 77899999999999999999998 666 5 67888887
Q ss_pred HHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCC
Q 001368 193 LIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQP 272 (1091)
Q Consensus 193 ~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~ 272 (1091)
.++. .+.||...||.++..++.+++.+..|..-.+.+|.+..-++.++++.|..+|..+..+|+.++..+-...
T Consensus 108 ~ll~-~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~----- 181 (249)
T 2qk1_A 108 PLLD-RTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY----- 181 (249)
T ss_dssp HHHH-GGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCS-----
T ss_pred HHHH-HHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcc-----
Confidence 6444 4789999999999999999999764433223477888889999999999999999999999995432110
Q ss_pred CCCCCCCCCCCh-HHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcc
Q 001368 273 KGKGPFPPAKKL-EGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRL 324 (1091)
Q Consensus 273 ~~k~~~~~~k~~-e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~ 324 (1091)
..-.+.+ ++.+- .+...+. - +..++|.+-++++..+.+.+|.
T Consensus 182 -----~~l~~~l~~~iip-~l~~~l~-D---~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 182 -----STLQRYLKDEVVP-IVIQIVN-D---TQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp -----HHHHHHHTTTHHH-HHHHHHT-C---SSHHHHHHHHHHHHHHHHHHCS
T ss_pred -----hhHHHHHHHHHHH-HHHHHhc-C---CCHHHHHHHHHHHHHHHHHhCH
Confidence 0000011 22221 3332232 2 4689999999999999999997
No 28
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.79 E-value=0.0013 Score=67.39 Aligned_cols=150 Identities=25% Similarity=0.234 Sum_probs=108.8
Q ss_pred HHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcH
Q 001368 66 EDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGL 145 (1091)
Q Consensus 66 ~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~ 145 (1091)
.+.|.+.+. .+.+.+|....++|+.+ |+. +.+..+...|+ +.+|..+.+|+.+||.+ |+
T Consensus 47 ~~~L~~~l~-~~~~~vr~~a~~~L~~~---~~~----~~~~~L~~~l~---d~~~~vr~~a~~aL~~~----~~------ 105 (201)
T 3ltj_A 47 VEPLIKALK-DEDAWVRRAAADALGQI---GDE----RAVEPLIKALK---DEDGWVRQSAAVALGQI----GD------ 105 (201)
T ss_dssp HHHHHHHTT-CSSHHHHHHHHHHHHHH---CCG----GGHHHHHHHTT---CSSHHHHHHHHHHHHHH----CC------
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHhh---CCH----HHHHHHHHHHc---CCCHHHHHHHHHHHHHh----Cc------
Confidence 455666664 45677899888888876 443 35667777776 55777777888888864 22
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc
Q 001368 146 LETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL 225 (1091)
Q Consensus 146 ~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~ 225 (1091)
++.+..+.+.++..+..+|..+..+|.++ |. +.....+.+ .+.|.+..||.+|++.|..+..
T Consensus 106 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~---~~~~~~L~~-----~l~d~~~~vr~~A~~aL~~~~~------ 167 (201)
T 3ltj_A 106 ERAVEPLIKALKDEDWFVRIAAAFALGEI----GD---ERAVEPLIK-----ALKDEDGWVRQSAADALGEIGG------ 167 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----TC---GGGHHHHHH-----HTTCSSHHHHHHHHHHHHHHCS------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC---HHHHHHHHH-----HHcCCCHHHHHHHHHHHHHhCc------
Confidence 34667788888888889999999999885 31 233333333 4778889999999999877732
Q ss_pred ccchhhhHHHHHHHhccCCChhHHHHHHHHHHHH
Q 001368 226 GVGELDNSATHCVKAIEDPIASVRDAFAEALGSL 259 (1091)
Q Consensus 226 ~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~l 259 (1091)
+.....+.+.+++++..||.++.+.|+.+
T Consensus 168 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 168 -----ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp -----HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred -----hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 44667777788889999999999998874
No 29
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.75 E-value=0.0011 Score=67.93 Aligned_cols=151 Identities=27% Similarity=0.315 Sum_probs=112.3
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhc
Q 001368 65 CEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSG 144 (1091)
Q Consensus 65 l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~ 144 (1091)
..+.+.+.+ ..+-+.+|....++|+.+-. . +.+..+...++ +.++..+..|+.+||.+ |+
T Consensus 15 ~~~~~i~~L-~~~~~~vr~~A~~~L~~~~~---~----~~~~~L~~~l~---~~~~~vr~~a~~~L~~~----~~----- 74 (201)
T 3ltj_A 15 KVEMYIKNL-QDDSYYVRRAAAYALGKIGD---E----RAVEPLIKALK---DEDAWVRRAAADALGQI----GD----- 74 (201)
T ss_dssp HHHHHHHHT-TCSCHHHHHHHHHHHHHHCC---G----GGHHHHHHHTT---CSSHHHHHHHHHHHHHH----CC-----
T ss_pred chHHHHHHh-cCCCHHHHHHHHHHHHhcCC---h----hHHHHHHHHHc---CCCHHHHHHHHHHHHhh----CC-----
Confidence 345555555 34567789999999987643 2 35667888785 55677666888888854 22
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC
Q 001368 145 LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC 224 (1091)
Q Consensus 145 ~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~ 224 (1091)
++.+..+.+.++..+..+|..++.+|.++ |. +.....+.+ ++.|.+..||.+|+++|..+...
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~---~~~~~~L~~-----~l~d~~~~vr~~a~~aL~~~~~~---- 137 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQI----GD---ERAVEPLIK-----ALKDEDWFVRIAAAFALGEIGDE---- 137 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC---GGGHHHHHH-----HTTCSSHHHHHHHHHHHHHHTCG----
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc---HHHHHHHHH-----HHcCCCHHHHHHHHHHHHHhCCH----
Confidence 35678888999988899999999999884 42 333444444 47899999999999999877432
Q ss_pred cccchhhhHHHHHHHhccCCChhHHHHHHHHHHHH
Q 001368 225 LGVGELDNSATHCVKAIEDPIASVRDAFAEALGSL 259 (1091)
Q Consensus 225 ~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~l 259 (1091)
.......+.+++++..||.+++++|+.+
T Consensus 138 -------~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 138 -------RAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp -------GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 2455667888999999999999999997
No 30
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.74 E-value=0.0011 Score=68.49 Aligned_cols=152 Identities=24% Similarity=0.204 Sum_probs=113.4
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhc
Q 001368 65 CEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSG 144 (1091)
Q Consensus 65 l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~ 144 (1091)
..+.|.+.+. .+.+.+|....++|+.+- +. +.+..|...|+ +.+|..+.+|+.+||.+ |+
T Consensus 51 ~~~~L~~~l~-~~~~~vr~~a~~aL~~~~---~~----~~~~~L~~~l~---~~~~~vr~~a~~aL~~~----~~----- 110 (211)
T 3ltm_A 51 AVEPLIKALK-DEDAWVRRAAADALGQIG---DE----RAVEPLIKALK---DEDGWVRQSAAVALGQI----GD----- 110 (211)
T ss_dssp GHHHHHHHTT-CSCHHHHHHHHHHHHHHC---CG----GGHHHHHHHTT---CSSHHHHHHHHHHHHHH----CC-----
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHhhC---CH----HHHHHHHHHHc---CCCHHHHHHHHHHHHHh----Cc-----
Confidence 3456666666 456788999999998874 33 35567777775 56777777899999855 22
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC
Q 001368 145 LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC 224 (1091)
Q Consensus 145 ~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~ 224 (1091)
++.+..+.+.++..+..+|..+..+|.++ |. +.....+.+ .+.|.+..||.+|+++|..+..
T Consensus 111 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~---~~~~~~L~~-----~l~d~~~~vr~~a~~aL~~~~~----- 172 (211)
T 3ltm_A 111 -ERAVEPLIKALKDEDWFVRIAAAFALGEI----GD---ERAVEPLIK-----ALKDEDGWVRQSAADALGEIGG----- 172 (211)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC---GGGHHHHHH-----HTTCSSHHHHHHHHHHHHHHCS-----
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC---HHHHHHHHH-----HHcCCCHHHHHHHHHHHHHhCc-----
Confidence 45677888999888899999999999985 32 223333333 4789999999999999987742
Q ss_pred cccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 225 LGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 225 ~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
+.....+.+.+++++..||.++.++|+.+-
T Consensus 173 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 173 ------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp ------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred ------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 446777788889999999999999998764
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.67 E-value=0.0021 Score=67.34 Aligned_cols=219 Identities=18% Similarity=0.147 Sum_probs=140.4
Q ss_pred chHHHHHHHHHHHhhccCChhhHHH-HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCc-chhH---HhHHHHHH
Q 001368 36 PLLCFDLLSDLISAIDEEPKESILL-WQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDN-ISVY---SRVSSLQG 110 (1091)
Q Consensus 36 ~~~~f~~L~~L~~~l~~~~k~di~~-~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~-~~lf---dtvn~l~~ 110 (1091)
+....+-+..|.......+ +..+. .+....+.|.+++..+ .+.+|...+.||..+-...+. ...+ ..+..+..
T Consensus 16 ~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ 93 (252)
T 4hxt_A 16 SETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 93 (252)
T ss_dssp HHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH
Confidence 5555555555555543332 12111 2234677788877764 477899999999999775222 2211 34667777
Q ss_pred hhhcCCCCChHhHHHHHHHHHHHHH---HHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 001368 111 FLSDGKKSEPQKVAGAAQCLGELYR---QFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAY 187 (1091)
Q Consensus 111 iL~~~K~~sp~~~~aA~~cLG~l~~---~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~ 187 (1091)
+++ +.++..+..|+.+|+.+-. ..-+.+.. ...+..+++.++..+..+|..++.+|..+..+.......-..
T Consensus 94 ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 168 (252)
T 4hxt_A 94 LLT---STDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 168 (252)
T ss_dssp HTT---CSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 776 4456655578899998773 22222221 246788899999988999999999999987642211111112
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchh--hhHHHHHHHhccCCChhHHHHHHHHHHHHHHhcc
Q 001368 188 SEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGEL--DNSATHCVKAIEDPIASVRDAFAEALGSLLALGM 264 (1091)
Q Consensus 188 ~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dl--E~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~ 264 (1091)
.++... .-..+.+.+..||..|+.+|..+.... +-. ...+ ........+.+++++..+|..++.+|+.+.....
T Consensus 169 ~~~i~~-L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 169 AGGVEV-LVKLLTSTDSEVQKEAARALANIASGP-TSA-IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp TTHHHH-HHHHTTCSCHHHHHHHHHHHHHHTTSB-HHH-HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred CcCHHH-HHHHHCCCCHHHHHHHHHHHHHHHcCC-HHH-HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 234442 334477888999999999999998643 100 0011 1356678888999999999999999999985443
No 32
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.59 E-value=0.0014 Score=80.14 Aligned_cols=238 Identities=13% Similarity=0.031 Sum_probs=154.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCcchHHHHHH------------------Hhhccc--ccCCcchhHHHHHHHHHHHhhcCC
Q 001368 819 LGSEVLNSIQAIFLSILAEGDICASQRRAL------------------LLGDLT--VVTDANYAGSIALAIGCIHRSAGG 878 (1091)
Q Consensus 819 l~~~v~~~~~~li~~~l~~~d~~~~~r~aa------------------~l~~lv--~~~dp~~Ra~~aLALG~I~r~vGg 878 (1091)
.++++.-++...+++-+.++|++ .|..| .+.+.. ...+|+.|-..++|+..+|+....
T Consensus 104 ~~~e~~~L~iN~l~kDl~~~n~~--ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~ 181 (621)
T 2vgl_A 104 SNSELIRLINNAIKNDLASRNPT--FMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD 181 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCHH--HHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCcHHHHHHHHHHHHhcCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh
Confidence 35677777777777777777764 55555 222234 678999999999999999998765
Q ss_pred cccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHhccC-----CCCCchh--HHHH
Q 001368 879 MALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSE-----ENGWVDL--QQGV 951 (1091)
Q Consensus 879 mas~~~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~-----~~~~~~~--~~~i 951 (1091)
..-. ...+..|..+.+|++|.|..-++.++.-+....+..|.++++.....+.+++... +|.+..+ .-..
T Consensus 182 ~~~~---~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~q 258 (621)
T 2vgl_A 182 LVPM---GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLS 258 (621)
T ss_dssp GCCC---CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHH
T ss_pred hcCc---hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHH
Confidence 4311 2677888889999999999999999998888766668888887777777776542 1211111 2234
Q ss_pred HHHHHHHHHhhCCC-CCCchh----hhHhhhccc---c--------CC--CchhHHHHHhHHhhhcccCccchhhHHHHH
Q 001368 952 GRLINAIVAVLGPE-LAPGSI----FFSRCKVSA---W--------QC--SSPKWSVRFTQQLVLFAPQAVSVHSHVQTL 1013 (1091)
Q Consensus 952 gr~l~alI~~LGPe-Lq~~s~----~~~~~~~~~---~--------~~--~~~~eai~clQqL~lFAP~~v~~~~lV~~L 1013 (1091)
.++++. ++.++|. =.+... ++..++... . +. .+--|+++++-++. |..--....+..|
T Consensus 259 i~il~l-l~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L 334 (621)
T 2vgl_A 259 VKLLRL-LQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQL 334 (621)
T ss_dssp HHHHHH-GGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred HHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHH
Confidence 455544 4456763 111111 111221100 0 00 12268888887764 3222233457888
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHccCch-hhhhhchHHHHHHhhccCCCHHHHH
Q 001368 1014 LSTLSSRQPILRHLAVSTLRHLIEKDPD-SVIEERIEGNLFHMLDEETDSEYVK 1066 (1091)
Q Consensus 1014 ~~~L~S~~~~Lr~aAv~cLrqL~qr~a~-~v~~~~le~~Lf~~LD~e~d~~l~~ 1066 (1091)
...|.++++.+|-+|+.+|.+++++++. ... ......++..|+.++|..+++
T Consensus 335 ~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~~~~~~i~~~L~~d~d~~Ir~ 387 (621)
T 2vgl_A 335 GQFLQHRETNLRYLALESMCTLASSEFSHEAV-KTHIETVINALKTERDVSVRQ 387 (621)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-HTTHHHHHHHHTTCCCHHHHH
T ss_pred HHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHhccCCCHhHHH
Confidence 8999999999999999999999999862 222 234556677776566766654
No 33
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.59 E-value=0.0026 Score=68.75 Aligned_cols=166 Identities=10% Similarity=-0.043 Sum_probs=114.6
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhc
Q 001368 65 CEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSG 144 (1091)
Q Consensus 65 l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~ 144 (1091)
..+.|.+.+. .+.+.+|...+.+|+.+....+ .+-..+..+.+.+. ++.++..+.+|+.+||.+....+ ..
T Consensus 55 ~~~~L~~~l~-d~~~~vR~~A~~aL~~l~~~~~--~~~~l~~~L~~~~~--~d~~~~vr~~a~~aL~~l~~~~~----~~ 125 (280)
T 1oyz_A 55 AVRLAIEFCS-DKNYIRRDIGAFILGQIKICKK--CEDNVFNILNNMAL--NDKSACVRATAIESTAQRCKKNP----IY 125 (280)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHSCCCTT--THHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHCG----GG
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHhccccc--cchHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhccCC----cc
Confidence 4455666554 4667889999999998753222 22222333332211 25567777789999997654322 23
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC
Q 001368 145 LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC 224 (1091)
Q Consensus 145 ~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~ 224 (1091)
.+..+..+.+.++..+..+|..+..+|.+ +|. +.....+.+ .+.|.+..||..|+..|..+...+
T Consensus 126 ~~~~~~~L~~~l~d~~~~vR~~a~~aL~~----~~~---~~~~~~L~~-----~l~d~~~~vr~~a~~aL~~~~~~~--- 190 (280)
T 1oyz_A 126 SPKIVEQSQITAFDKSTNVRRATAFAISV----IND---KATIPLLIN-----LLKDPNGDVRNWAAFAININKYDN--- 190 (280)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHT----C------CCHHHHHH-----HHTCSSHHHHHHHHHHHHHHTCCC---
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHHHh----cCC---HHHHHHHHH-----HHcCCCHHHHHHHHHHHHhhccCc---
Confidence 46778888999998899999999999886 442 223333333 377999999999999997774322
Q ss_pred cccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 225 LGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 225 ~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
+.......+.+++++..||..++..||.+-
T Consensus 191 ------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 191 ------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 456778889999999999999999999853
No 34
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.54 E-value=0.0012 Score=69.74 Aligned_cols=230 Identities=17% Similarity=0.094 Sum_probs=145.8
Q ss_pred cchhHHHHHHHHHhhhccCCCCchHHHHHHHHHHHhhccCChhhHHH-HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 001368 14 RFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILL-WQRKCEDALYSLLILGARRPVRHLASVAMGRI 92 (1091)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~-~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l 92 (1091)
+|+-++..|. +.++....+-+..|.+.+.. +.+.++. .+....+.|.+++.... +.+|...+.+|..+
T Consensus 13 ~~~~~~~~L~---------s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l 81 (252)
T 4db8_A 13 ELPQMTQQLN---------SDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNI 81 (252)
T ss_dssp SHHHHHHHHH---------SSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHc---------CCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence 6777777775 33444555555555555544 2222222 22346677888887655 77899999999998
Q ss_pred hhcCC--cchhHH--hHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhH-HhhcHHHHHHHHHHHhccCcHHHHHHH
Q 001368 93 ISKGD--NISVYS--RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR-ITSGLLETTIIAAKLMKFNEEFVRQEA 167 (1091)
Q Consensus 93 ~~~GD--~~~lfd--tvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~-l~s~~~e~~~~llK~lK~~~a~~R~~~ 167 (1091)
-...+ +..+.+ .+..+..+|+ ++++..+..|+.+|+.+-...... -.-.-...+..+++.++..+..+|..+
T Consensus 82 ~~~~~~~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 158 (252)
T 4db8_A 82 ASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHGGG---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred hcCCHHHHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 76322 222222 5677888886 345665557899999885533322 111122467889999998889999999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccch-hh-hHHHHHHHhccCCC
Q 001368 168 LLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGE-LD-NSATHCVKAIEDPI 245 (1091)
Q Consensus 168 l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~d-lE-~l~tl~~K~le~s~ 245 (1091)
+.+|..+..+.......-...++... .-..+.+.+..||..|+.+|..+.... +-. ... .+ .......+.+.+.+
T Consensus 159 ~~~L~~l~~~~~~~~~~~~~~~~i~~-L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~-~~~~~~~g~i~~L~~ll~~~~ 235 (252)
T 4db8_A 159 LWALSNIASGGNEQIQAVIDAGALPA-LVQLLSSPNEQILQEALWALSNIASGG-NEQ-KQAVKEAGALEKLEQLQSHEN 235 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHH-HHHGGGCSSHHHHHHHHHHHHHHTTSC-HHH-HHHHHHTTHHHHHHTTTTCSS
T ss_pred HHHHHHHHcCChHHHHHHHHCCCHHH-HHHHHCCCCHHHHHHHHHHHHHHhcCC-HHH-HHHHHHCCcHHHHHHHhCCCC
Confidence 99999987643110000011223332 233467789999999999999998542 100 000 11 35667788889999
Q ss_pred hhHHHHHHHHHHHHH
Q 001368 246 ASVRDAFAEALGSLL 260 (1091)
Q Consensus 246 ~~vR~a~A~~Lg~lL 260 (1091)
..+|..++.+|+.+.
T Consensus 236 ~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 236 EKIQKEAQEALEKLQ 250 (252)
T ss_dssp SHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998753
No 35
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.46 E-value=0.21 Score=63.80 Aligned_cols=382 Identities=10% Similarity=0.049 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcC---CcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHH
Q 001368 61 WQRKCEDALYSLLILGARRPVRHLASVAMGRIISKG---DNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQF 137 (1091)
Q Consensus 61 ~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~G---D~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~ 137 (1091)
.+..+++.|.+.+...+ +.+|+-++.|++.|.... +=-.+++ .+...++ ..++....+|+.||+++++.+
T Consensus 82 ~k~~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p~~Wp~ll~---~L~~~l~---s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 82 NVELIKKEIVPLMISLP-NNLQVQIGEAISSIADSDFPDRWPTLLS---DLASRLS---NDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp HHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHSTTTCTTHHH---HHHTTCC---SSCTTHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCccchhHHHH---HHHHHhC---CCCHHHHHHHHHHHHHHHHHH
Confidence 34567778888877766 888999999999999862 2223333 5555554 224555568999999999865
Q ss_pred hh-------------HHhhcHHHHHHHH---HHHhccC---cHHHH--HHHHHHHHHHHhcCCCC-CchhH---HHH---
Q 001368 138 GR-------------RITSGLLETTIIA---AKLMKFN---EEFVR--QEALLLLQNALEGSGGS-AAASA---YSE--- 189 (1091)
Q Consensus 138 G~-------------~l~s~~~e~~~~l---lK~lK~~---~a~~R--~~~l~~L~kil~g~g~~-~~~~~---~~d--- 189 (1091)
-. -+...++.....+ ...++.+ ++..| .+++.+.-|++..+... ..+.. ...
T Consensus 155 ~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~ 234 (960)
T 1wa5_C 155 RPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMG 234 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHH
T ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 31 1223333222322 2224432 22344 33444444554433211 11211 111
Q ss_pred HHHHHHHHh----ccC---cc----hHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhcc-----CCChhHHHHHH
Q 001368 190 AFRLIMRFA----IVD---KS----FVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIE-----DPIASVRDAFA 253 (1091)
Q Consensus 190 i~K~~~r~~----~~D---ks----~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le-----~s~~~vR~a~A 253 (1091)
++..+.... -+| +. ..||..+++|+..+....+..+ ..-++.+...+++.+. ..+..++..+-
T Consensus 235 ~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al 313 (960)
T 1wa5_C 235 IFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVF-GPMINEFIQITWNLLTSISNQPKYDILVSKSL 313 (960)
T ss_dssp HHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHH
T ss_pred HHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHH
Confidence 111122110 011 11 2578889999988876532222 1224567778888775 34566777777
Q ss_pred HHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhc------------------ccC--CCCcchhHHHHHH
Q 001368 254 EALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFT------------------RAN--GAKSKNMRVNLTL 313 (1091)
Q Consensus 254 ~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~------------------r~~--~~~~r~~R~Gv~~ 313 (1091)
+.+..+.-.....+ --|. ...+++.+. .+..+++ +-. +......|.....
T Consensus 314 ~fl~~~~~~~~~~~-----~~~~----~~~l~~li~-~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~ 383 (960)
T 1wa5_C 314 SFLTAVTRIPKYFE-----IFNN----ESAMNNITE-QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTD 383 (960)
T ss_dssp HHHHHHHTSHHHHG-----GGCS----HHHHHHHHH-HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHH
T ss_pred HHHHHHhCcHhHHH-----HHcC----chHHHHHHH-HHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHH
Confidence 77766541100000 0000 001122111 1111111 100 1123356766666
Q ss_pred HHHHHHHHhccccCCCCchhhHHHHHHHHHhc---cCCCccHHHHHHHHHHHHHhhhccC----CcHH-----HH-HHH-
Q 001368 314 SWVYFLQAIRLKYFHPDSELQDYALQVMDMLR---ADIFVDSHALACVLYILRIGVTDQM----TEPT-----QR-SFL- 379 (1091)
Q Consensus 314 ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~---~~~~~~~~~r~~v~~ILr~~i~~~L----gE~~-----Q~-~~~- 379 (1091)
+...+....|..- +..++..+.+.+. .+++.+-..|...-+.+...-.... |-.. +. .++
T Consensus 384 ~L~~l~~~~~~~v------~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~ 457 (960)
T 1wa5_C 384 FLKELKEKNEVLV------TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT 457 (960)
T ss_dssp HHHHHHHHCHHHH------HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH
T ss_pred HHHHHHHHcchhH------HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH
Confidence 6666666665321 2333434444444 1222233345566666555532111 1111 21 222
Q ss_pred HHHHhhcccCCC-ChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh--------
Q 001368 380 VFLGKQLQAVDA-SPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEV-------- 450 (1091)
Q Consensus 380 ~~l~~~~~~~~~-s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a-------- 450 (1091)
..+...+..+++ ++..-..|+..++..-..+ .++....+...+++.+.+++.-||.+|+++|..|+..
T Consensus 458 ~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~ 534 (960)
T 1wa5_C 458 KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPA 534 (960)
T ss_dssp HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCC
T ss_pred HHhHHHhcCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccc
Confidence 223333333322 5555557787777766665 3456777888899999999999999999999999974
Q ss_pred ---CCcchhhHHHHHHHHHHhh
Q 001368 451 ---DPTCVSGLITYGVTTLNAL 469 (1091)
Q Consensus 451 ---~P~~~~~ll~~~~~~L~~~ 469 (1091)
.+..+.|.++..++.|-..
T Consensus 535 ~~~~~~~l~p~l~~ll~~L~~l 556 (960)
T 1wa5_C 535 FIFHKEDISNSTEILLKNLIAL 556 (960)
T ss_dssp BSSCGGGTTTTHHHHHHHHHHH
T ss_pred ccccHHHhhhhHHHHHHHHHHH
Confidence 2344666666665555444
No 36
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.43 E-value=0.0019 Score=69.73 Aligned_cols=150 Identities=17% Similarity=0.048 Sum_probs=107.0
Q ss_pred hhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHH
Q 001368 73 LILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIA 152 (1091)
Q Consensus 73 l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~l 152 (1091)
+...+-+-+|..++++|+.+-.. ++..--+.+..|...++ +.++..+.+|+.+||.+- + ++.+..+
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~-~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~----~------~~~~~~L 164 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKK-NPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVIN----D------KATIPLL 164 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC-------------CCHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhcc-CCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcC----C------HHHHHHH
Confidence 34566777899999999998642 22222245667777675 667877778999998542 2 3467788
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhh
Q 001368 153 AKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDN 232 (1091)
Q Consensus 153 lK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~ 232 (1091)
.+.++..+..+|..+..+|.++ |.. ++.+...+.+ .+.|.+..||..|++.|..+.. +.
T Consensus 165 ~~~l~d~~~~vr~~a~~aL~~~----~~~-~~~~~~~L~~-----~l~d~~~~vR~~A~~aL~~~~~-----------~~ 223 (280)
T 1oyz_A 165 INLLKDPNGDVRNWAAFAININ----KYD-NSDIRDCFVE-----MLQDKNEEVRIEAIIGLSYRKD-----------KR 223 (280)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHH----TCC-CHHHHHHHHH-----HTTCSCHHHHHHHHHHHHHTTC-----------GG
T ss_pred HHHHcCCCHHHHHHHHHHHHhh----ccC-cHHHHHHHHH-----HhcCCCHHHHHHHHHHHHHhCC-----------Hh
Confidence 8999988899999999999885 322 2333433333 4789999999999999876642 33
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHH
Q 001368 233 SATHCVKAIEDPIASVRDAFAEALGSL 259 (1091)
Q Consensus 233 l~tl~~K~le~s~~~vR~a~A~~Lg~l 259 (1091)
....+.+.+++++ ||..++++||.+
T Consensus 224 ~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 224 VLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp GHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred hHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 5666777787755 999999999986
No 37
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.32 E-value=0.064 Score=63.56 Aligned_cols=391 Identities=12% Similarity=0.040 Sum_probs=215.0
Q ss_pred HHHHHhhhccCCCCchHHHHHHHHHHHhhccCChhhHHHH-HHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcC--Cc
Q 001368 22 LESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLW-QRKCEDALYSLLILGARRPVRHLASVAMGRIISKG--DN 98 (1091)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~~-Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~G--D~ 98 (1091)
+|.||... ++.|+..-++-++.+.|.|......-|.+. +.-....|.++|.....|.++...+.||..|=+.- .+
T Consensus 59 i~~~v~~l--~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 59 VEDIVKGI--NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp HHHHHHHH--TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 56677665 456677778888888887754433223222 22356777777777666778888999998885421 12
Q ss_pred chhHH--hHHHHHHhhhcCCCCChHhHHHHHHHHHHHHH---HHhhHHhhcHHHHHHHHHHHhccC-----cHHHHHHHH
Q 001368 99 ISVYS--RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYR---QFGRRITSGLLETTIIAAKLMKFN-----EEFVRQEAL 168 (1091)
Q Consensus 99 ~~lfd--tvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~---~~G~~l~s~~~e~~~~llK~lK~~-----~a~~R~~~l 168 (1091)
..+.+ .|..|..+|+ ..++..+..|+.+||.+-. ..-+.+.. ...+..++++++.. .......+.
T Consensus 137 ~~vv~~GaIp~Lv~lL~---s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~--~G~i~~Ll~lL~~~~~~~~~~~~~~~a~ 211 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLA---SPHAHISEQAVWALGNIAGDGSAFRDLVIK--HGAIDPLLALLAVPDLSTLACGYLRNLT 211 (510)
T ss_dssp HHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--cCChHHHHHHHHhccchhhhHHHHHHHH
Confidence 23333 4667777775 3345544468888887742 22222211 12345577777752 234556778
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHHHHHHHhccCCChh
Q 001368 169 LLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIAS 247 (1091)
Q Consensus 169 ~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~tl~~K~le~s~~~ 247 (1091)
.++..+.++-.....-...+.+... .-..+.+.+..|+..|+.||..|.... ... ..---..+...+++.+.+++..
T Consensus 212 ~~L~nl~~~~~~~~~~~~~~~~lp~-L~~LL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~ 289 (510)
T 3ul1_B 212 WTLSNLCRNKNPAPPLDAVEQILPT-LVRLLHHNDPEVLADSCWAISYLTDGP-NERIEMVVKKGVVPQLVKLLGATELP 289 (510)
T ss_dssp HHHHHHHCCCSSCCCHHHHHHHHHH-HHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHTTTCHHHHHHHHTCSCHH
T ss_pred HHHHHHhhcccchhHHHHHHhHHHH-HHHHHhcCCHHHHHHHHHHHHHHhhch-hhhHHHHHhcccchhhhhhhcCCChh
Confidence 8888888876554444445666664 444577888999999999999887653 100 0000012455677889999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChH-HHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcccc
Q 001368 248 VRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLE-GGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKY 326 (1091)
Q Consensus 248 vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e-~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~ 326 (1091)
++..++++|+.+....-..... -.+ +++ ..|.. +++. ...++|.-.+.+...+...-.. .
