Query 001369
Match_columns 1091
No_of_seqs 406 out of 1902
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 23:03:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02436 cellulose synthase A 100.0 0E+00 0E+00 2889.7 79.6 1088 1-1091 1-1094(1094)
2 PLN02400 cellulose synthase 100.0 1E-323 0E+00 2871.0 79.0 1072 1-1090 1-1085(1085)
3 PLN02638 cellulose synthase A 100.0 7E-312 2E-316 2767.2 78.5 1057 22-1090 3-1079(1079)
4 PLN02189 cellulose synthase 100.0 7E-304 1E-308 2691.5 79.6 1031 1-1090 1-1040(1040)
5 PLN02915 cellulose synthase A 100.0 3E-302 7E-307 2677.6 74.2 1007 31-1090 10-1044(1044)
6 PLN02195 cellulose synthase A 100.0 5E-284 1E-288 2508.5 74.6 971 33-1090 3-977 (977)
7 PLN02248 cellulose synthase-li 100.0 3E-253 7E-258 2253.3 69.9 949 4-1078 89-1125(1135)
8 PF03552 Cellulose_synt: Cellu 100.0 2E-219 5E-224 1914.2 43.3 717 362-1084 1-720 (720)
9 PLN02190 cellulose synthase-li 100.0 1E-201 3E-206 1766.3 57.9 725 264-1070 7-756 (756)
10 PLN02893 Cellulose synthase-li 100.0 4E-192 8E-197 1694.9 61.0 706 263-1068 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 2E-65 4.4E-70 625.0 44.6 491 283-1044 57-561 (713)
12 PRK11498 bcsA cellulose syntha 100.0 5.2E-65 1.1E-69 622.6 41.7 472 285-1043 189-673 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 1.3E-44 2.7E-49 319.3 4.4 80 28-107 1-80 (80)
14 PRK05454 glucosyltransferase M 100.0 2.3E-35 5E-40 357.7 38.3 355 282-882 41-413 (691)
15 cd04191 Glucan_BSP_ModH Glucan 100.0 3.2E-33 7E-38 304.2 21.8 182 527-840 67-253 (254)
16 COG1215 Glycosyltransferases, 100.0 9.4E-30 2E-34 291.4 27.8 233 359-844 53-290 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 5.5E-28 1.2E-32 281.5 30.5 230 357-845 72-307 (444)
18 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 9E-27 2E-31 271.3 29.9 124 735-896 217-341 (439)
19 PRK11204 N-glycosyltransferase 100.0 1.7E-26 3.7E-31 265.6 30.5 231 356-845 50-286 (420)
20 PRK14716 bacteriophage N4 adso 99.9 3.9E-24 8.5E-29 252.5 27.1 263 358-868 64-353 (504)
21 cd06421 CESA_CelA_like CESA_Ce 99.9 2.6E-24 5.6E-29 224.6 19.6 229 360-842 1-234 (234)
22 cd06437 CESA_CaSu_A2 Cellulose 99.9 9.2E-24 2E-28 222.7 21.1 228 360-838 1-232 (232)
23 PRK11234 nfrB bacteriophage N4 99.9 3.2E-23 7E-28 253.4 25.7 171 543-844 132-335 (727)
24 cd06435 CESA_NdvC_like NdvC_li 99.9 2.1E-22 4.6E-27 211.9 21.7 174 528-844 57-234 (236)
25 cd06427 CESA_like_2 CESA_like_ 99.9 1.8E-22 3.9E-27 215.0 20.2 233 360-844 1-236 (241)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 1.5E-22 3.3E-27 211.6 8.9 224 360-837 1-228 (228)
27 cd04190 Chitin_synth_C C-termi 99.8 3.3E-20 7E-25 199.5 11.8 52 787-840 190-243 (244)
28 TIGR03472 HpnI hopanoid biosyn 99.8 9.1E-19 2E-23 200.1 21.2 234 357-837 38-271 (373)
29 cd04192 GT_2_like_e Subfamily 99.8 8.4E-19 1.8E-23 181.9 16.8 171 528-837 56-229 (229)
30 PRK15489 nfrB bacteriophage N4 99.8 6E-18 1.3E-22 205.7 26.1 171 543-843 140-342 (703)
31 cd02520 Glucosylceramide_synth 99.8 4E-18 8.6E-23 176.3 17.2 135 529-836 60-194 (196)
32 cd06434 GT2_HAS Hyaluronan syn 99.7 2.6E-17 5.6E-22 172.7 17.3 58 543-609 63-120 (235)
33 COG2943 MdoH Membrane glycosyl 99.7 4.2E-15 9.2E-20 170.6 34.4 220 528-882 213-433 (736)
34 cd06439 CESA_like_1 CESA_like_ 99.7 1.5E-16 3.3E-21 169.1 19.5 127 356-608 25-151 (251)
35 TIGR03469 HonB hopene-associat 99.7 2.3E-15 5E-20 173.0 22.0 133 356-602 36-169 (384)
36 cd02525 Succinoglycan_BP_ExoA 99.6 1.4E-14 3.1E-19 152.2 19.7 54 789-844 180-233 (249)
37 PF13632 Glyco_trans_2_3: Glyc 99.6 3.1E-15 6.6E-20 153.8 11.3 138 564-838 1-143 (193)
38 cd06436 GlcNAc-1-P_transferase 99.5 3.6E-13 7.8E-18 139.5 12.6 115 528-649 51-175 (191)
39 cd06438 EpsO_like EpsO protein 99.3 5.3E-12 1.2E-16 129.2 11.1 102 542-649 61-167 (183)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.3 2.5E-11 5.5E-16 124.4 16.0 64 528-605 59-123 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.3 8.2E-11 1.8E-15 120.8 16.4 65 529-607 57-122 (201)
42 PF13506 Glyco_transf_21: Glyc 99.2 9.1E-11 2E-15 121.9 10.4 60 542-609 15-74 (175)
43 cd06433 GT_2_WfgS_like WfgS an 99.1 1.5E-09 3.2E-14 109.8 15.3 54 544-606 62-116 (202)
44 PF14570 zf-RING_4: RING/Ubox 99.1 4.2E-11 9.2E-16 99.2 2.7 48 39-89 1-48 (48)
45 cd04196 GT_2_like_d Subfamily 99.0 3.7E-09 8E-14 108.8 15.0 64 529-606 56-120 (214)
46 cd02510 pp-GalNAc-T pp-GalNAc- 99.0 1.2E-08 2.5E-13 113.1 18.9 109 364-589 2-110 (299)
47 cd06420 GT2_Chondriotin_Pol_N 99.0 1.8E-08 3.9E-13 101.7 16.6 41 544-590 66-106 (182)
48 cd02522 GT_2_like_a GT_2_like_ 99.0 1.6E-08 3.5E-13 105.2 16.6 40 362-407 1-40 (221)
49 cd04186 GT_2_like_c Subfamily 99.0 1.2E-08 2.7E-13 100.0 14.9 50 544-602 61-111 (166)
50 PF03142 Chitin_synth_2: Chiti 98.9 2.1E-07 4.6E-12 111.2 24.2 54 788-843 324-379 (527)
51 cd02526 GT2_RfbF_like RfbF is 98.9 2.2E-08 4.7E-13 105.5 13.6 66 528-605 48-117 (237)
52 PLN02726 dolichyl-phosphate be 98.9 6.5E-08 1.4E-12 104.0 17.2 61 528-602 69-129 (243)
53 cd04185 GT_2_like_b Subfamily 98.9 6.1E-08 1.3E-12 100.0 16.2 65 529-605 53-117 (202)
54 PF00535 Glycos_transf_2: Glyc 98.9 4.3E-09 9.3E-14 102.4 7.2 111 528-650 54-166 (169)
55 cd06913 beta3GnTL1_like Beta 1 98.8 9.2E-08 2E-12 100.5 15.4 41 364-409 1-41 (219)
56 cd06423 CESA_like CESA_like is 98.8 6.4E-08 1.4E-12 93.9 11.9 108 529-650 55-167 (180)
57 cd06442 DPM1_like DPM1_like re 98.7 2.1E-07 4.5E-12 97.1 14.7 61 528-602 54-114 (224)
58 cd04188 DPG_synthase DPG_synth 98.5 1.3E-06 2.7E-11 91.4 13.9 61 529-603 59-119 (211)
59 PRK10073 putative glycosyl tra 98.5 1.8E-06 3.9E-11 98.2 16.0 110 358-590 4-113 (328)
60 TIGR01556 rhamnosyltran L-rham 98.4 3.9E-06 8.4E-11 92.1 16.0 68 528-605 46-113 (281)
61 cd04179 DPM_DPG-synthase_like 98.4 1.5E-06 3.2E-11 87.9 11.7 65 529-607 56-120 (185)
62 PRK10018 putative glycosyl tra 98.4 9.2E-06 2E-10 90.7 17.1 53 527-589 60-112 (279)
63 PRK10063 putative glycosyl tra 98.3 2.3E-05 5E-10 85.8 17.6 46 360-409 1-47 (248)
64 cd04187 DPM1_like_bac Bacteria 98.2 8.2E-06 1.8E-10 83.0 11.5 105 528-650 56-160 (181)
65 cd00761 Glyco_tranf_GTA_type G 98.2 3.1E-05 6.6E-10 73.4 13.6 52 542-602 62-114 (156)
66 COG1216 Predicted glycosyltran 98.1 6.1E-05 1.3E-09 84.5 16.7 69 527-607 56-126 (305)
67 KOG2571 Chitin synthase/hyalur 98.1 1.2E-05 2.6E-10 99.9 11.4 50 788-839 549-598 (862)
68 PF10111 Glyco_tranf_2_2: Glyc 98.1 8.6E-05 1.9E-09 82.5 16.9 61 544-610 75-135 (281)
69 PTZ00260 dolichyl-phosphate be 98.0 0.00011 2.3E-09 84.1 16.3 41 544-589 149-189 (333)
70 PRK13915 putative glucosyl-3-p 97.9 7.3E-05 1.6E-09 84.6 11.4 51 543-601 101-152 (306)
71 PRK10714 undecaprenyl phosphat 97.2 0.0029 6.3E-08 72.2 13.1 40 544-588 77-116 (325)
72 KOG2547 Ceramide glucosyltrans 96.9 0.011 2.3E-07 68.1 13.1 159 542-836 155-314 (431)
73 COG5175 MOT2 Transcriptional r 96.8 0.00055 1.2E-08 76.7 2.2 48 38-88 16-63 (480)
74 COG0463 WcaA Glycosyltransfera 96.6 0.017 3.7E-07 55.5 10.7 43 359-407 2-44 (291)
75 cd02511 Beta4Glucosyltransfera 96.5 0.02 4.3E-07 61.5 11.1 41 545-590 59-99 (229)
76 TIGR00570 cdk7 CDK-activating 95.3 0.018 3.9E-07 65.4 4.5 59 35-95 2-60 (309)
77 PF14446 Prok-RING_1: Prokaryo 94.5 0.021 4.6E-07 49.2 1.9 45 36-88 5-51 (54)
78 cd02514 GT13_GLCNAC-TI GT13_GL 94.0 0.64 1.4E-05 53.9 13.0 41 363-407 3-43 (334)
79 PF02364 Glucan_synthase: 1,3- 92.0 1.3 2.8E-05 56.4 12.5 100 731-865 381-481 (817)
80 PF05290 Baculo_IE-1: Baculovi 88.5 0.29 6.2E-06 49.5 2.2 52 37-92 81-135 (140)
81 cd00162 RING RING-finger (Real 88.4 0.44 9.5E-06 37.2 2.9 44 38-87 1-44 (45)
82 KOG2978 Dolichol-phosphate man 84.2 5.4 0.00012 43.0 9.0 52 528-589 64-115 (238)
83 smart00504 Ubox Modified RING 79.4 1.9 4.1E-05 37.1 3.1 44 38-89 3-46 (63)
84 PRK14559 putative protein seri 74.6 1.2 2.7E-05 55.8 0.8 24 66-90 30-53 (645)
85 PHA02929 N1R/p28-like protein; 74.0 3.5 7.5E-05 45.9 4.0 55 34-89 172-227 (238)
86 KOG0823 Predicted E3 ubiquitin 73.9 2.7 5.9E-05 46.2 3.1 45 36-88 47-94 (230)
87 PHA02862 5L protein; Provision 73.4 1.9 4.1E-05 44.4 1.7 50 36-91 2-55 (156)
88 smart00659 RPOLCX RNA polymera 72.0 2.2 4.7E-05 35.6 1.4 26 38-65 4-29 (44)
89 PF13639 zf-RING_2: Ring finge 72.0 2.6 5.6E-05 34.3 1.9 43 38-85 2-44 (44)
90 PF03604 DNA_RNApol_7kD: DNA d 71.2 2.8 6E-05 32.8 1.8 26 38-65 2-27 (32)
91 PF14447 Prok-RING_4: Prokaryo 70.3 1.8 3.8E-05 37.8 0.5 46 36-91 7-52 (55)
92 PLN03208 E3 ubiquitin-protein 70.0 4 8.6E-05 44.1 3.3 53 30-89 12-79 (193)
93 PHA02825 LAP/PHD finger-like p 69.8 3.6 7.7E-05 43.1 2.7 51 35-91 7-61 (162)
94 KOG2068 MOT2 transcription fac 67.4 3.9 8.4E-05 47.2 2.7 52 36-91 249-300 (327)
95 KOG2932 E3 ubiquitin ligase in 65.2 3.8 8.3E-05 46.7 2.1 44 49-92 84-137 (389)
96 KOG3800 Predicted E3 ubiquitin 64.3 5 0.00011 45.6 2.7 53 37-91 1-53 (300)
97 smart00184 RING Ring finger. E 64.0 6.3 0.00014 29.4 2.5 39 39-84 1-39 (39)
98 KOG2977 Glycosyltransferase [G 63.2 50 0.0011 38.0 10.2 60 361-431 68-130 (323)
99 KOG0006 E3 ubiquitin-protein l 62.4 5.6 0.00012 45.5 2.7 63 31-94 310-413 (446)
100 PF13712 Glyco_tranf_2_5: Glyc 59.1 28 0.00062 37.9 7.4 49 543-599 40-89 (217)
101 PF03966 Trm112p: Trm112p-like 58.5 1.3 2.7E-05 39.8 -2.6 27 67-93 42-68 (68)
102 KOG0916 1,3-beta-glucan syntha 57.7 1.7E+02 0.0037 40.1 14.7 80 788-876 1173-1257(1679)
103 PRK00420 hypothetical protein; 55.5 4.4 9.6E-05 40.2 0.4 29 56-90 24-52 (112)
104 PF02318 FYVE_2: FYVE-type zin 55.3 5.8 0.00013 39.3 1.2 47 35-84 53-100 (118)
105 COG4858 Uncharacterized membra 53.5 60 0.0013 35.2 8.2 80 990-1072 96-178 (226)
106 PF14471 DUF4428: Domain of un 53.3 7.3 0.00016 33.5 1.3 28 38-71 1-28 (51)
107 PF13923 zf-C3HC4_2: Zinc fing 53.2 9.9 0.00022 30.2 2.0 39 39-84 1-39 (39)
108 PF00097 zf-C3HC4: Zinc finger 52.8 9.4 0.0002 30.3 1.8 40 39-84 1-41 (41)
109 PRK12495 hypothetical protein; 51.6 8 0.00017 42.5 1.6 29 55-90 42-70 (226)
110 PRK15103 paraquat-inducible me 50.5 12 0.00025 45.0 2.9 30 53-91 219-248 (419)
111 KOG3737 Predicted polypeptide 50.3 75 0.0016 38.0 9.0 47 355-404 150-196 (603)
112 COG5114 Histone acetyltransfer 50.1 5.3 0.00012 45.7 -0.0 36 38-77 7-43 (432)
113 smart00291 ZnF_ZZ Zinc-binding 49.9 11 0.00024 31.1 1.8 37 36-77 4-41 (44)
114 PRK04023 DNA polymerase II lar 48.7 11 0.00024 49.2 2.3 45 34-89 624-674 (1121)
115 PF07282 OrfB_Zn_ribbon: Putat 47.9 11 0.00025 33.4 1.7 33 35-68 27-59 (69)
116 PF13920 zf-C3HC4_3: Zinc fing 47.9 11 0.00023 31.5 1.5 45 38-90 4-49 (50)
117 KOG0311 Predicted E3 ubiquitin 47.7 3.6 7.8E-05 47.7 -1.8 46 37-88 44-89 (381)
118 PHA02926 zinc finger-like prot 46.7 21 0.00046 39.5 3.8 61 34-94 168-235 (242)
119 TIGR00155 pqiA_fam integral me 45.5 12 0.00027 44.6 2.1 30 54-91 214-243 (403)
120 smart00249 PHD PHD zinc finger 43.9 9.4 0.0002 30.1 0.5 31 38-72 1-31 (47)
121 PF11077 DUF2616: Protein of u 43.7 8.1 0.00018 41.1 0.2 35 39-78 55-104 (173)
122 KOG1941 Acetylcholine receptor 43.6 8.8 0.00019 45.1 0.4 69 35-106 364-438 (518)
123 PRK00398 rpoP DNA-directed RNA 43.0 14 0.00031 30.6 1.5 27 38-65 5-31 (46)
124 PRK12380 hydrogenase nickel in 42.3 7 0.00015 38.7 -0.5 26 56-88 71-96 (113)
125 PF07851 TMPIT: TMPIT-like pro 40.1 5.5E+02 0.012 30.4 14.0 18 923-940 173-190 (330)
126 TIGR02443 conserved hypothetic 39.5 16 0.00034 32.6 1.2 31 34-64 7-40 (59)
127 PRK07220 DNA topoisomerase I; 39.1 12 0.00026 48.0 0.7 48 37-86 590-643 (740)
128 PRK00564 hypA hydrogenase nick 38.1 9.9 0.00022 37.8 -0.2 29 56-91 72-101 (117)
129 COG0551 TopA Zn-finger domain 38.1 17 0.00037 36.9 1.5 49 34-86 15-68 (140)
130 PF03884 DUF329: Domain of unk 38.0 18 0.00038 32.1 1.3 33 75-107 15-53 (57)
131 TIGR00599 rad18 DNA repair pro 37.9 25 0.00055 42.0 3.0 53 29-89 18-71 (397)
132 cd02335 ZZ_ADA2 Zinc finger, Z 37.8 22 0.00049 30.0 1.9 30 38-71 2-32 (49)
133 PF11238 DUF3039: Protein of u 37.7 12 0.00027 33.1 0.3 12 79-90 45-56 (58)
134 cd02249 ZZ Zinc finger, ZZ typ 37.7 22 0.00048 29.5 1.8 29 38-71 2-31 (46)
135 KOG2068 MOT2 transcription fac 37.5 12 0.00027 43.2 0.4 30 62-91 1-32 (327)
136 COG4818 Predicted membrane pro 37.4 2.9E+02 0.0064 27.2 9.3 88 941-1053 5-92 (105)
137 KOG0457 Histone acetyltransfer 36.9 13 0.00029 44.3 0.5 58 36-100 14-74 (438)
138 PF01155 HypA: Hydrogenase exp 36.1 4.7 0.0001 39.8 -2.8 13 79-91 87-99 (113)
139 PF06906 DUF1272: Protein of u 35.1 34 0.00073 30.3 2.5 47 38-90 7-53 (57)
140 PF09484 Cas_TM1802: CRISPR-as 34.6 21 0.00044 44.7 1.7 44 33-77 195-254 (593)
141 COG4739 Uncharacterized protei 34.5 24 0.00052 36.7 1.8 46 45-90 77-122 (182)
142 COG2191 Formylmethanofuran deh 34.2 20 0.00043 39.1 1.3 26 36-71 172-201 (206)
143 COG0068 HypF Hydrogenase matur 33.7 33 0.00071 43.6 3.1 55 34-88 99-183 (750)
144 PF14634 zf-RING_5: zinc-RING 33.1 36 0.00077 27.8 2.3 43 39-86 2-44 (44)
145 PRK03681 hypA hydrogenase nick 32.9 13 0.00027 36.9 -0.4 29 56-91 71-100 (114)
146 PF07649 C1_3: C1-like domain; 32.8 21 0.00045 27.0 0.8 28 38-69 2-29 (30)
147 COG1996 RPC10 DNA-directed RNA 31.6 22 0.00047 30.6 0.8 29 36-65 6-34 (49)
148 TIGR00100 hypA hydrogenase nic 31.4 15 0.00033 36.4 -0.1 21 71-91 79-99 (115)
149 PRK11827 hypothetical protein; 31.1 28 0.00061 31.1 1.5 32 64-95 12-43 (60)
150 cd00730 rubredoxin Rubredoxin; 30.9 12 0.00025 32.3 -0.9 7 80-86 36-42 (50)
151 cd00350 rubredoxin_like Rubred 30.8 12 0.00027 29.0 -0.7 14 76-89 15-28 (33)
152 KOG2792 Putative cytochrome C 30.7 41 0.00089 38.1 3.0 41 342-383 158-198 (280)
153 KOG2442 Uncharacterized conser 30.6 1.7E+02 0.0036 36.0 8.1 79 992-1081 311-391 (541)
154 PRK14503 mannosyl-3-phosphogly 30.0 1.9E+02 0.0042 34.5 8.2 41 542-585 142-182 (393)
155 PRK14890 putative Zn-ribbon RN 29.9 54 0.0012 29.3 3.0 49 36-86 7-56 (59)
156 PF00265 TK: Thymidine kinase; 29.7 20 0.00043 38.1 0.3 34 37-70 138-176 (176)
157 COG2888 Predicted Zn-ribbon RN 29.6 44 0.00095 29.9 2.4 48 36-85 9-57 (61)
158 PRK07219 DNA topoisomerase I; 29.3 24 0.00053 45.9 1.1 53 36-91 688-746 (822)
159 PRK11595 DNA utilization prote 29.2 31 0.00067 37.9 1.8 39 36-87 5-43 (227)
160 PRK14973 DNA topoisomerase I; 29.1 28 0.00061 45.9 1.7 48 37-87 589-644 (936)
161 TIGR01562 FdhE formate dehydro 28.7 43 0.00094 38.8 2.9 44 35-87 183-233 (305)
162 PRK04296 thymidine kinase; Pro 27.3 27 0.00059 37.0 0.9 35 37-71 141-186 (190)
163 PRK14873 primosome assembly pr 27.1 37 0.00081 43.2 2.2 9 79-87 423-431 (665)
164 KOG3507 DNA-directed RNA polym 27.0 24 0.00053 31.3 0.4 28 36-65 20-47 (62)
165 PF13896 Glyco_transf_49: Glyc 27.0 69 0.0015 37.1 4.2 39 560-599 126-164 (317)
166 PF00628 PHD: PHD-finger; Int 26.9 38 0.00083 28.1 1.6 45 38-86 1-50 (51)
167 KOG3736 Polypeptide N-acetylga 26.8 80 0.0017 39.7 4.8 49 356-407 138-186 (578)
168 TIGR01206 lysW lysine biosynth 26.4 40 0.00086 29.6 1.6 12 38-49 4-15 (54)
169 TIGR00155 pqiA_fam integral me 25.8 38 0.00083 40.6 1.9 34 54-91 12-46 (403)
170 PF09526 DUF2387: Probable met 25.7 36 0.00078 31.4 1.2 30 35-64 7-39 (71)
171 KOG2824 Glutaredoxin-related p 25.7 34 0.00074 38.9 1.3 22 33-62 226-247 (281)
172 COG4391 Uncharacterized protei 25.1 24 0.00052 31.6 0.0 17 74-90 44-60 (62)
173 KOG2857 Predicted MYND Zn-fing 24.3 37 0.00081 35.1 1.2 45 36-92 5-50 (157)
174 PF13240 zinc_ribbon_2: zinc-r 24.1 16 0.00035 26.5 -1.0 13 75-87 10-22 (23)
175 COG1499 NMD3 NMD protein affec 24.1 40 0.00087 39.8 1.5 49 34-98 4-60 (355)
176 PF13248 zf-ribbon_3: zinc-rib 24.0 17 0.00038 26.8 -0.9 13 75-87 13-25 (26)
177 PRK03824 hypA hydrogenase nick 23.9 20 0.00043 36.6 -0.9 11 77-87 106-116 (135)
178 TIGR00595 priA primosomal prot 23.9 32 0.00069 42.3 0.7 52 48-99 205-261 (505)
179 PRK06319 DNA topoisomerase I/S 23.7 37 0.0008 44.5 1.3 56 35-93 591-660 (860)
180 PF08274 PhnA_Zn_Ribbon: PhnA 23.6 28 0.00061 27.0 0.1 24 38-63 4-27 (30)
181 COG4707 Uncharacterized protei 23.3 30 0.00065 33.6 0.3 43 464-517 20-69 (107)
182 smart00744 RINGv The RING-vari 23.2 94 0.002 26.4 3.2 45 38-85 1-49 (49)
183 PF07754 DUF1610: Domain of un 22.9 59 0.0013 24.2 1.6 24 39-63 1-24 (24)
184 PF13719 zinc_ribbon_5: zinc-r 22.9 32 0.00069 27.5 0.3 11 80-90 4-14 (37)
185 PF03452 Anp1: Anp1; InterPro 22.8 8.1E+02 0.018 28.2 11.4 39 546-585 128-166 (269)
186 PTZ00293 thymidine kinase; Pro 22.3 37 0.0008 37.4 0.8 35 37-71 138-177 (211)
187 TIGR02556 cas_TM1802 CRISPR-as 22.2 54 0.0012 41.0 2.2 41 36-77 170-222 (555)
188 KOG1609 Protein involved in mR 22.2 50 0.0011 37.2 1.8 58 36-94 78-139 (323)
189 KOG2177 Predicted E3 ubiquitin 22.1 47 0.001 35.6 1.5 43 35-85 12-54 (386)
190 cd03031 GRX_GRX_like Glutaredo 22.0 30 0.00064 35.9 -0.0 43 35-86 98-141 (147)
191 PF13717 zinc_ribbon_4: zinc-r 21.8 34 0.00075 27.3 0.3 11 80-90 4-14 (36)
192 PF14319 Zn_Tnp_IS91: Transpos 21.6 52 0.0011 32.5 1.6 35 50-91 37-73 (111)
193 KOG0320 Predicted E3 ubiquitin 21.4 60 0.0013 34.9 2.0 45 37-87 132-176 (187)
194 PRK08359 transcription factor; 21.3 29 0.00062 37.2 -0.3 31 36-74 6-42 (176)
195 PRK12438 hypothetical protein; 21.3 1.5E+03 0.032 30.8 14.6 46 1024-1069 259-304 (991)
196 cd02336 ZZ_RSC8 Zinc finger, Z 21.1 49 0.0011 27.9 1.1 33 38-75 2-35 (45)
197 TIGR02921 PEP_integral PEP-CTE 20.8 1.7E+03 0.036 28.7 13.9 25 872-896 47-71 (952)
198 PF04641 Rtf2: Rtf2 RING-finge 20.2 67 0.0015 36.1 2.3 51 34-90 111-162 (260)
No 1
>PLN02436 cellulose synthase A
Probab=100.00 E-value=0 Score=2889.69 Aligned_cols=1088 Identities=89% Similarity=1.495 Sum_probs=1019.9
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCC
Q 001369 1 MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1091)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~ 80 (1091)
||+++||+||||||||||+++.|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 m~~~~~~~~gs~~r~e~~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~ 80 (1094)
T PLN02436 1 MNTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1094)
T ss_pred CCcccccccccccccceeEeccccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 99999999999999999999999777778999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhccccCCCCcCCCCCcCCcCcccccccCCCCCCCCCCchhhHHHhhhhccCCCCCCCc------CCCCCCCCC
Q 001369 81 CPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIPTRSE------LDSAPLSSN 154 (1091)
Q Consensus 81 CPqCkt~Ykr~kg~prv~gd~ee~~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 154 (1091)
|||||||||||||||||+||||||++||+||||++. .++.+.++++|+|+|++|++|++.+-.. .+..+..++
T Consensus 81 Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1094)
T PLN02436 81 CPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYG-NNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQ 159 (1094)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhhcCc-ccccchHHHHHHHhhhhcccCccccccccccccccccCCCcCC
Confidence 999999999999999999999999999999999986 2323457789999999999998866111 112111467
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhh
Q 001369 155 IPLLTYGEEDDDISSDRHALIVPPYMGHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKL 234 (1091)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1091)
+|++++|+++++.+++.|++++++.+|.||++||+||+|++.++++|.+||+||+++||||||+||||||+||+||++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~~~ 239 (1094)
T PLN02436 160 IPLLTYGEEDVEISSDRHALIVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEKL 239 (1094)
T ss_pred CcccccCcccCccCCcccccccCCcccccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhhhcc
Confidence 89999998777777667777678877889999999999999999999999999999999999999999999999998655
Q ss_pred hhcccCCCCCCCCCCCCCCCCCCCcccccCCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHhhhcccccchhHHHHHH
Q 001369 235 QVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLT 314 (1091)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~~Wl~ 314 (1091)
+++.+..+..+++++|++.+++|++++|++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~ 319 (1094)
T PLN02436 240 QVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLT 319 (1094)
T ss_pred cccccccccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHH
Confidence 55555322212344433334678888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCcccccccchhHhHhhhhhccCCCCCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCC
Q 001369 315 SVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVD 394 (1091)
Q Consensus 315 ~~~~E~~f~~~wiL~~~~kw~Pv~R~t~~drL~~r~e~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~ 394 (1091)
+++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|
T Consensus 320 s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~e 399 (1094)
T PLN02436 320 SVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVD 399 (1094)
T ss_pred HHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHH
Q 001369 395 KVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRI 474 (1091)
Q Consensus 395 kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI 474 (1091)
||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.++++++++|+|++|||+|||||||||+||
T Consensus 400 KlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RI 479 (1094)
T PLN02436 400 KVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKI 479 (1094)
T ss_pred ceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHH
Q 001369 475 NALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVR 554 (1091)
Q Consensus 475 ~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallr 554 (1091)
|+|+++++++|+++|.|+||++|||++++|||+||||||+++|+.|.+|++||+||||||||||||+||+||||||+|+|
T Consensus 480 e~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlR 559 (1094)
T PLN02436 480 NALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIR 559 (1094)
T ss_pred HHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhhhh
Confidence 99999889999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred hhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccCCCCccccccchhhhhhhhccccccCCC
Q 001369 555 VSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQG 634 (1091)
Q Consensus 555 vSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~gldg~qg 634 (1091)
|||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+||++||||++|+|+||+||
T Consensus 560 VSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGlqG 639 (1094)
T PLN02436 560 VSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQG 639 (1094)
T ss_pred hheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhh
Q 001369 635 PIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGV 714 (1091)
Q Consensus 635 p~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1091)
|+|+||||+|||+||||++||...+.+...++||+.|||+||+.|+++++.+....+ +.++.+...++++++++++++
T Consensus 640 P~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 717 (1094)
T PLN02436 640 PIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKK--KKKNREASKQIHALENIEEGI 717 (1094)
T ss_pred ccccccCceeeeeeeeccCCccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccc
Confidence 999999999999999999999877666678899999999999998775433211001 122234455778899999999
Q ss_pred cccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCchhhhhHHHHHHhhhccccccccccccccCcccccccchHH
Q 001369 715 EETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDIL 794 (1091)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~ 794 (1091)
+++++|++..+++++++++||+|++|++|++++.||.+...+++++++||++|+||+||++|+||+||||+|+|+|||+.
