Query 001371
Match_columns 1091
No_of_seqs 447 out of 3479
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 23:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0055 Multidrug/pheromone ex 100.0 3E-168 6E-173 1517.3 107.3 1020 43-1087 12-1032(1228)
2 KOG0054 Multidrug resistance-a 100.0 1E-137 2E-142 1282.8 102.2 959 65-1088 207-1183(1381)
3 PTZ00265 multidrug resistance 100.0 2E-127 5E-132 1251.3 125.9 1032 42-1088 43-1211(1466)
4 PLN03130 ABC transporter C fam 100.0 5E-118 1E-122 1174.2 118.8 965 61-1088 303-1282(1622)
5 PLN03232 ABC transporter C fam 100.0 3E-117 6E-122 1169.2 115.6 963 61-1088 303-1279(1495)
6 KOG0058 Peptide exporter, ABC 100.0 5E-116 1E-120 1008.4 67.9 576 44-626 133-708 (716)
7 TIGR00957 MRP_assoc_pro multi 100.0 1E-111 2E-116 1118.0 119.1 993 62-1088 320-1329(1522)
8 KOG0055 Multidrug/pheromone ex 100.0 4E-111 9E-116 1019.5 72.0 579 42-623 648-1226(1228)
9 TIGR01271 CFTR_protein cystic 100.0 3E-105 6E-110 1053.2 115.2 983 65-1088 86-1262(1490)
10 PTZ00243 ABC transporter; Prov 100.0 6E-104 1E-108 1039.9 115.5 975 61-1088 246-1353(1560)
11 COG2274 SunT ABC-type bacterio 100.0 2.3E-98 5E-103 902.9 72.1 570 43-622 139-708 (709)
12 PRK11174 cysteine/glutathione 100.0 5.8E-93 1.3E-97 872.9 74.9 569 45-624 9-586 (588)
13 COG1132 MdlB ABC-type multidru 100.0 1.1E-91 2.4E-96 856.3 75.1 562 46-623 4-565 (567)
14 PTZ00265 multidrug resistance 100.0 5.1E-92 1.1E-96 919.3 75.7 570 46-622 813-1465(1466)
15 TIGR00958 3a01208 Conjugate Tr 100.0 1.6E-90 3.4E-95 862.3 74.6 564 44-618 147-710 (711)
16 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6.4E-89 1.4E-93 849.4 76.5 564 44-622 121-685 (686)
17 TIGR01193 bacteriocin_ABC ABC- 100.0 1.8E-88 3.9E-93 848.4 75.1 565 44-620 142-707 (708)
18 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.7E-88 5.8E-93 847.9 75.1 564 45-619 141-709 (710)
19 KOG0056 Heavy metal exporter H 100.0 1.3E-91 2.7E-96 756.7 38.7 557 63-627 219-779 (790)
20 PRK11160 cysteine/glutathione 100.0 7.6E-88 1.7E-92 820.5 75.4 566 46-620 4-572 (574)
21 TIGR03375 type_I_sec_LssB type 100.0 1.3E-87 2.7E-92 838.9 73.6 557 44-610 133-689 (694)
22 COG4988 CydD ABC-type transpor 100.0 3.8E-87 8.3E-92 756.9 70.0 552 64-624 5-557 (559)
23 PRK11176 lipid transporter ATP 100.0 1.2E-86 2.7E-91 816.4 76.0 567 46-623 13-580 (582)
24 PRK10790 putative multidrug tr 100.0 1.3E-85 2.9E-90 807.6 76.6 567 46-625 11-578 (592)
25 KOG0057 Mitochondrial Fe/S clu 100.0 1.6E-86 3.4E-91 737.3 60.6 570 46-623 13-587 (591)
26 TIGR01846 type_I_sec_HlyB type 100.0 2.8E-85 6.1E-90 816.9 76.1 568 44-622 125-692 (694)
27 TIGR02203 MsbA_lipidA lipid A 100.0 9.5E-85 2.1E-89 799.1 75.6 565 47-622 3-568 (571)
28 TIGR02868 CydC thiol reductant 100.0 1.2E-84 2.5E-89 789.3 69.2 526 47-581 2-529 (529)
29 PRK13657 cyclic beta-1,2-gluca 100.0 6.3E-84 1.4E-88 791.5 76.2 566 45-623 6-571 (588)
30 TIGR00957 MRP_assoc_pro multi 100.0 2.4E-84 5.1E-89 857.7 74.0 567 44-621 950-1519(1522)
31 TIGR01192 chvA glucan exporter 100.0 2.7E-83 5.9E-88 781.3 75.9 564 46-622 7-570 (585)
32 TIGR02204 MsbA_rel ABC transpo 100.0 2.7E-83 6E-88 786.5 75.6 570 46-622 6-575 (576)
33 PRK10789 putative multidrug tr 100.0 2.1E-83 4.5E-88 781.5 73.7 544 72-624 8-552 (569)
34 PLN03130 ABC transporter C fam 100.0 2.1E-83 4.6E-88 846.2 74.8 569 43-624 898-1476(1622)
35 COG4987 CydC ABC-type transpor 100.0 1.1E-82 2.4E-87 706.5 64.8 554 58-620 15-571 (573)
36 PLN03232 ABC transporter C fam 100.0 5.8E-82 1.3E-86 833.8 72.6 513 105-624 952-1473(1495)
37 PTZ00243 ABC transporter; Prov 100.0 1.4E-81 3E-86 828.2 75.5 507 114-623 1009-1547(1560)
38 TIGR02857 CydD thiol reductant 100.0 2.4E-81 5.3E-86 760.3 70.8 524 61-593 5-529 (529)
39 COG5265 ATM1 ABC-type transpor 100.0 1.8E-83 3.9E-88 689.7 41.8 490 126-620 5-496 (497)
40 KOG0054 Multidrug resistance-a 100.0 8.9E-82 1.9E-86 783.5 61.7 572 40-621 797-1374(1381)
41 TIGR01842 type_I_sec_PrtD type 100.0 1.5E-79 3.3E-84 745.1 73.1 534 61-610 8-543 (544)
42 TIGR01271 CFTR_protein cystic 100.0 1.3E-77 2.9E-82 790.8 72.6 504 112-625 934-1455(1490)
43 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.5E-75 7.5E-80 706.6 68.1 534 45-601 4-551 (555)
44 COG4618 ArpD ABC-type protease 100.0 7.4E-72 1.6E-76 613.5 52.9 533 63-610 28-561 (580)
45 PRK10522 multidrug transporter 100.0 8.5E-70 1.8E-74 659.7 67.2 526 51-608 6-538 (547)
46 TIGR00954 3a01203 Peroxysomal 100.0 5.2E-66 1.1E-70 633.9 62.7 530 46-595 79-653 (659)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 8.4E-53 1.8E-57 461.3 27.1 237 382-622 1-237 (275)
48 COG1126 GlnQ ABC-type polar am 100.0 4.7E-50 1E-54 398.8 22.2 216 383-612 2-228 (240)
49 KOG0058 Peptide exporter, ABC 100.0 5.3E-48 1.1E-52 445.8 42.4 377 706-1087 134-510 (716)
50 PRK14257 phosphate ABC transpo 100.0 1.8E-49 3.9E-54 446.3 25.1 223 380-610 77-314 (329)
51 COG1117 PstB ABC-type phosphat 100.0 5.1E-49 1.1E-53 388.8 17.6 220 382-611 6-239 (253)
52 COG1135 AbcC ABC-type metal io 100.0 3.6E-48 7.8E-53 405.0 20.1 217 384-611 2-233 (339)
53 cd03252 ABCC_Hemolysin The ABC 100.0 2.5E-47 5.4E-52 414.1 27.3 235 384-620 1-235 (237)
54 COG1125 OpuBA ABC-type proline 100.0 3.8E-48 8.3E-53 391.9 18.4 217 384-615 2-231 (309)
55 cd03288 ABCC_SUR2 The SUR doma 100.0 8.2E-47 1.8E-51 414.1 28.1 240 380-621 16-255 (257)
56 cd03253 ABCC_ATM1_transporter 100.0 6.4E-46 1.4E-50 403.0 26.9 233 384-619 1-233 (236)
57 cd03254 ABCC_Glucan_exporter_l 100.0 6.9E-46 1.5E-50 400.8 26.4 226 383-610 2-227 (229)
58 cd03251 ABCC_MsbA MsbA is an e 100.0 7.4E-46 1.6E-50 401.9 26.7 232 384-617 1-232 (234)
59 COG4615 PvdE ABC-type sideroph 100.0 6.4E-43 1.4E-47 371.9 47.5 469 110-601 55-529 (546)
60 cd03244 ABCC_MRP_domain2 Domai 100.0 1.4E-45 3.1E-50 396.0 26.5 220 382-603 1-220 (221)
61 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.6E-45 3.4E-50 400.3 26.6 234 384-618 1-234 (238)
62 cd03245 ABCC_bacteriocin_expor 100.0 9.5E-45 2.1E-49 389.4 26.5 219 383-602 2-220 (220)
63 TIGR02314 ABC_MetN D-methionin 100.0 3.4E-45 7.5E-50 411.8 23.8 218 384-612 2-233 (343)
64 COG1120 FepC ABC-type cobalami 100.0 3E-45 6.4E-50 386.1 21.2 214 383-610 2-229 (258)
65 COG3839 MalK ABC-type sugar tr 100.0 3.7E-45 7.9E-50 400.2 22.6 216 383-614 3-228 (338)
66 COG3840 ThiQ ABC-type thiamine 100.0 3.5E-45 7.5E-50 351.7 18.9 209 384-610 2-220 (231)
67 COG1127 Ttg2A ABC-type transpo 100.0 1.6E-44 3.4E-49 365.1 22.8 224 382-619 7-245 (263)
68 PRK13631 cbiO cobalt transport 100.0 3.1E-44 6.7E-49 402.8 27.3 221 383-610 21-266 (320)
69 COG4178 ABC-type uncharacteriz 100.0 5E-41 1.1E-45 388.6 54.0 468 107-594 90-587 (604)
70 COG1116 TauB ABC-type nitrate/ 100.0 1E-44 2.2E-49 373.4 20.4 198 383-599 3-212 (248)
71 cd03248 ABCC_TAP TAP, the Tran 100.0 4.8E-44 1E-48 385.4 24.9 219 380-598 8-226 (226)
72 COG1122 CbiO ABC-type cobalt t 100.0 1.5E-44 3.3E-49 382.1 20.3 215 383-610 3-229 (235)
73 COG1136 SalX ABC-type antimicr 100.0 5.2E-44 1.1E-48 369.3 23.7 206 384-600 2-222 (226)
74 cd03260 ABC_PstB_phosphate_tra 100.0 3.3E-44 7.2E-49 386.9 22.0 212 384-607 1-227 (227)
75 COG1124 DppF ABC-type dipeptid 100.0 4.7E-44 1E-48 364.2 21.7 225 383-618 3-240 (252)
76 cd03261 ABC_Org_Solvent_Resist 100.0 4.5E-44 9.7E-49 387.9 22.7 213 384-610 1-227 (235)
77 COG3842 PotA ABC-type spermidi 100.0 1.7E-44 3.7E-49 397.1 18.9 217 383-615 5-232 (352)
78 PRK13650 cbiO cobalt transport 100.0 8.2E-44 1.8E-48 394.3 24.2 217 383-610 4-230 (279)
79 PRK14269 phosphate ABC transpo 100.0 1E-43 2.2E-48 387.4 24.1 218 383-610 2-231 (246)
80 COG2884 FtsE Predicted ATPase 100.0 5.7E-44 1.2E-48 346.7 17.8 208 384-604 2-221 (223)
81 COG3638 ABC-type phosphate/pho 100.0 9.8E-44 2.1E-48 358.4 20.0 213 383-608 3-236 (258)
82 PRK11650 ugpC glycerol-3-phosp 100.0 2.1E-43 4.5E-48 401.0 25.3 218 383-615 3-230 (356)
83 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.1E-43 4.6E-48 369.7 22.9 210 383-610 4-228 (254)
84 TIGR01186 proV glycine betaine 100.0 1.1E-43 2.3E-48 401.6 22.3 207 399-616 6-226 (363)
85 cd03369 ABCC_NFT1 Domain 2 of 100.0 6.8E-43 1.5E-47 371.0 25.4 203 382-604 5-207 (207)
86 PRK14273 phosphate ABC transpo 100.0 4.7E-43 1E-47 384.4 24.6 220 383-612 7-241 (254)
87 PRK11432 fbpC ferric transport 100.0 2.5E-43 5.4E-48 399.1 22.9 216 383-614 6-231 (351)
88 PRK14250 phosphate ABC transpo 100.0 7.4E-43 1.6E-47 379.2 25.4 222 383-617 3-229 (241)
89 COG1123 ATPase components of v 100.0 8.6E-43 1.9E-47 398.4 27.0 225 383-616 5-251 (539)
90 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.4E-42 5.2E-47 380.1 29.4 217 380-616 36-253 (282)
91 PRK13647 cbiO cobalt transport 100.0 5.4E-43 1.2E-47 386.7 24.2 213 383-608 4-226 (274)
92 PRK11153 metN DL-methionine tr 100.0 5E-43 1.1E-47 397.7 24.6 217 384-611 2-232 (343)
93 TIGR00972 3a0107s01c2 phosphat 100.0 5.7E-43 1.2E-47 382.0 23.8 217 384-610 2-233 (247)
94 PRK14242 phosphate transporter 100.0 6.4E-43 1.4E-47 383.3 23.7 218 383-610 6-238 (253)
95 cd03250 ABCC_MRP_domain1 Domai 100.0 9.3E-43 2E-47 369.0 24.0 200 384-597 1-204 (204)
96 PRK13637 cbiO cobalt transport 100.0 6.3E-43 1.4E-47 388.5 23.6 218 384-610 3-235 (287)
97 TIGR03265 PhnT2 putative 2-ami 100.0 5.8E-43 1.2E-47 396.9 23.6 217 383-615 4-230 (353)
98 PRK13635 cbiO cobalt transport 100.0 8E-43 1.7E-47 386.1 24.1 216 383-610 5-230 (279)
99 PRK10744 pstB phosphate transp 100.0 1.6E-42 3.5E-47 381.0 25.4 220 381-610 11-245 (260)
100 TIGR00960 3a0501s02 Type II (G 100.0 4.1E-43 8.8E-48 375.5 20.1 203 384-598 2-216 (216)
101 PRK13643 cbiO cobalt transport 100.0 1.3E-42 2.7E-47 386.3 24.4 216 384-610 2-234 (288)
102 cd03296 ABC_CysA_sulfate_impor 100.0 1E-42 2.2E-47 378.1 22.8 212 383-610 2-227 (239)
103 cd03219 ABC_Mj1267_LivG_branch 100.0 6.4E-43 1.4E-47 379.5 21.2 217 384-610 1-233 (236)
104 cd03256 ABC_PhnC_transporter A 100.0 1E-42 2.2E-47 379.2 22.9 212 384-608 1-233 (241)
105 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6.1E-43 1.3E-47 385.5 21.3 217 385-615 26-256 (269)
106 cd03263 ABC_subfamily_A The AB 100.0 9.3E-43 2E-47 373.9 21.7 211 384-607 1-219 (220)
107 PRK14235 phosphate transporter 100.0 1.6E-42 3.6E-47 382.0 24.1 220 381-610 17-252 (267)
108 PRK09452 potA putrescine/sperm 100.0 1.5E-42 3.3E-47 395.0 24.5 217 383-615 14-240 (375)
109 PRK13642 cbiO cobalt transport 100.0 2.2E-42 4.8E-47 382.8 24.8 217 383-610 4-230 (277)
110 PRK13634 cbiO cobalt transport 100.0 1.4E-42 3E-47 386.4 22.9 217 384-610 3-236 (290)
111 PRK10851 sulfate/thiosulfate t 100.0 1.7E-42 3.7E-47 393.0 23.8 217 383-615 2-232 (353)
112 PRK13646 cbiO cobalt transport 100.0 1.6E-42 3.5E-47 385.4 23.0 221 383-610 2-236 (286)
113 TIGR02315 ABC_phnC phosphonate 100.0 1.9E-42 4.2E-47 377.4 23.2 212 384-608 2-234 (243)
114 cd03258 ABC_MetN_methionine_tr 100.0 2E-42 4.3E-47 374.6 23.0 216 384-610 2-231 (233)
115 PRK14267 phosphate ABC transpo 100.0 2E-42 4.4E-47 379.3 22.7 218 383-610 4-238 (253)
116 cd03259 ABC_Carb_Solutes_like 100.0 1.1E-42 2.4E-47 371.3 19.7 203 384-602 1-213 (213)
117 TIGR03258 PhnT 2-aminoethylpho 100.0 1.9E-42 4.1E-47 393.0 22.7 217 382-614 4-233 (362)
118 PRK09536 btuD corrinoid ABC tr 100.0 2.8E-42 6.2E-47 394.6 24.2 221 383-619 3-236 (402)
119 PRK14274 phosphate ABC transpo 100.0 4.2E-42 9.1E-47 377.7 24.6 218 383-610 12-244 (259)
120 PRK13632 cbiO cobalt transport 100.0 3.6E-42 7.9E-47 380.1 24.1 216 383-610 7-232 (271)
121 PRK14236 phosphate transporter 100.0 4E-42 8.6E-47 380.0 24.3 220 381-610 23-257 (272)
122 PRK13636 cbiO cobalt transport 100.0 3.6E-42 7.8E-47 382.0 24.0 215 383-610 5-232 (283)
123 cd03224 ABC_TM1139_LivF_branch 100.0 2.2E-42 4.7E-47 371.8 21.6 217 384-609 1-221 (222)
124 PRK14251 phosphate ABC transpo 100.0 2.3E-42 5E-47 378.4 22.2 218 383-610 4-236 (251)
125 PRK13640 cbiO cobalt transport 100.0 5.7E-42 1.2E-46 380.2 25.0 216 383-610 5-233 (282)
126 PRK13633 cobalt transporter AT 100.0 4.1E-42 9E-47 381.2 23.8 217 383-610 4-234 (280)
127 PRK11000 maltose/maltodextrin 100.0 3.2E-42 7E-47 394.2 23.6 214 383-612 3-226 (369)
128 cd03226 ABC_cobalt_CbiO_domain 100.0 1.8E-42 3.9E-47 367.1 20.0 199 385-599 1-205 (205)
129 cd03264 ABC_drug_resistance_li 100.0 2.9E-42 6.3E-47 367.4 21.6 203 384-602 1-211 (211)
130 cd03290 ABCC_SUR1_N The SUR do 100.0 5.5E-42 1.2E-46 367.1 23.7 210 385-597 2-218 (218)
131 PRK14247 phosphate ABC transpo 100.0 3.8E-42 8.2E-47 376.5 22.9 218 383-610 3-235 (250)
132 PRK14240 phosphate transporter 100.0 6.9E-42 1.5E-46 374.4 24.9 219 382-610 2-235 (250)
133 TIGR03005 ectoine_ehuA ectoine 100.0 4.6E-42 1E-46 376.0 23.5 213 384-610 1-237 (252)
134 PRK11629 lolD lipoprotein tran 100.0 3.3E-42 7.3E-47 372.5 22.1 210 383-603 5-228 (233)
135 PRK14237 phosphate transporter 100.0 5.6E-42 1.2E-46 377.8 24.2 219 382-610 19-252 (267)
136 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.7E-42 8E-47 374.4 22.5 216 384-610 1-226 (242)
137 PRK15079 oligopeptide ABC tran 100.0 5.4E-42 1.2E-46 386.0 24.2 225 383-617 8-259 (331)
138 PRK13651 cobalt transporter AT 100.0 5.9E-42 1.3E-46 382.2 24.2 216 384-610 3-255 (305)
139 PRK14245 phosphate ABC transpo 100.0 3.9E-42 8.4E-47 376.2 22.4 218 383-610 3-235 (250)
140 COG1118 CysA ABC-type sulfate/ 100.0 1.9E-42 4E-47 361.0 18.7 216 383-614 2-232 (345)
141 PRK14268 phosphate ABC transpo 100.0 5.3E-42 1.1E-46 376.5 23.4 218 383-610 12-243 (258)
142 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.4E-42 5.3E-47 370.2 20.1 204 384-598 1-218 (218)
143 PRK14239 phosphate transporter 100.0 5.4E-42 1.2E-46 375.9 23.2 218 383-610 5-237 (252)
144 PRK13644 cbiO cobalt transport 100.0 7.9E-42 1.7E-46 377.5 24.4 214 384-610 2-225 (274)
145 PRK14244 phosphate ABC transpo 100.0 3.3E-42 7.2E-47 377.0 21.3 219 384-612 6-240 (251)
146 cd03266 ABC_NatA_sodium_export 100.0 5.8E-42 1.2E-46 367.3 22.3 207 384-602 2-218 (218)
147 PRK14248 phosphate ABC transpo 100.0 8E-42 1.7E-46 377.2 24.1 218 383-610 21-253 (268)
148 PRK11831 putative ABC transpor 100.0 6.5E-42 1.4E-46 377.6 23.3 223 383-619 7-243 (269)
149 PRK14261 phosphate ABC transpo 100.0 7.9E-42 1.7E-46 374.4 23.6 218 383-610 6-238 (253)
150 cd03268 ABC_BcrA_bacitracin_re 100.0 5.5E-42 1.2E-46 364.5 21.6 203 384-602 1-208 (208)
151 PRK13652 cbiO cobalt transport 100.0 9.3E-42 2E-46 377.8 24.1 214 384-610 4-228 (277)
152 PRK10575 iron-hydroxamate tran 100.0 6.9E-42 1.5E-46 376.9 22.7 213 383-609 11-237 (265)
153 PRK13648 cbiO cobalt transport 100.0 1.1E-41 2.4E-46 376.1 24.4 216 383-610 7-232 (269)
154 cd03247 ABCC_cytochrome_bd The 100.0 6.5E-42 1.4E-46 354.0 21.1 178 384-602 1-178 (178)
155 PRK10070 glycine betaine trans 100.0 6.6E-42 1.4E-46 391.4 23.3 205 400-615 42-260 (400)
156 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7.9E-42 1.7E-46 370.4 22.6 216 384-610 2-222 (236)
157 PRK14238 phosphate transporter 100.0 1.2E-41 2.6E-46 375.7 24.3 218 383-610 24-256 (271)
158 PRK14259 phosphate ABC transpo 100.0 1.7E-41 3.6E-46 374.1 25.4 219 382-610 12-254 (269)
159 TIGR02211 LolD_lipo_ex lipopro 100.0 7.6E-42 1.6E-46 367.2 22.0 205 384-599 2-220 (221)
160 cd03265 ABC_DrrA DrrA is the A 100.0 7.7E-42 1.7E-46 366.5 22.0 209 384-607 1-219 (220)
161 PRK14249 phosphate ABC transpo 100.0 1.5E-41 3.2E-46 371.8 24.6 218 383-610 4-236 (251)
162 PRK11124 artP arginine transpo 100.0 1.1E-41 2.3E-46 371.0 23.1 214 383-610 2-231 (242)
163 TIGR02769 nickel_nikE nickel i 100.0 1.2E-41 2.7E-46 374.8 23.7 225 384-618 3-249 (265)
164 PRK14243 phosphate transporter 100.0 1.7E-41 3.7E-46 373.2 24.7 218 383-610 10-249 (264)
165 PRK14256 phosphate ABC transpo 100.0 1.5E-41 3.3E-46 372.0 24.0 219 382-610 3-237 (252)
166 PRK14262 phosphate ABC transpo 100.0 1.1E-41 2.4E-46 372.8 22.7 218 383-610 3-235 (250)
167 PRK09493 glnQ glutamine ABC tr 100.0 1.1E-41 2.4E-46 370.4 22.5 213 384-610 2-226 (240)
168 cd03301 ABC_MalK_N The N-termi 100.0 7E-42 1.5E-46 365.2 20.6 203 384-602 1-213 (213)
169 cd03218 ABC_YhbG The ABC trans 100.0 1.2E-41 2.5E-46 368.6 22.4 216 384-609 1-222 (232)
170 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.3E-42 1.1E-46 367.8 19.5 206 384-605 1-219 (220)
171 TIGR03411 urea_trans_UrtD urea 100.0 1.2E-41 2.7E-46 370.7 22.7 212 384-609 3-231 (242)
172 PRK11607 potG putrescine trans 100.0 1.1E-41 2.3E-46 388.9 23.1 217 383-615 19-245 (377)
173 PRK10619 histidine/lysine/argi 100.0 1.8E-41 4E-46 372.2 23.8 216 382-610 4-242 (257)
174 PRK14266 phosphate ABC transpo 100.0 1.8E-41 3.9E-46 371.1 23.7 221 383-613 3-238 (250)
175 PRK10247 putative ABC transpor 100.0 9.8E-42 2.1E-46 366.4 21.0 210 383-605 7-223 (225)
176 PRK11231 fecE iron-dicitrate t 100.0 1.5E-41 3.3E-46 372.4 22.9 212 384-609 3-227 (255)
177 PRK14270 phosphate ABC transpo 100.0 2.2E-41 4.8E-46 370.4 24.1 218 383-610 4-236 (251)
178 PRK14253 phosphate ABC transpo 100.0 2.5E-41 5.4E-46 369.8 24.4 218 383-610 3-234 (249)
179 PRK14271 phosphate ABC transpo 100.0 2.8E-41 6E-46 373.2 24.9 218 383-610 21-252 (276)
180 TIGR03410 urea_trans_UrtE urea 100.0 7.8E-42 1.7E-46 369.3 20.1 211 384-607 1-219 (230)
181 PRK11247 ssuB aliphatic sulfon 100.0 2E-41 4.2E-46 369.3 23.2 204 383-605 12-219 (257)
182 TIGR02673 FtsE cell division A 100.0 1E-41 2.2E-46 364.2 20.3 201 384-597 2-214 (214)
183 PRK11264 putative amino-acid A 100.0 4.1E-41 8.9E-46 368.4 25.6 213 384-610 4-234 (250)
184 cd03292 ABC_FtsE_transporter F 100.0 1.2E-41 2.7E-46 363.8 20.9 202 384-598 1-214 (214)
185 cd03225 ABC_cobalt_CbiO_domain 100.0 9.9E-42 2.1E-46 363.5 20.0 201 385-597 1-211 (211)
186 TIGR03415 ABC_choXWV_ATP choli 100.0 1.2E-41 2.6E-46 386.4 21.8 208 399-617 37-262 (382)
187 PRK13649 cbiO cobalt transport 100.0 1.9E-41 4.1E-46 376.7 23.0 217 384-610 3-235 (280)
188 PRK11614 livF leucine/isoleuci 100.0 1.5E-41 3.3E-46 368.5 21.8 218 383-609 5-226 (237)
189 PRK13645 cbiO cobalt transport 100.0 2.3E-41 5E-46 377.3 23.8 219 382-610 5-241 (289)
190 PRK13638 cbiO cobalt transport 100.0 2.1E-41 4.6E-46 374.3 23.2 213 384-610 2-226 (271)
191 PRK13641 cbiO cobalt transport 100.0 3.2E-41 7E-46 375.1 24.4 218 383-610 2-235 (287)
192 PRK14252 phosphate ABC transpo 100.0 4E-41 8.6E-46 371.1 24.5 220 381-610 14-250 (265)
193 PRK14260 phosphate ABC transpo 100.0 2.7E-41 5.8E-46 371.2 23.0 218 383-610 7-244 (259)
194 PRK14254 phosphate ABC transpo 100.0 4.3E-41 9.4E-46 373.1 24.6 219 382-610 38-270 (285)
195 PRK13537 nodulation ABC transp 100.0 2.3E-41 5E-46 378.4 22.5 213 383-610 7-228 (306)
196 PRK11308 dppF dipeptide transp 100.0 3.8E-41 8.3E-46 378.9 24.4 226 383-618 5-253 (327)
197 cd03235 ABC_Metallic_Cations A 100.0 1.3E-41 2.7E-46 363.1 19.5 198 385-602 1-213 (213)
198 cd03300 ABC_PotA_N PotA is an 100.0 1.9E-41 4.1E-46 366.2 21.0 211 384-610 1-221 (232)
199 PRK13548 hmuV hemin importer A 100.0 5E-41 1.1E-45 368.2 24.5 212 384-609 3-230 (258)
200 PRK10584 putative ABC transpor 100.0 3.3E-41 7.2E-46 363.8 22.7 208 383-601 6-227 (228)
201 cd03246 ABCC_Protease_Secretio 100.0 2.8E-41 6.2E-46 347.4 20.7 172 384-598 1-173 (173)
202 PRK13639 cbiO cobalt transport 100.0 2.9E-41 6.3E-46 373.4 22.2 214 384-610 2-227 (275)
203 TIGR00968 3a0106s01 sulfate AB 100.0 5.8E-41 1.3E-45 363.4 24.0 211 384-610 1-221 (237)
204 PRK11022 dppD dipeptide transp 100.0 4.1E-41 8.8E-46 379.0 23.5 227 384-618 4-252 (326)
205 cd03298 ABC_ThiQ_thiamine_tran 100.0 4.5E-41 9.7E-46 358.3 22.5 201 384-602 1-211 (211)
206 TIGR03873 F420-0_ABC_ATP propo 100.0 4E-41 8.7E-46 369.3 22.7 212 384-609 2-226 (256)
207 PRK14263 phosphate ABC transpo 100.0 5.4E-41 1.2E-45 368.1 23.7 218 383-610 8-246 (261)
208 PRK14272 phosphate ABC transpo 100.0 5.3E-41 1.2E-45 368.0 23.4 219 383-611 4-238 (252)
209 PRK09473 oppD oligopeptide tra 100.0 4.2E-41 9.2E-46 379.1 23.1 228 383-618 12-260 (330)
210 PRK14275 phosphate ABC transpo 100.0 4.4E-41 9.6E-46 373.5 22.9 219 382-610 38-271 (286)
211 cd03257 ABC_NikE_OppD_transpor 100.0 3.1E-41 6.8E-46 364.4 20.9 212 384-602 2-228 (228)
212 PRK11300 livG leucine/isoleuci 100.0 5.1E-41 1.1E-45 368.8 22.9 220 383-610 5-244 (255)
213 PRK10895 lipopolysaccharide AB 100.0 7.3E-41 1.6E-45 364.2 23.7 217 384-610 4-227 (241)
214 PRK14246 phosphate ABC transpo 100.0 4.8E-41 1.1E-45 367.6 22.4 225 383-617 10-249 (257)
215 PRK10908 cell division protein 100.0 5.9E-41 1.3E-45 360.2 22.5 204 384-600 2-217 (222)
216 PRK10253 iron-enterobactin tra 100.0 5.8E-41 1.3E-45 369.5 22.9 214 382-609 6-233 (265)
217 TIGR01288 nodI ATP-binding ABC 100.0 5.1E-41 1.1E-45 376.6 22.7 213 383-610 4-225 (303)
218 PRK10771 thiQ thiamine transpo 100.0 9.9E-41 2.1E-45 360.8 24.0 209 384-610 2-220 (232)
219 PRK14241 phosphate transporter 100.0 6.2E-41 1.3E-45 368.3 22.5 218 383-610 4-243 (258)
220 cd03262 ABC_HisP_GlnQ_permease 100.0 4.1E-41 8.8E-46 359.5 19.9 201 384-598 1-213 (213)
221 PRK14264 phosphate ABC transpo 100.0 1E-40 2.2E-45 373.8 23.9 219 382-610 44-290 (305)
222 PRK11144 modC molybdate transp 100.0 8E-41 1.7E-45 381.1 23.3 211 384-611 2-220 (352)
223 PRK14255 phosphate ABC transpo 100.0 9.4E-41 2E-45 365.9 22.6 218 383-610 5-237 (252)
224 PRK14258 phosphate ABC transpo 100.0 1.1E-40 2.3E-45 366.5 23.1 218 383-610 7-246 (261)
225 cd03269 ABC_putative_ATPase Th 100.0 6.3E-41 1.4E-45 356.9 20.3 201 384-602 1-210 (210)
226 PRK15112 antimicrobial peptide 100.0 1.6E-40 3.5E-45 366.1 23.9 227 383-620 4-251 (267)
227 PRK14265 phosphate ABC transpo 100.0 2.3E-40 5.1E-45 365.7 25.2 218 383-610 20-259 (274)
228 cd03299 ABC_ModC_like Archeal 100.0 1.5E-40 3.3E-45 359.7 23.3 210 384-610 1-220 (235)
229 TIGR03522 GldA_ABC_ATP gliding 100.0 9.2E-41 2E-45 373.8 22.0 212 384-610 3-222 (301)
230 PRK15093 antimicrobial peptide 100.0 1.6E-40 3.5E-45 375.6 24.2 227 384-618 4-257 (330)
231 PRK09984 phosphonate/organopho 100.0 2E-40 4.4E-45 365.0 24.3 211 383-607 4-240 (262)
232 PRK11701 phnK phosphonate C-P 100.0 1.9E-40 4E-45 364.5 23.7 225 383-616 6-248 (258)
233 TIGR01978 sufC FeS assembly AT 100.0 1.1E-40 2.3E-45 363.8 21.4 213 384-608 1-233 (243)
234 TIGR01277 thiQ thiamine ABC tr 100.0 1.9E-40 4.2E-45 353.7 22.8 202 384-603 1-212 (213)
235 PRK13547 hmuV hemin importer A 100.0 2.2E-40 4.8E-45 364.1 23.7 212 384-609 2-244 (272)
236 PRK13536 nodulation factor exp 100.0 1.3E-40 2.9E-45 375.7 22.0 213 383-610 41-262 (340)
237 cd03234 ABCG_White The White s 100.0 1.4E-40 3E-45 358.2 19.3 210 384-602 4-226 (226)
238 TIGR00956 3a01205 Pleiotropic 100.0 1.8E-38 3.8E-43 416.2 42.4 202 399-608 74-299 (1394)
239 TIGR02982 heterocyst_DevA ABC 100.0 3.7E-40 8E-45 353.3 21.6 204 384-598 2-219 (220)
240 TIGR01188 drrA daunorubicin re 100.0 2.4E-40 5.1E-45 371.0 20.2 200 399-610 6-214 (302)
241 PRK10419 nikE nickel transport 100.0 5.3E-40 1.1E-44 362.0 22.3 225 384-616 4-247 (268)
242 TIGR02142 modC_ABC molybdenum 100.0 6E-40 1.3E-44 374.6 22.9 209 388-612 4-224 (354)
243 PRK11248 tauB taurine transpor 100.0 5.6E-40 1.2E-44 358.8 21.2 203 384-605 2-216 (255)
244 PRK10418 nikD nickel transport 100.0 1.1E-39 2.3E-44 357.3 23.4 213 383-610 4-231 (254)
245 cd03233 ABC_PDR_domain1 The pl 100.0 6.8E-40 1.5E-44 345.6 20.7 191 383-602 3-202 (202)
246 cd03230 ABC_DR_subfamily_A Thi 100.0 8E-40 1.7E-44 336.6 19.6 170 384-598 1-173 (173)
247 cd03228 ABCC_MRP_Like The MRP 100.0 1.5E-39 3.2E-44 334.0 20.7 171 384-597 1-171 (171)
248 cd03229 ABC_Class3 This class 100.0 1.4E-39 2.9E-44 336.5 19.7 172 384-597 1-178 (178)
249 COG4175 ProV ABC-type proline/ 100.0 7.2E-40 1.6E-44 341.2 17.5 224 383-617 4-262 (386)
250 COG1131 CcmA ABC-type multidru 100.0 1.5E-39 3.3E-44 359.9 21.0 214 383-610 4-227 (293)
251 TIGR02323 CP_lyasePhnK phospho 100.0 2.5E-39 5.4E-44 354.9 22.5 224 383-616 3-245 (253)
252 cd03223 ABCD_peroxisomal_ALDP 100.0 2.2E-39 4.8E-44 330.3 20.2 164 384-597 1-164 (166)
253 TIGR03740 galliderm_ABC gallid 100.0 2.1E-39 4.6E-44 348.4 21.1 205 384-606 1-210 (223)
254 COG0410 LivF ABC-type branched 100.0 3.2E-39 6.9E-44 326.8 20.9 219 384-610 4-227 (237)
255 COG4619 ABC-type uncharacteriz 100.0 9.1E-40 2E-44 309.8 15.8 191 398-598 15-212 (223)
256 cd03297 ABC_ModC_molybdenum_tr 100.0 3.3E-39 7.1E-44 344.6 20.9 200 385-602 3-214 (214)
257 cd03213 ABCG_EPDR ABCG transpo 100.0 2.5E-39 5.4E-44 339.1 19.6 183 383-602 3-194 (194)
258 PRK15056 manganese/iron transp 100.0 4.5E-39 9.7E-44 355.7 22.5 209 383-609 6-230 (272)
259 PRK09580 sufC cysteine desulfu 100.0 2.1E-39 4.4E-44 354.7 19.5 212 384-607 2-233 (248)
260 cd03215 ABC_Carb_Monos_II This 100.0 2.3E-39 4.9E-44 336.2 18.8 172 383-598 4-182 (182)
261 cd03232 ABC_PDR_domain2 The pl 100.0 2.3E-39 4.9E-44 339.0 18.9 182 383-602 3-192 (192)
262 CHL00131 ycf16 sulfate ABC tra 100.0 9.1E-39 2E-43 350.4 23.1 212 383-607 7-239 (252)
263 TIGR03608 L_ocin_972_ABC putat 100.0 3.9E-39 8.5E-44 342.3 18.7 194 386-593 1-206 (206)
264 cd03217 ABC_FeS_Assembly ABC-t 100.0 8.3E-39 1.8E-43 337.0 21.0 185 384-608 1-192 (200)
265 PRK09544 znuC high-affinity zi 100.0 1.4E-38 3.1E-43 346.2 23.4 208 383-619 4-217 (251)
266 TIGR02770 nickel_nikD nickel i 100.0 7.7E-39 1.7E-43 345.4 20.1 206 401-616 1-222 (230)
267 cd03214 ABC_Iron-Siderophores_ 100.0 8.3E-39 1.8E-43 331.3 19.0 177 385-602 1-180 (180)
268 PRK03695 vitamin B12-transport 100.0 2.7E-38 5.8E-43 344.6 22.8 206 385-609 2-222 (248)
269 COG1123 ATPase components of v 100.0 2.1E-38 4.6E-43 362.4 22.2 226 383-619 280-529 (539)
270 PRK10261 glutathione transport 100.0 2.9E-38 6.3E-43 387.2 24.4 224 383-617 313-561 (623)
271 cd03231 ABC_CcmA_heme_exporter 100.0 3.4E-38 7.4E-43 332.8 21.6 195 384-593 1-198 (201)
272 COG4555 NatA ABC-type Na+ tran 100.0 5.9E-39 1.3E-43 314.3 13.7 213 384-610 2-223 (245)
