Query 001369
Match_columns 1091
No_of_seqs 406 out of 1902
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 00:37:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 1.4E-49 4.7E-54 490.3 46.7 491 282-1044 65-571 (802)
2 1weo_A Cellulose synthase, cat 100.0 3E-45 1E-49 330.1 8.3 84 28-111 8-91 (93)
3 2z86_A Chondroitin synthase; G 99.4 5.8E-13 2E-17 158.9 15.9 128 356-608 89-217 (625)
4 1xhb_A Polypeptide N-acetylgal 99.4 7.4E-12 2.5E-16 144.6 18.1 116 356-590 25-143 (472)
5 2d7i_A Polypeptide N-acetylgal 99.3 9.1E-12 3.1E-16 148.4 15.8 114 357-589 109-223 (570)
6 1qg8_A Protein (spore coat pol 99.3 2E-12 6.8E-17 135.5 8.3 124 360-606 1-129 (255)
7 3bcv_A Putative glycosyltransf 99.3 1.8E-11 6.1E-16 126.9 13.2 110 358-590 3-112 (240)
8 2ffu_A Ppgalnact-2, polypeptid 99.3 1.6E-11 5.5E-16 143.3 13.6 113 356-590 62-174 (501)
9 2z86_A Chondroitin synthase; G 99.2 8.7E-11 3E-15 140.1 14.2 124 357-607 372-496 (625)
10 4fix_A UDP-galactofuranosyl tr 98.7 3.4E-08 1.2E-12 120.1 13.1 63 528-601 241-304 (657)
11 3l7i_A Teichoic acid biosynthe 98.7 1.4E-09 4.9E-14 132.8 0.0 117 360-601 2-118 (729)
12 3ckj_A Putative uncharacterize 98.7 5.3E-08 1.8E-12 107.9 11.8 52 544-603 118-170 (329)
13 2fy7_A Beta-1,4-galactosyltran 98.4 4.4E-07 1.5E-11 99.8 8.5 53 790-842 201-263 (287)
14 3f1y_A Mannosyl-3-phosphoglyce 97.8 8.1E-05 2.8E-09 85.1 12.1 50 544-601 166-216 (387)
15 2nxv_A ATP synthase subunits r 97.3 0.0019 6.6E-08 68.5 13.8 45 546-599 63-112 (249)
16 1e4u_A Transcriptional repress 96.6 0.0023 7.9E-08 57.4 5.6 52 36-90 11-62 (78)
17 1fo8_A Alpha-1,3-mannosyl-glyc 95.3 0.029 1E-06 63.3 8.2 44 359-407 1-44 (343)
18 2bo4_A Mannosylglycerate synth 93.5 0.41 1.4E-05 55.0 12.3 46 543-588 74-119 (397)
19 2zu9_A Mannosyl-3-phosphoglyce 90.6 1.2 4.1E-05 51.3 11.4 38 544-584 144-181 (394)
20 1vyx_A ORF K3, K3RING; zinc-bi 89.2 0.34 1.2E-05 41.2 4.2 50 35-89 5-58 (60)
21 2ea6_A Ring finger protein 4; 87.1 0.48 1.6E-05 39.8 3.8 54 35-90 14-68 (69)
22 2d8s_A Cellular modulator of i 87.0 0.64 2.2E-05 41.7 4.7 54 34-90 13-70 (80)
23 2ecy_A TNF receptor-associated 86.1 0.46 1.6E-05 40.1 3.1 48 36-90 15-62 (66)
24 3ng2_A RNF4, snurf, ring finge 86.0 0.32 1.1E-05 41.3 2.2 55 34-90 8-63 (71)
25 1g25_A CDK-activating kinase a 85.3 0.63 2.1E-05 39.1 3.6 53 36-90 3-55 (65)
26 2ect_A Ring finger protein 126 83.6 1.8 6.1E-05 37.5 5.9 53 34-91 13-65 (78)
27 2wvl_A Mannosyl-3-phosphoglyce 83.4 3.1 0.0001 47.5 9.1 41 359-408 52-92 (391)
28 1t1h_A Gspef-atpub14, armadill 83.1 0.56 1.9E-05 40.8 2.4 47 36-89 8-54 (78)
29 2xeu_A Ring finger protein 4; 82.8 0.37 1.3E-05 39.9 1.1 53 36-90 3-56 (64)
30 2ckl_B Ubiquitin ligase protei 82.6 0.68 2.3E-05 46.2 3.2 48 37-90 55-102 (165)
31 2csz_A Synaptotagmin-like prot 81.9 0.63 2.2E-05 41.8 2.3 61 10-74 1-61 (76)
32 1iym_A EL5; ring-H2 finger, ub 81.3 1.3 4.5E-05 35.7 3.8 49 36-88 5-53 (55)
33 2ecm_A Ring finger and CHY zin 80.1 1.5 5E-05 35.3 3.8 50 35-88 4-53 (55)
34 2ysl_A Tripartite motif-contai 80.1 0.94 3.2E-05 38.6 2.7 49 35-90 19-69 (73)
35 3fl2_A E3 ubiquitin-protein li 79.1 1.1 3.8E-05 42.6 3.2 47 37-90 53-99 (124)
36 1chc_A Equine herpes virus-1 r 78.6 1.9 6.5E-05 36.2 4.2 49 36-91 5-53 (68)
37 1v87_A Deltex protein 2; ring- 78.2 1.7 5.8E-05 40.4 4.1 59 35-93 24-97 (114)
38 2ct2_A Tripartite motif protei 76.3 2.1 7.3E-05 37.6 4.0 52 36-90 15-68 (88)
39 2f42_A STIP1 homology and U-bo 76.0 1.4 4.9E-05 45.4 3.1 47 36-89 106-152 (179)
40 2ecv_A Tripartite motif-contai 75.7 2.6 9E-05 36.5 4.4 48 36-90 19-71 (85)
41 2c2l_A CHIP, carboxy terminus 75.0 1.6 5.4E-05 46.3 3.3 48 35-89 207-254 (281)
42 2ecw_A Tripartite motif-contai 74.0 2.8 9.5E-05 36.3 4.1 48 36-90 19-71 (85)
43 2kiz_A E3 ubiquitin-protein li 74.0 2.9 0.0001 35.2 4.1 52 35-91 13-64 (69)
44 3lrq_A E3 ubiquitin-protein li 72.3 2.4 8.2E-05 38.9 3.4 48 36-89 22-69 (100)
45 2djb_A Polycomb group ring fin 68.2 5.2 0.00018 34.1 4.4 49 36-91 15-63 (72)
46 3vk6_A E3 ubiquitin-protein li 67.6 2.9 9.8E-05 39.4 2.8 48 38-91 3-50 (101)
47 2gvi_A Conserved hypothetical 67.4 1.4 4.7E-05 46.2 0.7 29 34-72 170-202 (204)
48 2ep4_A Ring finger protein 24; 67.0 4.5 0.00016 34.5 3.8 51 36-91 15-65 (74)
49 3hct_A TNF receptor-associated 67.0 3 0.0001 39.3 2.9 47 37-90 19-65 (118)
50 2y43_A E3 ubiquitin-protein li 66.2 3.6 0.00012 37.3 3.2 48 36-90 22-69 (99)
51 2kr4_A Ubiquitin conjugation f 66.0 3.2 0.00011 37.2 2.7 46 36-89 14-59 (85)
52 2d8t_A Dactylidin, ring finger 65.9 4.2 0.00015 34.6 3.4 49 34-90 13-61 (71)
53 1x4j_A Ring finger protein 38; 65.4 2.8 9.7E-05 36.1 2.2 52 35-91 22-73 (75)
54 2csy_A Zinc finger protein 183 64.7 6.3 0.00021 34.4 4.3 46 36-89 15-60 (81)
55 1z6u_A NP95-like ring finger p 64.4 3.9 0.00013 40.6 3.2 47 37-90 79-125 (150)
56 2yur_A Retinoblastoma-binding 63.8 7.5 0.00026 33.4 4.6 49 36-90 15-64 (74)
57 3l11_A E3 ubiquitin-protein li 63.2 1.6 5.4E-05 40.9 0.1 48 36-90 15-62 (115)
58 2kre_A Ubiquitin conjugation f 63.1 3.1 0.0001 38.7 2.1 46 36-89 29-74 (100)
59 2l0b_A E3 ubiquitin-protein li 62.6 3.6 0.00012 37.0 2.4 49 35-88 39-87 (91)
60 2zet_C Melanophilin; complex, 62.5 0.81 2.8E-05 46.1 -2.1 51 35-87 67-117 (153)
61 1jm7_A BRCA1, breast cancer ty 61.9 5.9 0.0002 36.4 3.8 48 36-90 21-70 (112)
62 1zbd_B Rabphilin-3A; G protein 61.2 3.2 0.00011 40.9 2.0 37 33-72 52-89 (134)
63 2ecl_A Ring-box protein 2; RNF 60.4 5.5 0.00019 35.1 3.2 55 35-90 14-76 (81)
64 2ysj_A Tripartite motif-contai 59.9 7.7 0.00026 32.0 3.8 42 36-84 20-63 (63)
65 2ecn_A Ring finger protein 141 59.7 4.5 0.00015 34.2 2.3 48 35-91 14-61 (70)
66 3vth_A Hydrogenase maturation 58.9 4.9 0.00017 49.9 3.4 58 34-91 109-196 (761)
67 3hcs_A TNF receptor-associated 58.7 4.7 0.00016 40.2 2.7 47 37-90 19-65 (170)
68 1rmd_A RAG1; V(D)J recombinati 58.6 6 0.00021 36.9 3.3 48 36-90 23-70 (116)
69 3ztg_A E3 ubiquitin-protein li 58.2 5.8 0.0002 35.3 2.9 48 36-89 13-61 (92)
70 4ap4_A E3 ubiquitin ligase RNF 57.6 3.6 0.00012 38.6 1.6 54 35-90 71-125 (133)
71 3d00_A Tungsten formylmethanof 57.3 4.6 0.00016 42.0 2.4 26 34-71 161-186 (191)
72 4ayc_A E3 ubiquitin-protein li 57.2 5 0.00017 38.8 2.6 45 38-90 55-99 (138)
73 2ckl_A Polycomb group ring fin 56.6 5.7 0.00019 36.6 2.7 48 36-90 15-62 (108)
74 3h0g_L DNA-directed RNA polyme 55.6 7 0.00024 33.9 2.8 30 34-65 19-48 (63)
75 1wgm_A Ubiquitin conjugation f 55.0 5.9 0.0002 36.6 2.5 46 36-89 22-68 (98)
76 2ct0_A Non-SMC element 1 homol 54.7 4.3 0.00015 36.1 1.4 47 37-89 16-63 (74)
77 1jm7_B BARD1, BRCA1-associated 52.1 5.7 0.0002 37.3 1.9 45 36-89 22-66 (117)
78 2egp_A Tripartite motif-contai 51.6 3.7 0.00013 35.4 0.5 48 36-90 12-65 (79)
79 4ap4_A E3 ubiquitin ligase RNF 48.5 5.4 0.00019 37.3 1.2 55 35-91 6-61 (133)
80 3nw0_A Non-structural maintena 47.7 9.2 0.00032 40.9 2.9 48 36-89 180-228 (238)
81 2ea5_A Cell growth regulator w 46.9 19 0.00065 30.9 4.2 45 34-90 13-58 (68)
82 2k16_A Transcription initiatio 45.8 7.5 0.00026 34.0 1.5 53 35-91 17-72 (75)
83 1bor_A Transcription factor PM 45.7 11 0.00036 30.9 2.4 45 36-91 6-50 (56)
84 3dpl_R Ring-box protein 1; ubi 45.0 13 0.00045 34.9 3.2 54 35-89 36-100 (106)
85 2y1n_A E3 ubiquitin-protein li 44.4 11 0.00038 43.3 3.0 48 37-91 333-380 (389)
86 2ecg_A Baculoviral IAP repeat- 43.7 14 0.00047 32.0 2.9 43 36-90 25-68 (75)
87 2ecj_A Tripartite motif-contai 42.9 32 0.0011 27.4 4.9 42 36-84 15-58 (58)
88 3ttc_A HYPF, transcriptional r 42.6 9.9 0.00034 46.4 2.4 54 35-88 16-99 (657)
89 4g9i_A Hydrogenase maturation 42.3 9.9 0.00034 47.3 2.4 58 34-91 104-191 (772)
90 2vje_A E3 ubiquitin-protein li 41.5 9.7 0.00033 32.2 1.5 47 35-89 7-56 (64)
91 3knv_A TNF receptor-associated 41.1 7.5 0.00026 38.1 0.9 46 36-88 31-76 (141)
92 1xwh_A Autoimmune regulator; P 40.8 6.2 0.00021 33.9 0.2 58 31-96 3-63 (66)
93 2vrw_B P95VAV, VAV1, proto-onc 40.1 12 0.0004 42.4 2.3 35 34-71 355-390 (406)
94 2kdx_A HYPA, hydrogenase/ureas 39.0 3.2 0.00011 39.7 -2.1 30 55-91 73-103 (119)
95 3ky9_A Proto-oncogene VAV; cal 38.0 14 0.00047 44.1 2.7 36 34-72 527-563 (587)
96 1twf_L ABC10-alpha, DNA-direct 37.8 14 0.00049 32.6 2.0 26 37-64 29-54 (70)
97 2ku3_A Bromodomain-containing 37.6 7.2 0.00025 34.3 0.1 57 29-87 9-66 (71)
98 2js4_A UPF0434 protein BB2007; 37.4 2 6.7E-05 38.0 -3.5 40 64-103 12-51 (70)
99 1m3v_A FLIN4, fusion of the LI 36.2 24 0.00081 33.4 3.5 23 64-88 56-79 (122)
100 2jny_A Uncharacterized BCR; st 35.7 3 0.0001 36.6 -2.6 32 72-103 22-53 (67)
101 2xjy_A Rhombotin-2; oncoprotei 35.5 18 0.00062 34.2 2.6 46 37-88 30-76 (131)
102 2l43_A N-teminal domain from h 35.5 8.9 0.0003 35.0 0.4 54 33-88 22-76 (88)
103 3a43_A HYPD, hydrogenase nicke 34.4 4.9 0.00017 39.7 -1.7 14 78-91 107-120 (139)
104 2co8_A NEDD9 interacting prote 34.2 22 0.00075 31.2 2.7 61 31-95 10-79 (82)
105 1wim_A KIAA0161 protein; ring 33.6 18 0.00063 32.4 2.2 49 36-88 5-62 (94)
106 1tot_A CREB-binding protein; z 33.1 14 0.00049 30.6 1.2 31 36-72 6-37 (52)
107 2gai_A DNA topoisomerase I; zi 31.5 9.3 0.00032 46.4 -0.3 45 38-87 574-621 (633)
108 2yu4_A E3 SUMO-protein ligase 31.0 28 0.00097 31.4 3.0 46 36-87 7-59 (94)
109 3v43_A Histone acetyltransfera 30.2 30 0.001 32.6 3.1 51 36-86 5-63 (112)
110 2hf1_A Tetraacyldisaccharide-1 28.8 2.4 8.1E-05 37.3 -4.4 40 64-103 12-51 (68)
111 2dj7_A Actin-binding LIM prote 28.4 27 0.00093 30.6 2.3 37 29-65 8-52 (80)
112 2vje_B MDM4 protein; proto-onc 27.7 23 0.00078 29.7 1.6 47 36-90 7-56 (63)
113 1x4u_A Zinc finger, FYVE domai 27.5 49 0.0017 29.6 3.8 36 31-69 9-44 (84)
114 2d8y_A Eplin protein; LIM doma 27.5 77 0.0026 28.1 5.2 34 29-62 8-49 (91)
115 3htk_C E3 SUMO-protein ligase 27.1 20 0.0007 39.1 1.5 51 34-90 179-232 (267)
116 1rut_X Flinc4, fusion protein 26.4 32 0.0011 34.8 2.8 23 64-88 56-79 (188)
117 4a0k_B E3 ubiquitin-protein li 26.3 16 0.00054 35.1 0.4 55 35-90 47-112 (117)
118 1m4f_A Hepcidin; strand-loop-s 26.2 3 0.0001 30.2 -3.4 23 62-86 3-25 (26)
119 2e72_A POGO transposable eleme 25.7 21 0.00072 29.4 0.9 15 77-91 11-25 (49)
120 2l5u_A Chromodomain-helicase-D 25.3 24 0.00082 29.8 1.3 46 34-86 9-57 (61)
121 2cup_A Skeletal muscle LIM-pro 24.8 29 0.00099 31.2 1.8 23 63-88 54-76 (101)
122 2gmg_A Hypothetical protein PF 24.7 17 0.00057 34.6 0.2 26 56-87 68-93 (105)
123 2orw_A Thymidine kinase; TMTK, 24.7 26 0.00087 35.4 1.6 35 37-71 138-178 (184)
124 2jtn_A LIM domain-binding prot 24.6 73 0.0025 32.0 5.0 52 34-88 58-129 (182)
125 1w4r_A Thymidine kinase; type 24.6 22 0.00075 37.1 1.1 35 37-71 152-191 (195)
126 4ic3_A E3 ubiquitin-protein li 24.3 22 0.00077 30.6 0.9 43 36-90 24-67 (74)
127 1dl6_A Transcription factor II 24.1 52 0.0018 27.7 3.1 24 38-63 13-38 (58)
128 2jr6_A UPF0434 protein NMA0874 24.0 4.4 0.00015 35.6 -3.6 32 72-103 20-51 (68)
129 2cor_A Pinch protein; LIM doma 23.8 49 0.0017 28.7 3.1 36 33-68 12-54 (79)
130 2xqn_T Testin, TESS; metal-bin 23.3 34 0.0011 32.1 2.0 42 38-88 32-73 (126)
131 2lri_C Autoimmune regulator; Z 22.5 35 0.0012 29.5 1.8 46 34-86 10-58 (66)
132 1x61_A Thyroid receptor intera 22.1 67 0.0023 26.9 3.5 10 63-72 54-63 (72)
133 3lqh_A Histone-lysine N-methyl 21.9 30 0.001 35.7 1.5 53 35-87 1-63 (183)
134 2pk7_A Uncharacterized protein 21.5 3.7 0.00012 36.2 -4.6 32 72-103 20-51 (69)
135 3t6p_A Baculoviral IAP repeat- 21.2 25 0.00084 39.7 0.7 43 36-90 295-338 (345)
136 1mm2_A MI2-beta; PHD, zinc fin 20.3 39 0.0013 28.5 1.6 46 35-87 8-56 (61)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=1.4e-49 Score=490.29 Aligned_cols=491 Identities=23% Similarity=0.357 Sum_probs=376.0
Q ss_pred hHH-HHHHHHHHHHHHHhhhcccccch-----hHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhHhHhhhhhccCCC
Q 001369 282 YRL-IIILRLVILGLFFHYRILHPVNN-----AYALWLTSVICEIWFGVSWILDQFPKWYPITRETYLDRLSLRYEKEGK 355 (1091)
Q Consensus 282 yR~-~i~~~l~~l~~yl~wRi~~~~~~-----a~~~Wl~~~~~E~~f~~~wiL~~~~kw~Pv~R~t~~drL~~r~e~~~~ 355 (1091)
.|+ ++++.+++.+.|++||++.+++. ++++|++++++|+++.+.|++..+..++|..|...++ ..