T Consensus 718 ~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv~ 797 (1094)
T PLN02436 718 EGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDIL 797 (1094)
T ss_pred ccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHHH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhccchhHhhhhccccccccCCCCCcccceeeeecchhhhh
Q 001369 795 TGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWT 874 (1091)
Q Consensus 795 Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRl~Yl~~~ly~l~ 874 (1091)
||++||++||||+|++|.+++|.|+||+|+.+++.||+|||+|++||++++++|+|+|+.++|+|+||++|+++++||++
T Consensus 798 TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~~~ly~l~ 877 (1094)
T PLN02436 798 TGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWT 877 (1094)
T ss_pred HHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887789999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhcCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccchhhhhhhhhHHHHHHHHH
Q 001369 875 SIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALFQG 954 (1091)
Q Consensus 875 sl~~liylllP~l~Ll~G~~iip~vs~~~~l~fi~lfls~~l~~~Le~~wsG~sl~~wWrneq~W~I~~~sa~LfAv~~a 954 (1091)
++++++|+++|++||++|++++|.++.+++++|+++|+++++++++|++|+|+++++||||||||+|+++++|+||++++
T Consensus 878 Slp~liY~~lP~l~LL~G~~i~P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~ 957 (1094)
T PLN02436 878 SIPLIVYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQG 957 (1094)
T ss_pred HHHHHHHHHHHHHHHHcCCeecCccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccceEeCcCCCCCCcccceeecccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHH
Q 001369 955 LLKVLAGVSTNFTVTSKGADDGEFSELYLFKWTSLLIPPTTLFIINVVGVVVGISDAINNGYDSWGPLFGRLFFALWVII 1034 (1091)
Q Consensus 955 LlkvL~g~~~~F~VTpK~~~~~~~~~ly~f~ws~LliP~~~LllLnlvaiv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvv~ 1034 (1091)
++|+|++++++|.||+|..+++.++++|+|+|+++++|+++++++|++|+++|++++++++++.|+++++++|+++|+++
T Consensus 958 iLKvLggs~~~F~VTsK~~d~~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvvv 1037 (1094)
T PLN02436 958 LLKVLAGVNTNFTVTSKAADDGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIV 1037 (1094)
T ss_pred HHHHhccCcccceecccccccccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999887667789999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeecCCCCCCCCccccccCCCC
Q 001369 1035 HLYPFLKGLLGKQDRMPTIILVWSILLASILTLMWVRINPFVSKDGPVLEICGLNCD 1091 (1091)
Q Consensus 1035 nl~PflkgL~gR~~r~P~~v~~~s~~la~~f~~lwv~i~~~~~~~~~~~~~~~~~~~ 1091 (1091)
|+|||++|||||++|+||||++||++||++||||||+||||++++||++++|||||+
T Consensus 1038 ~lyPf~kgL~gr~~r~P~~v~v~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1094 (1094)
T PLN02436 1038 HLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVSKGGPVLEICGLDCD 1094 (1094)
T ss_pred HHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeeeccccCCCCccccccCccCC
Confidence 999999999999999999999999999999999999999999999999999999996
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=9.9e-324 Score=2871.02 Aligned_cols=1072 Identities=67% Similarity=1.207 Sum_probs=986.1
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCC
Q 001369 1 MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1091)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~ 80 (1091)
||+++|||||||||||||+|+.|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 ~~~~~glvaGSh~Rnelv~i~~d~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~ 80 (1085)
T PLN02400 1 MEANAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQC 80 (1085)
T ss_pred CCCccccccccccccceeeecccccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCcc
Confidence 99999999999999999999999877789999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhccccCCCCcCCCCCcCCcCcccccccCCCCCCCCCCchhhHHHhhhhccCCCCCCCcCCCC--CCCCCCCCC
Q 001369 81 CPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSA--PLSSNIPLL 158 (1091)
Q Consensus 81 CPqCkt~Ykr~kg~prv~gd~ee~~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 158 (1091)
|||||||||||||||||+|||||||+||+||||++.+.++.+.++++ |++.+ ...+ .+.+++|++
T Consensus 81 CPQCkTrYkR~KgsprV~GDeeedd~DDlenEf~~~~~~~~~~~~~~----------~~~~~---~~~~~~~~~~~~p~l 147 (1085)
T PLN02400 81 CPQCKTRYRRHKGSPRVEGDEDEDDVDDLENEFNYAQGNGKARHQWQ----------GEDIE---LSSSSRHESQPIPLL 147 (1085)
T ss_pred CcccCCccccccCCCCCCcccccccchhhhhhhcccccccccccccc----------ccCcc---ccCcccccCCCCccc
Confidence 99999999999999999999999999999999998532211122211 34332 1111 013579999
Q ss_pred CCCC-CCCCCC--ccccccccCCCC---CCCCccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhh
Q 001369 159 TYGE-EDDDIS--SDRHALIVPPYM---GHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNE 232 (1091)
Q Consensus 159 ~~~~-~~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1091)
|+|| ++++++ ++.|+.+.++.+ |.|+++||+||+|+.+|+++|.+||+||+++|||||++||||||+||+||+|
T Consensus 148 t~g~~~s~ei~~~~~~~~~~~~~~~~~~~~~~~vh~~p~~d~~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k 227 (1085)
T PLN02400 148 THGQPVSGEIPCATPDNQSVRTTSGPLGPAERNANSSPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDK 227 (1085)
T ss_pred cCCcccCCCCCCCCCccccccCCcccccccCCcccccCccCcccCCCccccCccccccccccCcHHHHHHHHHHHhhhhh
Confidence 9998 656666 334444455433 4579999999999999999999999999999999999999999999999987
Q ss_pred hhhhcccCCC-CCCCCCCCCCCCCCCCcccccCCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHhhhcccccchhHHH
Q 001369 233 KLQVVKHEGG-SDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYAL 311 (1091)
Q Consensus 233 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~~ 311 (1091)
++.++.+... ..||+.+|++++++|+++||++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+
T Consensus 228 ~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~ 307 (1085)
T PLN02400 228 NMMQMTNKYHEGKGGDMEGTGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGL 307 (1085)
T ss_pred hccccccccccccccCCCCCCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHH
Confidence 7665554321 112244433445678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccccccchhHhHhhhhhccCCCCCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 001369 312 WLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDY 391 (1091)
Q Consensus 312 Wl~~~~~E~~f~~~wiL~~~~kw~Pv~R~t~~drL~~r~e~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DY 391 (1091)
|+++|+||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+||
T Consensus 308 Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DY 387 (1085)
T PLN02400 308 WLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDY 387 (1085)
T ss_pred HHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHH
Q 001369 392 PVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFK 471 (1091)
Q Consensus 392 P~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k 471 (1091)
|+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.++++++.+|+|++|||+|||||||||
T Consensus 388 P~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k 467 (1085)
T PLN02400 388 PVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFK 467 (1085)
T ss_pred cccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHH
Q 001369 472 IRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNA 551 (1091)
Q Consensus 472 ~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNa 551 (1091)
+|||+|+++++++|+++|+|+|||+|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+
T Consensus 468 ~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNa 547 (1085)
T PLN02400 468 VRINALVAKAQKIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNA 547 (1085)
T ss_pred HHHHHHHhhhccCCccccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccCCCCccccccchhhhhhhhcccccc
Q 001369 552 LVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG 631 (1091)
Q Consensus 552 llrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~gldg 631 (1091)
|+||||||||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||
T Consensus 548 LlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~GldG 627 (1085)
T PLN02400 548 LIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDG 627 (1085)
T ss_pred HHHHhhhhcCCceEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccccCCcccccccCcc-hhhhhhchhhhhhhhhhhhhhh
Q 001369 632 IQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPK-KDKKKKSKNKEASKQIHALENI 710 (1091)
Q Consensus 632 ~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 710 (1091)
+|||+|+||||+|||+||||++|+..+......+ .||+||+.|++.++++.. ..+++..+..+++.++++++++
T Consensus 628 lqGP~YvGTGC~frR~aLYG~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1085)
T PLN02400 628 IQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNI-----IVKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDI 702 (1085)
T ss_pred CCCccccccCcceeeeeeccCCCccccccccccc-----ccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999976543211111 134466666654322111 1122222334566789999999
Q ss_pred hhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCchhhhhHHHHHHhhhccccccccccccccCccccccc
Q 001369 711 EEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVT 790 (1091)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSIT 790 (1091)
++++++++++++..+++++++++||+|++|++|++++.||.+...+++++++||+||+||+||++|+||+||||+|+|+|
T Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvT 782 (1085)
T PLN02400 703 EEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVT 782 (1085)
T ss_pred ccccccccchhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeecccee
Confidence 99999999999889999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred chHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhccchhHhhhhccccccccCCCCCcccceeeeecch
Q 001369 791 EDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVV 870 (1091)
Q Consensus 791 EDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRl~Yl~~~l 870 (1091)
||+.||++||++||||+|++|++++|.|+||+|+.++++||+|||+|++||+++++||+++|+.++|+|+||++|+++++
T Consensus 783 ED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl~~~~ 862 (1085)
T PLN02400 783 EDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIV 862 (1085)
T ss_pred chHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987778999999999999999
Q ss_pred hhhhHHHHHHHHHHhHHHHhhcCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccchhhhhhhhhHHHHH
Q 001369 871 YPWTSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFA 950 (1091)
Q Consensus 871 y~l~sl~~liylllP~l~Ll~G~~iip~vs~~~~l~fi~lfls~~l~~~Le~~wsG~sl~~wWrneq~W~I~~~sa~LfA 950 (1091)
||++++++++|+++|++||++|++++|.++.+++++|+++|+++++++++|++|+|+++++||||||||+|.++|+||||
T Consensus 863 y~~~slp~liY~llP~l~LltG~~i~P~vs~~~~~~fi~lf~~~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~Sa~Lfa 942 (1085)
T PLN02400 863 YPITSIPLLAYCVLPAFCLITNKFIIPEISNYASMWFILLFISIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFA 942 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccCCccchHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhhhccceeeehhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccceEeCcCCCCC-CcccceeecccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHH
Q 001369 951 LFQGLLKVLAGVSTNFTVTSKGADD-GEFSELYLFKWTSLLIPPTTLFIINVVGVVVGISDAINNGYDSWGPLFGRLFFA 1029 (1091)
Q Consensus 951 v~~aLlkvL~g~~~~F~VTpK~~~~-~~~~~ly~f~ws~LliP~~~LllLnlvaiv~Gi~r~i~~~~~~w~~l~g~l~~~ 1029 (1091)
++++++|+|++++++|.||+|..++ +.++++|+|+|+++++|+++++++|++|+++|++++++++++.|+++++++|++
T Consensus 943 vl~~ilKvLgg~~~~F~VTsK~~d~~~~~~ely~f~~s~L~iP~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~~~~~ 1022 (1085)
T PLN02400 943 VFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGKLFFA 1022 (1085)
T ss_pred HHHHHHHHhcCCcccceecCCcccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Confidence 9999999999999999999998764 356899999999999999999999999999999999998888999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeecCCCCC-CCC-ccccccCCC
Q 001369 1030 LWVIIHLYPFLKGLLGKQDRMPTIILVWSILLASILTLMWVRINPFVSK-DGP-VLEICGLNC 1090 (1091)
Q Consensus 1030 ~Wvv~nl~PflkgL~gR~~r~P~~v~~~s~~la~~f~~lwv~i~~~~~~-~~~-~~~~~~~~~ 1090 (1091)
+|+++|+|||++|||||++|||+||++||++||++|+||||+||||+++ +|| ++++|||+|
T Consensus 1023 ~wvvv~l~Pf~kgL~gR~~r~P~~v~~~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
T PLN02400 1023 IWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFVSDTTKAAANGQCGVNC 1085 (1085)
T ss_pred HHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHheeccccccCCCCchhHhhcCcCC
Confidence 9999999999999999999999999999999999999999999999999 999 999999999
No 3
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=7e-312 Score=2767.22 Aligned_cols=1057 Identities=68% Similarity=1.210 Sum_probs=964.1
Q ss_pred cccccccccccccCCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccccCCCCcCCCC
Q 001369 22 ADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDE 101 (1091)
Q Consensus 22 ~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~kg~prv~gd~ 101 (1091)
.|++.++||++++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|||
T Consensus 3 ~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDe 82 (1079)
T PLN02638 3 SEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDE 82 (1079)
T ss_pred CCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCccc
Confidence 35666778999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcCC-cCcccccccCCCCCCCCCCchhhHHHhhhhccCCCCC----CCcCCCCCCCCCCCCCCCCC-CCCCCC--ccccc
Q 001369 102 EEDD-IDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIPT----RSELDSAPLSSNIPLLTYGE-EDDDIS--SDRHA 173 (1091)
Q Consensus 102 ee~~-~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~ 173 (1091)
|||+ +||+||||++.+.++.+.++++|+|+|++|+||+++| +++.+.+ ++++|++|+|| ++++.+ ++.++
T Consensus 83 eed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~ 160 (1079)
T PLN02638 83 EEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVS--HNHIPLLTNGQSVSGELSAASPERL 160 (1079)
T ss_pred cccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCC--CCCCcccccCccccCccCCCCCccc
Confidence 8886 8999999998633333457789999999999999876 1122222 36789999998 555555 23333
Q ss_pred cccCCCCCCCCccccCCCCCCC-CCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhhhhcccCC----CCCCCCC
Q 001369 174 LIVPPYMGHGNRVHPMPFADPS-TPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLQVVKHEG----GSDSRNF 248 (1091)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 248 (1091)
+++++.+ .||++ ||+|+. +|.+.|.|||+||+++|||||++||||||+||.||+|++.++.+.. +.+|++.
T Consensus 161 ~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~ 236 (1079)
T PLN02638 161 SMASPGA-GGKRI---PYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDI 236 (1079)
T ss_pred cccCccc-cCCcc---cccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCC
Confidence 4445543 47887 888865 7889999999999999999999999999999999987765544432 2222333
Q ss_pred CCCCC-CCCCCcccccCCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHH
Q 001369 249 DGGEL-DDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWI 327 (1091)
Q Consensus 249 ~~~~~-~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~~Wl~~~~~E~~f~~~wi 327 (1091)
+++++ +++|+++|+++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wl 316 (1079)
T PLN02638 237 DASTDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWI 316 (1079)
T ss_pred CCccccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHH
Confidence 32222 35788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccchhHhHhhhhhccCCCCCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChh
Q 001369 328 LDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 407 (1091)
Q Consensus 328 L~~~~kw~Pv~R~t~~drL~~r~e~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 407 (1091)
|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+
T Consensus 317 l~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~ 396 (1079)
T PLN02638 317 LDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 396 (1079)
T ss_pred HhccccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhHHHhhhhhhhhhhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 001369 408 LTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEE 487 (1091)
Q Consensus 408 ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~ 487 (1091)
||||||.|||+|||+||||||||+|||||||+||++|.++++++.+|+|++|||+|||||||||+|||+++++++++|++
T Consensus 397 LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~ 476 (1079)
T PLN02638 397 LTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEE 476 (1079)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCcchhhhhhcCCCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEE
Q 001369 488 GWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLN 567 (1091)
Q Consensus 488 ~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~ 567 (1091)
+|.|+||++|||++++|||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||
T Consensus 477 ~~~m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILN 556 (1079)
T PLN02638 477 GWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLN 556 (1079)
T ss_pred cccccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccCCCCccccccchhhhhhhhccccccCCCccccccCcchhhh
Q 001369 568 VDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQ 647 (1091)
Q Consensus 568 lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ 647 (1091)
||||||+|||++||+||||||||+.|+++|||||||+|||+|++|||+||++||||++|+|+||+|||+||||||+|||+
T Consensus 557 LDCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ 636 (1079)
T PLN02638 557 LDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRT 636 (1079)
T ss_pred cccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCccCCCCCCCCCCCCCccccccCCccccc-ccCcchh-hhhhchhhhhhhhhhhhhhhhhhhcc--cccCCCC
Q 001369 648 ALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKK-AKQPKKD-KKKKSKNKEASKQIHALENIEEGVEE--TNAEKPS 723 (1091)
Q Consensus 648 ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 723 (1091)
||||++||...+. +.+..+++||+..++++ +.+.... ++++.++.+.+.+++++++++++.+. ++++++.
T Consensus 637 ALYG~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1079)
T PLN02638 637 ALYGYEPPIKPKH------KKPGFLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSL 710 (1079)
T ss_pred hhcCcCCcccccc------cccccccccccccccccccccchhhccccccccccccccccccccccccccccccchhhhh
Confidence 9999999864321 12222334555533332 2211000 11111223345567778888887765 5667778
Q ss_pred chhhHHHHhhcCCchHHhhhhhhhcCCCCCchhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcC
Q 001369 724 DMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHG 803 (1091)
Q Consensus 724 ~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rG 803 (1091)
.+++.+++++||+|++|++|++++.+|.+...+++++++||++|+||+||++|+||+||||+|+|+|||+.||++||++|
T Consensus 711 ~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rG 790 (1079)
T PLN02638 711 LMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARG 790 (1079)
T ss_pred hhhhhhhhhhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCC
Confidence 89999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCccccccCCCCHHHHHHHHHHHhccchhHhhhhccccccccCCCCCcccceeeeecchhhhhHHHHHHHHH
Q 001369 804 WRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYCT 883 (1091)
Q Consensus 804 WrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRl~Yl~~~ly~l~sl~~liyll 883 (1091)
|||+|++|.+++|.|+||+|+.++++||+|||+|++||++++++|+++|++++|+|+||++|+++++||++++++++|++
T Consensus 791 WrSvY~~P~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~sip~liY~l 870 (1079)
T PLN02638 791 WRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIPLLLYCT 870 (1079)
T ss_pred CcEEecCCCchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999899999999999999999999999999999999999999887789999999999999999999999999999
Q ss_pred HhHHHHhhcCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccchhhhhhhhhHHHHHHHHHHHHHhcCCc
Q 001369 884 LPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALFQGLLKVLAGVS 963 (1091)
Q Consensus 884 lP~l~Ll~G~~iip~vs~~~~l~fi~lfls~~l~~~Le~~wsG~sl~~wWrneq~W~I~~~sa~LfAv~~aLlkvL~g~~ 963 (1091)
+|++||++|++++|.++.+++++|+++|+++++++++|++|+|+++++||||||||+|+++++|+||++++++|+|++++
T Consensus 871 lP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lggs~ 950 (1079)
T PLN02638 871 LPAVCLLTGKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGID 950 (1079)
T ss_pred HHHHHHHcCCccCCCccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHccCc
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeCcCCCCC-CcccceeecccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 001369 964 TNFTVTSKGADD-GEFSELYLFKWTSLLIPPTTLFIINVVGVVVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKG 1042 (1091)
Q Consensus 964 ~~F~VTpK~~~~-~~~~~ly~f~ws~LliP~~~LllLnlvaiv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~Pflkg 1042 (1091)
++|.||+|..++ +.++++|+|+||++++|+++|+++|++|+++|++++++++++.|+++++++|+++|+++|+|||++|
T Consensus 951 ~~F~VTsK~~d~~~~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf~kg 1030 (1079)
T PLN02638 951 TNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKG 1030 (1079)
T ss_pred ccceeccccccccccccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999998764 3578999999999999999999999999999999999888889999999999999999999999999
Q ss_pred hhcCCCCcchhHHHHHHHHHHHHHHhheeecCCCCC-CCCccccccCCC
Q 001369 1043 LLGKQDRMPTIILVWSILLASILTLMWVRINPFVSK-DGPVLEICGLNC 1090 (1091)
Q Consensus 1043 L~gR~~r~P~~v~~~s~~la~~f~~lwv~i~~~~~~-~~~~~~~~~~~~ 1090 (1091)
||||++|+||||++||++|+++|+||||+|+||+++ +||++++|||+|
T Consensus 1031 l~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1031 LMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079 (1079)
T ss_pred HhccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 999999999999999999999999999999999999 999999999999
No 4
>PLN02189 cellulose synthase
Probab=100.00 E-value=6.6e-304 Score=2691.53 Aligned_cols=1031 Identities=68% Similarity=1.230 Sum_probs=951.8
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCC
Q 001369 1 MATGGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1091)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~ 80 (1091)
||+++||+||||||||||+++.| + +.||++++++|+||||||+||+++|||+|||||||+|||||||||||||||||+
T Consensus 1 ~~~~~g~~~gs~~r~~~~~~~~~-~-~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~ 78 (1040)
T PLN02189 1 MEASAGLVAGSHNRNELVVIHGH-E-EPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQN 78 (1040)
T ss_pred CCcccccccccccccceeeeccc-c-CCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 99999999999999999999977 3 458899999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhccccCCCCcCCCCCcCCcCcccccccCCCCCCCCCCchhhHHHhhhhccCCCCCCCcCCCCCCCCCCCCCCC
Q 001369 81 CPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLLTY 160 (1091)
Q Consensus 81 CPqCkt~Ykr~kg~prv~gd~ee~~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1091)
|||||||||||||||||+|||||||+||+||||++.+ ++.+.++++|+|+|++|++|++.+ ... +++++|++++
T Consensus 79 CpqCkt~Y~r~kgs~~v~gd~ee~~~dd~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~ 152 (1040)
T PLN02189 79 CPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDD-EQDKNKHITEAMLHGKMSYGRGPD---DDE--NNQFPPVITG 152 (1040)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhccccc-cccchhHHHHHHhhhhcccCCCcc---cCC--CcCCCccccc
Confidence 9999999999999999999999999999999999863 222457789999999999998865 111 1467899999
Q ss_pred CC---CCCCCCc----cccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhh
Q 001369 161 GE---EDDDISS----DRHALIVPPYMGHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEK 233 (1091)
Q Consensus 161 ~~---~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1091)
|+ ++++.++ ..|+.++++. .|+++||+||+|. ++|.|||+||++ ||||||+||+||++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~--------wk~rv~~wk~~~~~- 217 (1040)
T PLN02189 153 VRSRPVSGEFPIGSGYGHGEQMLSSS--LHKRVHPYPVSEP----GSAKWDEKKEGG--------WKERMDDWKMQQGN- 217 (1040)
T ss_pred CccccccCCcCccccccccccccCCc--ccCccCcccccCC----CcccCCcccccc--------HHHHHHHHHhhccc-
Confidence 86 4555553 1333444553 5899999999884 568999999875 99999999999951
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCcccccCCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHhhhcccccchhHHHHH
Q 001369 234 LQVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWL 313 (1091)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~~Wl 313 (1091)
. +++ ++++++|.++++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+
T Consensus 218 -----~-~~~-------~~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~ 284 (1040)
T PLN02189 218 -----L-GPD-------PDDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWL 284 (1040)
T ss_pred -----C-CCC-------CCCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHH
Confidence 1 111 233356778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcccccccchhHhHhhhhhccCCCCCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCC
Q 001369 314 TSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPV 393 (1091)
Q Consensus 314 ~~~~~E~~f~~~wiL~~~~kw~Pv~R~t~~drL~~r~e~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~ 393 (1091)
++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+
T Consensus 285 ~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~ 364 (1040)
T PLN02189 285 TSIICEIWFAVSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPV 364 (1040)
T ss_pred HHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHH
Q 001369 394 DKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIR 473 (1091)
Q Consensus 394 ~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~r 473 (1091)
|||+|||||||+|+||||||.|||+|||+||||||||||||||||+||++|.++++++.+|+|++|||+|||||||||+|
T Consensus 365 eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvR 444 (1040)
T PLN02189 365 DKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVR 444 (1040)
T ss_pred cceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHH
Q 001369 474 INALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALV 553 (1091)
Q Consensus 474 I~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNall 553 (1091)
||+++++++++|+++|.|+||++|||++++|||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+
T Consensus 445 I~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLl 524 (1040)
T PLN02189 445 INAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALI 524 (1040)
T ss_pred HHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccCCCCccccccchhhhhhhhccccccCC
Q 001369 554 RVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQ 633 (1091)
Q Consensus 554 rvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~gldg~q 633 (1091)
||||+|||||||||||||||+|||++||+||||||||+.|+++|||||||+|+|+|++|||+||++||||++|+|+||+|
T Consensus 525 RVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlq 604 (1040)
T PLN02189 525 RVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQ 604 (1040)
T ss_pred HHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhh
Q 001369 634 GPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEG 713 (1091)
Q Consensus 634 gp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1091)
||+||||||+|||+||||++|+...+.+..++ +||+||..++++++.+.. .....++
T Consensus 605 GP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~------------------~~~~~~~ 661 (1040)
T PLN02189 605 GPVYVGTGCVFRRQALYGYDPPKGPKRPKMVT-----CDCCPCFGRRKKKHAKNG------------------LNGEVAA 661 (1040)
T ss_pred CccccccCceeeeeeeeccCcccccccccccc-----cchhhhcccccccccccc------------------ccccccc
Confidence 99999999999999999999876544333322 223455444432111000 0000123
Q ss_pred hcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCchhhhhHHHHHHhhhccccccccccccccCcccccccchH
Q 001369 714 VEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDI 793 (1091)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi 793 (1091)
+++++++++..+++++++++||+|.+|++|++.+.+|.+..++++++++||++|+||+||++|+||+||||.|+|+|||+
T Consensus 662 ~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED~ 741 (1040)
T PLN02189 662 LGGMESDKEMLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDI 741 (1040)
T ss_pred ccccchhhhhhhhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccHH
Confidence 44455566667889999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhccchhHhhhhccccccccC-CCCCcccceeeeecchhh
Q 001369 794 LTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG-GGLKLLERFSYINSVVYP 872 (1091)
Q Consensus 794 ~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQil~sk~~Pl~~g~~-~~L~~~QRl~Yl~~~ly~ 872 (1091)
.||++||++||||+|++|++++|.|+||+|+.++++||+|||+|++||+++++||+++|++ ++|+|+||++|+++++||
T Consensus 742 ~TG~rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~~ly~ 821 (1040)
T PLN02189 742 LTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNTTIYP 821 (1040)
T ss_pred HHHHHHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998763 679999999999999999
Q ss_pred hhHHHHHHHHHHhHHHHhhcCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccchhhhhhhhhHHHHHHH
Q 001369 873 WTSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALF 952 (1091)
Q Consensus 873 l~sl~~liylllP~l~Ll~G~~iip~vs~~~~l~fi~lfls~~l~~~Le~~wsG~sl~~wWrneq~W~I~~~sa~LfAv~ 952 (1091)
++++++++|+++|++||++|++++|.++.+++++|+++|+++++++++|++|+|+++++||||||||+|+++++|+||++
T Consensus 822 ~~sip~liY~~lP~l~Ll~g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~sG~s~~~WWrnQq~w~I~~~Sa~Lfavl 901 (1040)
T PLN02189 822 FTSLPLLAYCTLPAICLLTGKFIMPPISTFASLFFIALFMSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVV 901 (1040)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhhhhHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccceEeCcCCCCCCcccceeecccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHH
Q 001369 953 QGLLKVLAGVSTNFTVTSKGADDGEFSELYLFKWTSLLIPPTTLFIINVVGVVVGISDAINNGYDSWGPLFGRLFFALWV 1032 (1091)
Q Consensus 953 ~aLlkvL~g~~~~F~VTpK~~~~~~~~~ly~f~ws~LliP~~~LllLnlvaiv~Gi~r~i~~~~~~w~~l~g~l~~~~Wv 1032 (1091)
++++|+|++++++|.||+|..+++.++++|+|+||++++|+++|+++|++|+++|++++++++++.|+++++++|+++|+
T Consensus 902 ~~ilKvlggs~~~F~VTsK~~~d~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv~g~~~~~~~~~~~~~~~~~~~~~~~wv 981 (1040)
T PLN02189 902 QGLLKVLAGIDTNFTVTSKATDDDEFGELYAFKWTTLLIPPTTLLIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFWV 981 (1040)
T ss_pred HHHHHHhccCcccceeccccccccccccceeecceeHhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHH
Confidence 99999999999999999999888888899999999999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeecCCCCC-CCCccccccCCC
Q 001369 1033 IIHLYPFLKGLLGKQDRMPTIILVWSILLASILTLMWVRINPFVSK-DGPVLEICGLNC 1090 (1091)
Q Consensus 1033 v~nl~PflkgL~gR~~r~P~~v~~~s~~la~~f~~lwv~i~~~~~~-~~~~~~~~~~~~ 1090 (1091)
++|+|||++|||||++|+||||++||++|+++|+||||+||||+++ +||++++|||+|
T Consensus 982 v~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1040 (1040)
T PLN02189 982 IVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDVKQCGINC 1040 (1040)
T ss_pred HHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 9999999999999999999999999999999999999999999999 999999999999
No 5
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=3.1e-302 Score=2677.62 Aligned_cols=1007 Identities=68% Similarity=1.278 Sum_probs=930.5
Q ss_pred ccccCCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccccCCCCcCCC-CCcCCcCcc
Q 001369 31 VKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGD-EEEDDIDDL 109 (1091)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~kg~prv~gd-~ee~~~~d~ 109 (1091)
-++.++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||+++||+
T Consensus 10 ~~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~ 89 (1044)
T PLN02915 10 RQSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDF 89 (1044)
T ss_pred ccCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhh
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999 567889999
Q ss_pred cccccCCCCCCCCCCchhhHHHhhhhccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCccccC
Q 001369 110 DHEFDYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLLTYGEEDDDISSDRHALIVPPYMGHGNRVHPM 189 (1091)
Q Consensus 110 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (1091)
||||++...+ + .+.|.+++|++|++.+ ...+.+++++|++++ + |+.
T Consensus 90 ~~~~~~~~~~----~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~--------------------~~~---- 135 (1044)
T PLN02915 90 EDEFQIKSPQ----D--HEPVHQNVFAGSENGD---YNAQQWRPGGPAFSS-T--------------------GSV---- 135 (1044)
T ss_pred hhhhcccccc----c--cchhhhhhccCCCCcc---ccccccCCCCccccC-C--------------------CCc----
Confidence 9999985211 1 1238899999988765 112111234454433 1 000
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCCCCcccccCCCCce
Q 001369 190 PFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLQVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLS 269 (1091)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 269 (1091)
..+.+||+|| ||||++||||||+||+||+ |++.+.++.++ .+ +..+++|+++|+++++||+
T Consensus 136 ---------~~~~~~~~~~----~~g~~~wk~r~~~wk~~~~-~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~pL~ 196 (1044)
T PLN02915 136 ---------AGKDLEAERE----GYGNAEWKDRVDKWKTRQE-KRGLVNKDDSD----DG-DDKGDEEEYLLAEARQPLW 196 (1044)
T ss_pred ---------CCCCcCcccc----CcCCHHHHHHHHHHHhhhh-hhccccccccC----CC-CCCCCcccccccccCCCce
Confidence 1125889997 8999999999999999996 55444443221 11 1223568889999999999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhHhHhhhh
Q 001369 270 RKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLR 349 (1091)
Q Consensus 270 ~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~~Wl~~~~~E~~f~~~wiL~~~~kw~Pv~R~t~~drL~~r 349 (1091)
||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++|
T Consensus 197 ~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r 276 (1044)
T PLN02915 197 RKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMR 276 (1044)
T ss_pred EEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhh
Q 001369 350 YEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKK 429 (1091)
Q Consensus 350 ~e~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk 429 (1091)
||+++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+|||||||
T Consensus 277 ~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK 356 (1044)
T PLN02915 277 FERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKK 356 (1044)
T ss_pred hccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhhcchhhh
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchh
Q 001369 430 FNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMI 509 (1091)
Q Consensus 430 ~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~ii 509 (1091)
|+|||||||+||++|.++++++++|+|++|||+|||||||||+|||+|+++++++|+++|+|+|||+|||+++||||+||
T Consensus 357 ~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~II 436 (1044)
T PLN02915 357 HNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMI 436 (1044)
T ss_pred cCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcC
Q 001369 510 QVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 589 (1091)
Q Consensus 510 qv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~D 589 (1091)
||||+++|+.|.+|++||+||||||||||||+||+||||||+|+||||||||||||||||||||+|||+++|+|||||||
T Consensus 437 qVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD 516 (1044)
T PLN02915 437 QVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD 516 (1044)
T ss_pred EEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCccccCCCCccccccchhhhhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCC
Q 001369 590 PQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWP 669 (1091)
Q Consensus 590 p~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 669 (1091)
|+.|+++|||||||+|+|+|++|||+||++||||++|+|+||+|||+||||||+|||+||||++||..++.++.+++||+
T Consensus 517 ~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~~~~~~~ 596 (1044)
T PLN02915 517 PQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWP 596 (1044)
T ss_pred CCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777888999999
Q ss_pred CccccccCCcccccccCcchh-----------hhh------------hchhhhhhhhhhhhhhhhhhhccccc-CCCCch
Q 001369 670 KWCCLCCGSRKNKKAKQPKKD-----------KKK------------KSKNKEASKQIHALENIEEGVEETNA-EKPSDM 725 (1091)
Q Consensus 670 ~~~~~c~~~~~~~~~~~~~~~-----------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 725 (1091)
.|||+||+.++|+++....+. +++ ++...+++.+.+++++|++++|++++ |+++.+
T Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1044)
T PLN02915 597 SWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDELEKSSLM 676 (1044)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence 999999988876543211000 000 00122355678899999999999887 888889
Q ss_pred hhHHHHhhcCCchHHhhhhhhhcCCCCCchhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcE
Q 001369 726 SRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWR 805 (1091)
Q Consensus 726 ~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWr 805 (1091)
++++++++||+|++|++|++++.+|.+...+++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++|||
T Consensus 677 ~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWr 756 (1044)
T PLN02915 677 SQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWK 756 (1044)
T ss_pred hhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccccccccHHHHHHHHHccCCc
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCccccccCCCCHHHHHHHHHHHhccchhHhhhhccccccccCCCCCcccceeeeecchhhhhHHHHHHHHHHh
Q 001369 806 SVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYCTLP 885 (1091)
Q Consensus 806 svY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRl~Yl~~~ly~l~sl~~liylllP 885 (1091)
|+|++|++++|.|+||+|+.++++||+|||+|++||++++++|+|+++.++|+++||++|+++++||++++++++|+++|
T Consensus 757 SvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL~Yl~~~~yp~~slp~liY~llP 836 (1044)
T PLN02915 757 SVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIP 836 (1044)
T ss_pred EEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987778999999999999999999999999999999
Q ss_pred HHHHhhcCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccchhhhhhhhhHHHHHHHHHHHHHhcCCccc
Q 001369 886 AFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALFQGLLKVLAGVSTN 965 (1091)
Q Consensus 886 ~l~Ll~G~~iip~vs~~~~l~fi~lfls~~l~~~Le~~wsG~sl~~wWrneq~W~I~~~sa~LfAv~~aLlkvL~g~~~~ 965 (1091)
++||++|++++|.++.+++++|+++|+++++++++|++|+|+++++||||||||+|+++++|+||++++++|+|++++++
T Consensus 837 ~l~LLtG~~i~P~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvLg~se~~ 916 (1044)
T PLN02915 837 AVCLLTGKFIIPTLNNLASIWFLALFLSIIATSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTN 916 (1044)
T ss_pred HHHHHcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 99999999999988887788899999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeCcCCCCCC--cccceeecccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 001369 966 FTVTSKGADDG--EFSELYLFKWTSLLIPPTTLFIINVVGVVVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGL 1043 (1091)
Q Consensus 966 F~VTpK~~~~~--~~~~ly~f~ws~LliP~~~LllLnlvaiv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~PflkgL 1043 (1091)
|+||+|..+++ .++++|+|+||++++|+++++++|++|+++|++++++++++.|+++++++|+++|+++|+|||++||
T Consensus 917 F~VTsK~~d~~~d~~~ely~F~~S~l~iP~ttllllNlvalv~Gi~~~i~~~~~~~g~l~~~l~~~~wvvv~lyPf~kgL 996 (1044)
T PLN02915 917 FTVTSKAADDEADEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGL 996 (1044)
T ss_pred ceecCCccccchhhhccceeecceehHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987533 5679999999999999999999999999999999998888899999999999999999999999999
Q ss_pred hcCCCCcchhHHHHHHHHHHHHHHhheeecCCCCC-CCCccccccCCC
Q 001369 1044 LGKQDRMPTIILVWSILLASILTLMWVRINPFVSK-DGPVLEICGLNC 1090 (1091)
Q Consensus 1044 ~gR~~r~P~~v~~~s~~la~~f~~lwv~i~~~~~~-~~~~~~~~~~~~ 1090 (1091)
|||++|+||||++||++||++|+||||+||||+++ +||++++|||+|
T Consensus 997 mgR~~r~P~~v~v~s~lla~~~~ll~v~~~~~~~~~~~~~~~~~~~~~ 1044 (1044)
T PLN02915 997 MGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPILKQCGVEC 1044 (1044)
T ss_pred hCCCCCCCeeehHHHHHHHHHHHHHHheeccccCCCCCccccccCCCC
Confidence 99999999999999999999999999999999999 999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=5.2e-284 Score=2508.52 Aligned_cols=971 Identities=64% Similarity=1.212 Sum_probs=878.7
Q ss_pred ccCCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccccCCCCcCCCCCcCCcCccccc
Q 001369 33 ELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHE 112 (1091)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~kg~prv~gd~ee~~~~d~~~e 112 (1091)
++++|+||||||+||+++|||+|||||||+|||||||||||||||||+||||||||| |||++||+|||
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk------------~~~~~~d~~~~ 70 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD------------AENVFDDVETK 70 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc------------cccccchhhhh
Confidence 467899999999999999999999999999999999999999999999999999998 57788999999
Q ss_pred ccCCCCCCCCCCchhhHHHhhhhccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCccccCCCC
Q 001369 113 FDYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLLTYGEEDDDISSDRHALIVPPYMGHGNRVHPMPFA 192 (1091)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 192 (1091)
|+.+ .++++ ++|++|++.+ . +.+++|++++- .| .+
T Consensus 71 ~~~~------~~~~~-----~~~~~~~~~~-----~--~~~~~~~~~~~--------------------~~-~~------ 105 (977)
T PLN02195 71 HSRN------QSTMA-----SHLNDTQDVG-----I--HARHISSVSTV--------------------DS-EL------ 105 (977)
T ss_pred hccc------hhhhh-----hhcccCcCCC-----C--CCccccccccC--------------------CC-cc------
Confidence 9432 22322 6677776532 1 11233433220 00 00
Q ss_pred CCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCCCCcccccCCCCceeee
Q 001369 193 DPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLQVVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKL 272 (1091)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~k~ 272 (1091)
+. +|||++||||||+||.||+||+.++.+.+.. .++.+ ++++++|+++ ||.++||+||+
T Consensus 106 ------------~~------~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~~pL~~~~ 164 (977)
T PLN02195 106 ------------ND------EYGNPIWKNRVESWKDKKNKKKKSAKKKEAH-KAQIP-PEQQMEEKPS-ADAYEPLSRVI 164 (977)
T ss_pred ------------cC------ccCCHHHHHHHHHHHHhhhhhcccccccccc-ccCCC-CccCCccccc-ccccCCceEEE
Confidence 11 3999999999999999998776655543321 11222 2334567775 99999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhHhHhhhhhcc
Q 001369 273 PIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEK 352 (1091)
Q Consensus 273 ~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~~Wl~~~~~E~~f~~~wiL~~~~kw~Pv~R~t~~drL~~r~e~ 352 (1091)
++++++|+|||++++++|+++++||+||++|++++++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++
T Consensus 165 ~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~ 244 (977)
T PLN02195 165 PIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYIDRLSARYER 244 (977)
T ss_pred ecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCC
Q 001369 353 EGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNI 432 (1091)
Q Consensus 353 ~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~I 432 (1091)
++++++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||+||||||||+|
T Consensus 245 ~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~I 324 (977)
T PLN02195 245 EGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPFCKKYSI 324 (977)
T ss_pred CCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhh
Q 001369 433 EPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVF 512 (1091)
Q Consensus 433 epR~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~ 512 (1091)
||||||+||++|.++++++.+|+|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||+++||||+|||||
T Consensus 325 epRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp~IIqVl 404 (977)
T PLN02195 325 EPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHPGMIQVF 404 (977)
T ss_pred CcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCCCcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCC
Q 001369 513 LGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQS 592 (1091)
Q Consensus 513 l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~ 592 (1091)
|+++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||++||+|||||+||+.
T Consensus 405 l~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~~~ 484 (977)
T PLN02195 405 LGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDPVV 484 (977)
T ss_pred ccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCccc
Confidence 99999899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCccccCCCCccccccchhhhhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCcc
Q 001369 593 GKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWC 672 (1091)
Q Consensus 593 g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~ 672 (1091)
|+++|||||||+|+|+|++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++|+..++.++.++.+| |
T Consensus 485 g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~---~ 561 (977)
T PLN02195 485 GRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSSSSSS---S 561 (977)
T ss_pred CCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCccccccccccccccc---c
Confidence 9999999999999999999999999999999999999999999999999999999999999987655444445444 4
Q ss_pred ccccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCC
Q 001369 673 CLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVT 752 (1091)
Q Consensus 673 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~ 752 (1091)
| ||+.+++..+..+ ...+..++.+.+.+++.++++++ ..+++++..+++++++++||+|.+|++|++++.+|.+
T Consensus 562 ~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~ 635 (977)
T PLN02195 562 C-CCPTKKKPEQDPS--EIYRDAKREDLNAAIFNLREIDN---YDEYERSMLISQMSFEKTFGLSSVFIESTLMENGGVP 635 (977)
T ss_pred c-cccccccccccch--hhccccccccccccccccccccc---cchhhhhhhhhhhHHHHhhcccHHHHHHHHHHhcCCC
Confidence 4 4454443221100 00011112222223334443332 2234667788999999999999999999999999998
Q ss_pred CchhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHH
Q 001369 753 GDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVL 832 (1091)
Q Consensus 753 ~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~ 832 (1091)
...+++++++||++|+||+||++|+||+||||.|||+|||+.||++||++||||+|++|.+++|.|+||+|+.++++||+
T Consensus 636 ~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~ 715 (977)
T PLN02195 636 ESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVL 715 (977)
T ss_pred CCCCcHHHHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred HHhccchhHhhhhccccccccC-CCCCcccceeeeecchhhhhHHHHHHHHHHhHHHHhhcCcccccchhHHHHHHHHHH
Q 001369 833 RWALGSVEIFLSRHCPIWYGYG-GGLKLLERFSYINSVVYPWTSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLF 911 (1091)
Q Consensus 833 RWA~G~lQil~sk~~Pl~~g~~-~~L~~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~vs~~~~l~fi~lf 911 (1091)
|||+|++||+++++||+++|+. ++|+|+||++|+++++||++++++++|+++|++||++|++++|.++.+++++|+++|
T Consensus 716 RWA~G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~~~f~~lf 795 (977)
T PLN02195 716 RWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLASMLFLGLF 795 (977)
T ss_pred HHHhchhhhhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHHHHHHHHH
Confidence 9999999999999999998764 789999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHHHhhccCcccccccccchhhhhhhhhHHHHHHHHHHHHHhcCCccceEeCcCCCCCCcccceeecccccchh
Q 001369 912 ISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALFQGLLKVLAGVSTNFTVTSKGADDGEFSELYLFKWTSLLI 991 (1091)
Q Consensus 912 ls~~l~~~Le~~wsG~sl~~wWrneq~W~I~~~sa~LfAv~~aLlkvL~g~~~~F~VTpK~~~~~~~~~ly~f~ws~Lli 991 (1091)
+++++++++|++|+|+++++||||||||+|+++|+||||++++++|+|++++++|.||+|..++++++++|+|+||++++
T Consensus 796 l~~~~~~~lE~~~sG~si~~WWrnqq~w~I~~tSa~Lfavl~~llKvLggs~~~F~VTsK~~dd~~~~~~Y~f~~S~l~i 875 (977)
T PLN02195 796 ISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTAKAADDTEFGELYMVKWTTLLI 875 (977)
T ss_pred HHHHHHHHHHHHhcccCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHcCCCccceeccccccccchhcceeccceehhH
Confidence 99999999999999999999999999999999999999999999999999999999999998877889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhhee
Q 001369 992 PPTTLFIINVVGVVVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIILVWSILLASILTLMWVR 1071 (1091)
Q Consensus 992 P~~~LllLnlvaiv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~PflkgL~gR~~r~P~~v~~~s~~la~~f~~lwv~ 1071 (1091)
|+++++++|++|+++|++++++++++.|+++++++|+++|+++|+|||++|||||++|+|+||++||++||++||||||+
T Consensus 876 P~ttl~ilNlvaiv~g~~~~i~~~~~~~g~l~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~ 955 (977)
T PLN02195 876 PPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVK 955 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHee
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC-CCCc-cccc-cCCC
Q 001369 1072 INPFVSK-DGPV-LEIC-GLNC 1090 (1091)
Q Consensus 1072 i~~~~~~-~~~~-~~~~-~~~~ 1090 (1091)
||||+++ +||+ +++| |++|
T Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~ 977 (977)
T PLN02195 956 INPFVGKTDTTTLSNNCISIDC 977 (977)
T ss_pred ccccccCCCCCchhhccCCCCC
Confidence 9999999 9999 9999 9999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=3.4e-253 Score=2253.34 Aligned_cols=949 Identities=49% Similarity=0.926 Sum_probs=830.1
Q ss_pred CCcccccccC---CceEEEeecccccccccccccCCccccc--cccccccCCCCCccccCCCCCCCcchhhHHHHHhhcC
Q 001369 4 GGRLIAGSHN---RNEFVLINADETARIKSVKELSGQTCQI--CEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN 78 (1091)
Q Consensus 4 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~C~i--Cgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~ 78 (1091)
+++||||||| |+|+|++..|++..|+++++++++.|.+ |+.+++.+++|++..+| ||+|.|||+||-++.++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 166 (1135)
T PLN02248 89 SNSIFTGGFNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG- 166 (1135)
T ss_pred ccceecCCCCccchhhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-
Confidence 6789999999 9999999999999999999999999999 99999999999999999 999999999999999996
Q ss_pred CCCCCChhhhccccCCCCcCCCCCcCCcCcccccccCCCCCCCCCCchhhHHHhhhhccCCCCCCCcCCCCCCCCCCCCC
Q 001369 79 QACPQCKTRYKRLKGSPRVEGDEEEDDIDDLDHEFDYGNLDGFGPQHVSDAALSARLNASGIPTRSELDSAPLSSNIPLL 158 (1091)
Q Consensus 79 ~~CPqCkt~Ykr~kg~prv~gd~ee~~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1091)
+.||+||++||.+ |+++++ +| ++. +...+ |+.