273 cd03216 ABC_Carb_Monos_I This 100.0 3.8E-38 8.3E-43 320.2 20.2 159 384-600 1-162 (163)
274 PRK15439 autoinducer 2 ABC tra 100.0 4.6E-38 1E-42 378.1 24.0 213 383-609 11-229 (510)
275 TIGR01184 ntrCD nitrate transp 100.0 4.1E-38 9E-43 339.3 20.6 191 402-608 1-203 (230)
276 COG0444 DppD ABC-type dipeptid 100.0 7.9E-38 1.7E-42 333.7 22.2 225 384-619 2-253 (316)
277 PRK13540 cytochrome c biogenes 100.0 4.7E-38 1E-42 331.7 20.3 194 384-592 2-198 (200)
278 PLN03140 ABC transporter G fam 100.0 1.3E-36 2.9E-41 396.4 37.6 207 399-608 178-426 (1470)
279 PRK13538 cytochrome c biogenes 100.0 7.1E-38 1.5E-42 331.4 20.3 195 384-593 2-202 (204)
280 PRK13549 xylose transporter AT 100.0 7.3E-38 1.6E-42 376.7 22.3 216 383-608 5-231 (506)
281 TIGR00955 3a01204 The Eye Pigm 100.0 2.1E-38 4.5E-43 388.1 17.6 218 383-609 17-256 (617)
282 PRK09700 D-allose transporter 100.0 5.5E-38 1.2E-42 378.5 21.1 213 383-609 5-234 (510)
283 cd03267 ABC_NatA_like Similar 100.0 8.4E-38 1.8E-42 338.3 19.7 192 399-602 34-236 (236)
284 KOG0060 Long-chain acyl-CoA tr 100.0 4.2E-35 9.1E-40 327.7 41.0 453 127-595 146-641 (659)
285 PRK10261 glutathione transport 100.0 9.1E-38 2E-42 382.8 21.3 220 383-610 12-259 (623)
286 PRK10762 D-ribose transporter 100.0 1.3E-37 2.9E-42 374.1 22.2 212 383-608 4-229 (501)
287 COG1137 YhbG ABC-type (unclass 100.0 1.7E-38 3.7E-43 310.6 11.4 222 383-610 4-229 (243)
288 PRK10938 putative molybdenum t 100.0 2.5E-37 5.4E-42 371.3 23.8 211 384-610 4-225 (490)
289 PRK15134 microcin C ABC transp 100.0 1.5E-37 3.2E-42 376.1 22.0 217 383-610 275-516 (529)
290 COG4172 ABC-type uncharacteriz 100.0 4.3E-37 9.3E-42 329.1 22.1 224 382-617 275-524 (534)
291 PRK13539 cytochrome c biogenes 100.0 2.9E-37 6.3E-42 327.3 20.7 194 384-595 3-200 (207)
292 PLN03211 ABC transporter G-25; 100.0 2.8E-37 6.1E-42 377.1 23.5 202 399-609 81-296 (659)
293 TIGR01189 ccmA heme ABC export 100.0 2.1E-37 4.6E-42 326.3 19.2 193 384-592 1-197 (198)
294 PRK13543 cytochrome c biogenes 100.0 4.4E-37 9.6E-42 327.7 21.2 196 383-595 11-212 (214)
295 COG4608 AppF ABC-type oligopep 100.0 2.8E-37 6.1E-42 322.7 19.0 195 384-619 5-209 (268)
296 PRK10982 galactose/methyl gala 100.0 2.6E-37 5.5E-42 371.0 21.3 213 386-608 1-222 (491)
297 PRK11288 araG L-arabinose tran 100.0 4E-37 8.7E-42 369.8 22.2 207 383-603 4-223 (501)
298 PRK15134 microcin C ABC transp 100.0 5.9E-37 1.3E-41 370.9 23.6 220 383-610 5-247 (529)
299 PRK13545 tagH teichoic acids e 100.0 1.2E-36 2.6E-41 349.6 24.8 204 383-610 21-233 (549)
300 TIGR02324 CP_lyasePhnL phospho 100.0 6.3E-37 1.4E-41 329.6 20.3 200 384-593 2-222 (224)
301 TIGR03771 anch_rpt_ABC anchore 100.0 5.2E-37 1.1E-41 329.1 18.9 187 407-610 1-202 (223)
302 COG4598 HisP ABC-type histidin 100.0 3E-37 6.5E-42 295.5 14.9 216 383-612 6-244 (256)
303 TIGR03269 met_CoM_red_A2 methy 100.0 6.5E-37 1.4E-41 370.1 21.1 221 383-609 279-517 (520)
304 PRK13546 teichoic acids export 100.0 1.3E-36 2.7E-41 332.6 21.4 188 399-610 37-233 (264)
305 TIGR01166 cbiO cobalt transpor 100.0 6E-37 1.3E-41 320.8 17.9 174 399-583 5-189 (190)
306 COG4559 ABC-type hemin transpo 100.0 1.9E-36 4.1E-41 299.0 20.2 213 384-610 2-231 (259)
307 TIGR03269 met_CoM_red_A2 methy 100.0 8.6E-37 1.9E-41 369.0 21.3 212 384-609 1-258 (520)
308 PRK13541 cytochrome c biogenes 100.0 1E-36 2.2E-41 320.1 18.9 189 384-591 2-193 (195)
309 TIGR00958 3a01208 Conjugate Tr 100.0 5.4E-34 1.2E-38 355.5 46.7 367 715-1087 157-523 (711)
310 PRK10535 macrolide transporter 100.0 1.7E-36 3.8E-41 372.7 23.8 215 383-608 4-231 (648)
311 PRK13549 xylose transporter AT 100.0 7E-37 1.5E-41 368.2 19.9 219 383-608 259-493 (506)
312 TIGR02633 xylG D-xylose ABC tr 100.0 1.4E-36 3.1E-41 365.6 22.4 210 384-607 2-228 (500)
313 COG0411 LivG ABC-type branched 100.0 7.9E-37 1.7E-41 311.8 16.5 217 384-610 5-240 (250)
314 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.3E-36 2.9E-41 326.0 18.6 194 384-602 23-224 (224)
315 COG4181 Predicted ABC-type tra 100.0 2.2E-36 4.8E-41 287.7 17.0 207 383-600 6-226 (228)
316 TIGR01257 rim_protein retinal- 100.0 3.6E-36 7.9E-41 392.1 23.5 216 382-610 927-1150(2272)
317 COG4525 TauB ABC-type taurine 100.0 2E-36 4.3E-41 294.2 15.6 204 384-604 4-219 (259)
318 TIGR01257 rim_protein retinal- 100.0 1.4E-34 3E-39 377.4 36.9 215 383-610 1937-2160(2272)
319 COG4148 ModC ABC-type molybdat 100.0 2.9E-36 6.2E-41 309.0 16.3 197 403-610 15-219 (352)
320 PRK09700 D-allose transporter 100.0 5.6E-36 1.2E-40 361.1 20.3 211 383-605 265-494 (510)
321 TIGR01187 potA spermidine/putr 100.0 6.4E-36 1.4E-40 337.4 19.3 184 417-613 1-194 (325)
322 TIGR00956 3a01205 Pleiotropic 100.0 7.9E-36 1.7E-40 391.3 21.4 214 383-607 759-991 (1394)
323 COG4161 ArtP ABC-type arginine 100.0 1.2E-35 2.6E-40 279.3 16.5 212 383-609 2-230 (242)
324 TIGR02633 xylG D-xylose ABC tr 100.0 9.8E-36 2.1E-40 358.4 20.0 214 383-606 257-489 (500)
325 cd03237 ABC_RNaseL_inhibitor_d 100.0 3E-35 6.6E-40 318.6 19.9 193 391-608 1-206 (246)
326 COG1129 MglA ABC-type sugar tr 100.0 5E-35 1.1E-39 332.8 22.0 210 383-604 8-229 (500)
327 PRK10762 D-ribose transporter 100.0 1.7E-35 3.7E-40 355.8 19.1 210 383-607 257-482 (501)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3E-35 6.5E-40 357.2 21.0 210 383-610 4-249 (552)
329 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.5E-35 3.3E-40 322.0 16.4 201 387-602 4-220 (255)
330 PRK11288 araG L-arabinose tran 100.0 1.8E-35 3.9E-40 355.6 18.7 212 383-608 257-484 (501)
331 PRK11819 putative ABC transpor 100.0 4.6E-35 1E-39 355.5 22.2 210 383-610 6-251 (556)
332 PRK15064 ABC transporter ATP-b 100.0 4.8E-35 1E-39 354.4 21.7 209 384-610 2-243 (530)
333 PRK15064 ABC transporter ATP-b 100.0 7.4E-35 1.6E-39 352.7 22.9 201 383-610 319-526 (530)
334 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 5.5E-35 1.2E-39 290.2 17.7 143 384-597 1-144 (144)
335 PRK15177 Vi polysaccharide exp 100.0 4.1E-35 8.9E-40 311.5 17.3 186 401-609 2-192 (213)
336 COG4604 CeuD ABC-type enteroch 100.0 3.5E-35 7.5E-40 286.3 13.6 220 384-619 2-233 (252)
337 TIGR02868 CydC thiol reductant 100.0 9.1E-32 2E-36 326.7 46.6 315 770-1088 62-378 (529)
338 COG2274 SunT ABC-type bacterio 100.0 8.1E-32 1.8E-36 325.9 45.0 320 764-1088 197-516 (709)
339 PRK15439 autoinducer 2 ABC tra 100.0 1.9E-34 4.2E-39 346.7 19.2 211 383-608 268-491 (510)
340 COG3845 ABC-type uncharacteriz 100.0 5.9E-34 1.3E-38 316.1 20.1 209 383-601 4-221 (501)
341 PRK10938 putative molybdenum t 100.0 2.6E-34 5.7E-39 345.1 18.7 206 383-601 260-484 (490)
342 PRK10982 galactose/methyl gala 100.0 1.1E-33 2.5E-38 339.4 20.8 212 383-605 250-476 (491)
343 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.4E-33 5.3E-38 284.0 18.5 154 386-597 2-157 (157)
344 TIGR01193 bacteriocin_ABC ABC- 100.0 1.2E-30 2.6E-35 327.2 46.4 360 721-1088 158-517 (708)
345 PLN03073 ABC transporter F fam 100.0 3.8E-33 8.3E-38 342.3 22.8 199 383-607 508-712 (718)
346 PRK11819 putative ABC transpor 100.0 5.6E-33 1.2E-37 337.2 22.5 202 383-610 324-534 (556)
347 cd03238 ABC_UvrA The excision 100.0 5.5E-33 1.2E-37 283.0 18.6 156 398-597 7-165 (176)
348 PLN03140 ABC transporter G fam 100.0 6.4E-33 1.4E-37 362.0 24.2 215 382-606 866-1107(1470)
349 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.5E-30 5.3E-35 323.2 46.5 319 763-1088 178-496 (686)
350 cd03222 ABC_RNaseL_inhibitor T 100.0 2.2E-33 4.9E-38 286.1 15.6 145 387-599 4-151 (177)
351 PRK10636 putative ABC transpor 100.0 6.6E-33 1.4E-37 340.0 22.0 199 383-608 312-516 (638)
352 TIGR02857 CydD thiol reductant 100.0 4.2E-30 9.1E-35 312.2 46.2 359 722-1088 6-365 (529)
353 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.5E-33 2.1E-37 335.3 22.6 200 383-608 322-530 (552)
354 PRK11160 cysteine/glutathione 100.0 5.5E-30 1.2E-34 312.6 46.5 317 766-1088 65-383 (574)
355 PRK11147 ABC transporter ATPas 100.0 1.1E-32 2.4E-37 339.1 22.9 200 383-608 319-527 (635)
356 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 5.3E-30 1.2E-34 321.7 46.3 322 763-1088 196-522 (710)
357 PRK11174 cysteine/glutathione 100.0 5.9E-30 1.3E-34 314.9 45.5 366 716-1088 19-393 (588)
358 COG1101 PhnK ABC-type uncharac 100.0 7.7E-33 1.7E-37 274.1 14.7 202 398-601 18-230 (263)
359 PRK13409 putative ATPase RIL; 100.0 1.7E-32 3.6E-37 331.2 20.7 192 383-603 340-536 (590)
360 TIGR01846 type_I_sec_HlyB type 100.0 1.2E-29 2.6E-34 317.1 46.4 320 763-1088 181-500 (694)
361 TIGR03375 type_I_sec_LssB type 100.0 1.4E-29 3.1E-34 316.7 46.4 319 764-1088 190-508 (694)
362 TIGR02203 MsbA_lipidA lipid A 100.0 2E-29 4.4E-34 309.6 46.3 363 718-1088 13-375 (571)
363 PRK10636 putative ABC transpor 100.0 6.6E-32 1.4E-36 331.2 22.4 208 384-609 2-236 (638)
364 COG4167 SapF ABC-type antimicr 100.0 3.6E-32 7.7E-37 261.3 15.2 202 399-611 26-241 (267)
365 TIGR02204 MsbA_rel ABC transpo 100.0 4.5E-29 9.7E-34 306.8 46.7 362 723-1088 22-383 (576)
366 COG1119 ModF ABC-type molybden 100.0 1.6E-31 3.4E-36 272.9 20.3 208 382-603 30-256 (257)
367 COG4136 ABC-type uncharacteriz 100.0 4.8E-32 1E-36 252.3 15.0 198 383-604 2-210 (213)
368 PRK10790 putative multidrug tr 100.0 4.9E-29 1.1E-33 306.8 45.5 359 720-1088 24-384 (592)
369 TIGR01192 chvA glucan exporter 100.0 7E-29 1.5E-33 303.3 46.1 361 718-1088 18-378 (585)
370 PRK10789 putative multidrug tr 100.0 3.7E-29 8.1E-34 305.3 43.6 321 762-1088 37-358 (569)
371 COG4172 ABC-type uncharacteriz 100.0 1.5E-31 3.2E-36 286.7 19.2 225 384-619 7-257 (534)
372 PRK11147 ABC transporter ATPas 100.0 2.3E-31 5.1E-36 327.4 22.2 207 384-610 4-244 (635)
373 PRK11176 lipid transporter ATP 100.0 1.4E-28 3.1E-33 302.5 46.1 316 767-1088 71-386 (582)
374 TIGR01194 cyc_pep_trnsptr cycl 100.0 1E-28 2.3E-33 300.2 43.4 316 767-1088 59-385 (555)
375 COG1132 MdlB ABC-type multidru 100.0 1.8E-28 4E-33 299.9 45.6 320 762-1088 53-372 (567)
376 PRK13409 putative ATPase RIL; 100.0 1.7E-31 3.6E-36 322.5 15.7 193 387-596 77-287 (590)
377 KOG0064 Peroxisomal long-chain 100.0 1.1E-27 2.4E-32 263.9 43.5 446 125-593 179-681 (728)
378 COG0396 sufC Cysteine desulfur 100.0 2.5E-30 5.5E-35 260.4 20.4 215 383-609 3-233 (251)
379 COG4152 ABC-type uncharacteriz 100.0 5.6E-31 1.2E-35 265.6 15.5 214 383-610 2-220 (300)
380 COG1134 TagH ABC-type polysacc 100.0 1.3E-30 2.8E-35 266.9 18.3 189 398-610 39-237 (249)
381 PRK13657 cyclic beta-1,2-gluca 100.0 1.4E-27 3E-32 293.4 46.2 359 720-1088 20-378 (588)
382 PF00005 ABC_tran: ABC transpo 100.0 4.1E-31 8.8E-36 261.6 11.6 136 402-551 1-137 (137)
383 COG4674 Uncharacterized ABC-ty 100.0 2.1E-30 4.6E-35 252.6 14.7 214 383-610 5-236 (249)
384 PLN03073 ABC transporter F fam 100.0 3.1E-30 6.7E-35 316.7 18.0 220 383-609 177-431 (718)
385 KOG0061 Transporter, ABC super 100.0 3.5E-30 7.5E-35 311.5 16.9 218 382-609 24-260 (613)
386 TIGR01842 type_I_sec_PrtD type 100.0 9.6E-27 2.1E-31 283.1 45.7 314 762-1088 47-361 (544)
387 COG0488 Uup ATPase components 100.0 1.3E-29 2.9E-34 297.3 19.4 208 383-610 3-241 (530)
388 PRK10522 multidrug transporter 100.0 2.8E-26 6E-31 279.1 42.3 307 770-1088 57-366 (547)
389 cd03270 ABC_UvrA_I The excisio 100.0 7.9E-29 1.7E-33 265.6 16.4 192 398-602 7-226 (226)
390 cd03271 ABC_UvrA_II The excisi 100.0 5.2E-29 1.1E-33 268.8 14.4 194 400-604 9-261 (261)
391 COG4107 PhnK ABC-type phosphon 100.0 6E-28 1.3E-32 230.3 15.6 227 383-620 6-252 (258)
392 COG0488 Uup ATPase components 100.0 2.1E-27 4.6E-32 278.8 23.9 203 382-610 320-526 (530)
393 COG4586 ABC-type uncharacteriz 100.0 4.6E-28 9.9E-33 248.7 13.7 202 399-610 37-247 (325)
394 COG4133 CcmA ABC-type transpor 100.0 7.4E-28 1.6E-32 235.0 13.2 187 385-586 4-195 (209)
395 cd03278 ABC_SMC_barmotin Barmo 99.9 9E-28 2E-32 251.1 13.9 163 403-594 14-189 (197)
396 TIGR00954 3a01203 Peroxysomal 99.9 1.2E-24 2.5E-29 268.3 38.7 364 720-1088 97-495 (659)
397 COG4988 CydD ABC-type transpor 99.9 2.4E-23 5.2E-28 237.8 43.8 354 726-1088 7-364 (559)
398 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.2E-26 2.7E-31 246.9 12.9 192 383-598 5-211 (213)
399 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.9E-26 4.2E-31 251.4 13.4 191 384-594 4-234 (243)
400 COG4778 PhnL ABC-type phosphon 99.9 2.4E-26 5.3E-31 218.9 10.7 200 384-594 5-226 (235)
401 COG4987 CydC ABC-type transpor 99.9 2.2E-22 4.9E-27 225.6 42.4 296 784-1087 81-380 (573)
402 PF00664 ABC_membrane: ABC tra 99.9 9.7E-22 2.1E-26 216.9 39.5 272 62-336 2-274 (275)
403 KOG0059 Lipid exporter ABCA1 a 99.9 7.6E-25 1.7E-29 276.7 16.3 215 383-610 564-788 (885)
404 cd03240 ABC_Rad50 The catalyti 99.9 1E-24 2.2E-29 229.6 13.9 163 405-595 16-197 (204)
405 KOG0057 Mitochondrial Fe/S clu 99.9 4.3E-22 9.3E-27 223.4 35.2 317 763-1087 76-394 (591)
406 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.4E-24 2.9E-29 237.4 13.5 182 412-594 25-242 (251)
407 cd03274 ABC_SMC4_euk Eukaryoti 99.9 5.6E-25 1.2E-29 232.7 10.1 184 383-594 5-203 (212)
408 KOG0927 Predicted transporter 99.9 5.2E-25 1.1E-29 245.5 9.7 193 383-600 389-586 (614)
409 PRK00349 uvrA excinuclease ABC 99.9 7.4E-24 1.6E-28 263.6 19.8 102 511-612 818-930 (943)
410 KOG0056 Heavy metal exporter H 99.9 5.1E-23 1.1E-27 224.8 22.3 300 773-1087 271-580 (790)
411 PRK00635 excinuclease ABC subu 99.9 1.3E-23 2.8E-28 271.0 20.0 212 383-610 600-907 (1809)
412 COG4138 BtuD ABC-type cobalami 99.9 1.2E-24 2.7E-29 208.1 6.2 208 384-610 4-222 (248)
413 KOG0065 Pleiotropic drug resis 99.9 7.5E-24 1.6E-28 259.0 11.3 199 398-606 803-1018(1391)
414 COG1129 MglA ABC-type sugar tr 99.9 7.6E-23 1.6E-27 233.5 17.8 212 383-605 263-486 (500)
415 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.4E-23 3.1E-28 228.5 10.9 182 413-594 23-232 (247)
416 TIGR00630 uvra excinuclease AB 99.9 2.2E-22 4.7E-27 250.1 20.7 97 511-607 816-923 (924)
417 KOG0065 Pleiotropic drug resis 99.9 1.5E-21 3.3E-26 239.0 24.9 206 398-608 127-350 (1391)
418 COG3845 ABC-type uncharacteriz 99.9 2.8E-21 6E-26 215.5 19.5 216 383-606 257-489 (501)
419 PF00664 ABC_membrane: ABC tra 99.9 5.6E-19 1.2E-23 194.9 35.7 261 723-987 3-266 (275)
420 KOG0066 eIF2-interacting prote 99.9 2.5E-21 5.4E-26 208.7 13.7 192 383-600 586-781 (807)
421 KOG0927 Predicted transporter 99.9 3.7E-21 8E-26 214.9 15.1 213 381-610 73-310 (614)
422 KOG0062 ATPase component of AB 99.9 4.8E-21 1E-25 212.8 15.6 195 382-600 361-559 (582)
423 cd03276 ABC_SMC6_euk Eukaryoti 99.8 6E-21 1.3E-25 199.9 12.6 172 402-597 12-192 (198)
424 cd03239 ABC_SMC_head The struc 99.8 1.6E-20 3.5E-25 192.8 13.9 85 505-595 83-172 (178)
425 COG1245 Predicted ATPase, RNas 99.8 2.6E-20 5.6E-25 203.5 14.1 180 388-594 340-530 (591)
426 COG5265 ATM1 ABC-type transpor 99.8 7.7E-19 1.7E-23 191.1 23.5 302 781-1087 2-305 (497)
427 KOG0062 ATPase component of AB 99.8 1.1E-20 2.4E-25 210.0 8.8 200 381-610 78-286 (582)
428 cd01128 rho_factor Transcripti 99.8 1.1E-20 2.3E-25 202.9 6.9 200 406-623 10-230 (249)
429 COG4615 PvdE ABC-type sideroph 99.8 2.4E-16 5.1E-21 169.7 34.1 314 763-1088 50-366 (546)
430 COG4618 ArpD ABC-type protease 99.8 3.8E-16 8.2E-21 174.2 34.2 301 773-1088 75-379 (580)
431 KOG2355 Predicted ABC-type tra 99.8 2.5E-18 5.4E-23 169.3 15.0 210 381-607 11-235 (291)
432 cd03241 ABC_RecN RecN ATPase i 99.8 9.8E-19 2.1E-23 193.6 13.4 76 522-597 170-249 (276)
433 COG4170 SapD ABC-type antimicr 99.8 1.3E-18 2.9E-23 171.4 12.5 211 399-619 20-258 (330)
434 cd03277 ABC_SMC5_euk Eukaryoti 99.8 1.8E-18 3.9E-23 183.1 13.8 180 403-597 15-211 (213)
435 COG0178 UvrA Excinuclease ATPa 99.8 5.3E-18 1.1E-22 197.9 18.5 105 511-616 810-925 (935)
436 PRK00635 excinuclease ABC subu 99.8 7.5E-18 1.6E-22 218.2 20.4 210 401-611 1505-1798(1809)
437 cd03280 ABC_MutS2 MutS2 homolo 99.8 2E-18 4.4E-23 181.9 10.8 144 402-601 17-171 (200)
438 COG2401 ABC-type ATPase fused 99.7 1.5E-17 3.3E-22 179.6 14.5 199 379-599 353-588 (593)
439 cd03227 ABC_Class2 ABC-type Cl 99.7 2.2E-17 4.9E-22 167.7 11.0 135 406-595 15-155 (162)
440 COG1245 Predicted ATPase, RNas 99.7 2.6E-17 5.6E-22 180.3 11.2 190 388-594 79-287 (591)
441 cd03242 ABC_RecF RecF is a rec 99.7 3.9E-16 8.6E-21 172.2 15.1 188 402-598 12-269 (270)
442 cd03285 ABC_MSH2_euk MutS2 hom 99.7 2.4E-16 5.1E-21 167.9 10.6 153 398-603 16-175 (222)
443 cd00820 PEPCK_HprK Phosphoenol 99.6 1.6E-16 3.5E-21 145.6 5.5 76 399-482 2-77 (107)
444 TIGR00630 uvra excinuclease AB 99.6 8.4E-16 1.8E-20 191.7 12.6 95 516-610 481-584 (924)
445 PRK00349 uvrA excinuclease ABC 99.6 7.8E-16 1.7E-20 192.3 11.9 100 511-610 477-586 (943)
446 cd03243 ABC_MutS_homologs The 99.6 1.5E-15 3.2E-20 160.5 7.9 152 405-606 22-176 (202)
447 cd03283 ABC_MutS-like MutS-lik 99.6 2.3E-15 4.9E-20 157.7 8.9 138 399-587 14-154 (199)
448 TIGR00606 rad50 rad50. This fa 99.6 4.5E-15 9.9E-20 196.7 13.9 118 471-593 1153-1288(1311)
449 TIGR02858 spore_III_AA stage I 99.6 1.7E-14 3.7E-19 156.8 12.9 142 413-608 112-268 (270)
450 COG4178 ABC-type uncharacteriz 99.5 4.7E-11 1E-15 140.1 35.4 317 764-1087 89-435 (604)
451 KOG0066 eIF2-interacting prote 99.5 4.8E-14 1.1E-18 152.9 7.5 196 383-605 264-495 (807)
452 PF02463 SMC_N: RecF/RecN/SMC 99.5 2.3E-13 4.9E-18 146.1 12.0 169 403-593 16-211 (220)
453 PRK00064 recF recombination pr 99.5 1.3E-12 2.7E-17 149.9 17.4 76 521-598 272-359 (361)
454 cd03284 ABC_MutS1 MutS1 homolo 99.4 2.6E-13 5.5E-18 144.2 9.7 154 399-607 18-179 (216)
455 cd03282 ABC_MSH4_euk MutS4 hom 99.4 4.3E-13 9.4E-18 140.7 11.3 140 398-587 15-157 (204)
456 KOG0063 RNAse L inhibitor, ABC 99.4 6E-13 1.3E-17 145.0 11.1 181 390-595 342-532 (592)
457 PHA02562 46 endonuclease subun 99.4 5.1E-13 1.1E-17 164.2 7.2 105 492-598 433-555 (562)
458 PRK07721 fliI flagellum-specif 99.2 1.7E-10 3.7E-15 133.6 16.7 176 399-606 146-340 (438)
459 PTZ00132 GTP-binding nuclear p 99.2 2.5E-11 5.4E-16 129.8 7.6 44 526-569 156-204 (215)
460 TIGR00634 recN DNA repair prot 99.2 4E-11 8.6E-16 145.9 10.2 77 521-597 439-519 (563)
461 cd03281 ABC_MSH5_euk MutS5 hom 99.2 9E-11 2E-15 124.4 11.3 135 400-587 17-160 (213)
462 PRK10869 recombination and rep 99.2 6.5E-11 1.4E-15 142.5 9.9 76 522-597 430-509 (553)
463 smart00534 MUTSac ATPase domai 99.1 4.6E-11 1E-15 124.2 6.7 76 519-597 58-138 (185)
464 PRK13695 putative NTPase; Prov 99.1 4.9E-11 1.1E-15 123.0 5.3 82 517-601 73-156 (174)
465 PRK14079 recF recombination pr 99.1 1.3E-09 2.8E-14 124.5 17.3 76 521-601 262-346 (349)
466 TIGR00611 recf recF protein. A 99.1 8.5E-10 1.8E-14 126.3 14.6 63 521-585 274-345 (365)
467 KOG0063 RNAse L inhibitor, ABC 99.1 2E-10 4.4E-15 125.6 8.4 171 410-594 98-287 (592)
468 cd03287 ABC_MSH3_euk MutS3 hom 99.1 3.6E-10 7.8E-15 119.9 9.2 138 399-587 18-160 (222)
469 TIGR01069 mutS2 MutS2 family p 99.1 1.8E-10 4E-15 143.0 8.0 144 383-583 295-447 (771)
470 COG0178 UvrA Excinuclease ATPa 99.0 1.2E-09 2.6E-14 128.9 12.6 111 503-614 463-582 (935)
471 KOG0060 Long-chain acyl-CoA tr 99.0 8E-08 1.7E-12 110.0 25.3 308 762-1087 127-477 (659)
472 TIGR02788 VirB11 P-type DNA tr 99.0 7.6E-10 1.6E-14 124.4 8.4 143 405-608 137-280 (308)
473 PRK08533 flagellar accessory p 99.0 5.3E-09 1.1E-13 112.4 14.3 144 409-594 21-184 (230)
474 TIGR03238 dnd_assoc_3 dnd syst 98.9 6.5E-10 1.4E-14 126.6 4.5 67 400-469 20-87 (504)
475 PRK00409 recombination and DNA 98.9 2.7E-09 5.9E-14 133.1 9.6 137 401-587 317-456 (782)
476 PRK01156 chromosome segregatio 98.9 2.8E-09 6.1E-14 138.0 9.8 76 519-594 798-883 (895)
477 cd01124 KaiC KaiC is a circadi 98.9 1.2E-08 2.6E-13 106.5 12.4 84 511-594 60-163 (187)
478 PRK03918 chromosome segregatio 98.8 5E-09 1.1E-13 136.0 9.6 74 521-594 787-867 (880)
479 cd01131 PilT Pilus retraction 98.8 5.7E-09 1.2E-13 109.7 7.9 119 414-594 3-122 (198)
480 TIGR02168 SMC_prok_B chromosom 98.8 6.5E-09 1.4E-13 139.9 8.0 75 519-593 1086-1164(1179)
481 TIGR00618 sbcc exonuclease Sbc 98.8 1.2E-08 2.7E-13 133.3 10.3 76 521-596 949-1036(1042)
482 PRK13830 conjugal transfer pro 98.8 5.5E-08 1.2E-12 123.0 15.7 67 537-603 649-727 (818)
483 TIGR00767 rho transcription te 98.8 1.9E-08 4.1E-13 113.2 9.4 82 350-439 103-195 (415)
484 cd01120 RecA-like_NTPases RecA 98.8 5.9E-08 1.3E-12 98.5 12.1 129 414-584 1-140 (165)
485 PRK00300 gmk guanylate kinase; 98.7 2.1E-08 4.6E-13 106.3 8.0 78 410-496 3-92 (205)
486 PRK06793 fliI flagellum-specif 98.7 4.5E-08 9.7E-13 112.6 11.0 168 384-604 131-306 (432)
487 smart00382 AAA ATPases associa 98.7 2.5E-07 5.4E-12 91.0 14.4 117 411-580 1-125 (148)
488 PF06472 ABC_membrane_2: ABC t 98.7 5.4E-05 1.2E-09 84.2 34.2 215 66-286 34-252 (281)
489 PRK10733 hflB ATP-dependent me 98.7 4.3E-09 9.3E-14 129.5 1.2 171 232-437 32-210 (644)
490 TIGR02169 SMC_prok_A chromosom 98.7 2.8E-08 6E-13 133.6 8.8 74 521-594 1073-1150(1164)
491 cd03286 ABC_MSH6_euk MutS6 hom 98.6 8.3E-08 1.8E-12 101.7 8.5 138 398-586 16-158 (218)
492 PRK14257 phosphate ABC transpo 98.6 2.6E-08 5.6E-13 112.9 4.6 51 1037-1088 75-125 (329)
493 PRK06067 flagellar accessory p 98.6 4.8E-07 1E-11 98.1 14.2 137 408-583 21-167 (234)
494 PRK02224 chromosome segregatio 98.5 1.3E-07 2.7E-12 122.8 9.0 76 521-596 780-869 (880)
495 PRK12369 putative transporter; 98.5 0.0011 2.3E-08 74.8 38.9 241 107-362 67-320 (326)
496 PRK11098 microcin B17 transpor 98.5 0.00091 2E-08 76.9 38.5 240 107-363 142-395 (409)
497 PF13304 AAA_21: AAA domain; P 98.5 1E-07 2.3E-12 104.9 6.5 63 522-584 236-302 (303)
498 PRK10246 exonuclease subunit S 98.5 1.8E-07 3.9E-12 121.7 9.5 75 520-594 947-1031(1047)
499 PF09818 ABC_ATPase: Predicted 98.5 1.3E-06 2.8E-11 98.6 14.7 170 389-597 227-415 (448)
500 cd03248 ABCC_TAP TAP, the Tran 98.5 8.8E-08 1.9E-12 103.3 5.0 51 1038-1088 7-57 (226)
No 1
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.8e-168 Score=1517.33 Aligned_cols=1020 Identities=54% Similarity=0.885 Sum_probs=924.4
Q ss_pred CchHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1091)
Q Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1091)
..++.++++|..+.++.+++++++++++.++..|+..++++++++.+....+. ...+....+++.+++++++.++..|+
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~-~~~~~~~~~~l~~~~lg~~~~~~~~~ 90 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNK-IASSEVSKVALYFVYLGVGVFISGFI 90 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999988654322 22246677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1091)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 202 (1091)
+..||.+.++|...++|..+++.++|++++|||.+ .+|++.+++++|++.|++.+++.+..+++.+.++++++++.|+.
T Consensus 91 q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 91 QVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997 77999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 001371 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1091)
Q Consensus 203 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1091)
+|+++++++.+.|++++....+.+.+.+...+.++.+++..+.++|++.+||||.+|+.|+++.++|.+.+....+...+
T Consensus 170 ~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~ 249 (1228)
T KOG0055|consen 170 GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIK 249 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001371 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1091)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1091)
.+++.++..++..++.+.++++.+|+|+.++..+..++|.+++++..++.....+++..|.+..+..++.++.++++.++
T Consensus 250 ~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 250 KGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999888888899999999999999999999999999999
Q ss_pred cCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcE
Q 001371 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1091)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~ 442 (1091)
..|+++.....+.......|.|+|+||+|+||+||+.++|+|+||+||+||++||||||||||||+++||.|||+|++|+
T Consensus 330 ~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 330 RKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred CCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 99887665423334455678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCC
Q 001371 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1091)
Q Consensus 443 I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~ 522 (1091)
|.|||.|+++++.+|||++||.|.|+|.||++||+|||+||+|+++++++++|||++++++||..||+||||.|||+|.+
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q 489 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeec
Q 001371 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 523 LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~G 602 (1091)
|||||||||||||||++||+||||||||||||+++|+.+|++|++.++|||+|+||||||||++||+|+||++|+|+|+|
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQG 569 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCccccccccCCCCCC
Q 001371 603 THSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQ 682 (1091)
Q Consensus 603 t~~eL~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1091)
+|+||++. .|.|.+|++.|+...+.+....+.+..+....+. .... +.. ...+.. .... ..
T Consensus 570 ~h~ELi~~-~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~-------~~s~--~~~----~~~~~~-~~~~-~~--- 630 (1228)
T KOG0055|consen 570 THDELIAL-GGIYSSLVRLQELEKAAEDEEEEESLKEERSRSL-------KSSS--SSP----SLSRGS-NRSN-LL--- 630 (1228)
T ss_pred CHHHHHhc-cchHHHHHHHHhhhhhhhccccccchhhhhhhcc-------cccc--ccc----cccCCc-cccc-cc---
Confidence 99999999 5999999999976553321000000000000000 0000 000 000000 0000 00
Q ss_pred CccccCCCCCCCCCCCCccCCCchHHhHhhhCCChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCch-hhhhhHH
Q 001371 683 FADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH-ELKKDSR 761 (1091)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 761 (1091)
. ...++++..+.. .+.....+++++..++.++|+++++|++++++.|+.+|++++.++...+.+..+++ .+.....