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~---------~~ 135 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRP---------LQ 135 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC---------CC
T ss_pred hHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC---------CC
Confidence 354 56666777899999999986652 3567888999999999999999999999998875432 23
Q ss_pred CCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001369 356 PSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPR 435 (1091)
Q Consensus 356 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR 435 (1091)
++++|.|+|+||||| |++.++.+|+.|++++|||.+++.|+|+|||.++-|.+.
T Consensus 136 ~~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~----------------------- 189 (802)
T 4hg6_A 136 PEELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS----------------------- 189 (802)
T ss_dssp TTTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-----------------------
T ss_pred ccCCCcEEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc-----------------------
Confidence 567999999999997 999999999999999999999999999999998854431
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001369 436 APEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 515 (1091)
Q Consensus 436 ~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~ 515 (1091)
.+|+.+++..+ .++ .++.++++
T Consensus 190 ----------------~d~~i~~~~~~---~~~----~l~~~~~~----------------------------------- 211 (802)
T 4hg6_A 190 ----------------PDPELAQKAQE---RRR----ELQQLCRE----------------------------------- 211 (802)
T ss_dssp ----------------SSHHHHHHHHH---HHH----HHHHHHHH-----------------------------------
T ss_pred ----------------CCHHHHHHHHh---hhH----HHHHHHHh-----------------------------------
Confidence 12233332221 111 22223211
Q ss_pred CCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCc
Q 001369 516 SGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGK 594 (1091)
Q Consensus 516 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff-~Dp~~g~ 594 (1091)
.++.|+.|++ +++.||||+|.+++. ++++||+++|||+++ .|++|++++.+| .||
T Consensus 212 -----------~~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~~-~pd~L~~lv~~~~~dp---- 267 (802)
T 4hg6_A 212 -----------LGVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADHVP-SRDFLARTVGYFVEDP---- 267 (802)
T ss_dssp -----------HTCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTEEE-CTTHHHHHHHHHHHSS----
T ss_pred -----------cCcEEEEecC----CCCcchHHHHHHHHh----cCCCEEEEECCCCCc-ChHHHHHHHHHHhcCC----
Confidence 1478899987 677899999999996 699999999999995 899999999988 588
Q ss_pred cEEEEecCccccCCCCc-------cccccchhhhhhhhccccccCCCccccccCcchhhhhhcCCCCCccCCCCCCCCCC
Q 001369 595 KICYVQFPQRFDGIDRH-------DRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKSPGKTCNC 667 (1091)
Q Consensus 595 ~va~VQ~PQ~F~nid~~-------Dr~~n~~~vFfdi~~~gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~ 667 (1091)
++++||+|+.+.|.++. .++.+++..||....++.+.+++++++|++++|||+++.
T Consensus 268 ~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~----------------- 330 (802)
T 4hg6_A 268 DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALD----------------- 330 (802)
T ss_dssp SCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHH-----------------
T ss_pred CeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHH-----------------
Confidence 89999999999987732 455677889999999999999999999999999998872
Q ss_pred CCCccccccCCcccccccCcchhhhhhchhhhhhhhhhhhhhhhhhhcccccCCCCchhhHHHHhhcCCchHHhhhhhhh
Q 001369 668 WPKWCCLCCGSRKNKKAKQPKKDKKKKSKNKEASKQIHALENIEEGVEETNAEKPSDMSRMKLEKKFGQSPVFVDSSLLE 747 (1091)
Q Consensus 668 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e 747 (1091)
+
T Consensus 331 -------------------------------------------------------------------------------~ 331 (802)
T 4hg6_A 331 -------------------------------------------------------------------------------E 331 (802)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 3
Q ss_pred cCCCCCchhhhhHHHHHHhhhccccccccccccccCcccccccchHHHHHHHhhcCcEEEEecCCCccccccCCCCHHHH
Q 001369 748 DGGVTGDLKRASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRACFKGSAPINLSDR 827 (1091)
Q Consensus 748 ~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WGkevGW~ygSITEDi~Tg~rLh~rGWrsvY~~p~~aaf~G~aP~tl~~~ 827 (1091)
+||+++ ++++||.+++++++++||+++|+++.. +++.+|+|+.++
T Consensus 332 vGgf~~---------------------------------~~~~ED~~l~~rl~~~G~ri~~~~~~~--~~~~~p~t~~~~ 376 (802)
T 4hg6_A 332 AGGFAG---------------------------------ETITEDAETALEIHSRGWKSLYIDRAM--IAGLQPETFASF 376 (802)
T ss_dssp HTTCCC---------------------------------SSSSHHHHHHHHHHTTTCCEEECCCCC--EEECCCCSHHHH
T ss_pred cCCcCC---------------------------------CCcchHHHHHHHHHHcCCeEEEecCCE--EEecCCCCHHHH
Confidence 566543 478899999999999999999996544 389999999999
Q ss_pred HHHHHHHhccchhHhhhhccccccccCCCCCcccceeeeecchhhhhHHHHHHHHHHhHHHHhhcCcccccchhHHHHHH
Q 001369 828 LHQVLRWALGSVEIFLSRHCPIWYGYGGGLKLLERFSYINSVVYPWTSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVF 907 (1091)
Q Consensus 828 lkQR~RWA~G~lQil~sk~~Pl~~g~~~~L~~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~vs~~~~l~f 907 (1091)
++||.||++|.+|+++. ++|++ .+++++.||+.|+...++++.+++.++++++|+++++++..++......++.++
T Consensus 377 ~~Qr~RW~~G~~q~l~~-~~pl~---~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~ 452 (802)
T 4hg6_A 377 IQQRGRWATGMMQMLLL-KNPLF---RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYM 452 (802)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTS---CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHH-hCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHH
Confidence 99999999999999985 57876 678999999999999999999999999999999999999888765433222222
Q ss_pred H-HHHHHHHHHHHHHhhccCcccccccccchhhhhhhhhHHHHHHHHHHHH-HhcCCccceEeCcCCCCCCcccceeecc
Q 001369 908 I-GLFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALFQGLLK-VLAGVSTNFTVTSKGADDGEFSELYLFK 985 (1091)
Q Consensus 908 i-~lfls~~l~~~Le~~wsG~sl~~wWrneq~W~I~~~sa~LfAv~~aLlk-vL~g~~~~F~VTpK~~~~~~~~~ly~f~ 985 (1091)
+ ++++.+.+...+ +.+.. ..|| ++.++.+.+ + .++.+++. .+++++.+|+||+|+...+.. +-
T Consensus 453 lp~~l~~~~~~~~~---~~~~r-~~~~-~~l~~~~~~----~-~~~~a~l~~l~~~~~~~f~VT~Kg~~~~~~-----~~ 517 (802)
T 4hg6_A 453 PGYLAVSFLVQNAL---FARQR-WPLV-SEVYEVAQA----P-YLARAIVTTLLRPRSARFAVTAKDETLSEN-----YI 517 (802)
T ss_dssp HHHHHHHHHHHHHH---HTTTS-CTTH-HHHHHHHHH----H-HHHHHHHHHHHSTTCCCCCCCCCCCCCSSC-----CB
T ss_pred HHHHHHHHHHHHHH---hcCcH-HHHH-HHHHHHHHH----H-HHHHHHHHHHhCCCCCcceECCCCcccccc-----ch
Confidence 2 222222222222 11111 1233 334433221 1 12344433 345688999999999764332 11
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 001369 986 WTSLLIPPTTLFIINVVGVVVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLL 1044 (1091)
Q Consensus 986 ws~LliP~~~LllLnlvaiv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~PflkgL~ 1044 (1091)
+ .++.|++++++++++++++|+++..... .+..+.+++++|+++|++.+.-++.
T Consensus 518 ~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~w~~~~l~~l~~~~~ 571 (802)
T 4hg6_A 518 S-PIYRPLLFTFLLCLSGVLATLVRWVAFP----GDRSVLLVVGGWAVLNVLLVGFALR 571 (802)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHhccC----CccchhhhhhHHHHHHHHHHHHHHH
Confidence 2 4788999999999999999999886543 2455678999999999999988884
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=100.00 E-value=3e-45 Score=330.10 Aligned_cols=84 Identities=69% Similarity=1.316 Sum_probs=81.6
Q ss_pred cccccccCCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccccCCCCcCCCCCcCCcC
Q 001369 28 IKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDID 107 (1091)
Q Consensus 28 ~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~kg~prv~gd~ee~~~~ 107 (1091)
+|||+++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|||||+|+|
T Consensus 8 ~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~e~d~d 87 (93)
T 1weo_A 8 PKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDID 87 (93)
T ss_dssp SSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCCSC
T ss_pred CCcccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 001369 108 DLDH 111 (1091)
Q Consensus 108 d~~~ 111 (1091)
|+++
T Consensus 88 D~~~ 91 (93)
T 1weo_A 88 SGPS 91 (93)
T ss_dssp CCCS
T ss_pred cccc
Confidence 9753
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.44 E-value=5.8e-13 Score=158.86 Aligned_cols=128 Identities=19% Similarity=0.207 Sum_probs=98.5
Q ss_pred CCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001369 356 PSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPR 435 (1091)
Q Consensus 356 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR 435 (1091)
+..+|.|+|+|||+| | +..+..|+.|+++.+||. .+.|+|.|||.++-|.+.+ +
T Consensus 89 ~~~~p~vsviIp~~n---~-~~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~-------~-------------- 142 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---R-AKILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIV-------R-------------- 142 (625)
T ss_dssp -CCCCCEEEEEEESS---C-HHHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHH-------H--------------
T ss_pred cccCCcEEEEEecCC---c-HHHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHH-------H--------------
Confidence 456899999999997 6 478999999999999986 7899999999876221110 0
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001369 436 APEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 515 (1091)
Q Consensus 436 ~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~ 515 (1091)
.+.
T Consensus 143 ----------------------------------------~~~------------------------------------- 145 (625)
T 2z86_A 143 ----------------------------------------EFE------------------------------------- 145 (625)
T ss_dssp ----------------------------------------TTT-------------------------------------
T ss_pred ----------------------------------------Hhh-------------------------------------
Confidence 000
Q ss_pred CCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCc
Q 001369 516 SGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGK 594 (1091)
Q Consensus 516 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~-Dp~~g~ 594 (1091)
.-+++.|+.+++ +.+.||+|+|.+++. +.++||+++|+|+++ .|++|.+++.+|. +|
T Consensus 146 ---------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~~-~~~~l~~~~~~~~~~~---- 203 (625)
T 2z86_A 146 ---------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMAP-NPLWVQSYMELLAVDD---- 203 (625)
T ss_dssp ---------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEEE-CTTHHHHHHHHHHHCT----
T ss_pred ---------hcCCeEEEEeCC----CCcchhHHHHHHHHh----CCcCEEEEECCCCCC-CHHHHHHHHHHHhcCC----
Confidence 002577887654 345699999999996 689999999999995 8999999999885 66
Q ss_pred cEEEEecCccccCC
Q 001369 595 KICYVQFPQRFDGI 608 (1091)
Q Consensus 595 ~va~VQ~PQ~F~ni 608 (1091)
.++.|+..+.+++.