T Consensus 290 v~~~al~aL~nl~~~~~~~~~~-------------i~~~g~l-~~L~~-LL~~---~~~~v~~~A~~aL~nl~a~~~~-~ 350 (510)
T 3ul1_B 290 IVTPALRAIGNIVTGTDEQTQK-------------VIDAGAL-AVFPS-LLTN---PKTNIQKEATWTMSNITAGRQD-Q 350 (510)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHH-------------HHHTTGG-GGCC--CTTC---SSHHHHHHHHHHHHHHTTSCHH-H
T ss_pred hhhHHHHHHHHhhcCCHHHHHH-------------Hhhccch-HHHHH-HhcC---CCHHHHHHHHHHHHHHHcCcHH-H
Confidence 9999999999986321100000 000 000 01111 1122 3355555444444333211000 0
Q ss_pred CCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCcHHHH------HHHHHHHhhcccCCCChhHHHHHH
Q 001368 327 FHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQR------SFLVFLGKQLQAVDASPFMKIAAL 400 (1091)
Q Consensus 327 le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q~------~~~~~l~~~~~~~~~s~~~lv~aL 400 (1091)
... -.....+..+++++... +...++.+.+.|...... +...|+ .++..|++.+... ++.....+|
T Consensus 351 ~~~-v~~~g~i~~Lv~lL~~~---~~~v~~~Aa~aL~Nl~~~--~~~~~~~~L~~~g~i~~L~~LL~~~--d~~i~~~~L 422 (510)
T 3ul1_B 351 IQQ-VVNHGLVPFLVGVLSKA---DFKTQKEAAWAITNYTSG--GTVEQIVYLVHCGIIEPLMNLLSAK--DTKIIQVIL 422 (510)
T ss_dssp HHH-HHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHH--CCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHH
T ss_pred HHH-HHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHcc--CCHHHHHHHHHCCCHHHHHHHhcCC--CHHHHHHHH
Confidence 000 00012333445555422 233343333444443311 122232 2334455544443 344667899
Q ss_pred HHHHHHHHH---hCCCch--h-h-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001368 401 RTLSYTLKT---LGEVPS--E-F-KEVLDSTVVAAVSHSSQLVRIEAALTLRALA 448 (1091)
Q Consensus 401 ~el~~Ll~~---LGsa~~--~-~-~~~l~d~l~~ll~hps~svRi~AA~cLr~~~ 448 (1091)
+.+..+++. +|.... . + ..+..|.+-.+..|++..|+-.|..-+..|-
T Consensus 423 ~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 423 DAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 999998864 333211 1 1 1135678889999999999998888876664
No 38
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.32 E-value=0.11 Score=60.77 Aligned_cols=364 Identities=12% Similarity=0.008 Sum_probs=186.0
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcch-hH--HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhh-
Q 001368 64 KCEDALYSLLILGARRPVRHLASVAMGRIISKGDNIS-VY--SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGR- 139 (1091)
Q Consensus 64 ~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~-lf--dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~- 139 (1091)
...+.|.+++..++.+.+|+..+++|..+-..-+... ++ ..+..+..+++ +.++..+..|+.+|+.+-.....
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG---SPVDSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCCcch
Confidence 4677888888877788899999999999754322221 22 24667777775 33466555788899988664222
Q ss_pred -HHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCC----CchhHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 001368 140 -RITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGS----AAASAYSEAFRLIMRFAIVDKSFVVRIAGARCL 214 (1091)
Q Consensus 140 -~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~----~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL 214 (1091)
.... -...+..+++.+++.+..+|..+..+|..+..+-... .+......+.+ .+++ +....++.++++++
T Consensus 136 ~~~i~-~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~-ll~~---~~~~~~~~~a~~~L 210 (529)
T 1jdh_A 136 KMAVR-LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN-IMRT---YTYEKLLWTTSRVL 210 (529)
T ss_dssp HHHHH-HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH-HHHH---CCCHHHHHHHHHHH
T ss_pred HHHHH-HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH-HHHh---CChHHHHHHHHHHH
Confidence 1111 2346788999999888889999888888766521000 00112223333 2332 23456777888898
Q ss_pred HHHHhhcCCCcccchh--hhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHh
Q 001368 215 KAFAHIGGPCLGVGEL--DNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHL 292 (1091)
Q Consensus 215 ~~l~~~~~~~~~~~dl--E~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~L 292 (1091)
..+.... -. ...+ +.......+.+.+++..+|..++.+|+.+.... +. ....++.+. .|
T Consensus 211 ~~l~~~~--~~-~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~-------------~~~~~~~i~-~L 271 (529)
T 1jdh_A 211 KVLSVCS--SN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA--TK-------------QEGMEGLLG-TL 271 (529)
T ss_dssp HHHTTST--TH-HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC--TT-------------CSCCHHHHH-HH
T ss_pred HHHhcCc--cc-HHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCC--hh-------------hHHHHhHHH-HH
Confidence 8887542 11 0111 135566778888899999999999999876221 10 011234442 33
Q ss_pred hhhhcccCCCCcchhHHHHHHHHHHHHHHh---ccccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhcc
Q 001368 293 ALPFTRANGAKSKNMRVNLTLSWVYFLQAI---RLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQ 369 (1091)
Q Consensus 293 s~~f~r~~~~~~r~~R~Gv~~ayv~fl~~l---g~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~ 369 (1091)
... ++. ...++|.....+...+...- -....+ ...+..+++++..+.. +...+...-..|+......
T Consensus 272 ~~l-l~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-----~~~v~~L~~ll~~~~~-~~~v~~~a~~~L~nl~~~~ 341 (529)
T 1jdh_A 272 VQL-LGS---DDINVVTCAAGILSNLTCNNYKNKMMVCQ-----VGGIEALVRTVLRAGD-REDITEPAICALRHLTSRH 341 (529)
T ss_dssp HHH-TTC---SCHHHHHHHHHHHHHHTTTCHHHHHHHHH-----TTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTSSS
T ss_pred HHH-HcC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHH-----cCChHHHHHHHHccCC-HHHHHHHHHHHHHHHHcCC
Confidence 322 222 34667765555444442210 000000 1123345555543221 1222222223334433211
Q ss_pred -CCcHHHHH-----HHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchh---h-HHHHHHHHHHHhcCCchHHHHH
Q 001368 370 -MTEPTQRS-----FLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSE---F-KEVLDSTVVAAVSHSSQLVRIE 439 (1091)
Q Consensus 370 -LgE~~Q~~-----~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~---~-~~~l~d~l~~ll~hps~svRi~ 439 (1091)
-.|..|.. .+..+.+.+...+ ++.....++..++.+. ..+.. + ..++...|+.++.++++.+|.+
T Consensus 342 ~~~~~~~~~i~~~~~i~~L~~lL~~~~-~~~v~~~a~~~l~nl~----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 416 (529)
T 1jdh_A 342 QEAEMAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLA----LCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 416 (529)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHTTSTTC-CHHHHHHHHHHHHHHT----TSGGGHHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHHHcCChhHHHHHhcccc-chHHHHHHHHHHHHHh----cChhhhHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 11223322 2334444443222 2233445555555554 22221 2 2357789999999999999999
Q ss_pred HHHHHHHHHHhCCcchhhHHHHHHHHHHhh
Q 001368 440 AALTLRALAEVDPTCVSGLITYGVTTLNAL 469 (1091)
Q Consensus 440 AA~cLr~~~~a~P~~~~~ll~~~~~~L~~~ 469 (1091)
|+|++...+........++...++..|..+
T Consensus 417 a~~~l~n~~~~~~~~~~~i~~~~~~al~~L 446 (529)
T 1jdh_A 417 TSMGGTQQQFVEGVRMEEIVEGCTGALHIL 446 (529)
T ss_dssp ---------CBTTBCHHHHHHHHHHHHHHH
T ss_pred HhcccCchhhhccccHHHHHHHHHHHHHHH
Confidence 999988733222223344444444444443
No 39
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.25 E-value=0.31 Score=62.83 Aligned_cols=148 Identities=11% Similarity=0.062 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhhcCC--------CchhhHHHHHHHHHHhhcC---CcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHH
Q 001368 62 QRKCEDALYSLLILGA--------RRPVRHLASVAMGRIISKG---DNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCL 130 (1091)
Q Consensus 62 Q~~l~~~L~~~l~~~~--------g~P~R~l~a~cla~l~~~G---D~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cL 130 (1091)
+..+++.|.+.+...+ .+.+|+-++.|++.|...+ +=..+++ .+...++ .++....+++.+|
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~---~L~~~~~----~~~~~~~~~l~~L 161 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIP---ELIGSSS----SSVNVCENNMIVL 161 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHH---HHHHHHT----TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHH---HHHHHHc----cChHHHHHHHHHH
Confidence 3456677777766543 2456999999999999883 2223333 4444443 2343333678888
Q ss_pred HHHHHHHh----------------hHHhhcHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 001368 131 GELYRQFG----------------RRITSGLLETTIIAAKLMKFN-EEFVRQEALLLLQNALEGSGGSAAASAYSEAFRL 193 (1091)
Q Consensus 131 G~l~~~~G----------------~~l~s~~~e~~~~llK~lK~~-~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~ 193 (1091)
+.+.+..+ +.+...++.++..+.+.+.++ ...+|..+++++.+.+.-..... ..-.++...
T Consensus 162 ~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~--~~~~~ll~~ 239 (1049)
T 3m1i_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRY--IYETNILEL 239 (1049)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH--HHSSSHHHH
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH--HhhhhHHHH
Confidence 88887666 234455677777777777654 46788899999988766443111 011123332
Q ss_pred HHHHhccCcchHHHHHHHHHHHHHHhh
Q 001368 194 IMRFAIVDKSFVVRIAGARCLKAFAHI 220 (1091)
Q Consensus 194 ~~r~~~~Dks~~Vr~aAa~cL~~l~~~ 220 (1091)
..+..++ ...+|.+|++|+.+++..
T Consensus 240 l~~~~l~--~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 240 LSTKFMT--SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHTHHHH--SHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCC--CHhHHHHHHHHHHHHHhC
Confidence 2212222 567899999999998876
No 40
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.23 E-value=0.051 Score=68.03 Aligned_cols=348 Identities=14% Similarity=0.089 Sum_probs=189.4
Q ss_pred HHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcc-hhH---HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHH-
Q 001368 63 RKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNI-SVY---SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQF- 137 (1091)
Q Consensus 63 ~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~-~lf---dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~- 137 (1091)
......|.+++. ..-+.+|...+.||..|....+.. .+. +.+..|..+|+.+ .++..+..|+.+|..+-..-
T Consensus 149 ~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL~~Ls~~~~ 225 (780)
T 2z6g_A 149 TRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTLHNLSHHRE 225 (780)
T ss_dssp HHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHTSHH
T ss_pred hCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHHHHHhCCch
Confidence 345677777776 456778999999999998754322 222 3566777777633 25554447888888764321
Q ss_pred hh-HHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhH-HHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 001368 138 GR-RITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASA-YSEAFRLIMRFAIVDKSFVVRIAGARCLK 215 (1091)
Q Consensus 138 G~-~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~-~~di~K~~~r~~~~Dks~~Vr~aAa~cL~ 215 (1091)
++ .++. ...+..+++++++.+..+|..++.+|.++..+-.... ..+ ...+... .-..+.+.+..|+..|++||.
T Consensus 226 ~~~~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~v~~~g~v~~-Lv~lL~~~~~~v~~~a~~aL~ 301 (780)
T 2z6g_A 226 GLLAIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK-MAVRLAGGLQK-MVALLNKTNVKFLAITTDCLQ 301 (780)
T ss_dssp HHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH-HHHHHTTHHHH-HHHGGGCCCHHHHHHHHHHHH
T ss_pred hHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH-HHHHHcCCHHH-HHHHHhcCCHHHHHHHHHHHH
Confidence 12 2222 2467889999999889999999999999998654221 111 1223332 223466778889999999998
Q ss_pred HHHhhcCC----CcccchhhhHHHHHHHhccCCChhHH-HHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCCh--HHHH
Q 001368 216 AFAHIGGP----CLGVGELDNSATHCVKAIEDPIASVR-DAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKL--EGGL 288 (1091)
Q Consensus 216 ~l~~~~~~----~~~~~dlE~l~tl~~K~le~s~~~vR-~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~--e~~l 288 (1091)
.+...... +...+ .....++.+.+.+++.+ .+++++|..+-. .+.. + ..+ .+++
T Consensus 302 ~La~~~~e~~~~i~~~~----~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~---~~~~-----------~-~~i~~~g~l 362 (780)
T 2z6g_A 302 ILAYGNQESKLIILASG----GPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSSN-----------K-PAIVEAGGM 362 (780)
T ss_dssp HHHTTCHHHHHHHHTTT----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHT---STTH-----------H-HHHHHTTHH
T ss_pred HHhcCChHHHHHHHHcC----CHHHHHHHHhcCCHHHHHHHHHHHHHHhhc---ChHH-----------H-HHHHHhchH
Confidence 77642100 01112 23344555666655544 456666666542 1110 0 000 1222
Q ss_pred HHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhc
Q 001368 289 QRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTD 368 (1091)
Q Consensus 289 ~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~ 368 (1091)
. .|.. +++. ...+++.-++.+...+...-.. + + .....+..++.++.. .+...|+++..+|......
T Consensus 363 ~-~Ll~-lL~~---~~~~~~~~a~~~L~~L~~~~~~-~-~---~~~~~i~~Lv~lL~~---~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 363 Q-ALGL-HLTD---PSQRLVQNCLWTLRNLSDAATK-Q-E---GMEGLLGTLVQLLGS---DDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp H-HHGG-GTTC---SCHHHHHHHHHHHHHHHTTCTT-C-S---CCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHTSS
T ss_pred H-HHHH-HHcC---CchHHHHHHHHHHHHHhccchh-h-h---hhhhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhC
Confidence 2 2222 2222 2244554444444444322211 1 1 124556566676642 2344555555555544321
Q ss_pred cCCcHHH----HHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCc---hh-hHHHHHHHHHHHhcCCch-HHHHH
Q 001368 369 QMTEPTQ----RSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVP---SE-FKEVLDSTVVAAVSHSSQ-LVRIE 439 (1091)
Q Consensus 369 ~LgE~~Q----~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~---~~-~~~~l~d~l~~ll~hps~-svRi~ 439 (1091)
- .+..| ...+..+++.+...+..+.....|+..++.|...-++.. .. ........|+.+|.|++. .||-+
T Consensus 430 ~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~ 508 (780)
T 2z6g_A 430 N-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 508 (780)
T ss_dssp C-HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred C-HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHH
Confidence 0 01111 123444444443322222455577777776632111100 01 123457789999999997 99999
Q ss_pred HHHHHHHHHHh
Q 001368 440 AALTLRALAEV 450 (1091)
Q Consensus 440 AA~cLr~~~~a 450 (1091)
|+|+|+.++..
T Consensus 509 A~~aL~nLa~~ 519 (780)
T 2z6g_A 509 TVGLIRNLALC 519 (780)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhcC
Confidence 99999999853
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.22 E-value=0.082 Score=64.36 Aligned_cols=346 Identities=16% Similarity=0.089 Sum_probs=192.8
Q ss_pred HHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcch-hH---HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHH-HhhH
Q 001368 66 EDALYSLLILGARRPVRHLASVAMGRIISKGDNIS-VY---SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQ-FGRR 140 (1091)
Q Consensus 66 ~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~-lf---dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~-~G~~ 140 (1091)
...|.+++. ..-+.+|...+++|..+-...+... ++ +.+..+...|+.+ .++..+..|+.+|..+-.. -++.
T Consensus 16 i~~Lv~lL~-~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~--~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 16 IPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp HHHHHHHHT-CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC--CCHHHHHHHHHHHHHHhcChhhHH
Confidence 455556555 4567789999999999887654332 33 3577788888622 2455444677777765432 1233
Q ss_pred HhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Q 001368 141 ITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHI 220 (1091)
Q Consensus 141 l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~ 220 (1091)
..... ..+..+++.+++....+|..+..+|.++..+-......-....+... .-..+.+.+..++.++++||..+...
T Consensus 93 ~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~-Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 93 AIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQK-MVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHTT-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHH-HHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHc-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHH-HHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 22222 46778899999888999999999999999865321111111233442 33346667788999999999988853
Q ss_pred cCCC----cccchhhhHHHHHHHhccCCC-hhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCCh--HHHHHHHhh
Q 001368 221 GGPC----LGVGELDNSATHCVKAIEDPI-ASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKL--EGGLQRHLA 293 (1091)
Q Consensus 221 ~~~~----~~~~dlE~l~tl~~K~le~s~-~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~--e~~l~~~Ls 293 (1091)
.... ...+ .....++.+.+.+ ..++..++++|..+.. .+.. + ..+ .+++. .|.
T Consensus 171 ~~~~~~~i~~~g----~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~---~~~~-----------~-~~l~~~g~l~-~L~ 230 (644)
T 2z6h_A 171 NQESKLIILASG----GPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSSN-----------K-PAIVEAGGMQ-ALG 230 (644)
T ss_dssp CHHHHHHHHHTT----HHHHHHHHHTTCCCHHHHHHHHHHHHHHTT---CTTH-----------H-HHHHHTTHHH-HHH
T ss_pred CcHHHHHHHHcC----ChHHHHHHHHcCChHHHHHHHHHHHHHHhc---Cccc-----------H-HHHHHCCCHH-HHH
Confidence 2000 0111 2334455555544 4567778888777641 1110 0 001 12222 222
Q ss_pred hhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCcH
Q 001368 294 LPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEP 373 (1091)
Q Consensus 294 ~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE~ 373 (1091)
. +++. .+.++|..++.+...+-.. +..+ + .....+..++.++... +...+.++..+|...... ++.
T Consensus 231 ~-ll~~---~~~~~~~~a~~~L~nL~~~-~~~~-~---~~~~~i~~Lv~lL~~~---d~~v~~~a~~aL~~L~~~--~~~ 296 (644)
T 2z6h_A 231 L-HLTD---PSQRLVQNCLWTLRNLSDA-ATKQ-E---GMEGLLGTLVQLLGSD---DINVVTCAAGILSNLTCN--NYK 296 (644)
T ss_dssp T-TTTC---SCHHHHHHHHHHHHHHGGG-CTTC-C---SCHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTT--CHH
T ss_pred H-HHhc---CCHHHHHHHHHHHHHHhhc-chhh-h---hhhhHHHHHHHHHcCC---CHHHHHHHHHHHHHHHcC--CHH
Confidence 2 2333 2356666665555554322 1111 1 1245666667776522 344455555555444321 111
Q ss_pred HHH-----HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHHhcCCc-hHHHHHHHHH
Q 001368 374 TQR-----SFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPS----EFKEVLDSTVVAAVSHSS-QLVRIEAALT 443 (1091)
Q Consensus 374 ~Q~-----~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~----~~~~~l~d~l~~ll~hps-~svRi~AA~c 443 (1091)
.+. ..+..|++.+...+..+.+...|+..++.|...-++... -......+.|+++|.|++ ..+|.+|+|+
T Consensus 297 ~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 376 (644)
T 2z6h_A 297 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 376 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHH
Confidence 111 133444443332222244566788888877422111000 012356789999999997 6999999999
Q ss_pred HHHHHHh
Q 001368 444 LRALAEV 450 (1091)
Q Consensus 444 Lr~~~~a 450 (1091)
|+.++..
T Consensus 377 L~nLa~~ 383 (644)
T 2z6h_A 377 IRNLALC 383 (644)
T ss_dssp HHHHTTS
T ss_pred HHHHccC
Confidence 9999864
No 42
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.22 E-value=0.0044 Score=64.84 Aligned_cols=188 Identities=18% Similarity=0.136 Sum_probs=120.0
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHHhhcCC-cc-hhH--HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHH--HhhH
Q 001368 67 DALYSLLILGARRPVRHLASVAMGRIISKGD-NI-SVY--SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQ--FGRR 140 (1091)
Q Consensus 67 ~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD-~~-~lf--dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~--~G~~ 140 (1091)
+.|.+.+..+. +.+|...+++|..+-...+ .. .+. ..+..+..+++ +.++..+..|+.+|+.+-.. -.+.
T Consensus 5 ~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 5 EKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp HHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 44555555444 6668888888888766543 11 111 25667777776 33466555788999987642 1111
Q ss_pred HhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Q 001368 141 ITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHI 220 (1091)
Q Consensus 141 l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~ 220 (1091)
... -...+..+++.+++.+..+|..+..+|..+..+.......-...++... .-..+.|.+..||..|+.||..+...
T Consensus 81 ~~~-~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~-L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 81 AIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEV-LVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHH-HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH-HHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH-HHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 111 1236778899999888999999999999987522211111111123442 33347788899999999999999874
Q ss_pred cCCCcccchh-hhHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 001368 221 GGPCLGVGEL-DNSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1091)
Q Consensus 221 ~~~~~~~~dl-E~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa 261 (1091)
. +-....=. ........+.+++++..+|..++.+|+.+..
T Consensus 159 ~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 159 P-DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp C-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred C-HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 3 10000000 1356677888999999999999999999873
No 43
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.17 E-value=0.11 Score=60.70 Aligned_cols=347 Identities=16% Similarity=0.093 Sum_probs=187.5
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcc-hhH---HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHH-hh
Q 001368 65 CEDALYSLLILGARRPVRHLASVAMGRIISKGDNI-SVY---SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQF-GR 139 (1091)
Q Consensus 65 l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~-~lf---dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~-G~ 139 (1091)
....|.+++. ..-+.+|...+.+|..+-...+.. .++ +.+..+...|+.+ +++..+..|+.+|+.+-..- ++
T Consensus 18 ~i~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 18 AIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp HHHHHHHHHT-CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hHHHHHHHhC-CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCchhH
Confidence 4556666555 456677989999998887654432 233 4577788878632 24544446888888764321 22
Q ss_pred HHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHh
Q 001368 140 RITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAH 219 (1091)
Q Consensus 140 ~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~ 219 (1091)
..+.. ...+..+++.+++....+|..+..+|.++...-......-....+... .-..+.+.+..||..+++||..+..
T Consensus 95 ~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~-L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 95 LAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQK-MVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHH-HHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHH-HHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 22211 146778889999888899999999999998864422111112334443 3334677888999999999988875
Q ss_pred hcCCC----cccchhhhHHHHHHHhccCCCh-hHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCCh--HHHHHHHh
Q 001368 220 IGGPC----LGVGELDNSATHCVKAIEDPIA-SVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKL--EGGLQRHL 292 (1091)
Q Consensus 220 ~~~~~----~~~~dlE~l~tl~~K~le~s~~-~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~--e~~l~~~L 292 (1091)
..... ...+ .....++.+++.++ .++.+++++|..+.. .+.. + ..+ .+++. .|
T Consensus 173 ~~~~~~~~i~~~~----~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~-----------~-~~~~~~g~~~-~L 232 (529)
T 1jdh_A 173 GNQESKLIILASG----GPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSSN-----------K-PAIVEAGGMQ-AL 232 (529)
T ss_dssp TCHHHHHHHHHTT----HHHHHHHHHHHCCCHHHHHHHHHHHHHHTT---STTH-----------H-HHHHHTTHHH-HH
T ss_pred CCHHHHHHHHHCC----CHHHHHHHHHhCChHHHHHHHHHHHHHHhc---Cccc-----------H-HHHHHCCCHH-HH
Confidence 32000 1112 22334445555444 455566677666541 1110 0 000 12222 22
Q ss_pred hhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCc
Q 001368 293 ALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTE 372 (1091)
Q Consensus 293 s~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE 372 (1091)
.. +++. .+.++|-..+.+...+-..- ..+ + .....+..++.++.. .+...+.....+|...... ++
T Consensus 233 ~~-ll~~---~~~~~~~~a~~~L~~l~~~~-~~~-~---~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~L~~~--~~ 298 (529)
T 1jdh_A 233 GL-HLTD---PSQRLVQNCLWTLRNLSDAA-TKQ-E---GMEGLLGTLVQLLGS---DDINVVTCAAGILSNLTCN--NY 298 (529)
T ss_dssp HT-TTTS---SCHHHHHHHHHHHHHHHTTC-TTC-S---CCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTT--CH
T ss_pred HH-HHhC---CChHHHHHHHHHHHHHhcCC-hhh-H---HHHhHHHHHHHHHcC---CCHHHHHHHHHHHHHHhcC--CH
Confidence 22 2222 23555555554444443221 111 1 124556666777642 2344444444444443221 11
Q ss_pred HHHH-----HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCc---hhh-HHHHHHHHHHHhcCCch-HHHHHHHH
Q 001368 373 PTQR-----SFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVP---SEF-KEVLDSTVVAAVSHSSQ-LVRIEAAL 442 (1091)
Q Consensus 373 ~~Q~-----~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~---~~~-~~~l~d~l~~ll~hps~-svRi~AA~ 442 (1091)
..+. ..+..+++.+...+.++.....++..++.|...-++.. ..+ ..+..+.|+++|.|++. .+|..|+|
T Consensus 299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~ 378 (529)
T 1jdh_A 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHH
Confidence 1111 23334444333323334455678888877743211110 011 22456789999999984 99999999
Q ss_pred HHHHHHHh
Q 001368 443 TLRALAEV 450 (1091)
Q Consensus 443 cLr~~~~a 450 (1091)
+|+.++..
T Consensus 379 ~l~nl~~~ 386 (529)
T 1jdh_A 379 LIRNLALC 386 (529)
T ss_dssp HHHHHTTS
T ss_pred HHHHHhcC
Confidence 99999964
No 44
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.15 E-value=0.59 Score=56.92 Aligned_cols=357 Identities=10% Similarity=0.041 Sum_probs=199.7
Q ss_pred HHHHHHHHHHhh-cCCCchhhHHHHHHHHHHhhcCCcchhH-HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhH
Q 001368 63 RKCEDALYSLLI-LGARRPVRHLASVAMGRIISKGDNISVY-SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR 140 (1091)
Q Consensus 63 ~~l~~~L~~~l~-~~~g~P~R~l~a~cla~l~~~GD~~~lf-dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~ 140 (1091)
..+...+.+.+. ..+-|-+|+-++-|+.++|.......-+ +-++.+.+.|+ |.+|....+|+..++++.+.-+..
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~---d~d~~V~~~a~~~l~~i~~~~~~~ 221 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN---DQHLGVVTAATSLITTLAQKNPEE 221 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhC---CCCccHHHHHHHHHHHHHHhChHH
Confidence 456677777764 4577888999999999999974322211 45668888886 567877778999999998877766
Q ss_pred HhhcHHHHHHHHHHHhccC-------------cHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH---HHHHHhc-cC--
Q 001368 141 ITSGLLETTIIAAKLMKFN-------------EEFVRQEALLLLQNALEGSGGSAAASAYSEAFR---LIMRFAI-VD-- 201 (1091)
Q Consensus 141 l~s~~~e~~~~llK~lK~~-------------~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K---~~~r~~~-~D-- 201 (1091)
....++..+..+.+++-.. ..-++..+++.|++. +...++...+.++. .+++.+. +.
T Consensus 222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~----~~~~d~~~~~~l~~~L~~il~~~~~~~ks 297 (621)
T 2vgl_A 222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCY----PPPEDPAVRGRLTECLETILNKAQEPPKS 297 (621)
T ss_dssp HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGS----SSCSSHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHHHhhccCccc
Confidence 5566666666666654321 356788888777763 32223344443433 2333321 01
Q ss_pred -----c--chHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCC-
Q 001368 202 -----K--SFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPK- 273 (1091)
Q Consensus 202 -----k--s~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~- 273 (1091)
+ +..|...|++|+..+... ..-+........+.+.+++..+|-.+-+.+..+....-.+.. .++-
T Consensus 298 ~~l~~~n~~~aVl~ea~~~i~~l~~~------~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~-~~~~~ 370 (621)
T 2vgl_A 298 KKVQHSNAKNAVLFEAISLIIHHDSE------PNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEA-VKTHI 370 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHH-HHTTH
T ss_pred ccccccchHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHH-HHHHH
Confidence 1 347888888887776422 133456677777888888888888888888888843210000 0000
Q ss_pred ------CC-CCCC--CCCCh------------HHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCch
Q 001368 274 ------GK-GPFP--PAKKL------------EGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSE 332 (1091)
Q Consensus 274 ------~k-~~~~--~~k~~------------e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~ 332 (1091)
-+ .+.. +.+++ ++.+. .|. .|++. ...+.|.-+..+......... . +
T Consensus 371 ~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~-eL~-~yl~~---~d~~~~~~~v~~I~~la~k~~----~---~ 438 (621)
T 2vgl_A 371 ETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVA-EML-SYLET---ADYSIREEIVLKVAILAEKYA----V---D 438 (621)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHH-HHH-HHHHH---CCHHHHHHHHHHHHHHHHHHC----S---S
T ss_pred HHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHH-HHH-HHHHh---cCHHHHHHHHHHHHHHHHhcC----C---c
Confidence 00 0000 00111 12221 111 23333 245666655555544433332 2 2
Q ss_pred hhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhhcccCCCChhHHH---HHHHHHHHHHHH
Q 001368 333 LQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKI---AALRTLSYTLKT 409 (1091)
Q Consensus 333 ~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~~~~s~~~lv---~aL~el~~Ll~~ 409 (1091)
...|+..+++++..... ......+..+ ++.+... +..|..++..+++.++.++.....+- -.+.|-+.++..
T Consensus 439 ~~~~v~~Ll~ll~~~~~--~v~~ev~~~l-~~ii~~~--~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~ 513 (621)
T 2vgl_A 439 YTWYVDTILNLIRIAGD--YVSEEVWYRV-IQIVINR--DDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAG 513 (621)
T ss_dssp THHHHHHHHHHHHHHGG--GSCSHHHHHH-HHHHGGG--CSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHS
T ss_pred HHHHHHHHHHHHHhhcc--cchHHHHHHH-HHHHhCC--hhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcc
Confidence 35677777888773211 1111223333 3333211 23455566666666655554433322 345555555543
Q ss_pred hCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCc
Q 001368 410 LGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPT 453 (1091)
Q Consensus 410 LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~ 453 (1091)
-....+ ..+.+.+..-....+..||.++--++-.+....|.
T Consensus 514 ~~~~~p---~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~ 554 (621)
T 2vgl_A 514 DPRSSP---LIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE 554 (621)
T ss_dssp STTSCH---HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred cCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH
Confidence 221111 12334555566778899999999999999888876
No 45
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.02 E-value=0.11 Score=65.22 Aligned_cols=358 Identities=12% Similarity=0.056 Sum_probs=193.0
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHhhcC--Ccc-hhH------HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHH
Q 001368 65 CEDALYSLLILGARRPVRHLASVAMGRIISKG--DNI-SVY------SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYR 135 (1091)
Q Consensus 65 l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~G--D~~-~lf------dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~ 135 (1091)
....|..++. +..+-+|...+-||.++=+.| |.. ..| +.+..|..+|...+++...+. .|+.+|..+-.
T Consensus 331 gv~~L~~Ll~-s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~-~AveaLayLS~ 408 (810)
T 3now_A 331 GVDILKRLYH-SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRR-WAADGLAYLTL 408 (810)
T ss_dssp HHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHH-HHHHHHHHHTT
T ss_pred CcHHHHHHHc-CCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHHHhC
Confidence 3466666665 344567999999999996543 332 455 336667777774432222333 68888886632
Q ss_pred HHh--hHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCC------------CC-----------chhHHH--
Q 001368 136 QFG--RRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGG------------SA-----------AASAYS-- 188 (1091)
Q Consensus 136 ~~G--~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~------------~~-----------~~~~~~-- 188 (1091)
..- ..+ ..-...+..++.++|+.+..+.+.+..+|.++..|--. .. ++...+
T Consensus 409 ~~~vk~~l-v~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r 487 (810)
T 3now_A 409 DAECKEKL-IEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKR 487 (810)
T ss_dssp SHHHHHHH-HHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHH
T ss_pred CcHHHHHH-HHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHH
Confidence 211 122 22245778888999988888999999999999986410 00 011111
Q ss_pred --HHHHH----HHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchh--hhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 189 --EAFRL----IMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGEL--DNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 189 --di~K~----~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dl--E~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
.+.+. .+-..+...+..||..|+++|..+.... .. ...+ .......++.+.+.+..+|..+|.+|+.+.