T Consensus 631 ~-~~~~~e~~~~~~--~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~ 707 (1228)
T KOG0055|consen 631 S-VKPEGEDPEEPV--SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVR 707 (1228)
T ss_pred c-cccccccccccc--ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 0 000000000000 11114567888889999999999999999999999999999999999999986543 3444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhH
Q 001371 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841 (1091)
Q Consensus 762 ~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l 841 (1091)
.|..+|+++|++++++.+++.++|.++|+++++|+|.++|++++|+|++|||++.|+ |+|.+|+++|...+...+...+
T Consensus 708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl 786 (1228)
T KOG0055|consen 708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRL 786 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccch
Q 001371 842 ARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE 921 (1091)
Q Consensus 842 ~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e 921 (1091)
..+++++..++++++++++++|+++++++++.|++++..+++.+++....+....+..+++.++.|++++++||++|+.|
T Consensus 787 ~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e 866 (1228)
T KOG0055|consen 787 SLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAE 866 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhc
Q 001371 922 EKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSS 1001 (1091)
Q Consensus 922 ~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1091)
++|++.|.+.++.+.+.+.|++.+.|..||++++++++.++++||||.+|+..|.+++.+++.+++++.+++.++++..+
T Consensus 867 ~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s 946 (1228)
T KOG0055|consen 867 EKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASS 946 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCC
Q 001371 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQF 1081 (1091)
Q Consensus 1002 ~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG 1081 (1091)
+.|++.++..|+.++++++++++++++..+.+...++.+|+|+|+||+|+||+||+.+||+|+||+|++|||+|||||||
T Consensus 947 ~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SG 1026 (1228)
T KOG0055|consen 947 YAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSG 1026 (1228)
T ss_pred hCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCC
Confidence 99999999999999999999999888766444445668999999999999999999999999999999999999999999
Q ss_pred CCcccc
Q 001371 1082 HSLKQL 1087 (1091)
Q Consensus 1082 ~~~~~~ 1087 (1091)
|||||.
T Consensus 1027 sGKSTv 1032 (1228)
T KOG0055|consen 1027 SGKSTV 1032 (1228)
T ss_pred CCHHHH
Confidence 999985
No 2
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-137 Score=1282.78 Aligned_cols=959 Identities=20% Similarity=0.245 Sum_probs=729.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 65 SIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLK 144 (1091)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 144 (1091)
.++..+...+....|.++..+++.+..+..+ ......+++.+++..++..++.....+...+.|.|+...+-..+|+
T Consensus 207 ~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~---~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~ 283 (1381)
T KOG0054|consen 207 GIFLFLRDLAGFVGPLLLKKLILFFSEKRLP---LNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYR 283 (1381)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHhcCCCcc---cchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3333344444667788999999987544111 1222334444555555555555555566677888888888889999
Q ss_pred HHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001371 145 TILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVM 224 (1091)
Q Consensus 145 ~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~ 224 (1091)
|.++++...-... ++|+++|.|++|++++.++....+..|..++..+++...++..++|. +++.++++.+++.+..++
T Consensus 284 K~L~ls~~~~~~~-t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~s-a~~G~~~~il~~p~n~~~ 361 (1381)
T KOG0054|consen 284 KALRLSNSARGET-TVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPS-ALAGVAVMVLLIPLNSFL 361 (1381)
T ss_pred hhhcCchhhccCC-CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHH
Confidence 9999988776554 89999999999999999999999999999999999999999999985 455556666777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 001371 225 AIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIG----LGMVMLIVFC 300 (1091)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 300 (1091)
++++++.+.+.++..|+|.+.++|.++|||+||+|+||+.|.++.++..++..+...+.....++. ...+.+++++
T Consensus 362 a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~ 441 (1381)
T KOG0054|consen 362 AKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVV 441 (1381)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887776666555555554443 3344444444
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCC
Q 001371 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDI 380 (1091)
Q Consensus 301 ~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1091)
++++++. ...+.+++...|+.+.+...+..|+..+...+..+.++.++.+|+.+++..++..+. .......++.
T Consensus 442 tF~~~v~-----~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~-~~~~~~~~~~ 515 (1381)
T KOG0054|consen 442 TFVVFVL-----LLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPD-SVERSPDEAG 515 (1381)
T ss_pred HHHHHhh-----ccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcc-ccccCCCCCC
Confidence 4444431 234456666666666666666678877777778888999999999999876543222 1111122233
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhh
Q 001371 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1091)
Q Consensus 381 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~ 460 (1091)
+..|+++|.+|+|++....+.|+||||+|++|+++|||||+|||||||+++|+|+++..+|++.++|
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g------------- 582 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG------------- 582 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------
Confidence 4579999999999864445699999999999999999999999999999999999999999999999
Q ss_pred ceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
.+|||||+||||||||||||+||+| +++++|++++++|+|++|++.||+||.|+|||||.||||||||||+||||+|+|
T Consensus 583 siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ 661 (1381)
T KOG0054|consen 583 SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQD 661 (1381)
T ss_pred eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhcc
Confidence 7999999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHH-HHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHH
Q 001371 541 PRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~-~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~ 619 (1091)
+|||+||||+||||+|+.+ .+++||+..+++||+|+|||+++++++||+|+||+||+|+++|||+||++. ++.|.++.
T Consensus 662 adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~-~~~~~~l~ 740 (1381)
T KOG0054|consen 662 ADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS-GGDFAELA 740 (1381)
T ss_pred CCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc-chhHHHHh
Confidence 9999999999999999666 668899999999999999999999999999999999999999999999987 78888874
Q ss_pred HHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCccccccccCCCCCCCccccCCCCCCCCCCCC
Q 001371 620 RLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTE 699 (1091)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1091)
.....+.+... ........ ..... .+. +... ..+...+.. . ......++..++++.
T Consensus 741 ~~~~~~~~~~~--~~~~~~~~--~~~~~-------~~~--~~~~---~~~~~~~~~------~--~~~~~~~~~~~~ee~ 796 (1381)
T KOG0054|consen 741 HEEESEQEEEA--SEKDLESG--ESSRE-------SES--RSLE---SLSSEEEKS------K--DEKEEEDKLVQEEER 796 (1381)
T ss_pred hccchhhcccc--cccccccc--ccccc-------hhh--hhhh---hhccccccc------c--cccchhhHHHHHHHH
Confidence 32221111110 00000000 00000 000 0000 000000000 0 000000000011111
Q ss_pred ccCCCchHHhHhhhCC-ChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHH
Q 001371 700 EVAPEVPTRRLAYLNK-PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLS 778 (1091)
Q Consensus 700 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~ 778 (1091)
+.....+..|..|+.. .++...++.+++.+..+......++|+++|.+........ ..+..+|+++|++++++..++.
T Consensus 797 ~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~-~~~~~~~~~vY~~l~~~~~~~~ 875 (1381)
T KOG0054|consen 797 ETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT-TVSTSFYLGVYALLGVASSLLT 875 (1381)
T ss_pred hcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-CCCcchHHHHHHHHHHHHHHHH
Confidence 3334445667888877 3444444445556666677777899999998754321110 0245679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001371 779 PAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA 858 (1091)
Q Consensus 779 ~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~ 858 (1091)
+++++++..+|.++|++||++|+++|+|+||+||| +||+|||+||||||++.+|..+|..+..++++++.+++.++++
T Consensus 876 ~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi 953 (1381)
T KOG0054|consen 876 LLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVI 953 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhH---HHHHHccchHhhhccchHHHHHHHHHHhhhh
Q 001371 859 FTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQV---ANDAVGSIRTVASFCAEEKVMQLYKKKCEAP 935 (1091)
Q Consensus 859 ~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~ 935 (1091)
+++.|+ ++++++|+.+++++++++|..++|+++|++..++||+ ++|+++|+.|||||+.|++|.++++.++|.+
T Consensus 954 ~~~~P~---fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~ 1030 (1381)
T KOG0054|consen 954 SYVTPW---FLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDEN 1030 (1381)
T ss_pred hHHhHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhh
Confidence 999874 6778899999999999999999999999999999996 6699999999999999999999999999999
Q ss_pred HHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHH-HHHHhcccccHHH
Q 001371 936 MKT------GIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIG-ISQSSSFSSDSNK 1008 (1091)
Q Consensus 936 ~~~------~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 1008 (1091)
++. +.||..++...+|....+..+++++.. ..+..+.+ +....++.++...+ +........+.+.
T Consensus 1031 ~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~-------~~~~~~~g-~vGLslsyal~lt~~l~~~vR~~~elEn 1102 (1381)
T KOG0054|consen 1031 SRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL-------PSGLISPG-LVGLSLSYALQLTGLLQWLVRQSSELEN 1102 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------cCCCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 874 555655555555555554444433321 11112111 12222223332222 2223345677778
Q ss_pred HHHHHHHHHHHHcCCCCCC--CCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccc
Q 001371 1009 AKSAAASIFAIIDRESKID--PSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQ 1086 (1091)
Q Consensus 1009 ~~~aa~~i~~~i~~~~~~~--~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~ 1086 (1091)
...+.+|+.++.+.+++.+ .++..|++.||.+|+|+|+|+++||++..+ +|||||||+|+|||+|||||.+|||||+
T Consensus 1103 ~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp-~VLk~is~~I~p~eKVGIVGRTGaGKSS 1181 (1381)
T KOG0054|consen 1103 NMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLP-LVLKGISFTIKPGEKVGIVGRTGAGKSS 1181 (1381)
T ss_pred cchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCc-chhcCceEEEcCCceEEEeCCCCCCHHH
Confidence 8888889988887555411 122224567888999999999999965422 4999999999999999999999999999
Q ss_pred cc
Q 001371 1087 LT 1088 (1091)
Q Consensus 1087 ~~ 1088 (1091)
|+
T Consensus 1182 L~ 1183 (1381)
T KOG0054|consen 1182 LI 1183 (1381)
T ss_pred HH
Confidence 86
No 3
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.4e-127 Score=1251.27 Aligned_cols=1032 Identities=26% Similarity=0.432 Sum_probs=826.6
Q ss_pred CCchHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1091)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1091)
++.++..+|+|..+.++..++++++++++.+++.|++|++++.++|.+... + .+..+++.+++++++.+++.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~-~------~~~~~~~~~~~~~i~~~~~~~ 115 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG-E------NVNDIIFSLVLIGIFQFILSF 115 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c------hHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999887787888999999999999999999999999976321 1 122344556677788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1091)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 201 (1091)
++.+++.+++.++..++|.++|++++++|+.|||+. ++|++++++++|++.++..+...+..++..++.++++++++++
T Consensus 116 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~ 194 (1466)
T PTZ00265 116 ISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF 194 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 8899999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 001371 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1091)
Q Consensus 202 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1091)
++|.+++++++++|+++++..++.+++++..++.++..++..+.+.|+++||++||+|+.|+.+.++|.+......+...
T Consensus 195 ~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~ 274 (1466)
T PTZ00265 195 KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL 274 (1466)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888888999999999999999999999999999999999999999899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEE--------GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1091)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~--------~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 353 (1091)
+.....++..++..++.++++++++|+|++++..| .+++|.+++++.+.+.....+..+.+.+..++.+..+
T Consensus 275 k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a 354 (1466)
T PTZ00265 275 KANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEA 354 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888899999999999999886 5788999888777766666777778888999999999
Q ss_pred HHHHHHHhccCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 001371 354 AFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1091)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~ 433 (1091)
+.|++++++.+++.+... .+...+. .+.|+|+||+|+||++++.++|+|+||+|++||++|||||||||||||+++|+
T Consensus 355 ~~ri~~ii~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 355 TNSLYEIINRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred HHHHHHHHcCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999999877654211 1111122 24799999999998655567999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEE-CCccccCCChHHHhhceeEEeccCccccccHHHHhccCCC---------------------------
Q 001371 434 RFYDPQAGEVLI-DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--------------------------- 485 (1091)
Q Consensus 434 g~~~~~~G~I~i-dg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~--------------------------- 485 (1091)
|+|+|++|+|.+ ||+|+++++.+++|++|+||+|+|.||++||+|||.+|.+
T Consensus 433 gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1466)
T PTZ00265 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRN 512 (1466)
T ss_pred HhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccc
Confidence 999999999999 5799999999999999999999999999999999999742
Q ss_pred ------------------------------CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 486 ------------------------------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 486 ------------------------------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+++++++++|++.+++++||.+||+||||.+|++|.+|||||||||+|||
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 513 SCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred cccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhccCeEEEEeCC-----------------
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRG----------------- 596 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G----------------- 596 (1091)
|++++|+|||||||||+||+++|+.|++.|+++. +++|+|+||||+++++.||+|+||++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999886 489999999999999999999999986
Q ss_pred ------------------------------EEeeecChhHHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhh
Q 001371 597 ------------------------------KIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLR 646 (1091)
Q Consensus 597 ------------------------------~Ive~Gt~~eL~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1091)
+|+|+|||+||++..+|.|+.|++.|............+...........
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYK 752 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccc
Confidence 59999999999984489999999887543221100000000000000000
Q ss_pred cccccccccccccCCCCCCCCCccccccccCCCCCCCccccCCCCCCCCCCC-CccCCCc-hHHh-HhhhCCChhHHHHH
Q 001371 647 HSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPT-EEVAPEV-PTRR-LAYLNKPEIPVILA 723 (1091)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~~~~~~~~~~~~ 723 (1091)
.............. ... ...................+.....+....... +...+.. .... +.++ .+.+..+++
T Consensus 753 ~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 829 (1466)
T PTZ00265 753 DSERGYDPDEMNGN-SKH-ENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREI-FSYKKDVTI 829 (1466)
T ss_pred cccccccccccccc-ccc-cccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHH-HHHHHHHHH
Confidence 00000000000000 000 000000000000000000000000000000000 0000011 1111 1111 122233667
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 724 GTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEK 803 (1091)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~ 803 (1091)
+++++++.++.+|++.+.++.+++.++.. .........|..++++++++.+++.+++.+++.+++.++..+||.++|++
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ 908 (1466)
T PTZ00265 830 IALSILVAGGLYPVFALLYAKYVSTLFDF-ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFEN 908 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888999999999999999876532 22223355688888999999999999999999999999999999999999
Q ss_pred HHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001371 804 VIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQ 883 (1091)
Q Consensus 804 vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~ 883 (1091)
++++|++|||++.+++|++++|+++|++.+...+...+..++..++.++++++++++.+|++++++++++|++...+..+
T Consensus 909 ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~ 988 (1466)
T PTZ00265 909 ILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIR 988 (1466)
T ss_pred HHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997668999999999999999999999999999999999999999999999999888766555554433322
Q ss_pred HHHHhhhhHHH----------------HHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHH
Q 001371 884 MKFMKGFSADA----------------KMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1091)
Q Consensus 884 ~~~~~~~~~~~----------------~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~ 947 (1091)
.+... .++.+ +......+..++|++.|++|||+|+.|++|.++|.+..+...+...+.....+
T Consensus 989 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1466)
T PTZ00265 989 ARLTA-NKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNS 1067 (1466)
T ss_pred HHHHH-HHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 11111 11133446689999999999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCC
Q 001371 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID 1027 (1091)
Q Consensus 948 ~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~ 1027 (1091)
.+.++++.+..+.+++.+|+|+.++..|.++.++++.++.++.++...+....++.++...+..++.+++.+++.+++++
T Consensus 1068 ~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~ 1147 (1466)
T PTZ00265 1068 MLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNID 1147 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCC
Confidence 99999999888889999999999999999999998887766666555566777888999999999999999998765443
Q ss_pred CCCCCCCc---ccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1028 PSDESGTI---LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1028 ~~~~~~~~---~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
..+..+.. +++.+|.|+|+||+|+||+||+.+||+|+||+|+|||++|||||||||||||-
T Consensus 1148 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~ 1211 (1466)
T PTZ00265 1148 VRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVM 1211 (1466)
T ss_pred CCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHH
Confidence 22111111 22357999999999999988877899999999999999999999999999973
No 4
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.4e-118 Score=1174.15 Aligned_cols=965 Identities=16% Similarity=0.194 Sum_probs=683.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRG 140 (1091)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 140 (1091)
++++.++.++..++....|++++.+++.+... +. .. ... .+++.+++..++..++.....+...+++.++...++.
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~-~~-~~-~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~ 378 (1622)
T PLN03130 303 FWLGGFFKIGNDLSQFVGPLLLNLLLESMQNG-EP-AW-IGY-IYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVA 378 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Cc-ch-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666777778888999999876432 11 11 111 1111111111122222211222245678888899999
Q ss_pred HHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001371 141 LYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMS 220 (1091)
Q Consensus 141 ~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~ 220 (1091)
.+|+|+++++..++++. ++|+++|++++|++++++++...+..|..++..+++.+++...++|. +++.++++.+.+.+
T Consensus 379 ~i~~k~L~l~~~~~~~~-~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~-~l~g~~v~~l~~~l 456 (1622)
T PLN03130 379 AVFRKSLRLTHEGRKKF-TSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVA-SLIGSLMLVLMFPI 456 (1622)
T ss_pred HHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999776 89999999999999999998665555555554444444434344443 22222233344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 221 GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300 (1091)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1091)
..++.++.++..++.++..+++.+.++|.++||++||+|+||+.+.+++.+..++..+...+.....++...+.....
T Consensus 457 ~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~-- 534 (1622)
T PLN03130 457 QTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIP-- 534 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 556777788888888899999999999999999999999999999999988877766655555554444333222211
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCC
Q 001371 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDI 380 (1091)
Q Consensus 301 ~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1091)
..+.++++|++++..|.++++.+++++.+...+..|+..+...+..+..+..+.+|+.++++.+++.+... .. ....
T Consensus 535 ~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~--~~-~~~~ 611 (1622)
T PLN03130 535 VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN--PP-LEPG 611 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC--Cc-ccCC
Confidence 13345567888888999999999998877777778888888888999999999999999997654322111 10 1111
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-cEEEECCccccCCChHHHh
Q 001371 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLIDGINLKEFQLQWIR 459 (1091)
Q Consensus 381 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~-G~I~idg~~i~~~~~~~lr 459 (1091)
.+.|+|+|++|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++ |+|.+.|
T Consensus 612 ~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~------------ 679 (1622)
T PLN03130 612 LPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG------------ 679 (1622)
T ss_pred CCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC------------
Confidence 346999999999985445689999999999999999999999999999999999999999 9998655
Q ss_pred hceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
+|+||||+||||+|||||||+||+| ++++++++|++.|+|++||+.||+||+|+|||+|.+||||||||||||||+|+
T Consensus 680 -~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~ 757 (1622)
T PLN03130 680 -TVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS 757 (1622)
T ss_pred -eEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 8999999999999999999999998 68999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHH-HHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHH
Q 001371 540 DPRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i-~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l 618 (1091)
|||||||||||||||++++++| ++++++.+++||+|+||||+++++.||+|++|++|+|+|+|+|+||+++ ++.|+++
T Consensus 758 ~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~-~~~~~~l 836 (1622)
T PLN03130 758 NSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-GPLFQKL 836 (1622)
T ss_pred CCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc-chhHHHH
Confidence 9999999999999999999866 6788888889999999999999999999999999999999999999987 7889988
Q ss_pred HHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCccccccccCCCCCCCccccCCCCCCCCCCC
Q 001371 619 IRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPT 698 (1091)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1091)
++.+...++..+.... + .... ... . .. ..... .. ........ +.+ ... ......+++
T Consensus 837 ~~~~~~~~~~~~~~~~-~-~~~~-~~~-~---~~------~~~~~--~~----~~~~~~~~--~~~-~~~-~~~~~~~e~ 893 (1622)
T PLN03130 837 MENAGKMEEYVEENGE-E-EDDQ-TSS-K---PV------ANGNA--NN----LKKDSSSK--KKS-KEG-KSVLIKQEE 893 (1622)
T ss_pred HHhccccccccccccc-c-cccc-ccc-c---cc------ccccc--cc----cccccccc--ccc-ccc-chhhhhHHH
Confidence 8654322111110000 0 0000 000 0 00 00000 00 00000000 000 000 000000011
Q ss_pred CccCCCchHHhHhhhCCChhH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHH
Q 001371 699 EEVAPEVPTRRLAYLNKPEIP-VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLL 777 (1091)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~ 777 (1091)
.+.+...+..|..|+...+.. .+++.+++.++.........+|++.|.+..... .....+|+++|++++++..++
T Consensus 894 ~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~----~~~~~~~~~i~~~l~~~~~i~ 969 (1622)
T PLN03130 894 RETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK----THGPLFYNLIYALLSFGQVLV 969 (1622)
T ss_pred HhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC----CCchhHHHHHHHHHHHHHHHH
Confidence 111222345566676554432 323333333444444455677888887643221 112356888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 001371 778 SPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLII 857 (1091)
Q Consensus 778 ~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~ 857 (1091)
.+++.+++.+.+.+++++||+++|++++|+|++||| .||+|+|+|||++|++.+|..+|..+..++..++.+++.+++
T Consensus 970 ~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~ 1047 (1622)
T PLN03130 970 TLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVL 1047 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 799999999999999999999999999999999999999988
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh---HHHHHHccchHhhhccchHHHHHHHHHHhhh
Q 001371 858 AFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQ---VANDAVGSIRTVASFCAEEKVMQLYKKKCEA 934 (1091)
Q Consensus 858 ~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~ 934 (1091)
+++++|+. +++++|+.+++++++.+|.+..++.+|.+...++| +++|++.|++|||||++|++|.+.+.+..+.
T Consensus 1048 i~~~~~~~---~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~ 1124 (1622)
T PLN03130 1048 IGIVSTIS---LWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDN 1124 (1622)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHH
Confidence 88887743 44556666666677777777888888887766665 5789999999999999999999999998887
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhccC-CcCH----HHHHHHHHHHHHHH-HHHHHHhcccccHH
Q 001371 935 PMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAG-ARLVEDG-KATF----SDVFKVFFSLTMTA-IGISQSSSFSSDSN 1007 (1091)
Q Consensus 935 ~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g-~~li~~g-~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1007 (1091)
+.+.... ......|+++...++..+ ..+++ ...+..+ .... ...+...++..+.. ..+..........+
T Consensus 1125 ~~~~~~~-~~~~~~wl~~~l~~~~~~---~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e 1200 (1622)
T PLN03130 1125 NIRFTLV-NMSSNRWLAIRLETLGGL---MIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAE 1200 (1622)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654322 222223333333222211 11111 1112211 1110 11111112221111 11222233345667
Q ss_pred HHHHHHHHHHHHHcCCCCCCCC--CCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCcc
Q 001371 1008 KAKSAAASIFAIIDRESKIDPS--DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLK 1085 (1091)
Q Consensus 1008 ~~~~aa~~i~~~i~~~~~~~~~--~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~ 1085 (1091)
....+..|+.++++.+++.+.. ...+...||.+|.|+|+||+|+|+++. ++|||||||+|+|||+|||||+||||||
T Consensus 1201 ~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~VL~~is~~I~~GekVaIVGrSGSGKS 1279 (1622)
T PLN03130 1201 NSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFEISPSEKVGIVGRTGAGKS 1279 (1622)
T ss_pred HHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-CceecceeEEEcCCCEEEEECCCCCCHH
Confidence 7888888998888765443221 111222456789999999999996432 2699999999999999999999999999
Q ss_pred ccc
Q 001371 1086 QLT 1088 (1091)
Q Consensus 1086 ~~~ 1088 (1091)
+|.
T Consensus 1280 TLl 1282 (1622)
T PLN03130 1280 SML 1282 (1622)
T ss_pred HHH
Confidence 985
No 5
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.9e-117 Score=1169.17 Aligned_cols=963 Identities=16% Similarity=0.192 Sum_probs=683.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRG 140 (1091)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 140 (1091)
++++.++.++..++....|++++.+++.+..+ +.. . ....+++.+++..++..++.....+...+.+.++...++.
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~-~~~-~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~ 378 (1495)
T PLN03232 303 FWLGGIFKIGHDLSQFVGPVILSHLLQSMQEG-DPA-W--VGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVA 378 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccc-c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556667777778889999999976432 111 1 1111222222222223333222233346778888899999
Q ss_pred HHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001371 141 LYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMS 220 (1091)
Q Consensus 141 ~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~ 220 (1091)
.+|+|+++++..++++. ++|+++|++++|++++++.+...+..+..++..+++.+++...++|.. ++.++++.+++.+
T Consensus 379 ~i~~k~l~l~~~~~~~~-~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~-l~~~~v~~l~~pl 456 (1495)
T PLN03232 379 AIFHKSLRLTHEARKNF-ASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVAS-LFGSLILFLLIPL 456 (1495)
T ss_pred HHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHH
Confidence 99999999999999776 899999999999999999875444444444333333333222233321 1122222233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 221 GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300 (1091)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1091)
..++.++.++..++.++..+++.+.++|.++||++||+|+||+.+.+++++..++..+...+.....++...+.... .
T Consensus 457 ~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~ 534 (1495)
T PLN03232 457 QTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSI--P 534 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 55677888888889999999999999999999999999999999999999888877777666665554433322111 1
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCC
Q 001371 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDI 380 (1091)
Q Consensus 301 ~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1091)
..+.++++|.+++..+.++++.+++++.+......|+..+...+..+..+..+.+|+.++++.+++.+... ......
T Consensus 535 ~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~---~~~~~~ 611 (1495)
T PLN03232 535 VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN---PPLQPG 611 (1495)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc---CCcCCC
Confidence 22334677888888999999999998888777788888888888999999999999999997665422111 111112
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhh
Q 001371 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1091)
Q Consensus 381 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~ 460 (1091)
.+.|+|+|++|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|.+. ++|+
T Consensus 612 ~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~ 679 (1495)
T PLN03232 612 APAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRG 679 (1495)
T ss_pred CCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecC
Confidence 3479999999999864456899999999999999999999999999999999999999998763 3567
Q ss_pred ceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
+||||||+||||+|||||||+||+| ++++++++|++.|++++|++.||+||||+|||+|.+||||||||||||||+|+|
T Consensus 680 ~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 758 (1495)
T PLN03232 680 SVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1495)
T ss_pred cEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999986 799999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHH-HHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHH
Q 001371 541 PRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i-~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~ 619 (1091)
||||||||||||||+++++++ +++++..+++||+|+||||+++++.||+|++|++|+|+|+|+|+||+++ ++.|++++
T Consensus 759 ~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~-~~~~~~l~ 837 (1495)
T PLN03232 759 SDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKKLM 837 (1495)
T ss_pred CCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-chhHHHHH
Confidence 999999999999999999866 5667777789999999999999999999999999999999999999987 88999988
Q ss_pred HHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCccccccccCCCCCCCccccCCCCCCCCCCCC
Q 001371 620 RLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTE 699 (1091)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1091)
+.+...++..+. . +..+ ...... ... +.. .+. +..... . +.+.. .....++++.
T Consensus 838 ~~~~~~~~~~~~-~--~~~~----~~~~~~----~~~--~~~----~~~-~~~~~~------~-~~~~~-~~~~~~~e~~ 891 (1495)
T PLN03232 838 ENAGKMDATQEV-N--TNDE----NILKLG----PTV--TID----VSE-RNLGST------K-QGKRG-RSVLVKQEER 891 (1495)
T ss_pred Hhcccccccccc-c--cccc----cccccc----ccc--ccc----ccc-cccccc------c-ccccc-hhhhhhHHHH
Confidence 765422111100 0 0000 000000 000 000 000 000000 0 00000 0000000111
Q ss_pred ccCCCchHHhHhhhCCChh-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHH
Q 001371 700 EVAPEVPTRRLAYLNKPEI-PVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLS 778 (1091)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~ 778 (1091)
+.+...+..|..|+...+. +++.+.+++.+...+......+|++.|.+..... .....+|+++|++++++..++.
T Consensus 892 ~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~----~~~~~~~l~~y~~l~~~~~~~~ 967 (1495)
T PLN03232 892 ETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPK----SYSPGFYIVVYALLGFGQVAVT 967 (1495)
T ss_pred hcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC----CCCcchHHHHHHHHHHHHHHHH
Confidence 1222234556777765443 3333333333344444445677888777532110 1124578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001371 779 PAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA 858 (1091)
Q Consensus 779 ~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~ 858 (1091)
+++.+++.+.+.+++++||++++++++|+|++||| .+|+|+|+|||++|++.+|..++..+..++..++.++++++++
T Consensus 968 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~ 1045 (1495)
T PLN03232 968 FTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALI 1045 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 7899999999999999999999999999999999888888887
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh---HHHHHHccchHhhhccchHHHHHHHHHHhhhh
Q 001371 859 FTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQ---VANDAVGSIRTVASFCAEEKVMQLYKKKCEAP 935 (1091)
Q Consensus 859 ~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~ 935 (1091)
++++|. .+++++|+.+++++++.++.+..++.+|.+..+++| +++|++.|++|||+|+.+++|.+.+.+..+.+
T Consensus 1046 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~ 1122 (1495)
T PLN03232 1046 GTVSTI---SLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNN 1122 (1495)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHH
Confidence 777653 344456666666667777777777788777776665 47899999999999999999999999988877
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhc-cCCcC----HHHHHHHHHHHHHHH-HHHHHHhcccccHHH
Q 001371 936 MKTGIRQGMVSGGGFGASFFLLFAFYAASFYAG-ARLVE-DGKAT----FSDVFKVFFSLTMTA-IGISQSSSFSSDSNK 1008 (1091)
Q Consensus 936 ~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g-~~li~-~g~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 1008 (1091)
.+..... .....|+++....+.. +..+++ ...+. .+... +..++...+...... ..+............
T Consensus 1123 ~~~~~~~-~~~~~wl~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~ 1198 (1495)
T PLN03232 1123 IRFTLAN-TSSNRWLTIRLETLGG---VMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAEN 1198 (1495)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654322 2222333333322211 111221 11111 22211 111121122221111 122333444567777
Q ss_pred HHHHHHHHHHHHcCCCCCCCC--CCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccc
Q 001371 1009 AKSAAASIFAIIDRESKIDPS--DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQ 1086 (1091)
Q Consensus 1009 ~~~aa~~i~~~i~~~~~~~~~--~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~ 1086 (1091)
+..+..|+.++++.+++.+.. ...+...||.+|.|+|+||+|+|+++ .++||||+||+|+|||++||||+|||||||
T Consensus 1199 ~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKST 1277 (1495)
T PLN03232 1199 SLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSS 1277 (1495)
T ss_pred HHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHH
Confidence 788888999988765543221 11122235668999999999999543 236999999999999999999999999999
Q ss_pred cc
Q 001371 1087 LT 1088 (1091)
Q Consensus 1087 ~~ 1088 (1091)
|.
T Consensus 1278 L~ 1279 (1495)
T PLN03232 1278 ML 1279 (1495)
T ss_pred HH
Confidence 84
No 6
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-116 Score=1008.43 Aligned_cols=576 Identities=39% Similarity=0.643 Sum_probs=540.5
Q ss_pred chHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1091)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1091)
..+++++.|+++.++ .+..+.++.++..+...+.|.+.|+++|.+....+. ...+...++.+.++.++.+++++++
T Consensus 133 ~~~~rl~~l~~~~~~-~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~---~~~~~~~~~~l~~l~~~~a~~~~~r 208 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWK-WLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS---ADALKRACTILLGLFLIGALANAIR 208 (716)
T ss_pred hHHHHHHHHhchhHH-HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999987644 566777777788888889999999999987651111 2344556667778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001371 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1091)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 203 (1091)
.+++...++++..++|.++|+++++++++|||.+ .+||+++|++.|++.+.+.+...+...+.+++..++++.+|++++
T Consensus 209 ~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S 287 (716)
T KOG0058|consen 209 GGLLQYAGERVVARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLS 287 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 9999999999999999999999999999999987 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001371 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1091)
Q Consensus 204 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1091)
|.|+++.++.+|+++++.++++++.++..++.|++.++.++..+|.+.+|||||+|+.|+.+.++|.+..++..+...|.
T Consensus 288 ~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~ 367 (716)
T KOG0058|consen 288 WRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKE 367 (716)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001371 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1091)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1091)
....+++.....+......+.++++|++++..|.+|.|++.+|+.|......++..+...+..+.++..++.|++|+++.
T Consensus 368 a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 368 AVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 99999998888899999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred CCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE
Q 001371 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1091)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I 443 (1091)
+|.++... ...+....|.|+|+||+|+||++|+.+||||+||+|+|||+||+||||||||||+++||+|||+|++|+|
T Consensus 448 ~P~i~~~G--~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 448 KPRIPLTG--TLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCCCCCC--ccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 99876542 2222356789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCC
Q 001371 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1091)
Q Consensus 444 ~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~L 523 (1091)
.+||+||++++.++||++||+|.|||.||++||+|||.||.+++++|++++|+++|++|+||..+|+||||.|||+|.+|
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecC
Q 001371 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 524 SGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 603 (1091)
||||||||||||||+|||.||||||||||||+++|..||++|.+.+++||||+|||||||+++||+|+|+|+|+|+|.|+
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCchhHHHHHHHhhcc
Q 001371 604 HSKLVEDPEGAYSQLIRLQEANK 626 (1091)
Q Consensus 604 ~~eL~~~~~~~y~~l~~~~~~~~ 626 (1091)
|+||+++++|.|++|++.|....
T Consensus 686 h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred HHHHhhCcccHHHHHHHHhcccC
Confidence 99999997799999999886543
No 7
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1e-111 Score=1118.03 Aligned_cols=993 Identities=16% Similarity=0.157 Sum_probs=702.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGL 141 (1091)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 141 (1091)
+.+++..++..++....|++++.+++.+..+.++ . .....++..++++.++..++...+.+...+.+.++...++..
T Consensus 320 l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~ 396 (1522)
T TIGR00957 320 LMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAP-D--WQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGA 396 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667778888999999976433211 1 111112223333334444554444455677899999999999
Q ss_pred HHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001371 142 YLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSG 221 (1091)
Q Consensus 142 ~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~ 221 (1091)
+|+|+++++...+++. ++|+++|++++|++++.+.....+..|..++..+++.++++...+|. +++.++++++++.+.
T Consensus 397 iy~K~L~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~-~l~~l~~~~~~~~~~ 474 (1522)
T TIGR00957 397 VYRKALVITNSARKSS-TVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPS-VLAGVAVMVLMVPLN 474 (1522)
T ss_pred HHHHHHhCChhhcCCC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHH
Confidence 9999999999999876 89999999999999999987666665655555555544444445553 345555556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 222 GVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCS 301 (1091)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1091)
.++.+++++.+++.++..+++.+.++|.++||++||+|+||+.+.+++++..++..+...+......+......... .
T Consensus 475 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~ 552 (1522)
T TIGR00957 475 AVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTP--F 552 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 77888888999999999999999999999999999999999999999988887776665555554433222211111 1
Q ss_pred HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCC
Q 001371 302 YALSVWYGGKLIL--EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDD 379 (1091)
Q Consensus 302 ~~~~~~~g~~l~~--~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 379 (1091)
.+.++.++.+++. .+.++.+..++.+.+...+..|+..+...+..+..+..+.+|+.++++.+++.+...........
T Consensus 553 ~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~ 632 (1522)
T TIGR00957 553 LVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPG 632 (1522)
T ss_pred HHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCC
Confidence 1122233445544 35678888888776666667789888888999999999999999999765432211000010011
Q ss_pred CCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHh
Q 001371 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1091)
Q Consensus 380 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr 459 (1091)
..+.|+++|++|+|+++ ++++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.+||
T Consensus 633 ~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------ 699 (1522)
T TIGR00957 633 EGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------ 699 (1522)
T ss_pred CCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------------
Confidence 12369999999999743 35799999999999999999999999999999999999999999999998
Q ss_pred hceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
+|+||||+||+|++||||||.||.+ .++++++++++.|++.+++..+|+|++|.+||+|.+|||||||||+||||+|+
T Consensus 700 -~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~ 777 (1522)
T TIGR00957 700 -SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 777 (1522)
T ss_pred -EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 7999999999999999999999986 67889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHH---HHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhH
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALD---RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~---~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~ 616 (1091)
+|+|+||||||||||+++++.+.+.+. +..+++|+|+|||+++.++.||+|++|++|+|+++|+|+|++++ ++.|.
T Consensus 778 ~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~~~ 856 (1522)
T TIGR00957 778 NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR-DGAFA 856 (1522)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc-chhHH
Confidence 999999999999999999999988885 34678999999999999999999999999999999999999987 78898
Q ss_pred HHHHHHhhcccccccccc-ccccchhhhhhhccccccccc--ccccCCCCCCCCCccccccccCCCCCCCccccCCCCCC
Q 001371 617 QLIRLQEANKESEQTIDG-QRKSEISMESLRHSSHRMSLR--RSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAG 693 (1091)
Q Consensus 617 ~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1091)
++++.+...++....... ....+..........+..... ...................+....+..........+..