T Consensus 204 ~~~~~g~~~~~~~~ 217 (625)
T 2z86_A 204 NVALIGPRKYIDTS 217 (625)
T ss_dssp TEEEECCEEEECCT
T ss_pred ceEEEEeeeeccCc
Confidence 78888877766543
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.37 E-value=7.4e-12 Score=144.59 Aligned_cols=116 Identities=17% Similarity=0.109 Sum_probs=91.5
Q ss_pred CCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhh-hHHHhhhhHHHhhhhhhhhhhcCCCC
Q 001369 356 PSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAML-TFEALSETSEFARKWVPFCKKFNIEP 434 (1091)
Q Consensus 356 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~l-tf~al~Eaa~FA~~WvPFCkk~~Iep 434 (1091)
+..+|.|.|+||||| |+...+..||-|+++.+||.....|+|.|||...- |.+.|
T Consensus 25 ~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l--------------------- 80 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPL--------------------- 80 (472)
T ss_dssp CSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHH---------------------
T ss_pred CcCCCCeEEEEEeCC---CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHH---------------------
Confidence 457999999999997 88789999999999999997667899999998751 22111
Q ss_pred CCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhc
Q 001369 435 RAPEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLG 514 (1091)
Q Consensus 435 R~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~ 514 (1091)
+++++
T Consensus 81 ----------------------------------------~~~~~----------------------------------- 85 (472)
T 1xhb_A 81 ----------------------------------------ESYVK----------------------------------- 85 (472)
T ss_dssp ----------------------------------------HHHHH-----------------------------------
T ss_pred ----------------------------------------HHHHH-----------------------------------
Confidence 11111
Q ss_pred CCCCcCCCCCCCC-cEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhc-CC
Q 001369 515 QSGVRDVEGNELP-SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DP 590 (1091)
Q Consensus 515 ~~g~~d~~~~~lP-~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~-Dp 590 (1091)
++| ++.++..+++.| +++|+|.+++. +.|+||+.+|+|.. .+|++|.+++..+. +|
T Consensus 86 ----------~~~~~v~vi~~~~n~G-----~~~a~N~g~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~~ 143 (472)
T 1xhb_A 86 ----------KLKVPVHVIRMEQRSG-----LIRARLKGAAV----SRGQVITFLDAHCE-CTAGWLEPLLARIKHDR 143 (472)
T ss_dssp ----------SSSSCEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEEEESSEE-ECTTCHHHHHHHHHHCT
T ss_pred ----------HCCCcEEEEECCCCCC-----hHHHHHHHHHh----ccCCeEEEECCCeE-eCccHHHHHHHHHHhCC
Confidence 123 578888777555 99999999996 67999999999999 58999999999875 55
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.32 E-value=9.1e-12 Score=148.41 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=90.2
Q ss_pred CCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhh-HHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001369 357 SQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLT-FEALSETSEFARKWVPFCKKFNIEPR 435 (1091)
Q Consensus 357 ~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~lt-f~al~Eaa~FA~~WvPFCkk~~IepR 435 (1091)
+.+|.|.|+||||| |+...+..||-|+++..||...+.|+|.|||...-| .+.|
T Consensus 109 ~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l---------------------- 163 (570)
T 2d7i_A 109 ETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPL---------------------- 163 (570)
T ss_dssp SSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHH----------------------
T ss_pred CCCCCeEEEEEECC---CCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHH----------------------
Confidence 56899999999998 877899999999999999965568999999987633 1110
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001369 436 APEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 515 (1091)
Q Consensus 436 ~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~ 515 (1091)
+++++
T Consensus 164 ---------------------------------------~~~~~------------------------------------ 168 (570)
T 2d7i_A 164 ---------------------------------------EDYMA------------------------------------ 168 (570)
T ss_dssp ---------------------------------------HHHHT------------------------------------
T ss_pred ---------------------------------------HHHHH------------------------------------
Confidence 11110
Q ss_pred CCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcC
Q 001369 516 SGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 589 (1091)
Q Consensus 516 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~D 589 (1091)
+.|++.++..+++.| +++|+|.+++. ..++||+.||+|.++ +|++|.+++..+.+
T Consensus 169 ---------~~~~v~vi~~~~n~G-----~~~A~N~G~~~----A~gd~i~fLD~D~~~-~p~~L~~ll~~l~~ 223 (570)
T 2d7i_A 169 ---------LFPSVRILRTKKREG-----LIRTRMLGASV----ATGDVITFLDSHCEA-NVNWLPPLLDRIAR 223 (570)
T ss_dssp ---------TSTTEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEECCSSEEE-CTTCSHHHHHHHHH
T ss_pred ---------hCCeEEEEECCCCCC-----HHHHHHHHHHh----cCCCEEEEEcCCccc-cccHHHHHHHHHHh
Confidence 114678887776555 99999999996 589999999999996 89999999998854
No 6
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.31 E-value=2e-12 Score=135.50 Aligned_cols=124 Identities=14% Similarity=0.248 Sum_probs=92.5
Q ss_pred cceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCccc
Q 001369 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEW 439 (1091)
Q Consensus 360 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe~ 439 (1091)
|.|.|+||||| ++ ..+.+||.|+++++|| .+.++|.|||...-|.+.+.+
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~------------------------ 50 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRP------------------------ 50 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGG------------------------
T ss_pred CeEEEEEEcCC---CH-HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHHHHH------------------------
Confidence 67999999997 54 6889999999999998 588999999987633221110
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCc
Q 001369 440 YFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVR 519 (1091)
Q Consensus 440 YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g~~ 519 (1091)
++ .
T Consensus 51 -------------------------------------~~-----------------------------------~----- 53 (255)
T 1qg8_A 51 -------------------------------------FL-----------------------------------N----- 53 (255)
T ss_dssp -------------------------------------GG-----------------------------------G-----
T ss_pred -------------------------------------Hh-----------------------------------h-----
Confidence 00 0
Q ss_pred CCCCCCCCcEEEEeccCCCCC----CcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCc
Q 001369 520 DVEGNELPSLVYVSREKRPGF----EHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGK 594 (1091)
Q Consensus 520 d~~~~~lP~lvYvsRekRPg~----~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~-Dp~~g~ 594 (1091)
-|++.|+..+. ++. ....+++|+|.+++. ++|+||+.+|+|.++ .|++|.+.+..|. +|
T Consensus 54 ------~~~i~~i~~~~-~~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~~-~~~~l~~~~~~~~~~~---- 117 (255)
T 1qg8_A 54 ------DNRVRFYQSDI-SGVKERTEKTRYAALINQAIEM----AEGEYITYATDDNIY-MPDRLLKMVRELDTHP---- 117 (255)
T ss_dssp ------STTEEEEECCC-CSHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEEE-CTTHHHHHHHHHHHCT----
T ss_pred ------cCCEEEEeccc-ccccccccccCHHHHHHHHHHH----cCCCEEEEeCCCCcc-ChHHHHHHHHHHHhCC----
Confidence 02577777661 000 123499999999996 699999999999995 7999999999875 66
Q ss_pred cEEEEecCcccc
Q 001369 595 KICYVQFPQRFD 606 (1091)
Q Consensus 595 ~va~VQ~PQ~F~ 606 (1091)
++++|.....+.
T Consensus 118 ~~~~v~~~~~~~ 129 (255)
T 1qg8_A 118 EKAVIYSASKTY 129 (255)
T ss_dssp TCCEEEEEEEEE
T ss_pred CceEEEeceEEE
Confidence 688888876655
No 7
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.28 E-value=1.8e-11 Score=126.87 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=84.3
Q ss_pred CCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCc
Q 001369 358 QLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAP 437 (1091)
Q Consensus 358 ~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~P 437 (1091)
..|.|.|+||||| ++ ..+.++|.|+++.+|| .+.|+|.|||...-|.+.+.
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~----------------------- 53 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICD----------------------- 53 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHH-----------------------
T ss_pred CCCcEEEEEecCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHH-----------------------
Confidence 4688999999997 54 6789999999999998 58899999998763322111
Q ss_pred ccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCC
Q 001369 438 EWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSG 517 (1091)
Q Consensus 438 e~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g 517 (1091)
++.++
T Consensus 54 --------------------------------------~~~~~------------------------------------- 58 (240)
T 3bcv_A 54 --------------------------------------DYAAQ------------------------------------- 58 (240)
T ss_dssp --------------------------------------HHHHH-------------------------------------
T ss_pred --------------------------------------HHHhh-------------------------------------
Confidence 11100
Q ss_pred CcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCC
Q 001369 518 VRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDP 590 (1091)
Q Consensus 518 ~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp 590 (1091)
.|++.|+.. +. ..+++|.|.+++. .+|+||+.+|+|.++ .|++|.+.+..+.++
T Consensus 59 --------~~~i~~i~~-~n-----~G~~~a~N~g~~~----a~g~~i~~lD~Dd~~-~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 59 --------YPNIKVIHK-KN-----AGLGMACNSGLDV----ATGEYVAFCDSDDYV-DSDMYMTMYNVAQKY 112 (240)
T ss_dssp --------CSSEEEEEC-CC-----CCHHHHHHHHHHH----CCSSEEEECCTTCCC-CTTHHHHHHHHHHHH
T ss_pred --------CCCEEEEEC-CC-----CChHHHHHHHHHH----cCCCEEEEECCCCcC-CHHHHHHHHHHHHhc
Confidence 135667753 22 3499999999996 689999999999995 899999999988764
No 8
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.27 E-value=1.6e-11 Score=143.28 Aligned_cols=113 Identities=17% Similarity=0.116 Sum_probs=89.9
Q ss_pred CCCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001369 356 PSQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPR 435 (1091)
Q Consensus 356 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR 435 (1091)
+..+|.|.|+||||| |+...+..||.|+++..||...+.|+|.|||...-|.+.+
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------------------- 116 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------------------- 116 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG----------------------
T ss_pred CcCCCCEEEEEEeCc---CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH----------------------
Confidence 457999999999997 8766899999999999998655789999999876221100
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001369 436 APEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 515 (1091)
Q Consensus 436 ~Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~ 515 (1091)
+ +
T Consensus 117 -----------------------------------------~-~------------------------------------ 118 (501)
T 2ffu_A 117 -----------------------------------------L-G------------------------------------ 118 (501)
T ss_dssp -----------------------------------------G-G------------------------------------
T ss_pred -----------------------------------------H-h------------------------------------
Confidence 0 0
Q ss_pred CCCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCC
Q 001369 516 SGVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDP 590 (1091)
Q Consensus 516 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp 590 (1091)
..|++.|+..+++.| +++|+|.+++. ..|+||+.+|+|..+ .|++|.+.+..+.+.
T Consensus 119 ---------~~~~v~vi~~~~n~G-----~~~A~N~G~~~----A~gd~i~flD~D~~~-~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 119 ---------KIEKVRVLRNDRREG-----LMRSRVRGADA----AQAKVLTFLDSHCEC-NEHWLEPLLERVAED 174 (501)
T ss_dssp ---------GBTTEEEEECSSCCH-----HHHHHHHHHHH----CCSSEEEECCSSEEE-CTTCHHHHHHHHHHC
T ss_pred ---------cCCCEEEEECCCCcC-----HHHHHHHHHHh----cCCCEEEEECCCccc-CccHHHHHHHHHHhC
Confidence 124678887776544 89999999996 689999999999995 799999999988543
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.18 E-value=8.7e-11 Score=140.15 Aligned_cols=124 Identities=20% Similarity=0.273 Sum_probs=93.8
Q ss_pred CCCcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCC
Q 001369 357 SQLAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRA 436 (1091)
Q Consensus 357 ~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~ 436 (1091)
...|.|.|+||||| ++ ..+..+|-|+++.+|| .+.++|.|||...-|.+-+.
T Consensus 372 ~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~---------------------- 423 (625)
T 2z86_A 372 KRVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQ---------------------- 423 (625)
T ss_dssp CSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHH----------------------
T ss_pred ccCCeEEEEEeCCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECcCChhHHHHHH----------------------
Confidence 45789999999998 53 6789999999999998 57899999998763322111
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCC
Q 001369 437 PEWYFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQS 516 (1091)
Q Consensus 437 Pe~YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~ 516 (1091)
++.+
T Consensus 424 ---------------------------------------~~~~------------------------------------- 427 (625)
T 2z86_A 424 ---------------------------------------EHYA------------------------------------- 427 (625)
T ss_dssp ---------------------------------------HHHT-------------------------------------
T ss_pred ---------------------------------------HHHh-------------------------------------
Confidence 1110
Q ss_pred CCcCCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCcc
Q 001369 517 GVRDVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGKK 595 (1091)
Q Consensus 517 g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff-~Dp~~g~~ 595 (1091)
..|++.|+. ++.. .+++|+|.+++. ++|+||+.+|+|.++ .|++|.+.+..| .+| +
T Consensus 428 --------~~~~i~~~~-~~n~-----G~~~a~n~g~~~----a~g~~i~~ld~D~~~-~~~~l~~~~~~~~~~~----~ 484 (625)
T 2z86_A 428 --------NHPRVRFIS-QKNK-----GIGSASNTAVRL----CRGFYIGQLDSDDFL-EPDAVELCLDEFRKDL----S 484 (625)
T ss_dssp --------TCTTEEEEE-ECCC-----CHHHHHHHHHHH----CCSSEEEECCTTCEE-CTTHHHHHHHHHHHCT----T
T ss_pred --------hCCcEEEEe-CCCC-----CHHHHHHHHHHh----cCCCEEEEECCCccc-ChhHHHHHHHHHHhCC----C
Confidence 013567775 3322 499999999996 689999999999995 899999999876 577 7
Q ss_pred EEEEecCccccC
Q 001369 596 ICYVQFPQRFDG 607 (1091)
Q Consensus 596 va~VQ~PQ~F~n 607 (1091)
++.|.+...+.+
T Consensus 485 ~~~v~~~~~~~~ 496 (625)
T 2z86_A 485 LACVYTTNRNID 496 (625)
T ss_dssp CSEEEEEEEEEC
T ss_pred eeEEEeeeEEEC
Confidence 888888766544
No 10
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=98.74 E-value=3.4e-08 Score=120.05 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=46.7
Q ss_pred cEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhc-CCCCCccEEEEec
Q 001369 528 SLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYVQF 601 (1091)
Q Consensus 528 ~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~-Dp~~g~~va~VQ~ 601 (1091)
++.|+..+ ..| .|||.|.+++...-.++++||+.+|.|.++ .|++|.+.+.+|. +| +++.|+.
T Consensus 241 ~I~vI~~~-N~G-----~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~-~pd~L~~ll~~l~~~~----~~~~vg~ 304 (657)
T 4fix_A 241 RLSIHDQP-NLG-----GSGGYSRVMYEALKNTDCQQILFMDDDIRL-EPDSILRVLAMHRFAK----APMLVGG 304 (657)
T ss_dssp GEEEEECC-CCH-----HHHHHHHHHHHHHHHCCCSEEEEECSSEEE-CTHHHHHHHHHHHHBS----SCCEEEE
T ss_pred CEEEEECC-CCC-----HHHHHHHHHHHHHhcCCCCEEEEECCCCcc-ChhHHHHHHHHHHhCC----CcEEEEe
Confidence 57777644 233 799999998863212378999999999995 7999999999885 44 5666654
No 11
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.72 E-value=1.4e-09 Score=132.84 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred cceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhhhHHHhhhhHHHhhhhhhhhhhcCCCCCCccc
Q 001369 360 AKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEW 439 (1091)
Q Consensus 360 P~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~IepR~Pe~ 439 (1091)
|.|.|+||||| ++ ..+..||-|+++++|| .+.|+|.|||..+-|.+-+.+
T Consensus 2 p~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~------------------------ 51 (729)
T 3l7i_A 2 NKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDE------------------------ 51 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEcCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCCcHHHHHHH------------------------
Confidence 67999999997 54 6789999999999999 578999999987633332111
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCc
Q 001369 440 YFSQKIDYLRNKVHPAFVRERRAIKREYEEFKIRINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVR 519 (1091)
Q Consensus 440 YFs~~~~~~~~~~~~~f~~err~mkreYeE~k~rI~~l~~k~~~~p~~~w~m~dg~~w~g~~~rdhp~iiqv~l~~~g~~ 519 (1091)
++++ ++
T Consensus 52 -------------------------------------~~~~------------------------~~------------- 57 (729)
T 3l7i_A 52 -------------------------------------AIKD------------------------YD------------- 57 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------HHHh------------------------CC-------------
Confidence 0000 00
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhcCCCCCccEEEE
Q 001369 520 DVEGNELPSLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYV 599 (1091)
Q Consensus 520 d~~~~~lP~lvYvsRekRPg~~hh~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~Dp~~g~~va~V 599 (1091)
+++.|+..++.. .+++|.|.+++. ..|+||+.+|+|.++ .|++|.+.+..+.++ ++.+.
T Consensus 58 -------~~i~~i~~~~n~-----G~~~arN~gi~~----A~gdyI~flD~Dd~~-~p~~l~~l~~~l~~~----d~v~~ 116 (729)
T 3l7i_A 58 -------KNIRFIDLDENS-----GHAHARNIALEE----VETPYFMFLDADDEL-ASYAITFYLEKFNNT----DGLIA 116 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------CCEEEEECCCCC-----CHHHHHHHHHHh----ccCCEEEEECCCCCC-ChhHHHHHHHHhcCC----CEEEE
Confidence 135556555433 389999999985 689999999999995 899999999988754 45444
Q ss_pred ec
Q 001369 600 QF 601 (1091)
Q Consensus 600 Q~ 601 (1091)
..
T Consensus 117 ~~ 118 (729)
T 3l7i_A 117 PI 118 (729)
T ss_dssp --
T ss_pred ee
Confidence 43
No 12
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=98.69 E-value=5.3e-08 Score=107.86 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=43.1
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHh-hcCCCCCccEEEEecCc
Q 001369 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCF-MMDPQSGKKICYVQFPQ 603 (1091)
Q Consensus 544 ~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcf-f~Dp~~g~~va~VQ~PQ 603 (1091)
.|++|+|.+++. ++|+||+.+|+|.+...|++|.+.+.. +.+| ++++|+...