T Consensus 488 ~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~--r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~ 564 (810)
T 3now_A 488 ITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-EL--RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564 (810)
T ss_dssp HHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-HH--HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HH--HHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHh
Confidence 22221 2223355677899999999999998642 11 1100 123455666777888999999999999988
Q ss_pred HhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCC--chh-hHHH
Q 001368 261 ALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPD--SEL-QDYA 337 (1091)
Q Consensus 261 a~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~--~~~-~~y~ 337 (1091)
... .|... - ++ ....+++. .|.. ++... .+. ...+++-.++-...... +.+ ... ...+
T Consensus 565 ~~~-~p~~~-~--~~------~~~~~aIp-pLv~-LL~~~--~~~---l~~~eAl~AL~NLa~~~--d~~~~~Ii~aG~l 625 (810)
T 3now_A 565 ITI-NPEVS-F--SG------QRSLDVIR-PLLN-LLQQD--CTA---LENFESLMALTNLASMN--ESVRQRIIKEQGV 625 (810)
T ss_dssp HHS-CHHHH-T--TT------HHHHHTHH-HHHH-TTSTT--SCH---HHHHHHHHHHHHHTTSC--HHHHHHHHHTTHH
T ss_pred cCC-Chhhh-h--cc------hhhhcHHH-HHHH-HhCCC--CcH---HHHHHHHHHHHHHhcCC--HHHHHHHHHcCCH
Confidence 542 22100 0 00 00112231 2222 12211 011 11112222222222110 000 000 1234
Q ss_pred HHHHHHhcc-CCCccHHHHHHHHHHHHHhhhccCCcHHHHH------HHHHHHhhcccCCCChhHHHHHHHHHHHHHHHh
Q 001368 338 LQVMDMLRA-DIFVDSHALACVLYILRIGVTDQMTEPTQRS------FLVFLGKQLQAVDASPFMKIAALRTLSYTLKTL 410 (1091)
Q Consensus 338 ~~i~~ll~~-~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q~~------~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~L 410 (1091)
..+.+++.+ +..+...+.+|+..|. .++..|.+ .+..+++-+.+. +...-..|..+++.|...=
T Consensus 626 ~~Lv~LL~s~~~~Vq~~A~~~L~NLa-------~~~~~~~~~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanLt~~s 696 (810)
T 3now_A 626 SKIEYYLMEDHLYLTRAAAQCLCNLV-------MSEDVIKMFEGNNDRVKFLALLCEDE--DEETATACAGALAIITSVS 696 (810)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHT-------TSHHHHHHHHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHh-------CChHHHHHHHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCC
Confidence 456666653 2233334445665552 23344433 334444444333 3334445666777666530
Q ss_pred CCCchhhH--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcchh
Q 001368 411 GEVPSEFK--EVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVS 456 (1091)
Q Consensus 411 Gsa~~~~~--~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~~~ 456 (1091)
......+. .+..++|+.+|.|++..+|-.|+|+|..++...+.+..
T Consensus 697 ~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~ 744 (810)
T 3now_A 697 VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAK 744 (810)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 00111222 35778999999999999999999999999986654433
No 46
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.98 E-value=0.31 Score=59.24 Aligned_cols=363 Identities=12% Similarity=0.003 Sum_probs=189.6
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcc-hhHH--hHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhH
Q 001368 64 KCEDALYSLLILGARRPVRHLASVAMGRIISKGDNI-SVYS--RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR 140 (1091)
Q Consensus 64 ~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~-~lfd--tvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~ 140 (1091)
.....|.+++..+..+.+|+..+++|..+-..-+.. .+++ .+..|..+|+ +.++..+..|+.+|+.+-......
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG---SPVDSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTT---CSSHHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHhCcchh
Confidence 566788888887777888999999998755432211 1222 4566777775 335665557889999887643221
Q ss_pred Hhhc-HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC----chhHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 001368 141 ITSG-LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA----AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLK 215 (1091)
Q Consensus 141 l~s~-~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~----~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~ 215 (1091)
.... -...+..+++.+++.+..+|..+..+|.++..+..... +......+.+ ..+ ++..-.++..++++|.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~-lL~---~~~~~~~~~~a~~~L~ 208 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN-IMR---TYTYEKLLWTTSRVLK 208 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH-HHT---TCCCHHHHHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHH-HHH---cCChHHHHHHHHHHHH
Confidence 1111 13467788999998888899888888888775321000 0111222333 222 2234567888899988
Q ss_pred HHHhhcCCCcccchh-hhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhh
Q 001368 216 AFAHIGGPCLGVGEL-DNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLAL 294 (1091)
Q Consensus 216 ~l~~~~~~~~~~~dl-E~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~ 294 (1091)
.+.... . ....=+ ........+.+.+.+..+|..++.+|+.+... . +. ....++++. .|..
T Consensus 209 nLs~~~-~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~-~-~~-------------~~~~~~~i~-~Lv~ 270 (644)
T 2z6h_A 209 VLSVCS-S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA-A-TK-------------QEGMEGLLG-TLVQ 270 (644)
T ss_dssp HHTTCT-T-HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG-C-TT-------------CCSCHHHHH-HHHH
T ss_pred HHhcCc-c-cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-c-hh-------------hhhhhhHHH-HHHH
Confidence 887532 1 100001 12456777888889999999999999998421 1 11 012234442 3332
Q ss_pred hhcccCCCCcchhHHHHHHHHHHHHHHhc---cccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCC
Q 001368 295 PFTRANGAKSKNMRVNLTLSWVYFLQAIR---LKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMT 371 (1091)
Q Consensus 295 ~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg---~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~Lg 371 (1091)
. ++. ...++|...+.+...+-..-. ....+ ...+..+++++..+...+. .+.-.-..|+.... .-+
T Consensus 271 l-L~~---~d~~v~~~a~~aL~~L~~~~~~~~~~v~~-----~g~v~~Lv~lL~~~~~~~~-v~~~a~~aL~nL~~-~~~ 339 (644)
T 2z6h_A 271 L-LGS---DDINVVTCAAGILSNLTCNNYKNKMMVCQ-----VGGIEALVRTVLRAGDRED-ITEPAICALRHLTS-RHQ 339 (644)
T ss_dssp H-TTC---SCHHHHHHHHHHHHHHHTTCHHHHHHHHH-----TTHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHTS-SST
T ss_pred H-HcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHH-----cCCHHHHHHHHHccCCcHH-HHHHHHHHHHHHhc-CCc
Confidence 2 222 346666655555544422100 00000 1123345555553221112 22222222233332 122
Q ss_pred c--HHHH-----HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchh----hHHHHHHHHHHHhcCCchHHHHHH
Q 001368 372 E--PTQR-----SFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSE----FKEVLDSTVVAAVSHSSQLVRIEA 440 (1091)
Q Consensus 372 E--~~Q~-----~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~----~~~~l~d~l~~ll~hps~svRi~A 440 (1091)
| ..|. ..+..+.+.+.+. .++.....++..++.|. ..... ...++...|+++|.+++..+|..|
T Consensus 340 ~~~~~q~~v~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nLa----~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a 414 (644)
T 2z6h_A 340 EAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLA----LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414 (644)
T ss_dssp THHHHHHHHHHTTHHHHHHHTTSTT-CCHHHHHHHHHHHHHHT----TSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHccChHHHHHHhCcc-CchHHHHHHHHHHHHHc----cCHHHHHHHHHcCCHHHHHHHHhccchhhhhHh
Confidence 3 3443 2344555544332 12334445555555553 22221 234578899999999999999999
Q ss_pred HHHHHH--HHHhCCcchhhHHHHHHHHHHhh
Q 001368 441 ALTLRA--LAEVDPTCVSGLITYGVTTLNAL 469 (1091)
Q Consensus 441 A~cLr~--~~~a~P~~~~~ll~~~~~~L~~~ 469 (1091)
+|++-. +.. -....++...+...|..+
T Consensus 415 ~~al~n~~~~~--~~~~~~v~~~a~~aL~~L 443 (644)
T 2z6h_A 415 SMGGTQQQFVE--GVRMEEIVEGCTGALHIL 443 (644)
T ss_dssp ---------CC--SSCHHHHHHHHHHHHHHH
T ss_pred hhccccchhcc--cccHHHHHHHHHHHHHHH
Confidence 997765 221 112345555666666555
No 47
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.87 E-value=0.13 Score=60.96 Aligned_cols=388 Identities=12% Similarity=0.061 Sum_probs=214.7
Q ss_pred HHHHHhhhccCCCCchHHHHHHHHHHHhhccCChhhHHH-HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCC--c
Q 001368 22 LESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILL-WQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGD--N 98 (1091)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~f~~L~~L~~~l~~~~k~di~~-~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD--~ 98 (1091)
+|.+|... +++++...++-++.+.|.+......-+.. .+.-+...|.+++.....|.++..++.||..|-+..+ +
T Consensus 78 l~~lv~~l--~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 78 VEDIVKGI--NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp HHHHHHHH--TSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 45555543 45667777888888888775433322222 2334677788888888888889999999999865432 2
Q ss_pred chhHH--hHHHHHHhhhcCCCCChHhHHHHHHHHHHHHH---HHhhHHhhcHHHHHHHHHHHhccC-----cHHHHHHHH
Q 001368 99 ISVYS--RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYR---QFGRRITSGLLETTIIAAKLMKFN-----EEFVRQEAL 168 (1091)
Q Consensus 99 ~~lfd--tvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~---~~G~~l~s~~~e~~~~llK~lK~~-----~a~~R~~~l 168 (1091)
..+.+ .|..|..+++ ..++..+-.|+.+||.+-. ..-+.+.. .-.+..++++++.. .......+.
T Consensus 156 ~~vv~~Gaip~Lv~LL~---s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~--~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLA---SPHAHISEQAVWALGNIAGAGSAFRDLVIK--HGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp HHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhccCHHHHHHHHH--cCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 23333 4667777775 3345544468888887742 22222211 12355677777652 234556777
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc-ccchhhhHHHHHHHhccCCChh
Q 001368 169 LLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL-GVGELDNSATHCVKAIEDPIAS 247 (1091)
Q Consensus 169 ~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE~l~tl~~K~le~s~~~ 247 (1091)
.++..+.++-.........+.+... .-..+.+....|+..|+.||..+.... ... ..---..+...+++.+.+++..
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~-L~~LL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~ 308 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPT-LVRLLHHNDPEVLADSCWAISYLTDGP-NERIEMVVKKGVVPQLVKLLGATELP 308 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHH-HHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHTTTCHHHHHHHHTCSCHH
T ss_pred HHHHHHHhcccchhhHHHHhhHHHH-HHHHhcCCcHHHHHHHHHHHHHhhhhh-hhhHHHHHhccchHHHHHHhcCCChh
Confidence 8888888876655544445666663 344577888999999999998888653 100 0000013455677889999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChH-HHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccc-
Q 001368 248 VRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLE-GGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLK- 325 (1091)
Q Consensus 248 vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e-~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~- 325 (1091)
++..++++|+.+....-..... -.+ +++ ..|.. +++. ...++|.-.+.+...+.. |..
T Consensus 309 v~~~a~~aL~nl~~~~~~~~~~-------------i~~~g~l-~~L~~-LL~~---~~~~i~~~a~~aL~nl~~--~~~~ 368 (529)
T 3tpo_A 309 IVTPALRAIGNIVTGTDEQTQK-------------VIDAGAL-AVFPS-LLTN---PKTNIQKEATWTMSNITA--GRQD 368 (529)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHH-------------HHHTTGG-GGHHH-HTTC---SSHHHHHHHHHHHHHHHT--SCHH
T ss_pred HHHHHHHHHHHHHccchHHHHH-------------HhhcccH-HHHHH-HHcC---CCHHHHHHHHHHHHHHhc--ccHH
Confidence 9999999999986321000000 000 011 01111 1222 235555544433333321 110
Q ss_pred cCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCcHHHH------HHHHHHHhhcccCCCChhHHHHH
Q 001368 326 YFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQR------SFLVFLGKQLQAVDASPFMKIAA 399 (1091)
Q Consensus 326 ~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q~------~~~~~l~~~~~~~~~s~~~lv~a 399 (1091)
.... ......+..++.++... +...++.+.+.|...... |...|. .++..|++.+...| +....++
T Consensus 369 ~~~~-v~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~nl~~~--~~~~~~~~l~~~g~i~~L~~LL~~~d--~~i~~~~ 440 (529)
T 3tpo_A 369 QIQQ-VVNHGLVPFLVGVLSKA---DFKTQKAAAWAITNYTSG--GTVEQIVYLVHCGIIEPLMNLLSAKD--TKIIQVI 440 (529)
T ss_dssp HHHH-HHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHH--SCHHHHHHHHHTTCHHHHHHGGGCSC--HHHHHHH
T ss_pred HHHH-HHhcCcHHHHHHHhcCC---CHHHHHHHHHHHHHHHcC--CCHHHHHHHHHCcCHHHHHHHhcCCC--HHHHHHH
Confidence 0000 00012233344454422 222333333343433311 222232 13445555554443 4466789
Q ss_pred HHHHHHHHHH---hCCCchhhH---H--HHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 001368 400 LRTLSYTLKT---LGEVPSEFK---E--VLDSTVVAAVSHSSQLVRIEAALTLRAL 447 (1091)
Q Consensus 400 L~el~~Ll~~---LGsa~~~~~---~--~l~d~l~~ll~hps~svRi~AA~cLr~~ 447 (1091)
|+.+..+++. +|+. ..+. + +..|.+-.+..|++..|+-.|..-+..|
T Consensus 441 L~aL~nil~~~~~~~~~-~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 441 LDAISNIFQAAEKLGET-EKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHHHHHHHTTTCH-HHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhccCh-HHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999998863 3332 1111 1 3467888899999999999887777655
No 48
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.84 E-value=0.41 Score=60.09 Aligned_cols=170 Identities=12% Similarity=0.016 Sum_probs=97.8
Q ss_pred HHHHHHHHhhc--CCcchhH---HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHH-HHhhHHhhcHHHHHHHHHHHhcc
Q 001368 85 ASVAMGRIISK--GDNISVY---SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYR-QFGRRITSGLLETTIIAAKLMKF 158 (1091)
Q Consensus 85 ~a~cla~l~~~--GD~~~lf---dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~-~~G~~l~s~~~e~~~~llK~lK~ 158 (1091)
.+..+..||.. .-+..+| ..+..+...++ ++ ++...-.|+.++|.+-. ..-|....-. -+..+.+++|+
T Consensus 267 a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~-s~--~~~~q~~A~~al~~aa~~~~~R~~I~~~--gv~~L~~Ll~s 341 (810)
T 3now_A 267 VTVAITALLNGPLDVGNQVVAREGILQMILAMAT-TD--DELQQRVACECLIAASSKKDKAKALCEQ--GVDILKRLYHS 341 (810)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHH-SS--CHHHHHHHHHHHHHHTTSHHHHHTTHHH--HHHHHHHHTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhC-CC--CHHHHHHHHHHHHHHcCCcHHHHHHHHc--CcHHHHHHHcC
Confidence 44555556553 1122233 34444555554 21 23222257777765422 1122222222 23778888887
Q ss_pred CcHHHHHHHHHHHHHHHhcCC--C---CCchhHHHHHHHHHHHHhccCc--chHHHHHHHHHHHHHHhhcCCCc-ccchh
Q 001368 159 NEEFVRQEALLLLQNALEGSG--G---SAAASAYSEAFRLIMRFAIVDK--SFVVRIAGARCLKAFAHIGGPCL-GVGEL 230 (1091)
Q Consensus 159 ~~a~~R~~~l~~L~kil~g~g--~---~~~~~~~~di~K~~~r~~~~Dk--s~~Vr~aAa~cL~~l~~~~~~~~-~~~dl 230 (1091)
....+|..++.+|.|+-..-+ . ...+....++.+. ++..+.+. +..||.-|+++|..|........ ...|
T Consensus 342 ~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~-l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d- 419 (810)
T 3now_A 342 KNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEA-CRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIED- 419 (810)
T ss_dssp SCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHH-HHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHc-
Confidence 777889999999998754222 1 1122335677774 44444443 78899999999998876430000 0111
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 001368 231 DNSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1091)
Q Consensus 231 E~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa 261 (1091)
.......++.+.+.+..+...++..|+.+-.
T Consensus 420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~ 450 (810)
T 3now_A 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCN 450 (810)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred cchHHHHHHHhCCCChHHHHHHHHHHHHHcC
Confidence 2345556677778899999999999999874
No 49
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.84 E-value=0.012 Score=60.24 Aligned_cols=184 Identities=16% Similarity=0.102 Sum_probs=117.9
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHhhcCCcc--hhH--HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHH---HHhhH
Q 001368 68 ALYSLLILGARRPVRHLASVAMGRIISKGDNI--SVY--SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYR---QFGRR 140 (1091)
Q Consensus 68 ~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~--~lf--dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~---~~G~~ 140 (1091)
.|.+++. .+-+.+|...+++|..+-...+.. .+. ..+..+..+|+ +.++..+..|+.+||.+-. ..-+.
T Consensus 16 ~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 16 QMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp HHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 3444443 455777888888888876432221 111 34667777776 3456656679999998752 11122
Q ss_pred HhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Q 001368 141 ITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHI 220 (1091)
Q Consensus 141 l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~ 220 (1091)
+. -...+..+++.++..+..+|..+..+|.++..+.......-....+.+. .-..+.+.+..||..|+.+|..+...
T Consensus 92 i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~-L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 92 VI--DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA-LVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HH--HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH-HHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HH--HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHH-HHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 21 1236778899999988999999999999987632211111111223342 22346778899999999999999875
Q ss_pred cCCCcccchh--hhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 221 GGPCLGVGEL--DNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 221 ~~~~~~~~dl--E~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
. +-. ...+ ........+.+++++..+|..++.+|+.+.
T Consensus 169 ~-~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 G-NEQ-KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp C-HHH-HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred C-cHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 3 110 0111 135667788899999999999999998863
No 50
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.81 E-value=2 Score=54.33 Aligned_cols=488 Identities=13% Similarity=0.049 Sum_probs=239.5
Q ss_pred HHHHHHHHHHhhcCC--CchhhHHHHHHHHHHhhcC--CcchhHHhHHHHHHhhhcC--CCCChHhHHHHHHHHHHHHHH
Q 001368 63 RKCEDALYSLLILGA--RRPVRHLASVAMGRIISKG--DNISVYSRVSSLQGFLSDG--KKSEPQKVAGAAQCLGELYRQ 136 (1091)
Q Consensus 63 ~~l~~~L~~~l~~~~--g~P~R~l~a~cla~l~~~G--D~~~lfdtvn~l~~iL~~~--K~~sp~~~~aA~~cLG~l~~~ 136 (1091)
..+++.|.+.+...+ ++.+|+-++.|++.|.... +.-+ +-+..+...++.. -..++.....++.+|..+-|.
T Consensus 99 ~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee 176 (963)
T 2x19_B 99 ESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP--CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEE 176 (963)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHCC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccc--hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHH
Confidence 456677777776643 4777999999999999872 2222 3333555545310 011344444788888888764
Q ss_pred H-------------hhHHhhcHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHHHHhc
Q 001368 137 F-------------GRRITSGLLETTIIAAKLMKFNE--EFVRQEALLLLQNALEGSGGSAA--ASAYSEAFRLIMRFAI 199 (1091)
Q Consensus 137 ~-------------G~~l~s~~~e~~~~llK~lK~~~--a~~R~~~l~~L~kil~g~g~~~~--~~~~~di~K~~~r~~~ 199 (1091)
. .+.+...++.++..+.+.+..+. ..++..+++++..-+. +|...+ ..+..-+++ ++
T Consensus 177 ~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~-----~l 250 (963)
T 2x19_B 177 FQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFA-----AL 250 (963)
T ss_dssp HTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHH-----HT
T ss_pred HhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHH-----Hh
Confidence 3 12234567778888888886532 2488889999988777 775443 333333333 24
Q ss_pred cCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHH-------HHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCC
Q 001368 200 VDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATH-------CVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQP 272 (1091)
Q Consensus 200 ~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl-------~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~ 272 (1091)
. ...+|.+|++|+.+++....+.-...-+..+... +.++.+..+......+++++..+.-.... .- .
T Consensus 251 ~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~-~l-~-- 324 (963)
T 2x19_B 251 Q--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSR-AL-L-- 324 (963)
T ss_dssp T--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-HH-H--
T ss_pred C--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHH-HH-H--
Confidence 3 4568899999999998742110011112222111 22344556667788888888876632111 00 0
Q ss_pred CCCCCCCCCCChHHHHHHHhhhhhcccCC--CCcchhHHHHHHHHHHHHHHhc-------cccCCCCchhhHHHHHHHHH
Q 001368 273 KGKGPFPPAKKLEGGLQRHLALPFTRANG--AKSKNMRVNLTLSWVYFLQAIR-------LKYFHPDSELQDYALQVMDM 343 (1091)
Q Consensus 273 ~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~--~~~r~~R~Gv~~ayv~fl~~lg-------~~~le~~~~~~~y~~~i~~l 343 (1091)
+... ....+.+.+. ++.. +.+..| ....+++.-+.+.|..+...+- ....+ ....++..++..
T Consensus 325 --~~~~-~~~~~~~~l~-~ll~-~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~ 396 (963)
T 2x19_B 325 --DQVE-HWQSFLALVN-MIMF-CTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQ---VYRPVYFQLVDV 396 (963)
T ss_dssp --HCGG-GHHHHHHHHH-HHHH-HHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred --cCcc-chHHHHHHHH-HHHH-HHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHH---HHHHHHHHHHHH
Confidence 0000 0012233332 2222 222111 1234555556666777666321 00000 012233233332
Q ss_pred hc----cCCCc-------c---H--HHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhhcccCCCChhHH--HHHHHHHHH
Q 001368 344 LR----ADIFV-------D---S--HALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMK--IAALRTLSY 405 (1091)
Q Consensus 344 l~----~~~~~-------~---~--~~r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~~~~s~~~l--v~aL~el~~ 405 (1091)
+- -+... | . ..|+++.-+|+. +...+|+..-..+...+.+.+.....++.|- =.++.+++.
T Consensus 397 ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~-~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~ 475 (963)
T 2x19_B 397 LLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMY-VYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQS 475 (963)
T ss_dssp HHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHH-HHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHH-HHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 22 11110 1 1 124444444444 3334454433333333333332211122343 367777777
Q ss_pred HHHHhCCCchhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh---CCcchhhHHHHHHHHHHhhhhhhccccCCccc
Q 001368 406 TLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEV---DPTCVSGLITYGVTTLNALRENVSFEKGSSLM 482 (1091)
Q Consensus 406 Ll~~LGsa~~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a---~P~~~~~ll~~~~~~L~~~~~~l~~~~~~~~~ 482 (1091)
+...+.....+....+.+.+.++ ..++..||..+.|++-.|+.. .|.++.+++..+++.|+.
T Consensus 476 i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~-------------- 540 (963)
T 2x19_B 476 IAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN-------------- 540 (963)
T ss_dssp HTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--------------
T ss_pred HHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--------------
Confidence 76665543334433444433332 334667999999999998865 356777777777666531
Q ss_pred chhhhhchHH-HHHHHHHhhcCCCCCccCCchhHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHhhccCCh----hh
Q 001368 483 VELDSLHGQA-TVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPK----EE 557 (1091)
Q Consensus 483 ~~~~~~~G~a-~alAALl~~~~~~pLgvp~~~~~~V~~~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~~~----~~ 557 (1091)
+ ++..+| .++..+....+. .-.|+ ...++..-.+++.+..-+.. .....---++.+..-.|+ +|
T Consensus 541 --~-~V~~~A~~al~~l~~~~~~--~l~p~--~~~il~~l~~~l~~~~~~~~----~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 541 --P-ELSVSSVSTLKKICRECKY--DLPPY--AANIVAVSQDVLMKQIHKTS----QCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp --G-GGHHHHHHHHHHHHHHTGG--GCTTT--HHHHHHHHHHHHHTTCSCHH----HHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred --c-hHHHHHHHHHHHHHHHHHH--HHHhh--HHHHHHHHHHHhccCCCChH----HHHHHHHHHHHHHhcCCHHHHHHH
Confidence 0 122222 334444443332 23455 46666666666665321111 111111113333322332 34
Q ss_pred HhhcHHHHHHHHHhhcCCCchhhhhhccchhhHHHHHHHHHHHHHHHHHhc
Q 001368 558 LEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCF 608 (1091)
Q Consensus 558 Vk~hl~qLLlLWk~~l~~s~~~~~~~~~e~~~~L~~r~~AL~aL~sFL~~~ 608 (1091)
+..-++.+...|+........+ + ....+...+.||....+.+
T Consensus 610 ~~~l~~~l~~~l~~~~~~~~~~------~---~~~~~~~~l~~l~~i~~~~ 651 (963)
T 2x19_B 610 LHSLISPYIQQLEKLAEEIPNP------S---NKLAIVHILGLLSNLFTTL 651 (963)
T ss_dssp HHHHHHHHHHHHHHHHSSCSCH------H---HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCH------H---HHHHHHHHHHHHHHHHHHc
Confidence 4445555668888765321100 0 1123456677776666653
No 51
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.022 Score=61.99 Aligned_cols=137 Identities=12% Similarity=0.030 Sum_probs=97.0
Q ss_pred CCChHhHHHHHHHHHHHHHHHhhHH------hhcHHHHHHHHH-HHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Q 001368 117 KSEPQKVAGAAQCLGELYRQFGRRI------TSGLLETTIIAA-KLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSE 189 (1091)
Q Consensus 117 ~~sp~~~~aA~~cLG~l~~~~G~~l------~s~~~e~~~~ll-K~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~d 189 (1091)
|.-......|+.|+..+.+.+|... ......++..++ |.+.+.-..+|..++.++-.+++..+ .. +.+..+
T Consensus 66 DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-~~-~~~~e~ 143 (278)
T 4ffb_C 66 DSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-SI-TQSVEL 143 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-SS-HHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-cH-HHHHHH
Confidence 4444444468888888777655332 222333444333 66777778999999999998887655 22 344444
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCC-cc-cchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 190 AFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPC-LG-VGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 190 i~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~-~~-~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
+.. ++..|+.-||.++..+|..++...|+- +. ...++.+...+.|.++++|..||.++.++++++.
T Consensus 144 l~~-----~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 144 VIP-----FFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HGG-----GGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHH-----HHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 444 578899999999999999988874333 22 3456778889999999999999999999999986
No 52
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.74 E-value=0.43 Score=60.80 Aligned_cols=172 Identities=12% Similarity=0.039 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHHhhcCCcchhHH-hHHHHHHhhhc--CCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhc
Q 001368 81 VRHLASVAMGRIISKGDNISVYS-RVSSLQGFLSD--GKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMK 157 (1091)
Q Consensus 81 ~R~l~a~cla~l~~~GD~~~lfd-tvn~l~~iL~~--~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK 157 (1091)
-|+-++.|+..++.... ..+++ ..+.+...+.. +...+...+-||+.++|.+-+..........+..+..+ -.+.
T Consensus 437 ~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l-~~l~ 514 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVL-AEIP 514 (971)
T ss_dssp HHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHH-HHSC
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH-HhcC
Confidence 47889999988887643 22332 22233444431 01123344448999999997766655544556666633 3334
Q ss_pred c--CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHH
Q 001368 158 F--NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSAT 235 (1091)
Q Consensus 158 ~--~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~t 235 (1091)
. .|+.+|..++.+++...+-.+.. ...+..++...++. + | ..|+.+||.++..+....+..+ ..-++.+..
T Consensus 515 ~~d~~~~vr~~a~~~l~~~~~~l~~~--~~~l~~vl~~l~~~-l-~--~~v~~~A~~al~~l~~~~~~~l-~p~~~~ll~ 587 (971)
T 2x1g_F 515 YEKLNVKLLGTALETMGSYCNWLMEN--PAYIPPAINLLVRG-L-N--SSMSAQATLGLKELCRDCQLQL-KPYADPLLN 587 (971)
T ss_dssp TTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHH-H-H--SSCHHHHHHHHHHHHHHCHHHH-HHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHH-h-C--hHHHHHHHHHHHHHHHHHHHhc-cccHHHHHH
Confidence 2 48999999999999988766632 34566666654543 4 4 6799999999999887642111 234677888
Q ss_pred HHHHhccC--CChhHHHHHHHHHHHHHH
Q 001368 236 HCVKAIED--PIASVRDAFAEALGSLLA 261 (1091)
Q Consensus 236 l~~K~le~--s~~~vR~a~A~~Lg~lLa 261 (1091)
.+++.++. .+...|..+-+++|.++.
T Consensus 588 ~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 588 ACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 88899988 457899999999999984
No 53
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.59 E-value=0.02 Score=60.30 Aligned_cols=150 Identities=16% Similarity=0.097 Sum_probs=99.6
Q ss_pred hHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHH--HhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCC
Q 001368 104 RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQ--FGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGS 181 (1091)
Q Consensus 104 tvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~--~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~ 181 (1091)
.+..|..+|+ +.++..+..|+.+|+.+-.. -.+...- -...+..+++.+++.+..+|..++.+|.++..+-...
T Consensus 55 ~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 130 (252)
T 4db8_A 55 ALPALVQLLS---SPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130 (252)
T ss_dssp HHHHHHHGGG---CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH
Confidence 5667777786 33466555788889877641 1111111 1136788999999988999999999999985532211
Q ss_pred CchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccch-h-hhHHHHHHHhccCCChhHHHHHHHHHHHH
Q 001368 182 AAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGE-L-DNSATHCVKAIEDPIASVRDAFAEALGSL 259 (1091)
Q Consensus 182 ~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~d-l-E~l~tl~~K~le~s~~~vR~a~A~~Lg~l 259 (1091)
.+.-...++... .-..+.|.+..||..|+.+|..+.... +.. ... . ......+++.+++++..+|..++.+|+.+
T Consensus 131 ~~~~~~~~~i~~-L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 207 (252)
T 4db8_A 131 IQAVIDAGALPA-LVQLLSSPNEQILQEALWALSNIASGG-NEQ-IQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 207 (252)
T ss_dssp HHHHHHTTHHHH-HHHGGGCSCHHHHHHHHHHHHHHTTSC-HHH-HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHH-HHHHHhCCCHHHHHHHHHHHHHHHcCC-hHH-HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 011112234443 334577889999999999999998743 100 000 0 23566778889999999999999999998
Q ss_pred H
Q 001368 260 L 260 (1091)
Q Consensus 260 L 260 (1091)
.
T Consensus 208 ~ 208 (252)
T 4db8_A 208 A 208 (252)
T ss_dssp T
T ss_pred h
Confidence 7
No 54
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.46 E-value=0.26 Score=58.44 Aligned_cols=283 Identities=13% Similarity=0.066 Sum_probs=142.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcc
Q 001368 148 TTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA-AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLG 226 (1091)
Q Consensus 148 ~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~-~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~ 226 (1091)
.+..+.+.++++....+..+++.++|++..-.... +.-+...+....++....+....+|..|+.||..++..+ +.-.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~ 155 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQT 155 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHH
Confidence 34557778888888888899999999986443322 222222233323443324566889999999999998754 1000
Q ss_pred cchhh-hHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcc
Q 001368 227 VGELD-NSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSK 305 (1091)
Q Consensus 227 ~~dlE-~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r 305 (1091)
..=++ ......++.+.+++..+|..++.+|+.+.......+...... ..-+.+..+|..+. ..