T Consensus 857 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1522)
T TIGR00957 857 EFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEET 936 (1522)
T ss_pred HHHHhhccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccch
Confidence 888654322111000000 000000000000000000000 00000000000000000000000000000000000000
Q ss_pred CCCCCCc---cCCCchHHhHhhhCCChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHH
Q 001371 694 PSQPTEE---VAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLAL 770 (1091)
Q Consensus 694 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l 770 (1091)
....+++ ........|+.|+...++...++.+++.++..+......+|++.|.+....... .....+|.++|+++
T Consensus 937 ~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~--~~~~~~~~~iy~~l 1014 (1522)
T TIGR00957 937 WKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGT--QNNTSLRLSVYGAL 1014 (1522)
T ss_pred hhhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC--CCCcchHHHHHHHH
Confidence 0000011 112234557777777666554444444444444555667888888764221100 11234578899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHH
Q 001371 771 GAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNIST 850 (1091)
Q Consensus 771 ~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~ 850 (1091)
+++..++.+++.+++.+++.++++++|++++++++++|++||| .+|+|+|+|||++|++.+|..+|..+..++..++.
T Consensus 1015 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~ 1092 (1522)
T TIGR00957 1015 GILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFN 1092 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh---HHHHHHccchHhhhccchHHHHHH
Q 001371 851 AAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQ---VANDAVGSIRTVASFCAEEKVMQL 927 (1091)
Q Consensus 851 ~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~l~gl~TIra~~~e~~f~~~ 927 (1091)
+++.++++++.+|+++ ++++|+++++++++++|.+..++.++.+...++| +++|++.|++|||||++|++|.++
T Consensus 1093 ~i~~li~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~ 1169 (1522)
T TIGR00957 1093 VIGALIVILLATPIAA---VIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQ 1169 (1522)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHH
Confidence 9999998888877654 3445566666677777878888888877766665 578999999999999999999999
Q ss_pred HHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-hccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccH
Q 001371 928 YKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARL-VEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDS 1006 (1091)
Q Consensus 928 ~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~l-i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1091)
+.+.++.+.+...+.... ..|+++...++..+ +.++.+... ...+.++.+.+..+..........+........+.
T Consensus 1170 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~ 1246 (1522)
T TIGR00957 1170 SDLKVDENQKAYYPSIVA-NRWLAVRLECVGNC--IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEM 1246 (1522)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888765443222 23344333332221 111122212 22455666554433333333334455555667788
Q ss_pred HHHHHHHHHHHHHHcCCCCCCC--CCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCc
Q 001371 1007 NKAKSAAASIFAIIDRESKIDP--SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSL 1084 (1091)
Q Consensus 1007 ~~~~~aa~~i~~~i~~~~~~~~--~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~ 1084 (1091)
..+..++.|+.++++.+++.+. +...++..||.+|.|+|+||+|+|+++++ +|||||||+|+|||++||||+|||||
T Consensus 1247 e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~-~vL~~is~~I~~GekiaIVGrTGsGK 1325 (1522)
T TIGR00957 1247 ETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLD-LVLRHINVTIHGGEKVGIVGRTGAGK 1325 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCc-ccccceeEEEcCCCEEEEECCCCCCH
Confidence 8889999999999876554321 11112223567899999999999986543 69999999999999999999999999
Q ss_pred cccc
Q 001371 1085 KQLT 1088 (1091)
Q Consensus 1085 ~~~~ 1088 (1091)
|+|.
T Consensus 1326 STL~ 1329 (1522)
T TIGR00957 1326 SSLT 1329 (1522)
T ss_pred HHHH
Confidence 9974
No 8
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.2e-111 Score=1019.48 Aligned_cols=579 Identities=46% Similarity=0.781 Sum_probs=547.2
Q ss_pred CCchHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1091)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1091)
.+.++++++++.+| .|++++++++++++.|...|++.++++.++..+.... .+........+++++++++++..++.+
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~-~~~~~~~~~~~al~f~~l~~~~~i~~~ 725 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPD-DDELKREVRAWALIFLGLGIVSGITNF 725 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999887 5778899999999999999999999999999886442 222333334488889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1091)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 201 (1091)
++.+++.+.++++..|+|.++|+++++++++|||...++|.+.+|+.+|+..++..+.+.+..+++.+..+++++++.|+
T Consensus 726 ~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~ 805 (1228)
T KOG0055|consen 726 LQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFI 805 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998766699999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 001371 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1091)
Q Consensus 202 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1091)
++|.++++++++.|++++......+.+.....+..+..++..+.+.|++.|||||++|+.|+++.+.|.+..++..+...
T Consensus 806 ~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~ 885 (1228)
T KOG0055|consen 806 YGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSF 885 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001371 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361 (1091)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 361 (1091)
+++++.++.+++.+.+.++.+++.+|+|++|+..|.+++.+++.++..+.+..+.+++.....+++.++..++.++++++
T Consensus 886 ~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~ 965 (1228)
T KOG0055|consen 886 KRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEIL 965 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888888888888899999999999999999999999
Q ss_pred ccCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCc
Q 001371 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1091)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G 441 (1091)
+++|+++..+..+...++.+|+|+|+||+|+||++|+.+||+|+||+|++||++|+||||||||||++.||.|||+|++|
T Consensus 966 dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G 1045 (1228)
T KOG0055|consen 966 DRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAG 1045 (1228)
T ss_pred cCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 99997766543344455678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCC
Q 001371 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521 (1091)
Q Consensus 442 ~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~ 521 (1091)
.|.|||+|++++++++||++||.|+|||.||++||||||+||.++++++|+++|+|.|++|+||.+||+||||.|||+|.
T Consensus 1046 ~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1046 KVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred eEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC
Confidence 99999999999999999999999999999999999999999976699999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeee
Q 001371 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1091)
Q Consensus 522 ~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 601 (1091)
+||||||||||||||++|||+||||||||||||+++|+.+|++|++.+.+||+|+|||||||+++||.|+|++||+|+|+
T Consensus 1126 QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCchhHHHHHHHh
Q 001371 602 GTHSKLVEDPEGAYSQLIRLQE 623 (1091)
Q Consensus 602 Gt~~eL~~~~~~~y~~l~~~~~ 623 (1091)
|||+||+++ +|.|++|++.|.
T Consensus 1206 GtH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1206 GTHDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred ccHHHHHhC-CCchHHHhhhcc
Confidence 999999997 999999998775
No 9
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.8e-105 Score=1053.24 Aligned_cols=983 Identities=17% Similarity=0.204 Sum_probs=680.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 65 SIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLK 144 (1091)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 144 (1091)
.+..++..++....|++++.+++.+........ .....+++.++++.++..++.....+.....+.++...++..+|+
T Consensus 86 ~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~ 163 (1490)
T TIGR01271 86 GILLYFGEATKAVQPLLLGRIIASYDPFNAPER--EIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYK 163 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455556677788899999987632211110 111223333444445555666556666677888888888899999
Q ss_pred HHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001371 145 TILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVM 224 (1091)
Q Consensus 145 ~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~ 224 (1091)
|+++++...+++. ++|+++|++++|++++.+.+...+..|..++..+++.++++..++| .+++.++++++++++..++
T Consensus 164 K~L~l~~~~~~~~-~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~-~~l~~l~v~~~~~~~~~~~ 241 (1490)
T TIGR01271 164 KTLKLSSRVLDKI-STGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEV-NGFCGLGFLILLALFQACL 241 (1490)
T ss_pred HHHhCCHHHhcCC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999876 8999999999999999999888777777777666666666666776 4677777888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 225 AIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYAL 304 (1091)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1091)
.+++.+.+++.++..++|.+.++|.++|||+||+|+||+.+.+++++..++..+...+......+...+..+.. ..+.
T Consensus 242 ~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~ 319 (1490)
T TIGR01271 242 GQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSG--FFVV 319 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 99999999999999999999999999999999999999999999998888777766666554433322222111 2223
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCCCc
Q 001371 305 SVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLG-EASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGD 383 (1091)
Q Consensus 305 ~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (1091)
++.++.+.+.. .++++.+|+++.++..+..++. .+...+..+..+.++..|+.+++..++..+. . . ......
T Consensus 320 ~~~f~~y~~~~-~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~-~---~--~~~~~~ 392 (1490)
T TIGR01271 320 FLSVVPYALIK-GIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL-E---Y--NLTTTE 392 (1490)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc-c---c--cCCCCc
Confidence 34445555443 3678888887766555555654 4556677788899999999999976543211 1 0 011235
Q ss_pred EEEEeEEEECCCCC-------------------------------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHH
Q 001371 384 IELRDVYFSYPARP-------------------------------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI 432 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~-------------------------------~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll 432 (1091)
|+++|++|+|+... .+++|+|+||+|++|++++|+||+|||||||+++|
T Consensus 393 i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l 472 (1490)
T TIGR01271 393 VEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472 (1490)
T ss_pred eEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999996310 13689999999999999999999999999999999
Q ss_pred hccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCc
Q 001371 433 ERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512 (1091)
Q Consensus 433 ~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~ 512 (1091)
+|+++|++|+|.++| +|+||+|+||+|++||||||+||.+ ++++++.++++.|++.+++..+|+|+
T Consensus 473 ~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~ 538 (1490)
T TIGR01271 473 MGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKD 538 (1490)
T ss_pred hCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccc
Confidence 999999999999999 6999999999999999999999975 67788999999999999999999999
Q ss_pred ccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHH-HHHHHcCCCeEEEEccCchhhhccCeEE
Q 001371 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE-ALDRIMVNRTTVIVAHRLSTVRNADMIA 591 (1091)
Q Consensus 513 ~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~-~l~~~~~~~T~I~ItHrls~i~~aD~Ii 591 (1091)
+|+|||+|.+|||||||||+||||+|++|+||||||||||||+++++.+.+ ++.++.+++|+|+|||+++.++.||+|+
T Consensus 539 ~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii 618 (1490)
T TIGR01271 539 KTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKIL 618 (1490)
T ss_pred cccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999998876 6777788999999999999999999999
Q ss_pred EEeCCEEeeecChhHHhcCCCchhHHHHHHHhhccc-----c----ccc-----cc--------c-ccccchhhhhhhcc
Q 001371 592 VIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKE-----S----EQT-----ID--------G-QRKSEISMESLRHS 648 (1091)
Q Consensus 592 vl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~~~~~~~-----~----~~~-----~~--------~-~~~~~~~~~~~~~~ 648 (1091)
+|++|+|++.|+|+|+.+. ++.|.+.+.......+ . .+. .. . ....+.........
T Consensus 619 ~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1490)
T TIGR01271 619 LLHEGVCYFYGTFSELQAK-RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFA 697 (1490)
T ss_pred EEECCEEEEEcCHHHHHhc-ChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999876 6667666631110000 0 000 00 0 00000000000000
Q ss_pred ccc---------------------------ccccccccCCC-----------CCC-CCCcc------------cc-----
Q 001371 649 SHR---------------------------MSLRRSISRGS-----------SIG-NSSRH------------SI----- 672 (1091)
Q Consensus 649 ~~~---------------------------~~~~~~~~~~~-----------~~~-~~~~~------------~~----- 672 (1091)
..+ ........... ... ...+. ..
T Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1490)
T TIGR01271 698 EKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQ 777 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhh
Confidence 000 00000000000 000 00000 00
Q ss_pred --cccc-----------CCC--CC--CC----cc------c--cCC--CCCCC---CC--------CCCccCCCchHHhH
Q 001371 673 --SVSF-----------GLP--SG--QF----AD------T--ALG--EPAGP---SQ--------PTEEVAPEVPTRRL 710 (1091)
Q Consensus 673 --~~~~-----------~~~--~~--~~----~~------~--~~~--~~~~~---~~--------~~~~~~~~~~~~~~ 710 (1091)
.... ... .. .. .. . .+. ....+ .. ++.+.....+..|+
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~ 857 (1490)
T TIGR01271 778 LMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYL 857 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHH
Confidence 0000 000 00 00 00 0 000 00000 00 00011123345577
Q ss_pred hhhCCChh-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--c---CCchh----------hhhhHHHH-HHHHHHHHHH
Q 001371 711 AYLNKPEI-PVILAGTIAAMANGVILPIYGLLISSVIETF--F---KPPHE----------LKKDSRFW-ALIYLALGAG 773 (1091)
Q Consensus 711 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~----------~~~~~~~~-~~~y~~l~~~ 773 (1091)
.|+...++ .++++.+++.++.++...+..+|+..|+... + ..... ......+| +++|++++++
T Consensus 858 ~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1490)
T TIGR01271 858 RYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADS 937 (1490)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHH
Confidence 77765543 3333333444455566667788888776421 0 00000 00011233 5666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 001371 774 SFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAA 853 (1091)
Q Consensus 774 ~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~ 853 (1091)
..++.+++.+++.+.+.++++++|++++++++++|++||| .+|+|+|+|||++|++.+|..+|..+..++..++.+++
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 938 VLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888999999999999999999999999999999999 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh---HHHHHHccchHhhhccchHHHHHHHHH
Q 001371 854 GLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQ---VANDAVGSIRTVASFCAEEKVMQLYKK 930 (1091)
Q Consensus 854 ~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~l~gl~TIra~~~e~~f~~~~~~ 930 (1091)
.++++++.+|++ +++++|+++++++++++|.+..++.++++...++| ++.|++.|+.|||||++|++|.++|.+
T Consensus 1016 ~l~~i~~~~p~l---~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~ 1092 (1490)
T TIGR01271 1016 AIFVVSVLQPYI---FIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHK 1092 (1490)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHH
Confidence 999888888865 34566777777777888888888888887777766 477999999999999999999999999
Q ss_pred HhhhhHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHhhccCCcCHHHHHHHHHHHHHH-HHHHHHHhcccccH
Q 001371 931 KCEAPMKTGIRQGMVSGGGFGASFFLLFAF---YAASFYAGARLVEDGKATFSDVFKVFFSLTMT-AIGISQSSSFSSDS 1006 (1091)
Q Consensus 931 ~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~---~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1006 (1091)
.++.+.+...... ....|+++...++..+ ..+.++++...+..|. .+ ..+++.+. ...+.........+
T Consensus 1093 ~~~~~~~~~~~~~-~~~~wl~~~~~~i~~~~~~~~~~l~~~~~~~~~g~--~g----~~l~~~~~l~~~l~~l~~~~~~l 1165 (1490)
T TIGR01271 1093 ALNLHTANWFLYL-STLRWFQMRIDIIFVFFFIAVTFIAIGTNQDGEGE--VG----IILTLAMNILSTLQWAVNSSIDV 1165 (1490)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccH--HH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9886654322211 1112233222221111 1111223322222221 11 11111111 11223333344567
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCC----------------CCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeC
Q 001371 1007 NKAKSAAASIFAIIDRESKIDPSDE----------------SGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRA 1070 (1091)
Q Consensus 1007 ~~~~~aa~~i~~~i~~~~~~~~~~~----------------~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~ 1070 (1091)
.....+..++.++++.+++.+.+.+ .+++.||.+|.|+|+||+|+|++. ..+||+||||+|+|
T Consensus 1166 e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~ 1244 (1490)
T TIGR01271 1166 DGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEG 1244 (1490)
T ss_pred HHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcC
Confidence 7778888899888765443221100 111235678999999999999754 33699999999999
Q ss_pred CCEEEEEcCCCCCccccc
Q 001371 1071 GKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1071 Ge~valVG~SG~~~~~~~ 1088 (1091)
||+|||||+||||||+|.
T Consensus 1245 GekvaIvGrSGsGKSTLl 1262 (1490)
T TIGR01271 1245 GQRVGLLGRTGSGKSTLL 1262 (1490)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 999999999999999974
No 10
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.3e-104 Score=1039.94 Aligned_cols=975 Identities=14% Similarity=0.142 Sum_probs=693.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRG 140 (1091)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 140 (1091)
+++.++..++..++....|++++.+++.+..+ +. . ......+++.++++.++..++...+.+...+.+.++...++.
T Consensus 246 ~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~-~~-~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~ 322 (1560)
T PTZ00243 246 VWWQIPFKLLSDVCTLTLPVLLKYFVKFLDAD-NA-T-WGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNA 322 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777778888888999999876332 11 1 111122233344444556666666667778888999999999
Q ss_pred HHHHHHHcCCchhhhc-cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001371 141 LYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAM 219 (1091)
Q Consensus 141 ~~~~~ll~~~~~~~~~-~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~ 219 (1091)
.+|+|+++++...+.. +.++|+++|++++|++++.+++...+..|..++..+++.+++...++| .+++.++++++.+.
T Consensus 323 ~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~~lL~~~lG~-~al~gv~vl~v~~p 401 (1560)
T PTZ00243 323 LIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGW-CALMAVAVLLVTLP 401 (1560)
T ss_pred HHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH
Confidence 9999999999877642 226899999999999999999988887777777666666666667777 46777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 220 SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299 (1091)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1091)
+..++.++..+.+++.++..|+|.+.++|.++|||+||+++||+.+.+++++..++..+...+......+...+......
T Consensus 402 l~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~ 481 (1560)
T PTZ00243 402 LNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPT 481 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999998877777666655555444333322222
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----cC-C---
Q 001371 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEID----AY-D--- 371 (1091)
Q Consensus 300 ~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~----~~-~--- 371 (1091)
+. .++.++.+.+..+.++++.+|+.+.++..+..|+..+...+..+.++.++..|+.+++..++... +. +
T Consensus 482 l~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~ 559 (1560)
T PTZ00243 482 LM--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWR 559 (1560)
T ss_pred HH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcc
Confidence 22 22244567777889999999999888888888998888888999999999999999997643100 00 0
Q ss_pred ------C--C--------------Ccc---------------------------cCCCCCcEEEEeEEEECCCC------
Q 001371 372 ------T--K--------------GKI---------------------------LDDIRGDIELRDVYFSYPAR------ 396 (1091)
Q Consensus 372 ------~--~--------------~~~---------------------------~~~~~~~I~~~~vsf~Y~~~------ 396 (1091)
. . +.. .....+.+.++|++|+|+..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1560)
T PTZ00243 560 EQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIV 639 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccc
Confidence 0 0 000 00011357788888876420
Q ss_pred -------------------------------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEE
Q 001371 397 -------------------------------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1091)
Q Consensus 397 -------------------------------~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~i 445 (1091)
.++++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.+
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~ 719 (1560)
T PTZ00243 640 EGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA 719 (1560)
T ss_pred cccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 1245899999999999999999999999999999999999999999987
Q ss_pred CCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCCh
Q 001371 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1091)
Q Consensus 446 dg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSG 525 (1091)
++ +|+||||+||+|++||+|||.|+.+ .+++++.++++.|+++++++.+|+|++|.+|++|.+|||
T Consensus 720 ~~-------------~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSG 785 (1560)
T PTZ00243 720 ER-------------SIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSG 785 (1560)
T ss_pred CC-------------eEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCH
Confidence 54 7999999999999999999999876 567789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHH-HHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecCh
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i-~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~ 604 (1091)
||||||+||||+|++|+|||||||||+||+++++.+ ++++....+++|+|+|||+++.++.||+|++|++|+|+++|+|
T Consensus 786 GQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~ 865 (1560)
T PTZ00243 786 GQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSS 865 (1560)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999987765 4566666678999999999999999999999999999999999
Q ss_pred hHHhcCCCchhHHHHHHHhhccccccccccccccchhhhhhhcccccccccccccCCCCCCCCCccccccccCCCCCCCc
Q 001371 605 SKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFA 684 (1091)
Q Consensus 605 ~eL~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1091)
+|+++. +.|..+........+..+.....+.... +.. . ........ ........... ...
T Consensus 866 ~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~--------~~~~~~~~--~~~~~~~~~~~-----~~~ 925 (1560)
T PTZ00243 866 ADFMRT--SLYATLAAELKENKDSKEGDADAEVAEV--DAA-P--------GGAVDHEP--PVAKQEGNAEG-----GDG 925 (1560)
T ss_pred HHHHhC--hHHHHHHHhhcccccccccccccccccc--ccc-c--------cccccccc--ccccccccccc-----ccc
Confidence 999864 5677776543221110000000000000 000 0 00000000 00000000000 000
Q ss_pred cccCCCCCCCCCC-CCccCCCchHHhHhhhCCChhHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHH
Q 001371 685 DTALGEPAGPSQP-TEEVAPEVPTRRLAYLNKPEIPVILAG-TIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRF 762 (1091)
Q Consensus 685 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1091)
............. +.+.....+..|..|+...+...+++. +++.++.........+|++.|...... .+...
T Consensus 926 ~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~------~~~~~ 999 (1560)
T PTZ00243 926 AALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFK------LSAAT 999 (1560)
T ss_pred cccccccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC------CCccc
Confidence 0000000000000 011122234556777765543332222 222333444445567888887653211 12346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHH
Q 001371 763 WALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALA 842 (1091)
Q Consensus 763 ~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~ 842 (1091)
|+++|++++++.+++.+++.+.....+.++++++|+++|++++++|++||| .+|+|+|+|||++|++.+|..++..+.
T Consensus 1000 ~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~Di~~id~~l~~~l~ 1077 (1560)
T PTZ00243 1000 YLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTLPMSYL 1077 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHhhHHHHHHHHHHHHH
Confidence 888999998888888888888888888999999999999999999999999 789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh---HHHHHHccchHhhhcc
Q 001371 843 RIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQ---VANDAVGSIRTVASFC 919 (1091)
Q Consensus 843 ~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~l~gl~TIra~~ 919 (1091)
.++..++.+++.++++++.+|+ ++++++|++++++++.++|.+..++.+|......+| +++|++.|++|||+|+
T Consensus 1078 ~~~~~~~~~i~~li~~~~~~p~---~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~ 1154 (1560)
T PTZ00243 1078 YLLQCLFSICSSILVTSASQPF---VLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYG 1154 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCc
Confidence 9999999999999888888774 345566777777777888888888888877776655 5789999999999999
Q ss_pred chHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh--HhhccCCcCHHHHHHHHHHHHHHHHHH
Q 001371 920 AEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAF-YAASFYAGA--RLVEDGKATFSDVFKVFFSLTMTAIGI 996 (1091)
Q Consensus 920 ~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~-~a~~~~~g~--~li~~g~~~~~~~~~~~~~~~~~~~~~ 996 (1091)
.|++|.++|.+.++.+.+...+.... ..|+++...++..+ +.+..+++. .+...+..+.+.+..++.........+
T Consensus 1155 ~e~~~~~~~~~~~d~~~~~~~~~~~~-~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l 1233 (1560)
T PTZ00243 1155 KAHLVMQEALRRLDVVYSCSYLENVA-NRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATL 1233 (1560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999988887655443222 22333222222111 111111221 122223334432222222112222334
Q ss_pred HHHhcccccHHHHHHHHHHHHHHHcCCCCCCCC--------------------------CCCCC---cccccceeEEEee
Q 001371 997 SQSSSFSSDSNKAKSAAASIFAIIDRESKIDPS--------------------------DESGT---ILEDVKGEIELHH 1047 (1091)
Q Consensus 997 ~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~--------------------------~~~~~---~~~~~~G~I~f~n 1047 (1091)
........++.....+..++.++++..++.+.+ ...++ +.++.+|.|+|+|
T Consensus 1234 ~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~n 1313 (1560)
T PTZ00243 1234 NWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEG 1313 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEE
Confidence 444555678888899999999888533221100 00010 1223579999999
Q ss_pred eeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1048 VSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1048 Vs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
|+|+|+++ .++|||||||+|+|||+|||||+||||||||.
T Consensus 1314 Vsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl 1353 (1560)
T PTZ00243 1314 VQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLL 1353 (1560)
T ss_pred EEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHH
Confidence 99999754 22599999999999999999999999999974
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.3e-98 Score=902.91 Aligned_cols=570 Identities=30% Similarity=0.481 Sum_probs=523.3
Q ss_pred CchHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1091)
Q Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1091)
+..+.+++..+.++++. +.-.++.+++..+.....|++...++|.+....+ .+.+...++.+++.++...++.++
T Consensus 139 ~~~~~~f~~~~~~~~~~-l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~----~~tL~vl~ig~~~~~l~~~~l~~l 213 (709)
T COG2274 139 PFGLSWFIPLLFKYRRL-LFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS----RSTLTVLAIGLLLAALFEALLRLL 213 (709)
T ss_pred ccchHhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566676666655443 3334444555555566667777888998765432 244555667777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1091)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 202 (1091)
+.+...+++.|+...+-..+|+|++++|+.||+++ ++|++++|+. |.++|+++++......+.++.++++.+++|+++
T Consensus 214 r~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~y 291 (709)
T COG2274 214 RTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLY 291 (709)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCC-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 9999999997 899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 001371 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1091)
Q Consensus 203 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1091)
+|.++++.++.+|+++++..++.+..++..++..+..++.++.+.|++.||++||+.+.|.++..+|++...+..+...+
T Consensus 292 s~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~ 371 (709)
T COG2274 292 SWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFK 371 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001371 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1091)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1091)
..........+..++..++.++++|+|++++.+|.+|+|.++++.........|+..+...+.+++....+.+|+.++++
T Consensus 372 ~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~ 451 (709)
T COG2274 372 TEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILD 451 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999888777888999999999999999999999999999
Q ss_pred cCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcE
Q 001371 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1091)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~ 442 (1091)
.++|.+... .....++..|+|+|+||+|+|+.+ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+
T Consensus 452 ~~~E~~~~~-~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~ 529 (709)
T COG2274 452 TPPEQEGDK-TLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529 (709)
T ss_pred CCccccccc-ccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 988754322 123445667899999999999864 358999999999999999999999999999999999999999999
Q ss_pred EEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCC
Q 001371 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1091)
Q Consensus 443 I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~ 522 (1091)
|++||+|+++++++++|++|+||+||+.||+|||||||++|+|++++|++++||+.+++|+||+++|.||||+|||+|.+
T Consensus 530 I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~ 609 (709)
T COG2274 530 ILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGAN 609 (709)
T ss_pred EEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeec
Q 001371 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 523 LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~G 602 (1091)
|||||||||+||||+++||+||||||||||||++||+.|.+.|.+..++||+|+||||++++++||+|+|||+|+|+|+|
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~g 689 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQG 689 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCchhHHHHHHH
Q 001371 603 THSKLVEDPEGAYSQLIRLQ 622 (1091)
Q Consensus 603 t~~eL~~~~~~~y~~l~~~~ 622 (1091)
+|+||++. +|.|+++++.|
T Consensus 690 s~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 690 SHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred CHHHHHHh-cChHHHHHhcc
Confidence 99999998 99999998765
No 12
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.8e-93 Score=872.86 Aligned_cols=569 Identities=22% Similarity=0.293 Sum_probs=486.7
Q ss_pred hHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1091)
Q Consensus 45 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1091)
.++++++|++++++. +++++++.++..++.+..|++++.++|.+...... ...+..+...++++.++..++.+++.
T Consensus 9 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (588)
T PRK11174 9 LTRWLKQQSKPAKRW-LNLSILLGFLSGLLLIAQAWLLATILQALIIENIP---REALLPPFILLILLFVLRALLAWLRE 84 (588)
T ss_pred hhHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888877554 55677777888888889999999999976421111 11122233344455566778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001371 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1091)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 204 (1091)
+...+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 85 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (588)
T PRK11174 85 RVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINW 163 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887 8999999999999999999998888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1091)
Q Consensus 205 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1091)
.+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..
T Consensus 164 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 243 (588)
T PRK11174 164 AAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVL 243 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888889999999999999999999999999999999999999999999999999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQV---------VNVMVAVLTGSMSLGEASPCLSAFGAGQAAAF 355 (1091)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 355 (1091)
........+..++..+..++++++++... .|.+++|.+ +.++.+......|+..+...+..+..+..+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ 322 (588)
T PRK11174 244 RMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAE 322 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666555555555554444444554443 377777754 11112223345688888888889999999999
Q ss_pred HHHHHhccCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001371 356 KMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 356 r~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
|+.++++.+++.+... ....+....+.|+|+||+|.|++ ++++|+|+||+|+||+++|||||||||||||+++|+|+
T Consensus 323 ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 323 SLVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred HHHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 9999998765422111 11111112356999999998863 35799999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccc
Q 001371 436 YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515 (1091)
Q Consensus 436 ~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~ 515 (1091)
| |++|+|.+||+|+++++.+++|++|+||||||+||+|||||||++|+|++++|++++|++.|++++||++||+||||.
T Consensus 400 ~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~ 478 (588)
T PRK11174 400 L-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP 478 (588)
T ss_pred C-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccc
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeC
Q 001371 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1091)
Q Consensus 516 vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 595 (1091)
|||+|.+||||||||||||||+++||+||||||||||||++||+.|+++|++..++||+|+||||++++++||+|+||++
T Consensus 479 vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~ 558 (588)
T PRK11174 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQD 558 (588)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred CEEeeecChhHHhcCCCchhHHHHHHHhh
Q 001371 596 GKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1091)
Q Consensus 596 G~Ive~Gt~~eL~~~~~~~y~~l~~~~~~ 624 (1091)
|+|+|+|+|+||+++ +|.|+++++.|..
T Consensus 559 G~i~e~G~~~eL~~~-~~~y~~l~~~q~~ 586 (588)
T PRK11174 559 GQIVQQGDYAELSQA-GGLFATLLAHRQE 586 (588)
T ss_pred CeEeecCCHHHHHhc-chHHHHHHHHhhc
Confidence 999999999999998 8999999987753
No 13
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.1e-91 Score=856.31 Aligned_cols=562 Identities=34% Similarity=0.586 Sum_probs=504.3
Q ss_pred HHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1091)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1091)
+++++.+.+ .+ .+.+++++.++..+.....|++++.++|.+.. +. .....+...++++.++..++.+...+
T Consensus 4 ~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~----~~~~~~~~~~~~~~~~~~v~~~~~~~ 74 (567)
T COG1132 4 LRRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA--DL----GELLELLLLLLLLALLGGVLRALQSY 74 (567)
T ss_pred HHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544 34 55666777777777888888899999997651 11 22233344445555567778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001371 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1091)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 205 (1091)
...+.+.+...++|.++|++++++|+.+|++. ++|++++|+++|++.++..+......+...+..+++.+++++.++|.
T Consensus 75 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (567)
T COG1132 75 LGSRLGQKIVADLRRDLFEKLLRLPLSFFDKA-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWR 153 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcC-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88888899999999999999999999999987 89999999999999999999988666666788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1091)
Q Consensus 206 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1091)
+++++++..|++.+...++.++.++..++.++..++..+.+.|.++|+++||+|+.|+...+++.+..+...+...+...
T Consensus 154 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (567)
T COG1132 154 LALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASR 233 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001371 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1091)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1091)
..+...++..++..+...+++++|..++..+.+++|.+.+++.+......|+..+......+..+..+.+|+.++++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 313 (567)
T COG1132 234 LEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEP 313 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 88888788888888899999999999999999999999999888888888999999999999999999999999999877
Q ss_pred CCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEE
Q 001371 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1091)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~i 445 (1091)
+..+.+.. .....++|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 314 ~~~~~~~~---~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 314 EVEDPPDP---LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred cccCCCCC---CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 64432211 2234567999999999974 468999999999999999999999999999999999999999999999
Q ss_pred CCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCCh
Q 001371 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1091)
Q Consensus 446 dg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSG 525 (1091)
||+|+++++.++||++|+||||||+||++||+|||++|+|++++||+++||+.|+++|||+++|+||||+|||+|.+|||
T Consensus 389 dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg 468 (567)
T COG1132 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468 (567)
T ss_pred CCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChh
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~ 605 (1091)
|||||||||||+++||||||||||||+||++||+.|++++.++.++||+|+||||++++++||+|+|||+|+|+|.|+|+
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~ 548 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHE 548 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHh
Q 001371 606 KLVEDPEGAYSQLIRLQE 623 (1091)
Q Consensus 606 eL~~~~~~~y~~l~~~~~ 623 (1091)
||+++ +|.|+++++.|.
T Consensus 549 eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 549 ELLAK-GGLYARLYQAQG 565 (567)
T ss_pred HHHHc-CCHHHHHHHHhh
Confidence 99998 999999998875
No 14
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.1e-92 Score=919.28 Aligned_cols=570 Identities=29% Similarity=0.468 Sum_probs=490.4
Q ss_pred HHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1091)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1091)
+.+++++++++++. ++++++++++.+++.|++|++++.+++.+.... ........+++++++++++.+++.+++.+
T Consensus 813 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~~~~~i~~~~~~~l~~~ 888 (1466)
T PTZ00265 813 LRIVYREIFSYKKD-VTIIALSILVAGGLYPVFALLYAKYVSTLFDFA---NLEANSNKYSLYILVIAIAMFISETLKNY 888 (1466)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666555443 667778888899999999999999999764321 11122334566677778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhhc-cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001371 126 CWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1091)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 204 (1091)
+..++++++..++|.++|+++++++++||++ +.++|++++|+++|++.+++.+...+..++..++.++++++++++++|
T Consensus 889 ~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~ 968 (1466)
T PTZ00265 889 YNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCP 968 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999985 237899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHchHHHHHHhccHHHHH
Q 001371 205 LLTLVMLSSIPLLAMSGGVMAIMISKMS-SR-----------------GQGAYAKAASVVEQTIGSIRTVASFTGEKQAM 266 (1091)
Q Consensus 205 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 266 (1091)
.+++++++++|++ ...+.++.+... ++ ..+..++....++|.++||++||+|+.|+.+.
T Consensus 969 ~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~ 1045 (1466)
T PTZ00265 969 IVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFC 1045 (1466)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHH
Confidence 9887765444333 333444332211 11 12335677899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 267 SNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSA 346 (1091)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~ 346 (1091)
++|.+..+...+...+.....++..++..++..+..++++|+|++++..|.+++|++++++.+.+....++..+...+..
T Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~ 1125 (1466)
T PTZ00265 1046 NLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGD 1125 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888888899999999999999999999998776655444567777888889
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcCCCCCcc---cCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCC
Q 001371 347 FGAGQAAAFKMFETINRKPEIDAYDTKGKI---LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGS 423 (1091)
Q Consensus 347 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGs 423 (1091)
++.+..+++|++++++.+++++..+..+.. ++...+.|+|+||+|+||++++.+||+|+||+|+||+++||||||||
T Consensus 1126 ~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGs 1205 (1466)
T PTZ00265 1126 SENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGS 1205 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCC
Confidence 999999999999999877654321111111 12345689999999999876666899999999999999999999999
Q ss_pred cHHHHHHHHhccCCC------------------------------------------------------CCcEEEECCcc
Q 001371 424 GKSTVISLIERFYDP------------------------------------------------------QAGEVLIDGIN 449 (1091)
Q Consensus 424 GKSTLl~ll~g~~~~------------------------------------------------------~~G~I~idg~~ 449 (1091)
|||||++||+|+|+| ++|+|++||+|
T Consensus 1206 GKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~d 1285 (1466)
T PTZ00265 1206 GKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVD 1285 (1466)
T ss_pred CHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEE
Confidence 999999999999999 69999999999
Q ss_pred ccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 450 LKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 450 i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
+++++.++||++||||||||+||+|||||||+||+|+++++++++||+.|++++||.+||+||||.|||+|.+|||||||
T Consensus 1286 i~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQ 1365 (1466)
T PTZ00265 1286 ICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQ 1365 (1466)
T ss_pred HHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhccCeEEEEeC----CEEe-eec
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHR----GKIV-EKG 602 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~----G~Iv-e~G 602 (1091)
||||||||+|||+||||||||||||+++|+.|+++|++.. +++|+|+||||++++++||+|+||++ |+++ |+|
T Consensus 1366 RIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~G 1445 (1466)
T PTZ00265 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHG 1445 (1466)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEec
Confidence 9999999999999999999999999999999999999984 69999999999999999999999999 9955 899
Q ss_pred ChhHHhcCCCchhHHHHHHH
Q 001371 603 THSKLVEDPEGAYSQLIRLQ 622 (1091)
Q Consensus 603 t~~eL~~~~~~~y~~l~~~~ 622 (1091)
||+||+++.+|.|+++++.|
T Consensus 1446 th~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1446 THEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred CHHHHHhcCCChHHHHHhhc
Confidence 99999983389999999765
No 15
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.6e-90 Score=862.31 Aligned_cols=564 Identities=36% Similarity=0.556 Sum_probs=500.6
Q ss_pred chHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1091)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1091)
..+++++++.++.++ .++..+++.++..++....|++++.++|.+....+. .......+.++++.++..++.+++
T Consensus 147 ~~~~~l~~~~~~~~~-~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~ 221 (711)
T TIGR00958 147 DLLFRLLGLSGRDWP-WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP----PALASAIFFMCLLSIASSVSAGLR 221 (711)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888776543 456677777778888888999999999987543221 112222333444555677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001371 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1091)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 203 (1091)
.++..+.+.++..++|..+|++++++|+.+|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.++
T Consensus 222 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s 300 (711)
T TIGR00958 222 GGSFNYTMARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLS 300 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888899999999999999999999999999886 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001371 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1091)
Q Consensus 204 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1091)
|.+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+.