T Consensus 167 ~~~~~~~~~~~~~--------~~~~~~-~~----~~~------~~~~~-----------------------------~~~ 198 (1135)
T PLN02248 167 GICPGCKEPYKVT--------DLDDEV-PD----ESS------GALPL-----------------------------PPP 198 (1135)
T ss_pred CCCCCCccccccc--------cccccc-cc----ccc------ccccC-----------------------------CCC
Confidence 8999999999775 332222 11 111 01110 111
Q ss_pred CCCCCCCCCCcccc--ccc-cCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhhh
Q 001369 159 TYGEEDDDISSDRH--ALI-VPPYMGHGNRVHPMPFADPSTPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKKRQNEKLQ 235 (1091)
Q Consensus 159 ~~~~~~~~~~~~~~--~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1091)
..+.++ +++|..+ ..+ .++ +|+++ |+||++++| ++|||||+.|++...
T Consensus 199 ~~~~~~-~~~~~~~~~~~~~~~~---~~~~~------------~~~w~~~~~--~~~~~~~~~~~~~~~----------- 249 (1135)
T PLN02248 199 GGSKMD-RRLSLMKSNSLLMRSQ---TGDFD------------HNRWLFETK--GTYGYGNAVWPKDDG----------- 249 (1135)
T ss_pred CCcccc-cccccccccchhccCC---CCCCC------------Cceeeeecc--cccccccccCccccc-----------
Confidence 111121 3334333 111 134 57776 899999999 999999999998742
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCcccccCCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHhhhcccccchhHHHHHHH
Q 001369 236 VVKHEGGSDSRNFDGGELDDSDLPMMDEGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTS 315 (1091)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~~Wl~~ 315 (1091)
.|++. + + .+ ...+||++|+||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++
T Consensus 250 ----~~~~~----~--~-~~-~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s 317 (1135)
T PLN02248 250 ----YGDDG----G--G-GG-PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMS 317 (1135)
T ss_pred ----cCCCC----C--c-cc-cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH
Confidence 12110 0 1 11 11468999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHhhcCcccccccchhHhHhhhhhccCC-----CCCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCC
Q 001369 316 VICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEG-----KPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVD 390 (1091)
Q Consensus 316 ~~~E~~f~~~wiL~~~~kw~Pv~R~t~~drL~~r~e~~~-----~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~D 390 (1091)
++||+||+|+|+|+|++||+||+|.||+|||++|||.|+ ++++||+|||||||+||.||||++|+||||||||+|
T Consensus 318 ~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~D 397 (1135)
T PLN02248 318 VVCEIWFAFSWLLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAAD 397 (1135)
T ss_pred HHHHHHHHHHHHHhccccccccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhccc
Confidence 999999999999999999999999999999999998653 367899999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHH
Q 001369 391 YPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEF 470 (1091)
Q Consensus 391 YP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~ 470 (1091)
||+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||++|.++++++.+|+|++|||+||||||||
T Consensus 398 YP~eKLacYvSDDGgS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~ 477 (1135)
T PLN02248 398 YPVEKLACYLSDDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEF 477 (1135)
T ss_pred ccccceeEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh------------------------------hccCCccccccCCCCCCCCCC--------CCCCcchhhhh
Q 001369 471 KIRINALVAT------------------------------AQKVPEEGWTMQDGTPWPGNN--------VRDHPGMIQVF 512 (1091)
Q Consensus 471 k~rI~~l~~k------------------------------~~~~p~~~w~m~dg~~w~g~~--------~rdhp~iiqv~ 512 (1091)
|+|||+|++. .+++|+++| |+|||+|||+| ++|||+|||||
T Consensus 478 K~RIe~l~~~~~~rs~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~IIqVl 556 (1135)
T PLN02248 478 KVRINGLPDSIRRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGIIQVM 556 (1135)
T ss_pred HHHHHhhhhhccccccccchhHHHHhhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCcceeEEe
Confidence 9999999641 245788999 99999999984 56999999999
Q ss_pred hcCCC------------CcCC--CCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHH
Q 001369 513 LGQSG------------VRDV--EGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSK 578 (1091)
Q Consensus 513 l~~~g------------~~d~--~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~ 578 (1091)
|++++ ..|. .+.+||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+
T Consensus 557 l~~p~~e~~~g~~~~~~~~d~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~ 636 (1135)
T PLN02248 557 LKPPSDEPLMGSADDENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSL 636 (1135)
T ss_pred ccCCCcccccCcccccccccccccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCch
Confidence 98754 1122 244899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCccEEEEecCccccCCCCccccccchhhhhhhhccccccCCCccccccCcchhhhhhcCCCCCccC
Q 001369 579 ALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKK 658 (1091)
Q Consensus 579 ~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~ 658 (1091)
+||+||||||||+ |+++|||||||+|+|+|++|||+||++||||++|+|+||+|||+||||||+|||+||||++|+..+
T Consensus 637 alr~AMCf~lD~~-g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~ 715 (1135)
T PLN02248 637 AIREGMCFMMDRG-GDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAK 715 (1135)
T ss_pred hHHhcchheecCC-CCceEEEcCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCcccc
Confidence 9999999999997 999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCccccccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCch
Q 001369 659 KSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSP 738 (1091)
Q Consensus 659 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~ 738 (1091)
... .+|++||+.++++++.+.. ...+ +++++ .++ .++.+.++++||+|.
T Consensus 716 ~~~--------~~~~~~~~~~~~~~~~~~~-----------~~~~---~~~~~-----~~~----~~~~~~~~~rfG~S~ 764 (1135)
T PLN02248 716 EHS--------GCFGSCKFTKKKKKETSAS-----------EPEE---QPDLE-----DDD----DLELSLLPKRFGNST 764 (1135)
T ss_pred ccc--------ccccccccccccccccccc-----------cccc---ccccc-----ccc----hhhhhhhhhhhccch
Confidence 321 2244455544432111000 0000 11111 111 145677899999999
Q ss_pred HHhhhhhh-hcCCCCC-------------------chhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHH
Q 001369 739 VFVDSSLL-EDGGVTG-------------------DLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFK 798 (1091)
Q Consensus 739 ~f~~S~l~-e~GG~~~-------------------~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~r 798 (1091)
.|++|+.. +..|.+. ...++++++||++|+||+||++|+||+||||.|+|+|||+.||++
T Consensus 765 ~fi~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlr 844 (1135)
T PLN02248 765 MFAASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYR 844 (1135)
T ss_pred hhhhhhHHHhhcccccccccccccccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHH
Confidence 99999843 2222221 223568999999999999999999999999999999999999999
Q ss_pred HhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhccchhHhhhhccccccccCCCCCcccceeeeecchhhhhHHHH
Q 001369 799 MHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPL 878 (1091)
Q Consensus 799 Lh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRl~Yl~~~ly~l~sl~~ 878 (1091)
||++||||+||+|++.+|.|++|+|+.++++||+|||+|++||++++++|+++ .++|+++||++|+++++||++++++
T Consensus 845 LH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~--~~~Lsl~QRL~Yl~~~lypf~Slp~ 922 (1135)
T PLN02248 845 MHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA--SRRLKFLQRIAYLNVGIYPFTSIFL 922 (1135)
T ss_pred HHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhchHHHHhccCCcccc--CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999985 4789999999999999999999999
Q ss_pred HHHHHHhHHHHhhcCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccchhhhhhhhhHHHHHHHHHHHHH
Q 001369 879 IVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALFQGLLKV 958 (1091)
Q Consensus 879 liylllP~l~Ll~G~~iip~vs~~~~l~fi~lfls~~l~~~Le~~wsG~sl~~wWrneq~W~I~~~sa~LfAv~~aLlkv 958 (1091)
++|+++|++||++|++++|+.+..++++++.+++++++++++|++|+|+++++||||||||+|.++++|++|++++++|+
T Consensus 923 liY~llP~l~LLtGi~~~p~~~~~fl~yll~l~l~~~~~sllE~~wsGvsl~~WWrnQq~W~I~~tSA~L~A~l~aiLKv 1002 (1135)
T PLN02248 923 IVYCFLPALSLFSGQFIVQTLNVTFLVYLLIITITLCLLAVLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKV 1002 (1135)
T ss_pred HHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHhhhhheeeehhhHHHHHHHHHHHHHH
Confidence 99999999999999999998766555556566788899999999999999999999999999999999999999999999
Q ss_pred hcCCccceEeCcCCCCCC---cccceeecccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHH
Q 001369 959 LAGVSTNFTVTSKGADDG---EFSELYLFKWTSLLIPPTTLFIINVVGVVVGISDAINNGYDSWGPLFGRLFFALWVIIH 1035 (1091)
Q Consensus 959 L~g~~~~F~VTpK~~~~~---~~~~ly~f~ws~LliP~~~LllLnlvaiv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvv~n 1035 (1091)
|++++++|.||+|..+++ .++++|+|+|+++++|+++++++|++|+++|++|++.+.++.|+.+++++|+++|+++|
T Consensus 1003 Lggs~~~F~VTsK~~~~d~~~~~a~ly~f~wS~L~iP~ttl~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~ 1082 (1135)
T PLN02248 1003 IAGIEISFTLTSKSAGDDEDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAH 1082 (1135)
T ss_pred hcCccccceeCCcccccccccccchheecCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHH
Confidence 999999999999987533 46889999999999999999999999999999999987778899999999999999999
Q ss_pred HHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeecCCCCC
Q 001369 1036 LYPFLKGLLGKQDRMPTIILVWSILLASILTLMWVRINPFVSK 1078 (1091)
Q Consensus 1036 l~PflkgL~gR~~r~P~~v~~~s~~la~~f~~lwv~i~~~~~~ 1078 (1091)
+|||+||||||++|+||||++||++|+++++||||+|+||+..
T Consensus 1083 lyPf~kGL~gR~gr~P~iv~v~s~ll~~~~sll~v~~~~~~~~ 1125 (1135)
T PLN02248 1083 LYPFAKGLMGRRGRTPTIVYVWSGLLSITISLLWVAISPPSGA 1125 (1135)
T ss_pred HHHHHHHHhccCCCCCeehHHHHHHHHHHHHHHheEeccccCc
Confidence 9999999999999999999999999999999999999999954
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=2.4e-219 Score=1914.20 Aligned_cols=717 Identities=69% Similarity=1.254 Sum_probs=684.8
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCccccc
Q 001369 362 VDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYF 441 (1091)
Q Consensus 362 VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe~YF 441 (1091)
|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCcCC
Q 001369 442 SQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDV 521 (1091)
Q Consensus 442 s~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g~~d~ 521 (1091)
+++.|+++++.+|+|++|||+|||||||||+|||+++++++++|+++|+|+||++|||++++|||+||||+++++++.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEec
Q 001369 522 EGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQF 601 (1091)
Q Consensus 522 ~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~ 601 (1091)
+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCccccccchhhhhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccccCCccc
Q 001369 602 PQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKN 681 (1091)
Q Consensus 602 PQ~F~nid~~Dr~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 681 (1091)
||+|+|+|++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++|+...+..+.+| ||++||++++|
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~-----~~~~~c~~~~k 315 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTC-----CCCSCCFGRRK 315 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcce-----eeeecccCCcc
Confidence 9999999999999999999999999999999999999999999999999999998777655544 34444444544
Q ss_pred ccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCchhhhhHH
Q 001369 682 KKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLL 761 (1091)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~ 761 (1091)
+++.+++ .+++..++.+.+.+++++++++++.++.+++++..+++++++++||+|++|++|+.++.|+.+...+++++|
T Consensus 316 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L 394 (720)
T PF03552_consen 316 KKKSKKK-PKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLL 394 (720)
T ss_pred ccccccc-chhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHH
Confidence 4433222 122233456678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhccchhH
Q 001369 762 KEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEI 841 (1091)
Q Consensus 762 ~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQi 841 (1091)
+||+||+||+||++|+||+||||+|||+|||+.||++||++||||+||+|+++||.|.||+|+.+.+.|++|||.|++||
T Consensus 395 ~EA~~V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI 474 (720)
T PF03552_consen 395 EEAIHVASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEI 474 (720)
T ss_pred HHHHHHhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccccCCCCCcccceeeeecchhhhhHHHHHHHHHHhHHHHhhcCcccccchhHHHHHHHHHHHHHHHHHHHH
Q 001369 842 FLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILE 921 (1091)
Q Consensus 842 l~sk~~Pl~~g~~~~L~~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~vs~~~~l~fi~lfls~~l~~~Le 921 (1091)
+++|+||+|+++.++|+++||++|++.++|+++|+|+++|+++|++||++|++++|+++..++++|+++|+++++++++|
T Consensus 475 ~fSr~~Pl~~g~~~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~llE 554 (720)
T PF03552_consen 475 FFSRHCPLWYGYGGRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSLLE 554 (720)
T ss_pred ehhcCCchhccCCCCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHHHH
Confidence 99999999998778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcccccccccchhhhhhhhhHHHHHHHHHHHHHhcCCccceEeCcCCCC--CCcccceeecccccchhHHHHHHHH
Q 001369 922 MQWGGVGIDDWWRNEQFWVIGGASSHFFALFQGLLKVLAGVSTNFTVTSKGAD--DGEFSELYLFKWTSLLIPPTTLFII 999 (1091)
Q Consensus 922 ~~wsG~sl~~wWrneq~W~I~~~sa~LfAv~~aLlkvL~g~~~~F~VTpK~~~--~~~~~~ly~f~ws~LliP~~~LllL 999 (1091)
++|+|+++++||||||||+|.++++|+||++++++|+|++++++|.||+|..+ +++++++|+|+|+++++|+++|+++
T Consensus 555 ~~wsG~si~~WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~dde~~~~~ely~f~wS~LfiP~tTllil 634 (720)
T PF03552_consen 555 FRWSGVSIREWWRNQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVSDDEDDKYAELYIFKWSPLFIPPTTLLIL 634 (720)
T ss_pred HHhccCcHHHhhcccceeeehhhHHHHHHHHHHHHHHHcCCccceeecccccccccccccccccccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876 4456899999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeecCCCCC-
Q 001369 1000 NVVGVVVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIILVWSILLASILTLMWVRINPFVSK- 1078 (1091)
Q Consensus 1000 nlvaiv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~PflkgL~gR~~r~P~~v~~~s~~la~~f~~lwv~i~~~~~~- 1078 (1091)
|++|+++|+++++++++++|+++++++|+++|+++|+|||+||||||++|+||||++||++||++|+||||+||||++|
T Consensus 635 NLva~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~~llwv~i~~~~~~~ 714 (720)
T PF03552_consen 635 NLVAFVVGISRAINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIFSLLWVRIDPFLAKT 714 (720)
T ss_pred HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHHHHHheecccCcCCC
Confidence 9999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccc
Q 001369 1079 DGPVLE 1084 (1091)
Q Consensus 1079 ~~~~~~ 1084 (1091)
+||+++
T Consensus 715 ~~~~~~ 720 (720)
T PF03552_consen 715 TGPDLK 720 (720)
T ss_pred CCCCCC
Confidence 999875
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=1.5e-201 Score=1766.33 Aligned_cols=725 Identities=34% Similarity=0.604 Sum_probs=657.2
Q ss_pred CCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhH
Q 001369 264 GRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNAYALWLTSVICEIWFGVSWILDQFPKWYPITRETYL 343 (1091)
Q Consensus 264 ~~~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~~Wl~~~~~E~~f~~~wiL~~~~kw~Pv~R~t~~ 343 (1091)
+.+||++++++++++ ||++.+++++++++||+||++|+++++ ++|+++++||+||+|+|+|+|++||+|++|.|++
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 457999999999985 999999999999999999999999887 6899999999999999999999999999999999
Q ss_pred hHhhhhhccCCCCCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhh
Q 001369 344 DRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKW 423 (1091)
Q Consensus 344 drL~~r~e~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~W 423 (1091)
|||++||+ +||+||||||||||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+|
T Consensus 83 ~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~W 156 (756)
T PLN02190 83 DRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIW 156 (756)
T ss_pred HHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhh
Confidence 99999983 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCC--CCCCCCC
Q 001369 424 VPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDG--TPWPGNN 501 (1091)
Q Consensus 424 vPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg--~~w~g~~ 501 (1091)
|||||||||||||||+||+++.+ ++.+++|++|||+|||||||||+||++.+ +...|.+.|+ .+|++++
T Consensus 157 vPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~~ 227 (756)
T PLN02190 157 VPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNTK 227 (756)
T ss_pred cccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCCC
Confidence 99999999999999999998643 34568999999999999999999999864 3456767655 7899999
Q ss_pred CCCCcchhhhhhcCCCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHH
Q 001369 502 VRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALR 581 (1091)
Q Consensus 502 ~rdhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr 581 (1091)
++|||+||||+++++|+ +.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|
T Consensus 228 ~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r 306 (756)
T PLN02190 228 PNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVR 306 (756)
T ss_pred CCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHH
Confidence 99999999999999775 44789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCC-ccEEEEecCccccCCCCccccccchhhhhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCC
Q 001369 582 EAMCFMMDPQSG-KKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKS 660 (1091)
Q Consensus 582 ~amcff~Dp~~g-~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~ 660 (1091)
+||||||||+.+ +++|||||||+|+ |+|+||++||||++|+|+||+|||+|+||||+|||+||||++||...+.
T Consensus 307 ~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~ 381 (756)
T PLN02190 307 QAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDD 381 (756)
T ss_pred HhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCccccccc
Confidence 999999999744 5899999999998 7899999999999999999999999999999999999999988753221
Q ss_pred CCCCCCCCCCccccccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHH
Q 001369 661 PGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVF 740 (1091)
Q Consensus 661 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f 740 (1091)
... .+. .++ ...++.+++++||+|+.|
T Consensus 382 ~~~----------------------~~~------------------------------~~~-~~~~~~~~~~~fg~s~~f 408 (756)
T PLN02190 382 GSL----------------------SSV------------------------------ATR-EFLAEDSLAREFGNSKEM 408 (756)
T ss_pred ccc----------------------ccc------------------------------ccc-cccchhhhhhhcCCcHHH
Confidence 000 000 000 023456778999999999
Q ss_pred hhhhhhhcCCCCC-chhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCcccccc
Q 001369 741 VDSSLLEDGGVTG-DLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGS 819 (1091)
Q Consensus 741 ~~S~l~e~GG~~~-~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~ 819 (1091)
++|++.+..+.+. ..+.+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|.|.
T Consensus 409 ~~s~~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~ 488 (756)
T PLN02190 409 VKSVVDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGS 488 (756)
T ss_pred HHHHHHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCc
Confidence 9999865433222 334578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccchhHhhhhccccccccCCCCCcccceeeeecchhhhhHHHHHHHHHHhHHHHhhcCcccccc
Q 001369 820 APINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYCTLPAFCLLTGKFIVPEI 899 (1091)
Q Consensus 820 aP~tl~~~lkQR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~v 899 (1091)
+|+++.+.++||+|||+|++||+++++||++++..++|+++||++|++.++ |++++|+++|+++|++||++|++++|..
T Consensus 489 aP~~l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP~l~Ll~g~~i~P~~ 567 (756)
T PLN02190 489 MPPGGPEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLYVFT-CLRSIPELIYCLLPAYCLLHNSALFPKG 567 (756)
T ss_pred CCCChHHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccCc
Confidence 999999999999999999999999999999976668999999999999888 9999999999999999999999999975
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccchhhhhhhhhHHHHHHHHHHHHHhcCCccceEeCcCCCC-----
Q 001369 900 SNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALFQGLLKVLAGVSTNFTVTSKGAD----- 974 (1091)
Q Consensus 900 s~~~~l~fi~lfls~~l~~~Le~~wsG~sl~~wWrneq~W~I~~~sa~LfAv~~aLlkvL~g~~~~F~VTpK~~~----- 974 (1091)
.++++++++++++++++++|++|+|+++++||||||||+|.++|+|+||++++++|+|++++++|+||+|..+
T Consensus 568 --~~~~~~~~l~~~~~~~~l~E~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~F~vTsK~~~~~~~~ 645 (756)
T PLN02190 568 --VYLGIIVTLVGMHCLYTLWEFMSLGFSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTVFIVTKKTMPETKSG 645 (756)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccceEEEeeccccccccc
Confidence 3567788888999999999999999999999999999999999999999999999999999999999999643
Q ss_pred --------C--Cc--ccceeecccccchhHHHHHHHHHHHHHHHHHHHhhh---cCCCCcchhHHHHHHHHHHHHHHHHH
Q 001369 975 --------D--GE--FSELYLFKWTSLLIPPTTLFIINVVGVVVGISDAIN---NGYDSWGPLFGRLFFALWVIIHLYPF 1039 (1091)
Q Consensus 975 --------~--~~--~~~ly~f~ws~LliP~~~LllLnlvaiv~Gi~r~i~---~~~~~w~~l~g~l~~~~Wvv~nl~Pf 1039 (1091)
+ +. .+++|+|+||++++|+++++++|++|++.|+++++. ++.+.|+ .++++++++|+++|++||
T Consensus 646 ~~~~~~~~~~~~~~~~~~~f~f~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~-~l~q~~~~~~vv~~~~P~ 724 (756)
T PLN02190 646 SGSGPSQGEDDGPNSDSGKFEFDGSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGS-GLAEACGCILVVMLFLPF 724 (756)
T ss_pred cccccccccccchhhhcceeEecceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccc-cHHHHHHHHHHHHHHHHH
Confidence 1 11 258899999999999999999999999988887643 2334565 459999999999999999
Q ss_pred HHHhhcCC-CCcchhHHHHHHHHHHHHHHhhe
Q 001369 1040 LKGLLGKQ-DRMPTIILVWSILLASILTLMWV 1070 (1091)
Q Consensus 1040 lkgL~gR~-~r~P~~v~~~s~~la~~f~~lwv 1070 (1091)
+||||+|+ +|||++|+++|++|+.+|+++.|
T Consensus 725 ~~gl~~kdkg~iP~s~~~~s~~l~~~f~~~~~ 756 (756)
T PLN02190 725 LKGLFEKGKYGIPLSTLSKAAFLAVLFVVFSV 756 (756)
T ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHhccC
Confidence 99999776 59999999999999999999875
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=3.6e-192 Score=1694.89 Aligned_cols=706 Identities=36% Similarity=0.682 Sum_probs=650.3
Q ss_pred cCCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHhhhcccccchh-HHHHHHHHHHHHHHHHHHHHhhcCcccccccch
Q 001369 263 EGRQPLSRKLPIPSSKISPYRLIIILRLVILGLFFHYRILHPVNNA-YALWLTSVICEIWFGVSWILDQFPKWYPITRET 341 (1091)
Q Consensus 263 ~~~~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a-~~~Wl~~~~~E~~f~~~wiL~~~~kw~Pv~R~t 341 (1091)
...+||+++++++++. +||+++++++++++++|+||+++...+. .|+|+++++||+||+|+|+|+|++||+|++|+|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 4567999999999986 5999999999999999999999977654 789999999999999999999999999999999
Q ss_pred hHhHhhhhhccCCCCCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhh
Q 001369 342 YLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFAR 421 (1091)
Q Consensus 342 ~~drL~~r~e~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~ 421 (1091)
|+|||+++++ .++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||||+||||||.|||+|||
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997663 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCC-----CC
Q 001369 422 KWVPFCKKFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDG-----TP 496 (1091)
Q Consensus 422 ~WvPFCkk~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg-----~~ 496 (1091)
+||||||||+|||||||+||+++ +++|++||++||+||||||+|||+++++ +++|++ |.|.++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~--------~~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSN--------SHSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccC--------CCccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 99999999999999999999997 3468899999999999999999999976 888877 655443 78
Q ss_pred CCCCC-CCCCcchhhhhhcCCCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCC
Q 001369 497 WPGNN-VRDHPGMIQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYIN 575 (1091)
Q Consensus 497 w~g~~-~rdhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~ 575 (1091)
|+++. ++|||+||||+++++++.|.+|++||+||||||||||||+||+||||||+++||||++||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98765 78999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCccEEEEecCccccCCCCccccccchhhhhhhhccccccCCCccccccCcchhhhhhcCCCCC
Q 001369 576 NSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAP 655 (1091)
Q Consensus 576 n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~ 655 (1091)
||++||+|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998431
Q ss_pred ccCCCCCCCCCCCCCccccccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcC
Q 001369 656 VKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFG 735 (1091)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG 735 (1091)
... ++++ .++
T Consensus 393 ~~~-------------------------------------------------~~~~---------------------~~~ 402 (734)
T PLN02893 393 LIL-------------------------------------------------PEIP---------------------ELN 402 (734)
T ss_pred ccc-------------------------------------------------hhhh---------------------hcc
Confidence 000 0000 001
Q ss_pred CchHHhhhhhhhcCCCCCchhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCcc
Q 001369 736 QSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRAC 815 (1091)
Q Consensus 736 ~s~~f~~S~l~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aa 815 (1091)
++ ++...+..+.++++||++|+||.||++|+||+|+||.|+|+|||+.||++||++||||+|++|++.+
T Consensus 403 ~~-----------~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~a 471 (734)
T PLN02893 403 PD-----------HLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPA 471 (734)
T ss_pred cc-----------cccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchh
Confidence 10 1112334567899999999999999999999999999999999999999999999999999998889
Q ss_pred ccccCCCCHHHHHHHHHHHhccchhHhhhhccccccccCCCCCcccceeeeecchhhhhHHHHHHHHHHhHHHHhhcCcc
Q 001369 816 FKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYCTLPAFCLLTGKFI 895 (1091)
Q Consensus 816 f~G~aP~tl~~~lkQR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~i 895 (1091)
|.|++|+|+.++++||+|||+|++|++++++||+++|. ++|+++||++|++.++||++++++++|+++|++||++|+++
T Consensus 472 f~G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~-~~L~~~Qrl~Y~~~~~~~~~slp~liY~~~P~l~Ll~g~~i 550 (734)
T PLN02893 472 FLGDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGV-KSIGLLMGLGYAHYAFWPIWSIPITIYAFLPQLALLNGVSI 550 (734)
T ss_pred hccCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcc-cCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999654 78999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccchhhhhhhhhHHHHHHHHHHHHHhcCCccceEeCcCCCCC
Q 001369 896 VPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALFQGLLKVLAGVSTNFTVTSKGADD 975 (1091)
Q Consensus 896 ip~vs~~~~l~fi~lfls~~l~~~Le~~wsG~sl~~wWrneq~W~I~~~sa~LfAv~~aLlkvL~g~~~~F~VTpK~~~~ 975 (1091)
+|.++..++++++++++++++++++|++|+|.++++|||+||+|+|.++++++++++++++|.|++++.+|+||+|+.++
T Consensus 551 ~p~~s~~~f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~s~~~F~VT~K~~~~ 630 (734)
T PLN02893 551 FPKASDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDE 630 (734)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcccCCceeecCCCccc
Confidence 99998888888888999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred Cc---c-cceeeccc-ccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCC--
Q 001369 976 GE---F-SELYLFKW-TSLLIPPTTLFIINVVGVVVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQD-- 1048 (1091)
Q Consensus 976 ~~---~-~~ly~f~w-s~LliP~~~LllLnlvaiv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~PflkgL~gR~~-- 1048 (1091)
+. + .++|+|+| +++++|+++++++|++|+++|+++++.+ +.|+.+++++++++|++++++||++||++|++
T Consensus 631 ~~~~~y~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~--~~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~dkg 708 (734)
T PLN02893 631 EQSKRYEQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQ--RNLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDG 708 (734)
T ss_pred ccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 32 2 48999995 8899999999999999999999999875 35788899999999999999999999999986
Q ss_pred CcchhHHHHHHHHHHHHHHh
Q 001369 1049 RMPTIILVWSILLASILTLM 1068 (1091)
Q Consensus 1049 r~P~~v~~~s~~la~~f~~l 1068 (1091)
|||++|++||++||.+++++
T Consensus 709 ~~P~~v~~~s~~l~~~~~~~ 728 (734)
T PLN02893 709 KLPVKITLISIVLAWALYLA 728 (734)
T ss_pred CCCccHHHHHHHHHHHHHHH
Confidence 99999999999999887764
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=2e-65 Score=624.99 Aligned_cols=491 Identities=25% Similarity=0.391 Sum_probs=383.4
Q ss_pred HHH-HHHHHHHHHHHHhhhcccccchh----HHHHHHHHHHHHHHHHHHHHhhcCcccccccchhHhHhhhhhccCCCCC
Q 001369 283 RLI-IILRLVILGLFFHYRILHPVNNA----YALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPS 357 (1091)
Q Consensus 283 R~~-i~~~l~~l~~yl~wRi~~~~~~a----~~~Wl~~~~~E~~f~~~wiL~~~~kw~Pv~R~t~~drL~~r~e~~~~~~ 357 (1091)
|++ +++.+++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|...+ .+.+++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVP--------LPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccC--------CCCCcc
Confidence 654 55556667999999999876532 34567789999999998888888777888775421 223456
Q ss_pred CCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCc
Q 001369 358 QLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAP 437 (1091)
Q Consensus 358 ~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~P 437 (1091)
.+|+|||+||||| |++.++.+|+.+++++|||.+|+.|||+|||+++-|.....+
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~---------------------- 183 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDP---------------------- 183 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchh----------------------
Confidence 7999999999997 999999999999999999999999999999987733211111
Q ss_pred ccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCC
Q 001369 438 EWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSG 517 (1091)
Q Consensus 438 e~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g 517 (1091)
.+.| +.+-+..+.+++++
T Consensus 184 ------------------~~~~-------~~~~~~~~~~l~~~------------------------------------- 201 (713)
T TIGR03030 184 ------------------EQAE-------AAQRREELKEFCRK------------------------------------- 201 (713)
T ss_pred ------------------hhhh-------hhhhHHHHHHHHHH-------------------------------------
Confidence 0111 10001112233321
Q ss_pred CcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCccE
Q 001369 518 VRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGKKI 596 (1091)
Q Consensus 518 ~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff-~Dp~~g~~v 596 (1091)
.++.|+.|++ |+|+||||||++++. ++||||+++||||+ +.|++|++++++| .|| ++
T Consensus 202 ---------~~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 202 ---------LGVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ---------cCcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 1488999988 788999999999996 79999999999999 5899999999988 588 89
Q ss_pred EEEecCccccCCCCc-------cccccchhhhhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCC
Q 001369 597 CYVQFPQRFDGIDRH-------DRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWP 669 (1091)
Q Consensus 597 a~VQ~PQ~F~nid~~-------Dr~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 669 (1091)
++||+||.|+|.|+. +++.+++..||..+++|+|.+++++++||++++||+||
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al-------------------- 319 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREAL-------------------- 319 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHH--------------------
Confidence 999999999998753 34467788999999999999999999999999999988
Q ss_pred CccccccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcC
Q 001369 670 KWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDG 749 (1091)
Q Consensus 670 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~G 749 (1091)
+++|
T Consensus 320 ----------------------------------------------------------------------------~~iG 323 (713)
T TIGR03030 320 ----------------------------------------------------------------------------DEIG 323 (713)
T ss_pred ----------------------------------------------------------------------------HHcC
Confidence 2467
Q ss_pred CCCCchhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHH
Q 001369 750 GVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLH 829 (1091)
Q Consensus 750 G~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lk 829 (1091)
|+++ ++++||++++++||++||+++|++++.. +|++|+|++++++
T Consensus 324 Gf~~---------------------------------~~vtED~~l~~rL~~~G~~~~y~~~~~~--~g~~p~sl~~~~~ 368 (713)
T TIGR03030 324 GIAG---------------------------------ETVTEDAETALKLHRRGWNSAYLDRPLI--AGLAPETLSGHIG 368 (713)
T ss_pred CCCC---------------------------------CCcCcHHHHHHHHHHcCCeEEEeccccc--cccCCCCHHHHHH
Confidence 7653 5899999999999999999999976554 8999999999999
Q ss_pred HHHHHhccchhHhhhhccccccccCCCCCcccceeeeecchhhhhHHHHHHHHHHhHHHHhhcCcccccchhHHHHHHHH
Q 001369 830 QVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIG 909 (1091)
Q Consensus 830 QR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~vs~~~~l~fi~ 909 (1091)
||.||++|++|+++. .+|++ .+++++.||++|+++++||+.++++++|+++|++++++|..+++.... .+++
T Consensus 369 Qr~RWa~G~~qi~~~-~~pl~---~~gl~~~qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~~----~~~~ 440 (713)
T TIGR03030 369 QRIRWAQGMMQIFRL-DNPLL---KRGLSFPQRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNIFVASAL----EILA 440 (713)
T ss_pred HHHHHhcChHHHHhh-hCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeCCHH----HHHH
Confidence 999999999999975 48987 689999999999999999999999999999999999999998886321 2223
Q ss_pred HHHHHHHHHHHHhh-ccCcccccccccchhhhhhhhhHHHHHHHHHHHHHhcCCccceEeCcCCCCCCcccceeeccccc
Q 001369 910 LFISIAATGILEMQ-WGGVGIDDWWRNEQFWVIGGASSHFFALFQGLLKVLAGVSTNFTVTSKGADDGEFSELYLFKWTS 988 (1091)
Q Consensus 910 lfls~~l~~~Le~~-wsG~sl~~wWrneq~W~I~~~sa~LfAv~~aLlkvL~g~~~~F~VTpK~~~~~~~~~ly~f~ws~ 988 (1091)
+++++++.+++.+. ..|.....||+ |.|..+ ...+.+...+.+.|++++.+|+||+|++..+.. .+ +.
T Consensus 441 ~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~F~VT~Kg~~~~~~----~~--~~ 509 (713)
T TIGR03030 441 YALPHMLHSLLTNSYLFGRVRWPFWS-EVYETV----LAVYLLPPVLVTLLNPKKPKFNVTPKGELLDED----YF--SP 509 (713)
T ss_pred HHHHHHHHHHHHHHHHcCCeecchHH-HHHHHH----HHHHHHHHHHHHHhCcCCCCceecCCCcccccc----cc--ch
Confidence 33455555555433 34544567774 554322 222444555666788999999999999753221 02 25
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 001369 989 LLIPPTTLFIINVVGVVVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLL 1044 (1091)
Q Consensus 989 LliP~~~LllLnlvaiv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~PflkgL~ 1044 (1091)
+++|+++++++|++|+++|+++.+... ....+.+++.+|.++|++-+..++.
T Consensus 510 ~~~p~~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~w~~~n~~~~~~~~~ 561 (713)
T TIGR03030 510 LSRPYLILFALILAGLAFGLYRIYGYP----IERGVLLVVLGWNLLNLILLGAALA 561 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc----cccchhhHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999986433 2234567999999999998877774
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=5.2e-65 Score=622.57 Aligned_cols=472 Identities=26% Similarity=0.421 Sum_probs=373.0
Q ss_pred HHHHHHHHHHHHHhhhcccccch----hHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhHhHhhhhhccCCCCCCCc
Q 001369 285 IIILRLVILGLFFHYRILHPVNN----AYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGKPSQLA 360 (1091)
Q Consensus 285 ~i~~~l~~l~~yl~wRi~~~~~~----a~~~Wl~~~~~E~~f~~~wiL~~~~kw~Pv~R~t~~drL~~r~e~~~~~~~lP 360 (1091)
++++.+++.++|++||++.+++. +..+.++++++|+++.++.++..+..+.|..|++. ..+...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~--------~~~~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPV--------PLPKDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC--------CCCcccCCCC
Confidence 56677788899999999987662 34556778999999999888888888778877532 1222345789
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCcccc
Q 001369 361 KVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWY 440 (1091)
Q Consensus 361 ~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe~Y 440 (1091)
.|||+||||| ||+.++.+|+.+++++|||.+|+.|||+|||.++- +.