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~---------g~i~~Ll~lL~~~~-------~~ 219 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKH---------GAIDPLLALLAVPD-------LS 219 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT---------TCHHHHHHTTCSSC-------GG
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHc---------CCcHHHHHHHhccc-------hh
Confidence 00011 245677789999999999999999999873211000000000 00011112222211 11
Q ss_pred hhHHHHHHHHHHHHHHh--ccccCCCCchhhHHHHHHHHHhccCC-CccHHHHHHHHHHHHHhhhccCCcHHHH----HH
Q 001368 306 NMRVNLTLSWVYFLQAI--RLKYFHPDSELQDYALQVMDMLRADI-FVDSHALACVLYILRIGVTDQMTEPTQR----SF 378 (1091)
Q Consensus 306 ~~R~Gv~~ayv~fl~~l--g~~~le~~~~~~~y~~~i~~ll~~~~-~~~~~~r~~v~~ILr~~i~~~LgE~~Q~----~~ 378 (1091)
....++....+..+..+ +..-..........+..+..++..+. .+-..+..++.|+... -.|..|. .+
T Consensus 220 ~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~-----~~~~~~~v~~~g~ 294 (529)
T 3tpo_A 220 TLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-----PNERIEMVVKKGV 294 (529)
T ss_dssp GSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-----CHHHHHHHHTTTC
T ss_pred HhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh-----hhhhHHHHHhccc
Confidence 11122211111122221 11000000001222333444443211 1111223444444211 0111111 12
Q ss_pred HHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhh-----HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCc
Q 001368 379 LVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEF-----KEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPT 453 (1091)
Q Consensus 379 ~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~-----~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~ 453 (1091)
+..+++.+.+ ++......++..++.+.. ..... ..+....|..+|.||+..+|-+|+|+|..++...+.
T Consensus 295 i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~----~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~ 368 (529)
T 3tpo_A 295 VPQLVKLLGA--TELPIVTPALRAIGNIVT----GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 368 (529)
T ss_dssp HHHHHHHHTC--SCHHHHHHHHHHHHHHTT----SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHhcC--CChhHHHHHHHHHHHHHc----cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHH
Confidence 2334443322 344455677887777642 22222 234567899999999999999999999999866555
Q ss_pred chhhH
Q 001368 454 CVSGL 458 (1091)
Q Consensus 454 ~~~~l 458 (1091)
+...+
T Consensus 369 ~~~~v 373 (529)
T 3tpo_A 369 QIQQV 373 (529)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 55
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.44 E-value=0.44 Score=59.57 Aligned_cols=343 Identities=11% Similarity=-0.003 Sum_probs=180.8
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcc-hhH--HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhH
Q 001368 64 KCEDALYSLLILGARRPVRHLASVAMGRIISKGDNI-SVY--SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR 140 (1091)
Q Consensus 64 ~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~-~lf--dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~ 140 (1091)
.+...|.+++..+.-+.+|+..+++|..|-..-+.. .++ ..+..|.++|+ +.++..+..|+.+|+.+-......
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~---~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG---SPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCChhh
Confidence 456667777776667788999999999965432221 111 24566777775 335665558999999887653322
Q ss_pred Hhhc-HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCC----CchhHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 001368 141 ITSG-LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGS----AAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLK 215 (1091)
Q Consensus 141 l~s~-~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~----~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~ 215 (1091)
..-. -...+..+++++++.+..+|..++.+|+.+..+.... .+......+.+ ..| .+....++.++++++.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~-lL~---~~~~~~~~~~a~~aL~ 344 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN-IMR---TYTYEKLLWTTSRVLK 344 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHH-HHT---TCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHH-HHh---cCCHHHHHHHHHHHHH
Confidence 1111 1246778999999888888988888888665421000 00112333333 222 1233456667788888
Q ss_pred HHHhhcCCCcccchh--hhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhh
Q 001368 216 AFAHIGGPCLGVGEL--DNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLA 293 (1091)
Q Consensus 216 ~l~~~~~~~~~~~dl--E~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls 293 (1091)
.|.... .. ...+ ........+.+.+.+..++..++.+|+.+.... +. ....++++. .|.
T Consensus 345 ~Ls~~~--~~-~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~--~~-------------~~~~~~~i~-~Lv 405 (780)
T 2z6g_A 345 VLSVCS--SN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA--TK-------------QEGMEGLLG-TLV 405 (780)
T ss_dssp HHHTST--TH-HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC--TT-------------CSCCHHHHH-HHH
T ss_pred HhhcCh--HH-HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc--hh-------------hhhhhhHHH-HHH
Confidence 887642 11 1111 124566778888889999999999999887321 10 012244443 444
Q ss_pred hhhcccCCCCcchhHHHHHHHHHHHHHHhcc---ccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccC
Q 001368 294 LPFTRANGAKSKNMRVNLTLSWVYFLQAIRL---KYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQM 370 (1091)
Q Consensus 294 ~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~---~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~L 370 (1091)
... +. ...++|...+.+...+-..-.. ...+ ...+..+++++..+...+. .+.-....|+.... .-
T Consensus 406 ~lL-~~---~d~~vr~~A~~aL~~L~~~~~~~~~~i~~-----~g~i~~Lv~lL~~~~~~~~-v~~~Al~aL~nL~~-~~ 474 (780)
T 2z6g_A 406 QLL-GS---DDINVVTCAAGILSNLTCNNYKNKMMVCQ-----VGGIEALVRTVLRAGDRED-ITEPAICALRHLTS-RH 474 (780)
T ss_dssp HHT-TC---SCHHHHHHHHHHHHHHTSSCHHHHHHHHT-----TTHHHHHHHHHHHHTTCHH-HHHHHHHHHHHTTS-SS
T ss_pred HHH-cC---CCHHHHHHHHHHHHHHHhCCHHHHHHHHH-----CCCHHHHHHHHHccCCHHH-HHHHHHHHHHHHHh-cC
Confidence 332 22 3467776655555444211000 0000 1223345555553222112 22222223333322 11
Q ss_pred CcH--HHHH-----HHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCc-hhh-HHHHHHHHHHHhcCCchHHHHHHH
Q 001368 371 TEP--TQRS-----FLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVP-SEF-KEVLDSTVVAAVSHSSQLVRIEAA 441 (1091)
Q Consensus 371 gE~--~Q~~-----~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~-~~~-~~~l~d~l~~ll~hps~svRi~AA 441 (1091)
+|. .|.. .+..|++.+...+ .+.....+...++.|.. ++.. ..+ ..++...|+++|.+++..+|.+|+
T Consensus 475 ~~~~~~~~~v~~~~~l~~L~~lL~~~~-~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa 551 (780)
T 2z6g_A 475 QDAEMAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 551 (780)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHTTSTTC-CHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHcCCHHHHHHHhcCCC-hHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHh
Confidence 222 2322 2334444443222 22344466666666642 1110 112 235778999999999999999999
Q ss_pred HHHHH
Q 001368 442 LTLRA 446 (1091)
Q Consensus 442 ~cLr~ 446 (1091)
|++..
T Consensus 552 ~al~n 556 (780)
T 2z6g_A 552 MGGTQ 556 (780)
T ss_dssp -----
T ss_pred hcccc
Confidence 97654
No 56
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.43 E-value=1.8 Score=56.85 Aligned_cols=75 Identities=16% Similarity=0.086 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCC------------chHHHHHHHHHHHHHHHhCCcchhhHHHHHH
Q 001368 396 KIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHS------------SQLVRIEAALTLRALAEVDPTCVSGLITYGV 463 (1091)
Q Consensus 396 lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hp------------s~svRi~AA~cLr~~~~a~P~~~~~ll~~~~ 463 (1091)
...++.-++.+...+... +++-..+.+.++..+.++ +-.||-+|+.+|+.+|..+|..+.+.++...
T Consensus 549 ~~~~i~~l~~l~~~~~~~-p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~ 627 (1204)
T 3a6p_A 549 LSCVLTNVSALFPFVTYR-PEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLY 627 (1204)
T ss_dssp HHHHHHHHHHHGGGGGTC-GGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 335666666666655433 356667778888777662 3489999999999999999999999999888
Q ss_pred HHHHhhhh
Q 001368 464 TTLNALRE 471 (1091)
Q Consensus 464 ~~L~~~~~ 471 (1091)
+.+.....
T Consensus 628 ~~~~~~l~ 635 (1204)
T 3a6p_A 628 NHVKQLLS 635 (1204)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88876543
No 57
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.38 E-value=0.31 Score=57.65 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=74.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHH-HHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHhhcCCCcc
Q 001368 149 TIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAY-SEAFRLIMRFAIV-DKSFVVRIAGARCLKAFAHIGGPCLG 226 (1091)
Q Consensus 149 ~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~-~di~K~~~r~~~~-Dks~~Vr~aAa~cL~~l~~~~~~~~~ 226 (1091)
+.-+.+.++++....+.++.+.++|++..-.....+.+. ..+.....+ .+. +....||..|+.||..++..+ +- +
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~-lL~~~~~~~lq~~Aa~aL~nias~~-~e-~ 135 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS-FLGKTDCSPIQFESAWALTNIASGT-SE-Q 135 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHH-HTTCTTCHHHHHHHHHHHHHHHTSC-HH-H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHH-HHCCCCCHHHHHHHHHHHHHHhcCC-HH-H
Confidence 444778899988889999999999999754432211111 112221223 243 455789999999999998643 10 0
Q ss_pred cch-hh-hHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 001368 227 VGE-LD-NSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1091)
Q Consensus 227 ~~d-lE-~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa 261 (1091)
+.. .| ......++.+.+++..+|..++.+|+.+..
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 000 11 245677889999999999999999999873
No 58
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.38 E-value=3.6 Score=51.98 Aligned_cols=359 Identities=12% Similarity=0.034 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCc
Q 001368 124 AGAAQCLGELYRQFGRRITSGLLETTIIAAKLM-KFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDK 202 (1091)
Q Consensus 124 ~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~l-K~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dk 202 (1091)
.++..+|..++...|..+...+-+.+...+... .+.+-..|-+++.+++.+.+|+.... ......+.+. .-. +.+.
T Consensus 425 ~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-~~~l~~l~~~-l~~-l~~~ 501 (963)
T 2x19_B 425 VDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-SDVVPGLIGL-IPR-ISIS 501 (963)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-CSHHHHHHHH-GGG-SCCC
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-hHHHHHHHHH-HHh-CCCC
Confidence 467788888888888665443333333332211 23455678889999999999887544 2334455553 322 3444
Q ss_pred chHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCC
Q 001368 203 SFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAK 282 (1091)
Q Consensus 203 s~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k 282 (1091)
...||.+++.++..+...-. -+..-++.+...+++.+.+ +.||.+++.++..+.-. .... - ..
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~--~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~-~~~~--l----------~p 564 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLA--DHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRE-CKYD--L----------PP 564 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHH--HCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH-TGGG--C----------TT
T ss_pred cHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHH-HHHH--H----------Hh
Confidence 66799999999987765310 0224467788888888865 78999999999998833 2110 0 01
Q ss_pred ChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhc-------cCCCccH---
Q 001368 283 KLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLR-------ADIFVDS--- 352 (1091)
Q Consensus 283 ~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~-------~~~~~~~--- 352 (1091)
-+++.+. .|..-+.++. ..++.|..+.+|...++..++. + +...|+..++..+. ++. .+.
T Consensus 565 ~~~~il~-~l~~~l~~~~--~~~~~~~~~~eai~~i~~~~~~---~---~~~~~~~~l~~~l~~~l~~~~~~~-~~~~~~ 634 (963)
T 2x19_B 565 YAANIVA-VSQDVLMKQI--HKTSQCMWLMQALGFLLSALQV---E---EILKNLHSLISPYIQQLEKLAEEI-PNPSNK 634 (963)
T ss_dssp THHHHHH-HHHHHHHTTC--SCHHHHHHHHHHHHHHHTTSCH---H---HHHHHHHHHHHHHHHHHHHHHSSC-SCHHHH
T ss_pred hHHHHHH-HHHHHhccCC--CChHHHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHHHHHHHHHHHhCC-CCHHHH
Confidence 3455553 4433333332 4578999999999999887761 1 23456665554443 121 122
Q ss_pred ----HHHHHHHHHHHHhhhccCC------------------cHHH---HHHHHHHHhhcccCCCChhHHHHHHHHHHHHH
Q 001368 353 ----HALACVLYILRIGVTDQMT------------------EPTQ---RSFLVFLGKQLQAVDASPFMKIAALRTLSYTL 407 (1091)
Q Consensus 353 ----~~r~~v~~ILr~~i~~~Lg------------------E~~Q---~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll 407 (1091)
....|+..|.|.+-. ..+ ++.. ..+...+.+.++.-..+....-.+.+.++.++
T Consensus 635 ~~~~~~l~~l~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~ 713 (963)
T 2x19_B 635 LAIVHILGLLSNLFTTLDI-SHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSV 713 (963)
T ss_dssp HHHHHHHHHHHHHHHHCCS-SCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 123678777776532 221 1111 12222222222111112333447788999999
Q ss_pred HHhCCCchhhHHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHHH--hCCc----chhhHHHHHHHHHHhhhhhhccccCC
Q 001368 408 KTLGEVPSEFKEVLDSTVVAAVSH-SSQ-LVRIEAALTLRALAE--VDPT----CVSGLITYGVTTLNALRENVSFEKGS 479 (1091)
Q Consensus 408 ~~LGsa~~~~~~~l~d~l~~ll~h-ps~-svRi~AA~cLr~~~~--a~P~----~~~~ll~~~~~~L~~~~~~l~~~~~~ 479 (1091)
..+|+...++-..+.+.++....+ +.. .+++ +..++. .... .+.++++.+++++-.....
T Consensus 714 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l-----~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~------- 781 (963)
T 2x19_B 714 KTLLDDFAPMVPQLCEMLGRMYSTIPQASALDL-----TRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQ------- 781 (963)
T ss_dssp HHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HhhcccccccHHHHHHHHHHHHHcCCccHHHHH-----HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhh-------
Confidence 999998888777777776655543 222 2333 333333 2222 2333333333332211110
Q ss_pred cccchhhhhchHHHHHHHHHhhcCCCCCccCCch-hHHHHHHHHHHhhc
Q 001368 480 SLMVELDSLHGQATVVAALIFISPKLPLGYPARL-PKLVLEVSKKMLTE 527 (1091)
Q Consensus 480 ~~~~~~~~~~G~a~alAALl~~~~~~pLgvp~~~-~~~V~~~A~~LLk~ 527 (1091)
.....|+-...|=..+..++...+.. .++... ...++..+...++.
T Consensus 782 ~~~~~pd~~~~~f~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~l~~ 828 (963)
T 2x19_B 782 GPRDHPDIVDSFMQLLAQALKRKPDL--FLCERLDVKAVFQCAVLALKF 828 (963)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHCGGG--GGCTTSCHHHHHHHHHHHTTC
T ss_pred CcccCchHHHHHHHHHHHHHHhCcHH--HcCCcccHHHHHHHHHHHcCC
Confidence 00111343344444455555544422 233344 78899999999984
No 59
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.33 E-value=4 Score=51.98 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHhcCC-C--CCch----hHHHHHH
Q 001368 122 KVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMK---FNEEFVRQEALLLLQNALEGSG-G--SAAA----SAYSEAF 191 (1091)
Q Consensus 122 ~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK---~~~a~~R~~~l~~L~kil~g~g-~--~~~~----~~~~di~ 191 (1091)
.+.+|..+|..+-..+|+.+....-..+...+.... +.+-..|-+++.+++.+..+.. . +..+ --...++
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l 456 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH
Confidence 345899999999999997774333333333232221 2345689999999999987532 1 1110 0122333
Q ss_pred HHHHHHhccCc---chHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 001368 192 RLIMRFAIVDK---SFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1091)
Q Consensus 192 K~~~r~~~~Dk---s~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa 261 (1091)
....-..+.|. ...||.+||.|+..+... +....++.+...+++.+.+++..||.++|.+|..++-
T Consensus 457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~----~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ----LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG----SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHhcCCCCCCceehHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 22222235666 788999999999877654 2445688888999999999999999999999999874
No 60
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.28 E-value=1.2 Score=56.68 Aligned_cols=371 Identities=10% Similarity=-0.011 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhc-c
Q 001368 124 AGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF--NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAI-V 200 (1091)
Q Consensus 124 ~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~--~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~-~ 200 (1091)
.++..+|-.++..+|+.+....-+.+...+..... .+-..|-+++.+++++.+|+....+ .....+... +-... .
T Consensus 439 ~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-~~l~~l~~~-l~~l~~~ 516 (971)
T 2x1g_F 439 QDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-RQIPRLMRV-LAEIPYE 516 (971)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHHH-HHHSCTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-HHHHHHHHH-HHhcCcc
Confidence 36888898899888865544444333333322211 3446788999999999888775442 334455552 33222 2
Q ss_pred CcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCC
Q 001368 201 DKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPP 280 (1091)
Q Consensus 201 Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~ 280 (1091)
|....||..++.++..+...-.. +..-++.+...+++.++ +.|+.+++.++..+.-.+. .. -
T Consensus 517 d~~~~vr~~a~~~l~~~~~~l~~--~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~-~~------------l 578 (971)
T 2x1g_F 517 KLNVKLLGTALETMGSYCNWLME--NPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQ-LQ------------L 578 (971)
T ss_dssp TSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCH-HH------------H
T ss_pred ccCHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHH-Hh------------c
Confidence 66888999999999887764211 23447788888999993 7899999999999883211 00 0
Q ss_pred CCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHH----HHHHHhc---cCCCccH-
Q 001368 281 AKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYAL----QVMDMLR---ADIFVDS- 352 (1091)
Q Consensus 281 ~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~----~i~~ll~---~~~~~~~- 352 (1091)
..-+++.+. .|..-+.++. ..++.|..+..|.+.++..++. + +...|+. .++..+. ++...+.
T Consensus 579 ~p~~~~ll~-~l~~~l~~~~--~~~~~~~~~~~ai~~i~~~~~~---~---~~~~~~~~ll~~l~~~l~~~~~~~~~~~~ 649 (971)
T 2x1g_F 579 KPYADPLLN-ACHASLNTGR--MKNSDSVRLMFSIGKLMSLLRP---E---EIPKYLDIIVSPCFEELQAICQADSKTPA 649 (971)
T ss_dssp HHHHHHHHH-HHHHHHHSTT--SCHHHHHHHHHHHHHHHHTSCT---T---HHHHHHHHHHHHHHHHHHHHHTC---CHH
T ss_pred cccHHHHHH-HHHHHHcCCC--CChHHHHHHHHHHHHHHHhCCH---H---HHHHHHHHHHHHHHHHHHHHHhcCCCChh
Confidence 001233332 3333343432 4689999999999999987752 1 1233333 3333332 2221011
Q ss_pred ------HHHHHHHHHHHHhhhccCCcHH------------HHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCc
Q 001368 353 ------HALACVLYILRIGVTDQMTEPT------------QRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVP 414 (1091)
Q Consensus 353 ------~~r~~v~~ILr~~i~~~LgE~~------------Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~ 414 (1091)
....++..+++..- +..++.. ..+++..+.+.++....+....-.+...++.++..+|...
T Consensus 650 ~~~~~~~~l~~L~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~ 728 (971)
T 2x1g_F 650 ARIRTIFRLNMISTLFSSLN-TDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSF 728 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-C-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHHhhcC-CCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhc
Confidence 12356666666533 2332221 1122222222221111233344478889999999999988
Q ss_pred hhhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcc--hhhHHHHHHHHHHh-hhhhhccccCCcccchhhhhchH
Q 001368 415 SEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTC--VSGLITYGVTTLNA-LRENVSFEKGSSLMVELDSLHGQ 491 (1091)
Q Consensus 415 ~~~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~--~~~ll~~~~~~L~~-~~~~l~~~~~~~~~~~~~~~~G~ 491 (1091)
.+.-..+.+.++..+..+.. ..+-+.+..++...-.. ..+.+...+..+-. ...-+....++.....|+-...|
T Consensus 729 ~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~ 805 (971)
T 2x1g_F 729 QPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETF 805 (971)
T ss_dssp CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHH
Confidence 88777777888776665433 23556666666554331 22222222222111 11111100001112235555555
Q ss_pred HHHHHHHHhhcCCCCCccCCch-hHHHHHHHHHHhhccC
Q 001368 492 ATVVAALIFISPKLPLGYPARL-PKLVLEVSKKMLTESS 529 (1091)
Q Consensus 492 a~alAALl~~~~~~pLgvp~~~-~~~V~~~A~~LLk~~~ 529 (1091)
=..+..++...+. ..++... ...++.+|..-|+...
T Consensus 806 f~ll~~~l~~~p~--~~~~s~~~l~~i~~~~~~~l~~~~ 842 (971)
T 2x1g_F 806 FGCLTQIIKKIPQ--VLEDKTLAYDRLVFYAQRGMTLPE 842 (971)
T ss_dssp HHHHHHHHHSSGG--GGGCTTSCHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHhCcH--HHcCCcccHHHHHHHHHHHcCCCC
Confidence 5555555554442 2444455 6889999999888533
No 61
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.06 E-value=0.0023 Score=61.61 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=79.2
Q ss_pred HHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCch
Q 001368 105 VSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAA 184 (1091)
Q Consensus 105 vn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~ 184 (1091)
++.+...|+ +.++..+.+|+..||.+ |+. .+..+.+.++..+..+|..+..+|++ +| ++
T Consensus 14 ~~~l~~~L~---~~~~~vR~~A~~~L~~~----~~~-------~~~~L~~~L~d~~~~vR~~A~~aL~~----~~---~~ 72 (131)
T 1te4_A 14 LVPRGSHMA---DENKWVRRDVSTALSRM----GDE-------AFEPLLESLSNEDWRIRGAAAWIIGN----FQ---DE 72 (131)
T ss_dssp -------CC---SSCCCSSSSCCSSTTSC----SST-------THHHHHHGGGCSCHHHHHHHHHHHGG----GC---SH
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHh----Cch-------HHHHHHHHHcCCCHHHHHHHHHHHHh----cC---CH
Confidence 334445554 44565555677777743 322 24778899998889999999998877 44 23
Q ss_pred hHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHH
Q 001368 185 SAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGS 258 (1091)
Q Consensus 185 ~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~ 258 (1091)
.....+.+ ++.|.+..||.+|++.|..+.. +.....+.+.+++++..||.+++.+|+.
T Consensus 73 ~a~~~L~~-----~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 RAVEPLIK-----LLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHH-----HHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHH-----HHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 33444444 3679999999999999877642 2355667788899999999999998875
No 62
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.03 E-value=0.18 Score=63.91 Aligned_cols=168 Identities=20% Similarity=0.158 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhhcCCCchhhHHHHHHHHHHhh-cCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHH
Q 001368 63 RKCEDALYSLLILGARRPVRHLASVAMGRIIS-KGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRI 141 (1091)
Q Consensus 63 ~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~-~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l 141 (1091)
....+.|..+|.... +-+|...|-.|+.+|- .|+.. .+..+..++.+. .++.-++ +|+.+||-+| +|+.
T Consensus 471 eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~----ai~~LL~~~~e~-~~e~vrR-~aalgLGll~--~g~~- 540 (963)
T 4ady_A 471 IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPE----AIHDMFTYSQET-QHGNITR-GLAVGLALIN--YGRQ- 540 (963)
T ss_dssp HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHH----HHHHHHHHHHHC-SCHHHHH-HHHHHHHHHT--TTCG-
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHH----HHHHHHHHHhcc-CcHHHHH-HHHHHHHhhh--CCCh-
Confidence 345566666666443 3557888888888864 56654 334444444322 2234455 6778888774 3443
Q ss_pred hhcHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Q 001368 142 TSGLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHI 220 (1091)
Q Consensus 142 ~s~~~e~~~~llK~lK~-~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~ 220 (1091)
+.+..+++.++. .++.+|+.++.+++-...|.|+ ....+++.+. +.+|.+-.||.+|.-.|..+.-.
T Consensus 541 -----e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn---~~aIq~LL~~----~~~d~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 541 -----ELADDLITKMLASDESLLRYGGAFTIALAYAGTGN---NSAVKRLLHV----AVSDSNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp -----GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC---HHHHHHHHHH----HHHCSCHHHHHHHHHHHHHHTSS
T ss_pred -----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHH----hccCCcHHHHHHHHHHHHhhccC
Confidence 344445555554 5677788877777776666662 3344445443 44566666777776666554332
Q ss_pred cCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 221 GGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 221 ~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
. + |.+..+.-...++.|..||.+++-+||.+-
T Consensus 609 ~-~-------e~v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 609 D-Y-------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp S-C-------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred C-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 2 1 223333323344555666666666666543
No 63
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.96 E-value=2.2 Score=54.87 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=61.1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH--HhcCCchHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHh
Q 001368 391 ASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVA--AVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNA 468 (1091)
Q Consensus 391 ~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~--ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~~ 468 (1091)
+.+.+...++..++..-..+...+ +.-..+.+.++. -+.||+..||.+|+..++.||..++..+.+-++..+..+..
T Consensus 507 ~hp~V~~~~~~~l~rys~~~~~~~-~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~ 585 (980)
T 3ibv_A 507 PHPLVQLLYMEILVRYASFFDYES-AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGD 585 (980)
T ss_dssp CCHHHHHHHHHHHHHTGGGGGTCC-TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHH
Confidence 344444578888888777776544 455667777777 88899999999999999999999999999988887766654
Q ss_pred h
Q 001368 469 L 469 (1091)
Q Consensus 469 ~ 469 (1091)
.
T Consensus 586 l 586 (980)
T 3ibv_A 586 L 586 (980)
T ss_dssp G
T ss_pred h
Confidence 4
No 64
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.92 E-value=0.072 Score=54.38 Aligned_cols=181 Identities=20% Similarity=0.143 Sum_probs=110.9
Q ss_pred CCCchHHHHHHHHHHHhhccCChhhHHH-HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCc--chhH--HhHHH
Q 001368 33 SPDPLLCFDLLSDLISAIDEEPKESILL-WQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDN--ISVY--SRVSS 107 (1091)
Q Consensus 33 ~~~~~~~f~~L~~L~~~l~~~~k~di~~-~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~--~~lf--dtvn~ 107 (1091)
++++....+-+..|..... .+.+..+. .+....+.|.+++..+ .+.+|...+.+|..+-...+. ..++ +.+..
T Consensus 23 s~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 100 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPA 100 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHT-SCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHH
Confidence 4455555666666555432 22222211 1224567777777654 677899999999998643221 2222 25678
Q ss_pred HHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhh-cHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhH
Q 001368 108 LQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITS-GLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASA 186 (1091)
Q Consensus 108 l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s-~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~ 186 (1091)
+.++|+ +.++..+..|+.+|+.+-..-...... .-...+..+++.+++.+..+|..++.+|..++.+.......-.
T Consensus 101 L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~ 177 (210)
T 4db6_A 101 LVQLLS---SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK 177 (210)
T ss_dssp HHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHc---CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 888886 335665557888999886421111100 1234678889999988899999999999999874211110111
Q ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHh
Q 001368 187 YSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAH 219 (1091)
Q Consensus 187 ~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~ 219 (1091)
-..+.. .....+.|.+..||..|+.+|..|..
T Consensus 178 ~~g~i~-~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 178 EAGALE-KLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTTHHH-HHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HCCCHH-HHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 112333 23445778999999999999988754
No 65
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.91 E-value=0.11 Score=63.06 Aligned_cols=326 Identities=13% Similarity=0.141 Sum_probs=177.0
Q ss_pred CCcchhHHhHHHHHHhhhcCCCCCh-HhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 001368 96 GDNISVYSRVSSLQGFLSDGKKSEP-QKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNA 174 (1091)
Q Consensus 96 GD~~~lfdtvn~l~~iL~~~K~~sp-~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~ki 174 (1091)
|.+-+--|||++|.+-+..+ .-+ .+| +|+.-|-.+-+++-..+++..-......+|.-+.....+|+ ++.+|-.+
T Consensus 14 ~~~qs~~etI~~L~~Rl~~~--tl~eDRR-~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~-~LetL~~l 89 (651)
T 3grl_A 14 GPQHTEAETIQKLCDRVASS--TLLDDRR-NAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGY-ALDTLYNI 89 (651)
T ss_dssp ----CHHHHHHHHHHHHHHC--CSHHHHH-HHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHH-HHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHhhc--cchhHHH-HHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHH-HHHHHHHH
Confidence 44557788999999988722 123 356 79999988877777776655333333333333334566774 78888777
Q ss_pred HhcCCCCCc-----------hhHHHHHHHH------HHHHhccCcchHHHHHHHHHHHHHHhhcCCC-cccchhh--hHH
Q 001368 175 LEGSGGSAA-----------ASAYSEAFRL------IMRFAIVDKSFVVRIAGARCLKAFAHIGGPC-LGVGELD--NSA 234 (1091)
Q Consensus 175 l~g~g~~~~-----------~~~~~di~K~------~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~-~~~~dlE--~l~ 234 (1091)
+.+-+.... ..-..|++=+ ..=..+...++-||..+.+||..|..+. +- .+..=++ .=.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r-~~~~Q~~Il~~p~gi 168 (651)
T 3grl_A 90 ISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQL-GPQVQQIILVSPMGV 168 (651)
T ss_dssp HCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHSTTHH
T ss_pred hCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcC-cHHHHHHHHhCcccH
Confidence 765443210 0123344422 1222366799999999999999998764 21 1111111 123
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhh----hhhcccCCCCcchhHHH
Q 001368 235 THCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLA----LPFTRANGAKSKNMRVN 310 (1091)
Q Consensus 235 tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls----~~f~r~~~~~~r~~R~G 310 (1091)
+..+..++++...+|..+.-+|.++--....- .+...+|+++.+++. .+.++++ +-
T Consensus 169 ~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i------------QklVAFEnaFe~Lf~Ii~~Eg~~~Gg--------iv 228 (651)
T 3grl_A 169 SRLMDLLADSREVIRNDGVLLLQALTRSNGAI------------QKIVAFENAFERLLDIITEEGNSDGG--------IV 228 (651)
T ss_dssp HHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH------------HHHHHHTTHHHHHHHHHHHHTGGGSH--------HH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH------------HHHHHHhccHHHHHHHHHhcCCCccc--------hh
Confidence 45567889999999999999998877221110 022234555543332 2222221 33
Q ss_pred HHHHHHHHHHHhccccCCCCchhhHHHH------HHHHHhccC---CCccHHHH---HHHHHHHHHhhhccC----CcHH
Q 001368 311 LTLSWVYFLQAIRLKYFHPDSELQDYAL------QVMDMLRAD---IFVDSHAL---ACVLYILRIGVTDQM----TEPT 374 (1091)
Q Consensus 311 v~~ayv~fl~~lg~~~le~~~~~~~y~~------~i~~ll~~~---~~~~~~~r---~~v~~ILr~~i~~~L----gE~~ 374 (1091)
+-+|.+.+-..+..+ ...++|.. .+..++... ..++.... -++..|+|-.+.+-- ...-
T Consensus 229 v~DCL~ll~nLLr~N-----~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~n 303 (651)
T 3grl_A 229 VEDCLILLQNLLKNN-----NSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSC 303 (651)
T ss_dssp HHHHHHHHHHHHTTC-----HHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-----HHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 346666555555331 11133332 233333311 12222221 346666677775422 1223
Q ss_pred HHHH-----HHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchh--hH----------HHHHHHHHHHh-cCCchHH
Q 001368 375 QRSF-----LVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSE--FK----------EVLDSTVVAAV-SHSSQLV 436 (1091)
Q Consensus 375 Q~~~-----~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~--~~----------~~l~d~l~~ll-~hps~sv 436 (1091)
|..+ +..+++-.-+..........|+.+++.+++ |+...+ ++ -.+.+.|+..+ .++.+.+
T Consensus 304 Q~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ir--gN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~l 381 (651)
T 3grl_A 304 QKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIR--GCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVL 381 (651)
T ss_dssp HHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHH
Confidence 4433 344445333444455567789999999875 111110 10 11333344433 5778999
Q ss_pred HHHHHHHHHHHHHhCCc
Q 001368 437 RIEAALTLRALAEVDPT 453 (1091)
Q Consensus 437 Ri~AA~cLr~~~~a~P~ 453 (1091)
|++|+.|++||...++.