T Consensus 118 G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~----~~~~v~g~~ 170 (329)
T 3ckj_A 118 GKGEALWRSLAA----SRGDIVVFVDSDLINPHPMFVPWLVGPLLTGD----GVHLVKSFY 170 (329)
T ss_dssp SHHHHHHHHHHH----CCCSEEEECCTTEESCCTTHHHHHHHHHHSCS----SCCEEEEEE
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCCCcChHHHHHHHHHHHhCC----CccEEEEEe
Confidence 499999999986 689999999999983378999999987 4677 677777743
No 13
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=98.39 E-value=4.4e-07 Score=99.82 Aligned_cols=53 Identities=9% Similarity=-0.071 Sum_probs=40.4
Q ss_pred cchHHHHHHHhhcCcEEEEecCCCccc----------cccCCCCHHHHHHHHHHHhccchhHh
Q 001369 790 TEDILTGFKMHCHGWRSVYCIPKRACF----------KGSAPINLSDRLHQVLRWALGSVEIF 842 (1091)
Q Consensus 790 TEDi~Tg~rLh~rGWrsvY~~p~~aaf----------~G~aP~tl~~~lkQR~RWA~G~lQil 842 (1091)
.||.++.+|++.+||++.+..+....+ ....|+.+..+.+||.||+.+++..+
T Consensus 201 ~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~ 263 (287)
T 2fy7_A 201 GEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL 263 (287)
T ss_dssp CHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGGGC
T ss_pred cchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccC
Confidence 499999999999999888443211111 23578999999999999999999876
No 14
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=97.81 E-value=8.1e-05 Score=85.12 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=40.9
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhh-cCCCCCccEEEEec
Q 001369 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGKKICYVQF 601 (1091)
Q Consensus 544 ~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff-~Dp~~g~~va~VQ~ 601 (1091)
.|++|+|.+++. ..++||+.+|+|.....|++|.+.+..+ .+| ++.+|..
T Consensus 166 G~g~A~n~G~~~----A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p----~~d~v~G 216 (387)
T 3f1y_A 166 GKGDAMWRALSV----TRGDLVLYIDADTRDFRPQLAYGVLGPVLEVP----GVRFVKA 216 (387)
T ss_dssp SHHHHHHHHTTT----CCSSEEEECCTTCSSCCTHHHHTTHHHHHHST----TCCEEEE
T ss_pred CHHHHHHHHHHh----cCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCC----CceEEEE
Confidence 399999999985 5899999999999833799999999876 566 5566655
No 15
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=97.32 E-value=0.0019 Score=68.50 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=38.5
Q ss_pred hhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhc-----CCCCCccEEEE
Q 001369 546 AGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-----DPQSGKKICYV 599 (1091)
Q Consensus 546 AGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~-----Dp~~g~~va~V 599 (1091)
|.|+|.+++. ..|+||+.||.|-++ .+++|.+.+-++. || +++.|
T Consensus 63 a~a~N~Gi~~----A~g~yl~fln~D~~~-~~~~l~~l~~~~~~~~~~~~----~vg~v 112 (249)
T 2nxv_A 63 FSWHKQMLPR----CKGRYVIFCHEDVEL-VDRGYDDLVAAIEALEEADP----KWLVA 112 (249)
T ss_dssp TTHHHHHGGG----CCSSEEEEEETTEEC-SSCCHHHHHHHHHHHHHHCT----TEEEE
T ss_pred HHHHHHHHHh----cCCCEEEEECCCccc-CccHHHHHHHHHHhcccCCC----CeeEE
Confidence 7889999985 689999999999996 8899999998886 37 67765
No 16
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.61 E-value=0.0023 Score=57.35 Aligned_cols=52 Identities=31% Similarity=0.912 Sum_probs=43.2
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
...|.||-+.+.. +.-.|.+| .||.-.|+.|+..-.++++..||.|+++|..
T Consensus 11 ~~~CpICle~~~~--~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 11 PVECPLCMEPLEI--DDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCBCTTTCCBCCT--TTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CCcCCccCccCcc--cccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4589999997632 33468889 9999999999987777788999999999965
No 17
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=95.33 E-value=0.029 Score=63.32 Aligned_cols=44 Identities=20% Similarity=0.189 Sum_probs=36.9
Q ss_pred CcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChh
Q 001369 359 LAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 407 (1091)
Q Consensus 359 lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 407 (1091)
|+.+-|+|+||| -| . +..++-|++++..+.++.-++|+|||...
T Consensus 1 ~~~~pViI~~yN---Rp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEECC---cH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 345778999997 66 6 99999999999977777889999999754
No 18
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=93.50 E-value=0.41 Score=55.02 Aligned_cols=46 Identities=15% Similarity=-0.047 Sum_probs=33.8
Q ss_pred ccchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHHHhhc
Q 001369 543 HKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM 588 (1091)
Q Consensus 543 h~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~amcff~ 588 (1091)
..|.+|||++++...-..+|++|+.+|||-.-..|+.+.+.+..+.
T Consensus 74 ~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 74 PGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAAD 119 (397)
T ss_dssp SSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 3499999999922100268999999999985126889998877663
No 19
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=90.62 E-value=1.2 Score=51.25 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=29.2
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCChHHHHHHHH
Q 001369 544 KKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAM 584 (1091)
Q Consensus 544 ~KAGamNallrvSav~tn~p~Il~lDcDh~~~n~~~Lr~am 584 (1091)
.|..||-+.+.++. ...+++|+.+|||-++ |.++.+..
T Consensus 144 GKG~Am~aGl~~A~-~~~gd~Vv~~DaDl~i--P~~v~~~~ 181 (394)
T 2zu9_A 144 GKGEGMLVGLLLAK-AIGAEYVGFVDADNYI--PGAVNEYV 181 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCSEEEECCSCBSC--HHHHHHHH
T ss_pred ChHHHHHHHHHHHh-hCCCCEEEEEeCCCCC--HHHHHHHH
Confidence 49999999998642 1289999999999974 77775543
No 20
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=89.20 E-value=0.34 Score=41.23 Aligned_cols=50 Identities=34% Similarity=0.609 Sum_probs=36.9
Q ss_pred CCccccccccccccCCCCCccccCCCCCC---CcchhhHHHHHhh-cCCCCCCChhhhc
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAF---PVCRPCYEYERRE-GNQACPQCKTRYK 89 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~F---pvCrpCyeyerke-G~~~CPqCkt~Yk 89 (1091)
.+..|.||-++ .++++..+| .|.= -|=+.|.+-=.++ |+..||.||++|+
T Consensus 5 ~~~~CrIC~~~----~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEE----LGNERFRAC-GCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEE----CSCCCCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecC----CCCceecCc-CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45589999876 234578898 6743 4557788665654 6899999999996
No 21
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.09 E-value=0.48 Score=39.78 Aligned_cols=54 Identities=26% Similarity=0.668 Sum_probs=39.0
Q ss_pred CCccccccccccccCC-CCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 35 SGQTCQICEDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~-~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
....|.||-+...... .++..+.- .|+--.|+.|.+--.+. +..||-|++++.+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 4568999999865443 34444433 78899999999654444 6899999998753
No 22
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.01 E-value=0.64 Score=41.74 Aligned_cols=54 Identities=24% Similarity=0.537 Sum_probs=39.6
Q ss_pred cCCccccccccccccCCCCCccccCCCCC---CCcchhhHHHHHhh-cCCCCCCChhhhcc
Q 001369 34 LSGQTCQICEDEIEITDNGEPFVACNECA---FPVCRPCYEYERRE-GNQACPQCKTRYKR 90 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~---FpvCrpCyeyerke-G~~~CPqCkt~Ykr 90 (1091)
.....|.||-++. ++++.+..+| .|. --+.+.|-+-=.+. ++..||.|++.|.-
T Consensus 13 ~~~~~C~IC~~~~--~~~~~l~~pC-~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEG--DDESPLITPC-HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCC--CSSSCEECSS-SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccc--cCCCeeEecc-ccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4466999998774 3445567788 663 67999999655554 44799999999964
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.07 E-value=0.46 Score=40.12 Aligned_cols=48 Identities=19% Similarity=0.514 Sum_probs=36.9
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
...|.||.+... ++.+ -.|+--.|+.|.+--.+.++..||.|+++++.
T Consensus 15 ~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLC-----SPKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEES-----SCCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhc-----CeeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 458999988753 2222 26888899999977776778899999998854
No 24
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=85.98 E-value=0.32 Score=41.29 Aligned_cols=55 Identities=25% Similarity=0.666 Sum_probs=39.8
Q ss_pred cCCccccccccccccC-CCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 34 LSGQTCQICEDEIEIT-DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~-~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
.....|.||-+..... .+|+..+.- .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 3456899999986554 345544444 78999999999654443 4799999998853
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.26 E-value=0.63 Score=39.12 Aligned_cols=53 Identities=21% Similarity=0.555 Sum_probs=37.2
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
...|.||-+++..+.. ..++.= .||--.|+.|.+--..+++..||.|++++.+
T Consensus 3 ~~~C~IC~~~~~~~~~-~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS-LKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSS-CCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCc-cCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3589999884333321 122322 6788999999976656777899999999865
No 26
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=83.61 E-value=1.8 Score=37.51 Aligned_cols=53 Identities=23% Similarity=0.540 Sum_probs=36.5
Q ss_pred cCCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 34 LSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
.....|.||-+.+.. ++..+.- .|+--.|+.|.+--. +.+..||-|++++...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~~~-~C~H~fc~~Ci~~~~-~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYAL---GESVRQL-PCNHLFHDSCIVPWL-EQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCT---TSCEEEC-TTSCEEETTTTHHHH-TTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccC---CCCEEEe-CCCCeecHHHHHHHH-HcCCcCcCcCCccCCc
Confidence 345699999988643 2332222 478889999995444 3458999999988554
No 27
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=83.41 E-value=3.1 Score=47.48 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=31.3
Q ss_pred CcceEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCChhh
Q 001369 359 LAKVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAML 408 (1091)
Q Consensus 359 lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~l 408 (1091)
+..+-|+||+|| |.. +++-++++.-|. ...+.|.|||..+-
T Consensus 52 ~~klSIVVPvYN---Ee~----~lLesVl~qi~~--d~eIIlVdDGS~D~ 92 (391)
T 2wvl_A 52 LEQTAIVVPTRN---ERL----KLLEGVLSGIPH--EALILVASNSSPDR 92 (391)
T ss_dssp HTTEEEEEEESS---CCH----HHHHHHHHTSCT--TSEEEEEECCCHHH
T ss_pred HhceEEEEeccC---cHH----HHHHHHHhcCCC--CceEEEEECCCCCC
Confidence 556899999998 775 356677777664 47799999998663
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=83.11 E-value=0.56 Score=40.77 Aligned_cols=47 Identities=15% Similarity=0.287 Sum_probs=37.2
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
.-.|.||.+.. . ++.+. .|+.-.|+.|.+--.+.|+..||.|++++.
T Consensus 8 ~~~C~IC~~~~-~----~Pv~~--~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 8 YFRCPISLELM-K----DPVIV--STGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSCTTTSCCC-S----SEEEE--TTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cCCCCCccccc-c----CCEEc--CCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 45899998753 2 24332 699999999998878888899999999874
No 29
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=82.78 E-value=0.37 Score=39.86 Aligned_cols=53 Identities=26% Similarity=0.663 Sum_probs=38.4
Q ss_pred CccccccccccccCC-CCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~-~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
...|.||-+...... +++..+.- .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 458999999865443 34444444 78999999999654444 7899999998854
No 30
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=82.64 E-value=0.68 Score=46.24 Aligned_cols=48 Identities=29% Similarity=0.765 Sum_probs=38.0
Q ss_pred ccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
..|.||-+... ++ |.+..|+--.|+.|.+--.+.++..||.|++++..
T Consensus 55 ~~C~IC~~~~~-----~p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLK-----NT-MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCS-----SE-EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhh-----Cc-CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 38999988753 13 33347899999999988888888999999999854
No 31
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.91 E-value=0.63 Score=41.77 Aligned_cols=61 Identities=23% Similarity=0.486 Sum_probs=44.7
Q ss_pred cccCCceEEEeecccccccccccccCCccccccccccccCCCCCccccCCCCCCCcchhhHHHHH
Q 001369 10 GSHNRNEFVLINADETARIKSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYER 74 (1091)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyer 74 (1091)
||.-.|||.+++.-+. ..+..+-+...|..|+...|+- +.--+.|..|...||+.|-.+.+
T Consensus 1 ~~~~~~eL~elrrkga--k~~s~~~~~r~CarC~~~LG~l--~~~g~~C~~Ck~rVC~~Crv~~~ 61 (76)
T 2csz_A 1 GSSGSSGLLEIKRKGA--KRGSQHYSDRTCARCQESLGRL--SPKTNTCRGCNHLVCRDCRIQES 61 (76)
T ss_dssp CCCCCCCCCCCCCCCS--CSCCTTCCCCBCSSSCCBCSSS--CTTTSEETTTTEECCTTSEEECS
T ss_pred CchhHHHHHHHHHccc--cCcCcCCCccchhhhCcccccc--ccCCCcCcccChhhcccccccCC
Confidence 4555899988885432 1223456677999999999986 44457899999999999976543
No 32
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=81.26 E-value=1.3 Score=35.66 Aligned_cols=49 Identities=24% Similarity=0.552 Sum_probs=34.4
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhh
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Y 88 (1091)
...|.||-+++.. |+..+....|+--.|+.|.+ +.-..+..||-|++++
T Consensus 5 ~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~-~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 5 GVECAVCLAELED---GEEARFLPRCGHGFHAECVD-MWLGSHSTCPLCRLTV 53 (55)
T ss_dssp SCCCTTTCCCCCT---TSCCEECSSSCCEECTTHHH-HTTTTCCSCSSSCCCS
T ss_pred CCcCccCCccccC---CCceEECCCCCCcccHHHHH-HHHHcCCcCcCCCCEe
Confidence 4589999988643 33334343578889999994 3334478999999865
No 33
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=80.11 E-value=1.5 Score=35.27 Aligned_cols=50 Identities=28% Similarity=0.616 Sum_probs=35.3
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhh
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Y 88 (1091)
....|.||-+.+... ++. +..-.|+--.|+.|.+--.+.. ..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~~--~~~-~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS--RVV-AHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTT--TSC-EEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCcCcccChhhcCC--CcC-eEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 356899999886422 222 2333578899999996555555 8999999765
No 34
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.07 E-value=0.94 Score=38.63 Aligned_cols=49 Identities=29% Similarity=0.681 Sum_probs=36.2
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHh--hcCCCCCCChhhhcc
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR--EGNQACPQCKTRYKR 90 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerk--eG~~~CPqCkt~Ykr 90 (1091)
....|.||-+... ++.+ . .|+--.|+.|.+--.+ .++..||.|++++..
T Consensus 19 ~~~~C~IC~~~~~-----~~~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQ-----KPVT-I-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCS-----SEEE-C-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccC-----CeEE-c-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3458999998754 2322 2 6899999999966554 366799999999864
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=79.08 E-value=1.1 Score=42.56 Aligned_cols=47 Identities=26% Similarity=0.680 Sum_probs=35.7
Q ss_pred ccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
..|.||-+..- ++.+ - .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 53 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF-----RPIT-T-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc-----CcEE-e-eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47999988754 2322 2 6899999999976666666799999999854
No 36
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=78.65 E-value=1.9 Score=36.22 Aligned_cols=49 Identities=24% Similarity=0.565 Sum_probs=34.3
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
...|.||-+... +..... .|+--.|+.|.+--. +.+..||-|++++...
T Consensus 5 ~~~C~IC~~~~~---~~~~~~---~C~H~fc~~Ci~~~~-~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 5 AERCPICLEDPS---NYSMAL---PCLHAFCYVCITRWI-RQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCSSCCSCCC---SCEEET---TTTEEESTTHHHHHH-HHSCSTTTTCCCCCCE
T ss_pred CCCCeeCCcccc---CCcEec---CCCCeeHHHHHHHHH-hCcCcCcCCChhhHhh
Confidence 458999998853 111233 478889999996544 3458999999998643
No 37
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=78.25 E-value=1.7 Score=40.44 Aligned_cols=59 Identities=22% Similarity=0.501 Sum_probs=40.6
Q ss_pred CCccccccccccccCC-----------CCCccccCCCCCCCcchhhHHHHHh----hcCCCCCCChhhhccccC
Q 001369 35 SGQTCQICEDEIEITD-----------NGEPFVACNECAFPVCRPCYEYERR----EGNQACPQCKTRYKRLKG 93 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~-----------~G~~fvaC~eC~FpvCrpCyeyerk----eG~~~CPqCkt~Ykr~kg 93 (1091)
....|.||-+.+...+ +-...+..-.|+=-.|+.|.+--.+ +++..||-|++.|...+|
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 3458999998865432 1112333446788899999975554 456799999999966544
No 38
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.27 E-value=2.1 Score=37.60 Aligned_cols=52 Identities=21% Similarity=0.449 Sum_probs=36.8
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhh--cCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERRE--GNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerke--G~~~CPqCkt~Ykr 90 (1091)
...|.||-+....+ ....+.- .|+-..|+.|.+--.+. +...||.|+++++.