T Consensus 301 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 380 (711)
T TIGR00958 301 PRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRK 380 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001371 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1091)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1091)
....+....+..++..+..++++++|++++..|.+++|.+++++.+......|+..+......++.+..+.+|+.++++.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~ 460 (711)
T TIGR00958 381 ALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDR 460 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77666666666666667777788899999999999999999998888888889999999999999999999999999987
Q ss_pred CCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE
Q 001371 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1091)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I 443 (1091)
+++.+... ...+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 461 ~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 538 (711)
T TIGR00958 461 KPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538 (711)
T ss_pred CCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 76543221 1112234567999999999986556789999999999999999999999999999999999999999999
Q ss_pred EECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCC
Q 001371 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1091)
Q Consensus 444 ~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~L 523 (1091)
.+||+|+++++.+++|++|+||||||++|++||||||++|.+++++|++++|++.|+++++|++||+||||.+||+|.+|
T Consensus 539 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 618 (711)
T TIGR00958 539 LLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQL 618 (711)
T ss_pred EECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecC
Q 001371 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 524 SGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 603 (1091)
|||||||||||||+++||+||||||||||||+++|+.+++ ....++||+|+||||+++++.||+|+||++|+|+|+|+
T Consensus 619 SGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGT 696 (711)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeC
Confidence 9999999999999999999999999999999999999998 33457899999999999999999999999999999999
Q ss_pred hhHHhcCCCchhHHH
Q 001371 604 HSKLVEDPEGAYSQL 618 (1091)
Q Consensus 604 ~~eL~~~~~~~y~~l 618 (1091)
|+||+++ +|.|+++
T Consensus 697 ~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 697 HKQLMED-QGCYKHL 710 (711)
T ss_pred HHHHHhC-CCchHhc
Confidence 9999988 7889876
No 16
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=6.4e-89 Score=849.43 Aligned_cols=564 Identities=27% Similarity=0.360 Sum_probs=499.6
Q ss_pred chHHHHhhh-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 44 VPFYKLFTF-ADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1091)
Q Consensus 44 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1091)
..+++++++ +++.++ .+...+++.++..+.....|++++.++|.+....+. ..+...++.++++.++..++.++
T Consensus 121 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~ 195 (686)
T TIGR03797 121 LGLRDLLRFALRGARR-DLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADR----SLLVQIALALLAAAVGAAAFQLA 195 (686)
T ss_pred ccHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCh----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666665 444433 344556666666777777888999999987543221 22333444455566677888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1091)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 202 (1091)
+.+...+++.++..++|..+|+|++++|+.+|+++ ++|++++|++ |++.+++.+...+...+..+..+++.+++++.+
T Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (686)
T TIGR03797 196 QSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYY 273 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887 9999999997 899999999888777777777788888899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 001371 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1091)
Q Consensus 203 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1091)
+|.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+++.|+.+.++|.+...+..+...+
T Consensus 274 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 353 (686)
T TIGR03797 274 SWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELS 353 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001371 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1091)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1091)
..........+..++..+..++++++|++++..|.+|+|.++++..+......|+..+...+..++.+..+.+|+.++++
T Consensus 354 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 433 (686)
T TIGR03797 354 AQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILE 433 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888877777777778888888999999999999999999998888777788999999999999999999999999998
Q ss_pred cCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcE
Q 001371 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1091)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~ 442 (1091)
.++|.+... ..+.+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 434 ~~~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 509 (686)
T TIGR03797 434 ALPEVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS 509 (686)
T ss_pred CCcccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 765533211 1112234679999999999743 468999999999999999999999999999999999999999999
Q ss_pred EEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCC
Q 001371 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1091)
Q Consensus 443 I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~ 522 (1091)
|.+||+|+++++.+++|++|+||||||+||+|||||||++|+| ++++++++|++.|+++++|+++|+||||+|||+|.+
T Consensus 510 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~ 588 (686)
T TIGR03797 510 VFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGT 588 (686)
T ss_pred EEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCC
Confidence 9999999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeec
Q 001371 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 523 LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~G 602 (1091)
|||||||||+||||++++|+|||||||||+||+++|+.+.+.|++. ++|+|+||||+++++.||+|+||++|+|+|.|
T Consensus 589 LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999886 68999999999999999999999999999999
Q ss_pred ChhHHhcCCCchhHHHHHHH
Q 001371 603 THSKLVEDPEGAYSQLIRLQ 622 (1091)
Q Consensus 603 t~~eL~~~~~~~y~~l~~~~ 622 (1091)
+|+||+++ +|.|+++++.|
T Consensus 667 ~~~~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 667 TYDELMAR-EGLFAQLARRQ 685 (686)
T ss_pred CHHHHHhC-CcHHHHHHHhc
Confidence 99999997 89999998754
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.8e-88 Score=848.36 Aligned_cols=565 Identities=28% Similarity=0.408 Sum_probs=499.4
Q ss_pred chHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1091)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1091)
..+++++++++++++. ++..+++.++..++....|++++.++|.+...... ..+...++.++++.++..++.+++
T Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~ 216 (708)
T TIGR01193 142 NSLLKFIPLITRQKKL-IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMM----GTLGIISIGLIIAYIIQQILSYIQ 216 (708)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777665443 44555666666677778888999999987543211 222333334445556677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001371 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1091)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 203 (1091)
.++..+.+.++..++|.++|+|++++|+.+|++. ++|++++|++ |++.+++++.......+..+..+++.++++++++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (708)
T TIGR01193 217 IFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQN 294 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999887 9999999998 9999999988888777888888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001371 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1091)
Q Consensus 204 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1091)
|.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+.
T Consensus 295 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 374 (708)
T TIGR01193 295 MLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKY 374 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001371 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1091)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1091)
.........+..++..+..++++++|++++..|.+|+|.++++..+......|+..+...+..++.+..+.+|+.++++.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 454 (708)
T TIGR01193 375 QKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77777777777777777788889999999999999999999988888888889999999999999999999999999987
Q ss_pred CCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE
Q 001371 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1091)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I 443 (1091)
++|.+.... ....++..+.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 455 ~~e~~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I 531 (708)
T TIGR01193 455 DSEFINKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI 531 (708)
T ss_pred CCccccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE
Confidence 665432211 0112233568999999999973 3589999999999999999999999999999999999999999999
Q ss_pred EECCccccCCChHHHhhceeEEeccCccccccHHHHhccC-CCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCC
Q 001371 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1091)
Q Consensus 444 ~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g-~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~ 522 (1091)
.+||+|+++++.+++|++|+||||||+||+|||||||++| +|+++++++++|++.++++++|++||+||||+|||+|.+
T Consensus 532 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~ 611 (708)
T TIGR01193 532 LLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611 (708)
T ss_pred EECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCC
Confidence 9999999999999999999999999999999999999999 578999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeec
Q 001371 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 523 LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~G 602 (1091)
|||||||||+||||++++|+|||||||||+||+++|+.+.+.|++. +++|+|+||||+++++.||+|++|++|+|+|.|
T Consensus 612 LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999885 789999999999999999999999999999999
Q ss_pred ChhHHhcCCCchhHHHHH
Q 001371 603 THSKLVEDPEGAYSQLIR 620 (1091)
Q Consensus 603 t~~eL~~~~~~~y~~l~~ 620 (1091)
+|+||+++ +|.|+++++
T Consensus 691 ~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 691 SHDELLDR-NGFYASLIH 707 (708)
T ss_pred CHHHHHhc-CCcHHHHhh
Confidence 99999988 899999874
No 18
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.7e-88 Score=847.92 Aligned_cols=564 Identities=25% Similarity=0.344 Sum_probs=498.5
Q ss_pred hHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1091)
Q Consensus 45 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1091)
.+++++++++++++. +...++++++..++....|++++.++|.+...... ..+..+++.++++.++..++.+++.
T Consensus 141 ~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~ 215 (710)
T TIGR03796 141 LLRALWRRLRGSRGA-LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ----DWLRPLLLGMGLTALLQGVLTWLQL 215 (710)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677776655443 34455555566666677788899999976543221 2222333444555566778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001371 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1091)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 204 (1091)
++...++.++..++|..+|+|++++|+++|+++ ++|++++|+++| +.+++++...+...+..+..+++.+++++.++|
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 293 (710)
T TIGR03796 216 YYLRRLQIKLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDP 293 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887 999999999988 789999998888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1091)
Q Consensus 205 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1091)
.+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+..
T Consensus 294 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 373 (710)
T TIGR03796 294 VLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELG 373 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001371 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1091)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~ 364 (1091)
........+..++..+..++++++|++++..|.+|+|.++++..+......|+..+...+..++....+.+|+.++++.+
T Consensus 374 ~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~ 453 (710)
T TIGR03796 374 VLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNP 453 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 87777777777788888888899999999999999999999888888888899999999999999999999999999876
Q ss_pred CCCCcCCC---C-Cccc-CCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001371 365 PEIDAYDT---K-GKIL-DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1091)
Q Consensus 365 ~~~~~~~~---~-~~~~-~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~ 439 (1091)
++.+.... . .... +...+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|+
T Consensus 454 ~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~ 532 (710)
T TIGR03796 454 VDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW 532 (710)
T ss_pred CccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 65432110 0 0111 2234689999999999853 468999999999999999999999999999999999999999
Q ss_pred CcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccC
Q 001371 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1091)
Q Consensus 440 ~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~ 519 (1091)
+|+|.+||+|+++++.+++|++|+||||||+||+|||||||++++|+++++++++|++.++++++|+++|+||||.|||+
T Consensus 533 ~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 533 SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEe
Q 001371 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1091)
Q Consensus 520 G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Iv 599 (1091)
|.+|||||||||+||||++++|+||||||||||||+++|+.|.+.|++ .++|+|+||||+++++.||+|+||++|+|+
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999987 589999999999999999999999999999
Q ss_pred eecChhHHhcCCCchhHHHH
Q 001371 600 EKGTHSKLVEDPEGAYSQLI 619 (1091)
Q Consensus 600 e~Gt~~eL~~~~~~~y~~l~ 619 (1091)
|.|+|+||+++ +|.|++++
T Consensus 691 ~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 691 QRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred EecCHHHHHHc-CCcHHHHh
Confidence 99999999987 89999886
No 19
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-91 Score=756.70 Aligned_cols=557 Identities=27% Similarity=0.375 Sum_probs=458.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 63 IGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKV-SKVAVKFVY--LGIGSGIASFLQVTCWMITGERQATRIR 139 (1091)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lr 139 (1091)
+..++..+.-+.....|.+.++++|.+..+.. +...+ ..+....++ -+-+.++++-++.++|..+.+-...++-
T Consensus 219 ~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~---~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie 295 (790)
T KOG0056|consen 219 FCLFLLIIGRLINVSLPILSKWIVDELTAPDT---FQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIE 295 (790)
T ss_pred HHHHHHHHHHHHhhhhHHhHHHHHHhhcCcch---hhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHH
Confidence 33444444445556677788888887753311 11111 111111111 1223457777888889989999999999
Q ss_pred HHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHH
Q 001371 140 GLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF-LIAFIKGWLLTLVMLSSIPLLA 218 (1091)
Q Consensus 140 ~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~l~l~~l~~~pl~~ 218 (1091)
..+|+|+..+++.|+-++ ++|+++.-|....+.+. ++.....++.-.+.-+.+++ .+....+|+.+++++++..++.
T Consensus 296 ~~lfrHlh~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~ 373 (790)
T KOG0056|consen 296 TELFRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYC 373 (790)
T ss_pred HHHHHHHHhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHh
Confidence 999999999999999887 89999988887766665 33333333332222222222 2333468888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 219 MSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIV 298 (1091)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1091)
.....+....-+..++......+......+++-|.++||-|++|+++.++|++...++.+...|......+....-..+.
T Consensus 374 ~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii 453 (790)
T KOG0056|consen 374 YVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGII 453 (790)
T ss_pred heeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 76666655555666666666666677788999999999999999999999999999988887777655555444444444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccC
Q 001371 299 FCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILD 378 (1091)
Q Consensus 299 ~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 378 (1091)
.+..+..-++..+++..+.+|+|+++.+..|++.+.+|+..+....-.++....-.++++|++.++||..+.+ ...+..
T Consensus 454 ~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P-~a~pl~ 532 (790)
T KOG0056|consen 454 GLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP-GAPPLK 532 (790)
T ss_pred hhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC-CCCCcc
Confidence 4444444444556778899999999999999999999999999999999999999999999999988876543 233344
Q ss_pred CCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH
Q 001371 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1091)
Q Consensus 379 ~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l 458 (1091)
...|.|+|+||+|.|+ +++|+|+||||+++||+++|+|||||+||||++++|.||||.++|+|.|||+||++...++|
T Consensus 533 ~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 533 VTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred ccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH
Confidence 4578999999999996 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 459 r~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
|++||+||||..|||+||..||.||+|.+++||+.+|+++|++||-|.++|+||+|.|||||-.||||+|||+||||+++
T Consensus 611 Rs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred HHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHH
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l 618 (1091)
|+|.|++|||||||||.+||+.||+++.++.++||.|+|||||||+-+||.|+|++||+|+|.|+|+||+++++|.|++|
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~M 770 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADM 770 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred HHHHhhccc
Q 001371 619 IRLQEANKE 627 (1091)
Q Consensus 619 ~~~~~~~~~ 627 (1091)
|+.|+...+
T Consensus 771 Wq~qqa~g~ 779 (790)
T KOG0056|consen 771 WQAQQAMGK 779 (790)
T ss_pred HHHHHhcCc
Confidence 988875443
No 20
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=7.6e-88 Score=820.46 Aligned_cols=566 Identities=22% Similarity=0.322 Sum_probs=489.5
Q ss_pred HHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSE-TVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1091)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1091)
+++++++++++++ .+++++++.++..++....|++++.++|.......... ..... ..++.+++++++..++.+++.
T Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (574)
T PRK11160 4 LLPFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYM-LPAAGVRGAAIGRTAGRYGER 81 (574)
T ss_pred hHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH-hHHHHHHHHHHHHHHHHHHHH
Confidence 4456677766554 34566777777777777888899999996531111000 01111 112234445567788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001371 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1091)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 204 (1091)
++.++.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...+..++..++.+++.++++++++|
T Consensus 82 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (574)
T PRK11160 82 LVSHDATFRVLTHLRVFTFSKLLPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDL 160 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001371 205 LLTLVMLSSIPLLAM-SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1091)
Q Consensus 205 ~l~l~~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1091)
.+++++++.+|+..+ +..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+.
T Consensus 161 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (574)
T PRK11160 161 TLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQ 240 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888887655 4466777778888888899999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001371 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTG-SMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1091)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1091)
....+....+..++..+..++++++|+++ ..|.+++|.+++++.+.... ..++..+...+..++.+..+.+|+.++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~ 319 (574)
T PRK11160 241 ANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITE 319 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888877777777777777888889888 47899999988876654332 34666666677888899999999999998
Q ss_pred cCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcE
Q 001371 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1091)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~ 442 (1091)
.+++.+.... ....+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 320 ~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 320 QKPEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred CCCCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 7665332111 1112234679999999999753 357999999999999999999999999999999999999999999
Q ss_pred EEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCC
Q 001371 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1091)
Q Consensus 443 I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~ 522 (1091)
|.+||+|+++++.+++|++|+||||||+||++||+|||++|+|++++++++++++.+++++++++ |+||||.|||+|.+
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~ 475 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQ 475 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeec
Q 001371 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 523 LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~G 602 (1091)
|||||||||+||||++++|+|||||||||+||+++|+.|+++|++..+++|+|+||||+++++.||+|++|++|+|+|.|
T Consensus 476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchhHHHHH
Q 001371 603 THSKLVEDPEGAYSQLIR 620 (1091)
Q Consensus 603 t~~eL~~~~~~~y~~l~~ 620 (1091)
+|+||+++ +|.|+++++
T Consensus 556 ~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 556 THQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred CHHHHHhc-CcHHHHHHh
Confidence 99999998 899999986
No 21
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.3e-87 Score=838.90 Aligned_cols=557 Identities=25% Similarity=0.379 Sum_probs=493.2
Q ss_pred chHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1091)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1091)
..+++++++++++++ .+...++++++..++....|++++.++|.+....+. ..+....+.++++.++..++.+++
T Consensus 133 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~ 207 (694)
T TIGR03375 133 RPKHWFWSTLKESWP-LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAF----ETLWVLAIGVALAIVFDFVLKTLR 207 (694)
T ss_pred ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcH----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667776665544 344555566666677778888999999986533221 222223334444556677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001371 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1091)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 203 (1091)
.++..+.+.++..++|..+|+|++++|+.+ +++ ++|++++|+ +|++.+++++...+...+..+..+++.++++++++
T Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~-~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (694)
T TIGR03375 208 SYFLDVAGKKADLILSAKLFERVLGLRMEA-RPA-SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIG 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCC-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 565 899999999 79999999998887777778888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001371 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1091)
Q Consensus 204 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1091)
|.+++++++.+|+++++..++.++.++..++.++..++..+.+.|+++|+++||.|++|+.+.++|.+...+..+...+.
T Consensus 285 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR03375 285 GPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKS 364 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001371 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1091)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1091)
.........+..++..+..++++++|++++..|.+|+|.+++++.+......|+..+...+..++....+.+|+.++++.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~ 444 (694)
T TIGR03375 365 RFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQL 444 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888777788888888889999999999999999999998888888889999999999999999999999999987
Q ss_pred CCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE
Q 001371 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1091)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I 443 (1091)
+++.+... .....+...+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 445 ~~e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I 522 (694)
T TIGR03375 445 PVERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522 (694)
T ss_pred CCCCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 66533211 111112234679999999999743 4679999999999999999999999999999999999999999999
Q ss_pred EECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCC
Q 001371 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1091)
Q Consensus 444 ~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~L 523 (1091)
.+||+|+++++.+++|++|+||||||++|+|||||||++++|+++++++++|++.|+++++|++||+||||.|||+|.+|
T Consensus 523 ~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~L 602 (694)
T TIGR03375 523 LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602 (694)
T ss_pred EECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecC
Q 001371 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 524 SGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 603 (1091)
||||||||+||||++++|+|||||||||+||+++|+.|+++|.+..+++|+|+||||+++++.||+|++|++|+|+|+|+
T Consensus 603 SgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~ 682 (694)
T TIGR03375 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGP 682 (694)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCC
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred hhHHhcC
Q 001371 604 HSKLVED 610 (1091)
Q Consensus 604 ~~eL~~~ 610 (1091)
|+||+++
T Consensus 683 ~~eLl~~ 689 (694)
T TIGR03375 683 KDQVLEA 689 (694)
T ss_pred HHHHHHH
Confidence 9999875
No 22
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-87 Score=756.94 Aligned_cols=552 Identities=26% Similarity=0.408 Sum_probs=487.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 64 GSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYL 143 (1091)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 143 (1091)
..++..+.++....+.+++...++.+.... . ...+..+...++++.++..++.+.+.....+.+.++...+|+.++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~-~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQ-L---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666677777777654331 1 233444556667777888899999999999999999999999999
Q ss_pred HHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001371 144 KTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGV 223 (1091)
Q Consensus 144 ~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~ 223 (1091)
+|+.++++.+-.+. ++|+..+.+...++.++.++...++.+....+..+..++.+++++|..+++++++.|++.+++..
T Consensus 81 ~~l~~~gp~~~~~~-~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 81 DKLAKLGPAFIAQK-PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHHhCChhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998776 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 224 MAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYA 303 (1091)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1091)
+++..++..++....+....+++.|.++|+.|+|.|+..+...+++.+...++++..++.-+.......+..+++..+.+
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888877777777777777766
Q ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCCC
Q 001371 304 LSVWYGGKLILE-EGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRG 382 (1091)
Q Consensus 304 ~~~~~g~~l~~~-~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1091)
++..+.+..... |.++....+.++...--.+.|+..+...+..-..+..+++.+..+++.+++..............+.
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 655544433444 7888777776666666668899999999999888988888888888776653322211011111233
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
+|+++|++|.||+. +++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+.||+++
T Consensus 320 ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 56667999999853 3899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC
Q 001371 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1091)
Q Consensus 463 a~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~ 542 (1091)
+||||+|+||+|||||||++++|++++|++++|++.+++.+|++. |+|+||+|||+|.+|||||+||++||||++++++
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHHHHH
Q 001371 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1091)
Q Consensus 543 IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~~ 622 (1091)
++|||||||+||.+||+.|.+.|.++.++||+|+||||+..+++||+|+|||+|+++|+|+|+||.++ +|.|++|++.|
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q 555 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQ 555 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 89999999887
Q ss_pred hh
Q 001371 623 EA 624 (1091)
Q Consensus 623 ~~ 624 (1091)
+.
T Consensus 556 ~~ 557 (559)
T COG4988 556 EG 557 (559)
T ss_pred hc
Confidence 64
No 23
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.2e-86 Score=816.45 Aligned_cols=567 Identities=31% Similarity=0.523 Sum_probs=497.6
Q ss_pred HHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1091)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1091)
+++++++.+++++. +++.+++.++..++....|++++.++|........ ..+...++.+++++++..++.+++.+
T Consensus 13 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (582)
T PRK11176 13 FRRLWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR----SVLKWMPLVVIGLMILRGITSFISSY 87 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666655443 34445555666666677788888888876532111 11222233344456667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001371 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1091)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 205 (1091)
+..+.+.++..++|..+|+++++.|..+|++. ++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.
T Consensus 88 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (582)
T PRK11176 88 CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999887 99999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1091)
Q Consensus 206 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1091)
+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+...
T Consensus 167 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T PRK11176 167 LSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001371 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1091)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1091)
.......+..++..+...+++++|++++..|.+++|++++++.+......|+..+...+..++....+.+|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 326 (582)
T PRK11176 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQ 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 87777777777777778888889999999999999999888877777778999999889999999999999999987654
Q ss_pred CCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEE
Q 001371 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1091)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~i 445 (1091)
+.+... ...++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 327 ~~~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i 402 (582)
T PRK11176 327 EKDEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILL 402 (582)
T ss_pred cCCCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEE
Confidence 422111 1112234579999999999753 468999999999999999999999999999999999999999999999
Q ss_pred CCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCC-CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCC
Q 001371 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1091)
Q Consensus 446 dg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 524 (1091)
||+|+++++.+++|++|+||||||++|++||||||++|+++ +++++++++++.+++++++++||+|+||.+||+|.+||
T Consensus 403 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LS 482 (582)
T PRK11176 403 DGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482 (582)
T ss_pred CCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCC
Confidence 99999999999999999999999999999999999999764 79999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecCh
Q 001371 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 525 GGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~ 604 (1091)
|||||||+||||++++|+||||||||||||+++|+.+.+.|.+..+++|+|+||||+++++.||+|++|++|+|+|.|+|
T Consensus 483 GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~ 562 (582)
T PRK11176 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTH 562 (582)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCchhHHHHHHHh
Q 001371 605 SKLVEDPEGAYSQLIRLQE 623 (1091)
Q Consensus 605 ~eL~~~~~~~y~~l~~~~~ 623 (1091)
+||+++ ++.|+++++.|.
T Consensus 563 ~~l~~~-~~~y~~l~~~~~ 580 (582)
T PRK11176 563 AELLAQ-NGVYAQLHKMQF 580 (582)
T ss_pred HHHHhC-CChHHHHHHHHh
Confidence 999998 899999997653
No 24
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.3e-85 Score=807.61 Aligned_cols=567 Identities=25% Similarity=0.344 Sum_probs=480.3
Q ss_pred HHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1091)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1091)
+++++.|.+++++ .+++.+++.++..++....|.+++.++|.+....+.. . .....+++.++++.++..++.+++.+
T Consensus 11 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (592)
T PRK10790 11 LKRLLAYGSPWRK-PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLP-L-GLVAGLAAAYVGLQLLAAGLHYAQSL 87 (592)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-h-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444 3455666667777788888999999999764322211 1 11111223344445566778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001371 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1091)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 205 (1091)
.....+.++..++|..+|+++++.|.++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (592)
T PRK10790 88 LFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR 166 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999887 99999999999999999999999988999998888998999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1091)
Q Consensus 206 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1091)
+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+...
T Consensus 167 l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (592)
T PRK10790 167 MALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLR 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988898888777788888888888888889999999999999999999999999999999888877777666665
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001371 286 AAGIG-LGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1091)
Q Consensus 286 ~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~ 364 (1091)
..+.. ..+..++..+...+++++++. +..|.+++|.+++++.+......|+..+......+..+..+.+|+.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 325 (592)
T PRK10790 247 LDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGP 325 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 54432 222223322222222233333 5789999999999888877778899999999999999999999999998765
Q ss_pred CCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEE
Q 001371 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1091)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~ 444 (1091)
++..... . .....++|+|+||+|+|++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.
T Consensus 326 ~~~~~~~---~-~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 326 RQQYGND---D-RPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred CccCCCC---c-cCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 4321111 1 1222457999999999974 35799999999999999999999999999999999999999999999
Q ss_pred ECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCC
Q 001371 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1091)
Q Consensus 445 idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 524 (1091)
+||+|+++++.+++|++|+||||||+||+|||||||++|+ ++++++++++++.++++++|++||+||||.+||+|.+||
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LS 478 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 9999999999999999999999999999999999999998 589999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecCh
Q 001371 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 525 GGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~ 604 (1091)
|||||||+||||+++||||+|||||||+||+++|+.|.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~ 558 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTH 558 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCchhHHHHHHHhhc
Q 001371 605 SKLVEDPEGAYSQLIRLQEAN 625 (1091)
Q Consensus 605 ~eL~~~~~~~y~~l~~~~~~~ 625 (1091)
+||+++ ++.|+++++.|...
T Consensus 559 ~~L~~~-~~~y~~l~~~~~~~ 578 (592)
T PRK10790 559 QQLLAA-QGRYWQMYQLQLAG 578 (592)
T ss_pred HHHHhC-CCHHHHHHHHHhhh
Confidence 999998 89999999877544
No 25
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-86 Score=737.31 Aligned_cols=570 Identities=26% Similarity=0.383 Sum_probs=471.8
Q ss_pred HHHHhhhcChhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 46 FYKLFTFADSADTA----LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1091)
Q Consensus 46 ~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1091)
.+.+..|..+...+ .++.++++.+.+-+.....|.+++..+|........+.........++.+.+..++..++..
T Consensus 13 ~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~e 92 (591)
T KOG0057|consen 13 LRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNE 92 (591)
T ss_pred HHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44555554443221 23333344444456677788899999997631111112222333345566777788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 001371 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF-LIAF 200 (1091)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~ 200 (1091)
++...+.++.+++..+.-.++|+++++++.++|.+. .+|++.+++..-...|..++.-.+..++..++.+.... .+..
T Consensus 93 l~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~ 171 (591)
T KOG0057|consen 93 LRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSR-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYY 171 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCC-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887 89999999999999999888777766666555444433 4444
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 001371 201 IKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSG 280 (1091)
Q Consensus 201 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 280 (1091)
..++..+++.+..+..+..+......+..+..++.+++.++..+.+.|.+.|-.+||.||.|+++.++|...+.+..+..
T Consensus 172 ~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~ 251 (591)
T KOG0057|consen 172 KFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAG 251 (591)
T ss_pred HhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 56777777777777777766666677777777888888999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 281 VQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360 (1091)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~ 360 (1091)
.+.....++....-..+..+..+.+...|..-+..+.+|.|.++.......++..|+..+...+..+.++..-+...+..
T Consensus 252 ~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l 331 (591)
T KOG0057|consen 252 LKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFIL 331 (591)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 88877777766666666666666666777766888999999998877777788888888877777776665555555444
Q ss_pred hccCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC
Q 001371 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440 (1091)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~ 440 (1091)
......+.. ...+....++.|+|+||+|+|+ +++++|+++||+||+||+|||||++||||||++++|+||++ ++
T Consensus 332 ~~~~~~i~~---~~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~s 405 (591)
T KOG0057|consen 332 LEVDEDIQE---AALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YS 405 (591)
T ss_pred hhhhhhhhh---ccCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cC
Confidence 332221111 1112233456799999999997 35679999999999999999999999999999999999999 99
Q ss_pred cEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCC
Q 001371 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520 (1091)
Q Consensus 441 G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G 520 (1091)
|+|+|||+|+++++++++|+.|||||||..|||+||.+||.||+|.+++||+.++||.+++||-|.+||+||+|.|||+|
T Consensus 406 G~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG 485 (591)
T KOG0057|consen 406 GSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERG 485 (591)
T ss_pred CcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEee
Q 001371 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive 600 (1091)
..||||||||||||||++|||||++||||||+||++||+.+.+.|.+...+||+|+|+||++++++||+|++||||+++|
T Consensus 486 ~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e 565 (591)
T KOG0057|consen 486 LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKE 565 (591)
T ss_pred cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhcCCCchhHHHHHHHh
Q 001371 601 KGTHSKLVEDPEGAYSQLIRLQE 623 (1091)
Q Consensus 601 ~Gt~~eL~~~~~~~y~~l~~~~~ 623 (1091)
.|||+||+++ .+.|+.+|..|.
T Consensus 566 ~gth~ell~~-s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 566 YGTHSELLAP-SELYADLWTTQT 587 (591)
T ss_pred eccHHHHhhh-hhHHHHHhcccc
Confidence 9999999995 899999997664
No 26
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.8e-85 Score=816.93 Aligned_cols=568 Identities=28% Similarity=0.409 Sum_probs=502.4
Q ss_pred chHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1091)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1091)
..+++++++++++++. +...++++++..+.....|++++.++|.+....+. ..+..+++.++++.++..++.+++
T Consensus 125 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~----~~l~~l~~~~~~~~~~~~~~~~l~ 199 (694)
T TIGR01846 125 FGFSWFIPAIIRYRKQ-FREVLLISLALQLFALVTPLLFQVVIDKVLVHRGL----STLSVLALAMLAVAIFEPALGGLR 199 (694)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777776655443 34455555566666677888999999987533221 223333444555666678889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001371 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1091)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 203 (1091)
.++....+.++..++|..+|+|++++|+.+|++. ++|++++|+ +|++.+++++.......+..+..+++.++++++++
T Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 277 (694)
T TIGR01846 200 TYLFAHLTSRIDVELGARLYRHLLGLPLGYFESR-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYS 277 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCC-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 999999999 69999999988777777777777777788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001371 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1091)
Q Consensus 204 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1091)
|.+++++++.+|+++++..++.++.++..++..+..++..+.+.|.++|+++||+++.|+.+.++|.+...+..+...+.
T Consensus 278 ~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 357 (694)
T TIGR01846 278 PTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRV 357 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999889999988888888889999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001371 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1091)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1091)
....+....+..++..+..++++++|++++..|.+|+|.++++..+......|+..+...+..++.+..+.+|+.++++.
T Consensus 358 ~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 437 (694)
T TIGR01846 358 TNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNS 437 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888877777788888888889999999999999999999988887788889999999999999999999999999987
Q ss_pred CCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE
Q 001371 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1091)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I 443 (1091)
+++.+... ....+...+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 438 ~~e~~~~~--~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I 514 (694)
T TIGR01846 438 PTEPRSAG--LAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514 (694)
T ss_pred CCCccCCC--CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 66533211 11122335679999999999743 4579999999999999999999999999999999999999999999
Q ss_pred EECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCC
Q 001371 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1091)
Q Consensus 444 ~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~L 523 (1091)
.+||+|+++++.+++|++|+||||+|++|++||||||++++|+++++++++|++.+++++++++||+|+||.+||+|.+|
T Consensus 515 ~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~L 594 (694)
T TIGR01846 515 LVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594 (694)
T ss_pred EECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecC
Q 001371 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 524 SGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 603 (1091)
||||||||+||||++++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+
T Consensus 595 SgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~ 674 (694)
T TIGR01846 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGR 674 (694)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCchhHHHHHHH
Q 001371 604 HSKLVEDPEGAYSQLIRLQ 622 (1091)
Q Consensus 604 ~~eL~~~~~~~y~~l~~~~ 622 (1091)
|+||+++ +|.|+++++.|
T Consensus 675 ~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 675 HEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred HHHHHHc-CChHHHHHHhh
Confidence 9999998 89999998754
No 27
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=9.5e-85 Score=799.12 Aligned_cols=565 Identities=33% Similarity=0.527 Sum_probs=506.6
Q ss_pred HHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 47 YKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTC 126 (1091)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1091)
++++++.++.++ .+++++++.++.+++.+..|++++.++|........ ..+...+..++++.++..++.+++.+.
T Consensus 3 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~ 77 (571)
T TIGR02203 3 RRLWSYVRPYKA-GLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDR----SVLWWVPLVVIGLAVLRGICSFVSTYL 77 (571)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554433 466777778888888888999999999865432111 222333334556666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001371 127 WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLL 206 (1091)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 206 (1091)
..+.+.++...+|..+++++++.|.+++++. +.|++++|+++|++.+++++...+..++..+..+++.++++++++|.+
T Consensus 78 ~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l 156 (571)
T TIGR02203 78 LSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQL 156 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999886 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 207 TLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLA 286 (1091)
Q Consensus 207 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 286 (1091)
++++++..|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.++.|+.+.++|.+..++..+...+....
T Consensus 157 ~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (571)
T TIGR02203 157 TLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSA 236 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001371 287 AGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPE 366 (1091)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 366 (1091)
.+....+..++..+..++++++|++++..|.+|+|.++++..+......|+..+......++.++.+.+|+.++++.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 316 (571)
T TIGR02203 237 GSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPE 316 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88877777788888888889999999999999999999998888888889999999999999999999999999987655
Q ss_pred CCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEEC
Q 001371 367 IDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1091)
Q Consensus 367 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~id 446 (1091)
.+... ....+..++|+++||+|+|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+|+|++|+|.+|
T Consensus 317 ~~~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~ 392 (571)
T TIGR02203 317 KDTGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLD 392 (571)
T ss_pred CCCCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC
Confidence 32211 1112234579999999999754 4689999999999999999999999999999999999999999999999
Q ss_pred CccccCCChHHHhhceeEEeccCccccccHHHHhccCCC-CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCCh
Q 001371 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1091)
Q Consensus 447 g~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSG 525 (1091)
|+|+++++.+++|++|+||||+|++|+|||||||+++++ +.++++++++++.|++++++.+||+|+||+|||+|.+|||
T Consensus 393 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSg 472 (571)
T TIGR02203 393 GHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSG 472 (571)
T ss_pred CEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCH
Confidence 999999999999999999999999999999999999986 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChh
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~ 605 (1091)
||||||+||||++++|||+|||||||+||+++|+.+.+.|++..++||+|+||||++.++.||+|++|++|++++.|+|+
T Consensus 473 GqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~ 552 (571)
T TIGR02203 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHN 552 (571)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHH
Q 001371 606 KLVEDPEGAYSQLIRLQ 622 (1091)
Q Consensus 606 eL~~~~~~~y~~l~~~~ 622 (1091)
|++++ ++.|+++++.+
T Consensus 553 ~l~~~-~~~~~~~~~~~ 568 (571)
T TIGR02203 553 ELLAR-NGLYAQLHNMQ 568 (571)
T ss_pred HHHHc-CCHHHHHHHHh
Confidence 99987 78999987754
No 28
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.2e-84 Score=789.28 Aligned_cols=526 Identities=23% Similarity=0.328 Sum_probs=451.9
Q ss_pred HHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 47 YKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTC 126 (1091)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1091)
++++++.+++++ .+++.+++.++..++....|++++.++|..... +. .. ......+.++++.++..++.++..++
T Consensus 2 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (529)
T TIGR02868 2 LRILPLLQPRTR-RLVVAILLGALALGSAVALLGVSAWLISRAAEM-PP--VL-YLSVAAVAVRAFGIGRAVFRYLERLV 76 (529)
T ss_pred hhHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ch--hH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666554 345566666777777778889999999975432 11 00 11111112223455667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001371 127 WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLL 206 (1091)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 206 (1091)
..+.+.++..++|.++|+|++++|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+
T Consensus 77 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 155 (529)
T TIGR02868 77 GHDAALRSLGRLRVRVYDRLARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPA 155 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8999999999999999999999999999887 999999999999999999999888888999989999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 207 TLVMLSSIPLLAMSGGVMAIM-ISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1091)
Q Consensus 207 ~l~~l~~~pl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1091)
++++++.+|++.++..++.++ .++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+...
T Consensus 156 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (529)
T TIGR02868 156 ALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAAR 235 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888876666555444 4556667777889999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001371 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1091)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1091)
..+....+..++..+..++++++|++++..|.+++|.+++++.+......|+..+...+..++.+..+.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (529)
T TIGR02868 236 ATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKG 315 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88887777777777888888899999999999999999998887777778888888888899999999999999998765
Q ss_pred CCCcCCCC-CcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEE
Q 001371 366 EIDAYDTK-GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1091)
Q Consensus 366 ~~~~~~~~-~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~ 444 (1091)
+.+..+.. .....+..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 393 (529)
T TIGR02868 316 PRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT 393 (529)
T ss_pred CcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 43221110 11111224579999999999753 4699999999999999999999999999999999999999999999
Q ss_pred ECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCC
Q 001371 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1091)
Q Consensus 445 idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 524 (1091)
+||+|++++ .+++|++|+||||||+||+|||||||++|+|++++|++++|++.|++++||++||+||||+|||+|.+||
T Consensus 394 i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 472 (529)
T TIGR02868 394 LDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLS 472 (529)
T ss_pred ECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCC
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCc
Q 001371 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581 (1091)
Q Consensus 525 GGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl 581 (1091)
||||||||||||+++|||||||||||||||+++|+.|++.|.+..+++|+|+||||+
T Consensus 473 GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 473 GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999999988999999999996
No 29
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=6.3e-84 Score=791.49 Aligned_cols=566 Identities=29% Similarity=0.414 Sum_probs=486.0
Q ss_pred hHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1091)
Q Consensus 45 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1091)
.+++++++.++++. .+.+.+++.++..++.+..|++++.++|.+.... . .....+.+++++++..+..++..