T Consensus 382 R~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 382 RCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCCHH
Confidence 99999999999988764
No 66
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.65 E-value=0.012 Score=66.89 Aligned_cols=184 Identities=15% Similarity=0.043 Sum_probs=91.0
Q ss_pred hhcccccCCcchhHHHHHHHHHHHhhcCCcccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchhhh
Q 001368 850 LGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQAT 929 (1091)
Q Consensus 850 l~~lv~~~dp~~Ra~~aLALG~I~r~vGgmas~~~l~t~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~st 929 (1091)
+.+.++.++|+.|-..+++...+|+...-+ .+..++-+..+.+|.+|.|++-|+.+|..+-+.. ...
T Consensus 144 lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~-----v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--------~~a 210 (355)
T 3tjz_B 144 MKQAIVDKVPSVSSSALVSSLHLLKCSFDV-----VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND--------RLA 210 (355)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTTTCHHH-----HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--------HHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhccCHHH-----HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--------hHH
Confidence 334467899999999999999998888765 4567778889999999999987776666655331 112
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHHHHHHhhCCCC-CC-chhhhHhhhc--cccCCCchhHHHHHhHHhhhcccCccc
Q 001368 930 LGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPEL-AP-GSIFFSRCKV--SAWQCSSPKWSVRFTQQLVLFAPQAVS 1005 (1091)
Q Consensus 930 L~ll~~lll~~~~~~~~~~~~igr~l~alI~~LGPeL-q~-~s~~~~~~~~--~~~~~~~~~eai~clQqL~lFAP~~v~ 1005 (1091)
+..+..-+... + ....-+.+.+++.+ ..+||+= .. ...+...... .+-.+.+.-|+++++=.+.-..++ .
T Consensus 211 ~~kLv~~l~~~--~-l~~~~~q~~llr~l-~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--~ 284 (355)
T 3tjz_B 211 VSKMISKFTRH--G-LKSPFAYCMMIRVA-SRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK--E 284 (355)
T ss_dssp HHHHHHHHHSS--C-CSCHHHHHHHHHHH-TCC-----------------CCCCCSSHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHhcC--C-CcChHHHHHHHHHH-HHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH--H
Confidence 22333333221 1 10122334455544 4577752 11 1223332211 122222346777776554332222 2
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccCchhhhh--hchHHHH
Q 001368 1006 VHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIE--ERIEGNL 1052 (1091)
Q Consensus 1006 ~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a~~v~~--~~le~~L 1052 (1091)
+...+..|+..|+|+.+.+|=+|+..|.++++++|..|.+ ..+|+.|
T Consensus 285 ~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li 333 (355)
T 3tjz_B 285 LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLV 333 (355)
T ss_dssp ---CCCTHHHHHHSSSSSSHHHHHHCC----------------------
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHc
Confidence 2334678888999999999999999999999999988864 3444443
No 67
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.55 E-value=1.7 Score=56.02 Aligned_cols=176 Identities=7% Similarity=-0.019 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHhhcCCcchhHHh-HHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhc-HHHHHHHHHHHhc--
Q 001368 82 RHLASVAMGRIISKGDNISVYSR-VSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSG-LLETTIIAAKLMK-- 157 (1091)
Q Consensus 82 R~l~a~cla~l~~~GD~~~lfdt-vn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~-~~e~~~~llK~lK-- 157 (1091)
|+.++.||-.++..+-. .++.. .+.+...+. +...+...+-||+.++|.+-+..+....+. .+..+..++.+..
T Consensus 430 ~~~~~~~L~~l~~~~~~-~~l~~v~~~l~~~l~-~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~ 507 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLNVI-DTEEIMISKLARQID-GSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKK 507 (1049)
T ss_dssp HHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHT-SSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHccCHH-HHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhh
Confidence 66788888888876532 22221 223344443 223345556699999998876655544333 5666666666432
Q ss_pred ---cCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcc-------c
Q 001368 158 ---FNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLG-------V 227 (1091)
Q Consensus 158 ---~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~-------~ 227 (1091)
.+++.+|..++.++++..+-... .+.....+....++ ++.|....||.+||.++..+....+..+. .
T Consensus 508 ~~~~~~~~v~~~~~~~lgry~~~~~~--~~~~l~~vl~~ll~-~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~ 584 (1049)
T 3m1i_C 508 RGKDNKAVVASDIMYVVGQYPRFLKA--HWNFLRTVILKLFE-FMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1049)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHH--CHHHHHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 24666776788888865433221 23455556554444 57888999999999999999887532221 1
Q ss_pred chhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 001368 228 GELDNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 228 ~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
.-++.+...+.+.++..+.+.+..+-+++|.++..
T Consensus 585 p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 585 PFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp CHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 33677888888888887777888899999998843
No 68
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.36 E-value=0.17 Score=56.13 Aligned_cols=172 Identities=15% Similarity=0.119 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHhhcCCcchhHH---hHHHHHH-hhhcCCCCChHhHHHHHHHHHHHHH---HHhhHHhhcHHHHHHHHHH
Q 001368 82 RHLASVAMGRIISKGDNISVYS---RVSSLQG-FLSDGKKSEPQKVAGAAQCLGELYR---QFGRRITSGLLETTIIAAK 154 (1091)
Q Consensus 82 R~l~a~cla~l~~~GD~~~lfd---tvn~l~~-iL~~~K~~sp~~~~aA~~cLG~l~~---~~G~~l~s~~~e~~~~llK 154 (1091)
|.....-|..+-.-.|...-|- .+..|.. +|+ ..++..+..|+.|||.+-. ..-+.+... ..+..+++
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~---s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~--g~l~~Ll~ 131 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQLSGMHLLVGRYLE---AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL--GALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT---CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC--CCHHHHHH
Confidence 4445555555555444444332 2344555 554 4456666689999998864 233333322 36677888
Q ss_pred HhccC-cHHHHHHHHHHHHHHHhcCCCCCchhHH-HHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc-ccchhh
Q 001368 155 LMKFN-EEFVRQEALLLLQNALEGSGGSAAASAY-SEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL-GVGELD 231 (1091)
Q Consensus 155 ~lK~~-~a~~R~~~l~~L~kil~g~g~~~~~~~~-~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~-~~~dlE 231 (1091)
++++. ...+|..++.+|..+++|-.... ..+. ...+.. .-..+.+.+..||..|+.++..+...+.... .--+ +
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~-~~~~~~ggi~~-L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~ 208 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGL-LQFLRLDGFSV-LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS-M 208 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHH-HHHHHTTHHHH-HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-T
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHH-HHHHHCCCHHH-HHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH-c
Confidence 88864 67899999999999998543211 1111 234553 3334677899999999999999987641111 0001 1
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 001368 232 NSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1091)
Q Consensus 232 ~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa 261 (1091)
......++.+.+++..+|..++++|+.++.
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 355566778899999999999999999983
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.03 E-value=0.21 Score=63.32 Aligned_cols=152 Identities=17% Similarity=0.074 Sum_probs=79.7
Q ss_pred chhhHHHHHHHHHHhhc-CCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhc
Q 001368 79 RPVRHLASVAMGRIISK-GDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMK 157 (1091)
Q Consensus 79 ~P~R~l~a~cla~l~~~-GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK 157 (1091)
+++|+-.+..|+-+|-. |+. . .++.|..+|. ++++..+.+|+..||-+|- |+.-.+++..++..+.
T Consensus 451 ~~ir~gAaLGLGla~~GS~~e-e---v~e~L~~~L~---dd~~~~~~~AalALGli~v------GTgn~~ai~~LL~~~~ 517 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSANI-E---VYEALKEVLY---NDSATSGEAAALGMGLCML------GTGKPEAIHDMFTYSQ 517 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCCH-H---HHHHHHHHHH---TCCHHHHHHHHHHHHHHHT------TCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCH-H---HHHHHHHHHh---cCCHHHHHHHHHHHhhhhc------ccCCHHHHHHHHHHHh
Confidence 45677777777776643 222 2 3346666665 3333333356666665543 5555666666666554
Q ss_pred c-CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHH
Q 001368 158 F-NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATH 236 (1091)
Q Consensus 158 ~-~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl 236 (1091)
. .+..+|..+..+|+.+.-|-. ...-.+.+. + ..|....||.+++-++.--+-.+ ++-+.+..+
T Consensus 518 e~~~e~vrR~aalgLGll~~g~~-----e~~~~li~~-L---~~~~dp~vRygaa~alglAyaGT------Gn~~aIq~L 582 (963)
T 4ady_A 518 ETQHGNITRGLAVGLALINYGRQ-----ELADDLITK-M---LASDESLLRYGGAFTIALAYAGT------GNNSAVKRL 582 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTCG-----GGGHHHHHH-H---HHCSCHHHHHHHHHHHHHHTTTS------CCHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHhhhCCCh-----HHHHHHHHH-H---HhCCCHHHHHHHHHHHHHHhcCC------CCHHHHHHH
Confidence 3 345566666666666533222 122333332 1 23566667777665443222221 333444444
Q ss_pred HHHhccCCChhHHHHHHHHHHH
Q 001368 237 CVKAIEDPIASVRDAFAEALGS 258 (1091)
Q Consensus 237 ~~K~le~s~~~vR~a~A~~Lg~ 258 (1091)
.-...++.+..||++++-.||-
T Consensus 583 L~~~~~d~~d~VRraAViaLGl 604 (963)
T 4ady_A 583 LHVAVSDSNDDVRRAAVIALGF 604 (963)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHhccCCcHHHHHHHHHHHHh
Confidence 4444556666777777777774
No 70
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.12 E-value=14 Score=47.60 Aligned_cols=377 Identities=10% Similarity=0.015 Sum_probs=190.4
Q ss_pred HHHHHHHHHHhhcC---C-----CchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHH
Q 001368 63 RKCEDALYSLLILG---A-----RRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELY 134 (1091)
Q Consensus 63 ~~l~~~L~~~l~~~---~-----g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~ 134 (1091)
..+++.|++.+... | .+.+|+=++.+++.++...=+..==+-+.++...++ .++.....++..|..+.
T Consensus 90 ~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~----~~~~~~~~~L~iL~~L~ 165 (1023)
T 4hat_C 90 IGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----SSVNVCENNMIVLKLLS 165 (1023)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT----TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc----CCHHHHHHHHHHHHHHH
Confidence 34666666666542 2 244578899999999998522111122234555443 23443446778888877
Q ss_pred HHHhh----------------HHhhcHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHH
Q 001368 135 RQFGR----------------RITSGLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSA--AASAYSEAFRLIM 195 (1091)
Q Consensus 135 ~~~G~----------------~l~s~~~e~~~~llK~lK~-~~a~~R~~~l~~L~kil~g~g~~~--~~~~~~di~K~~~ 195 (1091)
|..++ .+...++.++..+.+.+.. .++.+...+++++.+-++=+--+. .+....-++
T Consensus 166 EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~---- 241 (1023)
T 4hat_C 166 EEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLS---- 241 (1023)
T ss_dssp HHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHH----
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHH----
Confidence 77543 2355577777777777765 356677788888888776433111 122333333
Q ss_pred HHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhh--------hHHHHH--------------HHhccCCChhHHHHHH
Q 001368 196 RFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELD--------NSATHC--------------VKAIEDPIASVRDAFA 253 (1091)
Q Consensus 196 r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE--------~l~tl~--------------~K~le~s~~~vR~a~A 253 (1091)
...++ +...|.+|++||.+++....+ -...++| .+.... ++.-++.+.+....++
T Consensus 242 ~~~L~--~~~~r~~A~ecL~eIv~~~~~-~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~ 318 (1023)
T 4hat_C 242 TKFMT--SPDTRAITLKCLTEVSNLKIP-QDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLA 318 (1023)
T ss_dssp THHHH--SHHHHHHHHHHHHHHHTSCCC-SSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHH
T ss_pred HHHcC--CHHHHHHHHHHHHHHHccccC-CchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHH
Confidence 11233 345899999999999873211 0001244 111111 1111234567777888
Q ss_pred HHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHH---HHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCC
Q 001368 254 EALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQ---RHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPD 330 (1091)
Q Consensus 254 ~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~---~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~ 330 (1091)
+.+.+++-.... -- .+ .+ .+.+.+. .+|-. .++..-+++=--+.+.|-.|...+-..=. +.
T Consensus 319 ~l~~~~~e~~~~-li-~~----~~-----~~~~~l~~~l~~Ll~----~~~~~d~ei~~~tl~FW~~L~~~l~~e~~-~~ 382 (1023)
T 4hat_C 319 MFLTTYLARNRA-LL-ES----DE-----SLRELLLNAHQYLIQ----LSKIEERELFKTTLDYWHNLVADLFYEPL-KK 382 (1023)
T ss_dssp HHHHHHHHHHGG-GG-TS----CG-----GGHHHHHHHHHHHHH----HTTSSCHHHHHHHHHHHHHHHHHHTTSTT-TG
T ss_pred HHHHHHHHHHHH-HH-hC----Cc-----chhHHHHHHHHHHHH----hhCCCcHHHHHHHHHHHHHHHHHHHhchH-HH
Confidence 888887743332 10 00 00 1122221 12211 11112355533456677777765422100 10
Q ss_pred chhhHHHHHHHHHhc----cCCC----------c------cHHHHHHHHHHHHHhhh---ccCCcHHHHHHHHHHHhhcc
Q 001368 331 SELQDYALQVMDMLR----ADIF----------V------DSHALACVLYILRIGVT---DQMTEPTQRSFLVFLGKQLQ 387 (1091)
Q Consensus 331 ~~~~~y~~~i~~ll~----~~~~----------~------~~~~r~~v~~ILr~~i~---~~LgE~~Q~~~~~~l~~~~~ 387 (1091)
.....+..+++..+- -+.. + |.-.+.... .+|+++. .++++.-...+...+.+.+.
T Consensus 383 ~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~-~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~ 461 (1023)
T 4hat_C 383 HIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYK-SEREVLVYLTHLNVIDTEEIMISKLARQID 461 (1023)
T ss_dssp GGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHH-HHHHHHHHHHHHCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHH-HHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 112333334444333 1220 0 111111111 1144442 23343322334444444443
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHH---HhCCcchhhH
Q 001368 388 AVDASPFMKIAALRTLSYTLKTLGEV-PSEFKEVLDSTVVAAVSH-----SSQLVRIEAALTLRALA---EVDPTCVSGL 458 (1091)
Q Consensus 388 ~~~~s~~~lv~aL~el~~Ll~~LGsa-~~~~~~~l~d~l~~ll~h-----ps~svRi~AA~cLr~~~---~a~P~~~~~l 458 (1091)
..+++=+..=.++-++|++....... -.++-..+...|+.++.| |..-||-.++|++-.++ ...|.++.++
T Consensus 462 ~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~v 541 (1023)
T 4hat_C 462 GSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTV 541 (1023)
T ss_dssp STTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33333222336666666655433221 123344566678888876 66667777889996544 4578888888
Q ss_pred HHHHHHHHH
Q 001368 459 ITYGVTTLN 467 (1091)
Q Consensus 459 l~~~~~~L~ 467 (1091)
+..+++.|.
T Consensus 542 l~~L~~~l~ 550 (1023)
T 4hat_C 542 ILKLFEFMH 550 (1023)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 888877773
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=94.02 E-value=3.2 Score=48.65 Aligned_cols=340 Identities=12% Similarity=0.061 Sum_probs=170.4
Q ss_pred HHhhcCCCchhhHHHHH-----HHHHHhhc------------CCcchhHHhHHHHHHhhhcCCCCC-hHhHHHHHHHHHH
Q 001368 71 SLLILGARRPVRHLASV-----AMGRIISK------------GDNISVYSRVSSLQGFLSDGKKSE-PQKVAGAAQCLGE 132 (1091)
Q Consensus 71 ~~l~~~~g~P~R~l~a~-----cla~l~~~------------GD~~~lfdtvn~l~~iL~~~K~~s-p~~~~aA~~cLG~ 132 (1091)
+++.....||+|..+.+ .|+.+.+. ||+...|+....|.+|..+..|.. ..+...++.+|-.
T Consensus 52 ~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~ 131 (458)
T 3nmz_A 52 TLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQ 131 (458)
T ss_dssp HHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHH
Confidence 34455556667666655 35555554 677999999999999998433322 2233445555542
Q ss_pred HHHHHhhHHhhcHHHHHHHHHHHhccCc-----H--HHH-------HHHHHHHHHHHhcCCCCCchhHHHHHHHH-----
Q 001368 133 LYRQFGRRITSGLLETTIIAAKLMKFNE-----E--FVR-------QEALLLLQNALEGSGGSAAASAYSEAFRL----- 193 (1091)
Q Consensus 133 l~~~~G~~l~s~~~e~~~~llK~lK~~~-----a--~~R-------~~~l~~L~kil~g~g~~~~~~~~~di~K~----- 193 (1091)
+ ...+..+++++.+.. . .+| +.+..+|.++ + .++. +||..-.
T Consensus 132 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nl----s--~~~e-~R~~i~~~G~l~ 192 (458)
T 3nmz_A 132 I------------RAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL----S--FDEE-HRHAMNELGGLQ 192 (458)
T ss_dssp H------------HHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHH----T--TSHH-HHHHHHHTTHHH
T ss_pred h------------hhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHh----c--CCHH-HHHHHHHCCCHH
Confidence 2 222333556665431 0 033 3666666664 1 1121 3332211
Q ss_pred -HHHHh---------ccC-cchHHHHHHHHHHHHHHhhcCCCcccchh---hhHHHHHHHhccCCChhHHHHHHHHHHHH
Q 001368 194 -IMRFA---------IVD-KSFVVRIAGARCLKAFAHIGGPCLGVGEL---DNSATHCVKAIEDPIASVRDAFAEALGSL 259 (1091)
Q Consensus 194 -~~r~~---------~~D-ks~~Vr~aAa~cL~~l~~~~~~~~~~~dl---E~l~tl~~K~le~s~~~vR~a~A~~Lg~l 259 (1091)
..+.. ..| .+..++..|+.+|..|...+ . -+...+ .......++.+.+.+.+++..++.+|+.+
T Consensus 193 ~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~-~-~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nL 270 (458)
T 3nmz_A 193 AIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD-V-ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 270 (458)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC-H-HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC-c-ccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 11110 012 45678999999999998754 1 011112 23466777888899999999999999997
Q ss_pred HHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHh---ccccCCCCchhhHH
Q 001368 260 LALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAI---RLKYFHPDSELQDY 336 (1091)
Q Consensus 260 La~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~l---g~~~le~~~~~~~y 336 (1091)
-.. -.+. .| ....-.+++. .|..-..+. .+.+++...+.+...+-..- ...... ...-
T Consensus 271 s~~-~~~~------~k----~~I~~~GaI~-~LV~lLl~s---~~~~v~~~A~~aL~nLs~~~~~nk~~I~~----~~Ga 331 (458)
T 3nmz_A 271 SWR-ADVN------SK----KTLREVGSVK-ALMECALEV---KKESTLKSVLSALWNLSAHCTENKADICA----VDGA 331 (458)
T ss_dssp TSS-CCHH------HH----HHHHHTTHHH-HHHHHHTTC---CSHHHHHHHHHHHHHHHHHCHHHHHHHHH----STTH
T ss_pred hcC-CCHH------HH----HHHHHcCCHH-HHHHHHhcC---CCHHHHHHHHHHHHHHccCCHHHHHHHHH----hcCc
Confidence 421 0000 00 0000012332 333322232 22344443333332222211 000000 0123
Q ss_pred HHHHHHHhccCCCccH-HHHHHHHHHHHHhhhccCCcHHHHH------HHHHHHhhcccCCCChhHHHHHHHHHHHHHHH
Q 001368 337 ALQVMDMLRADIFVDS-HALACVLYILRIGVTDQMTEPTQRS------FLVFLGKQLQAVDASPFMKIAALRTLSYTLKT 409 (1091)
Q Consensus 337 ~~~i~~ll~~~~~~~~-~~r~~v~~ILr~~i~~~LgE~~Q~~------~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~ 409 (1091)
+..+++++......+. ..++-...+||..-.-.-+...+++ ++..+++.+.+ .+.....-|..+++.|..
T Consensus 332 l~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~--~~~~v~~~A~~aL~nLa~- 408 (458)
T 3nmz_A 332 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS--HSLTIVSNACGTLWNLSA- 408 (458)
T ss_dssp HHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC--SCHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC--CChHHHHHHHHHHHHHHc-
Confidence 3345666654332111 1222222233332210112223322 23445554433 333344456666666632
Q ss_pred hCCCch--h-hHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcc
Q 001368 410 LGEVPS--E-FKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTC 454 (1091)
Q Consensus 410 LGsa~~--~-~~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~ 454 (1091)
|+... . ...+..++|+.+|.+++..+|-.|+|+|+.++...|..
T Consensus 409 -~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 409 -RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp -SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC
T ss_pred -CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhh
Confidence 22111 1 24567889999999999999999999999999888763
No 72
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=93.94 E-value=1.8 Score=46.31 Aligned_cols=146 Identities=12% Similarity=0.026 Sum_probs=117.5
Q ss_pred hHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHH-hhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCC
Q 001368 104 RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQF-GRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSA 182 (1091)
Q Consensus 104 tvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~-G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~ 182 (1091)
-++.+..+|. ++++..+..|+..|+++.+.+ |.+=.....+.+-.+.+++|.....+=-.++++++-+++|.- .
T Consensus 34 ~l~~L~~LL~---dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp--L 108 (265)
T 3b2a_A 34 ALFLILELAG---EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP--M 108 (265)
T ss_dssp HHHHHHHHTT---SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC--B
T ss_pred HHHHHHHHHh---ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC--C
Confidence 3446666775 445665568999999999997 666666788999999999999877777789999999999765 6
Q ss_pred chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 001368 183 AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 183 ~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
++..+.++-+ ++.+-..++.-..+.=|++.+.-+ +-+ +....+.++.+.-+++.|.++..+.=++|-++...
T Consensus 109 ~~~~y~Kl~~-aL~dlik~~~~il~~eaae~Lgkl-kv~------~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 109 GSKTFLKAAK-TLVSLLESPDDMMRIETIDVLSKL-QPL------EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp CHHHHHHHHH-HHHHHTTSCCHHHHHHHHHHHHHC-CBS------CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHH-HHHHHhcCCCchHHHHHHHHhCcC-Ccc------cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 7788999999 588888899999999999999877 322 33456888888899999999988887777776644
No 73
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.89 E-value=0.73 Score=49.80 Aligned_cols=181 Identities=13% Similarity=0.145 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHHHHHhhHH-----hhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCc-----hhHHHHHH
Q 001368 122 KVAGAAQCLGELYRQFGRRI-----TSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAA-----ASAYSEAF 191 (1091)
Q Consensus 122 ~~~aA~~cLG~l~~~~G~~l-----~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~-----~~~~~di~ 191 (1091)
.|..|+.-|..+++...+.. ...+......+-|.++.++..+...++.++..++.++|.... ......+.
T Consensus 25 ~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l 104 (278)
T 4ffb_C 25 ARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWT 104 (278)
T ss_dssp HHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHH
Confidence 33468887777776544332 223555566777888888999999999999999998885431 11222333
Q ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCC
Q 001368 192 RLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQ 271 (1091)
Q Consensus 192 K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~ 271 (1091)
-....=+++|.-..+|..|.+|+..++... ...+.+...+..++++-|+.+|.+....|..++-. +.++.
T Consensus 105 ~~lveK~l~~~k~~~~~~a~~~l~~~~~~~------~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~-fg~~~--- 174 (278)
T 4ffb_C 105 PLLVEKGLTSSRATTKTQSMSCILSLCGLD------TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA-FGLTN--- 174 (278)
T ss_dssp HHHHHHTSSCCCHHHHHHHHHHHHHHHHTS------SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH-HTTTT---
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHhc------CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-hCCCc---
Confidence 322322578888899999999998888654 22355778888999999999999999999999854 22110
Q ss_pred CCCCCCCCCCCC-hHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhcc
Q 001368 272 PKGKGPFPPAKK-LEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRL 324 (1091)
Q Consensus 272 ~~~k~~~~~~k~-~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~ 324 (1091)
. ..+. ++..+ +.+...+-. ...+||-+-..+++.+.+.+|.
T Consensus 175 ------~-~~k~~l~~i~-~~l~k~l~d----~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 175 ------V-NVQTFLPELL-KHVPQLAGH----GDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp ------C-CHHHHHHHHG-GGHHHHHTC----SSHHHHHHHHHHHHHHHTC---
T ss_pred ------C-CchhHHHHHH-HHHHHHHhC----CcHHHHHHHHHHHHHHHHHhCc
Confidence 0 0001 11222 233333322 4699999999999999888885
No 74
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=93.85 E-value=10 Score=48.69 Aligned_cols=86 Identities=21% Similarity=0.143 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhC-C-cchhhHHHHHHHHHHh--hhhhhccccCCcccchhhhhch
Q 001368 416 EFKEVLDSTVVAAVSHSS-QLVRIEAALTLRALAEVD-P-TCVSGLITYGVTTLNA--LRENVSFEKGSSLMVELDSLHG 490 (1091)
Q Consensus 416 ~~~~~l~d~l~~ll~hps-~svRi~AA~cLr~~~~a~-P-~~~~~ll~~~~~~L~~--~~~~l~~~~~~~~~~~~~~~~G 490 (1091)
.-.+.+.+.++++|.|+. .-||-.||.||--+..-. | .....++....++..+ ....+ .+. ......+.||
T Consensus 839 ~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~--~~~--~~~~~~~rH~ 914 (997)
T 1vsy_5 839 EEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKE--RQK--LSKTDIKIHG 914 (997)
T ss_dssp THHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHH--HHH--HHHHCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhccccccc--ccc--cchHHHHHHH
Confidence 445679999999999999 999999999998887665 5 4444455433332211 00000 000 0111256799
Q ss_pred HHHHHHHHHhhcCCC
Q 001368 491 QATVVAALIFISPKL 505 (1091)
Q Consensus 491 ~a~alAALl~~~~~~ 505 (1091)
--+||+|++.+.|..
T Consensus 915 aVLgL~AlV~a~Py~ 929 (997)
T 1vsy_5 915 NVLGLGAIISAFPYV 929 (997)
T ss_dssp HHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHhhCCCC
Confidence 999999999998854
No 75
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=93.36 E-value=10 Score=43.88 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=70.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcc
Q 001368 148 TTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAA-ASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLG 226 (1091)
Q Consensus 148 ~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~-~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~ 226 (1091)
++..+.+.+++.+...+..+..+|.++..+-. ... .-+.........+ .+.+.+..||..|+.+|..|...+ +- +
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~-lL~s~~~~~~~~A~~aL~nLa~~~-~~-~ 78 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVD-LLRSPNQNVQQAAAGALRNLVFRS-TT-N 78 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCS-SHHHHHHHTTHHHHHHH-HTTSSCHHHHHHHHHHHHHHHSSC-HH-H
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhcCC-HH-H
Confidence 34567888888888899999999999764221 111 1111112221222 356678899999999999998752 10 0
Q ss_pred cchh-h-hHHHHHHHhcc-CCChhHHHHHHHHHHHHHHh
Q 001368 227 VGEL-D-NSATHCVKAIE-DPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 227 ~~dl-E-~l~tl~~K~le-~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
...+ | ......++.+. +.+.+++..++.+|+.+...
T Consensus 79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Confidence 0001 1 12345667777 77899999999999998743
No 76
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.70 E-value=3.9 Score=44.55 Aligned_cols=152 Identities=11% Similarity=-0.012 Sum_probs=99.0
Q ss_pred CcchhHHhHHHHHHhhh-cCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHH----HHHHHHHHHhccCcHHHHHHHHHHH
Q 001368 97 DNISVYSRVSSLQGFLS-DGKKSEPQKVAGAAQCLGELYRQFGRRITSGLL----ETTIIAAKLMKFNEEFVRQEALLLL 171 (1091)
Q Consensus 97 D~~~lfdtvn~l~~iL~-~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~----e~~~~llK~lK~~~a~~R~~~l~~L 171 (1091)
++..++..++.+..++. .-.++.++....++..|..++..+++.=....+ -.+..++-=+--+...+|..+-..+
T Consensus 77 ~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il 156 (266)
T 2of3_A 77 SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIV 156 (266)
T ss_dssp CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 34455666666666654 122445655557888888888888774111222 2223322222235677888877777
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHH---HHHHHhccCCChhH
Q 001368 172 QNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSA---THCVKAIEDPIASV 248 (1091)
Q Consensus 172 ~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~---tl~~K~le~s~~~v 248 (1091)
..+.. +- -...++..++. ++..|+.-+|..++.++..+....|.. ..... ..+.|.++++|..|
T Consensus 157 ~~l~~-v~------~~~~v~~~l~~-g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~V 223 (266)
T 2of3_A 157 NVLSD-VV------GPLKMTPMLLD-ALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNV 223 (266)
T ss_dssp HHHHH-HH------CHHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHH
T ss_pred HHHHH-HC------CHHHHHHHHHH-HHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCCHHH
Confidence 55543 21 23456665444 788899999999999999998875443 12233 55779999999999
Q ss_pred HHHHHHHHHHHHH
Q 001368 249 RDAFAEALGSLLA 261 (1091)
Q Consensus 249 R~a~A~~Lg~lLa 261 (1091)
|.++-.|+.++-.
T Consensus 224 R~aAl~~lve~y~ 236 (266)
T 2of3_A 224 RNAAINVLVACFK 236 (266)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=92.21 E-value=5.7 Score=42.55 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=137.8
Q ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCC
Q 001368 144 GLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGP 223 (1091)
Q Consensus 144 ~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~ 223 (1091)
..++.+.++.+++....+.++.-++.+++++++.+.+..+.-..++++-.+.+- +.++.--|-.-|.+||..+... .
T Consensus 30 ~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~l-lk~~dEkval~A~r~L~~LLe~--v 106 (265)
T 3b2a_A 30 EDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINA-LSQENEKVTIKALRALGYLVKD--V 106 (265)
T ss_dssp HCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-CCSTTHHHHHHHHHHHHHHHTT--C
T ss_pred hchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHcC--C
Confidence 456788999999988888999999999999999987666555666666655554 4677778888899999999986 3
Q ss_pred CcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCC
Q 001368 224 CLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAK 303 (1091)
Q Consensus 224 ~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~ 303 (1091)
-++.++|+.+.....-.+.+.|.-.|..+|+.+|-+ .+. ... ..++. ++.+-- ++ .