T Consensus 261 ~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~-------t~----------------------- 307 (852)
T PRK11498 261 TVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREE-------FR----------------------- 307 (852)
T ss_pred cEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChH-------HH-----------------------
Confidence 9999999997 99999999999999999999999999999998761 10
Q ss_pred cccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCcC
Q 001369 441 FSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRD 520 (1091)
Q Consensus 441 Fs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g~~d 520 (1091)
+ ++++
T Consensus 308 ----------------------------~-------la~~---------------------------------------- 312 (852)
T PRK11498 308 ----------------------------Q-------FAQE---------------------------------------- 312 (852)
T ss_pred ----------------------------H-------HHHH----------------------------------------
Confidence 1 1100
Q ss_pred CCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCccEEEE
Q 001369 521 VEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGKKICYV 599 (1091)
Q Consensus 521 ~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff-~Dp~~g~~va~V 599 (1091)
.++.|+.|++ |.|+||||+|++++. ++||||+++||||+ +.+++|+++|++| .|| ++|+|
T Consensus 313 ------~~v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~VglV 373 (852)
T PRK11498 313 ------VGVKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAMM 373 (852)
T ss_pred ------CCcEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEEE
Confidence 0378899876 678999999999996 79999999999999 6999999999865 788 89999
Q ss_pred ecCccccCCCCcc-------ccccchhhhhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCcc
Q 001369 600 QFPQRFDGIDRHD-------RYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWC 672 (1091)
Q Consensus 600 Q~PQ~F~nid~~D-------r~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~ 672 (1091)
|+||.|+|.|+.+ .+.+++..||+..++|+|.+++.++|||++++||+||
T Consensus 374 Qtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL----------------------- 430 (852)
T PRK11498 374 QTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL----------------------- 430 (852)
T ss_pred EcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH-----------------------
Confidence 9999999987643 2456788999999999999999999999999999887
Q ss_pred ccccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCC
Q 001369 673 CLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVT 752 (1091)
Q Consensus 673 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~ 752 (1091)
+|+||++
T Consensus 431 -------------------------------------------------------------------------eeVGGfd 437 (852)
T PRK11498 431 -------------------------------------------------------------------------DEIGGIA 437 (852)
T ss_pred -------------------------------------------------------------------------HHhcCCC
Confidence 3578876
Q ss_pred CchhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHH
Q 001369 753 GDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVL 832 (1091)
Q Consensus 753 ~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~ 832 (1091)
+ +++|||++++++||++||+++|++++.+ .|++|+|++++++||.
T Consensus 438 ~---------------------------------~titED~dlslRL~~~Gyrv~yl~~~~a--~glaPesl~~~~~QR~ 482 (852)
T PRK11498 438 V---------------------------------ETVTEDAHTSLRLHRRGYTSAYMRIPQA--AGLATESLSAHIGQRI 482 (852)
T ss_pred C---------------------------------CccCccHHHHHHHHHcCCEEEEEeccce--eEECCCCHHHHHHHHH
Confidence 4 5899999999999999999999976665 7999999999999999
Q ss_pred HHhccchhHhhhhccccccccCCCCCcccceeeeecchhhhhHHHHHHHHHHhHHHHhhcCcccccchhHHHHHHHHHHH
Q 001369 833 RWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFI 912 (1091)
Q Consensus 833 RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~vs~~~~l~fi~lfl 912 (1091)
||++|++|+++ +++|++ +++|++.||++|+++++|++.+++.++|+++|++|+++|..++.+... . ++++++
T Consensus 483 RWarG~lQi~r-~~~pl~---~~gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a~~~---~-i~~y~l 554 (852)
T PRK11498 483 RWARGMVQIFR-LDNPLT---GKGLKLAQRLCYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYAPAL---M-IALFVL 554 (852)
T ss_pred HHHHHHHHHHH-HhChhc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeCChH---H-HHHHHH
Confidence 99999999996 468987 789999999999999999999999999999999999999988754221 1 122223
Q ss_pred HHHHHHHHHhh-ccCcccccccccchhhhhhhhhHHHHHHHHHHHHHhcCCccceEeCcCCCCCCcccceeecccccchh
Q 001369 913 SIAATGILEMQ-WGGVGIDDWWRNEQFWVIGGASSHFFALFQGLLKVLAGVSTNFTVTSKGADDGEFSELYLFKWTSLLI 991 (1091)
Q Consensus 913 s~~l~~~Le~~-wsG~sl~~wWrneq~W~I~~~sa~LfAv~~aLlkvL~g~~~~F~VTpK~~~~~~~~~ly~f~ws~Lli 991 (1091)
++++...+... .+|.....||+ |.| ..+.++.++ ...+...+++++.+|+||+|++..+.. .|+|. +..
T Consensus 555 P~~~~~~l~~~~~~g~~r~~~ws-eiy---e~v~a~~l~-~~~~~~ll~p~~~~F~VTpKg~~~~~~----~~~~~-~~~ 624 (852)
T PRK11498 555 PHMIHASLTNSRIQGKYRHSFWS-EIY---ETVLAWYIA-PPTTVALFNPHKGKFNVTAKGGLVEEE----YVDWV-ISR 624 (852)
T ss_pred HHHHHHHHHHHHhcCcchHhHHH-HHH---HHHHHHHHH-HHHHHHHcCccCCCcccCCCCcccccc----ceehH-HHH
Confidence 44333333332 23333344553 333 223333333 233444778899999999998753321 25665 678
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 001369 992 PPTTLFIINVVGVVVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGL 1043 (1091)
Q Consensus 992 P~~~LllLnlvaiv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~PflkgL 1043 (1091)
|+++++++|++|+++|+++.+.+.. ....+.+++++|+++|++-+..++
T Consensus 625 P~~~L~~L~l~gl~~g~~r~~~~~~---~~~~~~~~~~~W~~~nl~~l~~a~ 673 (852)
T PRK11498 625 PYIFLVLLNLVGVAVGIWRYFYGPP---NEILTVIVSLVWVFYNLIILGGAV 673 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCc---ccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999865321 233456799999999988777666
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=1.3e-44 Score=319.28 Aligned_cols=80 Identities=78% Similarity=1.459 Sum_probs=42.1
Q ss_pred cccccccCCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccccCCCCcCCCCCcCCcC
Q 001369 28 IKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDID 107 (1091)
Q Consensus 28 ~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~kg~prv~gd~ee~~~~ 107 (1091)
+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||||||+|
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeeedd~d 80 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEEDDVD 80 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-----S-
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998876
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=2.3e-35 Score=357.67 Aligned_cols=355 Identities=17% Similarity=0.191 Sum_probs=239.1
Q ss_pred hHHHHHHHHHHHHHHHhhhcccccch-h--------HHHHHHHHHHHHHHHHHHHHhhcCcccccccchhHhHhhhhhcc
Q 001369 282 YRLIIILRLVILGLFFHYRILHPVNN-A--------YALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEK 352 (1091)
Q Consensus 282 yR~~i~~~l~~l~~yl~wRi~~~~~~-a--------~~~Wl~~~~~E~~f~~~wiL~~~~kw~Pv~R~t~~drL~~r~e~ 352 (1091)
.|+++++..++...|..|+....+.. . ..+-.+++..+.+.+.+-+++.+.... .|... .+...-..
T Consensus 41 rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~~ 116 (691)
T PRK05454 41 RRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAAG 116 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCccccc
Confidence 57777777778889999988764321 1 111222333344433333444332211 11111 01000001
Q ss_pred CCCCCCCcceEEEEecCCCCCCCHHHH----HHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhh
Q 001369 353 EGKPSQLAKVDIFVSTVDPMKEPPLIT----ANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCK 428 (1091)
Q Consensus 353 ~~~~~~lP~VDvfV~T~dP~kEPp~v~----~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCk 428 (1091)
+......|.|+|+||+|| |++..+ ..|+.|+.+.||| +++.+||+|||.++-+-.
T Consensus 117 ~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~----------------- 175 (691)
T PRK05454 117 DPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA----------------- 175 (691)
T ss_pred CCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH-----------------
Confidence 123456899999999998 998754 5556677789998 589999999998872111
Q ss_pred hcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcch
Q 001369 429 KFNIEPRAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGM 508 (1091)
Q Consensus 429 k~~IepR~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~i 508 (1091)
.|+ +.++++ .++. +
T Consensus 176 -----------------------------~e~----~~~~~L-------~~~~---~----------------------- 189 (691)
T PRK05454 176 -----------------------------AEE----AAWLEL-------RAEL---G----------------------- 189 (691)
T ss_pred -----------------------------HHH----HHHHHH-------HHhc---C-----------------------
Confidence 011 122232 2110 0
Q ss_pred hhhhhcCCCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhc
Q 001369 509 IQVFLGQSGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM 588 (1091)
Q Consensus 509 iqv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~ 588 (1091)
.-+++.|..|++ |.|+||||+|.+++.++ .+++||++||||++ +.+++|++++.+|.
T Consensus 190 ----------------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m~ 246 (691)
T PRK05454 190 ----------------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLME 246 (691)
T ss_pred ----------------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHHh
Confidence 003699999887 77889999999999765 67899999999999 58999999999885
Q ss_pred -CCCCCccEEEEecCccccCCCCc-ccccc-chhhhhhhhccccccCCC--ccccccCcchhhhhhcCCCCCccCCCCCC
Q 001369 589 -DPQSGKKICYVQFPQRFDGIDRH-DRYSN-RNVVFFDINMKGLDGIQG--PIYVGTGCVFRRQALYGYDAPVKKKSPGK 663 (1091)
Q Consensus 589 -Dp~~g~~va~VQ~PQ~F~nid~~-Dr~~n-~~~vFfdi~~~gldg~qg--p~yvGTgcvfRR~ALyG~~p~~~~~~~~~ 663 (1091)
|| ++|.||+|+.+.|.+.- .|..+ ...++.++...|++.+|+ ..|+|+|+++||+|+..
T Consensus 247 ~dP----~vGlVQt~~~~~n~~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~------------ 310 (691)
T PRK05454 247 ANP----RAGLIQTLPVAVGADTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAE------------ 310 (691)
T ss_pred hCc----CEEEEeCCccCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHH------------
Confidence 98 89999999999886521 11111 134555566788887773 56899999999998841
Q ss_pred CCCCCCCccccccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhh
Q 001369 664 TCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDS 743 (1091)
Q Consensus 664 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S 743 (1091)
T Consensus 311 -------------------------------------------------------------------------------- 310 (691)
T PRK05454 311 -------------------------------------------------------------------------------- 310 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcCCCCCchhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCC
Q 001369 744 SLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPIN 823 (1091)
Q Consensus 744 ~l~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~t 823 (1091)
.||.|.- . ..-||..++++||+++|.+|+++||+++|+++ ...+++++|+|
T Consensus 311 ----~~glp~L------------------~------g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd-~~~~~ee~P~t 361 (691)
T PRK05454 311 ----HCGLPPL------------------P------GRGPFGGHILSHDFVEAALMRRAGWGVWLAPD-LPGSYEELPPN 361 (691)
T ss_pred ----hcCCccc------------------c------ccCCCCCCcccHHHHHHHHHHHCCCEEEEcCc-cccccccCCCC
Confidence 1222110 0 00134446899999999999999999999954 33348999999
Q ss_pred HHHHHHHHHHHhccchhHhhhhccccccccCCCCCcccceeeeecchhhhhHHHHHHHH
Q 001369 824 LSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYC 882 (1091)
Q Consensus 824 l~~~lkQR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRl~Yl~~~ly~l~sl~~liyl 882 (1091)
+.++++||.||++|++|++.. +. .+++++.+|++|++.++.++.+...++++
T Consensus 362 l~~~~~qr~RW~~G~lQ~l~~----l~---~~gl~~~~R~~~l~g~~~yl~~P~wll~l 413 (691)
T PRK05454 362 LLDELKRDRRWCQGNLQHLRL----LL---AKGLHPVSRLHFLTGIMSYLSAPLWLLFL 413 (691)
T ss_pred HHHHHHHHHHHHhchHHHHHH----HH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998752 23 57899999999988777666654444433
No 15
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=3.2e-33 Score=304.16 Aligned_cols=182 Identities=21% Similarity=0.300 Sum_probs=145.0
Q ss_pred CcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCccEEEEecCccc
Q 001369 527 PSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYVQFPQRF 605 (1091)
Q Consensus 527 P~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~-Dp~~g~~va~VQ~PQ~F 605 (1091)
++++|+.|++ ++|+||||||++++..+ ++++||+++|||+. +.|++|++++.+|. || +||.||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4799999999 56679999999998532 58899999999999 68999999999885 98 89999999999
Q ss_pred cCCCCc-ccc-ccchhhhhhhhccccccCCC--ccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccccCCccc
Q 001369 606 DGIDRH-DRY-SNRNVVFFDINMKGLDGIQG--PIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKN 681 (1091)
Q Consensus 606 ~nid~~-Dr~-~n~~~vFfdi~~~gldg~qg--p~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 681 (1091)
.|.+.- .+. +-.+..|..+.+.|++.+++ .+|+||+.++||+||... |
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~----------------------~------ 187 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH----------------------C------ 187 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh----------------------c------
Confidence 987632 111 11245667778888887765 588999999999998411 0
Q ss_pred ccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCchhhhhHH
Q 001369 682 KKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLL 761 (1091)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~ 761 (1091)
.+.++||+.
T Consensus 188 --------------------------------------------------------------~~~~i~g~g--------- 196 (254)
T cd04191 188 --------------------------------------------------------------ALPVLPGRP--------- 196 (254)
T ss_pred --------------------------------------------------------------CCccccCCC---------
Confidence 001234431
Q ss_pred HHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhccchh
Q 001369 762 KEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVE 840 (1091)
Q Consensus 762 ~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQ 840 (1091)
||..++++||+++|++++.+||+++|.+... +.++++|+|++++++||.||++|++|
T Consensus 197 ---------------------~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~-~~~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 197 ---------------------PFGGHILSHDFVEAALMRRAGWEVRLAPDLE-GSYEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred ---------------------CCCCCeecHHHHHHHHHHHcCCEEEEccCCc-ceEeECCCCHHHHHHHHHHHHhhcCc
Confidence 4556799999999999999999999995533 23789999999999999999999998
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=9.4e-30 Score=291.44 Aligned_cols=233 Identities=30% Similarity=0.446 Sum_probs=170.9
Q ss_pred CcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCcc
Q 001369 359 LAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPE 438 (1091)
Q Consensus 359 lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe 438 (1091)
+|.|||+||+|| |++.++.+|+.|++++|||. +.++|.|||+++-|++-+ ++++.+
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~--------------~~~~~~----- 108 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEIL--------------EELGAE----- 108 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHH--------------HHHHhh-----
Confidence 699999999997 99999999999999999995 789999999987444421 111100
Q ss_pred cccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCC
Q 001369 439 WYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGV 518 (1091)
Q Consensus 439 ~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g~ 518 (1091)
| ++ .+
T Consensus 109 ----------------------------~-----------------~~---------------------~~--------- 113 (439)
T COG1215 109 ----------------------------Y-----------------GP---------------------NF--------- 113 (439)
T ss_pred ----------------------------c-----------------Cc---------------------ce---------
Confidence 0 00 00
Q ss_pred cCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEE
Q 001369 519 RDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICY 598 (1091)
Q Consensus 519 ~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~ 598 (1091)
.++|. ++ .++.|+||+|.++.. +.+|+|+++|||++ +.+++|++++..|.|+. .+|.
T Consensus 114 ---------~~~~~--~~----~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 114 ---------RVIYP--EK----KNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred ---------EEEec--cc----cCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 12211 22 678899999999985 56999999999999 69999999999999874 3479
Q ss_pred EecCccccCCCCccccccchh-----hhhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccc
Q 001369 599 VQFPQRFDGIDRHDRYSNRNV-----VFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCC 673 (1091)
Q Consensus 599 VQ~PQ~F~nid~~Dr~~n~~~-----vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~ 673 (1091)
+|.||.+.+.++....+..+. .|+-....+.++-...++.|++.+|||+||
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL------------------------ 226 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSAL------------------------ 226 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHH------------------------
Confidence 999999888764111111111 111111112222234555566665555555
Q ss_pred cccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCC
Q 001369 674 LCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTG 753 (1091)
Q Consensus 674 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~ 753 (1091)
++.||
T Consensus 227 ------------------------------------------------------------------------~~~g~--- 231 (439)
T COG1215 227 ------------------------------------------------------------------------EEVGG--- 231 (439)
T ss_pred ------------------------------------------------------------------------HHhCC---
Confidence 45564
Q ss_pred chhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHH
Q 001369 754 DLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLR 833 (1091)
Q Consensus 754 ~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~R 833 (1091)
|...++|||.++++++|.+|||++|++++.. ++++|+|+.++++||.|
T Consensus 232 ------------------------------~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~--~~~~p~t~~~~~~Qr~R 279 (439)
T COG1215 232 ------------------------------WLEDTITEDADLTLRLHLRGYRVVYVPEAIV--WTEAPETLKELWRQRLR 279 (439)
T ss_pred ------------------------------CCCCceeccHHHHHHHHHCCCeEEEeecceE--eeeCcccHHHHHHHHHH
Confidence 3446999999999999999999999976544 99999999999999999
Q ss_pred HhccchhHhhh
Q 001369 834 WALGSVEIFLS 844 (1091)
Q Consensus 834 WA~G~lQil~s 844 (1091)
|++|.+|++..
T Consensus 280 W~~g~~~~~~~ 290 (439)
T COG1215 280 WARGGLQVLLL 290 (439)
T ss_pred HHcccceeeeh
Confidence 99999999975
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.96 E-value=5.5e-28 Score=281.54 Aligned_cols=230 Identities=22% Similarity=0.250 Sum_probs=166.1
Q ss_pred CCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCC
Q 001369 357 SQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRA 436 (1091)
Q Consensus 357 ~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~ 436 (1091)
...|.|+|+||+|| |+. .+.+|+.|+++++|| ++.++|.|||.++-|.+.+.+
T Consensus 72 ~~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~--------------------- 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGL-NARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA--------------------- 124 (444)
T ss_pred CCCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 35799999999997 875 468999999999999 589999999988633322111
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCC
Q 001369 437 PEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQS 516 (1091)
Q Consensus 437 Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~ 516 (1091)
+.++
T Consensus 125 ----------------------------------------~~~~------------------------------------ 128 (444)
T PRK14583 125 ----------------------------------------LLAE------------------------------------ 128 (444)
T ss_pred ----------------------------------------HHHh------------------------------------
Confidence 1100
Q ss_pred CCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCcc
Q 001369 517 GVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGKK 595 (1091)
Q Consensus 517 g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff-~Dp~~g~~ 595 (1091)
.|++.++.++++ ..||+|+|++++. ++++||+++|+|++ ++|++|++.+-.| .|| +
T Consensus 129 ---------~~~v~vv~~~~n-----~Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~ 185 (444)
T PRK14583 129 ---------DPRLRVIHLAHN-----QGKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----R 185 (444)
T ss_pred ---------CCCEEEEEeCCC-----CCHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----C
Confidence 023555554442 2399999999985 68999999999999 6999999999865 566 8
Q ss_pred EEEEecCccccCCCCcccccc----chhhhhhhhccccccCCCccc-cccCcchhhhhhcCCCCCccCCCCCCCCCCCCC
Q 001369 596 ICYVQFPQRFDGIDRHDRYSN----RNVVFFDINMKGLDGIQGPIY-VGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPK 670 (1091)
Q Consensus 596 va~VQ~PQ~F~nid~~Dr~~n----~~~vFfdi~~~gldg~qgp~y-vGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~ 670 (1091)
++.||..++..+.+ ...+. +...++....++.+-.+..+. .|++++|||+||
T Consensus 186 ~g~v~g~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al--------------------- 242 (444)
T PRK14583 186 TGAVTGNPRIRTRS--TLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRAL--------------------- 242 (444)
T ss_pred eEEEEccceecCCC--cchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHH---------------------
Confidence 99999987765432 11111 222233333333333333322 244455555544
Q ss_pred ccccccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCC
Q 001369 671 WCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGG 750 (1091)
Q Consensus 671 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG 750 (1091)
+++||
T Consensus 243 ---------------------------------------------------------------------------~~vGg 247 (444)
T PRK14583 243 ---------------------------------------------------------------------------ADVGY 247 (444)
T ss_pred ---------------------------------------------------------------------------HHcCC
Confidence 45676
Q ss_pred CCCchhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHH
Q 001369 751 VTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQ 830 (1091)
Q Consensus 751 ~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQ 830 (1091)
++ .+.++||++++++++.+||++.|++... .++++|+|+.++++|
T Consensus 248 ~~---------------------------------~~~i~ED~dl~~rl~~~G~~i~~~p~a~--~~~~~p~t~~~~~~Q 292 (444)
T PRK14583 248 WS---------------------------------PDMITEDIDISWKLQLKHWSVFFEPRGL--CWILMPETLRGLWKQ 292 (444)
T ss_pred CC---------------------------------CCcccccHHHHHHHHHcCCeEEEeeccE--EeeeCCCCHHHHHHH
Confidence 54 3689999999999999999999996544 389999999999999
Q ss_pred HHHHhccchhHhhhh
Q 001369 831 VLRWALGSVEIFLSR 845 (1091)
Q Consensus 831 R~RWA~G~lQil~sk 845 (1091)
|.||++|.+|+++++
T Consensus 293 r~RW~~G~~~~~~~~ 307 (444)
T PRK14583 293 RLRWAQGGAEVFLKN 307 (444)
T ss_pred HHHHhCcHHHHHHHH
Confidence 999999999999764
No 18
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.95 E-value=9e-27 Score=271.27 Aligned_cols=124 Identities=16% Similarity=0.145 Sum_probs=91.4
Q ss_pred CCchHHhhhhhhhcCCCCCchhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhh-cCcEEEEecCCC
Q 001369 735 GQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHC-HGWRSVYCIPKR 813 (1091)
Q Consensus 735 G~s~~f~~S~l~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~-rGWrsvY~~p~~ 813 (1091)
|....|+++++++.||+++ ++++||++++++++. .|+++.|+++
T Consensus 217 Ga~~~~Rr~~l~~vggf~~---------------------------------~~i~ED~~l~~rl~~~~g~kv~~~~~-- 261 (439)
T TIGR03111 217 GAFSAFRRETILKTQLYNS---------------------------------ETVGEDTDMTFQIRELLDGKVYLCEN-- 261 (439)
T ss_pred cHHHhhhHHHHHHhCCCCC---------------------------------CCcCccHHHHHHHHHhcCCeEEECCC--
Confidence 4455677777778888754 589999999999985 5899999855
Q ss_pred ccccccCCCCHHHHHHHHHHHhccchhHhhhhccccccccCCCCCcccceeeeecchhhhhHHHHHHHHHHhHHHHhhcC
Q 001369 814 ACFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYCTLPAFCLLTGK 893 (1091)
Q Consensus 814 aaf~G~aP~tl~~~lkQR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~ 893 (1091)
+.++.++|+|++++++||.||++|.+|++.....+.. +.+..+.+++.+..........++.+++.++++++.+++.
T Consensus 262 a~~~~~~p~t~~~~~~QR~RW~rG~~qv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (439)
T TIGR03111 262 AIFYVDPIDGLNKLYTQRQRWQRGELEVSHMFFESAN---KSIKGFFSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGY 338 (439)
T ss_pred CEEEEECCcCHHHHHHHHHHHhccHHHHHHHHHhhhh---hchhhhhhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHhcc
Confidence 4458999999999999999999999999965433332 3345555555443344445556787888888888877775
Q ss_pred ccc
Q 001369 894 FIV 896 (1091)
Q Consensus 894 ~ii 896 (1091)
.+.
T Consensus 339 ~~~ 341 (439)
T TIGR03111 339 PVK 341 (439)
T ss_pred HHH
Confidence 444
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.95 E-value=1.7e-26 Score=265.64 Aligned_cols=231 Identities=24% Similarity=0.289 Sum_probs=164.2
Q ss_pred CCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001369 356 PSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPR 435 (1091)
Q Consensus 356 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR 435 (1091)
....|.|.|+||+|| |+ ..+.+|+.|+++++|| ++.++|.|||.++-|.+.+.
T Consensus 50 ~~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~--------------------- 102 (420)
T PRK11204 50 LKEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILD--------------------- 102 (420)
T ss_pred cCCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHH---------------------
Confidence 346899999999997 75 6789999999999999 57899999998763222111
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001369 436 APEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 515 (1091)
Q Consensus 436 ~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~ 515 (1091)
++++
T Consensus 103 ----------------------------------------~~~~------------------------------------ 106 (420)
T PRK11204 103 ----------------------------------------RLAA------------------------------------ 106 (420)
T ss_pred ----------------------------------------HHHH------------------------------------
Confidence 1110
Q ss_pred CCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCc
Q 001369 516 SGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGK 594 (1091)
Q Consensus 516 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff-~Dp~~g~ 594 (1091)
+.|++.++.++++. .||+|+|.+++. +++|||+++|+|.+ +.|++|++++..| .||
T Consensus 107 ---------~~~~v~~i~~~~n~-----Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~---- 163 (420)
T PRK11204 107 ---------QIPRLRVIHLAENQ-----GKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP---- 163 (420)
T ss_pred ---------hCCcEEEEEcCCCC-----CHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----
Confidence 01357777766533 399999999985 68999999999999 5899999999987 577
Q ss_pred cEEEEecCccccCCCCccccccchhhhh----hhhccccccCCCcc-ccccCcchhhhhhcCCCCCccCCCCCCCCCCCC
Q 001369 595 KICYVQFPQRFDGIDRHDRYSNRNVVFF----DINMKGLDGIQGPI-YVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWP 669 (1091)
Q Consensus 595 ~va~VQ~PQ~F~nid~~Dr~~n~~~vFf----di~~~gldg~qgp~-yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 669 (1091)
+++.||...+..|... ..+..+...| ....++..-.+... ..
T Consensus 164 ~v~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 210 (420)
T PRK11204 164 RVGAVTGNPRIRNRST--LLGRIQVGEFSSIIGLIKRAQRVYGRVFTVS------------------------------- 210 (420)
T ss_pred CeEEEECCceeccchh--HHHHHHHHHHHHhhhHHHHHHHHhCCceEec-------------------------------
Confidence 8999999877654321 1111111111 11111100000000 01
Q ss_pred CccccccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcC
Q 001369 670 KWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDG 749 (1091)
Q Consensus 670 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~G 749 (1091)
|....|++++++++|
T Consensus 211 -----------------------------------------------------------------G~~~~~rr~~l~~vg 225 (420)
T PRK11204 211 -----------------------------------------------------------------GVITAFRKSALHEVG 225 (420)
T ss_pred -----------------------------------------------------------------ceeeeeeHHHHHHhC
Confidence 333444555556677
Q ss_pred CCCCchhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHH
Q 001369 750 GVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLH 829 (1091)
Q Consensus 750 G~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lk 829 (1091)
|+++ +.++||++++++++.+||+++|+++... +++.|+|++++++
T Consensus 226 g~~~---------------------------------~~~~ED~~l~~rl~~~G~~i~~~p~~~~--~~~~p~t~~~~~~ 270 (420)
T PRK11204 226 YWST---------------------------------DMITEDIDISWKLQLRGWDIRYEPRALC--WILMPETLKGLWK 270 (420)
T ss_pred CCCC---------------------------------CcccchHHHHHHHHHcCCeEEeccccEE--EeECcccHHHHHH
Confidence 7643 5789999999999999999999966444 8999999999999
Q ss_pred HHHHHhccchhHhhhh
Q 001369 830 QVLRWALGSVEIFLSR 845 (1091)
Q Consensus 830 QR~RWA~G~lQil~sk 845 (1091)
||.||++|.+|.++++
T Consensus 271 Qr~RW~~G~~~~l~~~ 286 (420)
T PRK11204 271 QRLRWAQGGAEVLLKN 286 (420)
T ss_pred HHHHHhcCHHHHHHHH
Confidence 9999999999999754
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.93 E-value=3.9e-24 Score=252.47 Aligned_cols=263 Identities=19% Similarity=0.220 Sum_probs=176.4
Q ss_pred CCcceEEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCC
Q 001369 358 QLAKVDIFVSTVDPMKEPPLITANTVLSIL-AVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRA 436 (1091)
Q Consensus 358 ~lP~VDvfV~T~dP~kEPp~v~~nTvls~l-a~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~ 436 (1091)
..|.|+|+||++| |. .++.+||-|++ ++||| ++.|+|.||+..+-|.+.+.|
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~--------------------- 116 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDR--------------------- 116 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHH---------------------
Confidence 4899999999997 86 68999999975 78996 799999999887744443322
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCC
Q 001369 437 PEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQS 516 (1091)
Q Consensus 437 Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~ 516 (1091)
+++ .|
T Consensus 117 ----------------------------------------l~~------------------------~~----------- 121 (504)
T PRK14716 117 ----------------------------------------LAA------------------------RY----------- 121 (504)
T ss_pred ----------------------------------------HHH------------------------HC-----------
Confidence 110 01
Q ss_pred CCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhc--ccCC---CCEEEEecCCCCCChHHHHHHHHHhhcCCC
Q 001369 517 GVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSA--VLSN---APYLLNVDCDHYINNSKALREAMCFMMDPQ 591 (1091)
Q Consensus 517 g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSa--v~tn---~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~ 591 (1091)
|++..+. .+++| .+.||+|||.+++... -... .++|+++|||.+ ++|++|+....++.
T Consensus 122 ----------p~v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~--- 184 (504)
T PRK14716 122 ----------PRVHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLP--- 184 (504)
T ss_pred ----------CCeEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcC---
Confidence 1222222 12233 3579999999987521 0113 399999999999 59999997654443
Q ss_pred CCccEEEEecCccccCCCCccc----cccchhhhhhhhccccccCCCcc-ccccCcchhhhhhcCCCCCccCCCCCCCCC
Q 001369 592 SGKKICYVQFPQRFDGIDRHDR----YSNRNVVFFDINMKGLDGIQGPI-YVGTGCVFRRQALYGYDAPVKKKSPGKTCN 666 (1091)
Q Consensus 592 ~g~~va~VQ~PQ~F~nid~~Dr----~~n~~~vFfdi~~~gldg~qgp~-yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~ 666 (1091)
+.++||.|....+.+.+.- |..+....+...++.++.+++++ ..|+|++|||++|--
T Consensus 185 ---~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~--------------- 246 (504)
T PRK14716 185 ---RHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALER--------------- 246 (504)
T ss_pred ---CCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHH---------------
Confidence 3468999987665433221 22222222334466677787765 689999999988820
Q ss_pred CCCCccccccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhh
Q 001369 667 CWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLL 746 (1091)
Q Consensus 667 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~ 746 (1091)
...
T Consensus 247 -----------------------------------------------------------------------------l~~ 249 (504)
T PRK14716 247 -----------------------------------------------------------------------------LAA 249 (504)
T ss_pred -----------------------------------------------------------------------------HHh
Confidence 001
Q ss_pred hcCCCCCchhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCc------------
Q 001369 747 EDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRA------------ 814 (1091)
Q Consensus 747 e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~a------------ 814 (1091)
+.||. +|..+++|||+++|++++.+|||++|++.+..
T Consensus 250 ~~GG~-------------------------------~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~ 298 (504)
T PRK14716 250 ERGGQ-------------------------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEP 298 (504)
T ss_pred hcCCC-------------------------------CCCCCCcchHHHHHHHHHHCCCEEEEeccccccccccccccccc
Confidence 22431 25568999999999999999999999965421
Q ss_pred -cccccCCCCHHHHHHHHHHHhccc-hhHhhhhc--cccccccCCCCCcccceeeeec
Q 001369 815 -CFKGSAPINLSDRLHQVLRWALGS-VEIFLSRH--CPIWYGYGGGLKLLERFSYINS 868 (1091)
Q Consensus 815 -af~G~aP~tl~~~lkQR~RWA~G~-lQil~sk~--~Pl~~g~~~~L~~~QRl~Yl~~ 868 (1091)
+.++++|+|++++++||.||+.|. +|...+.- .++. .+-+.|++|.+.+..
T Consensus 299 v~t~e~~P~t~~a~~rQR~RW~~Gi~~Q~~~~~gw~~~~~---~~~~~~rdr~~~~~~ 353 (504)
T PRK14716 299 IATREFFPDTFKAAVRQKARWIYGIAFQGWERLGWKGPAA---TKYMLWRDRKGLLTN 353 (504)
T ss_pred ccccccCccCHHHHHHHHHHHHhchHHhhHHhcCCCCchh---hhhhHHHHHHHHHHH
Confidence 235889999999999999999995 78875321 1111 223556666665543
No 21
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.92 E-value=2.6e-24 Score=224.60 Aligned_cols=229 Identities=36% Similarity=0.571 Sum_probs=175.1
Q ss_pred cceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCccc
Q 001369 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEW 439 (1091)
Q Consensus 360 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe~ 439 (1091)
|.|.|+||++| |++..+..++-|+++.+||.+++.++|.|||.++-|.+-+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~-------------------------- 51 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA-------------------------- 51 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHH--------------------------
Confidence 67999999997 8888999999999999999988999999999875221110
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCc
Q 001369 440 YFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVR 519 (1091)
Q Consensus 440 YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g~~ 519 (1091)
+++..+
T Consensus 52 -----------------------------------~~~~~~--------------------------------------- 57 (234)
T cd06421 52 -----------------------------------AELGVE--------------------------------------- 57 (234)
T ss_pred -----------------------------------HHhhcc---------------------------------------
Confidence 011000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcC-CCCCccEEE
Q 001369 520 DVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD-PQSGKKICY 598 (1091)
Q Consensus 520 d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~D-p~~g~~va~ 598 (1091)
..+.|+.+++ +.+.|+||+|.+++. .+++||+.+|+|.++ .|++|.+.+..|.+ | +++.
T Consensus 58 -------~~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 58 -------YGYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHVP-TPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred -------cCceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccCc-CccHHHHHHHHHhcCC----CeEE
Confidence 0256666665 445699999999995 589999999999995 89999999999876 6 8999
Q ss_pred EecCccccCCCCcc----ccccchhhhhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCcccc
Q 001369 599 VQFPQRFDGIDRHD----RYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCL 674 (1091)
Q Consensus 599 VQ~PQ~F~nid~~D----r~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~ 674 (1091)
||+++.+.+.+..+ .+......|+.....+........+.|++.+|||+++
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~------------------------- 172 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREAL------------------------- 172 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHH-------------------------
Confidence 99999988776542 2233344455555544444445556666666666555
Q ss_pred ccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCc
Q 001369 675 CCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGD 754 (1091)
Q Consensus 675 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~ 754 (1091)
+++||++.
T Consensus 173 -----------------------------------------------------------------------~~ig~~~~- 180 (234)
T cd06421 173 -----------------------------------------------------------------------DEIGGFPT- 180 (234)
T ss_pred -----------------------------------------------------------------------HHhCCCCc-
Confidence 34677653
Q ss_pred hhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHH
Q 001369 755 LKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRW 834 (1091)
Q Consensus 755 ~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RW 834 (1091)
..+.||++++++++.+||+++|++.... ++..|.++.++++||.||
T Consensus 181 --------------------------------~~~~eD~~l~~r~~~~g~~i~~~~~~~~--~~~~~~~~~~~~~q~~rw 226 (234)
T cd06421 181 --------------------------------DSVTEDLATSLRLHAKGWRSVYVPEPLA--AGLAPETLAAYIKQRLRW 226 (234)
T ss_pred --------------------------------cceeccHHHHHHHHHcCceEEEecCccc--cccCCccHHHHHHHHHHH
Confidence 3568999999999999999999976554 899999999999999999
Q ss_pred hccchhHh
Q 001369 835 ALGSVEIF 842 (1091)
Q Consensus 835 A~G~lQil 842 (1091)
.+|.+|++
T Consensus 227 ~~~~~~~~ 234 (234)
T cd06421 227 ARGMLQIL 234 (234)
T ss_pred hcCCeeeC
Confidence 99999864
No 22
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.92 E-value=9.2e-24 Score=222.74 Aligned_cols=228 Identities=23% Similarity=0.335 Sum_probs=160.9
Q ss_pred cceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCccc
Q 001369 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEW 439 (1091)
Q Consensus 360 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe~ 439 (1091)
|.|.|+||+|| |. ..+..++-|+++++||.+++.|+|.|| ++.-|++.+.+. .
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~---~------------------- 53 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREI---V------------------- 53 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHH---H-------------------
Confidence 57999999997 75 678999999999999998899999998 555444432221 0
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCc
Q 001369 440 YFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVR 519 (1091)
Q Consensus 440 YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g~~ 519 (1091)
.+++ .
T Consensus 54 ----------------------------~~~~--------------~--------------------------------- 58 (232)
T cd06437 54 ----------------------------EEYA--------------A--------------------------------- 58 (232)
T ss_pred ----------------------------HHHh--------------h---------------------------------
Confidence 0000 0
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEE
Q 001369 520 DVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV 599 (1091)
Q Consensus 520 d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~V 599 (1091)
.-+++.++.+.+++|+ ||+|+|++++. .+++||+++|+|.+ +.|++|++++.++.|| ++++|
T Consensus 59 -----~~~~i~~~~~~~~~G~----k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTGY----KAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCCC----chHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 0135788888876665 99999999985 58999999999999 5899999977788887 89999
Q ss_pred ecCccccCCCCcc--ccc-cchhhhhhhhccccccCCCc-cccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccc
Q 001369 600 QFPQRFDGIDRHD--RYS-NRNVVFFDINMKGLDGIQGP-IYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLC 675 (1091)
Q Consensus 600 Q~PQ~F~nid~~D--r~~-n~~~vFfdi~~~gldg~qgp-~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c 675 (1091)
|....+.+.+.+- ++. -....+|.....+....... ..+|+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------------------------------- 167 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAG--------------------------------- 167 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchh---------------------------------
Confidence 9987665543221 100 00111222222222211111 1234444
Q ss_pred cCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCch
Q 001369 676 CGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDL 755 (1091)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~ 755 (1091)
.|++++++++||+++
T Consensus 168 ---------------------------------------------------------------~~rr~~~~~vgg~~~-- 182 (232)
T cd06437 168 ---------------------------------------------------------------VWRKECIEDAGGWNH-- 182 (232)
T ss_pred ---------------------------------------------------------------hhhHHHHHHhCCCCC--
Confidence 444455567788754
Q ss_pred hhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHh
Q 001369 756 KRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWA 835 (1091)
Q Consensus 756 ~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA 835 (1091)
.++.||+++++|++.+||+++|++... ++...|+|+.++++||+||+
T Consensus 183 -------------------------------~~~~ED~~l~~rl~~~G~~~~~~~~~~--v~~~~~~~~~~~~~q~~rW~ 229 (232)
T cd06437 183 -------------------------------DTLTEDLDLSYRAQLKGWKFVYLDDVV--VPAELPASMSAYRSQQHRWS 229 (232)
T ss_pred -------------------------------CcchhhHHHHHHHHHCCCeEEEeccce--eeeeCCcCHHHHHHHHHHhc
Confidence 357899999999999999999995433 48999999999999999999
Q ss_pred ccc
Q 001369 836 LGS 838 (1091)
Q Consensus 836 ~G~ 838 (1091)
+|.