T Consensus 15 ~~~C~IC~~~~~~~--~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 15 VLECPICMESFTEE--QLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCBCTTTCCBCCTT--SSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCccCCcccccc--CCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 45899999875432 2223333 68999999999765554 36899999998854
No 39
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=75.99 E-value=1.4 Score=45.39 Aligned_cols=47 Identities=13% Similarity=0.024 Sum_probs=36.2
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
.-+|.||++- +. ++.+. .||.-.||.|-+--.+++...||.|++++.
T Consensus 106 ~f~CPI~~el-m~----DPV~~--~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 106 YLCGKISFEL-MR----EPCIT--PSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hhcccCcccc-CC----CCeEC--CCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 4589999864 33 47666 499999999998777664457999999884
No 40
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.66 E-value=2.6 Score=36.51 Aligned_cols=48 Identities=27% Similarity=0.868 Sum_probs=35.0
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHh-----hcCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR-----EGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerk-----eG~~~CPqCkt~Ykr 90 (1091)
...|.||-+...- + +.. .|+-..|+.|.+--.+ .+...||.|++++..
T Consensus 19 ~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQ-----P-LSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSS-----C-BCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCC-----c-eeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4589999987521 2 222 5888999999965433 357899999999854
No 41
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=75.02 E-value=1.6 Score=46.34 Aligned_cols=48 Identities=13% Similarity=0.078 Sum_probs=36.6
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhc
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
..-.|.||.+-. -++.+. .||.-.||.|-+--.+++...||.|+++..
T Consensus 207 ~~~~c~i~~~~~-----~dPv~~--~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELM-----REPCIT--PSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBC-----SSEEEC--SSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHh-----cCCeEC--CCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 455899998652 235443 489999999998777777677999999884
No 42
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.02 E-value=2.8 Score=36.33 Aligned_cols=48 Identities=31% Similarity=0.834 Sum_probs=35.0
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhh-----cCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERRE-----GNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerke-----G~~~CPqCkt~Ykr 90 (1091)
...|.||-+.... + +.. .|+-..|+.|.+--.+. ++..||.|++++..
T Consensus 19 ~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKE-----P-VSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSS-----C-EEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCc-----c-eeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4589999887532 2 123 57889999999765544 47899999998853
No 43
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=73.96 E-value=2.9 Score=35.22 Aligned_cols=52 Identities=23% Similarity=0.516 Sum_probs=35.8
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
....|.||-+.+. +++..+.- .|+--.|+.|..--.+. +..||-|+++....
T Consensus 13 ~~~~C~IC~~~~~---~~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILE---EGEDVRRL-PCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCC---SSSCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCeeCCcccc---CCCcEEEe-CCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 4568999998764 23333333 57888899999543333 56799999988553
No 44
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=72.31 E-value=2.4 Score=38.93 Aligned_cols=48 Identities=23% Similarity=0.589 Sum_probs=37.7
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
...|.||-+..- .-|.|-.|+--.|+.|..--.+.....||.|++++.
T Consensus 22 ~~~C~IC~~~~~------~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLR------DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCS------SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCcccc------CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 348999998853 235556899999999997666666579999999984
No 45
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.18 E-value=5.2 Score=34.14 Aligned_cols=49 Identities=20% Similarity=0.489 Sum_probs=35.1
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
...|.||-+...- +.+ ...|+--.|+.|.+--.+. +..||.|+++++..
T Consensus 15 ~~~C~IC~~~~~~-----p~~-~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLID-----ATT-ITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSS-----CEE-CSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHC-----cCE-ECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcc
Confidence 4589999876432 222 2357888899999665544 68999999998654
No 46
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=67.59 E-value=2.9 Score=39.44 Aligned_cols=48 Identities=25% Similarity=0.754 Sum_probs=33.3
Q ss_pred cccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
.|.+|+-.|-.- |. .++| .=-.|-.|++.-.+++++.||.|+.+..|.
T Consensus 3 fC~~C~~Pi~iy--gR-mIPC---kHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVY--GR-MIPC---KHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEE--EE-EETT---CCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEE--ee-eccc---cccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 456666553321 22 2344 335699999877889999999999999776
No 47
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=67.44 E-value=1.4 Score=46.21 Aligned_cols=29 Identities=31% Similarity=0.610 Sum_probs=22.8
Q ss_pred cCCccccccccccccC----CCCCccccCCCCCCCcchhhHHH
Q 001369 34 LSGQTCQICEDEIEIT----DNGEPFVACNECAFPVCRPCYEY 72 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~----~~G~~fvaC~eC~FpvCrpCyey 72 (1091)
.+..+|++||+.|+-+ .||. +||++|++.
T Consensus 170 ~~~~~C~~CGE~~~~~~~~~~~g~----------~~C~~C~~~ 202 (204)
T 2gvi_A 170 GAKVRCDVCGEYTYEADAKLLNGK----------PVCKPDYYG 202 (204)
T ss_dssp CCEEECTTTCCEEEGGGCEEETTE----------EECHHHHHC
T ss_pred CCceECCCCCCchhhcceeeeCCc----------EEChhhhcc
Confidence 3466899999998875 4665 799999964
No 48
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.02 E-value=4.5 Score=34.51 Aligned_cols=51 Identities=20% Similarity=0.541 Sum_probs=35.7
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
...|.||-+.+.. ++..+.. .|+-..|+.|..--.+. +..||-|++++...
T Consensus 15 ~~~C~IC~~~~~~---~~~~~~~-~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 15 HELCAVCLEDFKP---RDELGIC-PCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp SCBCSSSCCBCCS---SSCEEEE-TTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred CCCCcCCCcccCC---CCcEEEc-CCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 5589999998543 3333333 47888999999644444 46999999988543
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=66.95 E-value=3 Score=39.27 Aligned_cols=47 Identities=23% Similarity=0.554 Sum_probs=36.2
Q ss_pred ccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
-.|.||.+..- ++ |.. .|+--.|+.|.+--.+.++..||.|+++...
T Consensus 19 ~~C~IC~~~~~-----~p-~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhc-----Ce-EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 48999997753 23 334 6899999999987777776799999988754
No 50
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=66.23 E-value=3.6 Score=37.33 Aligned_cols=48 Identities=19% Similarity=0.457 Sum_probs=34.5
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
...|.||-+... ++.+ ...|+--.|+.|.+--.+ .+..||.|++++..
T Consensus 22 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN-----IAMI-IPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS-----SEEE-CTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCcccCChhhC-----CcCE-ECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 358999988753 1322 236899999999965544 45899999998854
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=66.04 E-value=3.2 Score=37.19 Aligned_cols=46 Identities=7% Similarity=-0.060 Sum_probs=34.8
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
.-.|.||++- +. ++.+. .||.-.||.|-+--.+ ++..||.|++++.
T Consensus 14 ~~~CpI~~~~-m~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 14 EFRDPLMDTL-MT----DPVRL--PSGTVMDRSIILRHLL-NSPTDPFNRQMLT 59 (85)
T ss_dssp TTBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred heECcccCch-hc----CCeEC--CCCCEECHHHHHHHHh-cCCCCCCCcCCCC
Confidence 4589999764 33 25443 3899999999977766 4789999998874
No 52
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.87 E-value=4.2 Score=34.62 Aligned_cols=49 Identities=18% Similarity=0.419 Sum_probs=34.3
Q ss_pred cCCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 34 LSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
.....|.||-+.... . ... .|+--.|+.|.+--.+. +..||-|++++..
T Consensus 13 ~~~~~C~IC~~~~~~---~-~~~---~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---P-VSL---PCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS---E-EEE---TTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC---C-EEc---cCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 445689999887521 1 233 47888999999543333 4899999999864
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.39 E-value=2.8 Score=36.07 Aligned_cols=52 Identities=17% Similarity=0.429 Sum_probs=36.1
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
....|.||-+++.. ++..+.- .|+--.|+.|.+--.+ .+..||-|++++...
T Consensus 22 ~~~~C~IC~~~~~~---~~~~~~l-~C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFES---RQLLRVL-PCNHEFHAKCVDKWLK-ANRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCB---TCEEEEE-TTTEEEETTHHHHHHH-HCSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCC---CCeEEEE-CCCCHhHHHHHHHHHH-cCCcCcCcCCcCCCC
Confidence 45689999988643 3333322 4788899999954443 357999999887554
No 54
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.68 E-value=6.3 Score=34.36 Aligned_cols=46 Identities=24% Similarity=0.568 Sum_probs=33.9
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
...|.||-+..- ++.+ -.|+--.|+.|..--.+ .+..||.|++++.
T Consensus 15 ~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQ-----NPVV--TKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCC-----SEEE--CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCcCCCchhc-----CeeE--ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 458999988762 1322 26788889999965554 4689999999884
No 55
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=64.44 E-value=3.9 Score=40.57 Aligned_cols=47 Identities=23% Similarity=0.689 Sum_probs=35.6
Q ss_pred ccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
..|.||-+..- ++.+ -.|+--.|+.|.+--.+.++..||.|++++..
T Consensus 79 ~~C~IC~~~~~-----~pv~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT--TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCS-----SEEE--CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhc-----CCEE--cCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 48999988642 2322 26888899999977777776799999999854
No 56
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=63.78 E-value=7.5 Score=33.45 Aligned_cols=49 Identities=24% Similarity=0.584 Sum_probs=34.9
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhh-cCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERRE-GNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerke-G~~~CPqCkt~Ykr 90 (1091)
...|.||-+..- ++.+ -..|+--.|+.|.+--.++ +...||.|++++.+
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 15 ELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGSCSSSCCCCT-----TCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCcCCChHHh-----CCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 458999977643 2322 3348999999999766554 45799999997644
No 57
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=63.24 E-value=1.6 Score=40.86 Aligned_cols=48 Identities=27% Similarity=0.807 Sum_probs=36.0
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
.-.|.||-+..- ++.+- .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 15 ~~~C~iC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV-----EPVTL--PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS-----SCEEC--TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC-----ceeEc--CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 348999997753 23222 6899999999965556677899999999864
No 58
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=63.10 E-value=3.1 Score=38.65 Aligned_cols=46 Identities=7% Similarity=-0.055 Sum_probs=34.7
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
.-.|.||++- +. ++.+. .||.-.||.|-+--.+ ++..||.|+.++.
T Consensus 29 ~~~CpI~~~~-m~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 29 EFRDPLMDTL-MT----DPVRL--PSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTBCTTTCSB-CS----SEEEE--TTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred hhCCcCccCc-cc----CCeEC--CCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 4589999753 33 35444 3899999999977665 5789999999873
No 59
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=62.64 E-value=3.6 Score=37.04 Aligned_cols=49 Identities=22% Similarity=0.583 Sum_probs=34.9
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhh
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Y 88 (1091)
....|.||-++.. +|+..+.. .|+=-.|+.|..- .-..+..||-|+.++
T Consensus 39 ~~~~C~IC~~~~~---~~~~~~~l-~C~H~Fh~~Ci~~-wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 39 QEMCCPICCSEYV---KGDVATEL-PCHHYFHKPCVSI-WLQKSGTCPVCRCMF 87 (91)
T ss_dssp SCSEETTTTEECC---TTCEEEEE-TTTEEEEHHHHHH-HHTTTCBCTTTCCBS
T ss_pred CCCCCcccChhhc---CCCcEEec-CCCChHHHHHHHH-HHHcCCcCcCcCccC
Confidence 3458999998864 34444444 3788899999844 334568999999876
No 60
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=62.49 E-value=0.81 Score=46.15 Aligned_cols=51 Identities=22% Similarity=0.517 Sum_probs=42.2
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhh
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~ 87 (1091)
+...|.+|+...|+- +..-+.|..|...||+.|-.|-++++.=.|--|-..
T Consensus 67 ~~~~C~~C~~~fg~l--~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLL--LNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGC--SSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccc--cCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 567999999998876 334688999999999999988888887888777554
No 61
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.92 E-value=5.9 Score=36.38 Aligned_cols=48 Identities=29% Similarity=0.667 Sum_probs=33.9
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHh--hcCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR--EGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerk--eG~~~CPqCkt~Ykr 90 (1091)
...|.||-+..- ++.+ . .|+--.|+.|.+--.+ .+...||.|++++..
T Consensus 21 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 348999988652 1222 2 6888999999975554 344689999988754
No 62
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=61.24 E-value=3.2 Score=40.87 Aligned_cols=37 Identities=22% Similarity=0.600 Sum_probs=29.8
Q ss_pred ccCCccccccccccccC-CCCCccccCCCCCCCcchhhHHH
Q 001369 33 ELSGQTCQICEDEIEIT-DNGEPFVACNECAFPVCRPCYEY 72 (1091)
Q Consensus 33 ~~~~~~C~iCgd~vg~~-~~G~~fvaC~eC~FpvCrpCyey 72 (1091)
+.+...|.+|+...|+- ..| +.|..|...||+.|-.+
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g---~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSAS---VVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCE---EECTTTCCEEETTSEEE
T ss_pred cCCCccccccCCCcccccCCC---CCCCCCCcccccccCCc
Confidence 34667999999999754 344 78999999999999754
No 63
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.37 E-value=5.5 Score=35.15 Aligned_cols=55 Identities=22% Similarity=0.483 Sum_probs=37.5
Q ss_pred CCccccccccccccC--------CCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 35 SGQTCQICEDEIEIT--------DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~--------~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
....|.||-+++... ..++..+.-..|+=--|+.|.+-=. +.++.||-|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWV-KQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHT-TTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHH-HhCCCCCCcCCCcch
Confidence 455899999987542 2344333333688889999985433 345799999998854
No 64
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.90 E-value=7.7 Score=32.02 Aligned_cols=42 Identities=29% Similarity=0.738 Sum_probs=31.2
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhh--cCCCCCCC
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERRE--GNQACPQC 84 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerke--G~~~CPqC 84 (1091)
...|.||-+..- ++.+ - .|+--.|+.|.+--.+. ++..||.|
T Consensus 20 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQ-----KPVT-I-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCS-----SCEE-C-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhC-----CeEE-e-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 458999988753 2333 2 68999999999766654 66789988
No 65
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.65 E-value=4.5 Score=34.17 Aligned_cols=48 Identities=23% Similarity=0.663 Sum_probs=34.9
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
....|.||-+.... ...+ |+--.|+.|.+ +.-..+..||-|+++....
T Consensus 14 ~~~~C~IC~~~~~~-----~~~~---CgH~fc~~Ci~-~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-----LILP---CAHSFCQKCID-KWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-----EEET---TTEEECHHHHH-HSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-----cccC---CCCcccHHHHH-HHHHCcCcCCCcCCcccCC
Confidence 34589999887422 4444 57778999995 3334789999999998653
No 66
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=58.88 E-value=4.9 Score=49.88 Aligned_cols=58 Identities=29% Similarity=0.738 Sum_probs=42.6
Q ss_pred cCCccccccccccccCCC---CCccccCCCCC--------------------CCcchhhHH-HH----Hh--hcCCCCCC
Q 001369 34 LSGQTCQICEDEIEITDN---GEPFVACNECA--------------------FPVCRPCYE-YE----RR--EGNQACPQ 83 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~---G~~fvaC~eC~--------------------FpvCrpCye-ye----rk--eG~~~CPq 83 (1091)
..-.+|.-|=.++---.| .-+|+.|..|| ||.|..|.+ |+ || ----+||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 455689999988753332 56899999998 999999973 44 33 12258999
Q ss_pred Chhhhccc
Q 001369 84 CKTRYKRL 91 (1091)
Q Consensus 84 Ckt~Ykr~ 91 (1091)
|+=++.-.
T Consensus 189 CGP~l~l~ 196 (761)
T 3vth_A 189 CGPSLSFV 196 (761)
T ss_dssp TSCCEEEE
T ss_pred cCCeeEEe
Confidence 99888543
No 67
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=58.67 E-value=4.7 Score=40.20 Aligned_cols=47 Identities=23% Similarity=0.554 Sum_probs=37.5
Q ss_pred ccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
-.|.||.+..- ++ |.+ .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 19 ~~C~IC~~~~~-----~p-v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhc-----Cc-EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 48999998643 23 446 7999999999988777777899999988754
No 68
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=58.57 E-value=6 Score=36.89 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=36.7
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
...|.||-+..- ++.+ . .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 23 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA-----DPVE-T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS-----SEEE-C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc-----CcEE-c-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 458999987752 2333 3 6899999999977777767899999998854
No 69
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=58.19 E-value=5.8 Score=35.33 Aligned_cols=48 Identities=23% Similarity=0.574 Sum_probs=34.4
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHh-hcCCCCCCChhhhc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERR-EGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerk-eG~~~CPqCkt~Yk 89 (1091)
.-.|.||.+..- ++.+ -..|+--.|+.|.+--.+ .++..||.|++++.