T Consensus 107 pL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-----kv~-----------~~~---~~V~~-~l~sLl-~S---k 162 (265)
T 3b2a_A 107 PMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-----QPL-----------EDS---KLVRT-YINELV-VS---P 162 (265)
T ss_dssp CBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-----CBS-----------CCC---HHHHH-HHHHHH-TC---S
T ss_pred CCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-----Ccc-----------cch---HHHHH-HHHHHH-hC---C
Confidence 578899999999999999999999999999999987 111 011 23332 444333 22 5
Q ss_pred cchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccCCCccHHHHHHHHHHHHHhhhccCCcHHH
Q 001368 304 SKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQ 375 (1091)
Q Consensus 304 ~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q 375 (1091)
.+++++. +...|...-+.+ ++-....++...|-+++.+. |++.+..+..+|...+...+.|.--
T Consensus 163 d~~vK~a---gl~~L~eia~~S--~D~~i~~~I~~eI~elL~~e---D~~l~e~aLd~Le~ils~pi~~~~~ 226 (265)
T 3b2a_A 163 DLYTKVA---GFCLFLNMLNSS--ADSGHLTLILDEIPSLLQND---NEFIVELALDVLEKALSFPLLENVK 226 (265)
T ss_dssp SHHHHHH---HHHHHHHHGGGC--SSCCCGGGTTTTHHHHHTCS---CHHHHHHHHHHHHHHTTSCCCSCCH
T ss_pred ChhHHHH---HHHHHHHhhccc--CCHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCcccHhHH
Confidence 6777752 222333333321 11112367777888888654 7888777777777778655555443
No 78
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=92.00 E-value=3.1 Score=47.21 Aligned_cols=159 Identities=13% Similarity=0.071 Sum_probs=100.1
Q ss_pred HHhhcCCCchh--hHHHHHHHHHHhhcCCcchhHHhHHHHHHhhh--cCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHH
Q 001368 71 SLLILGARRPV--RHLASVAMGRIISKGDNISVYSRVSSLQGFLS--DGKKSEPQKVAGAAQCLGELYRQFGRRITSGLL 146 (1091)
Q Consensus 71 ~~l~~~~g~P~--R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~--~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~ 146 (1091)
+..+.+|--|. |+.+.+.+ .+...|+.++=-+...-.-++++ ..+|. .-|+. . +---..|... -...-
T Consensus 32 r~fn~~~~~~~kc~~~l~kll-~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~-~lKrL-v-YLyl~~~~~~----~~e~i 103 (355)
T 3tjz_B 32 RVFNETPINPRKCAHILTKIL-YLINQGEHLGTTEATEAFFAMTKLFQSNDP-TLRRM-C-YLTIKEMSCI----AEDVI 103 (355)
T ss_dssp GGTTSSSCCHHHHHHHHHHHH-HHHHHTCCCCHHHHHHHHHHHHGGGGCCCH-HHHHH-H-HHHHHHHTTT----SSCGG
T ss_pred HHhcCCCCcHHHHHHHHHHHH-HHHHCCCCCchhHHHHHHHHHHHHhcCCCH-HHHHH-H-HHHHHHhCCC----HHHHH
Confidence 45566666565 44566654 46666788653333333334443 23332 23441 1 1111223222 12233
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcc
Q 001368 147 ETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLG 226 (1091)
Q Consensus 147 e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~ 226 (1091)
.+++.+.|=+...++.+|.-++++|.+|. ++.+..++.. -+|.++.||...||.+|+=|...|+... |
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~-------~~~m~~~l~~-~lk~~L~d~~pyVRk~A~l~~~kL~~~~-p--- 171 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQIT-------DSTMLQAIER-YMKQAIVDKVPSVSSSALVSSLHLLKCS-F--- 171 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHC-------CTTTHHHHHH-HHHHHHTCSSHHHHHHHHHHHHHHTTTC-H---
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCC-------CHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHhccC-H---
Confidence 67888888888878899999999999973 3567888888 4888999999999999999988887764 2
Q ss_pred cchhhhHHHHHHHhccCCChhHHH
Q 001368 227 VGELDNSATHCVKAIEDPIASVRD 250 (1091)
Q Consensus 227 ~~dlE~l~tl~~K~le~s~~~vR~ 250 (1091)
.-.+.+..-.-..+.+.|+-|--
T Consensus 172 -e~v~~~~~~l~~ll~d~n~~V~~ 194 (355)
T 3tjz_B 172 -DVVKRWVNEAQEAASSDNIMVQY 194 (355)
T ss_dssp -HHHHTTHHHHHHHTTCSSHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCCccHHH
Confidence 11234444555567778876653
No 79
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=91.72 E-value=0.7 Score=43.93 Aligned_cols=114 Identities=21% Similarity=0.168 Sum_probs=79.1
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHH
Q 001368 68 ALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLE 147 (1091)
Q Consensus 68 ~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e 147 (1091)
.|.+.+. .+.+.+|...+++|+.+ |+. .+..|...|+ +.+|..+..|+..||.+- -++
T Consensus 16 ~l~~~L~-~~~~~vR~~A~~~L~~~---~~~-----~~~~L~~~L~---d~~~~vR~~A~~aL~~~~----------~~~ 73 (131)
T 1te4_A 16 PRGSHMA-DENKWVRRDVSTALSRM---GDE-----AFEPLLESLS---NEDWRIRGAAAWIIGNFQ----------DER 73 (131)
T ss_dssp -----CC-SSCCCSSSSCCSSTTSC---SST-----THHHHHHGGG---CSCHHHHHHHHHHHGGGC----------SHH
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHh---Cch-----HHHHHHHHHc---CCCHHHHHHHHHHHHhcC----------CHH
Confidence 3444443 45677788888777754 555 2568888886 567877778888888542 146
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 001368 148 TTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLK 215 (1091)
Q Consensus 148 ~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~ 215 (1091)
.+..+.+.++..+..+|..+..+|.++ | ++.....+.+ .+.|.+..||.+|++.|.
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~----~---~~~a~~~L~~-----~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQI----G---GERVRAAMEK-----LAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHH----C---SHHHHHHHHH-----HTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh----C---cHHHHHHHHH-----HHhCCCHHHHHHHHHHHH
Confidence 788888999888899999999999984 4 2333333333 467999999999998874
No 80
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=91.46 E-value=0.22 Score=55.16 Aligned_cols=65 Identities=11% Similarity=0.019 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHHhCCcchhhHH
Q 001368 395 MKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVA-AVSHSSQLVRIEAALTLRALAEVDPTCVSGLI 459 (1091)
Q Consensus 395 ~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~-ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll 459 (1091)
.-..||..+..|+..+..+..-...+...+++. +|.||+..||-+|+|||..++...|.+-..++
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv 121 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVL 121 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 456788888888886654333233355678999 99999999999999999999998887654444
No 81
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.98 E-value=1.6 Score=47.66 Aligned_cols=93 Identities=11% Similarity=0.063 Sum_probs=72.8
Q ss_pred CCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHH---HHHH
Q 001368 77 ARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETT---IIAA 153 (1091)
Q Consensus 77 ~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~---~~ll 153 (1091)
+-.++|..+-.++..++...-+..+|+.+ .+-++ .++++.+...+.+++.+++.+|-.- + -.+ ..+.
T Consensus 144 ~k~~vR~~~r~il~~l~~v~~~~~v~~~l---~~g~k---sKN~R~R~e~l~~l~~li~~~G~~~-~---~~l~~~~~ia 213 (266)
T 2of3_A 144 AKDNMRTSVRDIVNVLSDVVGPLKMTPML---LDALK---SKNARQRSECLLVIEYYITNAGISP-L---KSLSVEKTVA 213 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCHHHHHHHH---HHGGG---CSCHHHHHHHHHHHHHHHHHHCSGG-G---GGGCHHHHHG
T ss_pred ChHHHHHHHHHHHHHHHHHCCHHHHHHHH---HHHHc---cCCHHHHHHHHHHHHHHHHhcCCCc-c---ccccchHHHH
Confidence 44568999999998888887777788843 33333 3357777799999999999999872 2 234 5577
Q ss_pred HHhccCcHHHHHHHHHHHHHHHhcCC
Q 001368 154 KLMKFNEEFVRQEALLLLQNALEGSG 179 (1091)
Q Consensus 154 K~lK~~~a~~R~~~l~~L~kil~g~g 179 (1091)
+++-.....+|-+|+.++..+-+..|
T Consensus 214 ~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 214 PFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 77777889999999999999999888
No 82
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=90.86 E-value=2.6 Score=52.43 Aligned_cols=183 Identities=10% Similarity=0.052 Sum_probs=111.2
Q ss_pred CCchhhHHHHHHHHHHhhcCCcch-hH--HhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHH-hh--cHHHHHH
Q 001368 77 ARRPVRHLASVAMGRIISKGDNIS-VY--SRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRI-TS--GLLETTI 150 (1091)
Q Consensus 77 ~g~P~R~l~a~cla~l~~~GD~~~-lf--dtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l-~s--~~~e~~~ 150 (1091)
+-+-+|..+++.|..|=..-+.+. +- ..+..|..++..+.+.+...+..|+..|..+--.--..+ .+ ...+.+.
T Consensus 469 ~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~ 548 (778)
T 3opb_A 469 LSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIP 548 (778)
T ss_dssp SCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchH
Confidence 456679999999999943322221 21 134566677764433222223367888887663221111 11 1126888
Q ss_pred HHHHHhcc-CcH-------------HHHHHHHHHHHHHHhcCCCCC---chhHHH--HHHHHHHHHhccCcchHHHHHHH
Q 001368 151 IAAKLMKF-NEE-------------FVRQEALLLLQNALEGSGGSA---AASAYS--EAFRLIMRFAIVDKSFVVRIAGA 211 (1091)
Q Consensus 151 ~llK~lK~-~~a-------------~~R~~~l~~L~kil~g~g~~~---~~~~~~--di~K~~~r~~~~Dks~~Vr~aAa 211 (1091)
-+++++.. .+. .-+++++.+|.++..+-++.+ ...+.+ ..|+. ....+.+....||.||+
T Consensus 549 pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~-L~~LL~s~n~~VrrAA~ 627 (778)
T 3opb_A 549 FLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWST-IENLMLDENVPLQRSTL 627 (778)
T ss_dssp HHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHH-HHHGGGCSSHHHHHHHH
T ss_pred HHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHH-HHHHHhCCCHHHHHHHH
Confidence 89999883 221 228899999999987543211 122343 36664 44456666778999999
Q ss_pred HHHHHHHhhcC----CCcccchhhh--HHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 212 RCLKAFAHIGG----PCLGVGELDN--SATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 212 ~cL~~l~~~~~----~~~~~~dlE~--l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
+|+..|..+.. .|+....=.+ =..+.++.++..|.++|.+++-+||.+-
T Consensus 628 elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 628 ELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999997642 1332211111 1456778889999999999999999874
No 83
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=87.51 E-value=29 Score=35.96 Aligned_cols=179 Identities=16% Similarity=0.171 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcC-CCCChHhHHHHHHHHHHHHHHHhhHH
Q 001368 63 RKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDG-KKSEPQKVAGAAQCLGELYRQFGRRI 141 (1091)
Q Consensus 63 ~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~-K~~sp~~~~aA~~cLG~l~~~~G~~l 141 (1091)
--+.+.|+..+..+-.-|--.-+++.|+.+-.. .+- -|....-+|-++ .-.+|..++.-.++|+++.....+.+
T Consensus 68 epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe----~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~ 142 (253)
T 2db0_A 68 EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPE----LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM 142 (253)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHH----HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHH----HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH
Confidence 334555555555665556556666666665443 221 222333333322 12267777788999999999999888
Q ss_pred hhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q 001368 142 TSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 142 ~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
++-+.+..+.+ -+....=|..++.- ++++|...... ..-+.-. .++-+.|++-.||.+|.+.|..++.-.
T Consensus 143 ~~v~rdi~sml----tskd~~Dkl~aLnF----i~alGen~~~y-v~PfLpr-L~aLL~D~deiVRaSaVEtL~~lA~~n 212 (253)
T 2db0_A 143 ASIVRDFMSML----SSKNREDKLTALNF----IEAMGENSFKY-VNPFLPR-IINLLHDGDEIVRASAVEALVHLATLN 212 (253)
T ss_dssp HHHHHHHHHHT----SCSSHHHHHHHHHH----HHTCCTTTHHH-HGGGHHH-HHGGGGCSSHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHh----cCCChHHHHHHHHH----HHHHhccCccc-cCcchHH-HHHHHcCcchhhhHHHHHHHHHHHHcC
Confidence 88887755443 33334445555544 44588666333 3333332 455689999999999999999998864
Q ss_pred CCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 001368 222 GPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 222 ~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
.-+-.+..-.++-|++.+..|-..+-+.|+.++..
T Consensus 213 ------pklRkii~~kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 213 ------DKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp ------HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 12445555667778999999999999988888753
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.23 E-value=17 Score=46.46 Aligned_cols=183 Identities=10% Similarity=0.094 Sum_probs=131.7
Q ss_pred CCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHh
Q 001368 77 ARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLM 156 (1091)
Q Consensus 77 ~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~l 156 (1091)
-+.++|+....+...++..-.+..+--.+-.+.+.|+.+. +=++|. +|+.|++.+-+....+++..+++++..+...|
T Consensus 107 k~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-kw~~k~-~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 184 (986)
T 2iw3_A 107 KDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETN-KWQEKI-AILAAFSAMVDAAKDQVALRMPELIPVLSETM 184 (986)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCC-CHHHHH-HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-chHHHH-HHHHHHHHHHHHhHHHHHHhccchhcchHhhc
Confidence 4477899988888888888888777777777777775332 234555 99999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHH---------------------------------HhccCcc
Q 001368 157 KFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMR---------------------------------FAIVDKS 203 (1091)
Q Consensus 157 K~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r---------------------------------~~~~Dks 203 (1091)
-...+.+-.++..++.+++.-+++..-+...-.+.|.+.+ =++++|+
T Consensus 185 ~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~ 264 (986)
T 2iw3_A 185 WDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERE 264 (986)
T ss_dssp TCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSS
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCc
Confidence 9888899999999999999999987656666666664211 1255666
Q ss_pred hHHHHHHHHHHHHHHhhcCCCcccchhh----hHHHHHHHhccC-CChhHHHHHHHHHHHHHHhcc
Q 001368 204 FVVRIAGARCLKAFAHIGGPCLGVGELD----NSATHCVKAIED-PIASVRDAFAEALGSLLALGM 264 (1091)
Q Consensus 204 ~~Vr~aAa~cL~~l~~~~~~~~~~~dlE----~l~tl~~K~le~-s~~~vR~a~A~~Lg~lLa~~~ 264 (1091)
.++.+=++-....|.+=- =...|.. .+..-.-|..|. +++++|..+.+++..+.-..-
T Consensus 265 ~~~~r~~~~~~~n~~~lv---~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 265 TGIKRKSAVIIDNMCKLV---EDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHHHHHHHTTC---CCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred chhheeeEEEEcchhhhc---CCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 666655554444444310 0112222 233344455555 899999999999999874433
No 85
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=84.98 E-value=4 Score=48.74 Aligned_cols=165 Identities=16% Similarity=0.109 Sum_probs=117.1
Q ss_pred CCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHH
Q 001368 76 GARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKL 155 (1091)
Q Consensus 76 ~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~ 155 (1091)
.+-.|+|.-.|++|+.+ ..=+.. |+.+..+...+. +..=+.+|+++-.|.-+ -+.+ ..++..+..+++.
T Consensus 239 qVVAPVRETaAQtLGaL-~hLp~e--~~IL~qLV~~l~---~~~WEVRHGGLLGLKYL----~DLL-~~Ld~Vv~aVL~G 307 (800)
T 3oc3_A 239 RTVAPVRDAAAYLLSRI-YPLIGP--NDIIEQLVGFLD---SGDWQVQFSGLIALGYL----KEFV-EDKDGLCRKLVSL 307 (800)
T ss_dssp SCBCHHHHHHHHHHHHH-TTTSCS--CCHHHHHTTGGG---CSCHHHHHHHHHHHHHT----GGGC-CCHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHH-HhCChh--HHHHHHHHhhcC---CCCeeehhhhHHHHHHH----HHHH-HHHHHHHHHHHhh
Confidence 37799999999999999 544443 776667665443 33456778888888766 3333 3489999999999
Q ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHH
Q 001368 156 MKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSAT 235 (1091)
Q Consensus 156 lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~t 235 (1091)
++..+.-+|+.+-.+|--+. ....-+.+..-+|.. ... +.|=+.. -.+-..-|..|..+. +.... ...++.
T Consensus 308 L~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~-L~~-LDDLSAS-TgSVMdLLAkL~s~p-~~a~~--dp~LVP 378 (800)
T 3oc3_A 308 LSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKN-IES-EELISVS-KTSNLSLLTKIYREN-PELSI--PPERLK 378 (800)
T ss_dssp TTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHH-HHT-CCSCCTT-HHHHHHHHHHHHHHC-TTCCC--CSGGGG
T ss_pred cCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHH-hhh-hcccchh-hHHHHHHHHHHHcCC-ccccc--ChHHHH
Confidence 99999999999988887776 222236678888884 554 3442222 222256677777763 32222 237899
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHH
Q 001368 236 HCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 236 l~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
..|-++..+-.+||.|+-+++-+++
T Consensus 379 RL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 379 DIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999997766
No 86
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=84.22 E-value=80 Score=38.02 Aligned_cols=79 Identities=13% Similarity=0.002 Sum_probs=52.4
Q ss_pred HHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCC--------chHHHHHHHHHHHHHHHh
Q 001368 379 LVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHS--------SQLVRIEAALTLRALAEV 450 (1091)
Q Consensus 379 ~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l~~ll~hp--------s~svRi~AA~cLr~~~~a 450 (1091)
+..|++.+.+ +++.....|..++++|-..-.. -..+.......|+++|.|+ +..++..|.|+|..++..
T Consensus 357 lp~Lv~LL~s--~~~~v~~~A~~aL~nLs~~~~~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~ 433 (584)
T 3l6x_A 357 LSAIADLLTN--EHERVVKAASGALRNLAVDARN-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE 433 (584)
T ss_dssp HHHHHHGGGC--SCHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHhCChhH-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC
Confidence 4455554433 2444566777777777553221 1235556778999999998 467899999999999977
Q ss_pred CCcchhhHHH
Q 001368 451 DPTCVSGLIT 460 (1091)
Q Consensus 451 ~P~~~~~ll~ 460 (1091)
.|.+...+++
T Consensus 434 ~~~~~~~I~~ 443 (584)
T 3l6x_A 434 NLEAAKKLRE 443 (584)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7766555443
No 87
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=79.48 E-value=1.5e+02 Score=38.05 Aligned_cols=143 Identities=8% Similarity=0.007 Sum_probs=86.6
Q ss_pred cHHHHHHHHHHHHHhhhccCCcHHH---HHHHHHHHhhcccC---CCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Q 001368 351 DSHALACVLYILRIGVTDQMTEPTQ---RSFLVFLGKQLQAV---DASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDST 424 (1091)
Q Consensus 351 ~~~~r~~v~~ILr~~i~~~LgE~~Q---~~~~~~l~~~~~~~---~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~ 424 (1091)
+-..+...-|.++.+-+.+..|.-. .+++..+++..+.. |+....--+++-.+|..-+.+.. -++.-..+...
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~ 544 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILK 544 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHH
Confidence 4455677778888877655544222 25555555533321 12221122455666655555532 23445556667
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHhCCcch--------hhHHHHHHHHHHhhhhhhccccCCcccchhhhhchHHHHHH
Q 001368 425 VVAAVSHSSQLVRIEAALTLRALAEVDPTCV--------SGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVA 496 (1091)
Q Consensus 425 l~~ll~hps~svRi~AA~cLr~~~~a~P~~~--------~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~alA 496 (1091)
+++-+.-++..|+-+|+|+++.+|..+...+ .|.++..+..+...... . .+......--|++
T Consensus 545 L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~--------l--~~~~~~~lyeai~ 614 (1023)
T 4hat_C 545 LFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD--------L--QPQQVHTFYKACG 614 (1023)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT--------S--CHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHh--------C--CHHHHHHHHHHHH
Confidence 7777755667899999999999999877654 35666666555544321 1 1455577778899
Q ss_pred HHHhhcCC
Q 001368 497 ALIFISPK 504 (1091)
Q Consensus 497 ALl~~~~~ 504 (1091)
.+++..+.
T Consensus 615 ~vi~~~~~ 622 (1023)
T 4hat_C 615 IIISEERS 622 (1023)
T ss_dssp HHHTTCCS
T ss_pred HHHHhCCC
Confidence 99998873
No 88
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=78.02 E-value=28 Score=43.39 Aligned_cols=198 Identities=14% Similarity=0.100 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHhhcCCCc--hhhHHHHHHHHHHhhcCCcchhH------HhHHHHHHhhhcCC--CC------ChH---
Q 001368 61 WQRKCEDALYSLLILGARR--PVRHLASVAMGRIISKGDNISVY------SRVSSLQGFLSDGK--KS------EPQ--- 121 (1091)
Q Consensus 61 ~Q~~l~~~L~~~l~~~~g~--P~R~l~a~cla~l~~~GD~~~lf------dtvn~l~~iL~~~K--~~------sp~--- 121 (1091)
.|.-..+.|.+++..++.. +.|...+++|+++-...|+..+| +.|--|..+|..+. +. ++.
T Consensus 495 vqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l 574 (778)
T 3opb_A 495 AQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT 574 (778)
T ss_dssp HHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHH
T ss_pred HHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHH
Confidence 3445567777777766432 37999999999998777755554 77889999997211 11 111
Q ss_pred hHHHHHHHHHHHHHHH-------hhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCC----Cc-h-hHHH
Q 001368 122 KVAGAAQCLGELYRQF-------GRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGS----AA-A-SAYS 188 (1091)
Q Consensus 122 ~~~aA~~cLG~l~~~~-------G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~----~~-~-~~~~ 188 (1091)
-..-|+-+|+-+-..- .+.+... ...+..+..++.+.+..+|.++..++.++...-.+- .+ + .-..
T Consensus 575 ~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~ 653 (778)
T 3opb_A 575 DNYEALLALTNLASSETSDGEEVCKHIVST-KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSL 653 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHH
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHh-cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhh
Confidence 1225666666654432 2223221 236778888888888999999999999999744321 11 1 0011
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc--ccchhhhHHHHHHHhccC--CChhHHHHHHHHHHHHHH
Q 001368 189 EAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL--GVGELDNSATHCVKAIED--PIASVRDAFAEALGSLLA 261 (1091)
Q Consensus 189 di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~--~~~dlE~l~tl~~K~le~--s~~~vR~a~A~~Lg~lLa 261 (1091)
.=++...+- +...+..+|.||+..|..+.... +.. .--+-+......+..+++ ++..+|+-.+.++-.+.-
T Consensus 654 ~rL~lLV~L-l~s~D~~~r~AAagALAnLts~~-~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 654 RNFNILVKL-LQLSDVESQRAVAAIFANIATTI-PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHG-GGCSCHHHHHHHHHHHHHHHHHC-HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 113322332 34588999999998887775432 221 000111233344555566 899999999999999873
No 89
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=77.38 E-value=12 Score=40.12 Aligned_cols=94 Identities=18% Similarity=0.087 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHH-hccCcchHHHHHHHHHHHHHHh-hcC
Q 001368 145 LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRF-AIVDKSFVVRIAGARCLKAFAH-IGG 222 (1091)
Q Consensus 145 ~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~-~~~Dks~~Vr~aAa~cL~~l~~-~~~ 222 (1091)
.++....+.++.+....++|+-+..+|.+. . . ..+++.. +|. ...|++..||-.++..+..+.. .+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~----~~~~L~~-ir~~va~D~~WrVre~lA~a~~~~~~~~~- 136 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----K----DKEILIF-MRDEVSKDNNWRVQEVLAKAFDEFCKKIE- 136 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----T----SHHHHHH-HHHTGGGCSCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----C----cHHHHHH-HHHHhCCCCCccHHHHHHHHHHHHHHhcC-
Confidence 567777778888888899999999988875 2 1 2678885 665 6789999999999999998886 43
Q ss_pred CCcccchhhhHHHHHHHhccCCChhHHHHHHHHHH
Q 001368 223 PCLGVGELDNSATHCVKAIEDPIASVRDAFAEALG 257 (1091)
Q Consensus 223 ~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg 257 (1091)
| |.......+-..++|..||+++++.+-
T Consensus 137 p-------e~~l~~~~~W~~d~n~~VRR~Ase~~r 164 (240)
T 3l9t_A 137 Y-------KKALPIIDEWLKSSNLHTRRAATEGLR 164 (240)
T ss_dssp T-------TTTHHHHHHHHHCSSHHHHHHHHHHTC
T ss_pred H-------HHHHHHHHHHhcCCCHHHHHHHHHhhH
Confidence 2 556677889999999999999887653
No 90
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=75.61 E-value=6.2 Score=45.75 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=73.2
Q ss_pred CCchhHHHHHhHHhhhcccC---ccchhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccCc---hhhhhhchHHHHHHhh
Q 001368 983 CSSPKWSVRFTQQLVLFAPQ---AVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDP---DSVIEERIEGNLFHML 1056 (1091)
Q Consensus 983 ~~~~~eai~clQqL~lFAP~---~v~~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a---~~v~~~~le~~Lf~~L 1056 (1091)
++.+.+|..+++.|....|. .|--..-+|.|...|.|+++.++..|+.+|++|...++ ..|.+.|-...|..+|
T Consensus 16 ~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL 95 (457)
T 1xm9_A 16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLL 95 (457)
T ss_dssp THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence 33468889999998765554 33335568999999999999999999999999998633 2455779999999999
Q ss_pred ccCCCHHHHHHHHHHhhhhcc
Q 001368 1057 DEETDSEYVKSYTLCLAYFSS 1077 (1091)
Q Consensus 1057 D~e~d~~l~~~~~~~~~~~~~ 1077 (1091)
...+|++.++.-.|+....+.
T Consensus 96 ~~~~~~~~~~~a~~aL~nLa~ 116 (457)
T 1xm9_A 96 RRTGNAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp TTCCCHHHHHHHHHHHHHHHT
T ss_pred hhCCCHHHHHHHHHHHHHHhc
Confidence 877888888866665544443
No 91
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=74.31 E-value=86 Score=32.54 Aligned_cols=199 Identities=15% Similarity=0.206 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccC
Q 001368 186 AYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMN 265 (1091)
Q Consensus 186 ~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~ 265 (1091)
+-++|.|...++ +.|---.||.-|...+..+.++. |-++..-++.+..+.-| +..-..-..+|+.+|.+.-- .
T Consensus 29 ~d~~~l~~lI~~-LDDDlwtV~kNAl~vi~~i~~~~-~el~epl~~kL~vm~~k---sEaIpltqeIa~a~G~la~i--~ 101 (253)
T 2db0_A 29 YDESVLKKLIEL-LDDDLWTVVKNAISIIMVIAKTR-EDLYEPMLKKLFSLLKK---SEAIPLTQEIAKAFGQMAKE--K 101 (253)
T ss_dssp HCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHH--C
T ss_pred hhHHHHHHHHHH-hccHHHHHHHhHHHHHHHHHHHh-HHHHHHHHHHHHHHHhh---cccCchHHHHHHHHhHHHHh--C
Confidence 335566654443 77788899999999999998875 43332333333333222 33344567899999987611 1
Q ss_pred CCCcCCCCCCCCCCCCCChHHHHHHHhhhhhcccCCCCcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhc
Q 001368 266 PQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLR 345 (1091)
Q Consensus 266 ~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~ 345 (1091)
|. ....+.- .+-..| |. .--++|+|++.+.-..-+.-.+ -+.++...|..+++
T Consensus 102 Pe---------------~v~~vVp-~lfany-ri---gd~kikIn~~yaLeeIaranP~-------l~~~v~rdi~smlt 154 (253)
T 2db0_A 102 PE---------------LVKSMIP-VLFANY-RI---GDEKTKINVSYALEEIAKANPM-------LMASIVRDFMSMLS 154 (253)
T ss_dssp HH---------------HHHHHHH-HHHHHS-CC---CSHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHTS
T ss_pred HH---------------HHHhhHH-HHHHHH-hc---CCccceecHHHHHHHHHHhChH-------HHHHHHHHHHHHhc
Confidence 11 1112221 333334 22 1367888887766555443221 12455555666665
Q ss_pred cCCCccHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Q 001368 346 ADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTV 425 (1091)
Q Consensus 346 ~~~~~~~~~r~~v~~ILr~~i~~~LgE~~Q~~~~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~~~~l~d~l 425 (1091)
.+.+. -.....+|| ..+|+..........+-|
T Consensus 155 skd~~--Dkl~aLnFi----------------------------------------------~alGen~~~yv~PfLprL 186 (253)
T 2db0_A 155 SKNRE--DKLTALNFI----------------------------------------------EAMGENSFKYVNPFLPRI 186 (253)
T ss_dssp CSSHH--HHHHHHHHH----------------------------------------------HTCCTTTHHHHGGGHHHH
T ss_pred CCChH--HHHHHHHHH----------------------------------------------HHHhccCccccCcchHHH
Confidence 22211 112333444 566776666666678899
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHH
Q 001368 426 VAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLN 467 (1091)
Q Consensus 426 ~~ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~ 467 (1091)
+.+|-..+.-||..|..+|-.++...|. +.+.+..-++.++
T Consensus 187 ~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~ 227 (253)
T 2db0_A 187 INLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELN 227 (253)
T ss_dssp HGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCC
T ss_pred HHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhc
Confidence 9999999999999999999999999999 8888876666654
No 92
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=71.72 E-value=18 Score=42.22 Aligned_cols=173 Identities=13% Similarity=0.041 Sum_probs=104.1
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccchh--hhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 001368 888 TVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHVQ--ATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPE 965 (1091)
Q Consensus 888 ~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v~--stL~ll~~lll~~~~~~~~~~~~igr~l~alI~~LGPe 965 (1091)
++..|..|.+.+++.|+..+.-+|.-+....+......+- ..+..+.++|+..+ ..++.....+.+-.|.+ .+++
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~--~~~v~~~A~~aL~nLs~-~~~~ 320 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLKSVLSALWNLSA-HCTE 320 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC--SHHHHHHHHHHHHHHHH-HCHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC--CHHHHHHHHHHHHHHcc-CCHH
Confidence 3556778888888999988887777664210111222221 34566667766432 33444444444444333 1222
Q ss_pred CC-----Cchh---hhHhhhccccCCC----chhHHHHHhHHhhhc---ccCccc---hhhHHHHHHHhhcCCChHHHHH
Q 001368 966 LA-----PGSI---FFSRCKVSAWQCS----SPKWSVRFTQQLVLF---APQAVS---VHSHVQTLLSTLSSRQPILRHL 1027 (1091)
Q Consensus 966 Lq-----~~s~---~~~~~~~~~~~~~----~~~eai~clQqL~lF---AP~~v~---~~~lV~~L~~~L~S~~~~Lr~a 1027 (1091)
.+ ..+- +..+. ..-.+. ...++..++..|..| .|.... -...+|.|...|.+.....++.