T Consensus 230 ~g~ 232 (232)
T cd06437 230 KGP 232 (232)
T ss_pred cCC
Confidence 984
No 23
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.91 E-value=3.2e-23 Score=253.42 Aligned_cols=171 Identities=23% Similarity=0.384 Sum_probs=122.9
Q ss_pred ccchhhhHHHHHhhccc---CCC--CEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccCCCCccc----
Q 001369 543 HKKAGAMNALVRVSAVL---SNA--PYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDR---- 613 (1091)
Q Consensus 543 h~KAGamNallrvSav~---tn~--p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr---- 613 (1091)
+.||+|||.++....-. +.+ +.++++|||.+ ++|++|+ .+.+|+++ + ++||.|..-.+...+..
T Consensus 132 ~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~----~-~~VQ~p~~p~~~~~~~~~~~~ 204 (727)
T PRK11234 132 TSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER----K-DLIQIPVYPFEREWTHFTSGT 204 (727)
T ss_pred CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC----C-CeEeecccCCCccHHHHHHHH
Confidence 46999999998863100 133 56888999999 5999998 67888887 5 89999966332222211
Q ss_pred cccchhhhhhhhccccccCCCcc-ccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccccCCcccccccCcchhhh
Q 001369 614 YSNRNVVFFDINMKGLDGIQGPI-YVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKK 692 (1091)
Q Consensus 614 ~~n~~~vFfdi~~~gldg~qgp~-yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 692 (1091)
|..+....+...+++++.++|++ +.|+|++|.|++|
T Consensus 205 ~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l------------------------------------------- 241 (727)
T PRK11234 205 YIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV------------------------------------------- 241 (727)
T ss_pred HHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH-------------------------------------------
Confidence 22233334456678888887754 5688888844433
Q ss_pred hhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcC-CCCCchhhhhHHHHHHhhhccc
Q 001369 693 KKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDG-GVTGDLKRASLLKEAIQVISCG 771 (1091)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~G-G~~~~~~~~~~~~ea~~v~sC~ 771 (1091)
+++.+.| |+
T Consensus 242 --------------------------------------------------~al~~~ggg~-------------------- 251 (727)
T PRK11234 242 --------------------------------------------------TALLEDGDGI-------------------- 251 (727)
T ss_pred --------------------------------------------------HHHHHhcCCC--------------------
Confidence 1223444 43
Q ss_pred cccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCC---------------------ccccccCCCCHHHHHHH
Q 001369 772 YEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKR---------------------ACFKGSAPINLSDRLHQ 830 (1091)
Q Consensus 772 YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~---------------------aaf~G~aP~tl~~~lkQ 830 (1091)
+|..+++|||+++|++|+.+||+++|++.+. .++++..|+|+++.++|
T Consensus 252 -----------~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQ 320 (727)
T PRK11234 252 -----------AFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQ 320 (727)
T ss_pred -----------CcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHH
Confidence 5778999999999999999999999996221 33678899999999999
Q ss_pred HHHHhcc-chhHhhh
Q 001369 831 VLRWALG-SVEIFLS 844 (1091)
Q Consensus 831 R~RWA~G-~lQil~s 844 (1091)
|.||.+| .+|.+..
T Consensus 321 R~RW~~G~~~q~~~~ 335 (727)
T PRK11234 321 KSRWIIGIVFQGFKT 335 (727)
T ss_pred HHHHHcccHHHHHHH
Confidence 9999999 6888743
No 24
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.90 E-value=2.1e-22 Score=211.93 Aligned_cols=174 Identities=28% Similarity=0.407 Sum_probs=120.8
Q ss_pred cEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccC
Q 001369 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDG 607 (1091)
Q Consensus 528 ~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 607 (1091)
++.++..++.+| .||||+|.+++... .+++||+.+|+|-. ..|++|.+.+.+|.+| +++.||+++.+.+
T Consensus 57 ~i~~i~~~~~~G----~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~ 125 (236)
T cd06435 57 RFRFFHVEPLPG----AKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRD 125 (236)
T ss_pred cEEEEEcCCCCC----CchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccC
Confidence 356666665444 49999999998642 46899999999988 5899999999998777 8999999876543
Q ss_pred CCCcccccc----chhhhhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccccCCccccc
Q 001369 608 IDRHDRYSN----RNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKK 683 (1091)
Q Consensus 608 id~~Dr~~n----~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 683 (1091)
... ..+.- ....+|...++.....+..+..|++
T Consensus 126 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------------------------------------------ 162 (236)
T cd06435 126 GEE-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTM------------------------------------------ 162 (236)
T ss_pred CCc-cHHHHHHhHHHHHHHHHHhccccccCceEEecce------------------------------------------
Confidence 211 11100 0001111111111111222223333
Q ss_pred ccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCchhhhhHHHH
Q 001369 684 AKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKE 763 (1091)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~e 763 (1091)
..|+++++.++||+++
T Consensus 163 ------------------------------------------------------~~~rr~~~~~iGgf~~---------- 178 (236)
T cd06435 163 ------------------------------------------------------CLIRRSALDDVGGWDE---------- 178 (236)
T ss_pred ------------------------------------------------------EEEEHHHHHHhCCCCC----------
Confidence 3444555567788753
Q ss_pred HHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhccchhHhh
Q 001369 764 AIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFL 843 (1091)
Q Consensus 764 a~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQil~ 843 (1091)
....||++++++++.+||++.|++.... +...|.|+.++++||+||++|.+|++.
T Consensus 179 -----------------------~~~~eD~dl~~r~~~~G~~~~~~~~~~~--~~~~~~~~~~~~~q~~rw~~g~~~~~~ 233 (236)
T cd06435 179 -----------------------WCITEDSELGLRMHEAGYIGVYVAQSYG--HGLIPDTFEAFKKQRFRWAYGAVQILK 233 (236)
T ss_pred -----------------------ccccchHHHHHHHHHCCcEEEEcchhhc--cCcCcccHHHHHHHHHHHhcchhhhhh
Confidence 3568999999999999999999965443 899999999999999999999999986
Q ss_pred h
Q 001369 844 S 844 (1091)
Q Consensus 844 s 844 (1091)
+
T Consensus 234 ~ 234 (236)
T cd06435 234 K 234 (236)
T ss_pred c
Confidence 3
No 25
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.90 E-value=1.8e-22 Score=215.04 Aligned_cols=233 Identities=23% Similarity=0.292 Sum_probs=162.7
Q ss_pred cceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCccc
Q 001369 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEW 439 (1091)
Q Consensus 360 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe~ 439 (1091)
|.|.|+||++| |+ ..+..|+.|+++++||.+++.++|.|||.++-|.+-+.+
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~------------------------ 52 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA------------------------ 52 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH------------------------
Confidence 67999999997 76 778999999999999988899999999987633332110
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCc
Q 001369 440 YFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVR 519 (1091)
Q Consensus 440 YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g~~ 519 (1091)
+. . +.
T Consensus 53 -------------------------------------~~-~----~~--------------------------------- 57 (241)
T cd06427 53 -------------------------------------LR-L----PS--------------------------------- 57 (241)
T ss_pred -------------------------------------hc-c----CC---------------------------------
Confidence 00 0 00
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEE
Q 001369 520 DVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV 599 (1091)
Q Consensus 520 d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~V 599 (1091)
-.+++++.+.+ ...|++|+|++++. ++|+||+.+|+|.. ..|++|.+++.+|.+. ..++++|
T Consensus 58 ------~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 58 ------IFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred ------CeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEE
Confidence 01345544332 23599999999995 68999999999999 5899999999988621 1389999
Q ss_pred ecCccccCCCCcc--c-cccchhhhhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCcccccc
Q 001369 600 QFPQRFDGIDRHD--R-YSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCC 676 (1091)
Q Consensus 600 Q~PQ~F~nid~~D--r-~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~ 676 (1091)
|.+..+++...+- + +......+|+..+++....+.+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 161 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPL-------------------------------------- 161 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeec--------------------------------------
Confidence 9998877543210 0 0111111223333333322222211
Q ss_pred CCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCchh
Q 001369 677 GSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLK 756 (1091)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~ 756 (1091)
.|+...|++++++++||+.+
T Consensus 162 ---------------------------------------------------------~g~~~~~rr~~~~~vgg~~~--- 181 (241)
T cd06427 162 ---------------------------------------------------------GGTSNHFRTDVLRELGGWDP--- 181 (241)
T ss_pred ---------------------------------------------------------CCchHHhhHHHHHHcCCCCc---
Confidence 13333445555567787643
Q ss_pred hhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhc
Q 001369 757 RASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWAL 836 (1091)
Q Consensus 757 ~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~ 836 (1091)
...+||+++++|++.+||+++|++. . ++...|+|+.++++||.||+.
T Consensus 182 ------------------------------~~~~eD~~l~~rl~~~G~r~~~~~~-~--~~~~~~~~~~~~~~q~~Rw~~ 228 (241)
T cd06427 182 ------------------------------FNVTEDADLGLRLARAGYRTGVLNS-T--TLEEANNALGNWIRQRSRWIK 228 (241)
T ss_pred ------------------------------ccchhhHHHHHHHHHCCceEEEecc-c--ccccCcHhHHHHHHHHHHHhc
Confidence 3578999999999999999999943 3 378999999999999999999
Q ss_pred cchhHhhh
Q 001369 837 GSVEIFLS 844 (1091)
Q Consensus 837 G~lQil~s 844 (1091)
|.+|++..
T Consensus 229 g~~~~~~~ 236 (241)
T cd06427 229 GYMQTWLV 236 (241)
T ss_pred cHHHHHHH
Confidence 99999964
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.87 E-value=1.5e-22 Score=211.64 Aligned_cols=224 Identities=28% Similarity=0.427 Sum_probs=134.4
Q ss_pred cceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCccc
Q 001369 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEW 439 (1091)
Q Consensus 360 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe~ 439 (1091)
|.|.|+||++| |+. .+..||.|+++++|| ++.++|+||+..+-|.+.
T Consensus 1 P~v~Vvip~~~---~~~-~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~--------------------------- 47 (228)
T PF13641_consen 1 PRVSVVIPAYN---EDD-VLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEI--------------------------- 47 (228)
T ss_dssp --EEEE--BSS----HH-HHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTT---------------------------
T ss_pred CEEEEEEEecC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHH---------------------------
Confidence 77999999997 764 899999999999995 599999999977522111
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCc
Q 001369 440 YFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVR 519 (1091)
Q Consensus 440 YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g~~ 519 (1091)
+++++++ +|+
T Consensus 48 ----------------------------------~~~~~~~------------------------~~~------------ 57 (228)
T PF13641_consen 48 ----------------------------------LRALAAR------------------------YPR------------ 57 (228)
T ss_dssp ----------------------------------HHHHHHT------------------------TGG------------
T ss_pred ----------------------------------HHHHHHH------------------------cCC------------
Confidence 1112111 000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEE
Q 001369 520 DVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV 599 (1091)
Q Consensus 520 d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~V 599 (1091)
-++.|+.+.+.+| ...|++|+|.+++. ..+++|+++|+|.++ .|++|++++.+|.+| +++.|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~~-~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTVL-DPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEEE--CHHHHHHHHHHHBS----S--EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcEE-CHHHHHHHHHHHHhC----CCCeE
Confidence 0367777655221 23699999999996 569999999999995 999999999988888 89999
Q ss_pred ecCccccCCCCccccccchhhhhhh----hccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccc
Q 001369 600 QFPQRFDGIDRHDRYSNRNVVFFDI----NMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLC 675 (1091)
Q Consensus 600 Q~PQ~F~nid~~Dr~~n~~~vFfdi----~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c 675 (1091)
|++..+++ +.+ .+......++.. ...+....+.+++.|++++|||++|
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~-------------------------- 171 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSAL-------------------------- 171 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHH--------------------------
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHH--------------------------
Confidence 98886664 222 111111122111 1223333344455666666666655
Q ss_pred cCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCch
Q 001369 676 CGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDL 755 (1091)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~ 755 (1091)
.++||+++
T Consensus 172 ----------------------------------------------------------------------~~~g~fd~-- 179 (228)
T PF13641_consen 172 ----------------------------------------------------------------------EEVGGFDP-- 179 (228)
T ss_dssp ----------------------------------------------------------------------HHH-S--S--
T ss_pred ----------------------------------------------------------------------HHhCCCCC--
Confidence 45666543
Q ss_pred hhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHh
Q 001369 756 KRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWA 835 (1091)
Q Consensus 756 ~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA 835 (1091)
....||.+++++++.+||+++|++... .+...|.|++++++||.||+
T Consensus 180 -------------------------------~~~~eD~~l~~r~~~~G~~~~~~~~~~--v~~~~~~~~~~~~~q~~RW~ 226 (228)
T PF13641_consen 180 -------------------------------FILGEDFDLCLRLRAAGWRIVYAPDAL--VYHEEPSSLKAFFKQRFRWS 226 (228)
T ss_dssp -------------------------------SSSSHHHHHHHHHHHTT--EEEEEEEE--EEE--SSSTHHHHHHHHHHH
T ss_pred -------------------------------CCcccHHHHHHHHHHCCCcEEEECCcE--EEEeCCCCHHHHHHHHhccC
Confidence 367799999999999999999995433 48999999999999999999
Q ss_pred cc
Q 001369 836 LG 837 (1091)
Q Consensus 836 ~G 837 (1091)
.|
T Consensus 227 ~g 228 (228)
T PF13641_consen 227 RG 228 (228)
T ss_dssp --
T ss_pred cC
Confidence 87
No 27
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.82 E-value=3.3e-20 Score=199.52 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=46.7
Q ss_pred ccccchHHHHHHHhhcCcEEEE--ecCCCccccccCCCCHHHHHHHHHHHhccchh
Q 001369 787 GSVTEDILTGFKMHCHGWRSVY--CIPKRACFKGSAPINLSDRLHQVLRWALGSVE 840 (1091)
Q Consensus 787 gSITEDi~Tg~rLh~rGWrsvY--~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQ 840 (1091)
.+++||.+++++|..+||++.| ++... ++.++|+|+.++++||+||++|++.
T Consensus 190 ~~~~ED~~l~~~l~~~G~~~~~~~~~~a~--~~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 190 LDLGEDRILCTLLLKAGPKRKYLYVPGAV--AETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred HhHhcccceeHHHhccCCccEEEEecccE--EEEECCCCHHHHHHHhHhhhccccc
Confidence 5799999999999999999999 75444 3999999999999999999999874
No 28
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.81 E-value=9.1e-19 Score=200.12 Aligned_cols=234 Identities=17% Similarity=0.208 Sum_probs=154.5
Q ss_pred CCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCC
Q 001369 357 SQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRA 436 (1091)
Q Consensus 357 ~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~ 436 (1091)
...|.|.|+||++| |.+ .+.+++.|++++|||. +.++|.||+.++-|.+-+.
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~---------------------- 89 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVR---------------------- 89 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHH----------------------
Confidence 34899999999998 775 5679999999999995 7899999987653322110
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCC
Q 001369 437 PEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQS 516 (1091)
Q Consensus 437 Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~ 516 (1091)
++.++ ||.
T Consensus 90 ---------------------------------------~~~~~------------------------~p~--------- 97 (373)
T TIGR03472 90 ---------------------------------------RLRAD------------------------FPD--------- 97 (373)
T ss_pred ---------------------------------------HHHHh------------------------CCC---------
Confidence 11100 110
Q ss_pred CCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccE
Q 001369 517 GVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKI 596 (1091)
Q Consensus 517 g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~v 596 (1091)
.++.++.+.++.| .+.|++|+|.+++. ..+++|+.+|+|.. +.|++|++.+..|.|| ++
T Consensus 98 ----------~~i~~v~~~~~~G--~~~K~~~l~~~~~~----a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v 156 (373)
T TIGR03472 98 ----------ADIDLVIDARRHG--PNRKVSNLINMLPH----ARHDILVIADSDIS-VGPDYLRQVVAPLADP----DV 156 (373)
T ss_pred ----------CceEEEECCCCCC--CChHHHHHHHHHHh----ccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Cc
Confidence 1366665444333 45799999998874 68999999999999 5899999999999888 89
Q ss_pred EEEecCccccCCCCccccccchhhhhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCcccccc
Q 001369 597 CYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCC 676 (1091)
Q Consensus 597 a~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~ 676 (1091)
+.|+.+.+.. +... +.++.... ..+. .++-+. ... ...|.
T Consensus 157 ~~V~~~~~~~--~~~~-~~~~l~~~------~~~~---~~~~~~--~~~--~~~~~------------------------ 196 (373)
T TIGR03472 157 GLVTCLYRGR--PVPG-FWSRLGAM------GINH---NFLPSV--MVA--RALGR------------------------ 196 (373)
T ss_pred ceEeccccCC--CCCC-HHHHHHHH------Hhhh---hhhHHH--HHH--HhccC------------------------
Confidence 9999864322 1111 11110000 0000 000000 000 00000
Q ss_pred CCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCchh
Q 001369 677 GSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLK 756 (1091)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~ 756 (1091)
...-.|++..|++++++++||++..
T Consensus 197 -----------------------------------------------------~~~~~G~~~a~RR~~l~~iGGf~~~-- 221 (373)
T TIGR03472 197 -----------------------------------------------------ARFCFGATMALRRATLEAIGGLAAL-- 221 (373)
T ss_pred -----------------------------------------------------CccccChhhheeHHHHHHcCChHHh--
Confidence 0001366667777778889997531
Q ss_pred hhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhc
Q 001369 757 RASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWAL 836 (1091)
Q Consensus 757 ~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~ 836 (1091)
..+++||++++.+++.+||++.|.+.... +...|+|++++++||.||++
T Consensus 222 -----------------------------~~~~~ED~~l~~~i~~~G~~v~~~~~~v~--~~~~~~s~~~~~~q~~RW~r 270 (373)
T TIGR03472 222 -----------------------------AHHLADDYWLGELVRALGLRVVLAPVVVD--TDVHETSFATLLAHELRWSR 270 (373)
T ss_pred -----------------------------cccchHHHHHHHHHHHcCCeEEecchhhh--cCCCccCHHHHHHHHHHHHh
Confidence 14678999999999999999999854333 77888999999999999975
Q ss_pred c
Q 001369 837 G 837 (1091)
Q Consensus 837 G 837 (1091)
.
T Consensus 271 ~ 271 (373)
T TIGR03472 271 T 271 (373)
T ss_pred h
Confidence 3
No 29
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.80 E-value=8.4e-19 Score=181.88 Aligned_cols=171 Identities=16% Similarity=0.199 Sum_probs=113.3
Q ss_pred cEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccC
Q 001369 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDG 607 (1091)
Q Consensus 528 ~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 607 (1091)
++.++.++. + ....|+.|+|.++.. ++++||+++|+|.+ ..|++|.+.+..|.++ ..+.|+.++.+..
T Consensus 56 ~v~~~~~~~--~-~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~ 123 (229)
T cd04192 56 QLKILNNSR--V-SISGKKNALTTAIKA----AKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPVIYFK 123 (229)
T ss_pred ceEEeeccC--c-ccchhHHHHHHHHHH----hcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeeeeecC
Confidence 455555443 1 235689999999885 58999999999999 5899999999977665 6788888887762
Q ss_pred CCCc-cccccchhhhhhhhccccccCCCc-cccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccccCCccccccc
Q 001369 608 IDRH-DRYSNRNVVFFDINMKGLDGIQGP-IYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAK 685 (1091)
Q Consensus 608 id~~-Dr~~n~~~vFfdi~~~gldg~qgp-~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 685 (1091)
.+.. ..+......+......+..+++.+ +..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 156 (229)
T cd04192 124 GKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCN----------------------------------------------- 156 (229)
T ss_pred CccHHHHHHHHHHHHHHHHHhhHHHhcCccccc-----------------------------------------------
Confidence 1110 011100000011111111111111 112
Q ss_pred CcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCchhhhhHHHHHH
Q 001369 686 QPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAI 765 (1091)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~ea~ 765 (1091)
|.+..|+++++.++||+++.
T Consensus 157 -------------------------------------------------g~~~~~rr~~~~~~ggf~~~----------- 176 (229)
T cd04192 157 -------------------------------------------------GANMAYRKEAFFEVGGFEGN----------- 176 (229)
T ss_pred -------------------------------------------------cceEEEEHHHHHHhcCCccc-----------
Confidence 33334445555678887641
Q ss_pred hhhccccccccccccccCcccccccchHHHHHHHhhcCc-EEEEecCCCccccccCCCCHHHHHHHHHHHhcc
Q 001369 766 QVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGW-RSVYCIPKRACFKGSAPINLSDRLHQVLRWALG 837 (1091)
Q Consensus 766 ~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGW-rsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G 837 (1091)
....+||.++.++++.+|| ++.|+..+....+...|.+++++++||+||++|
T Consensus 177 --------------------~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 177 --------------------DHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred --------------------cccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 2467899999999999999 999986555556899999999999999999987
No 30
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.80 E-value=6e-18 Score=205.70 Aligned_cols=171 Identities=19% Similarity=0.303 Sum_probs=125.4
Q ss_pred ccchhhhHHHHHhh---cccCCCCE--EEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCcc-ccCCCCc---cc
Q 001369 543 HKKAGAMNALVRVS---AVLSNAPY--LLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQR-FDGIDRH---DR 613 (1091)
Q Consensus 543 h~KAGamNallrvS---av~tn~p~--Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~-F~nid~~---Dr 613 (1091)
..||.|||.++... .-.+.+.| |+++|||-+ ++|++|+. |-++++. + -+||.|-. ..|...+ ..
T Consensus 140 ~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~~ 212 (703)
T PRK15489 140 TCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR----K-DLVQLPVLSLERKWYEWVAGT 212 (703)
T ss_pred CCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC----c-ceeeeeeccCCCccccHHHHH
Confidence 45999999988752 11234455 999999999 69999986 5666653 1 36998721 1111111 23
Q ss_pred cccchhhhhhhhccccccCCCccc-cccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccccCCcccccccCcchhhh
Q 001369 614 YSNRNVVFFDINMKGLDGIQGPIY-VGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKK 692 (1091)
Q Consensus 614 ~~n~~~vFfdi~~~gldg~qgp~y-vGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 692 (1091)
|+.+....|+..|+++..+.|++. .|||++|||.||--
T Consensus 213 ~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~----------------------------------------- 251 (703)
T PRK15489 213 YMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLA----------------------------------------- 251 (703)
T ss_pred HHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHHH-----------------------------------------
Confidence 666777788888999999998876 67999999998820
Q ss_pred hhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCchhhhhHHHHHHhhhcccc
Q 001369 693 KKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGY 772 (1091)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~ea~~v~sC~Y 772 (1091)
+.+.||.
T Consensus 252 ----------------------------------------------------l~~~gg~--------------------- 258 (703)
T PRK15489 252 ----------------------------------------------------LMKERGN--------------------- 258 (703)
T ss_pred ----------------------------------------------------HHHhcCC---------------------
Confidence 1123331
Q ss_pred ccccccccccCcccccccchHHHHHHHhhcCcEEEEecC---------------------CCccccccCCCCHHHHHHHH
Q 001369 773 EDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIP---------------------KRACFKGSAPINLSDRLHQV 831 (1091)
Q Consensus 773 E~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p---------------------~~aaf~G~aP~tl~~~lkQR 831 (1091)
.+|+.+|+|||+++|+||+.+|||+.|+.- ...+.++..|.|+.+.++||
T Consensus 259 ---------~~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk 329 (703)
T PRK15489 259 ---------QPFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQK 329 (703)
T ss_pred ---------CCCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHH
Confidence 147789999999999999999999999321 12455788999999999999
Q ss_pred HHHhccch-hHhh
Q 001369 832 LRWALGSV-EIFL 843 (1091)
Q Consensus 832 ~RWA~G~l-Qil~ 843 (1091)
.||..|-. |-..
T Consensus 330 ~RW~~Gi~~q~~~ 342 (703)
T PRK15489 330 ARWVLGIAFQGWE 342 (703)
T ss_pred HHHHhHHHHhhHH
Confidence 99999987 7754
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.78 E-value=4e-18 Score=176.32 Aligned_cols=135 Identities=20% Similarity=0.218 Sum_probs=105.0
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccCC
Q 001369 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGI 608 (1091)
Q Consensus 529 lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~ni 608 (1091)
+.|+...++.| ...|++|+|++++. .+++|++++|+|.. ..|++|.+.+..+.+| +++.|+..
T Consensus 60 ~~~~~~~~~~g--~~~~~~~~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~------ 122 (196)
T cd02520 60 ARLLIGGEKVG--INPKVNNLIKGYEE----ARYDILVISDSDIS-VPPDYLRRMVAPLMDP----GVGLVTCL------ 122 (196)
T ss_pred EEEEecCCcCC--CCHhHHHHHHHHHh----CCCCEEEEECCCce-EChhHHHHHHHHhhCC----CCCeEEee------
Confidence 34444443222 23689999999985 68999999999998 4899999999988887 67888764
Q ss_pred CCccccccchhhhhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccccCCcccccccCcc
Q 001369 609 DRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPK 688 (1091)
Q Consensus 609 d~~Dr~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 688 (1091)
...|+++++||+++
T Consensus 123 ---------------------------~~~g~~~~~r~~~~--------------------------------------- 136 (196)
T cd02520 123 ---------------------------CAFGKSMALRREVL--------------------------------------- 136 (196)
T ss_pred ---------------------------cccCceeeeEHHHH---------------------------------------
Confidence 35577888887766
Q ss_pred hhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCchhhhhHHHHHHhhh
Q 001369 689 KDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVI 768 (1091)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~ea~~v~ 768 (1091)
+++||++..
T Consensus 137 ---------------------------------------------------------~~~ggf~~~-------------- 145 (196)
T cd02520 137 ---------------------------------------------------------DAIGGFEAF-------------- 145 (196)
T ss_pred ---------------------------------------------------------HhccChHHH--------------
Confidence 235665320
Q ss_pred ccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhc
Q 001369 769 SCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWAL 836 (1091)
Q Consensus 769 sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~ 836 (1091)
...+.||+++++++..+||++.|++.. ..+...|.+++++++||.||++
T Consensus 146 -----------------~~~~~eD~~l~~rl~~~G~~i~~~~~~--~~~~~~~~~~~~~~~q~~rw~~ 194 (196)
T cd02520 146 -----------------ADYLAEDYFLGKLIWRLGYRVVLSPYV--VMQPLGSTSLASFWRRQLRWSR 194 (196)
T ss_pred -----------------hHHHHHHHHHHHHHHHcCCeEEEcchh--eeccCCcccHHHHHHHHHHHhc
Confidence 124689999999999999999999653 3489999999999999999986
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.75 E-value=2.6e-17 Score=172.73 Aligned_cols=58 Identities=24% Similarity=0.164 Sum_probs=51.3
Q ss_pred ccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccCCC
Q 001369 543 HKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGID 609 (1091)
Q Consensus 543 h~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid 609 (1091)
..|++|+|.+++. +.++||+++|+|.+ +.|++|++++..|.|| +++.|+..+.+.+.+
T Consensus 63 ~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~ 120 (235)
T cd06434 63 PGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPR 120 (235)
T ss_pred CChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCc
Confidence 3499999999985 58999999999999 5899999999988887 899999998887664
No 33
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=4.2e-15 Score=170.57 Aligned_cols=220 Identities=20% Similarity=0.380 Sum_probs=152.7
Q ss_pred cEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCccEEEEecCcccc
Q 001369 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGKKICYVQFPQRFD 606 (1091)
Q Consensus 528 ~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff-~Dp~~g~~va~VQ~PQ~F~ 606 (1091)
++.|-.|.+ |...||||+....|..| +...|+++||||.+. ..+.+-+.+-.| .+| +.|.+||-..--
T Consensus 213 ~ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSvM-tgd~lvrLv~~ME~~P----~aGlIQt~P~~~ 281 (736)
T COG2943 213 NIFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADSVM-TGDCLVRLVRLMEANP----DAGLIQTSPKAS 281 (736)
T ss_pred ceeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeeccccc-CchHHHHHHHHHhhCC----CCceeecchhhc
Confidence 466766666 66779999999999987 788999999999996 788888888877 577 899999954433
Q ss_pred CCCCccccccchhhhhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccccCCcccccccC
Q 001369 607 GIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQ 686 (1091)
Q Consensus 607 nid~~Dr~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 686 (1091)
| ..|+|-++.|-+ ..+-||+ +=+|+ .+|.-
T Consensus 282 g---------g~TL~AR~qQFa-trvYGpl-----------~~~GL-------------awW~~---------------- 311 (736)
T COG2943 282 G---------GDTLYARCQQFA-TRVYGPL-----------FTAGL-------------AWWQL---------------- 311 (736)
T ss_pred C---------cchHHHHHHHHH-HHHhchH-----------Hhhhh-------------HHHhc----------------
Confidence 3 234444444322 1111111 11111 11210
Q ss_pred cchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCchhhhhHHHHHHh
Q 001369 687 PKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQ 766 (1091)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~ea~~ 766 (1091)
. | .+.+|++.+.+..+++|..|.|.-
T Consensus 312 ---------------------~-----------E----------s~yWGHNAIIRt~aF~~hcgLp~L------------ 337 (736)
T COG2943 312 ---------------------G-----------E----------SHYWGHNAIIRTKAFIEHCGLPPL------------ 337 (736)
T ss_pred ---------------------c-----------c----------cccccccceeechhhHHhcCCCCC------------
Confidence 0 0 124577777777777776666531
Q ss_pred hhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhccchhHhhhhc
Q 001369 767 VISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLSRH 846 (1091)
Q Consensus 767 v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQil~sk~ 846 (1091)
..+...|.+ .++.|+..+-.|.+.||. +++.+++...|++.|.|+.|++++-+||++|++|.+.
T Consensus 338 ------pG~~pFgG~------ilSHDfvEAALmRRaGW~-v~ia~dL~GSyEE~PpnLlD~l~RDRRWC~GNLqh~r--- 401 (736)
T COG2943 338 ------PGRGPFGGH------ILSHDFVEAALMRRAGWG-VWIAYDLDGSYEELPPNLLDELKRDRRWCHGNLQHFR--- 401 (736)
T ss_pred ------CCCCCCCcc------ccchHHHHHHHHhhcCce-EEEeccCCCchhhCCchHHHHHhhhhHhhhcchhhce---
Confidence 112223332 478999999999999994 4555778888999999999999999999999999763
Q ss_pred cccccccCCCCCcccceeeeecchhhhhHHHHHHHH
Q 001369 847 CPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYC 882 (1091)
Q Consensus 847 ~Pl~~g~~~~L~~~QRl~Yl~~~ly~l~sl~~liyl 882 (1091)
++ ..++|.+..|+.++.+++.|+++...+.++
T Consensus 402 --l~--~~~GlHwvsR~h~~tGVmsYlsaPlWfl~l 433 (736)
T COG2943 402 --LF--LVKGLHWVSRAHFLTGVMSYLSAPLWFLFL 433 (736)
T ss_pred --ee--ccCCccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34 268999999999998888777654444443
No 34
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.73 E-value=1.5e-16 Score=169.11 Aligned_cols=127 Identities=24% Similarity=0.328 Sum_probs=97.0
Q ss_pred CCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001369 356 PSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPR 435 (1091)
Q Consensus 356 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR 435 (1091)
....|.|.|+|||+| |+ ..+..++.|+++++||.+++.++|+|||.++-|.+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~---------------------- 78 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIA---------------------- 78 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHH----------------------
Confidence 456889999999997 65 6789999999999999888999999999876322211
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001369 436 APEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 515 (1091)
Q Consensus 436 ~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~ 515 (1091)
++ +.+
T Consensus 79 -----------------------------~~----------~~~------------------------------------ 83 (251)
T cd06439 79 -----------------------------RE----------YAD------------------------------------ 83 (251)
T ss_pred -----------------------------HH----------Hhh------------------------------------
Confidence 00 000
Q ss_pred CCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCcc
Q 001369 516 SGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKK 595 (1091)
Q Consensus 516 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~ 595 (1091)
. ++.++..+++. .|++|+|.+++. .++++|+.+|+|.++ .+++|++.+..|.++ +
T Consensus 84 ---------~--~v~~i~~~~~~-----g~~~a~n~gi~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 84 ---------K--GVKLLRFPERR-----GKAAALNRALAL----ATGEIVVFTDANALL-DPDALRLLVRHFADP----S 138 (251)
T ss_pred ---------C--cEEEEEcCCCC-----ChHHHHHHHHHH----cCCCEEEEEccccCc-CHHHHHHHHHHhcCC----C
Confidence 0 24445444433 499999999986 578999999999995 699999999998776 7
Q ss_pred EEEEecCccccCC
Q 001369 596 ICYVQFPQRFDGI 608 (1091)
Q Consensus 596 va~VQ~PQ~F~ni 608 (1091)
++.|+......+.
T Consensus 139 ~~~v~~~~~~~~~ 151 (251)
T cd06439 139 VGAVSGELVIVDG 151 (251)
T ss_pred ccEEEeEEEecCC
Confidence 8899987766543
No 35
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.68 E-value=2.3e-15 Score=173.00 Aligned_cols=133 Identities=22% Similarity=0.194 Sum_probs=92.8
Q ss_pred CCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001369 356 PSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPR 435 (1091)
Q Consensus 356 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR 435 (1091)
+...|+|.|+||++| |. ..+..++-|++++|||. ++.|+|.|||..+-|.+-+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 457899999999998 75 67889999999999995 589999999988733332111
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001369 436 APEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 515 (1091)
Q Consensus 436 ~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~ 515 (1091)
+.++ .|.
T Consensus 91 -----------------------------------------~~~~---~~~----------------------------- 97 (384)
T TIGR03469 91 -----------------------------------------AARA---YGR----------------------------- 97 (384)
T ss_pred -----------------------------------------HHHh---cCC-----------------------------
Confidence 1000 000
Q ss_pred CCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccC-CCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCc
Q 001369 516 SGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLS-NAPYLLNVDCDHYINNSKALREAMCFMMDPQSGK 594 (1091)
Q Consensus 516 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~t-n~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~ 594 (1091)
-+++.++..+.+|. .-..|+.|+|.+++.+.... .+++|+.+|+|.. .+|++|++++..+.++
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 01345554433332 34579999999999742111 2899999999999 5899999999998876
Q ss_pred cEEEEecC
Q 001369 595 KICYVQFP 602 (1091)
Q Consensus 595 ~va~VQ~P 602 (1091)
++++|...
T Consensus 162 ~~~~vs~~ 169 (384)
T TIGR03469 162 GLDLVSLM 169 (384)
T ss_pred CCCEEEec
Confidence 45566543
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.63 E-value=1.4e-14 Score=152.21 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=48.1
Q ss_pred ccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhccchhHhhh
Q 001369 789 VTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFLS 844 (1091)
Q Consensus 789 ITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQil~s 844 (1091)
..||.+++++++.+|+++.|++.... ....|.+++++++|+.||+.|..|++..
T Consensus 180 ~~eD~~l~~r~~~~G~~~~~~~~~~~--~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 180 RNEDAELNYRLRKAGYKIWLSPDIRV--YYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred ccchhHHHHHHHHcCcEEEEcCCeEE--EEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 46999999999999999999965444 6778899999999999999999999864
No 37
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.60 E-value=3.1e-15 Score=153.79 Aligned_cols=138 Identities=29% Similarity=0.400 Sum_probs=103.9
Q ss_pred EEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccCCCCccccccchhhhhhhhc----cccccCCC-cccc
Q 001369 564 YLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINM----KGLDGIQG-PIYV 638 (1091)
Q Consensus 564 ~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~----~gldg~qg-p~yv 638 (1091)
+|+++|+|.. +.+++|++++.+|.|| +++.||+|+.+++ .++...+.+..+|+... +..+..+. ....
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 5899999999 5799999999998888 8999999999863 34445555555553221 11112222 2345
Q ss_pred ccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccc
Q 001369 639 GTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETN 718 (1091)
Q Consensus 639 GTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1091)
|+|.++||+||
T Consensus 74 G~~~~~r~~~l--------------------------------------------------------------------- 84 (193)
T PF13632_consen 74 GSGMLFRREAL--------------------------------------------------------------------- 84 (193)
T ss_pred CcceeeeHHHH---------------------------------------------------------------------
Confidence 66666666655
Q ss_pred cCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCchhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHH
Q 001369 719 AEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFK 798 (1091)
Q Consensus 719 ~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~r 798 (1091)
+++||++. ..+++||++++++
T Consensus 85 ---------------------------~~vg~~~~--------------------------------~~~~~ED~~l~~~ 105 (193)
T PF13632_consen 85 ---------------------------REVGGFDD--------------------------------PFSIGEDMDLGFR 105 (193)
T ss_pred ---------------------------HHhCcccc--------------------------------cccccchHHHHHH
Confidence 35565430 4689999999999
Q ss_pred HhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhccc
Q 001369 799 MHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGS 838 (1091)
Q Consensus 799 Lh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~ 838 (1091)
+.++||++.|++.. .++.++|.|+.++++||+||+.|.