T Consensus 13 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEECS-----SCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChhhc-----CceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 458999997642 2322 223899999999975554 35579999999873
No 70
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=57.64 E-value=3.6 Score=38.58 Aligned_cols=54 Identities=26% Similarity=0.692 Sum_probs=39.8
Q ss_pred CCccccccccccccC-CCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 35 SGQTCQICEDEIEIT-DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~-~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
+...|.||-+.+... +.+...+.+ .|+-..|..|.+--.+. +..||.|++.+..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 455899998876543 345555656 89999999999655544 5799999998854
No 71
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=57.33 E-value=4.6 Score=41.97 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=21.5
Q ss_pred cCCccccccccccccCCCCCccccCCCCCCCcchhhHH
Q 001369 34 LSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYE 71 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCye 71 (1091)
....+|++||+.|+-. +=+||++|++
T Consensus 161 ~~~~~C~~CGE~~~~~------------g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ------------DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG------------GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC------------CCcCCccccC
Confidence 4667999999998866 5589999984
No 72
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=57.23 E-value=5 Score=38.84 Aligned_cols=45 Identities=29% Similarity=0.660 Sum_probs=31.9
Q ss_pred cccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
.|.||-+..- ++ |.. .|+--.|+.|..--. +.+..||.|+++.+.
T Consensus 55 ~C~iC~~~~~-----~~-~~~-~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCIICSEYFI-----EA-VTL-NCAHSFCSYCINEWM-KRKIECPICRKDIKS 99 (138)
T ss_dssp BCTTTCSBCS-----SE-EEE-TTSCEEEHHHHHHHT-TTCSBCTTTCCBCCC
T ss_pred CCcccCcccC-----Cc-eEC-CCCCCccHHHHHHHH-HcCCcCCCCCCcCCC
Confidence 6999988752 12 223 478889999985433 446789999988753
No 73
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=56.62 E-value=5.7 Score=36.64 Aligned_cols=48 Identities=19% Similarity=0.533 Sum_probs=34.7
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
.-.|.||.+..- ++.+ ...|+-..|+.|.+--.+. +..||.|++++..
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATT-IIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCS-----SEEE-ETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChHHh-----CcCE-eCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 448999988752 2332 2368889999999655544 4899999998854
No 74
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=55.62 E-value=7 Score=33.91 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=23.8
Q ss_pred cCCccccccccccccCCCCCccccCCCCCCCc
Q 001369 34 LSGQTCQICEDEIEITDNGEPFVACNECAFPV 65 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~Fpv 65 (1091)
.-.-+|.-||.++.+... .-+-|.+|++.|
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~--~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAK--EVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCCSS--SCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecCCC--CceECCCCCcEE
Confidence 345699999999998853 338999999876
No 75
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=55.03 E-value=5.9 Score=36.57 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=34.4
Q ss_pred CccccccccccccCCCCCccccCCCCC-CCcchhhHHHHHhhcCCCCCCChhhhc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECA-FPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~-FpvCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
.-.|.||.+- +. ++.+. .|+ .-.||.|-+--.++ +..||.|++++.
T Consensus 22 ~~~CpI~~~~-m~----dPV~~--~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMSTL-MC----DPVVL--PSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCSB-CS----SEEEC--TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred hcCCcCcccc-cc----CCeEC--CCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 4589999753 33 24443 478 99999999777665 689999999884
No 76
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.68 E-value=4.3 Score=36.07 Aligned_cols=47 Identities=23% Similarity=0.737 Sum_probs=33.9
Q ss_pred ccccccccccccCCCCCccccCCCCCCCcchhhHHHH-HhhcCCCCCCChhhhc
Q 001369 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTRYK 89 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeye-rkeG~~~CPqCkt~Yk 89 (1091)
..|.||-+.|.. | ..|..|+-..=..|..-= +..++..||.|++...
T Consensus 16 ~~C~IC~~~i~~---g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSS---S---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHccc---C---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 489999999863 3 357677776667887432 4455689999998773
No 77
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.11 E-value=5.7 Score=37.29 Aligned_cols=45 Identities=24% Similarity=0.509 Sum_probs=32.8
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
.-.|.||-+... ++.+.. .|+--.|+.|..--.+ ..||.|++++.
T Consensus 22 ~~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 458999987652 344433 6899999999854333 78999999984
No 78
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=51.58 E-value=3.7 Score=35.36 Aligned_cols=48 Identities=31% Similarity=0.843 Sum_probs=33.9
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhh------cCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERRE------GNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerke------G~~~CPqCkt~Ykr 90 (1091)
...|.||-+...- +.+ . .|+--.|+.|.+--.+. +...||.|++++..
T Consensus 12 ~~~C~IC~~~~~~-----p~~-l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTE-----PLS-L-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSS-----CCC-C-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCC-----eeE-C-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4589999987521 222 2 68889999999643332 36899999999854
No 79
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=48.53 E-value=5.4 Score=37.35 Aligned_cols=55 Identities=25% Similarity=0.666 Sum_probs=39.6
Q ss_pred CCccccccccccccC-CCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 35 SGQTCQICEDEIEIT-DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~-~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
+...|.||-+..... .+|+..+.- .|+--.|+.|.+--.++ +..||.|++++...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHh-CCCCCCCCCcCccc
Confidence 345899999886543 245544544 78999999999655544 46999999998653
No 80
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=47.65 E-value=9.2 Score=40.93 Aligned_cols=48 Identities=21% Similarity=0.645 Sum_probs=38.6
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHH-HhhcCCCCCCChhhhc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTRYK 89 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeye-rkeG~~~CPqCkt~Yk 89 (1091)
-..|++|-+-|..+ +.|..|+-..=+.|++-- +..++..||.|++...
T Consensus 180 i~~C~iC~~iv~~g------~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQG------QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSC------EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCC------cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 45899999998853 789889999999999654 4446679999999873
No 81
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.90 E-value=19 Score=30.88 Aligned_cols=45 Identities=20% Similarity=0.612 Sum_probs=32.2
Q ss_pred cCCccccccccccccCCCCCccccCCCCCCC-cchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 34 LSGQTCQICEDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~Fp-vCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
.....|.||-+.. .--.|++| +=- .|..|.+ ..+.||-|+++...
T Consensus 13 ~~~~~C~IC~~~~----~~~v~~pC---gH~~~C~~C~~-----~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT----VNWVLLPC---RHTCLCDGCVK-----YFQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC----CCCEETTT---TBCCSCTTHHH-----HCSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCC----CCEEEECC---CChhhhHHHHh-----cCCCCCCCCcchhc
Confidence 3456899998752 22357777 433 7999996 25899999998754
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=45.78 E-value=7.5 Score=33.99 Aligned_cols=53 Identities=26% Similarity=0.617 Sum_probs=35.9
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhhHHHH---HhhcCCCCCCChhhhccc
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE---RREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeye---rkeG~~~CPqCkt~Ykr~ 91 (1091)
....|.+|+.. .+|+..+.|..|.--.=-.|.... ..+|.-.||.|...-++.
T Consensus 17 ~~~~C~~C~~~----~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKP----DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBC----CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCC----CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 34589999865 368889999988533333454332 224788999998876543
No 83
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.69 E-value=11 Score=30.89 Aligned_cols=45 Identities=24% Similarity=0.625 Sum_probs=31.8
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
...|.||-+..-. -... .|+--.|+.|.+- .+..||.|+++....
T Consensus 6 ~~~C~IC~~~~~~----p~~l---~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKC----PKLL---PCLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBC----CSCS---TTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCC----eEEc---CCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 4479999886431 1223 4677789999733 678999999988654
No 84
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=45.00 E-value=13 Score=34.87 Aligned_cols=54 Identities=22% Similarity=0.379 Sum_probs=35.8
Q ss_pred CCccccccccccccC----------CCCC-ccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhc
Q 001369 35 SGQTCQICEDEIEIT----------DNGE-PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~----------~~G~-~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
....|.||-+.+... ..|+ .-+.--.|+---++.|- .+--..+..||-|+..|+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci-~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCI-SRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHH-HHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHH-HHHHHcCCcCcCCCCcce
Confidence 456899998886643 1222 12222368889999998 443345799999999864
No 85
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=44.36 E-value=11 Score=43.28 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=33.4
Q ss_pred ccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhccc
Q 001369 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRL 91 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr~ 91 (1091)
..|.||-+..- + -...+ |+=-.|+.|..--.+.++..||-|+++....
T Consensus 333 ~~C~ICle~~~---~-pv~lp---CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDK---D-VKIEP---CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBC---C-EEEET---TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCC---C-eEEeC---CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 68999977641 1 12444 4555699999554554789999999988653
No 86
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.66 E-value=14 Score=31.97 Aligned_cols=43 Identities=33% Similarity=0.711 Sum_probs=30.1
Q ss_pred CccccccccccccCCCCCccccCCCCCCC-cchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~Fp-vCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
...|.||-+..- .-.+++| +-- .|+.|.+ ....||-|+++...
T Consensus 25 ~~~C~IC~~~~~----~~~~~pC---gH~~~C~~C~~-----~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVPC---GHLVTCKQCAE-----AVDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSSS---CCCCBCHHHHH-----HCSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC----CEEEecC---CCHHHHHHHhh-----CCCCCccCCceecC
Confidence 348999987631 1235554 666 7999983 34899999998754
No 87
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.94 E-value=32 Score=27.40 Aligned_cols=42 Identities=21% Similarity=0.722 Sum_probs=30.1
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhh--cCCCCCCC
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERRE--GNQACPQC 84 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerke--G~~~CPqC 84 (1091)
...|.||-+..... ... .|+--.|+.|.+--.++ ++..||.|
T Consensus 15 ~~~C~IC~~~~~~p----~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEP----VII---ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSC----CCC---SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCcc----EeC---CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45899999885321 222 57888899999665443 77899988
No 88
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=42.61 E-value=9.9 Score=46.43 Aligned_cols=54 Identities=37% Similarity=0.947 Sum_probs=40.9
Q ss_pred CCccccccccccccCCC---CCccccCCCCC--------------------CCcchhhH-HHH----Hh--hcCCCCCCC
Q 001369 35 SGQTCQICEDEIEITDN---GEPFVACNECA--------------------FPVCRPCY-EYE----RR--EGNQACPQC 84 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~---G~~fvaC~eC~--------------------FpvCrpCy-eye----rk--eG~~~CPqC 84 (1091)
.-.+|.-|=.++---.| +-+|+-|..|| ||.|..|. ||+ || ----+||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 45599999999753332 56899999994 99999997 565 44 122599999
Q ss_pred hhhh
Q 001369 85 KTRY 88 (1091)
Q Consensus 85 kt~Y 88 (1091)
+=++
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 9887
No 89
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=42.31 E-value=9.9 Score=47.29 Aligned_cols=58 Identities=38% Similarity=0.825 Sum_probs=42.5
Q ss_pred cCCccccccccccccCCC---CCccccCCCCC--------------------CCcchhhH-HHH----Hh--hcCCCCCC
Q 001369 34 LSGQTCQICEDEIEITDN---GEPFVACNECA--------------------FPVCRPCY-EYE----RR--EGNQACPQ 83 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~---G~~fvaC~eC~--------------------FpvCrpCy-eye----rk--eG~~~CPq 83 (1091)
..-.+|.-|=.++---.| +-+|+-|..|| ||.|..|. ||+ || ----+||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 455689999988754332 56899999995 99999996 455 33 11249999
Q ss_pred Chhhhccc
Q 001369 84 CKTRYKRL 91 (1091)
Q Consensus 84 Ckt~Ykr~ 91 (1091)
|+=++.-.
T Consensus 184 CGP~l~l~ 191 (772)
T 4g9i_A 184 CGPSYRLY 191 (772)
T ss_dssp TSCCEEEE
T ss_pred CCceEEEE
Confidence 99887544
No 90
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=41.46 E-value=9.7 Score=32.17 Aligned_cols=47 Identities=21% Similarity=0.525 Sum_probs=32.8
Q ss_pred CCccccccccccccCCCCCccc--cCCCCCCC-cchhhHHHHHhhcCCCCCCChhhhc
Q 001369 35 SGQTCQICEDEIEITDNGEPFV--ACNECAFP-VCRPCYEYERREGNQACPQCKTRYK 89 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fv--aC~eC~Fp-vCrpCyeyerkeG~~~CPqCkt~Yk 89 (1091)
....|.||-|+..- -.|+ +| |-- .|..|.+--. +.+..||-|+++..
T Consensus 7 ~~~~C~IC~~~~~~----~~~~~~pC---gH~~~C~~C~~~~~-~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN----GCIVHGKT---GHLMACFTCAKKLK-KRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC----EEEEETTE---EEEEECHHHHHHHH-HTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC----EEEECCCC---CChhhHHHHHHHHH-HcCCcCCCcCcchh
Confidence 45589999886321 1455 55 655 6999997554 45688999998874
No 91
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=41.10 E-value=7.5 Score=38.14 Aligned_cols=46 Identities=22% Similarity=0.580 Sum_probs=36.3
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhh
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Y 88 (1091)
.-.|.||.+-+- ++ |.. .|+=-.|+.|.+--.+.++..||.|+++.
T Consensus 31 ~~~C~IC~~~~~-----~p-v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVLR-----RP-FQA-QCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCCCCCChhhc-----Cc-EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 348999987642 23 334 89999999999887788888999999875
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=40.77 E-value=6.2 Score=33.93 Aligned_cols=58 Identities=22% Similarity=0.581 Sum_probs=38.6
Q ss_pred ccccCCccccccccccccCCCCCccccCCCCCCCcchhhHHH---HHhhcCCCCCCChhhhccccCCCC
Q 001369 31 VKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKTRYKRLKGSPR 96 (1091)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyey---erkeG~~~CPqCkt~Ykr~kg~pr 96 (1091)
++..+...|.+|++. | ..+.|..|.-..=..|+.- +.-+|.=.||.|...- ..++.+|
T Consensus 3 ~~~~~~~~C~vC~~~------g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~-~~~~~~~ 63 (66)
T 1xwh_A 3 MAQKNEDECAVCRDG------G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT-VQEVQPR 63 (66)
T ss_dssp CCCSCCCSBSSSSCC------S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC-CCCCCCC
T ss_pred cCCCCCCCCccCCCC------C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc-cccCccc
Confidence 344567799999973 3 5788999876655677751 2346888999997542 3334444
No 93
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=40.07 E-value=12 Score=42.42 Aligned_cols=35 Identities=20% Similarity=0.551 Sum_probs=29.0
Q ss_pred cCCcccccccccc-ccCCCCCccccCCCCCCCcchhhHH
Q 001369 34 LSGQTCQICEDEI-EITDNGEPFVACNECAFPVCRPCYE 71 (1091)
Q Consensus 34 ~~~~~C~iCgd~v-g~~~~G~~fvaC~eC~FpvCrpCye 71 (1091)
.....|..|+..+ |+...| ..|..|++.||+.|..
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg---~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQG---YRCYRCRAPAHKECLG 390 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCE---EEETTTCCEECGGGGG
T ss_pred CCCCCCccccchhceeCCCC---CCCCCCcCccchhhhh
Confidence 3556999999997 676666 5699999999999984
No 94
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=39.01 E-value=3.2 Score=39.73 Aligned_cols=30 Identities=13% Similarity=0.574 Sum_probs=19.3
Q ss_pred cccCCCCCCCcchhhHHHHHhhcCC-CCCCChhhhccc
Q 001369 55 FVACNECAFPVCRPCYEYERREGNQ-ACPQCKTRYKRL 91 (1091)
Q Consensus 55 fvaC~eC~FpvCrpCyeyerkeG~~-~CPqCkt~Ykr~ 91 (1091)
..-|.+|++. ++..+-.. .||.|+.+-.+.