T Consensus 321 nk~~I~~~~Gal~~Lv~LL--~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~ 398 (458)
T 3nmz_A 321 NKADICAVDGALAFLVGTL--TYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 398 (458)
T ss_dssp HHHHHHHSTTHHHHHHHHT--TCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHh--cCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHH
Confidence 11 0111 11111 111221 347788888888764 333221 1346899999999999999999
Q ss_pred HHHHHHHHHccCch---hhhhhchHHHHHHhhccCCCHHHHH
Q 001368 1028 AVSTLRHLIEKDPD---SVIEERIEGNLFHMLDEETDSEYVK 1066 (1091)
Q Consensus 1028 Av~cLrqL~qr~a~---~v~~~~le~~Lf~~LD~e~d~~l~~ 1066 (1091)
|+.+|.+|..+++. .+.+.|....|..+|+.. |.++++
T Consensus 399 A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~ 439 (458)
T 3nmz_A 399 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAM 439 (458)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHH
Confidence 99999999976553 456779999999999764 777766
No 93
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=71.11 E-value=66 Score=34.63 Aligned_cols=129 Identities=13% Similarity=0.128 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCC
Q 001368 38 LCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKK 117 (1091)
Q Consensus 38 ~~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~ 117 (1091)
--.+-|+.+.+.+...+++-. .+..+++..+. ..+..++|+.++.=+...|.+ +...+-..+..|..+++ +
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll----~~~l~~il~~~-~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~~l~~L~~Ll~---d 101 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELA----EEFLESVLSLA-HDSNMEVRKQVVAFVEQVCKV-KVELLPHVINVVSMLLR---D 101 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGH----HHHHHHHHGGG-GCSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHTT---C
T ss_pred HHHHHHHHHHHHHHccCHhHH----HHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHc---C
Confidence 667778887877766565432 34456666643 457788899999999999966 78888999999999997 4
Q ss_pred CChHhHHHHHHHHHHHHHHHhhHHhhc-------------HHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 001368 118 SEPQKVAGAAQCLGELYRQFGRRITSG-------------LLETTIIAAKLMKFNEEFVRQEALLLLQNAL 175 (1091)
Q Consensus 118 ~sp~~~~aA~~cLG~l~~~~G~~l~s~-------------~~e~~~~llK~lK~~~a~~R~~~l~~L~kil 175 (1091)
.+|...=-|+.|.+.+|...=+.+... +...=..++..+.+.+.++|.++++.++.++
T Consensus 102 ~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 102 NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 456522259999999999765555443 2223333444444467899999999999977
No 94
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=68.63 E-value=37 Score=35.74 Aligned_cols=186 Identities=11% Similarity=0.002 Sum_probs=104.9
Q ss_pred HHHHHHhhccC-ChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChH
Q 001368 43 LSDLISAIDEE-PKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQ 121 (1091)
Q Consensus 43 L~~L~~~l~~~-~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~ 121 (1091)
+..+.+.|.+. |++.-...+++.... . -..|.+-|.|+-+|+=+.+=...-+.....+ .+..+.. ...-+
T Consensus 6 ~~~i~~~L~~~ad~~~a~~~~~~~k~~-~--~~lGVr~P~lR~laK~~~k~~~~~~~~~~~~---~~~~L~~---~~~~E 76 (232)
T 3jxy_A 6 VKALQEHFTAHQNPEKAEPMARYMKNH-F--LFLGIQTPERRQLLKDIIQIHTLPDQKDFQI---IIRELWD---LPERE 76 (232)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTS-S--BCCCCCHHHHHHHHHHHHHHHCCCCGGGHHH---HHHHHHT---SSBHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHCCCC-C--eeeccChHHHHHHHHHHHHhccccchhhHHH---HHHHHhc---CcHHH
Confidence 34555555444 444444455554433 1 2477889999999998876655444333334 4444443 12233
Q ss_pred hHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhc
Q 001368 122 KVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLM--KFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAI 199 (1091)
Q Consensus 122 ~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~l--K~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~ 199 (1091)
-+..|+..+...++.+.. +....+-..+ ++|=+.+-..+-..+.+++.. -++.....+.+ -.
T Consensus 77 ~r~~ai~~l~~~~k~~~~-------~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~----~p~~~~~~l~~-----W~ 140 (232)
T 3jxy_A 77 FQAAALDIMQKYKKHINE-------THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLK----HPELISAYIPK-----WI 140 (232)
T ss_dssp HHHHHHHHHHHTGGGCCG-------GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHH----CGGGGGGTHHH-----HH
T ss_pred HHHHHHHHHHHHHHhCCH-------HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHH----CHHHHHHHHHH-----Hh
Confidence 444566666533322211 1111222232 345455554444555555553 11112222222 24
Q ss_pred cCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 200 VDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 200 ~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
.|...-+|++|+.++. ++....|++.+..++...+.++.+-||.|+|=+|.++.
T Consensus 141 ~s~~~w~rR~ai~~~l-------~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~ 194 (232)
T 3jxy_A 141 ASDNIWLQRAAILFQL-------KYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYA 194 (232)
T ss_dssp HSSCHHHHHHHHHTTT-------TCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred cCCchHHHHHHHHHHH-------HHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 5777888888887752 34455778888888999999999999999999999866
No 95
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=68.40 E-value=53 Score=42.09 Aligned_cols=181 Identities=12% Similarity=0.052 Sum_probs=119.7
Q ss_pred HHHHhhcCCCchhhHHHHHHHHHHhhc--CCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHH--hhc
Q 001368 69 LYSLLILGARRPVRHLASVAMGRIISK--GDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRI--TSG 144 (1091)
Q Consensus 69 L~~~l~~~~g~P~R~l~a~cla~l~~~--GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l--~s~ 144 (1091)
+.+-+.-+. ++.|+-.+..++.++.. ++...-+..++.+.+.++ +|+ ++ - +|+..++++++.+|..- --.
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~-~~--~-~a~~~~~~~~~~~~~~~~~e~~ 92 (986)
T 2iw3_A 19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIK-DKK-TA--A-NAMQAVAHIANQSNLSPSVEPY 92 (986)
T ss_dssp HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHT-SHH-HH--H-HHHHHHHHHTCTTTCCTTTHHH
T ss_pred HHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHh-ccC-CH--H-HHHHHHHHHHHhcCCCCCcccc
Confidence 555455444 67788899999998873 343333566667777665 332 33 3 79999999998887632 122
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHhhcCC
Q 001368 145 LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVD-KSFVVRIAGARCLKAFAHIGGP 223 (1091)
Q Consensus 145 ~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~D-ks~~Vr~aAa~cL~~l~~~~~~ 223 (1091)
+-..+..++..+-.....+|.++-.+...++..+..-+ .+-+....+++ +.+ .--..+.+|.+|+..|+... |
T Consensus 93 ~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a----~~~~~~~~~~~-~~~~~kw~~k~~~l~~~~~~~~~~-~ 166 (986)
T 2iw3_A 93 IVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA----IKALLPHLTNA-IVETNKWQEKIAILAAFSAMVDAA-K 166 (986)
T ss_dssp HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG----HHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHS-H
T ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHH-hccccchHHHHHHHHHHHHHHHHh-H
Confidence 22234566666655667899999999999999877333 35555543333 322 34789999999999999874 3
Q ss_pred CcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 001368 224 CLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLA 261 (1091)
Q Consensus 224 ~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa 261 (1091)
-.-...+-.+....-.++-+--.+|..++-+++-.+..
T Consensus 167 ~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 167 DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 22233445566677777777778888877777766653
No 96
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=66.56 E-value=1.4e+02 Score=31.83 Aligned_cols=124 Identities=18% Similarity=0.063 Sum_probs=82.5
Q ss_pred CCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHH-HhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 001368 117 KSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAK-LMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIM 195 (1091)
Q Consensus 117 ~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK-~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~ 195 (1091)
+++-+.+..|+..||.. +..++....+.+ ..+..+=.+|..+-.++.+.+...+.- ... . .+
T Consensus 82 ~~~deVR~~Av~lLg~~---------~~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~~l----~-~~ 144 (240)
T 3l9t_A 82 SDVYQVRMYAVFLFGYL---------SKDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---KAL----P-II 144 (240)
T ss_dssp CSSHHHHHHHHHHHHHT---------TTSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---TTH----H-HH
T ss_pred CcchHHHHHHHHHHHhc---------cCcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---HHH----H-HH
Confidence 33445565788877744 133555555544 333356789999999999999755522 111 1 12
Q ss_pred HHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 196 RFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 196 r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
..=..|.++-||++|+++..--... +. -..|.|.+..++-.-.++++..||.|+|-.|-.+-
T Consensus 145 ~~W~~d~n~~VRR~Ase~~rpW~~~--~~-~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 145 DEWLKSSNLHTRRAATEGLRIWTNR--PY-FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp HHHHHCSSHHHHHHHHHHTCSGGGS--TT-TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhhHHHhcc--ch-hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 2235799999999999886421111 11 24666778999999999999999999999888854
No 97
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=66.19 E-value=30 Score=38.83 Aligned_cols=175 Identities=13% Similarity=0.027 Sum_probs=101.7
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHHHhCCCcccch-h-hhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 001368 888 TVSSISLLAKTSIPGLQMWSLHGLLLTIEAAGFSFVSHV-Q-ATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPE 965 (1091)
Q Consensus 888 ~v~iL~sL~~Dp~P~Vh~WaL~aL~li~dsaG~~f~~~v-~-stL~ll~~lll~~~~~~~~~~~~igr~l~alI~~LGPe 965 (1091)
++..|..|.+.+++.|+..+.-+|.-+....+......+ + ..+..+.++|+..+ ..++.....+.+-.|.+ ..++
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~nLs~-~~~~ 204 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLKSVLSALWNLSA-HCTE 204 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHT-TCHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC--CHHHHHHHHHHHHHHHc-cChh
Confidence 355677888888899998777777766432111222222 1 34566667665432 23344333333333322 1222
Q ss_pred CC-----CchhhhHhhhc-cccCCC----chhHHHHHhHHhhhc---ccCccc---hhhHHHHHHHhhcCCChHHHHHHH
Q 001368 966 LA-----PGSIFFSRCKV-SAWQCS----SPKWSVRFTQQLVLF---APQAVS---VHSHVQTLLSTLSSRQPILRHLAV 1029 (1091)
Q Consensus 966 Lq-----~~s~~~~~~~~-~~~~~~----~~~eai~clQqL~lF---AP~~v~---~~~lV~~L~~~L~S~~~~Lr~aAv 1029 (1091)
.+ ..+-+-.++.. ..-.+. ...++..+|..|..+ .|.... -...+|.|...|.+.....++.|+
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence 11 00000011100 111111 246778888888764 333221 134689999999999999999999
Q ss_pred HHHHHHHccCch---hhhhhchHHHHHHhhccCCCHHHHH
Q 001368 1030 STLRHLIEKDPD---SVIEERIEGNLFHMLDEETDSEYVK 1066 (1091)
Q Consensus 1030 ~cLrqL~qr~a~---~v~~~~le~~Lf~~LD~e~d~~l~~ 1066 (1091)
.+|.+|..+++. .+.+.|....|..+|+.. +.++++
T Consensus 285 ~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~ 323 (354)
T 3nmw_A 285 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAM 323 (354)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHH
Confidence 999999976553 456779999999999875 667666
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=65.13 E-value=52 Score=39.57 Aligned_cols=201 Identities=14% Similarity=0.059 Sum_probs=126.3
Q ss_pred CCchhhHHHHHHHHHHhhc-C------CcchhHHhHHHHHHhhhcCC-CC-------ChHhHHHHHHHHHHHHHHHhhHH
Q 001368 77 ARRPVRHLASVAMGRIISK-G------DNISVYSRVSSLQGFLSDGK-KS-------EPQKVAGAAQCLGELYRQFGRRI 141 (1091)
Q Consensus 77 ~g~P~R~l~a~cla~l~~~-G------D~~~lfdtvn~l~~iL~~~K-~~-------sp~~~~aA~~cLG~l~~~~G~~l 141 (1091)
|.==+||-.|-.|-.|++. | |...- |-+-.|.-++.=.+ .| -|-+- .|.++||.+ ..+...
T Consensus 186 p~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRE-TaAQtLGaL-~hLp~e- 261 (800)
T 3oc3_A 186 YEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRD-AAAYLLSRI-YPLIGP- 261 (800)
T ss_dssp SSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHH-HHHHHHHHH-TTTSCS-
T ss_pred cchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHH-HHHHHHHHH-HhCChh-
Confidence 4455699999999888874 3 11111 44444554554222 22 37777 799999998 655554
Q ss_pred hhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q 001368 142 TSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 142 ~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
+ .++..+++.+...+=.+|...|..|.-. ..-... .-++++ ++-.++.|.+=.||.+||.+|.
T Consensus 262 ---~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~--Ld~Vv~-aVL~GL~D~DDDVRAVAAetLi------ 324 (800)
T 3oc3_A 262 ---N-DIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED--KDGLCR-KLVSLLSSPDEDIKLLSAELLC------ 324 (800)
T ss_dssp ---C-CHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC--HHHHHH-HHHHHTTCSSHHHHHHHHHHHT------
T ss_pred ---H-HHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH--HHHHHH-HHHhhcCCcccHHHHHHHHHhh------
Confidence 2 3444444555666778999999999876 211212 566777 4667899999999999999993
Q ss_pred CCCcccchhhhHHHHHHHhccCCCh--hHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhhhhccc
Q 001368 222 GPCLGVGELDNSATHCVKAIEDPIA--SVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRA 299 (1091)
Q Consensus 222 ~~~~~~~dlE~l~tl~~K~le~s~~--~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~~f~r~ 299 (1091)
|......++.+.+.||-.+.+-++ ..-.++=.+||.+...... +.. . + +.+ ----||+|-
T Consensus 325 -PIA~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~------d-p-----~LV--PRL~PFLRH 386 (800)
T 3oc3_A 325 -HFPITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSI------P-P-----ERL--KDIFPCFTS 386 (800)
T ss_dssp -TSCCSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCC------C-S-----GGG--GGTGGGGTC
T ss_pred -hhcchhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---ccc------C-h-----HHH--HHHHhhhcC
Confidence 444567799999999999876432 2233445577776644311 000 0 0 111 111478888
Q ss_pred CCCCcchhHHHHHHHHHHHH
Q 001368 300 NGAKSKNMRVNLTLSWVYFL 319 (1091)
Q Consensus 300 ~~~~~r~~R~Gv~~ayv~fl 319 (1091)
+--.||..+..+...|+
T Consensus 387 ---tITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 387 ---PVPEVRTSILNMVKNLS 403 (800)
T ss_dssp ---SSHHHHHHHHHHTTTCC
T ss_pred ---CcHHHHHHHHHHHHHHH
Confidence 46789988887776665
No 99
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=64.76 E-value=76 Score=36.24 Aligned_cols=128 Identities=12% Similarity=0.094 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCC
Q 001368 39 CFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKS 118 (1091)
Q Consensus 39 ~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~ 118 (1091)
-.+-|+.+.+.+...+++-.. .+.+++.+.. ..+...+|+.++.-+...|.+ +.-.+-..+..|..+++ +.
T Consensus 42 Kl~~L~q~~EL~l~~dpsLl~----~fl~~il~f~-~d~~~~vRk~~a~FieEa~~~-~~el~~~~l~~L~~LL~---d~ 112 (386)
T 3o2t_A 42 KITVLKQVQELIINKDPTLLD----NFLDEIIAFQ-ADKSIEVRKFVIGFIEEACKR-DIELLLKLIANLNMLLR---DE 112 (386)
T ss_dssp HHHHHHHHHHHHHTTCGGGGG----GGHHHHHGGG-GCSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHT---CS
T ss_pred HHHHHHHHHHHHhccCHHHHH----HHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHc---CC
Confidence 555566655555444443211 1222232222 334577899999999999975 78788999999999996 44
Q ss_pred ChHhHHHHHHHHHHHHHHHhhHH-------------hhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 001368 119 EPQKVAGAAQCLGELYRQFGRRI-------------TSGLLETTIIAAKLMKFNEEFVRQEALLLLQNAL 175 (1091)
Q Consensus 119 sp~~~~aA~~cLG~l~~~~G~~l-------------~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil 175 (1091)
+|...=.++.|.+.+|...=+.+ -..+...-..++..+.+.+.++|.++++.++.++
T Consensus 113 d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 113 NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 55422258999999996443332 2233333344444455567889999998888877
No 100
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=62.21 E-value=1e+02 Score=39.70 Aligned_cols=218 Identities=13% Similarity=0.057 Sum_probs=107.7
Q ss_pred HHHHHHHHHhhhccC-CCCchHHHHHHHHHHHhhccCChhhHHHHHHHHH------HHHHHHhhcCCCchh----hHH--
Q 001368 18 LVAQLESIVASASQQ-SPDPLLCFDLLSDLISAIDEEPKESILLWQRKCE------DALYSLLILGARRPV----RHL-- 84 (1091)
Q Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~f~~L~~L~~~l~~~~k~di~~~Q~~l~------~~L~~~l~~~~g~P~----R~l-- 84 (1091)
++.-|..|+.+-.+. +.+... .+ ..|.+.+..++.+++++.=+++. ..+...|...--+|. +++
T Consensus 290 ~~e~lk~L~~~~~~~v~~~~~~--~f-~~Lv~~lR~~~~e~L~~l~~~~~~~~~~r~~~lDal~~aGT~~a~~~i~~~i~ 366 (1056)
T 1lsh_A 290 IHTVLKHLVENNQLSVHEDAPA--KF-LRLTAFLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRTLA 366 (1056)
T ss_dssp HHHHHHHHHHHCSSSCCTTHHH--HH-HHHHHHHTTSCHHHHHHHHHHHTTSHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCcchHH--HH-HHHHHHHhcCCHHHHHHHHHHHhccHHHHHHHHHHhHhcCCHHHHHHHHHHHH
Confidence 555566666543322 233322 22 45688899999999886554432 112222211111111 111
Q ss_pred --------HHHHHHHHhhcCCcchhHHhHHHHHHhhhcCC-CCChHhHHHHHHHHHHHHHHHhhHHhhc----HHHHHHH
Q 001368 85 --------ASVAMGRIISKGDNISVYSRVSSLQGFLSDGK-KSEPQKVAGAAQCLGELYRQFGRRITSG----LLETTII 151 (1091)
Q Consensus 85 --------~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K-~~sp~~~~aA~~cLG~l~~~~G~~l~s~----~~e~~~~ 151 (1091)
.+..++.....- .+==+.+..+.++++..+ +++|.-+..|+-++|.|-.++-..-... .+.....
T Consensus 367 ~~~l~~~ea~~~l~~~~~~~--~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~ 444 (1056)
T 1lsh_A 367 SEQLTSAEATQIVASTLSNQ--QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDL 444 (1056)
T ss_dssp TTCSCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhccC--CCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 222222222211 122234555666665322 2344433467778888877776432222 2333333
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHH---hccCcchHHHHHHHHHHHHHHhhcCCCcccc
Q 001368 152 AAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRF---AIVDKSFVVRIAGARCLKAFAHIGGPCLGVG 228 (1091)
Q Consensus 152 llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~---~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~ 228 (1091)
+.+.+.+.+..-+.-++++|++ +|- +...+-+-|. ... .-.+....||.+|+..|..+....
T Consensus 445 l~~~~~~~~~~~~~~~LkaLGN----~g~---p~~l~~l~~~-l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~------- 509 (1056)
T 1lsh_A 445 LSQSSDRAKEEEIVLALKALGN----AGQ---PNSIKKIQRF-LPGQGKSLDEYSTRVQAEAIMALRNIAKRD------- 509 (1056)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH----HTC---GGGHHHHHTT-STTSSSCCCCSCHHHHHHHHHTTTTGGGTC-------
T ss_pred HHHHHhcCChHHHHHHHHHhhc----cCC---hhHHHHHHHh-hcCccccccccchHHHHHHHHHHHHhhhhc-------
Confidence 3333333443344444444444 662 2334444442 211 112345679999988876666542
Q ss_pred hhhhHHHHHHHhc--cCCChhHHHHHHHHH
Q 001368 229 ELDNSATHCVKAI--EDPIASVRDAFAEAL 256 (1091)
Q Consensus 229 dlE~l~tl~~K~l--e~s~~~vR~a~A~~L 256 (1091)
=+.+..+.++.+ .+.++++|.++...|
T Consensus 510 -p~~v~~il~~i~~n~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 510 -PRKVQEIVLPIFLNVAIKSELRIRSCIVF 538 (1056)
T ss_dssp -HHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 156888888888 558889998765544
No 101
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=61.09 E-value=15 Score=39.11 Aligned_cols=75 Identities=16% Similarity=-0.035 Sum_probs=50.2
Q ss_pred HHHHHhhcccCCCChhHHHHHHHHHHHHHHHhCCCchhh-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCc
Q 001368 379 LVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEF-KEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPT 453 (1091)
Q Consensus 379 ~~~l~~~~~~~~~s~~~lv~aL~el~~Ll~~LGsa~~~~-~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~ 453 (1091)
+..+++.+.+.++...+...|..++..|...=...-..+ ..+...+|+++|.+++..+|-+|+|+|+.++.-.|.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 344556566666655566667777766554211011112 335678999999999999999999999999965554
No 102
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=60.26 E-value=31 Score=31.42 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=49.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCcchHHHHHH--Hhhccccc-CCcchhHHHHHHHHHHHhhcCCcccccchhhHHHHHHHH
Q 001368 819 LGSEVLNSIQAIFLSILAEGDICASQRRAL--LLGDLTVV-TDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLL 895 (1091)
Q Consensus 819 l~~~v~~~~~~li~~~l~~~d~~~~~r~aa--~l~~lv~~-~dp~~Ra~~aLALG~I~r~vGgmas~~~l~t~v~iL~sL 895 (1091)
-+++..+.+..+++.+..|...=-+.|++| ....+... .+|..|| .+.+++|=-+
T Consensus 11 e~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRA----------------------AtAIs~LDeI 68 (94)
T 2qzg_A 11 SPADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQELIVRS----------------------ATAIQYLDDI 68 (94)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTSCHHHHH----------------------HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHH----------------------HHHHHHHHHh
Confidence 367778887778888886654323677777 45445444 5788898 5778889999
Q ss_pred hcCCC-Cc---hhHHHHHH
Q 001368 896 AKTSI-PG---LQMWSLHG 910 (1091)
Q Consensus 896 ~~Dp~-P~---Vh~WaL~a 910 (1091)
+|||+ |. ...|-+-+
T Consensus 69 SnDPNmP~htRT~IW~ivS 87 (94)
T 2qzg_A 69 SEDPNMPIHTRTQIWGIVS 87 (94)
T ss_dssp TTCTTCCHHHHHHHHHHHH
T ss_pred hcCCCCChHHHHHHHHHHH
Confidence 99999 53 34566654
No 103
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=59.83 E-value=19 Score=38.19 Aligned_cols=82 Identities=21% Similarity=0.191 Sum_probs=62.9
Q ss_pred hhHHHHHhHHhhhcccC---ccchhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccCc---hhhhhhchHHHHHHhhccC
Q 001368 986 PKWSVRFTQQLVLFAPQ---AVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDP---DSVIEERIEGNLFHMLDEE 1059 (1091)
Q Consensus 986 ~~eai~clQqL~lFAP~---~v~~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a---~~v~~~~le~~Lf~~LD~e 1059 (1091)
+.++..+++.|..=.|. .|--..-||.|...|.|+++.+|..|+.+|++|...+. ..|.+.|-...|-.+|...
T Consensus 27 q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~ 106 (233)
T 3tt9_A 27 ISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQT 106 (233)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccC
Confidence 46888899888754332 23234568999999999999999999999999998654 3466678888888888766
Q ss_pred CCHHHHHH
Q 001368 1060 TDSEYVKS 1067 (1091)
Q Consensus 1060 ~d~~l~~~ 1067 (1091)
+|.+.++-
T Consensus 107 ~~~~~~e~ 114 (233)
T 3tt9_A 107 RDLETKKQ 114 (233)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 67777763
No 104
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=57.76 E-value=48 Score=29.89 Aligned_cols=71 Identities=8% Similarity=0.171 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHHHHHHhcCCcchHHHHHH--Hhhccccc-CCcchhHHHHHHHHHHHhhcCCcccccchhhHHHHHHHH
Q 001368 819 LGSEVLNSIQAIFLSILAEGDICASQRRAL--LLGDLTVV-TDANYAGSIALAIGCIHRSAGGMALSSLVPATVSSISLL 895 (1091)
Q Consensus 819 l~~~v~~~~~~li~~~l~~~d~~~~~r~aa--~l~~lv~~-~dp~~Ra~~aLALG~I~r~vGgmas~~~l~t~v~iL~sL 895 (1091)
.+++..+.+..+++.+..|...=-+.|++| ....+... .+|..|| .+.+++|=-.
T Consensus 7 ~~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRA----------------------A~aIs~LDeI 64 (89)
T 2qsb_A 7 VDQNLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQENESLDLRC----------------------ATVLSMLDEM 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTTSCHHHHH----------------------HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHH----------------------HHHHHHHHHh
Confidence 356777777778888776654323677776 44445444 5788888 4778889999
Q ss_pred hcCCC-Cc---hhHHHHHHH
Q 001368 896 AKTSI-PG---LQMWSLHGL 911 (1091)
Q Consensus 896 ~~Dp~-P~---Vh~WaL~aL 911 (1091)
+|||+ |. ...|-+-+.
T Consensus 65 SnDPNmP~h~RT~IW~ivS~ 84 (89)
T 2qsb_A 65 ANDPNVPAHGRTDLYTIISK 84 (89)
T ss_dssp HTCTTSCHHHHHHHHHHHHH
T ss_pred hcCCCCChHHHHHHHHHHHH
Confidence 99999 53 345766543
No 105
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=53.53 E-value=15 Score=44.47 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=68.9
Q ss_pred chhHHHHHhHHhhhcc-cCc--cchhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccC-c---hhhhhhchHHHHHHhhc
Q 001368 985 SPKWSVRFTQQLVLFA-PQA--VSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKD-P---DSVIEERIEGNLFHMLD 1057 (1091)
Q Consensus 985 ~~~eai~clQqL~lFA-P~~--v~~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~-a---~~v~~~~le~~Lf~~LD 1057 (1091)
.+.+|..++++|..-. +.. |--..-||.|...|.|++..++..|+.+|++|...+ . ..|.+.|-...|-.+|.
T Consensus 64 ~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~ 143 (584)
T 3l6x_A 64 VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLR 143 (584)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHc
Confidence 4578888888887522 221 222346899999999999999999999999999842 2 34666788888889998
Q ss_pred cCCCHHHHHHHHHHhhhhcc
Q 001368 1058 EETDSEYVKSYTLCLAYFSS 1077 (1091)
Q Consensus 1058 ~e~d~~l~~~~~~~~~~~~~ 1077 (1091)
..++.++++..+.|....++
T Consensus 144 s~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 144 KARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp HCCSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHhC
Confidence 87788888766655544444
No 106
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=50.36 E-value=40 Score=43.34 Aligned_cols=84 Identities=14% Similarity=0.026 Sum_probs=60.2
Q ss_pred HhcCCCCC-chhHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCC-hhHHHH
Q 001368 175 LEGSGGSA-AASAYSEAFRLIMRFAIV-DKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPI-ASVRDA 251 (1091)
Q Consensus 175 l~g~g~~~-~~~~~~di~K~~~r~~~~-Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~-~~vR~a 251 (1091)
+..++... .+....++.+. ...... +.+- +|.++..-+..++-.-.-.+...+-+.+..+..+.++++. -+||..
T Consensus 786 l~~ls~~~~~~~~~~~~l~~-l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~ 863 (997)
T 1vsy_5 786 YAGLGYMPIRKNHVAAIVDY-VCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVR 863 (997)
T ss_dssp HHHTSSSCCCHHHHHHHHHH-SSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHH-HHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 44454333 45556667775 444333 5677 9999988775554432123466677789999999999999 999999
Q ss_pred HHHHHHHHH
Q 001368 252 FAEALGSLL 260 (1091)
Q Consensus 252 ~A~~Lg~lL 260 (1091)
+|.+|+.++
T Consensus 864 Aa~tLsgll 872 (997)
T 1vsy_5 864 AASILSDIV 872 (997)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999998
No 107
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=49.38 E-value=87 Score=34.47 Aligned_cols=203 Identities=9% Similarity=0.048 Sum_probs=108.6
Q ss_pred hhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhH-HhhcHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 001368 93 ISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRR-ITSGLLETTIIAAKLMKFNEEFVRQEALLLL 171 (1091)
Q Consensus 93 ~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~-l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L 171 (1091)
|..++...+..-+.++|+-+.++.+-+|+.. .++ .++...+... -...-...+..+.|.++ =+...|--++..|
T Consensus 52 f~~an~~~i~~KL~EfN~~~~~~~~Ls~~el-~~L---~~l~~~l~~~s~~~~~~~~l~~l~kil~-WP~~~~fPvLDLl 126 (304)
T 3ebb_A 52 FDQANPTQILGKLKELNGTAPEEKKLTEDDL-ILL---EKILSLICNSSSEKPTVQQLQILWKAIN-CPEDIVFPALDIL 126 (304)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCGGGCCCHHHH-HHH---HHHHHHHHTTCSSCCCHHHHHHHHHHHT-SCTTTCHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHccccccCcCHHHH-HHH---HHHHHHHhccCCCccchHHHHHHHHHHc-CCHHhHHHHHHHH
Confidence 4455556666666666665432223455544 233 3333322211 01122235567777763 2223344444444
Q ss_pred HHHHhcCCCC---CchhHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHhhcCCC--cccchhhhHHHHHHHhccCCC
Q 001368 172 QNALEGSGGS---AAASAYSEAFRLIMRFAIVD-KSFVVRIAGARCLKAFAHIGGPC--LGVGELDNSATHCVKAIEDPI 245 (1091)
Q Consensus 172 ~kil~g~g~~---~~~~~~~di~K~~~r~~~~D-ks~~Vr~aAa~cL~~l~~~~~~~--~~~~dlE~l~tl~~K~le~s~ 245 (1091)
+-++..-..+ ..+.-+.++...+.+ ..++ -...-+.-++|++-.++.+. .+ +-.+.++.+...+...+.++|
T Consensus 127 Rl~~l~p~~~~~~~~~~~~~~l~~~l~~-~~~~~~~p~n~ml~lR~l~NlF~~~-~g~~~l~~~~~~il~~~~~~~~~~n 204 (304)
T 3ebb_A 127 RLSIKHPSVNENFCNEKEGAQFSSHLIN-LLNPKGKPANQLLALRTFCNCFVGQ-AGQKLMMSQRESLMSHAIELKSGSN 204 (304)
T ss_dssp HHHTTSHHHHHHHHSTTTHHHHHHHHHH-TTCTTSCHHHHHHHHHHHHHGGGSH-HHHHHHHHTHHHHHHHHHGGGSSCC
T ss_pred HHHHcCccHHHHhhccccchHHHHHHHH-hcCCCCChHHHHHHHHHHHHccCCc-hhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4433211100 001123455543223 3443 34556888999999999874 33 223467778888888888889
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHH--HHHhhhhhcccCCCCcchhHHHHHHHHHHHHH
Q 001368 246 ASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGL--QRHLALPFTRANGAKSKNMRVNLTLSWVYFLQ 320 (1091)
Q Consensus 246 ~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l--~~~Ls~~f~r~~~~~~r~~R~Gv~~ayv~fl~ 320 (1091)
..+|.|+|.++-++.+...... .+|+.. ...+. .+.+.. ...|+--+..+|+..++.
T Consensus 205 knl~iA~ATl~~NlAv~~~~~~---------------~~~~~~~ll~~l~-~il~~~--~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 205 KNIHIALATLALNYSVCFHKDH---------------NIEGKAQCLSLIS-TILEVV--QDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC---------------CHHHHHHHHHHHH-HHHTTC--CCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhhcC---------------CchHHHHHHHHHH-HHHhcc--CCHHHHHHHHHHHHHHHh
Confidence 9999999999998887655321 223222 11222 233332 456888888888888874
No 108
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=45.85 E-value=3.4e+02 Score=30.16 Aligned_cols=150 Identities=11% Similarity=0.051 Sum_probs=93.4
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCc--chh---HHhHHHHHHhhhcCCCC-C-hHhHHHHHHHHHHHHH--
Q 001368 65 CEDALYSLLILGARRPVRHLASVAMGRIISKGDN--ISV---YSRVSSLQGFLSDGKKS-E-PQKVAGAAQCLGELYR-- 135 (1091)
Q Consensus 65 l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~--~~l---fdtvn~l~~iL~~~K~~-s-p~~~~aA~~cLG~l~~-- 135 (1091)
....|.++|..+..+.+++.++.+|..|=...|. ..+ -..+..|.++|+.+++. + .-+. .|+.+|..+-.