T Consensus 106 l~~~G~~~~~~~~~--~~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 106 LRRAGYRIVYVPDA--IVYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred HHHCCCEEEEeccc--ceeeeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999654 348999999999999999999998
No 38
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.46 E-value=3.6e-13 Score=139.48 Aligned_cols=115 Identities=16% Similarity=0.096 Sum_probs=80.9
Q ss_pred cEEEEeccCCCCCCcccchhhhHHHHHhhc-------ccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEe
Q 001369 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSA-------VLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQ 600 (1091)
Q Consensus 528 ~lvYvsRekRPg~~hh~KAGamNallrvSa-------v~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ 600 (1091)
++.++.++.. + ....|++|+|.+++.+. .-..+++|+++|+|.. ..|++|++++.+|.|| +++.||
T Consensus 51 ~v~~i~~~~~-~-~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~ 123 (191)
T cd06436 51 RVHLLRRHLP-N-ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQ 123 (191)
T ss_pred cEEEEeccCC-c-CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEe
Confidence 4666765421 1 12359999999998631 0012489999999999 5899999988899888 899999
Q ss_pred cCccccCCCCcc--cc-ccchhhhhhhhccccccCCCccccccCcchhhhhh
Q 001369 601 FPQRFDGIDRHD--RY-SNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 649 (1091)
Q Consensus 601 ~PQ~F~nid~~D--r~-~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~AL 649 (1091)
.+.++.|.+.+- ++ ..+...++.+++.++.......+.|+|++|||+||
T Consensus 124 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 124 SRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 999998865431 11 12233334456666665555557899999999888
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.33 E-value=5.3e-12 Score=129.20 Aligned_cols=102 Identities=20% Similarity=0.119 Sum_probs=64.1
Q ss_pred cccchhhhHHHHHhhc-ccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccCCCCccc---cccc
Q 001369 542 HHKKAGAMNALVRVSA-VLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDR---YSNR 617 (1091)
Q Consensus 542 hh~KAGamNallrvSa-v~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr---~~n~ 617 (1091)
+..|++|+|.+++... .-.++++++++|+|.. +.|++|++++..|.+. ...||......+.+.+-. +.-.
T Consensus 61 ~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~~~~~~~~~~~~ 134 (183)
T cd06438 61 RRGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPDDSWITRLYAFA 134 (183)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCccCHHHHHHHHH
Confidence 3459999999988631 1247999999999999 4799999999988653 346887766655432211 1111
Q ss_pred hhhhhhhhccccccCCCc-cccccCcchhhhhh
Q 001369 618 NVVFFDINMKGLDGIQGP-IYVGTGCVFRRQAL 649 (1091)
Q Consensus 618 ~~vFfdi~~~gldg~qgp-~yvGTgcvfRR~AL 649 (1091)
...++.+...++..+.+. .+.|+|.+|||++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l 167 (183)
T cd06438 135 FLVFNRLRPLGRSNLGLSCQLGGTGMCFPWAVL 167 (183)
T ss_pred HHHHHHHHHHHHHHcCCCeeecCchhhhHHHHH
Confidence 222233333344444443 34677777777666
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.33 E-value=2.5e-11 Score=124.39 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=49.1
Q ss_pred cEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCccEEEEecCccc
Q 001369 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGKKICYVQFPQRF 605 (1091)
Q Consensus 528 ~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff-~Dp~~g~~va~VQ~PQ~F 605 (1091)
.+.++..+.+. .++.|+|.+++. +.++||+.+|+|.+ ..|++|.+++-.+ .+| +++.|+.....
T Consensus 59 ~~~~~~~~~~~-----g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~ 123 (202)
T cd04184 59 RIKVVFREENG-----GISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADLIYSDEDK 123 (202)
T ss_pred CEEEEEcccCC-----CHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCEEEccHHh
Confidence 35555554433 479999999985 57899999999999 5899999999987 777 67777665443
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.28 E-value=8.2e-11 Score=120.79 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=51.9
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCccEEEEecCccccC
Q 001369 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYVQFPQRFDG 607 (1091)
Q Consensus 529 lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~-Dp~~g~~va~VQ~PQ~F~n 607 (1091)
+.|+.+++..| +++|+|.+++. +.++||+.+|+|.+ ..|++|.+++.+|. +| ++++|.......+
T Consensus 57 i~~i~~~~n~G-----~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 122 (201)
T cd04195 57 LKVVPLEKNRG-----LGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEFD 122 (201)
T ss_pred eEEEEcCcccc-----HHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEEC
Confidence 56677665444 89999999985 68999999999999 58999999999874 55 7888887665443
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.18 E-value=9.1e-11 Score=121.88 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=51.8
Q ss_pred cccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccCCC
Q 001369 542 HHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGID 609 (1091)
Q Consensus 542 hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid 609 (1091)
-+.|..||.++++. ...+++|+++|+|+.+ +|++|++.+.-|.|| +++.|..+.++.+.+
T Consensus 15 ~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~v-~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~ 74 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA---GAKYDYLVISDSDIRV-PPDYLRELVAPLADP----GVGLVTGLPRGVPAR 74 (175)
T ss_pred CChHHHHHHHHHHh---hCCCCEEEEECCCeeE-CHHHHHHHHHHHhCC----CCcEEEecccccCCc
Confidence 57899999999984 1689999999999995 899999999999999 899998877655443
No 43
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.11 E-value=1.5e-09 Score=109.82 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=42.8
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHH-hhcCCCCCccEEEEecCcccc
Q 001369 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMC-FMMDPQSGKKICYVQFPQRFD 606 (1091)
Q Consensus 544 ~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amc-ff~Dp~~g~~va~VQ~PQ~F~ 606 (1091)
.+++|+|.+++. .+++||+.+|+|-.+ .++.+.+.+. +..++ ++..|.....+.
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~~-~~~~~~~~~~~~~~~~----~~~~v~g~~~~~ 116 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDTL-LPGALLAVVAAFAEHP----EVDVVYGDVLLV 116 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCccc-CchHHHHHHHHHHhCC----CccEEEeeeEEE
Confidence 389999999985 689999999999995 7899999884 55666 566776665544
No 44
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.09 E-value=4.2e-11 Score=99.18 Aligned_cols=48 Identities=35% Similarity=1.043 Sum_probs=30.5
Q ss_pred ccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhc
Q 001369 39 CQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
|.+|.+++ +++|..|.+| ||+|.|||.||...++++++.||+||++||
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 67899997 8899999999 999999999999999989999999999996
No 45
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.04 E-value=3.7e-09 Score=108.81 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=49.6
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHh-hcCCCCCccEEEEecCcccc
Q 001369 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCF-MMDPQSGKKICYVQFPQRFD 606 (1091)
Q Consensus 529 lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcf-f~Dp~~g~~va~VQ~PQ~F~ 606 (1091)
++++..+++. .+++|+|.+++. .+++||+++|+|-+ ..|+.|.+.+.. +.+| +.+++.....+.
T Consensus 56 ~~~~~~~~~~-----G~~~~~n~g~~~----~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~ 120 (214)
T cd04196 56 IILIRNGKNL-----GVARNFESLLQA----ADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYSDLELV 120 (214)
T ss_pred EEEEeCCCCc-----cHHHHHHHHHHh----CCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEecCcEEE
Confidence 4555555443 489999999885 68999999999998 489999999997 5555 677788776544
No 46
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.01 E-value=1.2e-08 Score=113.10 Aligned_cols=109 Identities=19% Similarity=0.131 Sum_probs=82.1
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCccccccc
Q 001369 364 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQ 443 (1091)
Q Consensus 364 vfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe~YFs~ 443 (1091)
|+|||+| |++..+..||-|+++..||.....|+|.|||...-|.+.+.+
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~---------------------------- 50 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE---------------------------- 50 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH----------------------------
Confidence 7899998 877999999999999999865568999999987633322110
Q ss_pred ccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCcCCCC
Q 001369 444 KIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVRDVEG 523 (1091)
Q Consensus 444 ~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g~~d~~~ 523 (1091)
+ .. .
T Consensus 51 -------------------------~-------~~-~------------------------------------------- 54 (299)
T cd02510 51 -------------------------E-------YY-K------------------------------------------- 54 (299)
T ss_pred -------------------------H-------HH-h-------------------------------------------
Confidence 0 00 0
Q ss_pred CCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcC
Q 001369 524 NELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 589 (1091)
Q Consensus 524 ~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~D 589 (1091)
+..|.+.++..+++- .++.|.|.+++. +.|+||+.||+|..+ .+++|.+.+-.+..
T Consensus 55 ~~~~~v~vi~~~~n~-----G~~~a~N~g~~~----A~gd~i~fLD~D~~~-~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 KYLPKVKVLRLKKRE-----GLIRARIAGARA----ATGDVLVFLDSHCEV-NVGWLEPLLARIAE 110 (299)
T ss_pred hcCCcEEEEEcCCCC-----CHHHHHHHHHHH----ccCCEEEEEeCCccc-CccHHHHHHHHHHh
Confidence 011356666665533 378999999996 689999999999995 89999999997754
No 47
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.97 E-value=1.8e-08 Score=101.74 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=36.4
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCC
Q 001369 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDP 590 (1091)
Q Consensus 544 ~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp 590 (1091)
.|++|+|.+++. ++++||+.+|+|-. +.+++|++.+-++ ++
T Consensus 66 ~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 66 RKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred hHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 589999999985 68999999999998 5899999999887 54
No 48
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.97 E-value=1.6e-08 Score=105.17 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=34.1
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChh
Q 001369 362 VDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 407 (1091)
Q Consensus 362 VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 407 (1091)
|.|+||++| |+. .+..++.|+++..|+ ...|+|.|||...
T Consensus 1 vsvii~~~n---~~~-~l~~~l~sl~~q~~~--~~evivvdd~s~d 40 (221)
T cd02522 1 LSIIIPTLN---EAE-NLPRLLASLRRLNPL--PLEIIVVDGGSTD 40 (221)
T ss_pred CEEEEEccC---cHH-HHHHHHHHHHhccCC--CcEEEEEeCCCCc
Confidence 579999997 654 679999999999984 6789999999865
No 49
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.96 E-value=1.2e-08 Score=100.05 Aligned_cols=50 Identities=22% Similarity=0.181 Sum_probs=40.9
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCccEEEEecC
Q 001369 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYVQFP 602 (1091)
Q Consensus 544 ~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~-Dp~~g~~va~VQ~P 602 (1091)
.+++|+|.+++. .++++|+.+|+|.+ +.++++.+.+-.+. +| +++.|+..
T Consensus 61 g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~~~~~ 111 (166)
T cd04186 61 GFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQDP----DVGIVGPK 111 (166)
T ss_pred ChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhCC----CceEEEcc
Confidence 489999999985 48999999999999 58999999988554 44 67777655
No 50
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.89 E-value=2.1e-07 Score=111.22 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=45.9
Q ss_pred cccchHHHHHHHhhc--CcEEEEecCCCccccccCCCCHHHHHHHHHHHhccchhHhh
Q 001369 788 SVTEDILTGFKMHCH--GWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSVEIFL 843 (1091)
Q Consensus 788 SITEDi~Tg~rLh~r--GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQil~ 843 (1091)
.+.||=.++..|.++ |||..|+..+.+ +..+|+|++.+++||+||..|++-.++
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~A~a--~T~aP~t~~vflsQRRRWinSTi~Nl~ 379 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPSAVA--YTDAPETFSVFLSQRRRWINSTIHNLF 379 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEcccccc--cccCCccHHHHHHHhhhccchhHhhHh
Confidence 578998877777776 899999976665 899999999999999999999986544
No 51
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.87 E-value=2.2e-08 Score=105.55 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=46.3
Q ss_pred cEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHH---Hhh-cCCCCCccEEEEecCc
Q 001369 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAM---CFM-MDPQSGKKICYVQFPQ 603 (1091)
Q Consensus 528 ~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~am---cff-~Dp~~g~~va~VQ~PQ 603 (1091)
.+.++..++..| +|+|+|.+++.+.- .+++||+.+|+|.++ .|++|.++. -.+ .+| +++.+ .|+
T Consensus 48 ~i~~i~~~~n~G-----~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~-~~~~l~~l~~~~~~~~~~~----~~~~~-~~~ 115 (237)
T cd02526 48 KIELIHLGENLG-----IAKALNIGIKAALE-NGADYVLLFDQDSVP-PPDMVEKLLAYKILSDKNS----NIGAV-GPR 115 (237)
T ss_pred cEEEEECCCcee-----hHHhhhHHHHHHHh-CCCCEEEEECCCCCc-CHhHHHHHHHHHHhhccCC----CeEEE-eee
Confidence 466777665444 99999999986321 267999999999995 799999985 333 344 56654 455
Q ss_pred cc
Q 001369 604 RF 605 (1091)
Q Consensus 604 ~F 605 (1091)
..
T Consensus 116 ~~ 117 (237)
T cd02526 116 II 117 (237)
T ss_pred EE
Confidence 43
No 52
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.86 E-value=6.5e-08 Score=104.00 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=46.7
Q ss_pred cEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecC
Q 001369 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFP 602 (1091)
Q Consensus 528 ~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~P 602 (1091)
.+.++.+++..| |++|+|++++. ..++||+.+|+|.. .+|++|.+++-.+.++ +...|...
T Consensus 69 ~v~~~~~~~n~G-----~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 129 (243)
T PLN02726 69 RILLRPRPGKLG-----LGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT 129 (243)
T ss_pred cEEEEecCCCCC-----HHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc
Confidence 355665554333 89999999985 58999999999999 5999999999888665 45555543
No 53
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.86 E-value=6.1e-08 Score=100.05 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=47.0
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccc
Q 001369 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRF 605 (1091)
Q Consensus 529 lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F 605 (1091)
+.|+.-++.. ..+.++|.++...- ...++|++.+|+|.+ ..+++|++.+-.+.+| +++.| +|.++
T Consensus 53 i~~~~~~~n~-----g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~-~~~~~ 117 (202)
T cd04185 53 IVYLRLPENL-----GGAGGFYEGVRRAY-ELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFL-APLVL 117 (202)
T ss_pred eEEEECcccc-----chhhHHHHHHHHHh-ccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEe-cceeE
Confidence 4555555422 36888898887532 457899999999999 5899999999988776 56665 34343
No 54
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.86 E-value=4.3e-09 Score=102.39 Aligned_cols=111 Identities=16% Similarity=0.145 Sum_probs=75.8
Q ss_pred cEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccC
Q 001369 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDG 607 (1091)
Q Consensus 528 ~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 607 (1091)
++.|+.+++ +. .+++|+|.+++. ..++||+.+|+|.++ .+++|.+.+.++.+. +..+.+...+....+
T Consensus 54 ~i~~i~~~~----n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~~-~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPE----NL-GFSAARNRGIKH----AKGEYILFLDDDDII-SPDWLEELVEALEKN--PPDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCC----CS-HHHHHHHHHHHH------SSEEEEEETTEEE--TTHHHHHHHHHHHC--TTEEEEEEEEEEECT
T ss_pred ccccccccc----cc-cccccccccccc----cceeEEEEeCCCceE-cHHHHHHHHHHHHhC--CCcEEEEEEEEecCC
Confidence 588999986 33 699999999996 688899999999995 778999999999874 124444444444333
Q ss_pred CCCccccc--cchhhhhhhhccccccCCCccccccCcchhhhhhc
Q 001369 608 IDRHDRYS--NRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALY 650 (1091)
Q Consensus 608 id~~Dr~~--n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALy 650 (1091)
........ .....++............+.++|.+.++||++|-
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 166 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFE 166 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHH
Confidence 32222211 12233444445556667788999999999999883
No 55
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.80 E-value=9.2e-08 Score=100.47 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=34.7
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhh
Q 001369 364 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLT 409 (1091)
Q Consensus 364 vfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~lt 409 (1091)
|+||+|| + ...+..|+-|+++.+|| +.+.++|.|||...-|
T Consensus 1 ViIp~yn---~-~~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t 41 (219)
T cd06913 1 IILPVHN---G-EQWLDECLESVLQQDFE-GTLELSVFNDASTDKS 41 (219)
T ss_pred CEEeecC---c-HHHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccH
Confidence 5799997 4 46999999999999998 4689999999987633
No 56
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.77 E-value=6.4e-08 Score=93.90 Aligned_cols=108 Identities=26% Similarity=0.382 Sum_probs=66.4
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHH-hhcCCCCCccEEEEecCccccC
Q 001369 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMC-FMMDPQSGKKICYVQFPQRFDG 607 (1091)
Q Consensus 529 lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amc-ff~Dp~~g~~va~VQ~PQ~F~n 607 (1091)
++|+.+++..| |+.|+|.+++. .++++|+++|+|.++ .+++|.+.+. ++.++ +++.|...+...+
T Consensus 55 ~~~~~~~~~~g-----~~~~~n~~~~~----~~~~~i~~~D~D~~~-~~~~l~~~~~~~~~~~----~~~~v~~~~~~~~ 120 (180)
T cd06423 55 VLVVRDKENGG-----KAGALNAGLRH----AKGDIVVVLDADTIL-EPDALKRLVVPFFADP----KVGAVQGRVRVRN 120 (180)
T ss_pred EEEEEecccCC-----chHHHHHHHHh----cCCCEEEEECCCCCc-ChHHHHHHHHHhccCC----CeeeEeeeEEEec
Confidence 55565555444 99999999996 489999999999995 7999999944 55666 6677765544433
Q ss_pred CCCc--ccc-ccchhhhhhhhccccccCC-CccccccCcchhhhhhc
Q 001369 608 IDRH--DRY-SNRNVVFFDINMKGLDGIQ-GPIYVGTGCVFRRQALY 650 (1091)
Q Consensus 608 id~~--Dr~-~n~~~vFfdi~~~gldg~q-gp~yvGTgcvfRR~ALy 650 (1091)
...+ ..+ .......+.....+..... -..+.|++.++||++|.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (180)
T cd06423 121 GSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALR 167 (180)
T ss_pred CcCcceeccchheecceeeeeeehhheecceeecCchHHHHHHHHHH
Confidence 3211 100 0011111111112211112 25678889999999995
No 57
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.72 E-value=2.1e-07 Score=97.12 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=47.2
Q ss_pred cEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecC
Q 001369 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFP 602 (1091)
Q Consensus 528 ~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~P 602 (1091)
.+.++..++..| |++|+|.+++. ..++||+.+|+|.. ..|++|...+..+.++ +...|..+
T Consensus 54 ~i~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 54 RVRLIVRPGKRG-----LGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred ceEEEecCCCCC-----hHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 345555665444 89999999986 57899999999998 5899999999987766 44555554
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.52 E-value=1.3e-06 Score=91.43 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=45.7
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCc
Q 001369 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQ 603 (1091)
Q Consensus 529 lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ 603 (1091)
+.++..++..| |++|+|.+++. ..+++|+.+|+|-. ..++++.+.+..+.++ ....|..+.
T Consensus 59 i~~i~~~~n~G-----~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r 119 (211)
T cd04188 59 IRVLTLPKNRG-----KGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSR 119 (211)
T ss_pred EEEEEcccCCC-----cHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEe
Confidence 34555544334 89999999996 57899999999999 5899999999987654 344455543
No 59
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.51 E-value=1.8e-06 Score=98.22 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=82.0
Q ss_pred CCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCc
Q 001369 358 QLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAP 437 (1091)
Q Consensus 358 ~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~P 437 (1091)
..|.|.|+||+|| ++ ..+..++-|+++..|+ .+.|+|.|||..+-|.+-+
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~------------------------ 53 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIA------------------------ 53 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHH------------------------
Confidence 3578999999997 43 6889999999999997 5789999999876222211
Q ss_pred ccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCC
Q 001369 438 EWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSG 517 (1091)
Q Consensus 438 e~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g 517 (1091)
++| ++
T Consensus 54 ---------------------------~~~----------~~-------------------------------------- 58 (328)
T PRK10073 54 ---------------------------KHY----------AE-------------------------------------- 58 (328)
T ss_pred ---------------------------HHH----------Hh--------------------------------------
Confidence 111 10
Q ss_pred CcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCC
Q 001369 518 VRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDP 590 (1091)
Q Consensus 518 ~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp 590 (1091)
+.|++.++..+ ....++|.|.++.. ..|+||+.+|+|-++ .|+.|.+.+..+.++
T Consensus 59 -------~~~~i~vi~~~------n~G~~~arN~gl~~----a~g~yi~flD~DD~~-~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 59 -------NYPHVRLLHQA------NAGVSVARNTGLAV----ATGKYVAFPDADDVV-YPTMYETLMTMALED 113 (328)
T ss_pred -------hCCCEEEEECC------CCChHHHHHHHHHh----CCCCEEEEECCCCcc-ChhHHHHHHHHHHhC
Confidence 01345666432 23489999999985 699999999999995 799999999887654
No 60
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.45 E-value=3.9e-06 Score=92.15 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=49.8
Q ss_pred cEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccc
Q 001369 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRF 605 (1091)
Q Consensus 528 ~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F 605 (1091)
.+.|+.-++.-| .|||+|.+++.. .-.+++||+.+|.|-++ .+++|.+.+.++..+ +.+++.|. |..+
T Consensus 46 ~i~~i~~~~N~G-----~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~--~~~~~~~~-~~~~ 113 (281)
T TIGR01556 46 KIALIHLGDNQG-----IAGAQNQGLDAS-FRRGVQGVLLLDQDSRP-GNAFLAAQWKLLSAE--NGQACALG-PRFF 113 (281)
T ss_pred CeEEEECCCCcc-----hHHHHHHHHHHH-HHCCCCEEEEECCCCCC-CHHHHHHHHHHHHhc--CCceEEEC-CeEE
Confidence 567776655444 799999998853 12378999999999995 799999999887542 23688776 4433
No 61
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.45 E-value=1.5e-06 Score=87.92 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=50.6
Q ss_pred EEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccC
Q 001369 529 LVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDG 607 (1091)
Q Consensus 529 lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 607 (1091)
+.++..+++.| |++|+|.+++. +.+++|+.+|+|-. ..|++|.+.+-.+..+ +..+|+.+..+.+
T Consensus 56 ~~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~ 120 (185)
T cd04179 56 VRVIRLSRNFG-----KGAAVRAGFKA----ARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRG 120 (185)
T ss_pred eEEEEccCCCC-----ccHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCC
Confidence 45666666555 99999999985 57899999999998 4899999999986654 4667777765544
No 62
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.38 E-value=9.2e-06 Score=90.73 Aligned_cols=53 Identities=15% Similarity=0.333 Sum_probs=43.3
Q ss_pred CcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcC
Q 001369 527 PSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 589 (1091)
Q Consensus 527 P~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~D 589 (1091)
|++.|+..++..| ++.|+|.++.. .+|+||+.+|+|-+. .|+.|.+.+-++..
T Consensus 60 ~ri~~i~~~~n~G-----~~~a~N~gi~~----a~g~~I~~lDaDD~~-~p~~l~~~~~~~~~ 112 (279)
T PRK10018 60 PRITYIHNDINSG-----ACAVRNQAIML----AQGEYITGIDDDDEW-TPNRLSVFLAHKQQ 112 (279)
T ss_pred CCEEEEECCCCCC-----HHHHHHHHHHH----cCCCEEEEECCCCCC-CccHHHHHHHHHHh
Confidence 3678887665444 89999999985 689999999999995 79999998887643
No 63
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.30 E-value=2.3e-05 Score=85.78 Aligned_cols=46 Identities=15% Similarity=0.026 Sum_probs=35.1
Q ss_pred cceEEEEecCCCCCCCHHHHHHHHHHHHcCC-CCCCCcEEEEcCCCChhhh
Q 001369 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVD-YPVDKVACYVSDDGAAMLT 409 (1091)
Q Consensus 360 P~VDvfV~T~dP~kEPp~v~~nTvls~la~D-YP~~kl~~yvsDDG~s~lt 409 (1091)
|.|.|+||||| | ...+..|+-|++++. .+...+.++|.|||..+-|
T Consensus 1 ~~vSVIi~~yN---~-~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t 47 (248)
T PRK10063 1 MLLSVITVAFR---N-LEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGT 47 (248)
T ss_pred CeEEEEEEeCC---C-HHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccH
Confidence 56899999997 5 356899999998642 2334688999999988733
No 64
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.23 E-value=8.2e-06 Score=83.00 Aligned_cols=105 Identities=14% Similarity=0.207 Sum_probs=63.1
Q ss_pred cEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccC
Q 001369 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDG 607 (1091)
Q Consensus 528 ~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 607 (1091)
++.|+..++. ..|++|+|++++. +.+++|+.+|+|.. ..+++|.+.+.. +++ +.++.+...... +
T Consensus 56 ~i~~i~~~~n-----~G~~~a~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~-~~~--~~~~v~g~~~~~--~ 120 (181)
T cd04187 56 RVKVIRLSRN-----FGQQAALLAGLDH----ARGDAVITMDADLQ-DPPELIPEMLAK-WEE--GYDVVYGVRKNR--K 120 (181)
T ss_pred CEEEEEecCC-----CCcHHHHHHHHHh----cCCCEEEEEeCCCC-CCHHHHHHHHHH-HhC--CCcEEEEEecCC--c
Confidence 4566655543 3499999999985 57899999999999 589999999987 443 224544332221 1
Q ss_pred CCCccccccchhhhhhhhccccccCCCccccccCcchhhhhhc
Q 001369 608 IDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALY 650 (1091)
Q Consensus 608 id~~Dr~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALy 650 (1091)
.....++.+ ..++. ....+.+..-+...|+..++||+++-
T Consensus 121 ~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 ESWLKRLTS--KLFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred chHHHHHHH--HHHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 110111111 11111 11222334445566777899999985
No 65
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.19 E-value=3.1e-05 Score=73.36 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=41.4
Q ss_pred cccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHH-hhcCCCCCccEEEEecC
Q 001369 542 HHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMC-FMMDPQSGKKICYVQFP 602 (1091)
Q Consensus 542 hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amc-ff~Dp~~g~~va~VQ~P 602 (1091)
+..|++++|.++.. .++++++++|+|.+ ..|+++...+- +..++ +...|+.+
T Consensus 62 ~~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 62 NQGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CCChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 34599999999986 37999999999999 47889888744 45555 67778777
No 66
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.13 E-value=6.1e-05 Score=84.52 Aligned_cols=69 Identities=23% Similarity=0.299 Sum_probs=51.8
Q ss_pred CcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCC-EEEEecCCCCCChHHHHHHHHHhhc-CCCCCccEEEEecCcc
Q 001369 527 PSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAP-YLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYVQFPQR 604 (1091)
Q Consensus 527 P~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p-~Il~lDcDh~~~n~~~Lr~amcff~-Dp~~g~~va~VQ~PQ~ 604 (1091)
|.+.|+.-.+.-|+ ||+.|.+++.. +.++. |++.|+-|.+ .++++|.+.+-.+. +| .++.|+.-.+
T Consensus 56 ~~v~~i~~~~NlG~-----agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~~~~~~~i~ 123 (305)
T COG1216 56 PNVRLIENGENLGF-----AGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AAGVVGPLIR 123 (305)
T ss_pred CcEEEEEcCCCccc-----hhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CCeEeeeeEe
Confidence 45777776666675 89999888753 34544 9999999977 69999999998774 44 7888887766
Q ss_pred ccC
Q 001369 605 FDG 607 (1091)
Q Consensus 605 F~n 607 (1091)
.++
T Consensus 124 ~~~ 126 (305)
T COG1216 124 NYD 126 (305)
T ss_pred cCC
Confidence 543
No 67
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.11 E-value=1.2e-05 Score=99.95 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=45.5
Q ss_pred cccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhccch
Q 001369 788 SVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWALGSV 839 (1091)
Q Consensus 788 SITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~l 839 (1091)
+..||=.+..++..+||+.-|+..+.+ ...+|+++..++.||+||..|.+
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~s~a--~t~~Pe~~~efl~QrrRW~~s~f 598 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAASDA--ETEAPESFLEFLNQRRRWLNSIF 598 (862)
T ss_pred ccchhHHHHHHHHhccceeeeeccccc--cccCcHhHHHHHHHhhhhcccch
Confidence 589999999999999999999966555 89999999999999999999933
No 68
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.10 E-value=8.6e-05 Score=82.54 Aligned_cols=61 Identities=13% Similarity=0.222 Sum_probs=44.9
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEEecCccccCCCC
Q 001369 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDR 610 (1091)
Q Consensus 544 ~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~ 610 (1091)
.+|.|.|.++.. +++++|+.+|+|.+ +.|+++.+++-+.+.=. ....+++-.|..|.+.+.
T Consensus 75 ~~a~arN~g~~~----A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~-~~~~~~~~~p~~yl~~~~ 135 (281)
T PF10111_consen 75 SRAKARNIGAKY----ARGDYLIFLDADCI-PSPDFIEKLLNHVKKLD-KNPNAFLVYPCLYLSEEG 135 (281)
T ss_pred CHHHHHHHHHHH----cCCCEEEEEcCCee-eCHHHHHHHHHHHHHHh-cCCCceEEEeeeeccchh
Confidence 699999999985 69999999999999 58999999999321100 113456666777665443
No 69
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.03 E-value=0.00011 Score=84.13 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=35.1
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcC
Q 001369 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 589 (1091)
Q Consensus 544 ~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~D 589 (1091)
.|++|+|++++. +.|++|+++|+|.. .+++.+.+.+-.+.+
T Consensus 149 G~~~A~~~Gi~~----a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 149 GKGGAVRIGMLA----SRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred ChHHHHHHHHHH----ccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 499999999985 57999999999998 588998888877653
No 70
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.88 E-value=7.3e-05 Score=84.58 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=42.4
Q ss_pred ccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCccEEEEec
Q 001369 543 HKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYVQF 601 (1091)
Q Consensus 543 h~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~-Dp~~g~~va~VQ~ 601 (1091)
..|++|+|.++.. +++++|+.+|+|....+|++|.+.+..+. || ++++|..
T Consensus 101 ~Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CCHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 3499999999885 68999999999986358999999998775 77 6777764
No 71
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.24 E-value=0.0029 Score=72.23 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=35.3
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhc
Q 001369 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM 588 (1091)
Q Consensus 544 ~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~ 588 (1091)
.|++|+|++++. +.|++++.+|||.. ..|+.+.+.+-.+.
T Consensus 77 G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 77 GQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 489999999985 68999999999999 68999999888774
No 72
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=96.89 E-value=0.011 Score=68.05 Aligned_cols=159 Identities=26% Similarity=0.413 Sum_probs=109.0
Q ss_pred cccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEE-ecCccccCCCCccccccchhh
Q 001369 542 HHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV-QFPQRFDGIDRHDRYSNRNVV 620 (1091)
Q Consensus 542 hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~V-Q~PQ~F~nid~~Dr~~n~~~v 620 (1091)
-+.|-.||=-+.|. ...|+|++.|.|-.. .|+.+....-=||.|+ +.|+| |+|-.++-.-
T Consensus 155 ~npKInN~mpgy~~----a~ydlvlisDsgI~m-~pdtildm~t~M~she---kmalvtq~py~~dr~G----------- 215 (431)
T KOG2547|consen 155 LNPKINNMMPGYRA----AKYDLVLISDSGIFM-KPDTILDMATTMMSHE---KMALVTQTPYCKDRQG----------- 215 (431)
T ss_pred cChhhhccCHHHHH----hcCCEEEEecCCeee-cCchHHHHHHhhhccc---ceeeecCCceeecccc-----------
Confidence 45687777777885 678999999999985 8999999888888775 89998 7786665221
Q ss_pred hhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCCCCCccccccCCcccccccCcchhhhhhchhhhh
Q 001369 621 FFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNCWPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEA 700 (1091)
Q Consensus 621 Ffdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1091)
|+.-. ..+|-||. +-|--|-| +|-.. .|.+
T Consensus 216 -f~atl-------e~~~fgTs--h~r~yl~~--------------n~~~~---~c~t----------------------- 245 (431)
T KOG2547|consen 216 -FDATL-------EQVYFGTS--HPRIYLSG--------------NVLGF---NCST----------------------- 245 (431)
T ss_pred -chhhh-------hheeeccC--CceEEEcc--------------ccccc---cccc-----------------------
Confidence 11111 11455553 22322211 11110 0111
Q ss_pred hhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhhcCCCCCchhhhhHHHHHHhhhcccccccccccc
Q 001369 701 SKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGK 780 (1091)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WGk 780 (1091)
|-|...++++++|.||+...
T Consensus 246 ----------------------------------gms~~mrK~~ld~~ggi~~f-------------------------- 265 (431)
T KOG2547|consen 246 ----------------------------------GMSSMMRKEALDECGGISAF-------------------------- 265 (431)
T ss_pred ----------------------------------cHHHHHHHHHHHHhccHHHH--------------------------
Confidence 45667788889999987531
Q ss_pred ccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHHHHHHHHHhc
Q 001369 781 EVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDRLHQVLRWAL 836 (1091)
Q Consensus 781 evGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~ 836 (1091)
| +.+.||+..+-.+..+||++.+..-+.. ...+-.+...+..|-.||..
T Consensus 266 --~---~yLaedyFaaksllSRG~ksaist~pal--QnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 266 --G---GYLAEDYFAAKSLLSRGWKSAISTHPAL--QNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred --H---HHHHHHHHHHHHHHhhhhhhhhcccchh--hhhhhhHHHHHHHHHHHhhh
Confidence 1 3899999999999999999999854332 56677888899999999975
No 73
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.83 E-value=0.00055 Score=76.72 Aligned_cols=48 Identities=33% Similarity=1.022 Sum_probs=43.9
Q ss_pred cccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhh
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Y 88 (1091)
.|..|=+.+.++ ..-|.+| -|||.|||.||.--|.+=|+.||-|...|
T Consensus 16 ~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 599999997776 4469999 99999999999999999999999999999
No 74
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.64 E-value=0.017 Score=55.50 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=38.2
Q ss_pred CcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChh
Q 001369 359 LAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 407 (1091)
Q Consensus 359 lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 407 (1091)
.|.|.|+|||+| |+ .....+|-|++...|+. ..+.|.|||.+.
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d 44 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTD 44 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCC
Confidence 577999999998 54 89999999999999996 459999999987
No 75
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.48 E-value=0.02 Score=61.48 Aligned_cols=41 Identities=12% Similarity=0.274 Sum_probs=35.3
Q ss_pred chhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCC
Q 001369 545 KAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDP 590 (1091)
Q Consensus 545 KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp 590 (1091)
.+.+.|.++.. ..+++|+.+|+|..+ .++.+.+...++.++
T Consensus 59 ~~~~~n~~~~~----a~~d~vl~lDaD~~~-~~~~~~~l~~~~~~~ 99 (229)
T cd02511 59 FGAQRNFALEL----ATNDWVLSLDADERL-TPELADEILALLATD 99 (229)
T ss_pred hHHHHHHHHHh----CCCCEEEEEeCCcCc-CHHHHHHHHHHHhCC
Confidence 78999999884 578999999999995 899999999888654
No 76
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.29 E-value=0.018 Score=65.41 Aligned_cols=59 Identities=20% Similarity=0.476 Sum_probs=51.3
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccccCCC
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSP 95 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~kg~p 95 (1091)
..+.|.+|-.+..++.+=.++|. +||-..|+.|.+--.+.|.+.||+|++..++.+=.|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 35799999999999988888888 999999999998877889999999999998864333
No 77
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.54 E-value=0.021 Score=49.23 Aligned_cols=45 Identities=33% Similarity=0.925 Sum_probs=36.4
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCC--Chhhh
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQ--CKTRY 88 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPq--Ckt~Y 88 (1091)
+..|.+||+.+- +|++.|.|.+|+=|.=|+||+++ +.|-- |++.+
T Consensus 5 ~~~C~~Cg~~~~---~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFK---DGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCccc---CCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 568999999974 47889999999999999999764 45555 66665
No 78
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=93.99 E-value=0.64 Score=53.94 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=34.2
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChh
Q 001369 363 DIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 407 (1091)
Q Consensus 363 DvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 407 (1091)
-|+|.||| -|.-+..|+-|+++..+-.+...+||++||...