T Consensus 73 ~~~C~~CG~~-------~e~~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 73 ELECKDCSHV-------FKPNALDYGVCEKCHSKNVII 103 (119)
T ss_dssp EEECSSSSCE-------ECSCCSTTCCCSSSSSCCCEE
T ss_pred eEEcCCCCCE-------EeCCCCCCCcCccccCCCcEE
Confidence 4557777643 22234456 899999987665
No 95
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=37.96 E-value=14 Score=44.13 Aligned_cols=36 Identities=17% Similarity=0.477 Sum_probs=30.2
Q ss_pred cCCcccccccccc-ccCCCCCccccCCCCCCCcchhhHHH
Q 001369 34 LSGQTCQICEDEI-EITDNGEPFVACNECAFPVCRPCYEY 72 (1091)
Q Consensus 34 ~~~~~C~iCgd~v-g~~~~G~~fvaC~eC~FpvCrpCyey 72 (1091)
.....|..|++-+ |+...| ..|..|+|.||+-|.+.
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg---~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQG---YRCHRCRASAHKECLGR 563 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCE---EEETTTCCEECSGGGGG
T ss_pred CCCcccccccccccccccCC---cCCCCCCCccchhhhhc
Confidence 3456999999997 877666 78999999999999954
No 96
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=37.75 E-value=14 Score=32.56 Aligned_cols=26 Identities=19% Similarity=0.703 Sum_probs=17.1
Q ss_pred ccccccccccccCCCCCccccCCCCCCC
Q 001369 37 QTCQICEDEIEITDNGEPFVACNECAFP 64 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~Fp 64 (1091)
-+|.-||.++.+.. ++ -+.|.+|+..
T Consensus 29 Y~C~~CG~~~e~~~-~d-~irCp~CG~R 54 (70)
T 1twf_L 29 YICAECSSKLSLSR-TD-AVRCKDCGHR 54 (70)
T ss_dssp EECSSSCCEECCCT-TS-TTCCSSSCCC
T ss_pred EECCCCCCcceeCC-CC-CccCCCCCce
Confidence 47888888877763 22 2467777763
No 97
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=37.57 E-value=7.2 Score=34.32 Aligned_cols=57 Identities=25% Similarity=0.536 Sum_probs=42.0
Q ss_pred ccccccCCccccccccccccCCCCCccccCCCCCCCcchhhHHHH-HhhcCCCCCCChhh
Q 001369 29 KSVKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTR 87 (1091)
Q Consensus 29 ~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeye-rkeG~~~CPqCkt~ 87 (1091)
-|....+...|.||++. -..+++..+-|..|.-.+=..||.-. .-+|.=.||.|...
T Consensus 9 ~~~~~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 9 MQSLIDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp -CCCCCSSCSCSSSCCC--CCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred cccCCCCCCCCCCCCCC--CCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34445567799999874 23456788999999888888888643 34788999999764
No 98
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=37.41 E-value=2 Score=37.98 Aligned_cols=40 Identities=23% Similarity=0.491 Sum_probs=29.6
Q ss_pred CcchhhHHHHHhhcCCCCCCChhhhccccCCCCcCCCCCc
Q 001369 64 PVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEE 103 (1091)
Q Consensus 64 pvCrpCyeyerkeG~~~CPqCkt~Ykr~kg~prv~gd~ee 103 (1091)
|+|+.=.+|++.+|.-.|+.|+..|--..|=|..--||..
T Consensus 12 P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear 51 (70)
T 2js4_A 12 PVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAEAR 51 (70)
T ss_dssp TTTCCBEEEETTTTEEEETTTTEEEEEETTEECCCGGGSE
T ss_pred CCCCCcCEEeCCCCEEEcCCCCceecCCCCeeeeChhhcc
Confidence 4444444455567888999999999999999977766543
No 99
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.19 E-value=24 Score=33.36 Aligned_cols=23 Identities=30% Similarity=0.209 Sum_probs=16.1
Q ss_pred CcchhhHHHHHhhcC-CCCCCChhhh
Q 001369 64 PVCRPCYEYERREGN-QACPQCKTRY 88 (1091)
Q Consensus 64 pvCrpCyeyerkeG~-~~CPqCkt~Y 88 (1091)
|.|+.||+ ++-+. ..|-.|+.+-
T Consensus 56 ~yC~~cy~--~~f~~~~~C~~C~~~I 79 (122)
T 1m3v_A 56 ILCRNDYI--RLFGNSGAGGSGGHMG 79 (122)
T ss_dssp EECHHHHH--HHHCCCCSSSCSSCCS
T ss_pred eecHHHHH--HHcCCCCccccCCCCc
Confidence 45999984 33443 3899998866
No 100
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=35.66 E-value=3 Score=36.55 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=25.2
Q ss_pred HHHhhcCCCCCCChhhhccccCCCCcCCCCCc
Q 001369 72 YERREGNQACPQCKTRYKRLKGSPRVEGDEEE 103 (1091)
Q Consensus 72 yerkeG~~~CPqCkt~Ykr~kg~prv~gd~ee 103 (1091)
|...+|.-.|+.|+..|--..|=|..--||..
T Consensus 22 ~~~~~g~LvC~~c~~~YPI~dGIPvmL~~Ear 53 (67)
T 2jny_A 22 YLESEQLLVNERLNLAYRIDDGIPVLLIDEAT 53 (67)
T ss_dssp EETTTTEEEETTTTEEEEEETTEECCCSSCCE
T ss_pred EeCCCCEEEcCCCCccccCCCCEeeeChhHhc
Confidence 33456778999999999999999987777543
No 101
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=35.52 E-value=18 Score=34.21 Aligned_cols=46 Identities=22% Similarity=0.530 Sum_probs=26.7
Q ss_pred ccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcC-CCCCCChhhh
Q 001369 37 QTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCKTRY 88 (1091)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~-~~CPqCkt~Y 88 (1091)
-.|..|+..+. +.|..|+. .=+-|.|++||. + +-+. ..|..|+++-
T Consensus 30 F~C~~C~~~L~--~~~~~~~~--~~g~~yC~~~y~-~-~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 30 LSCDLCGCRLG--EVGRRLYY--KLGRKLCRRDYL-R-LFGQDGLCASCDKRI 76 (131)
T ss_dssp CBCTTTCCBCS--STTCCEEE--ETTEEECHHHHH-H-HHCCCEECTTTCCEE
T ss_pred cccCcCCCccc--cCCCeEEE--ECCEEeecCchh-h-hCCCccChhhcCCcc
Confidence 36777777653 22322222 113468999994 2 2332 4899999876
No 102
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=35.48 E-value=8.9 Score=34.99 Aligned_cols=54 Identities=26% Similarity=0.581 Sum_probs=40.7
Q ss_pred ccCCccccccccccccCCCCCccccCCCCCCCcchhhHHHH-HhhcCCCCCCChhhh
Q 001369 33 ELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTRY 88 (1091)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeye-rkeG~~~CPqCkt~Y 88 (1091)
..+...|.+|++. -..+++..+-|..|.-.+=..||.-. .-+|.=.||.|...-
T Consensus 22 ~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 3466799999964 22456789999999887778888543 447899999997653
No 103
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=34.42 E-value=4.9 Score=39.70 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=10.3
Q ss_pred CCCCCCChhhhccc
Q 001369 78 NQACPQCKTRYKRL 91 (1091)
Q Consensus 78 ~~~CPqCkt~Ykr~ 91 (1091)
...||.|+.+--..
T Consensus 107 ~~~CP~Cgs~~~~i 120 (139)
T 3a43_A 107 FLACPKCGSHDFEV 120 (139)
T ss_dssp GCSCSSSSCCCEEE
T ss_pred CCcCccccCCccEE
Confidence 57899998875443
No 104
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.21 E-value=22 Score=31.24 Aligned_cols=61 Identities=20% Similarity=0.495 Sum_probs=32.8
Q ss_pred ccccCCcccccccccccc----CCCCCcc----ccCCCCCCCcchhhHHHH-HhhcCCCCCCChhhhccccCCC
Q 001369 31 VKELSGQTCQICEDEIEI----TDNGEPF----VACNECAFPVCRPCYEYE-RREGNQACPQCKTRYKRLKGSP 95 (1091)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~----~~~G~~f----vaC~eC~FpvCrpCyeye-rkeG~~~CPqCkt~Ykr~kg~p 95 (1091)
.+......|..|+..|.. .+.|..+ ..|.+|+=+.=.-.| ++ .+||. +=|+.-|.+...+|
T Consensus 10 ~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~-~~~~~~g~---~yC~~~y~~~~~~~ 79 (82)
T 2co8_A 10 QEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGY-EQHPGDGH---FYCLQHLPQTDSGP 79 (82)
T ss_dssp CCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSE-ECCTTTCC---CEETTTCCCCCCCC
T ss_pred cCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCce-eEeCcCCE---EEChHHHHhhhcCC
Confidence 334456799999999853 3456554 235555544433333 11 14554 34556666665554
No 105
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.57 E-value=18 Score=32.41 Aligned_cols=49 Identities=24% Similarity=0.610 Sum_probs=34.2
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHH----HhhcC---CCCCC--Chhhh
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE----RREGN---QACPQ--CKTRY 88 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeye----rkeG~---~~CPq--Ckt~Y 88 (1091)
...|.||-+++. +..++.-..|+=.-|+.|..-- .++|. -.||+ |+..+
T Consensus 5 ~~~C~IC~~~~~----~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 5 SSGCKLCLGEYP----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp BCCCSSSCCCCB----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CcCCcccCcccc----cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 458999988753 3344444457889999997544 24664 47999 99874
No 106
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=33.15 E-value=14 Score=30.59 Aligned_cols=31 Identities=29% Similarity=0.803 Sum_probs=25.7
Q ss_pred CccccccccccccCCCCCccccCCCC-CCCcchhhHHH
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNEC-AFPVCRPCYEY 72 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC-~FpvCrpCyey 72 (1091)
+..|..|+.+|| .-.-|.+| .|-+|..||.-
T Consensus 6 ~~~Cd~C~~~ig------~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 6 VYTCNECKHHVE------TRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEES------SEEEESSSSSCEECHHHHHH
T ss_pred EEECCCCCCCCc------ceEEcCCCCCchhHHHHHhC
Confidence 458999999863 45889999 89999999964
No 107
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=31.48 E-value=9.3 Score=46.45 Aligned_cols=45 Identities=11% Similarity=-0.011 Sum_probs=18.1
Q ss_pred cccccc-ccccc--CCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhh
Q 001369 38 TCQICE-DEIEI--TDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1091)
Q Consensus 38 ~C~iCg-d~vg~--~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~ 87 (1091)
.|..|| .++-. ...|..|..| |+||-|+.-.-. +.....||+ +.+
T Consensus 574 ~CP~Cg~g~l~~r~~k~G~~f~gC--s~yp~C~f~~~~--~p~~~~Cp~-~~~ 621 (633)
T 2gai_A 574 FYLKCECGKTRSVKNDEIAVIDDG--KIFLGRKDSESG--SPDGRSVEG-KGN 621 (633)
T ss_dssp EEEECSSSCCEECCTTSBCEEETT--EEEC-----------------------
T ss_pred cCcccCCCcceeecccCCCeEEeC--CCCcCCCCeecC--CccCCcCCC-CCe
Confidence 499998 66444 2467789999 566666544311 223478998 643
No 108
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.05 E-value=28 Score=31.44 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=33.1
Q ss_pred CccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhc-----CCCCCC--Chhh
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREG-----NQACPQ--CKTR 87 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG-----~~~CPq--Ckt~ 87 (1091)
.-+|.||.+- +. ++.+.- .||.-.||.|-+--.+++ ...||. |+..
T Consensus 7 ~~~CPI~~~~-~~----dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEE-MK----KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSB-CS----SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCch-hc----CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3489999854 33 365543 689999999987665543 468999 8876
No 109
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=30.20 E-value=30 Score=32.56 Aligned_cols=51 Identities=22% Similarity=0.536 Sum_probs=39.0
Q ss_pred Cccccccccccc--cCCCCCccccCCCCCCCcchhhHHH------HHhhcCCCCCCChh
Q 001369 36 GQTCQICEDEIE--ITDNGEPFVACNECAFPVCRPCYEY------ERREGNQACPQCKT 86 (1091)
Q Consensus 36 ~~~C~iCgd~vg--~~~~G~~fvaC~eC~FpvCrpCyey------erkeG~~~CPqCkt 86 (1091)
..+|.+|...=. .+.+++.++.|..|+-..=..|.++ ..++++=.||.||+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 458999976533 3356778999999988877788853 35688999999984
No 110
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.76 E-value=2.4 Score=37.27 Aligned_cols=40 Identities=15% Similarity=0.404 Sum_probs=28.8
Q ss_pred CcchhhHHHHHhhcCCCCCCChhhhccccCCCCcCCCCCc
Q 001369 64 PVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEE 103 (1091)
Q Consensus 64 pvCrpCyeyerkeG~~~CPqCkt~Ykr~kg~prv~gd~ee 103 (1091)
|+|+-=.+|++.+|.-.||.|+..|--..|=|..--||..
T Consensus 12 P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear 51 (68)
T 2hf1_A 12 PLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEAR 51 (68)
T ss_dssp TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCGGGCE
T ss_pred CCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeChhhcc
Confidence 4444334455557888999999999999999877666533
No 111
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.43 E-value=27 Score=30.58 Aligned_cols=37 Identities=22% Similarity=0.508 Sum_probs=23.9
Q ss_pred ccccccCCcccccccccccc----CCCCCcc----ccCCCCCCCc
Q 001369 29 KSVKELSGQTCQICEDEIEI----TDNGEPF----VACNECAFPV 65 (1091)
Q Consensus 29 ~~~~~~~~~~C~iCgd~vg~----~~~G~~f----vaC~eC~Fpv 65 (1091)
+|.+......|..|+..|.. .+.|..+ ..|.+|.-++
T Consensus 8 ~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L 52 (80)
T 2dj7_A 8 KPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVIL 52 (80)
T ss_dssp CCCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBC
T ss_pred CCcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCc
Confidence 55555667799999998863 2345443 3577786554
No 112
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=27.69 E-value=23 Score=29.75 Aligned_cols=47 Identities=19% Similarity=0.536 Sum_probs=31.9
Q ss_pred CccccccccccccCCCCCccc--cCCCCCCC-cchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFV--ACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fv--aC~eC~Fp-vCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
...|.||-|.-- .-.++ +| |-- .|..|.+--.+ .+..||-|..+.+.
T Consensus 7 ~~~C~IC~~~~~----~~~~~~~pC---gH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPR----DGNIIHGRT---GHLVTCFHCARRLKK-AGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBS----CEEEEETTE---EEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCC----CeEEEecCC---CCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence 458999988521 11244 66 544 79999975544 45899999988743
No 113
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.47 E-value=49 Score=29.57 Aligned_cols=36 Identities=17% Similarity=0.496 Sum_probs=20.6
Q ss_pred ccccCCccccccccccccCCCCCccccCCCCCCCcchhh
Q 001369 31 VKELSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPC 69 (1091)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpC 69 (1091)
+.......|.+|+..-++..+ ---|.-||--+|..|
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~R---rHHCR~CG~vfC~~C 44 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKK---RRSCSNCGNSFCSRC 44 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSC---CEECSSSCCEECTTT
T ss_pred ccCCCCCcCcCcCCccccchh---hhhhcCCCcEEChhh
Confidence 344456689999998766532 123444444444444
No 114
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.46 E-value=77 Score=28.08 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=21.1
Q ss_pred ccccccCCcccccccccccc----CCCCCcc----ccCCCCC
Q 001369 29 KSVKELSGQTCQICEDEIEI----TDNGEPF----VACNECA 62 (1091)
Q Consensus 29 ~~~~~~~~~~C~iCgd~vg~----~~~G~~f----vaC~eC~ 62 (1091)
++.+......|..|+..|.- .+.|..+ ..|.+|.
T Consensus 8 ~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~ 49 (91)
T 2d8y_A 8 MKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCN 49 (91)
T ss_dssp SCSCSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTC
T ss_pred CccCCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCC
Confidence 34444567799999998853 3456553 2466664
No 115
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.11 E-value=20 Score=39.10 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=36.4
Q ss_pred cCCccccccccccccCCCCCccccCCCCCCCcchhhHHHHHhh-cCCCCCC--Chhhhcc
Q 001369 34 LSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERRE-GNQACPQ--CKTRYKR 90 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerke-G~~~CPq--Ckt~Ykr 90 (1091)
...-+|.||.+-. -++.+ ...||---||.|.+--.++ |...||. |+.++..