T Consensus 171 ~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~-~A~~aL~nLs~~~ 249 (354)
T 3nmw_A 171 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE-SGGGILRNVSSLI 249 (354)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHH-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHH-HHHHHHHHHHhhc
Confidence 4566777666666677888888888887653322 222 23567777888633322 1 1222 35555554431
Q ss_pred ---HHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH----HHHHhccCcchHHHH
Q 001368 136 ---QFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRL----IMRFAIVDKSFVVRI 208 (1091)
Q Consensus 136 ---~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~----~~r~~~~Dks~~Vr~ 208 (1091)
.-++..+.-. ..+..+++++++....++.++..+|..+..+ ++.....+.+. ..-..+.+++..||.
T Consensus 250 a~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-----~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~ 323 (354)
T 3nmw_A 250 ATNEDHRQILREN-NCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-----NPKDQEALWDMGAVSMLKNLIHSKHKMIAM 323 (354)
T ss_dssp TTCHHHHHHHHTT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-----CHHHHHHHHHTTHHHHHHTTTTCSSHHHHH
T ss_pred cCCHHHHHHHHHc-CCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-----CHHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 2334433322 2577889999988888999999999998542 12223333332 233346678889999
Q ss_pred HHHHHHHHHHhhc
Q 001368 209 AGARCLKAFAHIG 221 (1091)
Q Consensus 209 aAa~cL~~l~~~~ 221 (1091)
.|+..|..|....
T Consensus 324 ~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 324 GSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999875
No 109
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=45.43 E-value=1.3e+02 Score=36.55 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=70.4
Q ss_pred hHHHHHhHHhhhcccCcc-----chhhHHHHHHHhhcCCChHHHHHHHHHHHHHHccCch--h-hhhhchHHHHHHhhcc
Q 001368 987 KWSVRFTQQLVLFAPQAV-----SVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPD--S-VIEERIEGNLFHMLDE 1058 (1091)
Q Consensus 987 ~eai~clQqL~lFAP~~v-----~~~~lV~~L~~~L~S~~~~Lr~aAv~cLrqL~qr~a~--~-v~~~~le~~Lf~~LD~ 1058 (1091)
.-++.||..|..--|..+ +-+.=+++|...|.+++-.+|..|+..|-+|.+.++. . |.-+|--+.||..++.
T Consensus 140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~ 219 (651)
T 3grl_A 140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE 219 (651)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence 667777777766666632 2233479999999999999999999999999998773 2 3335888999999999
Q ss_pred CCCHHHHHH-----HHHHhhhhcc--cccccccccccC
Q 001368 1059 ETDSEYVKS-----YTLCLAYFSS--FYAFYLENEYLP 1089 (1091)
Q Consensus 1059 e~d~~l~~~-----~~~~~~~~~~--~~~~~~~~~~~~ 1089 (1091)
|...++-.. ..+.++...| |-.|..|.-++|
T Consensus 220 Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~ 257 (651)
T 3grl_A 220 EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQ 257 (651)
T ss_dssp HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGG
T ss_pred cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHH
Confidence 986433222 2233333333 556666655544
No 110
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=44.20 E-value=1.1e+02 Score=29.97 Aligned_cols=87 Identities=17% Similarity=0.088 Sum_probs=60.9
Q ss_pred HHHHHHHhhHHhhc----HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH--HHHHhc-----
Q 001368 131 GELYRQFGRRITSG----LLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRL--IMRFAI----- 199 (1091)
Q Consensus 131 G~l~~~~G~~l~s~----~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~--~~r~~~----- 199 (1091)
|.+|+...++.... +.++...++|-++.......+-+|+.|.-+++ -| .+.+.+++-+. +.|.+.
T Consensus 29 gylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~-~G---s~~f~~~~r~~~~~Ik~l~~F~g~ 104 (140)
T 1vdy_A 29 VYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVG-KS---GSEFRREMQRNSVAVRNLFHYKGH 104 (140)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTT-TS---CHHHHHHHHHTTHHHHTTTTCCCC
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHH-hC---CHHHHHHHHHhHHHHHHHHhcCCC
Confidence 45666666665443 57899999999988777788999999999875 23 25555555543 233331
Q ss_pred ------cCcchHHHHHHHHHHHHHHhhc
Q 001368 200 ------VDKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 200 ------~Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
.|....||..|-+++..|+...
T Consensus 105 ~dp~~G~d~g~~VR~~AkEl~~ll~d~~ 132 (140)
T 1vdy_A 105 PDPLKGDALNKAVRETAHETISAIFSEE 132 (140)
T ss_dssp CCTTTSSCHHHHHHHHHHHHHHHHTCCS
T ss_pred CCcccccchhHHHHHHHHHHHHHHhCcC
Confidence 1345899999999999988764
No 111
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=41.42 E-value=27 Score=40.98 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=47.1
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCchhh-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 001368 392 SPFMKIAALRTLSYTLKTLGEVPSEF-KEVLDSTVVAAVSHSSQLVRIEAALTLRALAE 449 (1091)
Q Consensus 392 s~~~lv~aL~el~~Ll~~LGsa~~~~-~~~l~d~l~~ll~hps~svRi~AA~cLr~~~~ 449 (1091)
++.++.+|+.-+|.+++-....-..+ .-+.++.+++++.||+..||.+|-.|+..+..
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 56688899999999999765433322 23589999999999999999999999988764
No 112
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=35.55 E-value=5.1e+02 Score=28.93 Aligned_cols=143 Identities=15% Similarity=0.102 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhccCcHH------HHHHH-HHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 001368 145 LLETTIIAAKLMKFNEEF------VRQEA-LLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAF 217 (1091)
Q Consensus 145 ~~e~~~~llK~lK~~~a~------~R~~~-l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l 217 (1091)
.+++...+++.+.+.+.. +|-++ ...+.+++--. + .+|| .++. ....++.|-.=|...+..+
T Consensus 123 ~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~~iL~~-----~----~f~~-fF~y-v~~~~FdiasDAf~Tfkel 191 (341)
T 1upk_A 123 QQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWS-----E----QFYD-FFRY-VEMSTFDIASDAFATFKDL 191 (341)
T ss_dssp CTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHHHHHS-----G----GGGH-HHHH-TTCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHHHHhcc-----H----HHHH-HHHH-hcCCCchHHHHHHHHHHHH
Confidence 577888888888875433 33222 23334433211 1 4566 4664 4568888888887777776
Q ss_pred Hhhc----CCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhh
Q 001368 218 AHIG----GPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLA 293 (1091)
Q Consensus 218 ~~~~----~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls 293 (1091)
...- +.| -..++|.+-.-+-|.++++||.||+-.=++||++|-...+. .+|.++.+
T Consensus 192 Lt~Hk~lvaef-L~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~-------------------~vM~~Yis 251 (341)
T 1upk_A 192 LTRHKLLSAEF-LEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNF-------------------TIMTKYIS 251 (341)
T ss_dssp HHSSHHHHHHH-HHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGH-------------------HHHHHHTT
T ss_pred HhccHHHHHHH-HHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHH-------------------HHHHHHhC
Confidence 5531 122 23577888888999999999999999999999999664432 33333333
Q ss_pred hh--------hcccCCCCcchhHHHHHHHHHHHHHH
Q 001368 294 LP--------FTRANGAKSKNMRVNLTLSWVYFLQA 321 (1091)
Q Consensus 294 ~~--------f~r~~~~~~r~~R~Gv~~ayv~fl~~ 321 (1091)
++ -+|. .++.++.--++.+..|+..
T Consensus 252 ~~~nLkl~M~LL~d---~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 252 KPENLKLMMNLLRD---KSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp CHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhcC---chhchhhhhhhheeeeeeC
Confidence 22 2233 4688888777777777763
No 113
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=32.73 E-value=25 Score=43.05 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=51.1
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q 001368 152 AAKLMKFNEEFVRQEALLLLQNALEGSGGSAA-ASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 152 llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~-~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
+++.+++.++..|..+..+|..++.+. +.. --.+.++...+++..++|.+..||.+|+.+|..|..+.
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~--~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDA--KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 556689888999999999999987521 111 11333444435677899999999999999999998874
No 114
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=32.47 E-value=8.8e+02 Score=30.76 Aligned_cols=213 Identities=11% Similarity=0.023 Sum_probs=120.2
Q ss_pred hhhHHHHHHHhcc-----CCChhHHHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCChHHHHHHHhhh--hhcccCCC
Q 001368 230 LDNSATHCVKAIE-----DPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLAL--PFTRANGA 302 (1091)
Q Consensus 230 lE~l~tl~~K~le-----~s~~~vR~a~A~~Lg~lLa~~~~~~~~~~~~~k~~~~~~k~~e~~l~~~Ls~--~f~r~~~~ 302 (1091)
+..+..+..+.++ .+.+.||..+-.++|..-- .. .. ...-++.++. .+.. ++..
T Consensus 488 lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~-~~-~~------------~~~~l~~~L~-~ll~~~gl~~---- 548 (980)
T 3ibv_A 488 PTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYAS-FF-DY------------ESAAIPALIE-YFVGPRGIHN---- 548 (980)
T ss_dssp BCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGG-GG-GT------------CCTTHHHHHH-HHTSTTTTTC----
T ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH-HH-hc------------CchhHHHHHH-HHhccccccC----
Confidence 3456667777665 5777888888888887331 11 11 0124566665 4444 3322
Q ss_pred CcchhHHHHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHhccC--C-C-cc----------------H--HHHHHHHH
Q 001368 303 KSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRAD--I-F-VD----------------S--HALACVLY 360 (1091)
Q Consensus 303 ~~r~~R~Gv~~ayv~fl~~lg~~~le~~~~~~~y~~~i~~ll~~~--~-~-~~----------------~--~~r~~v~~ 360 (1091)
.+.++|...+.+...|....+.. +.+ ....++..+.+++... + . .| . +.-.+|.+
T Consensus 549 ~~~~V~~~a~~af~~f~~~~~~~-L~~--~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~ 625 (980)
T 3ibv_A 549 TNERVRPRAWYLFYRFVKSIKKQ-VVN--YTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGV 625 (980)
T ss_dssp CCTTTHHHHHHHHHHHHHHTTTT-CSS--SHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHhhHH-hhh--HHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHH
Confidence 34789999999999999998763 322 1244444444444421 1 1 11 1 12266777
Q ss_pred HHHHhhhccCCcHHHHHHHHH----HHhhccc----CCC--Chh-HHHHHHHHHHHHHHHhCCCc---hhh---HHHHHH
Q 001368 361 ILRIGVTDQMTEPTQRSFLVF----LGKQLQA----VDA--SPF-MKIAALRTLSYTLKTLGEVP---SEF---KEVLDS 423 (1091)
Q Consensus 361 ILr~~i~~~LgE~~Q~~~~~~----l~~~~~~----~~~--s~~-~lv~aL~el~~Ll~~LGsa~---~~~---~~~l~d 423 (1091)
++... -..+..|.+.++. +.++++. ... .+. .+...+.+++.+-+...... .+. -..+.+
T Consensus 626 li~~~---~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~ 702 (980)
T 3ibv_A 626 LISSG---NLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASD 702 (980)
T ss_dssp HHHHS---CCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHH
T ss_pred HHhCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHH
Confidence 74321 1122344444444 4444442 111 111 12244555566555553321 123 334666
Q ss_pred HHHHHhc--CCchHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHH
Q 001368 424 TVVAAVS--HSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLN 467 (1091)
Q Consensus 424 ~l~~ll~--hps~svRi~AA~cLr~~~~a~P~~~~~ll~~~~~~L~ 467 (1091)
.++.++. ..+..||=++-.+++.+.......+.|+++..++.|-
T Consensus 703 ~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll 748 (980)
T 3ibv_A 703 EIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL 748 (980)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH
Confidence 6666676 4567899999999999998888889999998888775
No 115
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=31.67 E-value=1.4e+02 Score=36.29 Aligned_cols=185 Identities=11% Similarity=0.026 Sum_probs=92.7
Q ss_pred cCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcC-CCCChHhHHHHHHHHHHHHHHHhhHHhhcH--HHHHHH
Q 001368 75 LGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDG-KKSEPQKVAGAAQCLGELYRQFGRRITSGL--LETTII 151 (1091)
Q Consensus 75 ~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~-K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~--~e~~~~ 151 (1091)
.++-+-.|..++.+++.|-..-....++..=+....+|..- .|.++..+.+|+.+|+.+-..-|..+...+ .++...
T Consensus 44 ~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~ 123 (684)
T 4gmo_A 44 KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTA 123 (684)
T ss_dssp SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHH
Confidence 45677789999999999986444455555433344444321 266777777899999888655554432211 113333
Q ss_pred HHHHhcc--------------CcHHHH-------HHHHHHHHHHHhcCCCCCchhHH--HHHHHHHHHHhc-cC-cchHH
Q 001368 152 AAKLMKF--------------NEEFVR-------QEALLLLQNALEGSGGSAAASAY--SEAFRLIMRFAI-VD-KSFVV 206 (1091)
Q Consensus 152 llK~lK~--------------~~a~~R-------~~~l~~L~kil~g~g~~~~~~~~--~di~K~~~r~~~-~D-ks~~V 206 (1091)
++..+++ ....-| -.++.+|..+.++..... +.+. .-+-. .+.... .| -...|
T Consensus 124 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~-~~v~~~~~l~~-l~~~L~~~~~~~~~v 201 (684)
T 4gmo_A 124 IEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIH-EAVATKQTILR-LLFRLISADIAPQDI 201 (684)
T ss_dssp HHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHTCHHHHH-HHHHHHHHCCSCHHH
T ss_pred HHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-HHHHhcccHHH-HHHHHHhcCCCcHHH
Confidence 4444432 011111 124455555555433211 1111 11112 222211 23 45689
Q ss_pred HHHHHHHHHHHHhhcCCCc---ccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHHHh
Q 001368 207 RIAGARCLKAFAHIGGPCL---GVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLAL 262 (1091)
Q Consensus 207 r~aAa~cL~~l~~~~~~~~---~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~ 262 (1091)
+.+|++||..+......+. ..+..-.+..+.... ...+...|..++-.|..+...
T Consensus 202 ~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 202 YEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVFTS 259 (684)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHhhh
Confidence 9999999999877531221 111110122233322 233444566666666666543
No 116
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=31.67 E-value=7e+02 Score=29.32 Aligned_cols=136 Identities=14% Similarity=0.078 Sum_probs=94.0
Q ss_pred hHHHHHHhhhcCCCCChHhHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCc
Q 001368 104 RVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAA 183 (1091)
Q Consensus 104 tvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~ 183 (1091)
...+-..||.+.|.+.-.|+ -|..-+...|+.|- ++..+++.+.+.+....+.++|..+++.|-.++++ ...
T Consensus 27 ~~~~y~~Il~~~kg~~k~K~-LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i- 98 (507)
T 3u0r_A 27 HKDAYQVILDGVKGGTKEKR-LAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL- 98 (507)
T ss_dssp GHHHHHHHHHGGGSCHHHHH-HHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH-
T ss_pred cHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh-
Confidence 45566677765555434455 57777777777554 56788999999999999999999999999999987 222
Q ss_pred hhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 184 ASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 184 ~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
.=..||.=+ .++--....+.+.-++|.+|++.+ | ....+-.|+-+..++..+|.-+=+-|..-+
T Consensus 99 -~kiaDvL~Q----lLqtdd~~E~~~V~~sL~sllk~D-p-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 99 -PRVADILTQ----LLQTDDSAEFNLVNNALLSIFKMD-A-------KGTLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp -HHHHHHHHH----HTTCCCHHHHHHHHHHHHHHHHHC-H-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred -hhHHHHHHH----HHhccchHHHHHHHHHHHHHHhcC-h-------HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 235566655 233333334444567888888875 2 445666677777778899987666666544
No 117
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=31.37 E-value=4.3e+02 Score=27.10 Aligned_cols=175 Identities=10% Similarity=-0.079 Sum_probs=100.0
Q ss_pred CChhhHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHH
Q 001368 53 EPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGE 132 (1091)
Q Consensus 53 ~~k~di~~~Q~~l~~~L~~~l~~~~g~P~R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~ 132 (1091)
.|++.....+++....- -..|.+-|.|+-+++=+..-.. +.+ .-+..+.+..+.. ...-+.+..|+-+++.
T Consensus 11 ~d~~~a~~~~~y~k~~~---~flGV~~P~lR~laK~~~k~~~-~~~--~~~~~~~~~~L~~---s~~~E~r~la~~~l~~ 81 (220)
T 2b6c_A 11 KNPETAAKMSAYMKHQF---VFAGIPAPERQALSKQLLKESH-TWP--KEKLCQEIEAYYQ---KTEREYQYVAIDLALQ 81 (220)
T ss_dssp CCHHHHHHHHHHTTTSS---CCCCCCHHHHHHHTHHHHHHHT-TSC--HHHHHHHHHHHHT---SSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCC---eeeCCChHHHHHHHHHHHHHhc-cCc--ccchHHHHHHHHc---CchhHHHHHHHHHHHH
Confidence 34444555555554331 2366888888888887664321 111 1112234445453 1234445567777775
Q ss_pred HHHHHhhHHhhcHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHH
Q 001368 133 LYRQFGRRITSGLLETTIIAAKLM--KFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAG 210 (1091)
Q Consensus 133 l~~~~G~~l~s~~~e~~~~llK~l--K~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aA 210 (1091)
..+. ..++....+-+.+ ++|=+.+=.-+ ..+.+.+.. -++.+...+.+ -..|...-+|++|
T Consensus 82 ~~~~-------~~~~~l~~~~~~l~~~~nWd~~D~~a-~~~~~~~~~----~~~~~~~~i~~-----W~~s~~~w~rR~a 144 (220)
T 2b6c_A 82 NVQR-------FSLEEVVAFKAYVPQKAWWDSVDAWR-KFFGSWVAL----HLTELPTIFAL-----FYGAENFWNRRVA 144 (220)
T ss_dssp TGGG-------CCHHHHHHGGGGTTTTCSHHHHHHHH-HHHHHHHHH----SGGGHHHHHHH-----HTTCSSHHHHHHH
T ss_pred HHhh-------CCHHHHHHHHHHhccCCcHHHHHHHH-HHHHHHHHH----ChHHHHHHHHH-----HHcCCCHHHHHHH
Confidence 5422 1233333334444 33434443323 445555542 11222222333 3667888889888
Q ss_pred HHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 211 ARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 211 a~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
+.++. ++...+|.+.+..+|-..+.++.+-||.|+|=.|.++.
T Consensus 145 i~~~l-------~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~ 187 (220)
T 2b6c_A 145 LNLQL-------MLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYS 187 (220)
T ss_dssp HHTTT-------TCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHH-------HHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 87652 34455778888999999999999999999999998866
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=30.32 E-value=6.4e+02 Score=28.60 Aligned_cols=160 Identities=11% Similarity=0.080 Sum_probs=101.8
Q ss_pred hcCCcchhHHhHHHHHHhhhcCCCCChHhHHHHHHHHHHHHH-HHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 001368 94 SKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYR-QFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQ 172 (1091)
Q Consensus 94 ~~GD~~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG~l~~-~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~ 172 (1091)
-+||+.+--|+|-++.+=-+. ..+.+| +..|-++.| .+.+.- +++++.+.-++-.--..+..+|.-+...++
T Consensus 16 ~~~~~~~~~~~v~~lln~A~~--~~~~~K----l~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~Fie 88 (386)
T 3o2t_A 16 PRGSHMTTSERVVDLLNQAAL--ITNDSK----ITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIE 88 (386)
T ss_dssp -----CCHHHHHHHHHHHHHH--CCSTHH----HHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHhhhc--cChHHH----HHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 356777777755444442221 122233 366777777 343333 566776666776655567889999999999
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCc--ccc-------hhh---hHHHHHHHh
Q 001368 173 NALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCL--GVG-------ELD---NSATHCVKA 240 (1091)
Q Consensus 173 kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~--~~~-------dlE---~l~tl~~K~ 240 (1091)
.++.. +....-++.- ..+.-+.|.+..|...++.|...+++..-.++ +.+ -.| .+++-++..
T Consensus 89 Ea~~~-----~~el~~~~l~-~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~ 162 (386)
T 3o2t_A 89 EACKR-----DIELLLKLIA-NLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILL 162 (386)
T ss_dssp HHHHH-----CGGGHHHHHH-HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHH-----HHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 98862 2334455555 46666789999999999999988886531111 111 122 567778888
Q ss_pred ccCCChhHHHHHHHHHHHHHHhccCCC
Q 001368 241 IEDPIASVRDAFAEALGSLLALGMNPQ 267 (1091)
Q Consensus 241 le~s~~~vR~a~A~~Lg~lLa~~~~~~ 267 (1091)
+++.|.-||.++.|.+-.+. ..|+++
T Consensus 163 ~ds~n~GVrl~aiKFle~VI-l~qS~~ 188 (386)
T 3o2t_A 163 LDSDNDGIRTHAIKFVEGLI-VTLSPR 188 (386)
T ss_dssp GGCSSHHHHHHHHHHHHHHH-HHTSCC
T ss_pred hccCCcchHHHHHHHHHHHH-HHhCCC
Confidence 99999999999999998877 556643
No 119
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=29.82 E-value=54 Score=38.51 Aligned_cols=74 Identities=16% Similarity=0.116 Sum_probs=50.4
Q ss_pred HHhHHHHHHhhhcC-------CCCChHhHHHHHHHHHHHHHHHhh--HHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 001368 102 YSRVSSLQGFLSDG-------KKSEPQKVAGAAQCLGELYRQFGR--RITSGLLETTIIAAKLMKFNEEFVRQEALLLLQ 172 (1091)
Q Consensus 102 fdtvn~l~~iL~~~-------K~~sp~~~~aA~~cLG~l~~~~G~--~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~ 172 (1091)
|+-+..|.++|+.. ...+|...+-|++=+|+.-+.+.+ .+...+. .=..++++|....+.+|++|+++++
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg-~K~~VM~Lm~h~d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTG-GKADIMELLNHSDSRVKYEALKATQ 472 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHS-HHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcC-cHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 55666888888621 123577777788999999887644 4433222 2334455565567899999999999
Q ss_pred HHHh
Q 001368 173 NALE 176 (1091)
Q Consensus 173 kil~ 176 (1091)
|++.
T Consensus 473 klm~ 476 (480)
T 1ho8_A 473 AIIG 476 (480)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 120
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=29.03 E-value=1e+03 Score=30.55 Aligned_cols=148 Identities=10% Similarity=0.047 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhc---C-----CCchhhHHHHHHHHHHhhcC--Cc-chhHHhHHHHHHhhhcCCCCChHhHHHHHHHHH
Q 001368 63 RKCEDALYSLLIL---G-----ARRPVRHLASVAMGRIISKG--DN-ISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLG 131 (1091)
Q Consensus 63 ~~l~~~L~~~l~~---~-----~g~P~R~l~a~cla~l~~~G--D~-~~lfdtvn~l~~iL~~~K~~sp~~~~aA~~cLG 131 (1091)
..+++.|++.+.. + +.|+.|+=++.+++.++... +. ...++ ++...++ .++......+.+|.
T Consensus 102 ~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~---dLv~~~~----~~~~~~~~~L~IL~ 174 (1073)
T 3gjx_A 102 EGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFIS---DIVGASR----TSESLCQNNMVILK 174 (1073)
T ss_dssp HHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHH---HHHHHHH----HCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHH---HHHHHhC----CCHHHHHHHHHHHH
Confidence 3466666666653 2 24677999999999999873 22 22222 4444443 13444446788888
Q ss_pred HHHHHHhh----------------HHhhcHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 001368 132 ELYRQFGR----------------RITSGLLETTIIAAKLMKF-NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLI 194 (1091)
Q Consensus 132 ~l~~~~G~----------------~l~s~~~e~~~~llK~lK~-~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~ 194 (1091)
.+-+..++ .+...++.++..+.+.+.+ .++.+...++.++++.+.=+--+. -+-.++....
T Consensus 175 ~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~--i~~~~ll~~L 252 (1073)
T 3gjx_A 175 LLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY--IFETKLISTL 252 (1073)
T ss_dssp HHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH--HHSSSHHHHH
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHH--hccchHHHHH
Confidence 88887443 3455567777777777754 456777788888888776553111 1112233322
Q ss_pred HHHhccCcchHHHHHHHHHHHHHHhhc
Q 001368 195 MRFAIVDKSFVVRIAGARCLKAFAHIG 221 (1091)
Q Consensus 195 ~r~~~~Dks~~Vr~aAa~cL~~l~~~~ 221 (1091)
.-..++ +..+|.+|++||.+++...
T Consensus 253 ~~~~L~--~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 253 IYKFLN--VPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp HHHTSS--SHHHHHHHHHHHHHHHHSC
T ss_pred HHHhcC--ChHHHHHHHHHHHHHHhcc
Confidence 111243 3468999999999998863
No 121
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=26.92 E-value=5e+02 Score=33.32 Aligned_cols=113 Identities=16% Similarity=0.102 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHHhhHHhhcHHHHHHHHHHHhcc-------CcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 001368 122 KVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF-------NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLI 194 (1091)
Q Consensus 122 ~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~-------~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~ 194 (1091)
....++.+|| .+| +++++..+.|.+.. .+.-+|.+|+.+|+++-. .. +...++++-.+
T Consensus 456 ~~~~~LkaLG--------N~g--~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~----~~-p~~v~~il~~i 520 (1056)
T 1lsh_A 456 EIVLALKALG--------NAG--QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK----RD-PRKVQEIVLPI 520 (1056)
T ss_dssp HHHHHHHHHH--------HHT--CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG----TC-HHHHHHHHHHH
T ss_pred HHHHHHHHhh--------ccC--ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh----hc-hHHHHHHHHHH
Confidence 3346777777 444 35677778888742 134588889999888653 22 33344444333
Q ss_pred HHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001368 195 MRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLL 260 (1091)
Q Consensus 195 ~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~tl~~K~le~s~~~vR~a~A~~Lg~lL 260 (1091)
++. .+....||+||+..| .... .+...+..+....-.++|.+|+..+-..|-.+.
T Consensus 521 ~~n--~~e~~EvRiaA~~~L---m~t~------P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla 575 (1056)
T 1lsh_A 521 FLN--VAIKSELRIRSCIVF---FESK------PSVALVSMVAVRLRREPNLQVASFVYSQMRSLS 575 (1056)
T ss_dssp HHC--TTSCHHHHHHHHHHH---HHTC------CCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hcC--CCCChHHHHHHHHHH---HHHC------cCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 332 346789999998655 2221 112234444444445588888888888887765
No 122
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=24.85 E-value=6.5e+02 Score=26.77 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=95.1
Q ss_pred HHHHHHHHH-HHhhHHhhcHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhccCcchH
Q 001368 127 AQCLGELYR-QFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFV 205 (1091)
Q Consensus 127 ~~cLG~l~~-~~G~~l~s~~~e~~~~llK~lK~~~a~~R~~~l~~L~kil~g~g~~~~~~~~~di~K~~~r~~~~Dks~~ 205 (1091)
+..|-++.| .+.+. -+++++.+.-++-..-.++..+|.-+..-++.+++. ++....+..- ..+.-+.|.+..
T Consensus 33 l~~L~qa~el~~~~d-p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-----k~~l~~~~l~-~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 33 CELLAKVQETVLGSC-AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-----KVELLPHVIN-VVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHTTTT-GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHH-HHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHccC-HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-----HHHHHHHHHH-HHHHHHcCCCHH
Confidence 366777777 34333 358888888888866556788999999999998842 3456666666 466668899999
Q ss_pred HHHHHHHHHHHHHhhcCCCc--ccc-------h---hhhHHHHHHHhccCCChhHHHHHHHHHHHHHHhccCC
Q 001368 206 VRIAGARCLKAFAHIGGPCL--GVG-------E---LDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNP 266 (1091)
Q Consensus 206 Vr~aAa~cL~~l~~~~~~~~--~~~-------d---lE~l~tl~~K~le~s~~~vR~a~A~~Lg~lLa~~~~~ 266 (1091)
|..-++.|...+++..-.++ +.+ - +-.+++-++..+++.|.-||.++-|.+-.+. ..|++
T Consensus 106 V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI-l~qT~ 177 (257)
T 3gs3_A 106 VIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV-VLQSF 177 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH-HHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH-HhhcC
Confidence 99999999988887530111 211 1 2257778888899999999999999998866 44543
No 123
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=24.42 E-value=12 Score=36.09 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCcchhhHHH
Q 001368 421 LDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLIT 460 (1091)
Q Consensus 421 l~d~l~~ll~hps~svRi~AA~cLr~~~~a~P~~~~~ll~ 460 (1091)
-++.|+.++.||+..||..||.-.-.+. |....++|.
T Consensus 58 ~R~aLl~Ll~H~n~~VRl~AA~~~L~~~---p~~A~~vLe 94 (123)
T 2i9c_A 58 QRTALLSLFEYPNMQVRLQAAKLTLAVA---PVKAREQLE 94 (123)
T ss_dssp GGGGGGGGGGSSCHHHHHHHHHTTTTTC---HHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHhhC---hHHHHHHHH
Confidence 3678999999999999999993322222 554444443
No 124
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=22.23 E-value=5.1e+02 Score=26.57 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=59.3
Q ss_pred CchHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHhhcC-CCc-hhhHHHHHHHHHHhhc-CC--cchhHHhHHHHH
Q 001368 35 DPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILG-ARR-PVRHLASVAMGRIISK-GD--NISVYSRVSSLQ 109 (1091)
Q Consensus 35 ~~~~~f~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~~l~~~-~g~-P~R~l~a~cla~l~~~-GD--~~~lfdtvn~l~ 109 (1091)
+....+.++=.+.+.|..=+.=.+...-..+...+...+... -++ ..|...|+.++.|..+ |+ +..-=.-+++|.
T Consensus 58 ~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~ 137 (196)
T 4atg_A 58 KEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLK 137 (196)
T ss_dssp TCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHH
Confidence 345555555444555444444456666666666666666543 222 5799999999999886 44 322233345667
Q ss_pred HhhhcCCCCChHhHHHHHHHHHH
Q 001368 110 GFLSDGKKSEPQKVAGAAQCLGE 132 (1091)
Q Consensus 110 ~iL~~~K~~sp~~~~aA~~cLG~ 132 (1091)
+.+.+. +.+.....+|+.+|.+
T Consensus 138 k~l~dp-~~~l~t~YGAi~GL~~ 159 (196)
T 4atg_A 138 GVWMDP-NRSEDSQYGALYCLSI 159 (196)
T ss_dssp HHHTCT-TSCHHHHHHHHHHHHH
T ss_pred HHHcCC-CCChHHHHHHHHHHHH
Confidence 666533 3466666799998873
No 125
>2kzs_A Death-associated protein 6; helical bundle,DHB domain, FAS death-domain associated prote rassf1C interacting domain, apoptosis; NMR {Homo sapiens} PDB: 2kzu_A
Probab=22.06 E-value=99 Score=27.86 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhhcCCcchhHHhHHHHHHhhhc
Q 001368 82 RHLASVAMGRIISKGDNISVYSRVSSLQGFLSD 114 (1091)
Q Consensus 82 R~l~a~cla~l~~~GD~~~lfdtvn~l~~iL~~ 114 (1091)
||.++|||.+.=.++ ..+|=-||+|..+|+.
T Consensus 56 ~n~L~rcL~Raq~~~--sK~yVYINELCTvLka 86 (94)
T 2kzs_A 56 CNILSRVLSRARSRP--AKLYVYINELCTVLKA 86 (94)
T ss_dssp HHHHHHHHHHHHHCS--STHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--cceEEehHHHHHHHHH
Confidence 999999999999887 6788889999999983
Done!