T Consensus 6 ~~~~l~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~ 77 (588)
T PRK13657 6 LYARVLQYLGAEKR-LGILLAVANVLLAAATFAEPILFGRIIDAISGKG---D----IFPLLAAWAGFGLFNIIAGVLVA 77 (588)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666776655433 3445566666667777788889999999764321 1 11112222233333444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001371 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1091)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 204 (1091)
++..+...++..++|..+|+|++++|+.+|++. ++|++++|+++|++.+.+.+...+..++..++.+++.+++++.++|
T Consensus 78 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (588)
T PRK13657 78 RHADRLAHRRRLAVLTEYFERIIQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNW 156 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666777778899999999999999887 9999999999999999988887887888888888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1091)
Q Consensus 205 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1091)
.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.|+.++.+.+++.+..++..+...+..
T Consensus 157 ~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
T PRK13657 157 RLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVL 236 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888889999988888888999999999999999999999999999999999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001371 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1091)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~ 364 (1091)
...+....+..++..+..++++++|++++.+|.+|+|.+++++.+......|+..+...+..+..+..+.+|+.+.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~ 316 (588)
T PRK13657 237 SWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAV 316 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77777767777777777788889999999999999999999888877778888898888888999999999999998765
Q ss_pred CCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEE
Q 001371 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1091)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~ 444 (1091)
++.+... .....++..+.|+++||+|+||+ ++++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|.
T Consensus 317 ~~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 317 PDVRDPP-GAIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred cccCCCC-CCCCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 4422111 11111223357999999999974 24799999999999999999999999999999999999999999999
Q ss_pred ECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCC
Q 001371 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1091)
Q Consensus 445 idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 524 (1091)
+||+|+++++.+++|++|+||||+|++|+|||||||++++|++++++++++++.++++++++++|+|+||.+||+|.+||
T Consensus 394 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS 473 (588)
T PRK13657 394 IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS 473 (588)
T ss_pred ECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecCh
Q 001371 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 525 GGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~ 604 (1091)
|||||||+||||++++|+|+|||||||+||+++|+.+.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCchhHHHHHHHh
Q 001371 605 SKLVEDPEGAYSQLIRLQE 623 (1091)
Q Consensus 605 ~eL~~~~~~~y~~l~~~~~ 623 (1091)
+||+++ ++.|+++++.+.
T Consensus 554 ~~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 554 DELVAR-GGRFAALLRAQG 571 (588)
T ss_pred HHHHHC-CChHHHHHHHhh
Confidence 999988 899999998664
No 30
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.4e-84 Score=857.71 Aligned_cols=567 Identities=20% Similarity=0.278 Sum_probs=463.6
Q ss_pred chHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1091)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1091)
..+..+..|++...+...++.+++.++..++....+++++.+.|......+... ...+..++++++++..++.++.
T Consensus 950 v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~----~~~~~~iy~~l~i~~~~~~~~~ 1025 (1522)
T TIGR00957 950 VELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNN----TSLRLSVYGALGILQGFAVFGY 1025 (1522)
T ss_pred ccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC----cchHHHHHHHHHHHHHHHHHHH
Confidence 344445555443222222222333334444555667777777764211101100 1112334556667777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001371 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1091)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 203 (1091)
.++..+.+.+...++|.+++++++++|++||++. ++|+++||+++|++.+++.+...+..++..++.+++.++++++.+
T Consensus 1026 ~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~ 1104 (1522)
T TIGR00957 1026 SMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERT-PSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLAT 1104 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999986 999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 001371 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1091)
Q Consensus 204 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1091)
|.+++++++++++++++..++.+..++..+...+..+...+++.|+++|+++||+|++|+.+.+++.+..+...+..+..
T Consensus 1105 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~ 1184 (1522)
T TIGR00957 1105 PIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPS 1184 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777766666666666777777777777777777889999999999999999999999999999888887777665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001371 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLIL-EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1091)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1091)
.....+......++.. .++++.+...+. .+.+++|.+..++.+......++..+...+..+.....+.+|+.++++
T Consensus 1185 ~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~ 1261 (1522)
T TIGR00957 1185 IVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSE 1261 (1522)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444333332222222 223333444443 578999999888888888888999999999999999999999999997
Q ss_pred cCCCCCcCCCCCccc--CCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC
Q 001371 363 RKPEIDAYDTKGKIL--DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440 (1091)
Q Consensus 363 ~~~~~~~~~~~~~~~--~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~ 440 (1091)
.++|.+.......++ .+.+|.|+|+||+|+|+++ .+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++
T Consensus 1262 ~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~ 1340 (1522)
T TIGR00957 1262 TEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340 (1522)
T ss_pred CCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC
Confidence 766543111111111 2345789999999999753 3579999999999999999999999999999999999999999
Q ss_pred cEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCC
Q 001371 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520 (1091)
Q Consensus 441 G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G 520 (1091)
|+|.|||+|+++++++++|++|+||||||+||+|||||||.... +++|+++++|++.|+++++|+++|+||||+|||+|
T Consensus 1341 G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1419 (1522)
T TIGR00957 1341 GEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGG 1419 (1522)
T ss_pred CeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCC
Confidence 99999999999999999999999999999999999999999443 58999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEee
Q 001371 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive 600 (1091)
.+|||||||||||||||+++|+||||||||||||++||+.|++.|++.++++|+|+||||++++.+||+|+|||+|+|+|
T Consensus 1420 ~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1420 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhcCCCchhHHHHHH
Q 001371 601 KGTHSKLVEDPEGAYSQLIRL 621 (1091)
Q Consensus 601 ~Gt~~eL~~~~~~~y~~l~~~ 621 (1091)
.|+|+||+++ +|.|+++++.
T Consensus 1500 ~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1500 FGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred ECCHHHHHhC-CCHHHHHHHH
Confidence 9999999998 7999999875
No 31
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.7e-83 Score=781.32 Aligned_cols=564 Identities=27% Similarity=0.388 Sum_probs=487.8
Q ss_pred HHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1091)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1091)
++++++|++++++ .+++.+++.++..++.+..|++++.++|.+... +. .. ...+.+++++++..+..++..+
T Consensus 7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~-~~-----~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (585)
T TIGR01192 7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSK-SD-----VL-PTLALWAGFGVFNTIAYVLVAR 78 (585)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc-----HH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777766554 455667777777888888999999999976432 11 01 1111122233344445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001371 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1091)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 205 (1091)
....+..++..++|.++|+|++++|+++|+++ ++|++++|+++|++.+++.+...+...+..++.+++.+++++.++|.
T Consensus 79 ~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (585)
T TIGR01192 79 EADRLAHGRRATLLTEAFGRIISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWR 157 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777778899999999999999887 89999999999999999998888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1091)
Q Consensus 206 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1091)
+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+...
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (585)
T TIGR01192 158 LSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLD 237 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888999999999999999999999999999999999998888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001371 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1091)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1091)
..+....+..++..+..++++++|++++..|.+++|.+++++.+......|+..+...+..+..+..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 317 (585)
T TIGR01192 238 WWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVF 317 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 77776666667777777788889999999999999999998877777778888888888889999999999999987655
Q ss_pred CCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEE
Q 001371 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1091)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~i 445 (1091)
+.+... .....+...+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 318 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 318 QREEPA-DAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred cccCCc-cCCCCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 432211 11111223457999999999974 246999999999999999999999999999999999999999999999
Q ss_pred CCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCCh
Q 001371 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1091)
Q Consensus 446 dg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSG 525 (1091)
||+|+++++.+++|++++||||+|++|++||||||+++.|++++++++++++.+++++++.++|+|+||.+||+|.+|||
T Consensus 395 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChh
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~ 605 (1091)
||||||+||||++++|+|+|||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|+|+
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHH
Q 001371 606 KLVEDPEGAYSQLIRLQ 622 (1091)
Q Consensus 606 eL~~~~~~~y~~l~~~~ 622 (1091)
||+++ +|.|+++++.+
T Consensus 555 ~l~~~-~~~y~~l~~~~ 570 (585)
T TIGR01192 555 ELIQK-DGRFYKLLRRS 570 (585)
T ss_pred HHHHC-CChHHHHHHhC
Confidence 99988 89999999765
No 32
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.7e-83 Score=786.47 Aligned_cols=570 Identities=34% Similarity=0.555 Sum_probs=494.8
Q ss_pred HHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1091)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1091)
++.++++.+++++ .+.+.+++.++.+++....|++++.++|......+. ......+.+++++.++..++.+++.+
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (576)
T TIGR02204 6 LAALWPFVRPYRG-RVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS----GLLNRYFAFLLVVALVLALGTAARFY 80 (576)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666655443 345566667777778888899999999974422111 11222233333444456677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001371 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1091)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 205 (1091)
....++.++..++|..+++++++.|..+|++. +.|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.
T Consensus 81 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (576)
T TIGR02204 81 LVTWLGERVVADIRRAVFAHLISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPK 159 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88899999999999999999999999999886 89999999999999999999888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1091)
Q Consensus 206 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1091)
+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.++.|+.+.++|.+..++..+...+...
T Consensus 160 l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (576)
T TIGR02204 160 LTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIR 239 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888899999999999999999999999999999999999999999999999998888887777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001371 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1091)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1091)
.......+..++..+..++++++|++++..|.+|+|.++++..+......|+..+...+..+..+..+.+|+.++++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~ 319 (576)
T TIGR02204 240 TRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEP 319 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 66666665556666667777888999999999999999988888777788999999999999999999999999988655
Q ss_pred CCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEE
Q 001371 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1091)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~i 445 (1091)
+.+..........+..+.|+++||+|+||+++++++|+|+||+|+|||+++|+||||||||||+++|+|+|+|++|+|.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i 399 (576)
T TIGR02204 320 DIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILL 399 (576)
T ss_pred cCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 42221111111112235799999999998543468999999999999999999999999999999999999999999999
Q ss_pred CCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCCh
Q 001371 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1091)
Q Consensus 446 dg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSG 525 (1091)
||+|+++++.+++|++|+||||+|++|+|||||||++|+|+.++++++++++.++++++++++|+|+||++||+|.+|||
T Consensus 400 ~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSg 479 (576)
T TIGR02204 400 DGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSG 479 (576)
T ss_pred CCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChh
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~ 605 (1091)
||||||+||||++++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|+
T Consensus 480 Gq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHH
Q 001371 606 KLVEDPEGAYSQLIRLQ 622 (1091)
Q Consensus 606 eL~~~~~~~y~~l~~~~ 622 (1091)
+|+++ ++.|+++++.|
T Consensus 560 ~l~~~-~~~~~~l~~~~ 575 (576)
T TIGR02204 560 ELIAK-GGLYARLARLQ 575 (576)
T ss_pred HHHHc-CChHHHHHhhc
Confidence 99987 89999988654
No 33
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.1e-83 Score=781.53 Aligned_cols=544 Identities=25% Similarity=0.371 Sum_probs=476.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 001371 72 GLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDV 151 (1091)
Q Consensus 72 ~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~ 151 (1091)
.++....|++++.++|.+...... ......++..++++.++..++.++..++....+.++..++|.++|++++++|+
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQHMT---TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 344556777889999976432111 11122233334444556677788888888889999999999999999999999
Q ss_pred hhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 152 AFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA-FIKGWLLTLVMLSSIPLLAMSGGVMAIMISK 230 (1091)
Q Consensus 152 ~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~ 230 (1091)
.+|++. ++|++++|+++|++.++..+...+..++..++.+++.++++ +.++|.+++++++.+|+.+++...+.++.++
T Consensus 85 ~~~~~~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 85 EFYLRH-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHcCC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 89999999999999999887777777777766655555554 5899999999999999999998899999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 231 MSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGG 310 (1091)
Q Consensus 231 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (1091)
..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+...+..+...+.....+....+...+..+..++++++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999998888888888777777666666666677777888999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCCCcEEEEeEE
Q 001371 311 KLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVY 390 (1091)
Q Consensus 311 ~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~vs 390 (1091)
+++..|.+|+|.+++++.+......|+..+...+..+..+..+.+|+.++++.+++.+... ...+..++.|+++||+
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~ 320 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQ 320 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEE
Confidence 9999999999999998888887888998888888999999999999999998765432211 1112234579999999
Q ss_pred EECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCc
Q 001371 391 FSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470 (1091)
Q Consensus 391 f~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~ 470 (1091)
|+|+.. ++++|+|+||+|+||++++||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||+|+
T Consensus 321 ~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399 (569)
T ss_pred EECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe
Confidence 999753 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCC
Q 001371 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1091)
Q Consensus 471 Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~t 550 (1091)
||++||||||++|.|++++++++++++.+++++++.++|+|+||.+||+|.+|||||||||+||||++++|+|+||||||
T Consensus 400 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 400 LFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred eccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHHHHHhh
Q 001371 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1091)
Q Consensus 551 SaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~~~~ 624 (1091)
|+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+++|+|+||+++ ++.|+++++.|..
T Consensus 480 s~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 999999999999999998889999999999999999999999999999999999999987 8999999987754
No 34
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.1e-83 Score=846.16 Aligned_cols=569 Identities=19% Similarity=0.263 Sum_probs=430.8
Q ss_pred CchHHHHhhhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 43 SVPFYKLFTFADSAD-TALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1091)
Q Consensus 43 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1091)
.+.+..+..|++... +..+++.+++.++..+.....+++++.+.|......+. ...+.+.+++++++..++.+
T Consensus 898 ~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~------~~~~~~i~~~l~~~~~i~~~ 971 (1622)
T PLN03130 898 VVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHG------PLFYNLIYALLSFGQVLVTL 971 (1622)
T ss_pred ccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc------hhHHHHHHHHHHHHHHHHHH
Confidence 345555555654311 11222222333333444445566677777643211111 12234445666777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1091)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 201 (1091)
++.++..+.+.+...++|.+++++++++|++||+++ ++|+++||+++|++.+++.+...+..++..++.+++.+++++.
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~-~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~ 1050 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTN-PLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGI 1050 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999999986 9999999999999999999999888899888888888888887
Q ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 001371 202 KGWLLTLVMLSSIPL-LAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSG 280 (1091)
Q Consensus 202 ~~~~l~l~~l~~~pl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 280 (1091)
++|... ++++.+++ ++.+..++.+..++..+......+...+++.|+++|+++||+|++++++.+++.+..+...+..
T Consensus 1051 ~~~~~~-~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~ 1129 (1622)
T PLN03130 1051 VSTISL-WAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFT 1129 (1622)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 777433 22222222 2222333444445555555566778899999999999999999999987777666555544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 281 VQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEG-YN-----GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAA 354 (1091)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-~t-----~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 354 (1091)
........+......+ +..+++++.+...+..+. .. .+.+..++.+.+....++..+......+.....+.
T Consensus 1130 ~~~~~~~~wl~~~l~~---~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sv 1206 (1622)
T PLN03130 1130 LVNMSSNRWLAIRLET---LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAV 1206 (1622)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111111111111 111112222222233221 11 12222222333334445555666667778899999
Q ss_pred HHHHHHhccCCCCCcCCCCC--cccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHH
Q 001371 355 FKMFETINRKPEIDAYDTKG--KILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI 432 (1091)
Q Consensus 355 ~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll 432 (1091)
+|+.++++.++|.+...... ...++.+|.|+|+||+|+|+++ .++||+|+||+|+|||++|||||||||||||+++|
T Consensus 1207 eRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL 1285 (1622)
T PLN03130 1207 ERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNAL 1285 (1622)
T ss_pred HHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 99999998776643211111 1112345789999999999642 35799999999999999999999999999999999
Q ss_pred hccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCc
Q 001371 433 ERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512 (1091)
Q Consensus 433 ~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~ 512 (1091)
+|+|+|++|+|.|||+|+++++++++|++|+||||||.||+|||||||.+++ +++|+++++|++.|+++++|+++|+||
T Consensus 1286 ~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GL 1364 (1622)
T PLN03130 1286 FRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGL 1364 (1622)
T ss_pred hCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCcccc
Confidence 9999999999999999999999999999999999999999999999999987 489999999999999999999999999
Q ss_pred ccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEE
Q 001371 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592 (1091)
Q Consensus 513 ~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iiv 592 (1091)
||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++.++++|+|+||||++++++||+|+|
T Consensus 1365 dt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlV 1444 (1622)
T PLN03130 1365 DAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILV 1444 (1622)
T ss_pred CccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCEEeeecChhHHhcCCCchhHHHHHHHhh
Q 001371 593 IHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1091)
Q Consensus 593 l~~G~Ive~Gt~~eL~~~~~~~y~~l~~~~~~ 624 (1091)
||+|+|+|.|+|+||+++++|.|++|++.+..
T Consensus 1445 Ld~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1445 LDAGRVVEFDTPENLLSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred EECCEEEEeCCHHHHHhCCCCHHHHHHHHcCh
Confidence 99999999999999998757999999976543
No 35
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-82 Score=706.53 Aligned_cols=554 Identities=22% Similarity=0.328 Sum_probs=455.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 58 TALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATR 137 (1091)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1091)
+..++++++++++..+......-+-|++|..-.-. .....+. +...+..+=+++++..+..|...+..+....++..+
T Consensus 15 ~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAia-g~~~~f~-~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~ 92 (573)
T COG4987 15 KFGLLLGIVLAILTLLASIGLLTLSGWFISASAIA-GLAYIFN-VMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSA 92 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc-cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33455666665555444444434446666542111 0101111 122233344778899999999999999999999999
Q ss_pred HHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHH
Q 001371 138 IRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLS-SIPL 216 (1091)
Q Consensus 138 lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~-~~pl 216 (1091)
+|.++|+++...++.-..+. ++||++||+..|++.+++.+-..+.+++..+..+++..+..-+++|.+++.+.. .+.+
T Consensus 93 lRv~~f~kl~p~sp~~~~r~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~ 171 (573)
T COG4987 93 LRVRLFEKLEPLSPALLLRY-RSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLL 171 (573)
T ss_pred HHHHHHHhhccCChHHHHhc-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988776 999999999999999999999999999998888888888777888877664443 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 217 LAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVML 296 (1091)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1091)
.+++...+.+..++..++..+..+...+.+.|.+.|....+.||.++.+.+.+++....+.+...+......+...+..+
T Consensus 172 lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l 251 (573)
T COG4987 172 LLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLL 251 (573)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777888888888999999999999999999999999999999999888888888888888887777766
Q ss_pred HHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCC
Q 001371 297 IVFCSYA-LSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEAS-PCLSAFGAGQAAAFKMFETINRKPEIDAYDTKG 374 (1091)
Q Consensus 297 ~~~~~~~-~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 374 (1091)
+.....+ .++|.+ ..+..|..+......+++..+....++..+. ..+....+...++.|+.++.+.+|+...++ .
T Consensus 252 ~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~--~ 328 (573)
T COG4987 252 IAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPD--E 328 (573)
T ss_pred HHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCc--c
Confidence 6665555 344443 3445566653222222222222223333333 344667788889999999998888765431 1
Q ss_pred cccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC
Q 001371 375 KILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1091)
Q Consensus 375 ~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~ 454 (1091)
+.+.. +..++++||+|+||++ +.++|+|+||++++||++||+|+||||||||+++|.|-|+|++|+|.++|.+++.++
T Consensus 329 ~~~~~-~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~ 406 (573)
T COG4987 329 QTATT-GQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLD 406 (573)
T ss_pred ccCCc-cceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCC
Confidence 11111 1279999999999964 568999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 455 ~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
.+.+|+.|++++|.++||++|+|||+.+++|+++||++++++++++|++++++.|+|++|.+||.|.+||||||||+|||
T Consensus 407 ~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlA 486 (573)
T COG4987 407 EQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA 486 (573)
T ss_pred hhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCch
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGA 614 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~ 614 (1091)
|+|++|+|++||||||.+||+.||+.+.+.|.+..+|||+|+||||+.-++.||+|+|||+|+|+|+|+|.||+++ +|.
T Consensus 487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~-~g~ 565 (573)
T COG4987 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-NGR 565 (573)
T ss_pred HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc-ccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997 999
Q ss_pred hHHHHH
Q 001371 615 YSQLIR 620 (1091)
Q Consensus 615 y~~l~~ 620 (1091)
|+++++
T Consensus 566 ~~~l~q 571 (573)
T COG4987 566 YKRLYQ 571 (573)
T ss_pred HHHHhc
Confidence 999875
No 36
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.8e-82 Score=833.81 Aligned_cols=513 Identities=20% Similarity=0.295 Sum_probs=409.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHH
Q 001371 105 VAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGK 184 (1091)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~ 184 (1091)
+...+++++++..++.+++.++..+.+.+...++|.+++++++++|+.||++. ++|+++||+++|++.+++.+...+..
T Consensus 952 ~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~-~~G~ilnr~s~Di~~id~~l~~~~~~ 1030 (1495)
T PLN03232 952 YIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN-PTGRVINRFSKDIGDIDRNVANLMNM 1030 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcC-CchHHHHHhHhhHHHHHHHHHHHHHH
Confidence 44456667777788888888888999999999999999999999999999986 99999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHH
Q 001371 185 FLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAM-SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEK 263 (1091)
Q Consensus 185 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 263 (1091)
++..++.+++.+++++.+++... ++++.+++.++ ...++.+..++..+......+...+++.|+++|+++||+|++|+
T Consensus 1031 ~~~~~~~~i~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~ 1109 (1495)
T PLN03232 1031 FMNQLWQLLSTFALIGTVSTISL-WAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYD 1109 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHH
Confidence 88888888877777777665332 22222222222 22233344444555566677888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC----CHHHHHH-HHHHHHHHHHHH
Q 001371 264 QAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILE-EGY----NGGQVVN-VMVAVLTGSMSL 337 (1091)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~----t~g~l~~-~~~~~~~~~~~l 337 (1091)
++.+++.+..+...+..........+.... +..+..+++++.+...+.. +.. ....++. ++.+......++
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 1186 (1495)
T PLN03232 1110 RMAKINGKSMDNNIRFTLANTSSNRWLTIR---LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLL 1186 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHH
Confidence 887777766555544433222221111111 1111112222223333332 221 1112222 233344445567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCccc--CCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEE
Q 001371 338 GEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKIL--DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTA 415 (1091)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~v 415 (1091)
..+...+..+.....+.+|+.++++.++|.+.......++ ++..|.|+|+||+|+|+++ .+++|+|+||+|+|||++
T Consensus 1187 ~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gekv 1265 (1495)
T PLN03232 1187 SGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKV 1265 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEE
Confidence 7788888889999999999999998776643211111111 2345789999999999632 357999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHH
Q 001371 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVA 495 (1091)
Q Consensus 416 aIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a 495 (1091)
|||||||||||||+++|+|+|+|++|+|.|||+|+++++++++|++|+||||||+||+|||||||.+++ +++|+++++|
T Consensus 1266 aIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~a 1344 (1495)
T PLN03232 1266 GVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEA 1344 (1495)
T ss_pred EEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 5899999999
Q ss_pred HHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEE
Q 001371 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTV 575 (1091)
Q Consensus 496 ~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I 575 (1091)
++.|+++++|+++|+|+||+|||+|.+|||||||||||||||+++|+||||||||||||++||+.|+++|++.++++|+|
T Consensus 1345 l~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI 1424 (1495)
T PLN03232 1345 LERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTML 1424 (1495)
T ss_pred HHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHHHHHhh
Q 001371 576 IVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1091)
Q Consensus 576 ~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~~~~ 624 (1091)
+||||++++++||+|+||++|+|+|.|+|+||++++++.|++|++.+..
T Consensus 1425 ~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1425 VIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 9999999999999999999999999999999998855699999976543
No 37
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.4e-81 Score=828.21 Aligned_cols=507 Identities=20% Similarity=0.279 Sum_probs=420.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 114 IGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFL 193 (1091)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i 193 (1091)
++..++.++..+.....+.+...++|.++|++++++|+.||++. ++|+++||+++|++.+++.+...+..++..++.++
T Consensus 1009 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~-~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i 1087 (1560)
T PTZ00243 1009 LLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTT-PLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSIC 1087 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCC-CccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455556667788999999999999999999986 99999999999999999999999988999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHH
Q 001371 194 GGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFL 273 (1091)
Q Consensus 194 ~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~ 273 (1091)
+.++++++.+|.+.++++.+..+++.+..++.+..++..+......+...+++.|+++|+++||+|++|+.+.+++.+..
T Consensus 1088 ~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~ 1167 (1560)
T PTZ00243 1088 SSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRL 1167 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHH
Confidence 88888888888554443333334444455566666666666677788899999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 274 VTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGK--LILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQ 351 (1091)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 351 (1091)
+...+..++......+......++..+..+++.+++.. +...+.+++|.+..++.+......++..+...+..+..+.
T Consensus 1168 d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~ 1247 (1560)
T PTZ00243 1168 DVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADM 1247 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777666554444444433444433333333333332 2334457888776666666777788888888889999999
Q ss_pred HHHHHHHHHhccCCCCCcCC-------------------------CC-Cc---ccCCCCCcEEEEeEEEECCCCCCCccc
Q 001371 352 AAAFKMFETINRKPEIDAYD-------------------------TK-GK---ILDDIRGDIELRDVYFSYPARPNEQIF 402 (1091)
Q Consensus 352 ~~~~r~~~~~~~~~~~~~~~-------------------------~~-~~---~~~~~~~~I~~~~vsf~Y~~~~~~~vL 402 (1091)
.+.+|+.++++..|+.+... .. .. +.++..|.|+|+||+|+|+++ .+++|
T Consensus 1248 ~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL 1326 (1560)
T PTZ00243 1248 NSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVL 1326 (1560)
T ss_pred HHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCcee
Confidence 99999999986433211000 00 00 011234789999999999753 35799
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhcc
Q 001371 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY 482 (1091)
Q Consensus 403 ~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~ 482 (1091)
+||||+|+|||++||||+||||||||+++|+|+|+|++|+|.|||+|++++++++||++|+||||||+||+|||||||..
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp 1406 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDP 1406 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC-CCEEEeeCCCCCCCHHhHHHH
Q 001371 483 GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD-PRILLLDEATSALDAESEKVV 561 (1091)
Q Consensus 483 g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~-~~IliLDE~tSaLD~~te~~i 561 (1091)
+. +++++++++|++.|+++++|.+||+||||.|||+|.+|||||||||||||||+++ |+||||||||||||++||+.|
T Consensus 1407 ~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~I 1485 (1560)
T PTZ00243 1407 FL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI 1485 (1560)
T ss_pred cc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHH
Confidence 64 6899999999999999999999999999999999999999999999999999995 899999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHHHHHh
Q 001371 562 QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1091)
Q Consensus 562 ~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~~~ 623 (1091)
++.|++.++++|+|+||||++++.+||+|+||++|+|+|.|+|+||+++++|.|+++++.+.
T Consensus 1486 q~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1486 QATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999866899999987653
No 38
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.4e-81 Score=760.29 Aligned_cols=524 Identities=24% Similarity=0.338 Sum_probs=459.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFG-DNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIR 139 (1091)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 139 (1091)
+++++++.++.+++.+..|+++++++|.+. .... ...+..+...+++++++..++.+++.+...+.+.++..++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGEP----LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777888889999999999763 2211 12233344445566677888899999999999999999999
Q ss_pred HHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001371 140 GLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAM 219 (1091)
Q Consensus 140 ~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~ 219 (1091)
..+|++++++|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+++++++.+|+.++
T Consensus 81 ~~l~~~l~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQGR-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHHhCCchhhccC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999887 9999999999999999999988888888888888888889999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 220 SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299 (1091)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1091)
+..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..+.......+..++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888999999999999999999999999999999999999888888877777766666555555555
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCC
Q 001371 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDD 379 (1091)
Q Consensus 300 ~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 379 (1091)
+..++++.++++.+..|.+|+|.+++++.+......|+..+...+..++.+..+.+|+.++++.+++..... .. ...
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~--~~-~~~ 316 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA--PV-TAA 316 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc--CC-CCC
Confidence 555555556667777999999999988877777778888888889999999999999999997543321111 11 111
Q ss_pred CCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHh
Q 001371 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1091)
Q Consensus 380 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr 459 (1091)
..+.|+|+||+|+||++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|
T Consensus 317 ~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred CCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 13579999999999853 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred hceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
++|+||||+|++|++||||||++|.|++++++++++++.++++++++++|+||||.+||+|.+|||||||||+||||+++
T Consensus 396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred hheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEE
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl 593 (1091)
+|+|+|||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999988899999999999999999999986
No 39
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-83 Score=689.69 Aligned_cols=490 Identities=31% Similarity=0.439 Sum_probs=430.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhH
Q 001371 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFL-GGFLIAFIKGW 204 (1091)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~ 204 (1091)
++..+++.....+--..|.|+.++++.|+-++ ++|.+..-+.....-|+..+...+...+-.++-+. .+++++..++|
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 44556677777788889999999999999887 88988777777776676666665555554444433 44455567899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1091)
Q Consensus 205 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1091)
+.+++.++++.++.++........-...++..++-.+.+....+++-+..++|.|+.|+.+..+|.+.+..+.+...+..
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 99999888888888777666666666666777777888999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001371 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1091)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~ 364 (1091)
...++.......+......+....+...+..|.+|.|+++..-.++++.+.|+..+......+.++..-.++.+++++.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 66666555555566666666677788889999999999999888888889999998888899999999999999999887
Q ss_pred CCCCcCCCCCcccC-CCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE
Q 001371 365 PEIDAYDTKGKILD-DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1091)
Q Consensus 365 ~~~~~~~~~~~~~~-~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I 443 (1091)
.+..+.. ..++.. ...+.|.|+||+|.|. +.+|+|+|+||++++|+++|||||||+||||++++|.|||++++|.|
T Consensus 244 ~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 244 AEVSDAP-DAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred hhhccCC-CCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 7765432 222333 3357899999999996 45799999999999999999999999999999999999999999999
Q ss_pred EECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCC
Q 001371 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1091)
Q Consensus 444 ~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~L 523 (1091)
.+||+|+++...+++|+.||.||||..|||+|+..||.||+|+++++|++.|++.+++++||+++|+||||.|||+|-.|
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglkl 400 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecC
Q 001371 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 524 SGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 603 (1091)
|||||||+||||+++++|+||+|||||||||++||+.||.+|++..+++|+++|||||||+-+||+|+||+||+|+|.|+
T Consensus 401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~ 480 (497)
T COG5265 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480 (497)
T ss_pred cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCchhHHHHH
Q 001371 604 HSKLVEDPEGAYSQLIR 620 (1091)
Q Consensus 604 ~~eL~~~~~~~y~~l~~ 620 (1091)
|+||+++ +|.|++||.
T Consensus 481 h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 481 HEELLAA-GGLYAEMWR 496 (497)
T ss_pred HHHHHHc-CChHHHHhc
Confidence 9999999 999999985
No 40
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.9e-82 Score=783.52 Aligned_cols=572 Identities=22% Similarity=0.312 Sum_probs=471.0
Q ss_pred ccCCchHHHHhhhcCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 001371 40 KTESVPFYKLFTFADS-ADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGI 118 (1091)
Q Consensus 40 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (1091)
..+...+.-+..|++. ..+...++.+++.+...++.....++++++.+.-...... . .....+..++.+++++..+
T Consensus 797 ~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~-~--~~~~~~~~vY~~l~~~~~~ 873 (1381)
T KOG0054|consen 797 ETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT-T--VSTSFYLGVYALLGVASSL 873 (1381)
T ss_pred hcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-C--CCcchHHHHHHHHHHHHHH
Confidence 3445566666666654 3333333334455555556666667777777642111100 0 0123355566777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 119 ASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLI 198 (1091)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 198 (1091)
+..++.+.+...+.+.+..++..++++++|.|+.|||.. ++|+|+||+++|++.+++.++..+..+++.++.+++.+++
T Consensus 874 ~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtT-P~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~v 952 (1381)
T KOG0054|consen 874 LTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTT-PTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVV 952 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCC-CccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999986 9999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHH
Q 001371 199 AFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYK 278 (1091)
Q Consensus 199 ~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 278 (1091)
+.+..|...++++.+..+++.+..++.+..+...+-....++...++++|+++|+-|||+|+.|+++.+++....+...+
T Consensus 953 i~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~ 1032 (1381)
T KOG0054|consen 953 ISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSR 1032 (1381)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHH
Confidence 99999988777777777777777777777777777777778899999999999999999999999999999888777665
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 279 SGVQ---EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAF 355 (1091)
Q Consensus 279 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 355 (1091)
..+- ..++.++..-+...+..++.++.. .+...+..++|.+-..+.+.+.....+.........+.....+.+
T Consensus 1033 ~~f~~~~a~RWla~Rle~ig~~~v~~~al~~----vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVE 1108 (1381)
T KOG0054|consen 1033 AFFLSISANRWLAVRLELLGNLVVLIAALFA----VLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVE 1108 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 4443 233344433333222222111111 112222266777777777888888888888888899999999999
Q ss_pred HHHHHhccCCCCCcCCCC--CcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 001371 356 KMFETINRKPEIDAYDTK--GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1091)
Q Consensus 356 r~~~~~~~~~~~~~~~~~--~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~ 433 (1091)
|+.++.+.++|.+...+. +++.++.+|+|+|+|++.+|..+ .++|||||||+|+|||+|||||++|||||||+++|.
T Consensus 1109 Rv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF 1187 (1381)
T KOG0054|consen 1109 RVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF 1187 (1381)
T ss_pred HHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH
Confidence 999999977662221111 23335667999999999999643 478999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcc
Q 001371 434 RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID 513 (1091)
Q Consensus 434 g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~ 513 (1091)
|+.+|.+|+|.|||+||.++++++||++++++||||.||+||+|.|+.... +++|+++|+|++.|+|.++|+++|+|+|
T Consensus 1188 Rl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld 1266 (1381)
T KOG0054|consen 1188 RLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKDVVSSLPGGLD 1266 (1381)
T ss_pred HhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHHHHhhCCcCCC
Confidence 999999999999999999999999999999999999999999999999654 5899999999999999999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEE
Q 001371 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1091)
Q Consensus 514 T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl 593 (1091)
++|.|+|.|+|-||||.+||||||+|+++||+|||||+++|++|+..||+.|++.++++|||.||||++|+.+||||+||
T Consensus 1267 ~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVl 1346 (1381)
T KOG0054|consen 1267 SEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVL 1346 (1381)
T ss_pred ceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEeeecChhHHhcCCCchhHHHHHH
Q 001371 594 HRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1091)
Q Consensus 594 ~~G~Ive~Gt~~eL~~~~~~~y~~l~~~ 621 (1091)
|+|+|+|.|+|++|++++++.|++++..
T Consensus 1347 d~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1347 DAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred eCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 9999999999999999878888765543
No 41
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.5e-79 Score=745.10 Aligned_cols=534 Identities=22% Similarity=0.292 Sum_probs=460.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRG 140 (1091)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 140 (1091)
+++.+++.++..++....|++++.++|.+....+. ..+..+.+.++++.++..++.+++.++..+.+.++..++|.
T Consensus 8 ~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 83 (544)
T TIGR01842 8 FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSV----PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQ 83 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666677778888999999976432221 22233334444555667788888899999999999999999
Q ss_pred HHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001371 141 LYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE-KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAM 219 (1091)
Q Consensus 141 ~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~ 219 (1091)
++|+|++++|+. ..+...+++++|++.+++.+.. ....++..++.++ .+++++.++|.+++++++.+|++++
T Consensus 84 ~~~~~ll~~~~~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 84 PIFAASFSATLR------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHHHHhcCccc------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999983 2356788999999999998876 4445555544444 4467889999999998888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 220 SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299 (1091)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1091)
+..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+.....+....+..++..
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888999999999999999999999999999999999999998888888777777777776666666
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCC
Q 001371 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDD 379 (1091)
Q Consensus 300 ~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 379 (1091)
+..++++++|++++..|.+|+|.+++++.+......|+..+......++.+..+.+|+.++++.+++.+.. ...+.
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~ 312 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCC
Confidence 67777888999999999999999999888888788899999999999999999999999999765543211 11122
Q ss_pred CCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHh
Q 001371 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1091)
Q Consensus 380 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr 459 (1091)
..+.|+++||+|+|++. ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|
T Consensus 313 ~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 34579999999999743 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred hceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
++++||||+|++|++|+||||+++.+++++++++++++.+++++++++||+|+||.+||+|.+|||||||||+||||+++
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred hheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
+|+|||||||||+||+++++.+.+.|++.. +++|+|+||||+++++.||+|++|++|+++|.|+|+||+++
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999999875 68999999999999999999999999999999999999753
No 42
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.3e-77 Score=790.80 Aligned_cols=504 Identities=19% Similarity=0.267 Sum_probs=413.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001371 112 LGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMAT 191 (1091)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~ 191 (1091)
++++..++.+++.+++.+.+.+...++|.++++++++.|+.||++. ++|+++||+++|++.+++.+...+..++..++.
T Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~ 1012 (1490)
T TIGR01271 934 TADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTM-KAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLI 1012 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456667777788888999999999999999999999999886 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHH
Q 001371 192 FLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKK 271 (1091)
Q Consensus 192 ~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 271 (1091)
+++.++++++++|.++++++.++.+++++..++.+..++..+......+...+++.|+++|+.+||+|++|+.+.+++.+
T Consensus 1013 ~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~ 1092 (1490)
T TIGR01271 1013 VLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHK 1092 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHH
Confidence 99999888888887665544444444444555555566666666777788999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 272 FLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY--ALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGA 349 (1091)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (1091)
..+...+..+.......+......++..+.. +++++++.. ....|.+..++.+.+....++..+...+..+..
T Consensus 1093 ~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~ 1167 (1490)
T TIGR01271 1093 ALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDG 1167 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776544333322222222111111111111 112222222 234444444444455555667777777788888
Q ss_pred HHHHHHHHHHHhccCCCCCcCCCC--------------Cc--ccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCC
Q 001371 350 GQAAAFKMFETINRKPEIDAYDTK--------------GK--ILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGT 413 (1091)
Q Consensus 350 ~~~~~~r~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~ 413 (1091)
...+.+|+.++++.++|.+..... .. ..++..|.|+|+||+|+|++. .+++|+|+||+|+|||
T Consensus 1168 ~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Ge 1246 (1490)
T TIGR01271 1168 LMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQ 1246 (1490)
T ss_pred HHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCC
Confidence 999999999999776653211100 00 112345789999999999753 4689999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHH
Q 001371 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~ 493 (1091)
++||||+||||||||+++|+|+|+ .+|+|.|||+|+++++++++|++|+||||||+||+|||||||.... +++|++++
T Consensus 1247 kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~ 1324 (1490)
T TIGR01271 1247 RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIW 1324 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHH
Confidence 999999999999999999999997 7999999999999999999999999999999999999999998764 58999999
Q ss_pred HHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCe
Q 001371 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRT 573 (1091)
Q Consensus 494 ~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T 573 (1091)
+|++.|+++++|.++|+|+||+|||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.++++|
T Consensus 1325 ~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~T 1404 (1490)
T TIGR01271 1325 KVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCT 1404 (1490)
T ss_pred HHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHHHHHhhc
Q 001371 574 TVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEAN 625 (1091)
Q Consensus 574 ~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~~~~~ 625 (1091)
+|+||||++++.+||+|+||++|+|+|.|+|+||+++ ++.|++|++.+...
T Consensus 1405 vI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1405 VILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADRL 1455 (1490)
T ss_pred EEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhChh
Confidence 9999999999999999999999999999999999986 89999999866543
No 43
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.5e-75 Score=706.58 Aligned_cols=534 Identities=17% Similarity=0.141 Sum_probs=439.9
Q ss_pred hHHHHhhhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 45 PFYKLFTFAD-SADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1091)
Q Consensus 45 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1091)
.+++++++++ ++++ .++++++++++.+++....|++++.+++..... . . .. ...++++.++..++.++.
T Consensus 4 ~~~~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~--~-~--~~----~~~~~~~~~~~~~~~~~~ 73 (555)
T TIGR01194 4 AIGEILALLRSPFPA-ITAFSIALGLAGGLAIIALLASINNAIHEENFL--G-Q--GS----LFSFGGLCLLALLFRIGA 73 (555)
T ss_pred hHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--c-c--hH----HHHHHHHHHHHHHHHHHH
Confidence 4677778777 6544 456667777777777788888888887642110 0 0 01 112333445566788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001371 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1091)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 203 (1091)
.++.+..+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++.. +..++..++.+++.++++++++
T Consensus 74 ~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 151 (555)
T TIGR01194 74 DIFPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLS 151 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999987 9999999999999999998864 6677777888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHH--HHHHHHHHHHHHHHHHHH
Q 001371 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEK--QAMSNYKKFLVTAYKSGV 281 (1091)
Q Consensus 204 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~~~~~~~~ 281 (1091)
|.+++++++.+|+.+++..++.++.++...+.++..++..+.+.|.+.|++++|+|+.++ ...+++.+..++..+...
T Consensus 152 ~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
T TIGR01194 152 VPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHI 231 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999988888888888888888888889999999999999999999999954 556788887777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001371 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361 (1091)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 361 (1091)
+..........+..++..+...+++++|+.. +.+++|++++++.+......|+..+...+..++.+..+.+|+.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll 308 (555)
T TIGR01194 232 IEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFG 308 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444444433444444444444555433 6899999999988888888899999999999999999999999997
Q ss_pred ccCCC--CC-c-CCCCCc---ccCCCCCcEEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHH
Q 001371 362 NRKPE--ID-A-YDTKGK---ILDDIRGDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI 432 (1091)
Q Consensus 362 ~~~~~--~~-~-~~~~~~---~~~~~~~~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll 432 (1091)
+.+++ .. + .+.... .+....+.|+++||+|+|++.+ ++++|+|+||++++||++|||||||||||||+++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll 388 (555)
T TIGR01194 309 ERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLF 388 (555)
T ss_pred hhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 53211 11 0 000000 1112235799999999997532 24699999999999999999999999999999999
Q ss_pred hccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCc
Q 001371 433 ERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512 (1091)
Q Consensus 433 ~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~ 512 (1091)
+|+|+|++|+|.+||+|+++++.+++|++++||+|||+||++|+++|+ .+++++++++++++.++++++++++|+||
T Consensus 389 ~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 389 CGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred hCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhccccccc
Confidence 999999999999999999999999999999999999999999999995 46788999999999999999999999999
Q ss_pred ccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHH-H-cCCCeEEEEccCchhhhccCeE
Q 001371 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR-I-MVNRTTVIVAHRLSTVRNADMI 590 (1091)
Q Consensus 513 ~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~-~-~~~~T~I~ItHrls~i~~aD~I 590 (1091)
||. .+|||||||||+||||++++|||||||||||+||+++|+.+.+.+.+ . .+++|+|+||||+++++.||+|
T Consensus 466 ~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i 540 (555)
T TIGR01194 466 STT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQI 540 (555)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEE
Confidence 995 78999999999999999999999999999999999999999887743 3 4689999999999999999999
Q ss_pred EEEeCCEEeee
Q 001371 591 AVIHRGKIVEK 601 (1091)
Q Consensus 591 ivl~~G~Ive~ 601 (1091)
++|++|+|+|.
T Consensus 541 ~~l~~G~i~~~ 551 (555)
T TIGR01194 541 IKLAAGCIVKD 551 (555)
T ss_pred EEEECCEEEEe
Confidence 99999999874
No 44
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=7.4e-72 Score=613.51 Aligned_cols=533 Identities=21% Similarity=0.290 Sum_probs=453.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 63 IGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLY 142 (1091)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 142 (1091)
.+.+..++ .+.....|.++-.+-|.+....+. ..+....++.+++.++..++.+++.....+++.++...+...+
T Consensus 28 v~lfS~~I-NiL~L~~~lyMLQVyDRVL~S~s~----~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v 102 (580)
T COG4618 28 VGLFSAVI-NLLALTGPLYMLQVYDRVLPSRSV----PTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPV 102 (580)
T ss_pred HHHHHHHH-HHHHHhhhHHHHHHHhhhccCCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 33333333 344555666777778887654332 2233344445566677888999999999999999999999999
Q ss_pred HHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001371 143 LKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222 (1091)
Q Consensus 143 ~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~ 222 (1091)
|...++.+..-- ..|+=..-+ +|.++++.|++..-...+.+.-.+-..+.++|.+++++.++.++...+++.+.+
T Consensus 103 ~~a~~~~~l~~~----~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ 177 (580)
T COG4618 103 FAASFSAPLLRR----GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLAL 177 (580)
T ss_pred HHHHHhhHHhhc----CCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987776532 344333333 599999999987444434343344455667778888888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302 (1091)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1091)
+-....++-.++..+...+++....-+.+|.++|++.|......++|.+....+.....+..-..+.+..+...+-.+..
T Consensus 178 ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQ 257 (580)
T COG4618 178 LNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQ 257 (580)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 77777888888888888999999999999999999999999999999999998888888877777888888888888888
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCCC
Q 001371 303 ALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRG 382 (1091)
Q Consensus 303 ~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1091)
..++..|++|+.+|++|+|.+++.-..+-....|+-..+..+-.+..++.+..|+.+.+...|+... .-+.+..++
T Consensus 258 s~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g 333 (580)
T COG4618 258 SAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQG 333 (580)
T ss_pred HHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCc
Confidence 9999999999999999999998865555555678889999999999999999999999987765332 223344568
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.+.++++++.=|+. ++|+|+|+||++++|+-+|||||||||||||.++|.|.++|.+|.|.+||-|++..+.+.+=++|
T Consensus 334 ~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 334 ALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred eeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 89999999987754 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC
Q 001371 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1091)
Q Consensus 463 a~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~ 542 (1091)
||.|||..||+|||+|||.=..++.|+|.+.+|++.|+.||.|.+||+||||.|||.|..|||||||||+||||+|.||.
T Consensus 413 GYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~ 492 (580)
T COG4618 413 GYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPF 492 (580)
T ss_pred CcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCc
Confidence 99999999999999999987777899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 543 IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
+++||||-|+||.+.|..+.++|...+ +|.|+|+||||.+.+..+|+|+||+||++...|+-+|.+++
T Consensus 493 lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 493 LVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred EEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999998764 68999999999999999999999999999999999999875
No 45
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=8.5e-70 Score=659.65 Aligned_cols=526 Identities=18% Similarity=0.172 Sum_probs=403.3
Q ss_pred hhcChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 51 TFADSADTALMIIGSIGAIGNGLCLPL-MTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMI 129 (1091)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (1091)
+|++++++. +++++++.++..++... .|++.+.++|.... +. ..+.. ++++.++..++.++..++..+
T Consensus 6 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~--~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~ 74 (547)
T PRK10522 6 LVWRQYRWP-FISVMALSLASAALGIGLIAFINQRLIETADT--SL----LVLPE----FLGLLLLLMAVTLGSQLALTT 74 (547)
T ss_pred HHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cc----hHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 34455555555555544 45666778885421 11 11111 111222234566778888888
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001371 130 TGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLV 209 (1091)
Q Consensus 130 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~ 209 (1091)
.+.++..++|.++|++++++|+++|++. ++|++++|+++|++.+...+. .+..++..++.+++.++++++++|.++++
T Consensus 75 ~~~~~~~~lR~~l~~~ll~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li 152 (547)
T PRK10522 75 LGHHFVYRLRSEFIKRILDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLV 152 (547)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999987 999999999999999998765 46677888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 210 MLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGE---KQAMSNYKKFLVTAYKSGVQEGLA 286 (1091)
Q Consensus 210 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~ 286 (1091)
+++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++++..++..+...+....
T Consensus 153 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (547)
T PRK10522 153 TAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTF 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Confidence 999999998888889999888888889999999999999999999996 4443 456778877777776665555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 001371 287 AGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPE 366 (1091)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 366 (1091)
......+..++......+++++++.+. .+ +.+.+..+..+.+....|+..+...+..++.+..+.+|+.++++.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~ 308 (547)
T PRK10522 232 HLSAVNWSNIMMLGAIGLVFYMANSLG-WA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYK 308 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 443333322222222222333333221 12 222222222223334568888888889999999999999998754432
Q ss_pred CCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEEC
Q 001371 367 IDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1091)
Q Consensus 367 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~id 446 (1091)
.+..+ .... +..+.|+++||+|+||+ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+|
T Consensus 309 ~~~~~--~~~~-~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 383 (547)
T PRK10522 309 AEFPR--PQAF-PDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD 383 (547)
T ss_pred ccccc--cccc-CcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 21111 1111 11357999999999974 3479999999999999999999999999999999999999999999999
Q ss_pred CccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChH
Q 001371 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1091)
Q Consensus 447 g~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 526 (1091)
|+|+++++.+++|++|+||+|||++|++|++|| + ++.++++++++++.+++.+++. +|+|. .+|.+||||
T Consensus 384 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LSgG 453 (547)
T PRK10522 384 GKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLSKG 453 (547)
T ss_pred CEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCCHH
Confidence 999999999999999999999999999999999 3 4578888888888888777665 34442 258999999
Q ss_pred HHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhccCeEEEEeCCEEeee-cC
Q 001371 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK-GT 603 (1091)
Q Consensus 527 QkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~-Gt 603 (1091)
|||||+||||++++|+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|. |+
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~ 533 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGE 533 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCC
Confidence 9999999999999999999999999999999999999997654 48999999999999999999999999999986 55
Q ss_pred hhHHh
Q 001371 604 HSKLV 608 (1091)
Q Consensus 604 ~~eL~ 608 (1091)
+.+-.
T Consensus 534 ~~~~~ 538 (547)
T PRK10522 534 ERDAA 538 (547)
T ss_pred chhhh
Confidence 55433
No 46
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=5.2e-66 Score=633.94 Aligned_cols=530 Identities=14% Similarity=0.116 Sum_probs=438.0
Q ss_pred HHHHhhhcChhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 46 FYKLFTFADSADT----ALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1091)
Q Consensus 46 ~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1091)
++++++|++|+++ ..+++.+++.++..++....|++.+.++|.+... +...+...+..+++.++++.++..+..|
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~-~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR-SPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667888877654 2456677777778888899999999999987533 2222222233333344455556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1091)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 201 (1091)
+..++...+..++..++|.+++++....+..+||+ ++|++.+|+++|++.+.+.+...+..++.+++.+++..+.++.
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888889999999999988888999974 6899999999999999999999999999999999988887775
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 001371 202 -KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSG 280 (1091)
Q Consensus 202 -~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 280 (1091)
++|.+++++++.+|+.+++.+++.+++.+..++.++..++..+...|.++|+++||+|+.|+.+.+++.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----cCCCHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHH
Q 001371 281 VQEGLAAGIGLGMVMLIVFC--SYALSVWYGGKLIL-E----EGYNGGQVVN-VMVA---VLTGSMSLGEASPCLSAFGA 349 (1091)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~-~----~~~t~g~l~~-~~~~---~~~~~~~l~~~~~~~~~~~~ 349 (1091)
.+.....+....+..++... ..+++++.|..... . |.+|.|.+++ ++.+ +.....|+..+......++.
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777776666542 22233333443332 2 6789888776 3333 33446788888889999999
Q ss_pred HHHHHHHHHHHhccCCCCCcC-------CC-CC--------------cccCCCCCcEEEEeEEEECCCCCCCccccceeE
Q 001371 350 GQAAAFKMFETINRKPEIDAY-------DT-KG--------------KILDDIRGDIELRDVYFSYPARPNEQIFSGFSI 407 (1091)
Q Consensus 350 ~~~~~~r~~~~~~~~~~~~~~-------~~-~~--------------~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl 407 (1091)
...+.+|+.++++.+++.+.. +. .+ .......+.|+++||+|+|++ ++++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceE
Confidence 999999999999754332100 00 00 001112356999999999974 3479999999
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCC---
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--- 484 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~--- 484 (1091)
+|++||+++|+||+|||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999875 66899999999999999999999874
Q ss_pred ----CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHH
Q 001371 485 ----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560 (1091)
Q Consensus 485 ----~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~ 560 (1091)
++.++++++++++.+++++++++ |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 34678899999999999999988 999999987 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeC
Q 001371 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1091)
Q Consensus 561 i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 595 (1091)
+.+.+++. ++|+|+||||++.++.||+|++|++
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999873 8999999999999999999999973
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8.4e-53 Score=461.27 Aligned_cols=237 Identities=28% Similarity=0.505 Sum_probs=222.4
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
|.|+|+|++|+|++. ..++|+|+||+|++||+++|+||+|||||||+++|.|+++ .+|+|.+||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 468999999999742 4579999999999999999999999999999999999998 79999999999999999999999
Q ss_pred eeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC
Q 001371 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~ 541 (1091)
|+||||+|++|++|++||+.+..+ .++++++++++.+++.+++.++|+|++|.++|+|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999974333 5788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHHHH
Q 001371 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1091)
Q Consensus 542 ~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~ 621 (1091)
+|+||||||++||+.+++.+++.|++..+++|+|+||||++++..||+|++|++|+|++.|++++|+++ .+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999988788999999999999999999999999999999999999986 6788888754
Q ss_pred H
Q 001371 622 Q 622 (1091)
Q Consensus 622 ~ 622 (1091)
.
T Consensus 237 ~ 237 (275)
T cd03289 237 S 237 (275)
T ss_pred c
Confidence 3
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-50 Score=398.80 Aligned_cols=216 Identities=32% Similarity=0.566 Sum_probs=191.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcccc-CCChHHHhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK-EFQLQWIRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~-~~~~~~lr~~ 461 (1091)
-|+++|++.+|. +..||+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++. +.+...+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 389999999996 357999999999999999999999999999999999999999999999998763 3488999999
Q ss_pred eeEEeccCcccc-ccHHHHhccCCC---CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 462 IGLVSQEPVLFT-GSIKDNIAYGKD---DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 462 ia~V~Q~~~Lf~-~TIreNI~~g~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
+|+|+|+..||. -|+.|||.++-- ..+ ++.-.+.++.++|.+--+..| .+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 999999999996 699999998721 112 223345677888888777777 4799999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcCC
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~ 611 (1091)
||||.-+|+|+++|||||||||+.-..+.+.++++. .|.|.|+|||.+.+.++ ||||+.||+|+|+|+|+++++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999998875 57899999999999987 9999999999999999999998764
Q ss_pred C
Q 001371 612 E 612 (1091)
Q Consensus 612 ~ 612 (1091)
.
T Consensus 228 ~ 228 (240)
T COG1126 228 K 228 (240)
T ss_pred C
Confidence 3
No 49
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-48 Score=445.75 Aligned_cols=377 Identities=25% Similarity=0.393 Sum_probs=335.6
Q ss_pred hHHhHhhhCCChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1091)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~ 785 (1091)
..+++..+..+.|+++..++++.++......+.-...+..++....... ..........+..++.+++.++.++|.+++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~-~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD-SADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666778888888888887777666555555666666666554111 112222335566677788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001371 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1091)
Q Consensus 786 ~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l 865 (1091)
.+++++...+||..+|++++||+++||| .|.+|.|++|+|.|+..+.+.++..+.+.+.++++.+++++.++..+|.|
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 9999999999999999999999999999 67799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHH
Q 001371 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1091)
Q Consensus 866 ~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~ 945 (1091)
+++.+..+|++.+...++.++++..++..+.....++..+.|.+.+++|||+|++|++-.++|.+.++...+.+.|....
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCC
Q 001371 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1091)
Q Consensus 946 ~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~ 1025 (1091)
.+.+++.+...........+|||++++..|.++.+++....++....+.++.....+.+++.++..|+++++++++++|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999888888888888888888999999999999999999999998
Q ss_pred CCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCcccc
Q 001371 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQL 1087 (1091)
Q Consensus 1026 ~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~ 1087 (1091)
+++. .... |...+|.|+|+||+|+||+||+.|||||+||+|+|||+|||||||||||||+
T Consensus 451 i~~~-G~~~-p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTi 510 (716)
T KOG0058|consen 451 IPLT-GTLA-PDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTI 510 (716)
T ss_pred CCCC-Cccc-cccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHH
Confidence 8776 3222 2257999999999999999999999999999999999999999999999986
No 50
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-49 Score=446.26 Aligned_cols=223 Identities=30% Similarity=0.483 Sum_probs=199.1
Q ss_pred CCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCcEEEECCcccc--C
Q 001371 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLK--E 452 (1091)
Q Consensus 380 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-----~~~G~I~idg~~i~--~ 452 (1091)
..+.|+|+|++|+|++. .+++|+|+||+|++||++||+||+|||||||+++|+|+++ |++|+|.+||+++. +
T Consensus 77 ~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34679999999999642 3579999999999999999999999999999999999997 57999999999997 4
Q ss_pred CChHHHhhceeEEeccCccccccHHHHhccCCC--CCCHHH-----HHHHHHHcccHHHHhhCCCCcccccccCCCCCCh
Q 001371 453 FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTEE-----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1091)
Q Consensus 453 ~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~--~~~~~~-----i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSG 525 (1091)
++...+|+.++||||+||+|++||+|||.|+.. ..++++ +.++++.+++. ++.++.++++|.+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW-------DEVKDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccCCH
Confidence 566788999999999999999999999998742 133333 45667777654 3456889999999999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecCh
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 604 (1091)
|||||++||||++++|+|||||||||+||+++.+.++++|+++.+++|+|+|||++.++.. ||+|+||++|+|+|.|++
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998889999999999999987 999999999999999999
Q ss_pred hHHhcC
Q 001371 605 SKLVED 610 (1091)
Q Consensus 605 ~eL~~~ 610 (1091)
+++...
T Consensus 309 ~~l~~~ 314 (329)
T PRK14257 309 KTIFIH 314 (329)
T ss_pred HHHhcC
Confidence 999865
No 51
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-49 Score=388.83 Aligned_cols=220 Identities=35% Similarity=0.539 Sum_probs=199.6
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-----cEEEECCccccC--CC
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-----GEVLIDGINLKE--FQ 454 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~-----G~I~idg~~i~~--~~ 454 (1091)
..++++|+++.|. ++.+|+|||++|++++.+|++|||||||||+++.+.|+.+..+ |+|.++|+||.+ ++
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3589999999996 4579999999999999999999999999999999999999876 999999999976 57
Q ss_pred hHHHhhceeEEeccCccccccHHHHhccCCC------CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 455 ~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
.-.+|++||+|+|.|.-|..||+||+.||-. ..-+|.++++++.|+|+|.+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 8999999999999999999999999999931 1224668899999999998863 24567788999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||+||||||.-+|+|||||||||||||.+..+|.+.|.++.++-|+|+|||.++-. +-+|+...+-+|+++|.|+-+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 99999999999999999999999999999999999999999899999999999875 45999999999999999999998
Q ss_pred hcCC
Q 001371 608 VEDP 611 (1091)
Q Consensus 608 ~~~~ 611 (1091)
..++
T Consensus 236 F~~P 239 (253)
T COG1117 236 FTNP 239 (253)
T ss_pred hcCc
Confidence 8763
No 52
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-48 Score=405.00 Aligned_cols=217 Identities=36% Similarity=0.599 Sum_probs=191.6
Q ss_pred EEEEeEEEECCCC--CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh---HHH
Q 001371 384 IELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWI 458 (1091)
Q Consensus 384 I~~~~vsf~Y~~~--~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~---~~l 458 (1091)
|+++||++.|+.. ....+|+||||+|++||..+|||+||+|||||++++.++-.|++|+|.+||.|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 12468999999999999999999999999999999999999999999999988887775 456
Q ss_pred hhceeEEeccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 459 r~~ia~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
|++||+++|++.|++ .||.+||.|.-+ ..+ ++++.+.++.++|.|.-.+-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 689999999999998 799999998742 122 345667778888877766655 68999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHh
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
+|||||..+|+|||.|||||||||+|-+.|.+.|++.- -|-|+++|||.++.++. |||+.||++|+|+|+|+-.|+.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999988887643 47899999999999987 9999999999999999999998
Q ss_pred cCC
Q 001371 609 EDP 611 (1091)
Q Consensus 609 ~~~ 611 (1091)
.++
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 875
No 53
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.5e-47 Score=414.09 Aligned_cols=235 Identities=49% Similarity=0.806 Sum_probs=218.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++. .+++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 357999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCE
Q 001371 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1091)
Q Consensus 464 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~I 543 (1091)
|++|++++|+.|++|||.++.+..+.+++.++++..++.+.++.+|.|+++.....+.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999987655566777888888999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHHH
Q 001371 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1091)
Q Consensus 544 liLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~ 620 (1091)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|++++++++ .+.|..+++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 9999999999999999999999988778999999999999988999999999999999999999887 777877654
No 54
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-48 Score=391.92 Aligned_cols=217 Identities=35% Similarity=0.592 Sum_probs=195.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+|+|||++|. ++.+++|+||+|++||+++++|||||||||++++|.|+++|++|+|++||.++++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999996 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcccc-ccHHHHhccCCCC---CC----HHHHHHHHHHcccH--HHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 464 LVSQEPVLFT-GSIKDNIAYGKDD---AT----TEEIRVATELANAA--KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 464 ~V~Q~~~Lf~-~TIreNI~~g~~~---~~----~~~i~~a~~~a~l~--~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
||-|+.-||. -||.|||.+- |. .+ ++++.+.++..+|+ +|..+.| ..|||||+||+.+
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 9999999996 7999999853 21 22 45677788888886 4777777 4799999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchh-hhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLST-VRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~-i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||||..+|+|+++|||+|||||.+.+.+|+-+.++- -++|+|+|||.+.. ++-||||.||++|+|+..|+++|++++
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999999887653 37999999999975 678999999999999999999999987
Q ss_pred CCchh
Q 001371 611 PEGAY 615 (1091)
Q Consensus 611 ~~~~y 615 (1091)
+...|
T Consensus 227 Pan~F 231 (309)
T COG1125 227 PANDF 231 (309)
T ss_pred ccHHH
Confidence 54433
No 55
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.2e-47 Score=414.07 Aligned_cols=240 Identities=32% Similarity=0.592 Sum_probs=221.7
Q ss_pred CCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHh
Q 001371 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1091)
Q Consensus 380 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr 459 (1091)
..+.|+++|++++|++. +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 45789999999999742 35799999999999999999999999999999999999999999999999999999988999
Q ss_pred hceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
+.++||+|+|++|++|++||+.+... ..+++++++++.+++.+.+..+|.|++|.+++.+.+||||||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999986532 35667888899999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHH
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~ 619 (1091)
+|++|||||||++||+++++.+.+.++++.+++|+|++||+++.+..||+|++|++|+|++.|+++++.+..++.|++++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999999887778999999999999999999999999999999999999887567777776
Q ss_pred HH
Q 001371 620 RL 621 (1091)
Q Consensus 620 ~~ 621 (1091)
..
T Consensus 254 ~~ 255 (257)
T cd03288 254 RT 255 (257)
T ss_pred hc
Confidence 43
No 56
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-46 Score=402.96 Aligned_cols=233 Identities=49% Similarity=0.802 Sum_probs=216.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ +.++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999963 246999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCE
Q 001371 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1091)
Q Consensus 464 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~I 543 (1091)
|++|++++|++|++||+.++.++.+++++.++++.+++.+.+..+|.|++|.+..+..+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998766677778888999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHH
Q 001371 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1091)
Q Consensus 544 liLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~ 619 (1091)
+||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++... ...|+.++
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~ 233 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMW 233 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHH
Confidence 9999999999999999999999887778899999999999999999999999999999999998875 55555544
No 57
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-46 Score=400.79 Aligned_cols=226 Identities=50% Similarity=0.851 Sum_probs=212.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ .+++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5899999999963 24699999999999999999999999999999999999999999999999999988888899999
Q ss_pred eEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC
Q 001371 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1091)
Q Consensus 463 a~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~ 542 (1091)
+|++|++++|++|++||+.++.+...++++.++++.+++.++++.+|.|+++.++....+||||||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998876666778888899999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 543 IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999988778999999999999999999999999999999999888754
No 58
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-46 Score=401.92 Aligned_cols=232 Identities=55% Similarity=0.908 Sum_probs=215.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++. +.++|+|+||++++|++++|+||+|||||||+++|.|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999643 247999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCE
Q 001371 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1091)
Q Consensus 464 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~I 543 (1091)
|++|++.+|+.|++||+.++.++.+.+++.+.++.+++.++++.+|.|+++.++....+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998765667778888899999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHH
Q 001371 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1091)
Q Consensus 544 liLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~ 617 (1091)
+||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++... .+.|+.
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~ 232 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAK 232 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhh
Confidence 9999999999999999999999988888999999999999999999999999999999999999876 454443
No 59
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-43 Score=371.92 Aligned_cols=469 Identities=19% Similarity=0.224 Sum_probs=351.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001371 110 VYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLM 189 (1091)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~ 189 (1091)
.++.++..+.+.+........++++..++|.++.++++..|+.-+++- +++.++.++++|+..|. +-...++.+.+..
T Consensus 55 ~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~-~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~ 132 (546)
T COG4615 55 LGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERL-GSARLLAGLTSDVRNIS-FAFSRLPELVQAI 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh-cccchhhhhccccccee-ehHhhhHHHHHHH
Confidence 333334445555566667778999999999999999999999999886 99999999999999998 4445677788999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHH--HH
Q 001371 190 ATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQA--MS 267 (1091)
Q Consensus 190 ~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~--~~ 267 (1091)
..++++...+.++++.+.++.++.+.+.++...+...+..+.....++..++..+..+..+.|-|.++...--.+. .+
T Consensus 133 il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~ 212 (546)
T COG4615 133 ILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNN 212 (546)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhh
Confidence 9999999999999999999998888888888888888888999999999999999999999999999876533222 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 001371 268 NYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVN-VMVAVLTGSMSLGEASPCLSA 346 (1091)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~-~~~~~~~~~~~l~~~~~~~~~ 346 (1091)
.|...-+...+..............+.+++.+....+.+|+... -.....+... +....+++..|+.++...++.
T Consensus 213 ~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~----~~w~st~~a~tivlvlLflr~pL~s~vgilP~ 288 (546)
T COG4615 213 LYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALS----LGWASTNVAATIVLVLLFLRTPLLSAVGILPT 288 (546)
T ss_pred hcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hccchhhHHHHHHHHHHHHhhHHHHHHhhhhH
Confidence 22222222222111111111111222233333333333343322 1121112222 222334445688888888888
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHH
Q 001371 347 FGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKS 426 (1091)
Q Consensus 347 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKS 426 (1091)
+..+.++..++.++-..++. .+.. ..++.++. ..|+++||.|+|+.. ..-+.-||++|++||.|-|+|.+|||||
T Consensus 289 l~~AqvA~~kiakle~~~~~-a~~~-~~q~~p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKS 363 (546)
T COG4615 289 LLTAQVAFNKIAKLELAPYK-ADFP-RPQAFPDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKS 363 (546)
T ss_pred HHHHHHHHHHHHHhhcCCcc-ccCC-CCCcCCcc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHH
Confidence 88999999988876553332 2211 12222222 369999999999743 3678899999999999999999999999
Q ss_pred HHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCC-CCHHHHHHHHHHcccHHHH
Q 001371 427 TVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFI 505 (1091)
Q Consensus 427 TLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~-~~~~~i~~a~~~a~l~~~i 505 (1091)
|++++|.|+|.|++|+|++||.+++.-+++++|+-++-|.-|-|||..++ |.+. ++++.+..-++.-.+..-.
T Consensus 364 T~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt 437 (546)
T COG4615 364 TLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT 437 (546)
T ss_pred HHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999765 4443 6777766665554444422
Q ss_pred hhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchh
Q 001371 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLST 583 (1091)
Q Consensus 506 ~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~ 583 (1091)
++.+|--+. ..||-|||.|+|+--|++-+.||++|||=-+-=||+=.+.+-+.+...+ +|||+|.|||+-.+
T Consensus 438 -sl~d~~fs~-----~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y 511 (546)
T COG4615 438 -SLNDGRFSN-----LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY 511 (546)
T ss_pred -cccCCcccc-----cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchh
Confidence 333443332 4699999999999999999999999999999999998888876664433 69999999999999
Q ss_pred hhccCeEEEEeCCEEeee
Q 001371 584 VRNADMIAVIHRGKIVEK 601 (1091)
Q Consensus 584 i~~aD~Iivl~~G~Ive~ 601 (1091)
...|||++.|++|+++|.
T Consensus 512 F~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 512 FIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhhHHHHHHHhcCceeec
Confidence 999999999999999974
No 60
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.4e-45 Score=396.01 Aligned_cols=220 Identities=35% Similarity=0.653 Sum_probs=207.4
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
+.|+++|++++|+.. ++++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999742 3579999999999999999999999999999999999999999999999999999898899999
Q ss_pred eeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC
Q 001371 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~ 541 (1091)
++|++|++.+|++|++|||.+..+ .+++++.++++..++.+++.++|.|++|.+++.+.+||||||||++||||++++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987654 5678889999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecC
Q 001371 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 542 ~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 603 (1091)
+++||||||++||+.+.+.+.+.|+++.+++|+|++||++..+..||+|++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877899999999999999999999999999998876
No 61
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.6e-45 Score=400.29 Aligned_cols=234 Identities=63% Similarity=1.045 Sum_probs=214.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++..+.++|+|+||++++||.++|+||+|||||||+++|+|+++|++|+|.++|.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533357999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCE
Q 001371 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1091)
Q Consensus 464 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~I 543 (1091)
|++|++.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++.+.....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998665566777788888899999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHH
Q 001371 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618 (1091)
Q Consensus 544 liLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l 618 (1091)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++... ...++.+
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 234 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKL 234 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHH
Confidence 9999999999999999999999887778999999999999999999999999999999999998765 4444433
No 62
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=9.5e-45 Score=389.37 Aligned_cols=219 Identities=42% Similarity=0.738 Sum_probs=203.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
+|+++|++++|++. ..++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|.++..++...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999642 25799999999999999999999999999999999999999999999999999888877788899
Q ss_pred eEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC
Q 001371 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1091)
Q Consensus 463 a~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~ 542 (1091)
+|++|++++|..|++||+.++.+..+++++.++++..++.+.+..+|.|++|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765556677888999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeec
Q 001371 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 543 IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~G 602 (1091)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999887668999999999988889999999999998764
No 63
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.4e-45 Score=411.77 Aligned_cols=218 Identities=32% Similarity=0.538 Sum_probs=190.5
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH---Hh
Q 001371 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~---lr 459 (1091)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++.++ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 247999999999999999999999999999999999999999999999999999887654 57
Q ss_pred hceeEEeccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 001371 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRia 532 (1091)
++|+||+|++.+|. .|++||+.++.. ..+ ++++.++++..++.+..++.| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 799999997532 122 244667777777766655443 579999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhc
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
|||||..+|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.++. ||+|++|++|+|++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999988754 7899999999999865 99999999999999999999986
Q ss_pred CCC
Q 001371 610 DPE 612 (1091)
Q Consensus 610 ~~~ 612 (1091)
.+.
T Consensus 231 ~p~ 233 (343)
T TIGR02314 231 HPK 233 (343)
T ss_pred CCC
Confidence 543
No 64
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3e-45 Score=386.09 Aligned_cols=214 Identities=34% Similarity=0.545 Sum_probs=193.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.++++|++|+|+ ++++|+|+||+|++||+++|+||+|||||||+++|.|+.+|.+|+|.+||.++.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999996 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccC-ccccccHHHHhccCCCC----------CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 463 GLVSQEP-VLFTGSIKDNIAYGKDD----------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 463 a~V~Q~~-~Lf~~TIreNI~~g~~~----------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
|||||++ .-|.-||+|=+.+|+-. .|++.+.+|++.+++.++-.+. + ..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-------~----~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-------V----DELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-------c----cccChhHHHHH
Confidence 9999996 46778999999999521 2334578889999998876542 2 46999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchh-hhccCeEEEEeCCEEeeecChhHHh
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLST-VRNADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~-i~~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
.|||||.++|+||+||||||+||....-.+.+.++++. +++|+|+|.|.+.. .+.||++++|++|+|+.+|+++|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999998876 46999999999976 6789999999999999999999988
Q ss_pred cC
Q 001371 609 ED 610 (1091)
Q Consensus 609 ~~ 610 (1091)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
No 65
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-45 Score=400.21 Aligned_cols=216 Identities=31% Similarity=0.563 Sum_probs=194.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++.+|++. .+|+|+||+|++||+++++|||||||||++++|.|+.+|++|+|.|||.++++++++. +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2999999999999999999999999999999999999999999999999999999875 689
Q ss_pred eEEeccCcccc-ccHHHHhccCCCC------CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~~------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
|+|+|+.-||. .||+|||.||-.. .-++++.++++..++.+.+++.| .+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 99999999997 5999999999542 23678999999999999999888 479999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcCCC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 612 (1091)
||.++|++++||||+|+||++....+..-|+++.+ +.|+|.|||+.... .-||+|.||++|+|.+.|++.|+..++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999998888888876542 57999999997654 5699999999999999999999998754
Q ss_pred ch
Q 001371 613 GA 614 (1091)
Q Consensus 613 ~~ 614 (1091)
..