T Consensus 3 PVlv~ayN----Rp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 3 PVLVIACN----RPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred CEEEEecC----CHHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 47788885 478999999999998744567889999999875
No 79
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=92.03 E-value=1.3 Score=56.40 Aligned_cols=100 Identities=26% Similarity=0.387 Sum_probs=64.6
Q ss_pred HhhcCCchHHhhhhhhhcCCCCCchhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEec
Q 001369 731 EKKFGQSPVFVDSSLLEDGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCI 810 (1091)
Q Consensus 731 ~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~ 810 (1091)
+-+||+-.+|-+--...-||++. |... -.++||+..|+....||-++.++
T Consensus 381 rlHYGHPD~~n~~f~~TRGGvSK----------Ask~-------------------lhLsEDIfaG~n~~lRGG~i~h~- 430 (817)
T PF02364_consen 381 RLHYGHPDVFNRIFMTTRGGVSK----------ASKG-------------------LHLSEDIFAGMNATLRGGRIKHC- 430 (817)
T ss_pred hccCCCchhhhhhheeccCccch----------Hhhc-------------------ccccHHHHHHHHHHhcCCceeeh-
Confidence 44678877776666677899864 2111 26899999999999999999998
Q ss_pred CCCccccccCC-CCHHHHHHHHHHHhccchhHhhhhccccccccCCCCCcccceee
Q 001369 811 PKRACFKGSAP-INLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSY 865 (1091)
Q Consensus 811 p~~aaf~G~aP-~tl~~~lkQR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRl~Y 865 (1091)
+-.+ .|..- -.+..-..=-..-+.|+=|..++|. .+-+..+|.+.+-+.+
T Consensus 431 ey~q--cGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe---~yrLg~~ld~~R~LSf 481 (817)
T PF02364_consen 431 EYIQ--CGKGRDVGFNSILNFETKIASGMGEQMLSRE---YYRLGTRLDFFRFLSF 481 (817)
T ss_pred hhhh--cccccccCchhhhhhHhHhcCCccchhhhHH---HHHhhccCCHHHHHHH
Confidence 4444 24332 1222333333566888888888763 1112567777655543
No 80
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.53 E-value=0.29 Score=49.50 Aligned_cols=52 Identities=33% Similarity=0.827 Sum_probs=39.0
Q ss_pred ccccccccccccCCCCCccccCCC-CCCCcchhhHHHHHh--hcCCCCCCChhhhcccc
Q 001369 37 QTCQICEDEIEITDNGEPFVACNE-CAFPVCRPCYEYERR--EGNQACPQCKTRYKRLK 92 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~e-C~FpvCrpCyeyerk--eG~~~CPqCkt~Ykr~k 92 (1091)
--|.||.|. ..-|-|.-=|| |||.||--||--=.| .-.-.||-|||-||..+
T Consensus 81 YeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 469999874 22344665555 599999999976666 55589999999998753
No 81
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=88.37 E-value=0.44 Score=37.24 Aligned_cols=44 Identities=34% Similarity=0.857 Sum_probs=32.8
Q ss_pred cccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhh
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~ 87 (1091)
.|.||.+.. .+.+ ....|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~-~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPV-VLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCce-EecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 2222 2234899999999976666678899999875
No 82
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=84.17 E-value=5.4 Score=43.05 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=36.7
Q ss_pred cEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcC
Q 001369 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 589 (1091)
Q Consensus 528 ~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~D 589 (1091)
.+.-..|.+.-|.. -|--+.+.. ..|+|+++.|||-- -.|+++-+.+-..-+
T Consensus 64 ~i~l~pR~~klGLg-----tAy~hgl~~----a~g~fiviMDaDls-HhPk~ipe~i~lq~~ 115 (238)
T KOG2978|consen 64 NILLKPRTKKLGLG-----TAYIHGLKH----ATGDFIVIMDADLS-HHPKFIPEFIRLQKE 115 (238)
T ss_pred cEEEEeccCcccch-----HHHHhhhhh----ccCCeEEEEeCccC-CCchhHHHHHHHhhc
Confidence 57778888854431 122234443 68999999999987 689999987766655
No 83
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=79.37 E-value=1.9 Score=37.13 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=34.1
Q ss_pred cccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhc
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
+|.||++-+ .+ +.+ ..||+-.||.|.+--.++ ++.||.|+.++.
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 699999863 22 333 378999999999877766 688999998773
No 84
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=74.60 E-value=1.2 Score=55.82 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=16.7
Q ss_pred chhhHHHHHhhcCCCCCCChhhhcc
Q 001369 66 CRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 66 CrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
|.-|- .+..+|..-||+|+++-..
T Consensus 30 Cp~CG-~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 30 CPQCG-TEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred CCCCC-CCCCcccccccccCCcccc
Confidence 44443 4467888999999988643
No 85
>PHA02929 N1R/p28-like protein; Provisional
Probab=74.01 E-value=3.5 Score=45.91 Aligned_cols=55 Identities=20% Similarity=0.581 Sum_probs=39.4
Q ss_pred cCCccccccccccccCC-CCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhc
Q 001369 34 LSGQTCQICEDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~-~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
.....|.||.+.+..++ ....|..=..|+=.-|+.|.. +-.+.++.||-|++++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 34679999999876443 112233334788999999995 45567899999998874
No 86
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.92 E-value=2.7 Score=46.23 Aligned_cols=45 Identities=36% Similarity=0.868 Sum_probs=37.0
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHH---HhhcCCCCCCChhhh
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE---RREGNQACPQCKTRY 88 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeye---rkeG~~~CPqCkt~Y 88 (1091)
---|.||=|.+ =|+.|-| ||---|.||. |- ....++.||=||..-
T Consensus 47 ~FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 47 FFDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred ceeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCcccccc
Confidence 34899997764 4578888 9999999998 76 568889999999765
No 87
>PHA02862 5L protein; Provisional
Probab=73.40 E-value=1.9 Score=44.36 Aligned_cols=50 Identities=28% Similarity=0.519 Sum_probs=32.4
Q ss_pred CccccccccccccCCCCCccccCCCC---CCCcchhhHHHH-HhhcCCCCCCChhhhccc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNEC---AFPVCRPCYEYE-RREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC---~FpvCrpCyeye-rkeG~~~CPqCkt~Ykr~ 91 (1091)
+.+|.||-++ ++|..-|| .| -==|=+.|.+-= ...++..|+|||++|.-.
T Consensus 2 ~diCWIC~~~-----~~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDV-----CDERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCc-----CCCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 4689999876 23446788 44 112335565322 347889999999999543
No 88
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=71.98 E-value=2.2 Score=35.57 Aligned_cols=26 Identities=35% Similarity=0.824 Sum_probs=21.2
Q ss_pred cccccccccccCCCCCccccCCCCCCCc
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFPV 65 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~Fpv 65 (1091)
+|.-||.++.++.. .-+-|.+||+.|
T Consensus 4 ~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 4 ICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred ECCCCCCEeecCCC--CceECCCCCceE
Confidence 79999999888743 338899999876
No 89
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=71.97 E-value=2.6 Score=34.25 Aligned_cols=43 Identities=35% Similarity=0.764 Sum_probs=33.2
Q ss_pred cccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCh
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCK 85 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCk 85 (1091)
.|.||-+++.. ++..+... |+=-.|+.|.+-=.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999755 67777774 9999999998554444 67999996
No 90
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=71.18 E-value=2.8 Score=32.80 Aligned_cols=26 Identities=27% Similarity=0.772 Sum_probs=18.9
Q ss_pred cccccccccccCCCCCccccCCCCCCCc
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFPV 65 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~Fpv 65 (1091)
+|.-||.+|.+... + -|-|.+||+.|
T Consensus 2 ~C~~Cg~~~~~~~~-~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKPG-D-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BSTS-S-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCCC-C-cEECCcCCCeE
Confidence 68899999996643 3 37999999875
No 91
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=70.26 E-value=1.8 Score=37.84 Aligned_cols=46 Identities=28% Similarity=0.644 Sum_probs=34.1
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
.|.|-.|+..-.+ ..+.+ ||=-||+-|+.-||-.| ||=|++|+...
T Consensus 7 ~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 4567777765222 13444 59999999999999888 99999999653
No 92
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=70.05 E-value=4 Score=44.08 Aligned_cols=53 Identities=28% Similarity=0.644 Sum_probs=36.1
Q ss_pred cccccCCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHh---------------hcCCCCCCChhhhc
Q 001369 30 SVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR---------------EGNQACPQCKTRYK 89 (1091)
Q Consensus 30 ~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerk---------------eG~~~CPqCkt~Yk 89 (1091)
-+...+.-.|.||-|.+- ++.+ -.|+--.|++|-+.-.. .+...||-|++...
T Consensus 12 ~~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred eccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 344445569999998752 3334 26899999999963211 13468999999884
No 93
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=69.76 E-value=3.6 Score=43.10 Aligned_cols=51 Identities=27% Similarity=0.513 Sum_probs=35.1
Q ss_pred CCccccccccccccCCCCCccccCCCCCC---CcchhhHHHHH-hhcCCCCCCChhhhccc
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAF---PVCRPCYEYER-REGNQACPQCKTRYKRL 91 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~F---pvCrpCyeyer-keG~~~CPqCkt~Ykr~ 91 (1091)
.+..|.||-++ +++..-+| .|.= -|=+.|-+-=. ..++..|++|+++|+-.
T Consensus 7 ~~~~CRIC~~~-----~~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDE-----YDVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCC-----CCCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 45699999766 23345688 5633 34567876543 35789999999999665
No 94
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=67.43 E-value=3.9 Score=47.21 Aligned_cols=52 Identities=29% Similarity=0.833 Sum_probs=43.2
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
...|.+|++.. +.+--.|+|| -|+|-+|-+|- --.-+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~-~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCH-KTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhh-hcccccCCCCCccCCccccC
Confidence 46899999985 4455679999 99999999998 34568999999999999764
No 95
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=65.24 E-value=3.8 Score=46.70 Aligned_cols=44 Identities=32% Similarity=0.915 Sum_probs=37.1
Q ss_pred CCCCCccccCCCCCCCc--------ch--hhHHHHHhhcCCCCCCChhhhcccc
Q 001369 49 TDNGEPFVACNECAFPV--------CR--PCYEYERREGNQACPQCKTRYKRLK 92 (1091)
Q Consensus 49 ~~~G~~fvaC~eC~Fpv--------Cr--pCyeyerkeG~~~CPqCkt~Ykr~k 92 (1091)
..+|+..--|..|+||| |+ .|||-+|.|-.+.||.|-.|-.|..
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIE 137 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHH
Confidence 44666677799999998 54 6999999999999999999998874
No 96
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=64.25 E-value=5 Score=45.57 Aligned_cols=53 Identities=23% Similarity=0.586 Sum_probs=43.7
Q ss_pred ccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
+.|.+|--++-++.+ ++.-=|+|+.+.|..|..---.-|...||.|.+.-+..
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358888888888765 55556699999999999777778999999999988664
No 97
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=64.04 E-value=6.3 Score=29.42 Aligned_cols=39 Identities=38% Similarity=0.949 Sum_probs=27.2
Q ss_pred ccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCC
Q 001369 39 CQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (1091)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqC 84 (1091)
|.||.+. .... +. -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~-----~~~~-~~-~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE-----LKDP-VV-LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC-----CCCc-EE-ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 6788777 1122 11 25788899999976666677889987
No 98
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=63.18 E-value=50 Score=38.00 Aligned_cols=60 Identities=22% Similarity=0.227 Sum_probs=37.0
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCC---CCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcC
Q 001369 361 KVDIFVSTVDPMKEPPLITANTVLSILAVDYPV---DKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFN 431 (1091)
Q Consensus 361 ~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~---~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~ 431 (1091)
..-|+||.||=.+-=+.+.-.|+-+ |.-.|-. =...+.|+|||...-|.+. | +-||+|++
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~-le~ry~~~~~F~~eiiVvddgs~d~T~~~-------a---~k~s~K~~ 130 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDY-LEKRYLSDKSFTYEIIVVDDGSTDSTVEV-------A---LKFSRKLG 130 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHH-HHHHhccCCCCceeEEEeCCCCchhHHHH-------H---HHHHHHcC
Confidence 6789999998222224444455443 3334433 2667999999998855543 2 34677765
No 99
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=62.42 E-value=5.6 Score=45.48 Aligned_cols=63 Identities=29% Similarity=0.690 Sum_probs=45.5
Q ss_pred ccccCCccccc--cccccccCCCCCccccCCC-CCCCcchhhHH-----------------------HH-----------
Q 001369 31 VKELSGQTCQI--CEDEIEITDNGEPFVACNE-CAFPVCRPCYE-----------------------YE----------- 73 (1091)
Q Consensus 31 ~~~~~~~~C~i--Cgd~vg~~~~G~~fvaC~e-C~FpvCrpCye-----------------------ye----------- 73 (1091)
+.++.|-.|.- ||...-...| +--|.|.. |+|-.||.|.| +|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~a 388 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAA 388 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhh
Confidence 45667889986 9987655542 23588877 99999999998 33
Q ss_pred ----HhhcCCCCCCChhhhccccCC
Q 001369 74 ----RREGNQACPQCKTRYKRLKGS 94 (1091)
Q Consensus 74 ----rkeG~~~CPqCkt~Ykr~kg~ 94 (1091)
.|-.++-||.|.++-.|.-|+
T Consensus 389 s~~TIk~tTkpCPkChvptErnGGC 413 (446)
T KOG0006|consen 389 SKETIKKTTKPCPKCHVPTERNGGC 413 (446)
T ss_pred hhhhhhhccCCCCCccCccccCCce
Confidence 223456788888888776665
No 100
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=59.11 E-value=28 Score=37.95 Aligned_cols=49 Identities=27% Similarity=0.384 Sum_probs=38.9
Q ss_pred ccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCccEEEE
Q 001369 543 HKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGKKICYV 599 (1091)
Q Consensus 543 h~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff-~Dp~~g~~va~V 599 (1091)
.--|-+.|++++. +.++|++.+.=|-.+.+++++.+++-.| .|| ++|.|
T Consensus 40 ~s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~----~~G~i 89 (217)
T PF13712_consen 40 KSMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEEDP----NIGMI 89 (217)
T ss_dssp S-TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH-T----TEEEE
T ss_pred cCHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC----CccEE
Confidence 3368899999985 7999999999999999999999999988 898 66655
No 101
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=58.46 E-value=1.3 Score=39.82 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=21.8
Q ss_pred hhhHHHHHhhcCCCCCCChhhhccccC
Q 001369 67 RPCYEYERREGNQACPQCKTRYKRLKG 93 (1091)
Q Consensus 67 rpCyeyerkeG~~~CPqCkt~Ykr~kg 93 (1091)
+-|+|++..||.=.||.|+..|--.+|
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIRDG 68 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred hhhhcccccCCEEEcCCCCCEEeCCCC
Confidence 456777889999999999999965433
No 102
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=57.73 E-value=1.7e+02 Score=40.11 Aligned_cols=80 Identities=25% Similarity=0.334 Sum_probs=45.9
Q ss_pred cccchHHHHHHHhhcCcEEEEecCCCccc----cccCCCCHHHHHHHHHHHhccchhHhhhhccccccccCCCCCcccce
Q 001369 788 SVTEDILTGFKMHCHGWRSVYCIPKRACF----KGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERF 863 (1091)
Q Consensus 788 SITEDi~Tg~rLh~rGWrsvY~~p~~aaf----~G~aP~tl~~~lkQR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRl 863 (1091)
.+.||+..|+....||-++.+| +-.++- .|....+. =-..-+.|+=|-.+++. .|-++.++.|-.-+
T Consensus 1173 nlsEDIfAG~n~tlRgG~itH~-EYiQvGKGRDvGlnqI~~-----FeaKia~G~GEQ~LSRd---~YrLG~~ldffRmL 1243 (1679)
T KOG0916|consen 1173 NLSEDIFAGFNATLRGGNITHH-EYIQVGKGRDVGLNQISN-----FEAKIANGNGEQTLSRD---YYRLGTQLDFFRML 1243 (1679)
T ss_pred ccchHhhhhhhHHhhCCCcccc-eeeecccccccCcchhhh-----hhhhhcCCCcchhhhHH---HHHhcccccHHHHH
Confidence 5899999999999999888887 322211 22322211 11345788887777763 22235566665444
Q ss_pred e-eeecchhhhhHH
Q 001369 864 S-YINSVVYPWTSI 876 (1091)
Q Consensus 864 ~-Yl~~~ly~l~sl 876 (1091)
. |+.+.-+++.++
T Consensus 1244 Sfyftt~GF~~n~m 1257 (1679)
T KOG0916|consen 1244 SFYFTTVGFYFNNM 1257 (1679)
T ss_pred HHHhccccHHHHhH
Confidence 3 333333444443
No 103
>PRK00420 hypothetical protein; Validated
Probab=55.54 E-value=4.4 Score=40.24 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=22.6
Q ss_pred ccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 56 VACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 56 vaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
-.|..|++|.= +-++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 46888888863 237999999999998854
No 104
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=55.26 E-value=5.8 Score=39.34 Aligned_cols=47 Identities=26% Similarity=0.675 Sum_probs=33.6
Q ss_pred CCccccccccccccCC-CCCccccCCCCCCCcchhhHHHHHhhcCCCCCCC
Q 001369 35 SGQTCQICEDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~-~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqC 84 (1091)
+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++-=.|-=|
T Consensus 53 ~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred CCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 5679999999987763 35 88999999999999977444444455544
No 105
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=53.50 E-value=60 Score=35.21 Aligned_cols=80 Identities=15% Similarity=0.338 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHhhc-CCCCcchhHHHHHHHHHHHHH
Q 001369 990 LIPPTTLFIINVVGVVVGISDAINNGYDSWG--PLFGRLFFALWVIIHLYPFLKGLLG-KQDRMPTIILVWSILLASILT 1066 (1091)
Q Consensus 990 liP~~~LllLnlvaiv~Gi~r~i~~~~~~w~--~l~g~l~~~~Wvv~nl~PflkgL~g-R~~r~P~~v~~~s~~la~~f~ 1066 (1091)
++-=..|+++.+++++-|+.-+++...+..| .++...+..+++++..|-|+--..| +..|.++. ++++.++.-.
T Consensus 96 m~lDssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~---K~~lv~~~sm 172 (226)
T COG4858 96 MWLDSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTW---KYLLVAVLSM 172 (226)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchH---HHHHHHHHHH
Confidence 3344567888888999888877765443333 2444556777888888888777766 33577764 2333333334
Q ss_pred Hhheee
Q 001369 1067 LMWVRI 1072 (1091)
Q Consensus 1067 ~lwv~i 1072 (1091)
++|+.+
T Consensus 173 ~lWi~v 178 (226)
T COG4858 173 LLWIAV 178 (226)
T ss_pred HHHHHH
Confidence 455543
No 106
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=53.27 E-value=7.3 Score=33.46 Aligned_cols=28 Identities=21% Similarity=0.730 Sum_probs=17.9
Q ss_pred cccccccccccCCCCCccccCCCCCCCcchhhHH
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYE 71 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCye 71 (1091)
.|.|||+++|+... .-+ +=+| ||..|++
T Consensus 1 ~C~iCg~kigl~~~--~k~---~DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKI---KDGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc--eec---cCcc-chHHHHH
Confidence 59999999998642 111 1123 7788873
No 107
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=53.15 E-value=9.9 Score=30.17 Aligned_cols=39 Identities=38% Similarity=0.933 Sum_probs=27.3
Q ss_pred ccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCC
Q 001369 39 CQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (1091)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqC 84 (1091)
|.||-+...- +++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 6788665322 44433 78999999999776666 7999988
No 108
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=52.85 E-value=9.4 Score=30.26 Aligned_cols=40 Identities=30% Similarity=0.707 Sum_probs=29.7
Q ss_pred ccccccccccCCCCCccccCCCCCCCcchhhHHHHHh-hcCCCCCCC
Q 001369 39 CQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR-EGNQACPQC 84 (1091)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerk-eG~~~CPqC 84 (1091)
|.||.+...... -=.+|+=..|+.|.+--.+ .++..||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 678887643322 2346799999999987766 788899988
No 109
>PRK12495 hypothetical protein; Provisional
Probab=51.61 E-value=8 Score=42.46 Aligned_cols=29 Identities=31% Similarity=0.875 Sum_probs=21.9
Q ss_pred cccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 55 FVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 55 fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
-.-|.+|+.||= +..|...||-|.+.+-+
T Consensus 42 a~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 42 NAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred hhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 345667777764 45899999999999964
No 110
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=50.45 E-value=12 Score=45.04 Aligned_cols=30 Identities=20% Similarity=0.523 Sum_probs=22.4
Q ss_pred CccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 53 EPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 53 ~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
+.-++|++|+.-+ ..+...||+|++.-.|+
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~ 248 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVR 248 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCC
Confidence 3468899999864 23446899999988655
No 111
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.27 E-value=75 Score=37.98 Aligned_cols=47 Identities=17% Similarity=0.064 Sum_probs=36.0
Q ss_pred CCCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCC
Q 001369 355 KPSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDG 404 (1091)
Q Consensus 355 ~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG 404 (1091)
-|.+||++.|+|.-.| |--..++.||-|++.-.=|.=--.|.+.||=
T Consensus 150 Ype~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDf 196 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDF 196 (603)
T ss_pred CcccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccC
Confidence 4678999999999997 9999999999999875533222246666763
No 112
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=50.06 E-value=5.3 Score=45.66 Aligned_cols=36 Identities=33% Similarity=0.915 Sum_probs=26.8
Q ss_pred cccccccccccCCCCCccccCCCC-CCCcchhhHHHHHhhc
Q 001369 38 TCQICEDEIEITDNGEPFVACNEC-AFPVCRPCYEYERREG 77 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC-~FpvCrpCyeyerkeG 77 (1091)
-|.+|--++- .-.|+-|+|| +|-.|-||+---..-|
T Consensus 7 hCdvC~~d~T----~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDMT----DLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhhh----cceeeeeecccccceehhhhhcccccc
Confidence 5888876543 3479999999 9999999994333333
No 113
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=49.92 E-value=11 Score=31.12 Aligned_cols=37 Identities=24% Similarity=0.799 Sum_probs=28.0
Q ss_pred CccccccccccccCCCCCccccCCCC-CCCcchhhHHHHHhhc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNEC-AFPVCRPCYEYERREG 77 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC-~FpvCrpCyeyerkeG 77 (1091)
...|..|+..+ .|.-| -|.+| .|-+|..||..-+..+
T Consensus 4 ~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 4 SYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 45799999843 36666 79999 9999999997544443
No 114
>PRK04023 DNA polymerase II large subunit; Validated
Probab=48.68 E-value=11 Score=49.21 Aligned_cols=45 Identities=22% Similarity=0.575 Sum_probs=32.8
Q ss_pred cCCccccccccccccCCCCCccccCCCCCC-----CcchhhHHHHHhhc-CCCCCCChhhhc
Q 001369 34 LSGQTCQICEDEIEITDNGEPFVACNECAF-----PVCRPCYEYERREG-NQACPQCKTRYK 89 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~F-----pvCrpCyeyerkeG-~~~CPqCkt~Yk 89 (1091)
.....|.-||... ....|.+||= ..|..| ++.+ .-.||.|++.=+
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4566999999883 5578999984 368888 4433 367999997653
No 115
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=47.91 E-value=11 Score=33.38 Aligned_cols=33 Identities=30% Similarity=0.695 Sum_probs=25.0
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchh
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRP 68 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrp 68 (1091)
.+|+|..||..+..+.++..|+ |..|++-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~-C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFT-CPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceEE-cCCCCCEECcH
Confidence 5889999999988755565554 88899876554
No 116
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=47.87 E-value=11 Score=31.52 Aligned_cols=45 Identities=22% Similarity=0.611 Sum_probs=31.9
Q ss_pred cccccccccccCCCCCccccCCCCCCC-cchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~Fp-vCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
.|.||.+..-. -.+.+ |+=- +|..|++--++ .+..||-|+++.++
T Consensus 4 ~C~iC~~~~~~----~~~~p---CgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 4 ECPICFENPRD----VVLLP---CGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp B-TTTSSSBSS----EEEET---TCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCccCCccCCc----eEEeC---CCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 69999987321 23455 5777 99999966666 77999999998753
No 117
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.72 E-value=3.6 Score=47.73 Aligned_cols=46 Identities=30% Similarity=0.701 Sum_probs=38.2
Q ss_pred ccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhh
Q 001369 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Y 88 (1091)
-+|.||-+=+-.+-. =-||+-..|+.|.--..++||..||-|++.-
T Consensus 44 v~c~icl~llk~tmt------tkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 44 VICPICLSLLKKTMT------TKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred hccHHHHHHHHhhcc------cHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 389999887655422 2389999999999999999999999999876
No 118
>PHA02926 zinc finger-like protein; Provisional
Probab=46.68 E-value=21 Score=39.48 Aligned_cols=61 Identities=25% Similarity=0.578 Sum_probs=42.1
Q ss_pred cCCccccccccccccCC--CCCccccCCCCCCCcchhhHHHHHhh-----cCCCCCCChhhhccccCC
Q 001369 34 LSGQTCQICEDEIEITD--NGEPFVACNECAFPVCRPCYEYERRE-----GNQACPQCKTRYKRLKGS 94 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~--~G~~fvaC~eC~FpvCrpCyeyerke-----G~~~CPqCkt~Ykr~kg~ 94 (1091)
.....|.||=+.|-... +...|--=..|+-.-|..|..--|+. +...||.|+++++...=|
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 45579999999975432 22223333357888999999766653 246799999999876444
No 119
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=45.53 E-value=12 Score=44.61 Aligned_cols=30 Identities=20% Similarity=0.543 Sum_probs=21.2
Q ss_pred ccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 54 ~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
.-++|++|+..+ . ......||+|++.--|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999866 1 23346799999986443
No 120
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF11077 DUF2616: Protein of unknown function (DUF2616); InterPro: IPR020201 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf52; it is a family of uncharacterised viral proteins.
Probab=43.70 E-value=8.1 Score=41.10 Aligned_cols=35 Identities=31% Similarity=0.943 Sum_probs=25.9
Q ss_pred ccccccccccCCCCCccccCCCCCCCc-chh--------------hHHHHHhhcC
Q 001369 39 CQICEDEIEITDNGEPFVACNECAFPV-CRP--------------CYEYERREGN 78 (1091)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~Fpv-Crp--------------CyeyerkeG~ 78 (1091)
|+-|... .+.+.-..|+.|-||+ |-. || ||..+++
T Consensus 55 C~fC~~~----~~~~~~~~C~~CfFPl~c~~~~~eEla~Y~LLSVCy-~E~~~~~ 104 (173)
T PF11077_consen 55 CDFCYAV----NTETDRLFCKQCFFPLYCTNGIDEELATYCLLSVCY-WESNEDS 104 (173)
T ss_pred hhHHHhc----ccchhHHHHHhccccccccccchHHHHHHHHHHHHH-hhccccc
Confidence 9999876 2344578899999999 653 77 7766654
No 122
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=43.57 E-value=8.8 Score=45.11 Aligned_cols=69 Identities=23% Similarity=0.526 Sum_probs=45.0
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhh-HHHHHhhcCCCCCCChhhh---ccc--cCCCCcCCCCCcCCc
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPC-YEYERREGNQACPQCKTRY---KRL--KGSPRVEGDEEEDDI 106 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpC-yeyerkeG~~~CPqCkt~Y---kr~--kg~prv~gd~ee~~~ 106 (1091)
-+--|..||+.+|+...--.-.+|.. -.=--| |||--+.|.+.||-|+.-- ||. -|||-|+.+-++-++
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsH---IfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vesest~~~v 438 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSH---IFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESESTDRCV 438 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhH---HHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccccccccc
Confidence 35589999999999865444556621 111122 6777899999999998322 222 367888777555444
No 123
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=43.00 E-value=14 Score=30.60 Aligned_cols=27 Identities=30% Similarity=0.803 Sum_probs=17.4
Q ss_pred cccccccccccCCCCCccccCCCCCCCc
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFPV 65 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~Fpv 65 (1091)
.|+-||..+..+++.. -+-|..|+.++
T Consensus 5 ~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 6777888777766544 34566666554
No 124
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=42.26 E-value=7 Score=38.68 Aligned_cols=26 Identities=23% Similarity=0.626 Sum_probs=17.7
Q ss_pred ccCCCCCCCcchhhHHHHHhhcCCCCCCChhhh
Q 001369 56 VACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 56 vaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Y 88 (1091)
+-|+.|+ ++++..+-.-.||+|+.+=
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 71 AWCWDCS-------QVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEcccCC-------CEEecCCcCccCcCCCCCC
Confidence 5577776 4556655556799999753
No 125
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=40.09 E-value=5.5e+02 Score=30.41 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=14.1
Q ss_pred hccCcccccccccchhhh
Q 001369 923 QWGGVGIDDWWRNEQFWV 940 (1091)
Q Consensus 923 ~wsG~sl~~wWrneq~W~ 940 (1091)
+..|-+++.||....|+-
T Consensus 173 ~~NGS~Ik~WW~~HHy~s 190 (330)
T PF07851_consen 173 IVNGSRIKGWWVFHHYIS 190 (330)
T ss_pred ccCCCcchHHHHHHHHHH
Confidence 456788999999888863
No 126
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=39.45 E-value=16 Score=32.58 Aligned_cols=31 Identities=26% Similarity=0.734 Sum_probs=24.6
Q ss_pred cCCccccccccc---cccCCCCCccccCCCCCCC
Q 001369 34 LSGQTCQICEDE---IEITDNGEPFVACNECAFP 64 (1091)
Q Consensus 34 ~~~~~C~iCgd~---vg~~~~G~~fvaC~eC~Fp 64 (1091)
..|-+|.-|+.- +...+||...|-|-+|+|.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 356689999854 5557899999999999985
No 127
>PRK07220 DNA topoisomerase I; Validated
Probab=39.11 E-value=12 Score=48.02 Aligned_cols=48 Identities=17% Similarity=0.617 Sum_probs=32.4
Q ss_pred ccccccccccccC--CCCCccccCCCCCCCcchhhHHHHHh----hcCCCCCCChh
Q 001369 37 QTCQICEDEIEIT--DNGEPFVACNECAFPVCRPCYEYERR----EGNQACPQCKT 86 (1091)
Q Consensus 37 ~~C~iCgd~vg~~--~~G~~fvaC~eC~FpvCrpCyeyerk----eG~~~CPqCkt 86 (1091)
..|..||.++... ..|..|+.|. +||-|+--+-..++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999875442 3466799995 67888755533221 13578999985
No 128
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=38.07 E-value=9.9 Score=37.84 Aligned_cols=29 Identities=14% Similarity=0.621 Sum_probs=16.5
Q ss_pred ccCCCCCCCcchhhHHHHHhhcC-CCCCCChhhhccc
Q 001369 56 VACNECAFPVCRPCYEYERREGN-QACPQCKTRYKRL 91 (1091)
Q Consensus 56 vaC~eC~FpvCrpCyeyerkeG~-~~CPqCkt~Ykr~ 91 (1091)
.-|+.|+ ++++..+-. ..||+|+.+-.+.
T Consensus 72 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~i 101 (117)
T PRK00564 72 LECKDCS-------HVFKPNALDYGVCEKCHSKNVII 101 (117)
T ss_pred EEhhhCC-------CccccCCccCCcCcCCCCCceEE
Confidence 4466665 334443322 3599999875444
No 129
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=38.05 E-value=17 Score=36.85 Aligned_cols=49 Identities=29% Similarity=0.718 Sum_probs=36.2
Q ss_pred cCCcccccccccccc--CCCCCccccCCCCCCCcchhhHHH---HHhhcCCCCCCChh
Q 001369 34 LSGQTCQICEDEIEI--TDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKT 86 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~--~~~G~~fvaC~eC~FpvCrpCyey---erkeG~~~CPqCkt 86 (1091)
...+.|..||....+ ...| -|+.|. .||.|+- |+- +..+....||+|+.
T Consensus 15 ~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 15 KTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred ccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 357799999999555 4568 999994 6999996 221 12256689999997
No 130
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=38.03 E-value=18 Score=32.07 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=13.5
Q ss_pred hhcCCCCCCChhhhc------cccCCCCcCCCCCcCCcC
Q 001369 75 REGNQACPQCKTRYK------RLKGSPRVEGDEEEDDID 107 (1091)
Q Consensus 75 keG~~~CPqCkt~Yk------r~kg~prv~gd~ee~~~~ 107 (1091)
.+.|..-|=|-+|-| -..|+=||+|.+++++.+
T Consensus 15 ~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~~~~~~~ 53 (57)
T PF03884_consen 15 SPENPFRPFCSERCKLIDLGRWANEEYRIPGEPDDEDED 53 (57)
T ss_dssp SSSSS--SSSSHHHHHHHHS-SSSSS----SSS-SS-S-
T ss_pred cCCCCcCCcccHhhcccCHHHHhcCCcccCCCCCCcccc
Confidence 355555555555544 246777888886544443
No 131
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.89 E-value=25 Score=42.04 Aligned_cols=53 Identities=25% Similarity=0.646 Sum_probs=36.6
Q ss_pred ccccccCC-ccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhc
Q 001369 29 KSVKELSG-QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 29 ~~~~~~~~-~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
+.+..+.. ..|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred ccccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 33445444 49999987642 2333 368999999999755433 458999999874
No 132
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=37.79 E-value=22 Score=30.00 Aligned_cols=30 Identities=33% Similarity=1.036 Sum_probs=25.0
Q ss_pred cccccccccccCCCCCccccCCCC-CCCcchhhHH
Q 001369 38 TCQICEDEIEITDNGEPFVACNEC-AFPVCRPCYE 71 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC-~FpvCrpCye 71 (1091)
.|..|+.++. +...+.|.+| .|-+|-+||.
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhh
Confidence 5888987653 4488999999 9999999995
No 133
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=37.75 E-value=12 Score=33.05 Aligned_cols=12 Identities=42% Similarity=1.157 Sum_probs=7.0
Q ss_pred CCCCCChhhhcc
Q 001369 79 QACPQCKTRYKR 90 (1091)
Q Consensus 79 ~~CPqCkt~Ykr 90 (1091)
-+||+||+-|..
T Consensus 45 PVCP~Ck~iye~ 56 (58)
T PF11238_consen 45 PVCPECKEIYES 56 (58)
T ss_pred CCCcCHHHHHHh
Confidence 345666666654
No 134
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=37.71 E-value=22 Score=29.53 Aligned_cols=29 Identities=34% Similarity=0.886 Sum_probs=24.0
Q ss_pred cccccccccccCCCCCccccCCCCC-CCcchhhHH
Q 001369 38 TCQICEDEIEITDNGEPFVACNECA-FPVCRPCYE 71 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~-FpvCrpCye 71 (1091)
.|..|+..|. | ....|.+|. |-+|.+||.
T Consensus 2 ~C~~C~~~i~----g-~r~~C~~C~d~dLC~~Cf~ 31 (46)
T cd02249 2 SCDGCLKPIV----G-VRYHCLVCEDFDLCSSCYA 31 (46)
T ss_pred CCcCCCCCCc----C-CEEECCCCCCCcCHHHHHC
Confidence 5889998532 5 788999997 999999995
No 135
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=37.46 E-value=12 Score=43.24 Aligned_cols=30 Identities=27% Similarity=0.868 Sum_probs=25.0
Q ss_pred CCCcchhhHHHHHhhcC--CCCCCChhhhccc
Q 001369 62 AFPVCRPCYEYERREGN--QACPQCKTRYKRL 91 (1091)
Q Consensus 62 ~FpvCrpCyeyerkeG~--~~CPqCkt~Ykr~ 91 (1091)
+|.|||.|+---|-+-+ +-||-|.++||..
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~ 32 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEE 32 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchh
Confidence 57899999976666666 9999999999754
No 136
>COG4818 Predicted membrane protein [Function unknown]
Probab=37.39 E-value=2.9e+02 Score=27.15 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=44.3
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCccceEeCcCCCCCCcccceeecccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 001369 941 IGGASSHFFALFQGLLKVLAGVSTNFTVTSKGADDGEFSELYLFKWTSLLIPPTTLFIINVVGVVVGISDAINNGYDSWG 1020 (1091)
Q Consensus 941 I~~~sa~LfAv~~aLlkvL~g~~~~F~VTpK~~~~~~~~~ly~f~ws~LliP~~~LllLnlvaiv~Gi~r~i~~~~~~w~ 1020 (1091)
|.+...++++.+.+++-.|.-++.+|..=-.. +. .++.+.++++.++.+..-.+ |
T Consensus 5 iegaLCY~lgwitGllFlllEre~~FVrFHAm------------QS------~ltF~~l~~l~ill~~iP~I-------g 59 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLLERESKFVRFHAM------------QS------FLTFLGLWLLIILLAFIPYI-------G 59 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCcceeehhH------------HH------HHHHHHHHHHHHHHHHhhhh-------H
Confidence 34555777888889887776666666221100 11 12222233333333222111 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchh
Q 001369 1021 PLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTI 1053 (1091)
Q Consensus 1021 ~l~g~l~~~~Wvv~nl~PflkgL~gR~~r~P~~ 1053 (1091)
-++..++.++=.+.-+.+++||--|-+.|.|.+
T Consensus 60 ~lls~~v~l~a~iLwlv~mykAyrGe~fKlPv~ 92 (105)
T COG4818 60 WLLSGLVGLAAFILWLVCMYKAYRGERFKLPVV 92 (105)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCCeecCcee
Confidence 122233333333334467889988888888863
No 137
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=36.89 E-value=13 Score=44.31 Aligned_cols=58 Identities=24% Similarity=0.619 Sum_probs=37.3
Q ss_pred CccccccccccccCCCCCccccCCCCC-CCcchhhHHHHHhhcCCCCCCChhhhccccC--CCCcCCC
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECA-FPVCRPCYEYERREGNQACPQCKTRYKRLKG--SPRVEGD 100 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~-FpvCrpCyeyerkeG~~~CPqCkt~Ykr~kg--~prv~gd 100 (1091)
...|-.|..+|. |-.+|-|.||. |-+|-+|+---..-|.+ ||.-+|+-.+. .|.+.+|
T Consensus 14 ky~C~~C~~dit----~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~~~s~~i~~~~ 74 (438)
T KOG0457|consen 14 KYNCDYCSLDIT----GLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMDTNSFPILDPS 74 (438)
T ss_pred CCCCccHhHHhc----cceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeecCCCCCCCCCC
Confidence 348999998764 66899999998 99999999322222222 34455555443 3444444
No 138
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=36.14 E-value=4.7 Score=39.77 Aligned_cols=13 Identities=23% Similarity=0.739 Sum_probs=8.2
Q ss_pred CCCCCChhhhccc
Q 001369 79 QACPQCKTRYKRL 91 (1091)
Q Consensus 79 ~~CPqCkt~Ykr~ 91 (1091)
-.||+|+.+..+.