T Consensus 179 ~~el~CPIcl~~f-----~DPVt-s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPY-----EAPLI-SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBC-----SSEEE-ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcc-----cCCee-eCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3445899999875 12332 3468888999999766554 5568999 9998743
No 116
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=26.42 E-value=32 Score=34.84 Aligned_cols=23 Identities=39% Similarity=0.713 Sum_probs=16.2
Q ss_pred CcchhhHHHHHhhcCC-CCCCChhhh
Q 001369 64 PVCRPCYEYERREGNQ-ACPQCKTRY 88 (1091)
Q Consensus 64 pvCrpCyeyerkeG~~-~CPqCkt~Y 88 (1091)
+.|+.||. ++-+.+ .|..|+++-
T Consensus 56 ~yC~~cy~--~~~~~~~~C~~C~~~I 79 (188)
T 1rut_X 56 ILCRNDYI--RLFGNSGACSACGQSI 79 (188)
T ss_dssp EECHHHHH--HHHSCCEECTTTCCEE
T ss_pred cccccccc--cccccCCccccCCCcc
Confidence 56999983 334444 799999865
No 117
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=26.33 E-value=16 Score=35.10 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=0.8
Q ss_pred CCccccccccccccCC-----------CCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 35 SGQTCQICEDEIEITD-----------NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~-----------~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
....|.||-+++.... .++.-+.--.|+---|+.|-. +--..+..||-|+.+++-
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~-~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS-RWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHH-HHHHcCCcCCCCCCeeee
Confidence 3468999999876421 222233333678888999974 322337899999998643
No 118
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=26.24 E-value=3 Score=30.24 Aligned_cols=23 Identities=35% Similarity=0.688 Sum_probs=13.7
Q ss_pred CCCcchhhHHHHHhhcCCCCCCChh
Q 001369 62 AFPVCRPCYEYERREGNQACPQCKT 86 (1091)
Q Consensus 62 ~FpvCrpCyeyerkeG~~~CPqCkt 86 (1091)
.|||||+|+-=-++ .++...|++
T Consensus 3 ~~~iC~~CC~cc~~--~~CG~cC~~ 25 (26)
T 1m4f_A 3 HFPICIFCCGCCHR--SKCGMCCKT 25 (26)
T ss_dssp SSCCCEEEECSSSS--SSEEEECCC
T ss_pred cCCccceecccCCC--CCcCCeeCC
Confidence 59999999922222 344444544
No 119
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.72 E-value=21 Score=29.43 Aligned_cols=15 Identities=27% Similarity=1.046 Sum_probs=13.1
Q ss_pred cCCCCCCChhhhccc
Q 001369 77 GNQACPQCKTRYKRL 91 (1091)
Q Consensus 77 G~~~CPqCkt~Ykr~ 91 (1091)
|...||+|+..|+..
T Consensus 11 ~~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 11 GRKICPRCNAQFRVT 25 (49)
T ss_dssp SCCCCTTTCCCCSSH
T ss_pred CceeCCcccccccch
Confidence 678999999999765
No 120
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=25.28 E-value=24 Score=29.85 Aligned_cols=46 Identities=24% Similarity=0.741 Sum_probs=34.7
Q ss_pred cCCccccccccccccCCCCCccccCCCCCCCcchhhHHH---HHhhcCCCCCCChh
Q 001369 34 LSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKT 86 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyey---erkeG~~~CPqCkt 86 (1091)
.+...|.+|++ |...+.|..|.-..=-.|..- +.-+|.=.||.|..
T Consensus 9 ~~~~~C~vC~~-------~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQ-------GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSC-------CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCC-------CCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 45669999997 246788999977666777764 24478899999975
No 121
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=24.79 E-value=29 Score=31.23 Aligned_cols=23 Identities=22% Similarity=0.603 Sum_probs=15.8
Q ss_pred CCcchhhHHHHHhhcCCCCCCChhhh
Q 001369 63 FPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 63 FpvCrpCyeyerkeG~~~CPqCkt~Y 88 (1091)
-+.|++||+ ++- ...|.+|+++-
T Consensus 54 ~~yC~~cy~--~~~-~~~C~~C~~~I 76 (101)
T 2cup_A 54 KILCNKCTT--RED-SPKCKGCFKAI 76 (101)
T ss_dssp EEECHHHHT--TCC-CCBCSSSCCBC
T ss_pred EEEChhHhh--hhc-CCccccCCCcc
Confidence 366999983 223 36899998765
No 122
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.69 E-value=17 Score=34.59 Aligned_cols=26 Identities=27% Similarity=0.740 Sum_probs=18.4
Q ss_pred ccCCCCCCCcchhhHHHHHhhcCCCCCCChhh
Q 001369 56 VACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1091)
Q Consensus 56 vaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~ 87 (1091)
..|..|||-.+ ++-.....||.||..
T Consensus 68 ~~C~~CG~~F~------~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 68 AQCRKCGFVFK------AEINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCBCC------CCSSCCSSCSSSCCC
T ss_pred cChhhCcCeec------ccCCCCCCCcCCCCC
Confidence 46999998871 233455789999864
No 123
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=24.69 E-value=26 Score=35.38 Aligned_cols=35 Identities=29% Similarity=0.567 Sum_probs=24.9
Q ss_pred ccccccc-cccc----cCCCCC-ccccCCCCCCCcchhhHH
Q 001369 37 QTCQICE-DEIE----ITDNGE-PFVACNECAFPVCRPCYE 71 (1091)
Q Consensus 37 ~~C~iCg-d~vg----~~~~G~-~fvaC~eC~FpvCrpCye 71 (1091)
.+|..|| .+.- +..+|+ .++--+|=--|+||-||.
T Consensus 138 ~ic~~cg~~~a~~~~r~~~~~~~~~ig~~~~Y~~~cr~~~~ 178 (184)
T 2orw_A 138 AVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYN 178 (184)
T ss_dssp BCCTTTCCSCBCEEEECSSCSCSCCCCSTTTEEEECHHHHH
T ss_pred eecCCCCCeeceeEEEEcCCCCEEEECCCCcEEEccHHHHh
Confidence 4899999 5522 234555 366777888899999994
No 124
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=24.64 E-value=73 Score=31.98 Aligned_cols=52 Identities=21% Similarity=0.569 Sum_probs=32.5
Q ss_pred cCCcccccccccccc----CCCCCcc----ccCCCCCCC------------cchhhHHHHHhhcCCCCCCChhhh
Q 001369 34 LSGQTCQICEDEIEI----TDNGEPF----VACNECAFP------------VCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~----~~~G~~f----vaC~eC~Fp------------vCrpCyeyerkeG~~~CPqCkt~Y 88 (1091)
....+|..|+..|.- .+.|..+ ..|.+|.=| .|+.||. ++-+ ..|..|+++-
T Consensus 58 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~--~~f~-~kC~~C~~~I 129 (182)
T 2jtn_A 58 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFF--KRFG-TKCAACQLGI 129 (182)
T ss_dssp CSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHH--HTTS-CCCTTTCCCC
T ss_pred CCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCceeECCEeeecCccc--cccc-cccccCCCcc
Confidence 345699999998763 2345443 357777554 4888873 2233 5777777643
No 125
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=24.62 E-value=22 Score=37.06 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=24.3
Q ss_pred ccccccccccc----cCCCCCc-cccCCCCCCCcchhhHH
Q 001369 37 QTCQICEDEIE----ITDNGEP-FVACNECAFPVCRPCYE 71 (1091)
Q Consensus 37 ~~C~iCgd~vg----~~~~G~~-fvaC~eC~FpvCrpCye 71 (1091)
.+|..||.+-- ++++|+. .|-=+|=-.|+||-||.
T Consensus 152 aiC~~Cg~~A~~~~R~~~~~~~i~IGg~e~Y~~~CR~c~~ 191 (195)
T 1w4r_A 152 AVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYF 191 (195)
T ss_dssp EECTTTCSEECEEEESSCCCSSCCCCCTTTEEEECHHHHT
T ss_pred eEecccCCeeeeEEEEcCCCCEEEECCCCcEEEccHHHhh
Confidence 48999998732 2335553 45555777899999993
No 126
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=24.32 E-value=22 Score=30.62 Aligned_cols=43 Identities=33% Similarity=0.690 Sum_probs=30.1
Q ss_pred CccccccccccccCCCCCccccCCCCCCC-cchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~Fp-vCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
...|.||-+..- --.+.+| +=- .|+.|..- -..||-|++++..
T Consensus 24 ~~~C~iC~~~~~----~~~~~pC---gH~~~C~~C~~~-----~~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNI----AIVFVPC---GHLVTCKQCAEA-----VDKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBC----CEEEETT---CCBCCCHHHHTT-----CSBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC----CEEEcCC---CChhHHHHhhhc-----CccCCCcCcCccC
Confidence 348999987632 1235554 667 89999742 2899999998754
No 127
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=24.08 E-value=52 Score=27.74 Aligned_cols=24 Identities=29% Similarity=0.654 Sum_probs=12.1
Q ss_pred ccccccc-ccccC-CCCCccccCCCCCC
Q 001369 38 TCQICED-EIEIT-DNGEPFVACNECAF 63 (1091)
Q Consensus 38 ~C~iCgd-~vg~~-~~G~~fvaC~eC~F 63 (1091)
.|..||. ++-.+ +.|+ +-|.+||+
T Consensus 13 ~Cp~C~~~~lv~D~~~ge--~vC~~CGl 38 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGD--MICPECGL 38 (58)
T ss_dssp SBTTBSSSCCEECSSSCC--EECTTTCC
T ss_pred cCcCCCCCceeEeCCCCe--EEeCCCCC
Confidence 6777765 34333 3455 33544443
No 128
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.95 E-value=4.4 Score=35.57 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=25.0
Q ss_pred HHHhhcCCCCCCChhhhccccCCCCcCCCCCc
Q 001369 72 YERREGNQACPQCKTRYKRLKGSPRVEGDEEE 103 (1091)
Q Consensus 72 yerkeG~~~CPqCkt~Ykr~kg~prv~gd~ee 103 (1091)
|++.+|.-.||.|+..|--..|=|..--||..
T Consensus 20 ~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear 51 (68)
T 2jr6_A 20 YHQDKQELWSRQAKLAYPIKDGIPYMLENEAR 51 (68)
T ss_dssp EETTTTEEEETTTTEEEEEETTEECCCTTTCE
T ss_pred EeCCCCEEEcCCCCcEecCCCCeeeeChhhcc
Confidence 34456778999999999999999977776533
No 129
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.83 E-value=49 Score=28.73 Aligned_cols=36 Identities=22% Similarity=0.577 Sum_probs=22.4
Q ss_pred ccCCccccccccccc---cCCCCCcc----ccCCCCCCCcchh
Q 001369 33 ELSGQTCQICEDEIE---ITDNGEPF----VACNECAFPVCRP 68 (1091)
Q Consensus 33 ~~~~~~C~iCgd~vg---~~~~G~~f----vaC~eC~FpvCrp 68 (1091)
.....+|..|+..|. +.+.|..+ .-|.+|.-++=..
T Consensus 12 ~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~ 54 (79)
T 2cor_A 12 GLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTAD 54 (79)
T ss_dssp CCCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTT
T ss_pred ccCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCC
Confidence 445679999999876 22345443 3577776555444
No 130
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=23.31 E-value=34 Score=32.14 Aligned_cols=42 Identities=31% Similarity=0.808 Sum_probs=25.3
Q ss_pred cccccccccccCCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCChhhh
Q 001369 38 TCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1091)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeyerkeG~~~CPqCkt~Y 88 (1091)
.|..|+..+. |+.|+. .=+-|.|++||+ ++-+ ..|..|+++-
T Consensus 32 ~C~~C~~~L~----~~~f~~--~~g~~yC~~cy~--~~~~-~~C~~C~~~I 73 (126)
T 2xqn_T 32 CCFDCDSILA----GEIYVM--VNDKPVCKPCYV--KNHA-VVCQGCHNAI 73 (126)
T ss_dssp BCTTTCCBCT----TSEEEE--ETTEEEEHHHHH--HHSC-CBCTTTCSBC
T ss_pred CcCCCCCCCC----cCEEEe--ECCEEechHHhC--cCcC-ccCcccCCcC
Confidence 5666666543 223322 124578999994 2333 6899999875
No 131
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=22.55 E-value=35 Score=29.47 Aligned_cols=46 Identities=26% Similarity=0.622 Sum_probs=35.3
Q ss_pred cCCccccccccccccCCCCCccccCCCCCCCcchhhHHHH---HhhcCCCCCCChh
Q 001369 34 LSGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEYE---RREGNQACPQCKT 86 (1091)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyeye---rkeG~~~CPqCkt 86 (1091)
..+..|.+|++ |...+-|..|.-..=-.|..-- .-+|.=.||.|+.
T Consensus 10 ~~~~~C~vC~~-------~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGD-------GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CTTCCCTTTSC-------CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCCcCCCCC-------CCeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 35668999985 3347889999988888998533 3378899999974
No 132
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.13 E-value=67 Score=26.93 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=7.0
Q ss_pred CCcchhhHHH
Q 001369 63 FPVCRPCYEY 72 (1091)
Q Consensus 63 FpvCrpCyey 72 (1091)
-+.|++||+-
T Consensus 54 ~~yC~~cy~~ 63 (72)
T 1x61_A 54 RAYCEGCYVA 63 (72)
T ss_dssp CEEEHHHHHH
T ss_pred eEECHHHHHH
Confidence 4678888853
No 133
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=21.93 E-value=30 Score=35.69 Aligned_cols=53 Identities=26% Similarity=0.593 Sum_probs=35.5
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhhH---H--HHHh-----hcCCCCCCChhh
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCY---E--YERR-----EGNQACPQCKTR 87 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCy---e--yerk-----eG~~~CPqCkt~ 87 (1091)
+|+.|.+|+..-.-++.+...+.|..|..=+=..|- + +|.- +..=.||.|...
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 478999998765544445679999999866544443 2 3322 136799999764
No 134
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=21.51 E-value=3.7 Score=36.18 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=24.8
Q ss_pred HHHhhcCCCCCCChhhhccccCCCCcCCCCCc
Q 001369 72 YERREGNQACPQCKTRYKRLKGSPRVEGDEEE 103 (1091)
Q Consensus 72 yerkeG~~~CPqCkt~Ykr~kg~prv~gd~ee 103 (1091)
|++.+|.-.||.|+..|--..|=|..--||..
T Consensus 20 ~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ear 51 (69)
T 2pk7_A 20 LSADKTELISKGAGLAYPIRDGIPVMLESEAR 51 (69)
T ss_dssp ECTTSSEEEETTTTEEEEEETTEECCCGGGCE
T ss_pred EeCCCCEEEcCCCCcEecCcCCeeeeChhhcc
Confidence 33446778999999999999999977766543
No 135
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=21.16 E-value=25 Score=39.66 Aligned_cols=43 Identities=30% Similarity=0.753 Sum_probs=30.7
Q ss_pred CccccccccccccCCCCCccccCCCCCCC-cchhhHHHHHhhcCCCCCCChhhhcc
Q 001369 36 GQTCQICEDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1091)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~Fp-vCrpCyeyerkeG~~~CPqCkt~Ykr 90 (1091)
...|.||-+..- .-.+++ |+-- .|+.|..- -..||-|++++++
T Consensus 295 ~~~C~IC~~~~~----~~v~lp---CgH~~fC~~C~~~-----~~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFIP---CGHLVVCQECAPS-----LRKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC----CEEEET---TCCEEECTTTGGG-----CSBCTTTCCBCCE
T ss_pred CCCCCccCCcCC----ceEEcC---CCChhHhHHHHhc-----CCcCCCCCCCccC
Confidence 458999988742 123555 4666 89999852 2789999998864
No 136
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.27 E-value=39 Score=28.49 Aligned_cols=46 Identities=26% Similarity=0.731 Sum_probs=34.1
Q ss_pred CCccccccccccccCCCCCccccCCCCCCCcchhhHHH---HHhhcCCCCCCChhh
Q 001369 35 SGQTCQICEDEIEITDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKTR 87 (1091)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCrpCyey---erkeG~~~CPqCkt~ 87 (1091)
+...|.+|++ |...+-|..|.-..=..|..- +.-+|.=.||.|..+
T Consensus 8 ~~~~C~vC~~-------~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKD-------GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCC-------CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCC-------CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4668999996 345788999977766777752 234788899999753
Done!