T Consensus 87 ~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 87 FSCPRCGSPDVEI 99 (113)
T ss_dssp HH-SSSSSS-EEE
T ss_pred CCCcCCcCCCcEE
Confidence 4499999987554
No 139
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.10 E-value=34 Score=30.28 Aligned_cols=47 Identities=30% Similarity=0.803 Sum_probs=34.3
Q ss_pred cccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
.|..|+.++--+. .+-++-=.||-| |.+|-|-.. ++.||-|+--+-+
T Consensus 7 nCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 6999999965543 244555578987 999996554 4799999876643
No 140
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=34.56 E-value=21 Score=44.72 Aligned_cols=44 Identities=27% Similarity=0.536 Sum_probs=26.7
Q ss_pred ccCCccccccccccccCCCCCc-----------ccc-----CCCCCCCcchhhHHHHHhhc
Q 001369 33 ELSGQTCQICEDEIEITDNGEP-----------FVA-----CNECAFPVCRPCYEYERREG 77 (1091)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~G~~-----------fva-----C~eC~FpvCrpCyeyerkeG 77 (1091)
.....+|.|||.+-.+..+-.. |++ =.-=.||||..||.. ..+|
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~-l~~G 254 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALK-LEEG 254 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHH-HHHH
Confidence 3456689999999444444222 233 012378999999954 3445
No 141
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=34.53 E-value=24 Score=36.73 Aligned_cols=46 Identities=22% Similarity=0.499 Sum_probs=40.9
Q ss_pred ccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 45 EIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 45 ~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
-||+..+|-.=+-|.-|+|.-|..=.|-++..-+-.=|+|--+|--
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~iD 122 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYID 122 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhhh
Confidence 4788889999999999999999998888888888899999999943
No 142
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=34.23 E-value=20 Score=39.11 Aligned_cols=26 Identities=38% Similarity=0.879 Sum_probs=20.0
Q ss_pred CccccccccccccC----CCCCccccCCCCCCCcchhhHH
Q 001369 36 GQTCQICEDEIEIT----DNGEPFVACNECAFPVCRPCYE 71 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~----~~G~~fvaC~eC~FpvCrpCye 71 (1091)
..+|..||+-++-. .||+ |||++||+
T Consensus 172 ~v~C~kCGE~~~e~~~~~~ng~----------~vC~~C~~ 201 (206)
T COG2191 172 SVRCSKCGELFMEPRAVVLNGK----------PVCKPCAE 201 (206)
T ss_pred eeeccccCcccccchhhhcCCc----------eecccccc
Confidence 35999999987653 3676 78999995
No 143
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=33.74 E-value=33 Score=43.61 Aligned_cols=55 Identities=36% Similarity=0.899 Sum_probs=39.7
Q ss_pred cCCccccccccccccCCCCC---ccccCCCCC--------------------CCcchhhHH-HH----Hh--hcCCCCCC
Q 001369 34 LSGQTCQICEDEIEITDNGE---PFVACNECA--------------------FPVCRPCYE-YE----RR--EGNQACPQ 83 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~---~fvaC~eC~--------------------FpvCrpCye-ye----rk--eG~~~CPq 83 (1091)
..-.+|.-|=.++---.+=. +|..|..|| ||.|-.|-+ |+ |+ --.-|||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 45568999999875443322 699999994 999999974 33 43 22369999
Q ss_pred Chhhh
Q 001369 84 CKTRY 88 (1091)
Q Consensus 84 Ckt~Y 88 (1091)
|+-.|
T Consensus 179 CGP~~ 183 (750)
T COG0068 179 CGPHL 183 (750)
T ss_pred cCCCe
Confidence 99755
No 144
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=33.12 E-value=36 Score=27.83 Aligned_cols=43 Identities=23% Similarity=0.753 Sum_probs=31.1
Q ss_pred ccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChh
Q 001369 39 CQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKT 86 (1091)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt 86 (1091)
|.+|-.+. +++..+++ = .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l-~-~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRL-T-SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEE-c-ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88898887 33333332 2 679999999995544 67789999985
No 145
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=32.94 E-value=13 Score=36.94 Aligned_cols=29 Identities=24% Similarity=0.550 Sum_probs=16.9
Q ss_pred ccCCCCCCCcchhhHHHHHhhcC-CCCCCChhhhccc
Q 001369 56 VACNECAFPVCRPCYEYERREGN-QACPQCKTRYKRL 91 (1091)
Q Consensus 56 vaC~eC~FpvCrpCyeyerkeG~-~~CPqCkt~Ykr~ 91 (1091)
.-|+.|+ ++++..+-. -.||+|+.+=.+.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~i 100 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDMLRI 100 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCCcEE
Confidence 4476666 244444443 5699999764333
No 146
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=32.80 E-value=21 Score=27.05 Aligned_cols=28 Identities=32% Similarity=0.823 Sum_probs=12.0
Q ss_pred cccccccccccCCCCCccccCCCCCCCcchhh
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPC 69 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpC 69 (1091)
.|.+|+..+.. +.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~~----~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG----GWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S------EEE-TTT-----HHH
T ss_pred cCCcCCCcCCC----CceEECccCCCccChhc
Confidence 58899987543 57889999999998877
No 147
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=31.63 E-value=22 Score=30.65 Aligned_cols=29 Identities=21% Similarity=0.526 Sum_probs=20.7
Q ss_pred CccccccccccccCCCCCccccCCCCCCCc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPV 65 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~Fpv 65 (1091)
.-.|..||.+|.++. ...-+.|..|++.|
T Consensus 6 ~Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 347999999995443 22348898899875
No 148
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=31.38 E-value=15 Score=36.38 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=12.9
Q ss_pred HHHHhhcCCCCCCChhhhccc
Q 001369 71 EYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 71 eyerkeG~~~CPqCkt~Ykr~ 91 (1091)
+++..+-...||+|+.+=.+.
T Consensus 79 ~~~~~~~~~~CP~Cgs~~~~i 99 (115)
T TIGR00100 79 EVSPEIDLYRCPKCHGIMLQV 99 (115)
T ss_pred EEecCCcCccCcCCcCCCcEE
Confidence 344444356799999765444
No 149
>PRK11827 hypothetical protein; Provisional
Probab=31.08 E-value=28 Score=31.14 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=18.0
Q ss_pred CcchhhHHHHHhhcCCCCCCChhhhccccCCC
Q 001369 64 PVCRPCYEYERREGNQACPQCKTRYKRLKGSP 95 (1091)
Q Consensus 64 pvCrpCyeyerkeG~~~CPqCkt~Ykr~kg~p 95 (1091)
|+|+-=.+|...+..-.|..|+-.|--..|=|
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIP 43 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIP 43 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCcc
Confidence 44444334433333467888888886665554
No 150
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=30.91 E-value=12 Score=32.25 Aligned_cols=7 Identities=43% Similarity=1.365 Sum_probs=3.4
Q ss_pred CCCCChh
Q 001369 80 ACPQCKT 86 (1091)
Q Consensus 80 ~CPqCkt 86 (1091)
.||.|+.
T Consensus 36 ~CP~C~a 42 (50)
T cd00730 36 VCPVCGA 42 (50)
T ss_pred CCCCCCC
Confidence 4555543
No 151
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.79 E-value=12 Score=29.05 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=10.0
Q ss_pred hcCCCCCCChhhhc
Q 001369 76 EGNQACPQCKTRYK 89 (1091)
Q Consensus 76 eG~~~CPqCkt~Yk 89 (1091)
+....||.|+.+-.
T Consensus 15 ~~~~~CP~Cg~~~~ 28 (33)
T cd00350 15 EAPWVCPVCGAPKD 28 (33)
T ss_pred cCCCcCcCCCCcHH
Confidence 36678999987643
No 152
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=30.75 E-value=41 Score=38.11 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=26.8
Q ss_pred hHhHhhhhhccCCCCCCCcceEEEEecCCCCCCCHHHHHHHH
Q 001369 342 YLDRLSLRYEKEGKPSQLAKVDIFVSTVDPMKEPPLITANTV 383 (1091)
Q Consensus 342 ~~drL~~r~e~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTv 383 (1091)
-+|.|++-++.=.....+|.|=|||+ +||+..++.++++-+
T Consensus 158 ELeKm~~~Vd~i~~~~~~~~~PlFIs-vDPeRD~~~~~~eY~ 198 (280)
T KOG2792|consen 158 ELEKMSAVVDEIEAKPGLPPVPLFIS-VDPERDSVEVVAEYV 198 (280)
T ss_pred HHHHHHHHHHHHhccCCCCccceEEE-eCcccCCHHHHHHHH
Confidence 35555554432223456777878885 699999998887643
No 153
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=30.64 E-value=1.7e+02 Score=36.05 Aligned_cols=79 Identities=23% Similarity=0.478 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHH--Hhh
Q 001369 992 PPTTLFIINVVGVVVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIILVWSILLASILT--LMW 1069 (1091)
Q Consensus 992 P~~~LllLnlvaiv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~PflkgL~gR~~r~P~~v~~~s~~la~~f~--~lw 1069 (1091)
|...+++++++++++++.+++.... +|. .+++=+...=..++ .+|-+ |.|++=. -++||...|. .+|
T Consensus 311 ~~~~~l~l~~~Cia~aV~W~v~R~e-~~A-wilqDvLGIalci~---vLk~v-----RLPnlK~-~tiLL~c~f~YDiF~ 379 (541)
T KOG2442|consen 311 MSYRLLFLSILCIAVAVVWAVFRNE-DWA-WILQDVLGIALCIT---VLKTV-----RLPNLKV-CTILLLCLFLYDIFF 379 (541)
T ss_pred hhHHHHHHHHhhhheeEEEEEeecC-chH-HHHHhhHhHHHHHH---HHHHh-----cCCchhH-HHHHHHHHHHHhhhe
Confidence 4456788888999888887765432 343 33332222222222 23333 7887532 2455554454 499
Q ss_pred eeecCCCCCCCC
Q 001369 1070 VRINPFVSKDGP 1081 (1091)
Q Consensus 1070 v~i~~~~~~~~~ 1081 (1091)
|-|.||.+|+|.
T Consensus 380 VFitp~~t~~ge 391 (541)
T KOG2442|consen 380 VFITPFITKNGE 391 (541)
T ss_pred eeeehhhccCCc
Confidence 999999999654
No 154
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=29.98 E-value=1.9e+02 Score=34.49 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=29.1
Q ss_pred cccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHH
Q 001369 542 HHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMC 585 (1091)
Q Consensus 542 hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amc 585 (1091)
.+.|+-.|=-.+-... +.+.+||-.+|||.|+ |-++.|-+-
T Consensus 142 R~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyi--PGaV~EYvk 182 (393)
T PRK14503 142 RSGKGEGMIIGLLLAK-ALGARYVGFVDADNYI--PGAVNEYVK 182 (393)
T ss_pred ecCcchHHHHHHHHHH-HhCCCeEeEeecccCC--CchHHHHHH
Confidence 3458888875443322 3589999999999998 567777554
No 155
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=29.94 E-value=54 Score=29.34 Aligned_cols=49 Identities=24% Similarity=0.540 Sum_probs=36.1
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcC-CCCCCChh
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCKT 86 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~-~~CPqCkt 86 (1091)
...|..||-.|.-.+.+ .-.+|.+||=-+-+=|+ .-||-+| -.||.|+-
T Consensus 7 ~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 7 PPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred CccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 45899999998666555 44579999977455566 6678777 57999973
No 156
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=29.67 E-value=20 Score=38.10 Aligned_cols=34 Identities=35% Similarity=0.856 Sum_probs=22.0
Q ss_pred cccccccccccc----CCCCC-ccccCCCCCCCcchhhH
Q 001369 37 QTCQICEDEIEI----TDNGE-PFVACNECAFPVCRPCY 70 (1091)
Q Consensus 37 ~~C~iCgd~vg~----~~~G~-~fvaC~eC~FpvCrpCy 70 (1091)
.+|..||.+--. ..+|+ ..|--+|=-.|+||.||
T Consensus 138 avC~~Cg~~A~~t~R~~~~~~~i~iGg~e~Y~~~Cr~cy 176 (176)
T PF00265_consen 138 AVCEVCGRKATFTQRIVDDGEQILIGGSEKYEPVCRKCY 176 (176)
T ss_dssp EE-TTTSSEE-EEEEEETTSSSS-TTSTTTEEEE-CTTH
T ss_pred cEECCCCCceeEEEEEcCCCCEEEECCCCeEEEechhhC
Confidence 589999988332 24454 35666788899999998
No 157
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=29.59 E-value=44 Score=29.93 Aligned_cols=48 Identities=29% Similarity=0.630 Sum_probs=34.4
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcC-CCCCCCh
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCK 85 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~-~~CPqCk 85 (1091)
..+|-.||-.|-..+.+-.| +|..||=-+-.-|- --||-|| -.||-|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 34899999999888877665 69999943333333 3367777 5799886
No 158
>PRK07219 DNA topoisomerase I; Validated
Probab=29.27 E-value=24 Score=45.88 Aligned_cols=53 Identities=26% Similarity=0.698 Sum_probs=30.9
Q ss_pred CccccccccccccC--CCCCccccCCCCCCCcchhhHHHHH----hhcCCCCCCChhhhccc
Q 001369 36 GQTCQICEDEIEIT--DNGEPFVACNECAFPVCRPCYEYER----REGNQACPQCKTRYKRL 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~--~~G~~fvaC~eC~FpvCrpCyeyer----keG~~~CPqCkt~Ykr~ 91 (1091)
...|..||..+... ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 34677787664432 3455 88885 6777753322111 12347899998866543
No 159
>PRK11595 DNA utilization protein GntX; Provisional
Probab=29.24 E-value=31 Score=37.87 Aligned_cols=39 Identities=23% Similarity=0.652 Sum_probs=25.9
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhh
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~ 87 (1091)
...|.+||..+..++ ..+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 357999998864321 24788887654332 3589999865
No 160
>PRK14973 DNA topoisomerase I; Provisional
Probab=29.10 E-value=28 Score=45.94 Aligned_cols=48 Identities=21% Similarity=0.663 Sum_probs=31.6
Q ss_pred ccccccccccccC--CCCCccccCCCCCCCcchhhHHHHHh-hc-----CCCCCCChhh
Q 001369 37 QTCQICEDEIEIT--DNGEPFVACNECAFPVCRPCYEYERR-EG-----NQACPQCKTR 87 (1091)
Q Consensus 37 ~~C~iCgd~vg~~--~~G~~fvaC~eC~FpvCrpCyeyerk-eG-----~~~CPqCkt~ 87 (1091)
..|..||.++-.. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 4799999875432 3454 99996 66888855544222 12 3689999973
No 161
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=28.65 E-value=43 Score=38.79 Aligned_cols=44 Identities=23% Similarity=0.562 Sum_probs=29.7
Q ss_pred CCccccccccc--cc--c---CCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhh
Q 001369 35 SGQTCQICEDE--IE--I---TDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1091)
Q Consensus 35 ~~~~C~iCgd~--vg--~---~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~ 87 (1091)
+.+.|.+||.. ++ . +++|.-+.-|.-|+. |.+-.+-.||.|+..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~t---------eW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCAT---------EWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCC---------cccccCccCCCCCCC
Confidence 34599999988 11 1 258889999977764 333334677888764
No 162
>PRK04296 thymidine kinase; Provisional
Probab=27.34 E-value=27 Score=37.05 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=23.7
Q ss_pred cccccccccccc----C------CCCCc-cccCCCCCCCcchhhHH
Q 001369 37 QTCQICEDEIEI----T------DNGEP-FVACNECAFPVCRPCYE 71 (1091)
Q Consensus 37 ~~C~iCgd~vg~----~------~~G~~-fvaC~eC~FpvCrpCye 71 (1091)
.+|..||.+--. . .+|+. .+--.|=-.|+||.||.
T Consensus 141 ~vC~~Cg~~a~~~~r~~~~~~~~~~~~~~~ig~~e~Y~~~Cr~c~~ 186 (190)
T PRK04296 141 AICVHCGRKATMNQRLIDGGPAVYEGPQVLVGGNESYEAVCRKHYK 186 (190)
T ss_pred EEccccCCccceEEEEeCCCCccCCCCEEEECCcCcEEehhHHhhh
Confidence 489999987332 2 24444 35555667899999994
No 163
>PRK14873 primosome assembly protein PriA; Provisional
Probab=27.07 E-value=37 Score=43.24 Aligned_cols=9 Identities=33% Similarity=1.069 Sum_probs=4.6
Q ss_pred CCCCCChhh
Q 001369 79 QACPQCKTR 87 (1091)
Q Consensus 79 ~~CPqCkt~ 87 (1091)
..||.|+..
T Consensus 423 ~~Cp~Cgs~ 431 (665)
T PRK14873 423 WRCPRCGSD 431 (665)
T ss_pred ccCCCCcCC
Confidence 455555544
No 164
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=27.04 E-value=24 Score=31.34 Aligned_cols=28 Identities=25% Similarity=0.738 Sum_probs=20.4
Q ss_pred CccccccccccccCCCCCccccCCCCCCCc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPV 65 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~Fpv 65 (1091)
--+|.-||.+-.+. .|| .+-|.||||.|
T Consensus 20 iYiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred EEEecccccccccc-CCC-cEehhhcchHH
Confidence 34899999885554 344 47899999976
No 165
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=27.01 E-value=69 Score=37.11 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=27.4
Q ss_pred CCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEE
Q 001369 560 SNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV 599 (1091)
Q Consensus 560 tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~V 599 (1091)
...+||+++|.|++ |.+++-+....+..--....+.+||
T Consensus 126 a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~V 164 (317)
T PF13896_consen 126 ARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFV 164 (317)
T ss_pred cCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEE
Confidence 57899999999999 6777766666655322234467776
No 166
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=26.89 E-value=38 Score=28.07 Aligned_cols=45 Identities=22% Similarity=0.702 Sum_probs=31.1
Q ss_pred cccccccccccCCCCCccccCCCCCCCcchhhHHHHH-----hhcCCCCCCChh
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYER-----REGNQACPQCKT 86 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyer-----keG~~~CPqCkt 86 (1091)
+|++||. ..+++..|.|..|.--+=..|..... .++.=.||.|+.
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899998 56677899999998666666665432 233566776653
No 167
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.76 E-value=80 Score=39.67 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=40.5
Q ss_pred CCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChh
Q 001369 356 PSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 407 (1091)
Q Consensus 356 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 407 (1091)
...||++-|+|+-+| |...+...||-|++..-=|.=--.+.|.||....
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 456999999999998 9999999999998887655445568899998654
No 168
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=26.42 E-value=40 Score=29.56 Aligned_cols=12 Identities=42% Similarity=0.880 Sum_probs=9.9
Q ss_pred cccccccccccC
Q 001369 38 TCQICEDEIEIT 49 (1091)
Q Consensus 38 ~C~iCgd~vg~~ 49 (1091)
.|..||.+|.+.
T Consensus 4 ~CP~CG~~iev~ 15 (54)
T TIGR01206 4 ECPDCGAEIELE 15 (54)
T ss_pred CCCCCCCEEecC
Confidence 788899988775
No 169
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=25.76 E-value=38 Score=40.58 Aligned_cols=34 Identities=29% Similarity=0.689 Sum_probs=22.4
Q ss_pred ccccCCCCCCCcchhhHHHHHhhc-CCCCCCChhhhccc
Q 001369 54 PFVACNECAFPVCRPCYEYERREG-NQACPQCKTRYKRL 91 (1091)
Q Consensus 54 ~fvaC~eC~FpvCrpCyeyerkeG-~~~CPqCkt~Ykr~ 91 (1091)
..++|+||+--+=+| ..+.| .-.||+|++.-.|+
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~ 46 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVG 46 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCC
Confidence 367899998764332 11233 35799999998665
No 170
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=25.71 E-value=36 Score=31.36 Aligned_cols=30 Identities=33% Similarity=0.923 Sum_probs=23.7
Q ss_pred CCcccccccc--cccc-CCCCCccccCCCCCCC
Q 001369 35 SGQTCQICED--EIEI-TDNGEPFVACNECAFP 64 (1091)
Q Consensus 35 ~~~~C~iCgd--~vg~-~~~G~~fvaC~eC~Fp 64 (1091)
.|-+|.-|+. .|.+ .+||...+-|-+|+|.
T Consensus 7 AGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 7 AGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred cCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 4668999984 4444 6889999999999984
No 171
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.68 E-value=34 Score=38.93 Aligned_cols=22 Identities=27% Similarity=0.827 Sum_probs=17.1
Q ss_pred ccCCccccccccccccCCCCCccccCCCCC
Q 001369 33 ELSGQTCQICEDEIEITDNGEPFVACNECA 62 (1091)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~ 62 (1091)
..++..|.-||+- -|++|-.|+
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCC
Confidence 4566899999854 789998884
No 172
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.13 E-value=24 Score=31.65 Aligned_cols=17 Identities=47% Similarity=1.036 Sum_probs=14.3
Q ss_pred HhhcCCCCCCChhhhcc
Q 001369 74 RREGNQACPQCKTRYKR 90 (1091)
Q Consensus 74 rkeG~~~CPqCkt~Ykr 90 (1091)
-++|.-.||=|.|+||-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 36888999999999974
No 173
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=24.34 E-value=37 Score=35.12 Aligned_cols=45 Identities=31% Similarity=0.778 Sum_probs=31.8
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcch-hhHHHHHhhcCCCCCCChhhhcccc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCR-PCYEYERREGNQACPQCKTRYKRLK 92 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr-pCyeyerkeG~~~CPqCkt~Ykr~k 92 (1091)
.++|-||-..+- ---|.-|.||-|. +||.-- +.=|||+|+=+..+
T Consensus 5 t~tC~ic~e~~~-------KYKCpkC~vPYCSl~CfKiH-----k~tPq~~~ve~~~t 50 (157)
T KOG2857|consen 5 TTTCVICLESEI-------KYKCPKCSVPYCSLPCFKIH-----KSTPQCETVEDNNT 50 (157)
T ss_pred eeeehhhhcchh-------hccCCCCCCccccchhhhhc-----cCCccccccCCccc
Confidence 468888877532 2569999999996 899433 33689988765543
No 174
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.12 E-value=16 Score=26.49 Aligned_cols=13 Identities=31% Similarity=0.869 Sum_probs=6.1
Q ss_pred hhcCCCCCCChhh
Q 001369 75 REGNQACPQCKTR 87 (1091)
Q Consensus 75 keG~~~CPqCkt~ 87 (1091)
.++.+-||+|+++
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 3444445555543
No 175
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=24.06 E-value=40 Score=39.85 Aligned_cols=49 Identities=22% Similarity=0.521 Sum_probs=29.8
Q ss_pred cCCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHh------hc--CCCCCCChhhhccccCCCCcC
Q 001369 34 LSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR------EG--NQACPQCKTRYKRLKGSPRVE 98 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerk------eG--~~~CPqCkt~Ykr~kg~prv~ 98 (1091)
.+...|-.||..+-...+| +|..|| .|+. ++ --.|++|+..+ .|.+.++
T Consensus 4 ~~~~~C~~CGr~~~~~~~~------------lC~dC~-~~~~~~~~ip~~~~v~~C~~Cga~~---~~~~W~~ 60 (355)
T COG1499 4 ASTILCVRCGRSVDPLIDG------------LCGDCY-VETTPLIEIPDEVNVEVCRHCGAYR---IRGRWVD 60 (355)
T ss_pred CcccEeccCCCcCchhhcc------------ccHHHH-hccCccccCCCceEEEECCcCCCcc---CCCccee
Confidence 4556788888776533333 599999 5532 11 15799999443 3456665
No 176
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=23.99 E-value=17 Score=26.80 Aligned_cols=13 Identities=23% Similarity=0.813 Sum_probs=9.2
Q ss_pred hhcCCCCCCChhh
Q 001369 75 REGNQACPQCKTR 87 (1091)
Q Consensus 75 keG~~~CPqCkt~ 87 (1091)
.++..-||.|+++
T Consensus 13 ~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 13 DPDAKFCPNCGAK 25 (26)
T ss_pred CcccccChhhCCC
Confidence 6667777777765
No 177
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.90 E-value=20 Score=36.65 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=8.3
Q ss_pred cCCCCCCChhh
Q 001369 77 GNQACPQCKTR 87 (1091)
Q Consensus 77 G~~~CPqCkt~ 87 (1091)
..-.||+|+.+
T Consensus 106 ~~~~CP~Cgs~ 116 (135)
T PRK03824 106 AFLKCPKCGSR 116 (135)
T ss_pred cCcCCcCCCCC
Confidence 34569999976
No 178
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.88 E-value=32 Score=42.35 Aligned_cols=52 Identities=23% Similarity=0.596 Sum_probs=35.5
Q ss_pred cCCCCC-ccccCCCCCCC-cchhhH---HHHHhhcCCCCCCChhhhccccCCCCcCC
Q 001369 48 ITDNGE-PFVACNECAFP-VCRPCY---EYERREGNQACPQCKTRYKRLKGSPRVEG 99 (1091)
Q Consensus 48 ~~~~G~-~fvaC~eC~Fp-vCrpCy---eyerkeG~~~CPqCkt~Ykr~kg~prv~g 99 (1091)
++.+|- +++.|.+|+.. .|.-|= .|-++++.-.|..|+..++-..-||.=.+
T Consensus 205 lnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s 261 (505)
T TIGR00595 205 LNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGS 261 (505)
T ss_pred EeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCC
Confidence 455666 58888888876 477774 33355666778888888877777775443
No 179
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=23.69 E-value=37 Score=44.55 Aligned_cols=56 Identities=25% Similarity=0.562 Sum_probs=32.4
Q ss_pred CCccccccccc--ccc-CCCCCccccCCCCCCCcchhhHHHHH-----------hhcCCCCCCChhhhccccC
Q 001369 35 SGQTCQICEDE--IEI-TDNGEPFVACNECAFPVCRPCYEYER-----------REGNQACPQCKTRYKRLKG 93 (1091)
Q Consensus 35 ~~~~C~iCgd~--vg~-~~~G~~fvaC~eC~FpvCrpCyeyer-----------keG~~~CPqCkt~Ykr~kg 93 (1091)
....|..||.. +.. ...| .|++|. +||-|+-=...++ ......||.|+......+|
T Consensus 591 ~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~g 660 (860)
T PRK06319 591 TEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHG 660 (860)
T ss_pred cCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEecC
Confidence 45689999864 222 2345 699994 5777642111111 1225689999876655443
No 180
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=23.64 E-value=28 Score=27.01 Aligned_cols=24 Identities=38% Similarity=0.996 Sum_probs=11.7
Q ss_pred cccccccccccCCCCCccccCCCCCC
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAF 63 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~F 63 (1091)
.|..|+.+-.. +||..|| |.+|++
T Consensus 4 ~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp --TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCccee-ccCCEEe-CCcccc
Confidence 57788877555 6777766 878875
No 181
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.34 E-value=30 Score=33.61 Aligned_cols=43 Identities=33% Similarity=0.600 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccccccCCC-------CCCCCCCCCCCcchhhhhhcCCC
Q 001369 464 KREYEEFKIRINALVATAQKVPEEGWTMQDG-------TPWPGNNVRDHPGMIQVFLGQSG 517 (1091)
Q Consensus 464 kreYeE~k~rI~~l~~k~~~~p~~~w~m~dg-------~~w~g~~~rdhp~iiqv~l~~~g 517 (1091)
|.||+|+|.. .-.+|.|+|= +.|.-.+--.||.+.+.+--.+|
T Consensus 20 k~eyqel~~~-----------~~d~W~m~Dlk~k~~~~sd~tiknlL~hPrl~k~L~ieng 69 (107)
T COG4707 20 KVEYQELKEK-----------DFDGWVMMDLKEKKSNRSDWTIKNLLLHPRLKKMLSIENG 69 (107)
T ss_pred HHHHHHHHHh-----------hhcchhhhHHHHHhcccchhHHHHHhcCchhhhheeeecC
Confidence 4699998753 1358999874 34544445678888887765555
No 182
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=23.20 E-value=94 Score=26.40 Aligned_cols=45 Identities=33% Similarity=0.716 Sum_probs=28.6
Q ss_pred cccccccccccCCCCCccccCCCCCCC---cchhhHHHHHh-hcCCCCCCCh
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFP---VCRPCYEYERR-EGNQACPQCK 85 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~Fp---vCrpCyeyerk-eG~~~CPqCk 85 (1091)
+|.||-+ +-+++..++.+| .|.-. |=+.|.+.=.. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899987 334444457788 45432 44567755544 4467899996
No 183
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=22.93 E-value=59 Score=24.17 Aligned_cols=24 Identities=33% Similarity=0.946 Sum_probs=12.9
Q ss_pred ccccccccccCCCCCccccCCCCCC
Q 001369 39 CQICEDEIEITDNGEPFVACNECAF 63 (1091)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~F 63 (1091)
|..||-.|--.+.|-.| .|..|||
T Consensus 1 C~sC~~~i~~r~~~v~f-~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPF-PCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceE-eCCCCCC
Confidence 45566654443444444 4767765
No 184
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.92 E-value=32 Score=27.54 Aligned_cols=11 Identities=45% Similarity=1.404 Sum_probs=9.6
Q ss_pred CCCCChhhhcc
Q 001369 80 ACPQCKTRYKR 90 (1091)
Q Consensus 80 ~CPqCkt~Ykr 90 (1091)
.||.|++.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999965
No 185
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=22.78 E-value=8.1e+02 Score=28.22 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=28.8
Q ss_pred hhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHH
Q 001369 546 AGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMC 585 (1091)
Q Consensus 546 AGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amc 585 (1091)
|-|=|.|+- +++-....+|+-+|+|-+-..|+.+++.|.
T Consensus 128 AraRN~LL~-~aL~p~~swVlWlDaDIv~~P~~lI~dli~ 166 (269)
T PF03452_consen 128 ARARNFLLS-SALGPWHSWVLWLDADIVETPPTLIQDLIA 166 (269)
T ss_pred HHHHHHHHH-hhcCCcccEEEEEecCcccCChHHHHHHHh
Confidence 334466664 444458899999999999878888887765
No 186
>PTZ00293 thymidine kinase; Provisional
Probab=22.33 E-value=37 Score=37.36 Aligned_cols=35 Identities=17% Similarity=0.598 Sum_probs=22.3
Q ss_pred cccccccccccc----CCCCCc-cccCCCCCCCcchhhHH
Q 001369 37 QTCQICEDEIEI----TDNGEP-FVACNECAFPVCRPCYE 71 (1091)
Q Consensus 37 ~~C~iCgd~vg~----~~~G~~-fvaC~eC~FpvCrpCye 71 (1091)
.+|..||.+--. .++|+. .+-=+|=--|+||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 589999988432 234443 23333445789999995
No 187
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=22.16 E-value=54 Score=41.02 Aligned_cols=41 Identities=29% Similarity=0.672 Sum_probs=24.8
Q ss_pred CccccccccccccCC----------CCCcccc--CCCCCCCcchhhHHHHHhhc
Q 001369 36 GQTCQICEDEIEITD----------NGEPFVA--CNECAFPVCRPCYEYERREG 77 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~----------~G~~fva--C~eC~FpvCrpCyeyerkeG 77 (1091)
+.+|.|||.+--++. |=.-|++ =.-=.||||+.||. ....|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~-~l~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYK-DVIYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHH-HHHHH
Confidence 579999999733222 1112333 12237999999994 44566
No 188
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=22.16 E-value=50 Score=37.21 Aligned_cols=58 Identities=28% Similarity=0.548 Sum_probs=43.7
Q ss_pred CccccccccccccCCCCCccccCCCCC-CCc--chhhHHHHHh-hcCCCCCCChhhhccccCC
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECA-FPV--CRPCYEYERR-EGNQACPQCKTRYKRLKGS 94 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~-Fpv--CrpCyeyerk-eG~~~CPqCkt~Ykr~kg~ 94 (1091)
+..|.||.++......+.+-++| .|. -+. =|.|.+-..+ -|+-.|..|+..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC-~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~ 139 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPC-SCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTK 139 (323)
T ss_pred CCcEEEEecccccccccccccCc-cccCcHHHHHHHHHHhhhccccCeeeecccccceeccee
Confidence 45899999987665444778999 673 222 4889988876 5779999999999887544
No 189
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.15 E-value=47 Score=35.62 Aligned_cols=43 Identities=28% Similarity=0.709 Sum_probs=35.3
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCh
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCK 85 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCk 85 (1091)
....|.||-+..-.. ....|+--.|+.|-+.-.. +.-.||.|+
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 345899998885443 5667899999999988877 889999999
No 190
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=22.01 E-value=30 Score=35.94 Aligned_cols=43 Identities=33% Similarity=0.777 Sum_probs=25.3
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhhHHHH-HhhcCCCCCCChh
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKT 86 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeye-rkeG~~~CPqCkt 86 (1091)
.+..|..||+ .-||+|.+|.= -|+-=.+.. ...+-..||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4557888984 47999988841 122211110 1233478999986
No 191
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.78 E-value=34 Score=27.29 Aligned_cols=11 Identities=36% Similarity=1.310 Sum_probs=9.4
Q ss_pred CCCCChhhhcc
Q 001369 80 ACPQCKTRYKR 90 (1091)
Q Consensus 80 ~CPqCkt~Ykr 90 (1091)
.||+|+++|.-
T Consensus 4 ~Cp~C~~~y~i 14 (36)
T PF13717_consen 4 TCPNCQAKYEI 14 (36)
T ss_pred ECCCCCCEEeC
Confidence 59999999954
No 192
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=21.55 E-value=52 Score=32.54 Aligned_cols=35 Identities=26% Similarity=0.674 Sum_probs=25.7
Q ss_pred CCCCccccCCCCCCC--cchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 50 DNGEPFVACNECAFP--VCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 50 ~~G~~fvaC~eC~Fp--vCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
+-|-.-..|.+|+.- ++..| +|..||+|..++++.
T Consensus 37 ~~G~~~~~C~~Cg~~~~~~~SC-------k~R~CP~C~~~~~~~ 73 (111)
T PF14319_consen 37 ALGFHRYRCEDCGHEKIVYNSC-------KNRHCPSCQAKATEQ 73 (111)
T ss_pred cCCcceeecCCCCceEEecCcc-------cCcCCCCCCChHHHH
Confidence 346677888888753 55555 478999999999653
No 193
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.37 E-value=60 Score=34.93 Aligned_cols=45 Identities=24% Similarity=0.702 Sum_probs=35.5
Q ss_pred ccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhh
Q 001369 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~ 87 (1091)
-.|.||=|.+.-. +-|+= +||---|+.|-+..+|.+ ..||-|..+
T Consensus 132 ~~CPiCl~~~sek----~~vsT-kCGHvFC~~Cik~alk~~-~~CP~C~kk 176 (187)
T KOG0320|consen 132 YKCPICLDSVSEK----VPVST-KCGHVFCSQCIKDALKNT-NKCPTCRKK 176 (187)
T ss_pred cCCCceecchhhc----ccccc-ccchhHHHHHHHHHHHhC-CCCCCcccc
Confidence 5788887775433 22554 899999999999999999 789999863
No 194
>PRK08359 transcription factor; Validated
Probab=21.29 E-value=29 Score=37.22 Aligned_cols=31 Identities=39% Similarity=0.838 Sum_probs=20.1
Q ss_pred CccccccccccccC-----CCCCccccCCCCCCCcchhhH-HHHH
Q 001369 36 GQTCQICEDEIEIT-----DNGEPFVACNECAFPVCRPCY-EYER 74 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~-----~~G~~fvaC~eC~FpvCrpCy-eyer 74 (1091)
...|.|||.+|--. .+|-. .-||..|| .|-.
T Consensus 6 ~~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~G~ 42 (176)
T PRK08359 6 PRYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKYGR 42 (176)
T ss_pred cceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHhCC
Confidence 34599999997422 24443 45778888 6744
No 195
>PRK12438 hypothetical protein; Provisional
Probab=21.27 E-value=1.5e+03 Score=30.82 Aligned_cols=46 Identities=15% Similarity=0.392 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhh
Q 001369 1024 GRLFFALWVIIHLYPFLKGLLGKQDRMPTIILVWSILLASILTLMW 1069 (1091)
Q Consensus 1024 g~l~~~~Wvv~nl~PflkgL~gR~~r~P~~v~~~s~~la~~f~~lw 1069 (1091)
++.+.++-.++...-|+.+++.|+-|+|.+.+..-++.++++..+|
T Consensus 259 a~~iL~~ia~i~Av~f~~~i~~r~~rlp~i~~~llv~~~iv~g~i~ 304 (991)
T PRK12438 259 AKLILVAIAVLCAVAFFAAIFLRDLRIPAMAAALLVLSAILVGGLW 304 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666667777777888999887766555555554444
No 196
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=21.07 E-value=49 Score=27.90 Aligned_cols=33 Identities=18% Similarity=0.464 Sum_probs=24.6
Q ss_pred cccccccccccCCCCCccccCCCCC-CCcchhhHHHHHh
Q 001369 38 TCQICEDEIEITDNGEPFVACNECA-FPVCRPCYEYERR 75 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~-FpvCrpCyeyerk 75 (1091)
.|.+||-++.. +..-|-.++ +-+|.+||+-.|-
T Consensus 2 ~C~~Cg~D~t~-----vryh~~~~~~~dLC~~CF~~G~f 35 (45)
T cd02336 2 HCFTCGNDCTR-----VRYHNLKAKKYDLCPSCYQEGRF 35 (45)
T ss_pred cccCCCCccCc-----eEEEecCCCccccChHHHhCcCC
Confidence 69999999742 556666675 9999999965443
No 197
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=20.84 E-value=1.7e+03 Score=28.73 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHhHHHHhhcCccc
Q 001369 872 PWTSIPLIVYCTLPAFCLLTGKFIV 896 (1091)
Q Consensus 872 ~l~sl~~liylllP~l~Ll~G~~ii 896 (1091)
+-+++..+..+.+|.+|...|..-+
T Consensus 47 ~~~a~~~i~liaip~i~~~ig~~~f 71 (952)
T TIGR02921 47 IEFALALILLIAIPAICIGIGGTCF 71 (952)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhh
Confidence 4456777777888999987765433
No 198
>PF04641 Rtf2: Rtf2 RING-finger
Probab=20.22 E-value=67 Score=36.12 Aligned_cols=51 Identities=20% Similarity=0.466 Sum_probs=37.7
Q ss_pred cCCccccccccccccCCCCC-ccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 34 LSGQTCQICEDEIEITDNGE-PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~-~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
...-+|.|++... +|. -||+=--||=-+|..|.+-- + .+..||.|.++|..
T Consensus 111 ~~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCcccc
Confidence 3445999998776 444 58887788888888888443 4 44679999999964
Done!