T Consensus 227 n~ 228 (338)
T COG3839 227 NL 228 (338)
T ss_pred ch
Confidence 43
No 66
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.5e-45 Score=351.67 Aligned_cols=209 Identities=33% Similarity=0.572 Sum_probs=187.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|.+++|.|+|...+ -..+++|++||++||+||||||||||++++.||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56789999996422 368899999999999999999999999999999999999999999999887765 45799
Q ss_pred EEeccCcccc-ccHHHHhccCC-C-----CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFT-GSIKDNIAYGK-D-----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~-~TIreNI~~g~-~-----~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
+++||..||. -||++||.+|. | ..+.++++.++..+++.++.++||. .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999997 59999999995 2 2346789999999999999999994 699999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcC
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|+|+.||++||||+|||||.-...+..-+.++. ++.|+++|||+++-++ .+|+++++++|+|+.+|.-+++.+.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999998888877776654 4679999999999875 5999999999999999999999875
No 67
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.6e-44 Score=365.08 Aligned_cols=224 Identities=35% Similarity=0.566 Sum_probs=195.1
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChH---HH
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WI 458 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~---~l 458 (1091)
..|++++|+|+|. ++.||+||||+|++||.++|+||||||||||+++|.|+..|++|+|.++|.|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 3599999999996 35799999999999999999999999999999999999999999999999999999875 56
Q ss_pred hhceeEEeccCccccc-cHHHHhccCC---CCCCHHHHHH----HHHHcccHHH-HhhCCCCcccccccCCCCCChHHHH
Q 001371 459 RKKIGLVSQEPVLFTG-SIKDNIAYGK---DDATTEEIRV----ATELANAAKF-IDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 459 r~~ia~V~Q~~~Lf~~-TIreNI~~g~---~~~~~~~i~~----a~~~a~l~~~-i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
|+++|+++|+--||+. ||+||+.|.- .+.+++++++ -+++++|... .+.+| ..||||.+.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 8999999999999986 9999999853 2344555443 4677888776 55666 579999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhH
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 606 (1091)
|+|||||+.-||+|+++|||||+|||.+...|.+-|+++. -+-|+|+|||+++++.. ||+|++|.||+|+..||++|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999988887654 37899999999998765 89999999999999999999
Q ss_pred HhcCCCchhHHHH
Q 001371 607 LVEDPEGAYSQLI 619 (1091)
Q Consensus 607 L~~~~~~~y~~l~ 619 (1091)
|.+.++...++++
T Consensus 233 l~~sd~P~v~qf~ 245 (263)
T COG1127 233 LLASDDPWVRQFF 245 (263)
T ss_pred HHhCCCHHHHHHh
Confidence 9987554444443
No 68
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-44 Score=402.82 Aligned_cols=221 Identities=27% Similarity=0.500 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCC-------
Q 001371 383 DIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF------- 453 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~------- 453 (1091)
.|+++|++|+|++.. +.++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 589999999997421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------ChHHHhhceeEEeccC--ccccccHHHHhccCCC--CCCHHHHHHHHHHcccHHHHhhCCCCcc-cccccC
Q 001371 454 ---------QLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGID-TLVGEH 519 (1091)
Q Consensus 454 ---------~~~~lr~~ia~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~-T~vge~ 519 (1091)
+...+|++|+||+|+| .+|+.||+|||.|+.. ..++++..+ . ..+.++.+ |++ ...+..
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 7999999999998732 233333321 1 12334444 443 346677
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhh-hccCeEEEEeCCE
Q 001371 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV-RNADMIAVIHRGK 597 (1091)
Q Consensus 520 G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i-~~aD~Iivl~~G~ 597 (1091)
+.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|.++. +++|+|+|||+++.+ +.||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999999999998764 578999999999987 5699999999999
Q ss_pred EeeecChhHHhcC
Q 001371 598 IVEKGTHSKLVED 610 (1091)
Q Consensus 598 Ive~Gt~~eL~~~ 610 (1091)
|++.|+++++...
T Consensus 254 i~~~g~~~~~~~~ 266 (320)
T PRK13631 254 ILKTGTPYEIFTD 266 (320)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999999765
No 69
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=5e-41 Score=388.64 Aligned_cols=468 Identities=16% Similarity=0.145 Sum_probs=358.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCcc------HHHHHHHhHHHHHHHHHHH
Q 001371 107 VKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTG------EVVGRMSGDTVLIQDAMGE 180 (1091)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G------~l~~r~~~D~~~i~~~~~~ 180 (1091)
..|.+++.+..++...+.|+...+..+...-+-+.+.++-+.....|+.. ..| ..=+|+..|+..+.+....
T Consensus 90 ~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t~~ 167 (604)
T COG4178 90 QVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETTLD 167 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhHHH
Confidence 34444445555566667777777777888888889999988888555443 333 2347999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 181 KVGKFLQLMATFLGGFLIAF---------------IKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASV 245 (1091)
Q Consensus 181 ~~~~~~~~~~~~i~~~~~~~---------------~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1091)
....++.++.+++....++. .+...+..++++.+++..++..++++...+...+..+..+..-..
T Consensus 168 l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~ 247 (604)
T COG4178 168 LSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS 247 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 88888888777776665554 222334445555566666666778888888877777777888888
Q ss_pred HHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 001371 246 VEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVN 325 (1091)
Q Consensus 246 ~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~ 325 (1091)
+...-++...|-+|+.|+.+.++.++......+...+......-...+......++.++-+..+......|.++.|.++.
T Consensus 248 Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmq 327 (604)
T COG4178 248 LVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQ 327 (604)
T ss_pred HHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHH
Confidence 88888999999999999988887776666555543333333322233333344444455555566677899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--C-CCcCCCC-Ccc---cCCCCCcEEEEeEEEECCCCCC
Q 001371 326 VMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP--E-IDAYDTK-GKI---LDDIRGDIELRDVYFSYPARPN 398 (1091)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~-~~~~~~~-~~~---~~~~~~~I~~~~vsf~Y~~~~~ 398 (1091)
....+......++.+...+..+..-++...|+.++...-+ + .+..... ... ....+..|+|+|++..-|+.
T Consensus 328 a~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-- 405 (604)
T COG4178 328 AVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-- 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--
Confidence 7766666677888888888888888888999888763221 1 0000000 000 01114679999999998753
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHH
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIre 478 (1091)
...|+++||++++|+.+-|.||||||||||+++|.|+++--+|+|..-.. ..+-|+||.|++-.||+||
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLre 474 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLRE 474 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHHH
Confidence 47899999999999999999999999999999999999999999977521 2589999999999999999
Q ss_pred HhccCCCC--CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHH
Q 001371 479 NIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1091)
Q Consensus 479 NI~~g~~~--~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~ 556 (1091)
=|+|.++. ++|+++.+++.+|+|.+++++|.+-.+ -..-||+|||||||+||.++++|++++|||+|||||++
T Consensus 475 ~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 475 ALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549 (604)
T ss_pred HHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence 99998754 899999999999999999999865333 55689999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEe
Q 001371 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1091)
Q Consensus 557 te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~ 594 (1091)
+|..+.+.+++.+.+.|+|-|.||.......++.+-++
T Consensus 550 ~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 550 TEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999999999998888777766554
No 70
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-44 Score=373.41 Aligned_cols=198 Identities=37% Similarity=0.562 Sum_probs=177.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.+++++|+.+|++ ..||+|+||+|++||+++||||||||||||+++|.|+.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4789999999974 5799999999999999999999999999999999999999999999999888443 3469
Q ss_pred eEEeccCcccc-ccHHHHhccCCCCC------CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~~~------~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+||+|++.||. -||+||+.||-+.. .+++..++++.++|.+|-+..| .+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999998 79999999986432 2456888999999999988888 479999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchh-hhccCeEEEEeC--CEEe
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLST-VRNADMIAVIHR--GKIV 599 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~-i~~aD~Iivl~~--G~Iv 599 (1091)
||..+|+||+||||+||||+.|...+|+-+.++. .++|+++|||.++. +--+|||+||.+ |+|.
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999999998765 45999999999976 566999999998 4453
No 71
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=4.8e-44 Score=385.44 Aligned_cols=219 Identities=50% Similarity=0.835 Sum_probs=200.4
Q ss_pred CCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHh
Q 001371 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1091)
Q Consensus 380 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr 459 (1091)
..+.|+++|++++|+++...++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34679999999999753234799999999999999999999999999999999999999999999999999888888888
Q ss_pred hceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
+.++|++|++.+|+.|++||+.++....+.+++.+..+...++++++.+|.|+++.+.++..+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998765455555666666778899999999999999999999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEE
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~I 598 (1091)
+|+++||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988777899999999999989999999999975
No 72
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-44 Score=382.08 Aligned_cols=215 Identities=38% Similarity=0.660 Sum_probs=197.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcccc-CCChHHHhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK-EFQLQWIRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~-~~~~~~lr~~ 461 (1091)
-|+++|++|+|+++ .++|+|+||+|++|+.++|+|++|||||||+++|.|++.|++|.|.+||.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999854 68999999999999999999999999999999999999999999999999998 5889999999
Q ss_pred eeEEeccC--ccccccHHHHhccCCCC--CCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 462 IGLVSQEP--VLFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 462 ia~V~Q~~--~Lf~~TIreNI~~g~~~--~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
+|||.|+| .+|..||.|.+.||-.+ .+. +++.++++.+++.++.++-| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 89999999999999532 233 45788999999988866665 5799999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|.+|..+|+|||||||||+||+...+.+.+.++++.+ ++|+|+|||++..+.. ||+++||++|+++.+|+++|+.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999998764 4799999999999877 999999999999999999998865
No 73
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.2e-44 Score=369.26 Aligned_cols=206 Identities=35% Similarity=0.523 Sum_probs=176.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChH---HHh
Q 001371 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~---~lr 459 (1091)
++++||+..|.... ..++|+++||+|++||++||+||||||||||+++|-|+-.|++|.|.++|.|+..++.+ .+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 24799999999999999999999999999999999999999999999999999999853 344
Q ss_pred -hceeEEeccCcccc-ccHHHHhccC----CCCC--CHHHHHHHHHHcccHHHHh-hCCCCcccccccCCCCCChHHHHH
Q 001371 460 -KKIGLVSQEPVLFT-GSIKDNIAYG----KDDA--TTEEIRVATELANAAKFID-KLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 460 -~~ia~V~Q~~~Lf~-~TIreNI~~g----~~~~--~~~~i~~a~~~a~l~~~i~-~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
++||||+|+..|+. -|++|||.+. .... ..++..+.++..++.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 67999999999887 4999999842 2211 2455666677777766554 444 5799999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhccCeEEEEeCCEEee
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive 600 (1091)
+||||||+.+|+|++.||||+|||+++.+.|.+.+.+.. .++|+|+|||.......|||++.|+||++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999998874 4789999999999999999999999999543
No 74
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.3e-44 Score=386.94 Aligned_cols=212 Identities=37% Similarity=0.590 Sum_probs=186.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccC-----CCCCcEEEECCccccCCC--hH
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLIDGINLKEFQ--LQ 456 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~-----~~~~G~I~idg~~i~~~~--~~ 456 (1091)
|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|+|++ +|++|+|.++|.++.+++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999963 46999999999999999999999999999999999999 999999999999998877 56
Q ss_pred HHhhceeEEeccCccccccHHHHhccCCCCC-------CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA-------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 457 ~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~-------~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
.+|++++|++|++.+|+.|++||+.++.... .++++.++++..++.+.+.+.++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 7888999999999999889999998753211 13456677777777665544332 4689999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
|++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++|+
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999998865689999999999876 5999999999999999998764
No 75
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-44 Score=364.19 Aligned_cols=225 Identities=31% Similarity=0.514 Sum_probs=189.0
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCC-ChHHHhh
Q 001371 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRK 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~-~~~~lr~ 460 (1091)
.++++|+++.|+... ..++|+||||+|.+||+.+|||+||||||||.++|+|+-+|++|+|.+||.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999997431 12599999999999999999999999999999999999999999999999776554 3446788
Q ss_pred ceeEEeccCcc-cc--ccHHHHhc----cCCCCCCHHHHHHHHHHcccHH-HHhhCCCCcccccccCCCCCChHHHHHHH
Q 001371 461 KIGLVSQEPVL-FT--GSIKDNIA----YGKDDATTEEIRVATELANAAK-FIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 461 ~ia~V~Q~~~L-f~--~TIreNI~----~g~~~~~~~~i~~a~~~a~l~~-~i~~lp~G~~T~vge~G~~LSGGQkQRia 532 (1091)
.|-+|+|||.- +| -||++-|. .+.-+..++++.++++.+++.+ +..+.| ..||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 99999999962 33 36666553 2111234567899999999955 666666 469999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCC--eEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhc
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~--T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
|||||.-+|++|||||||||||+...+.|.+.+.++.+++ |.|+|||.++.+.+ ||||+||++|+|+|.++-+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999998877655 99999999999987 99999999999999999999987
Q ss_pred CCCchhHHH
Q 001371 610 DPEGAYSQL 618 (1091)
Q Consensus 610 ~~~~~y~~l 618 (1091)
.+.-.|.+.
T Consensus 232 ~~~h~ytr~ 240 (252)
T COG1124 232 HPSHPYTRE 240 (252)
T ss_pred CCccHHHHH
Confidence 644445443
No 76
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-44 Score=387.88 Aligned_cols=213 Identities=34% Similarity=0.541 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh---HHHhh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~---~~lr~ 460 (1091)
|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 469999999999999999999999999999999999999999999999999987764 56788
Q ss_pred ceeEEeccCccccc-cHHHHhccCCC---CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 001371 461 KIGLVSQEPVLFTG-SIKDNIAYGKD---DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~~-TIreNI~~g~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRia 532 (1091)
.|+||+|++.+|.. |++||+.++.. ..+. +++.++++..++.++..+ ...+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL-----------YPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 99999999999986 99999987631 1232 334555666665444332 23579999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhc
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
||||++++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999988753 7899999999998765 99999999999999999999875
Q ss_pred C
Q 001371 610 D 610 (1091)
Q Consensus 610 ~ 610 (1091)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 4
No 77
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-44 Score=397.06 Aligned_cols=217 Identities=35% Similarity=0.595 Sum_probs=195.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++||+.+|. +..+++|+||+|++||++++.|||||||||++++|.||..|++|+|.+||.|+.+++++ +++|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 589999999996 45899999999999999999999999999999999999999999999999999998876 6789
Q ss_pred eEEeccCcccc-ccHHHHhccCCC----CC---CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKD----DA---TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~----~~---~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
++|+|+.-||. .||+|||.||-. .. -++++.++++.+++.++-.+.| ..|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 99999999996 799999999954 11 2247899999999999887776 57999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCch-hhhccCeEEEEeCCEEeeecChhHHhcCC
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls-~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~ 611 (1091)
|||..+|++||||||.||||.+-...++..++++. .|.|.|+|||.-. .+.-+|||+||++|+|...||++|+..++
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999998888887653 4789999999975 47789999999999999999999999876
Q ss_pred Cchh
Q 001371 612 EGAY 615 (1091)
Q Consensus 612 ~~~y 615 (1091)
...|
T Consensus 229 ~~~f 232 (352)
T COG3842 229 ATRF 232 (352)
T ss_pred chHH
Confidence 5444
No 78
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-44 Score=394.28 Aligned_cols=217 Identities=33% Similarity=0.552 Sum_probs=193.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++++|++....++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999742224699999999999999999999999999999999999999999999999999888888899999
Q ss_pred eEEeccCc--cccccHHHHhccCCCC--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 463 GLVSQEPV--LFTGSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 463 a~V~Q~~~--Lf~~TIreNI~~g~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
+||+|+|. ++..||+|||.|+... .+ ++++.++++..++.++.++.| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999984 6678999999987421 22 345778888888877766554 57999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999988753 7999999999999988999999999999999999988765
No 79
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=387.40 Aligned_cols=218 Identities=32% Similarity=0.489 Sum_probs=192.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCcEEEECCccccCCChHHHh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWIR 459 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~---~~~G~I~idg~~i~~~~~~~lr 459 (1091)
.|+++|+++.|++ +++|+|+||++++||.++|+||+|||||||+++|+|+++ |++|+|.+||.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 479999999999999999999999999999999999985 6999999999999988888889
Q ss_pred hceeEEeccCccccccHHHHhccCCC--------CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 460 KKIGLVSQEPVLFTGSIKDNIAYGKD--------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~TIreNI~~g~~--------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
+.++|+||++.+|+.|++||+.++.. +..++++.++++.+++.+++.. ...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 99999999999999999999987621 1123356677777777665543 23456678999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcC
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
+||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++|+...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999999875 5999999999999999999998754
No 80
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.7e-44 Score=346.71 Aligned_cols=208 Identities=29% Similarity=0.496 Sum_probs=185.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh---HHHhh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~---~~lr~ 460 (1091)
|+|+||+.+|++. +++|+||||+|++||++-++||||||||||+++|++...|+.|+|.++|+|+..+.- ..+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999863 679999999999999999999999999999999999999999999999999988765 45999
Q ss_pred ceeEEeccCcccc-ccHHHHhccCC------CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 461 KIGLVSQEPVLFT-GSIKDNIAYGK------DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~-~TIreNI~~g~------~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
+||+|+||--|.. -|+.||+.|.- |..-.+++.++++.++|.+-...||. .|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 9999999998765 69999999863 22224678899999999999999994 799999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHH-cCCCeEEEEccCchhhhcc-CeEEEEeCCEEeeecCh
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRNA-DMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~a-D~Iivl~~G~Ive~Gt~ 604 (1091)
|||+..+|++||-||||-+||+.+...|.+.+.++ ..|.||++.||..+.+..+ .+++.|++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999988888888775 3689999999999999774 57999999999875443
No 81
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-44 Score=358.37 Aligned_cols=213 Identities=32% Similarity=0.534 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC---hHHHh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIR 459 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~---~~~lr 459 (1091)
.|+++||+..||+ ++.+|+||||+|++||.|||+||||||||||++.|.|+.+|++|+|.++|.++..+. ++.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999985 468999999999999999999999999999999999999999999999999999888 56778
Q ss_pred hceeEEeccCcccc-ccHHHHhccCCCC-----------CCHHH---HHHHHHHcccHHHHhhCCCCcccccccCCCCCC
Q 001371 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD-----------ATTEE---IRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~-~TIreNI~~g~~~-----------~~~~~---i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 524 (1091)
++||+++|++.|-+ -|+.+|++.|.-. .+.++ ..++++..++.+.- -.+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A-----------~qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA-----------YQRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH-----------HHHhccCC
Confidence 89999999999887 4899999988521 23333 44566666665543 34667899
Q ss_pred hHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEeCCEEeee
Q 001371 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEK 601 (1091)
Q Consensus 525 GGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~ 601 (1091)
|||+||++|||||+++|+|+|-|||+|+|||.+.+.|.+.|++.. .|.|+|+.-|.+.+.+ +||||+-|++|+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998764 5789999999999875 5999999999999999
Q ss_pred cChhHHh
Q 001371 602 GTHSKLV 608 (1091)
Q Consensus 602 Gt~~eL~ 608 (1091)
|+.+||-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999964
No 82
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=400.97 Aligned_cols=218 Identities=30% Similarity=0.524 Sum_probs=192.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.+++.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3889999999942 34799999999999999999999999999999999999999999999999999887754 4789
Q ss_pred eEEeccCcccc-ccHHHHhccCCCC--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+||+|++.+|. .||+|||.|+... .+ ++++.++++..++.++..+.| .+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 6999999987431 22 345778888888888877766 479999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcCCC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 612 (1091)
||+++|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||++..+ ..||+|++|++|+|++.|+++|+.+++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999988754 78999999999876 4699999999999999999999987654
Q ss_pred chh
Q 001371 613 GAY 615 (1091)
Q Consensus 613 ~~y 615 (1091)
..|
T Consensus 228 ~~~ 230 (356)
T PRK11650 228 STF 230 (356)
T ss_pred cHH
Confidence 333
No 83
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-43 Score=369.75 Aligned_cols=210 Identities=30% Similarity=0.517 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++|+|.+ . ++|+||||+|++|++++|+||+|||||||+++|+|+.+|.+|+|.++|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 5899999999963 2 69999999999999999999999999999999999999999999999988766543 4689
Q ss_pred eEEeccC---ccccccHHHHhccCCCC----------CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 463 GLVSQEP---VLFTGSIKDNIAYGKDD----------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 463 a~V~Q~~---~Lf~~TIreNI~~g~~~----------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
|||||.. |=|.-||+|=+.+|... .+.+++.+|++.+++.++.. -+||| |||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~~----LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIGE----LSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Ccccc----cCcHHHH
Confidence 9999954 77999999999998421 23588999999999998754 45665 9999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
|+-|||||.++|++|+|||||+++|+.++..|.+-|.++.+ |+|+++|||.++.+. ++|+|+.|+ +++...|+.+|.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999988764 899999999999876 599999995 678899999998
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
...
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
No 84
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.1e-43 Score=401.56 Aligned_cols=207 Identities=33% Similarity=0.562 Sum_probs=183.1
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH----hhceeEEeccCcccc-
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RKKIGLVSQEPVLFT- 473 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l----r~~ia~V~Q~~~Lf~- 473 (1091)
+++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++..++...+ |++|+||+|++++|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred ccHHHHhccCCCC--C----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEee
Q 001371 474 GSIKDNIAYGKDD--A----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547 (1091)
Q Consensus 474 ~TIreNI~~g~~~--~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLD 547 (1091)
.||+|||.|+.+. . .++++.++++.++|.+++.+.| .+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999986421 1 2355677788887776655544 479999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcCCCchhH
Q 001371 548 EATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1091)
Q Consensus 548 E~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~ 616 (1091)
||||+||+.+.+.+++.+.++. .++|+|+|||+++.+ +.||+|++|++|+|++.|+++|+++++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999998764 379999999999975 56999999999999999999999876444443
No 85
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.8e-43 Score=370.96 Aligned_cols=203 Identities=34% Similarity=0.602 Sum_probs=183.2
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
+.++++|++++|++. ..++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999742 2479999999999999999999999999999999999999999999999999998888888999
Q ss_pred eeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC
Q 001371 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~ 541 (1091)
|+||+|+|.+|++|++|||.+..+ .+++++.++++ +..+...||||||||++||||++++|
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999987643 45555444433 34567899999999999999999999
Q ss_pred CEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecCh
Q 001371 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 542 ~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~ 604 (1091)
+++||||||++||+.+.+.+.+.|+++.+++|+|++||++..+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999988778999999999999988999999999999998863
No 86
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-43 Score=384.36 Aligned_cols=220 Identities=32% Similarity=0.477 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~--~~~ 455 (1091)
-|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|.|+++| ++|+|.++|.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5899999999963 4699999999999999999999999999999999999997 48999999998863 345
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCCC---CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~---~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..+|++++||+|++.+|+.|++|||.++... .+ ++++.++++.+++.+.+ ++.+++ +..+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 6788899999999999999999999986321 11 34556667776664433 233444 4568999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877889999999999875 4999999999999999999999
Q ss_pred hcCCC
Q 001371 608 VEDPE 612 (1091)
Q Consensus 608 ~~~~~ 612 (1091)
.+++.
T Consensus 237 ~~~~~ 241 (254)
T PRK14273 237 FFNPK 241 (254)
T ss_pred HhCCC
Confidence 76533
No 87
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-43 Score=399.05 Aligned_cols=216 Identities=31% Similarity=0.562 Sum_probs=190.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .+++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5899999999963 469999999999999999999999999999999999999999999999999987764 35789
Q ss_pred eEEeccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+||+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++..+.| ..||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999998742 112 346677888888876655544 579999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcCCC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 612 (1091)
||+++|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ .-||+|+||++|+|++.|+++++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988754 78999999999987 5599999999999999999999987654
Q ss_pred ch
Q 001371 613 GA 614 (1091)
Q Consensus 613 ~~ 614 (1091)
..
T Consensus 230 ~~ 231 (351)
T PRK11432 230 SR 231 (351)
T ss_pred ch
Confidence 33
No 88
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-43 Score=379.21 Aligned_cols=222 Identities=34% Similarity=0.615 Sum_probs=190.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++|+|++ .++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4889999999963 4699999999999999999999999999999999999999999999999999888888889999
Q ss_pred eEEeccCccccccHHHHhccCCC--CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 463 GLVSQEPVLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 463 a~V~Q~~~Lf~~TIreNI~~g~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
+|++|++.+|+.|++||+.++.. ...++++.++++..++.+. ........||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKE----------YATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHH----------HhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999997642 1223455666666665321 12234568999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcCCCchhHH
Q 001371 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~ 617 (1091)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|..
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 999999999999999999999999988653 7999999999999865 9999999999999999999998653333443
No 89
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=8.6e-43 Score=398.40 Aligned_cols=225 Identities=26% Similarity=0.449 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC----CcEEEECCccccCCChHH
Q 001371 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ----AGEVLIDGINLKEFQLQW 457 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~----~G~I~idg~~i~~~~~~~ 457 (1091)
-++++|++..|..... .++++||||+|.+||.+||||.|||||||+.+.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4789999999975422 25999999999999999999999999999999999999988 899999999999999876
Q ss_pred Hh----hceeEEeccCc-cccc--cHHHHhc----cCCC---CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCC
Q 001371 458 IR----KKIGLVSQEPV-LFTG--SIKDNIA----YGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1091)
Q Consensus 458 lr----~~ia~V~Q~~~-Lf~~--TIreNI~----~g~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~L 523 (1091)
+| +.||||+|+|+ .+|- ||.+-|. ...+ +...++..+.++.+++.+-... ..--..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 64 47999999996 6764 5655543 2221 1123445566666666543332 2344689
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeCCEEee
Q 001371 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1091)
Q Consensus 524 SGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive 600 (1091)
|||||||+.||+||..+|++||+||||.|||+.+++.|.+.|+++. .|.++|+|||.+..+.+ ||+|+||++|+|+|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998876 57899999999999876 99999999999999
Q ss_pred ecChhHHhcCCCchhH
Q 001371 601 KGTHSKLVEDPEGAYS 616 (1091)
Q Consensus 601 ~Gt~~eL~~~~~~~y~ 616 (1091)
.|+.+++++++...|.
T Consensus 236 ~G~~~~i~~~p~hpYT 251 (539)
T COG1123 236 TGPTEEILSNPQHPYT 251 (539)
T ss_pred ecCHHHHHhccCCccc
Confidence 9999999987544443
No 90
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.4e-42 Score=380.09 Aligned_cols=217 Identities=29% Similarity=0.489 Sum_probs=195.6
Q ss_pred CCCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHh
Q 001371 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1091)
Q Consensus 380 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr 459 (1091)
..+.|+++|+++.+ +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------ 98 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------ 98 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence 34579999999952 3699999999999999999999999999999999999999999999998
Q ss_pred hceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
.|+|++|++++|++|++||+.++.. ..+.++.++++.+++.+.+..+|.+++|.+++++.+||||||||++||||+++
T Consensus 99 -~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 99 -RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred -EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 5999999999999999999998743 34456677888889999999999999999999999999999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHH-HHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhH
Q 001371 540 DPRILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~-l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~ 616 (1091)
+|+||||||||++||+.+...+.+. ++.+.+++|+|+|||++..+..||+|++|++|++++.|+++++.+. ...|.
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~ 253 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFS 253 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHH
Confidence 9999999999999999998888765 4555568999999999999999999999999999999999999764 33343
No 91
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-43 Score=386.75 Aligned_cols=213 Identities=33% Similarity=0.584 Sum_probs=190.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++|+|++ ..++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.+||.++.+.+...+|++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 3899999999963 24699999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEeccC--ccccccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 463 GLVSQEP--VLFTGSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 463 a~V~Q~~--~Lf~~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
+||+|+| .++..|++|||.|+.. ..+ ++++.++++.+++.+...+.| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6888999999998632 122 345778888888887766655 37999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHh
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
|||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999998874 4789999999999984 69999999999999999987653
No 92
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-43 Score=397.74 Aligned_cols=217 Identities=35% Similarity=0.561 Sum_probs=186.3
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH---Hh
Q 001371 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~---lr 459 (1091)
|+++|++|+|++.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999997311 357999999999999999999999999999999999999999999999999998887654 47
Q ss_pred hceeEEeccCcccc-ccHHHHhccCCC--CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 001371 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~-~TIreNI~~g~~--~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRia 532 (1091)
++|+||+|++.+|. .|++|||.++.. ..+. +++.++++..++.++.. ....+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 89999999999986 699999987632 1222 34455555555544433 334579999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhc
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
|||||+++|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988753 7899999999999875 99999999999999999999986
Q ss_pred CC
Q 001371 610 DP 611 (1091)
Q Consensus 610 ~~ 611 (1091)
.+
T Consensus 231 ~~ 232 (343)
T PRK11153 231 HP 232 (343)
T ss_pred CC
Confidence 53
No 93
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=5.7e-43 Score=382.01 Aligned_cols=217 Identities=32% Similarity=0.506 Sum_probs=187.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CcEEEECCccccCC--ChH
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKEF--QLQ 456 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~-----~G~I~idg~~i~~~--~~~ 456 (1091)
|+++|++++|++ .++|+|+||+|++||+++|+|++|||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 36999999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhhceeEEeccCccccccHHHHhccCCCC---CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 457 ~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~---~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
.+|++++||||++.+|+.|++||+.++... .+ ++++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 678899999999999999999999875311 11 234566677777654331 1234455689999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHh
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||++..+. .||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998876789999999999875 59999999999999999999987
Q ss_pred cC
Q 001371 609 ED 610 (1091)
Q Consensus 609 ~~ 610 (1091)
..
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 64
No 94
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-43 Score=383.27 Aligned_cols=218 Identities=32% Similarity=0.514 Sum_probs=189.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-----~~~G~I~idg~~i~~--~~~ 455 (1091)
.|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 469999999999999999999999999999999999975 589999999999865 345
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCC--C-----CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--D-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~--~-----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..+|++++||+|++.+|+.|++||+.++.. . ..++++.++++.+++.+++. +.......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 678889999999999999999999987521 0 12345667777777755443 233455678999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877889999999999885 5999999999999999999999
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 765
No 95
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.3e-43 Score=369.04 Aligned_cols=200 Identities=34% Similarity=0.553 Sum_probs=182.4
Q ss_pred EEEEeEEEECCCCCC--CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 384 IELRDVYFSYPARPN--EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~--~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
|+++||+++|++..+ +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999974311 3699999999999999999999999999999999999999999999999 7
Q ss_pred eeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC
Q 001371 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~ 541 (1091)
|+|++|+|.+|+.|++||+.++.. .+++++.++++.+++.+++..+|.|++|.+++++.+||||||||++||||++++|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998754 4566788889999999999999999999999999999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHhHHHHHH-HHHHHc-CCCeEEEEccCchhhhccCeEEEEeCCE
Q 001371 542 RILLLDEATSALDAESEKVVQE-ALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1091)
Q Consensus 542 ~IliLDE~tSaLD~~te~~i~~-~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~ 597 (1091)
+++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||+|++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999998887766 455553 4689999999999998899999999985
No 96
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-43 Score=388.52 Aligned_cols=218 Identities=32% Similarity=0.565 Sum_probs=186.1
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC--hHHHh
Q 001371 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--LQWIR 459 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~--~~~lr 459 (1091)
|+++||+|+|++.. .+++|+||||+|++||++||+||+|||||||+++|+|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 147999999999999999999999999999999999999999999999999998754 45788
Q ss_pred hceeEEeccC--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 460 KKIGLVSQEP--VLFTGSIKDNIAYGKD--DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 460 ~~ia~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
++|+||||+| .+|+.|++|||.|+.. ..+.+ ++.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 6889999999998632 23333 345566666553 11223445578999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHh
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999988753 789999999999874 69999999999999999999986
Q ss_pred cC
Q 001371 609 ED 610 (1091)
Q Consensus 609 ~~ 610 (1091)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 54
No 97
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=5.8e-43 Score=396.93 Aligned_cols=217 Identities=30% Similarity=0.474 Sum_probs=189.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+.. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999877654 6789
Q ss_pred eEEeccCcccc-ccHHHHhccCCCC--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+||+|++.+|. .|++|||.|+... .+ ++++.++++..++.++.++ ...+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~-----------~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERK-----------YPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999995 7999999987431 12 3456666777666655544 34689999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcCCC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 612 (1091)
||+++|+++|||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. -||+|++|++|+|++.|+++|+.+++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988754 789999999999864 599999999999999999999998754
Q ss_pred chh
Q 001371 613 GAY 615 (1091)
Q Consensus 613 ~~y 615 (1091)
..|
T Consensus 228 ~~~ 230 (353)
T TIGR03265 228 TPF 230 (353)
T ss_pred CHH
Confidence 333
No 98
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-43 Score=386.05 Aligned_cols=216 Identities=32% Similarity=0.569 Sum_probs=193.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++||+++|++. .+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++.+.+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999642 35699999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEeccC--ccccccHHHHhccCCCC--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 463 GLVSQEP--VLFTGSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 463 a~V~Q~~--~Lf~~TIreNI~~g~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
+|++|+| .+++.|++|||.++... .+ ++++.++++..++.+++...| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 56778999999986321 12 245777888888888777665 37999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 7899999999999989999999999999999999998764
No 99
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=380.98 Aligned_cols=220 Identities=33% Similarity=0.529 Sum_probs=190.5
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCcEEEECCccccC--C
Q 001371 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--F 453 (1091)
Q Consensus 381 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-----~~~G~I~idg~~i~~--~ 453 (1091)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 346999999999963 469999999999999999999999999999999999986 589999999999863 4
Q ss_pred ChHHHhhceeEEeccCccccccHHHHhccCCC---CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChH
Q 001371 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD---DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1091)
Q Consensus 454 ~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 526 (1091)
+...+|++++|++|++.+|..|++||+.++.. ..+ +++++++++..++.+.+. ..+.+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 56678999999999999999999999987632 122 245666777776644332 3345667789999
Q ss_pred HHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChh
Q 001371 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 527 QkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~ 605 (1091)
||||++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||++..+. .||+|++|++|++++.|+.+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877789999999999885 59999999999999999999
Q ss_pred HHhcC
Q 001371 606 KLVED 610 (1091)
Q Consensus 606 eL~~~ 610 (1091)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 98764
No 100
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4.1e-43 Score=375.46 Aligned_cols=203 Identities=31% Similarity=0.530 Sum_probs=177.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChH---HHhh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~---~lr~ 460 (1091)
|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999632 24699999999999999999999999999999999999999999999999999876543 4788
Q ss_pred ceeEEeccCcccc-ccHHHHhccCCC------CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 461 KIGLVSQEPVLFT-GSIKDNIAYGKD------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~-~TIreNI~~g~~------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
+++|++|++.+|. .|++||+.++.. ...++++.++++..++.++..+.| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999887 599999987521 112456777888888877665544 4799999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEE
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~I 598 (1091)
||||+++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998864 47899999999999874 999999999975
No 101
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=386.33 Aligned_cols=216 Identities=28% Similarity=0.526 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccC----CChHH
Q 001371 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQW 457 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~----~~~~~ 457 (1091)
|+++|++|+|+... .+++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997421 1369999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhhceeEEeccC--ccccccHHHHhccCCCC--CCH----HHHHHHHHHcccH-HHHhhCCCCcccccccCCCCCChHHH
Q 001371 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATT----EEIRVATELANAA-KFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 458 lr~~ia~V~Q~~--~Lf~~TIreNI~~g~~~--~~~----~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
+|++++||+|+| .+|+.|+.|||.|+... .+. +++.++++..++. ++. .....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW-----------EKSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc-----------cCCcccCCHHHH
Confidence 899999999998 79999999999987432 222 2345555555553 222 234468999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~e 606 (1091)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998764 4789999999999875 599999999999999999999
Q ss_pred HhcC
Q 001371 607 LVED 610 (1091)
Q Consensus 607 L~~~ 610 (1091)
+..+
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8754
No 102
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-42 Score=378.13 Aligned_cols=212 Identities=33% Similarity=0.518 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++...+. .|+++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3789999999963 469999999999999999999999999999999999999999999999999876553 36789
Q ss_pred eEEeccCcccc-ccHHHHhccCCCCC------C----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKDDA------T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~~~------~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
+||+|+|.+|. .|++||+.++.... + ++++.++++..++.+... ....+||||||||+
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl 145 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----------RYPAQLSGGQRQRV 145 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHH
Confidence 99999999986 69999999863211 1 123455566655544433 33467999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHh
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
+|||||+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 146 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999999999999988753 789999999999865 49999999999999999999987
Q ss_pred cC
Q 001371 609 ED 610 (1091)
Q Consensus 609 ~~ 610 (1091)
+.
T Consensus 226 ~~ 227 (239)
T cd03296 226 DH 227 (239)
T ss_pred cC
Confidence 54
No 103
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.4e-43 Score=379.47 Aligned_cols=217 Identities=29% Similarity=0.534 Sum_probs=184.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH-hhce
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l-r~~i 462 (1091)
++++|++++|++ .++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++.+.+...+ |..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 469999999999999999999999999999999999999999999999999988876654 5679
Q ss_pred eEEeccCccccc-cHHHHhccCCCCCC------------HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKDDAT------------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~~~~------------~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
+||||++.+|.+ |++|||.++..... .++..+ .+++.++.+ |++.........|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARE-----RAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHH-----HHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999986 99999987642111 111111 123344444 4555555666789999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHH
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
|++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999998865 67899999999999865 999999999999999999998
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
...
T Consensus 231 ~~~ 233 (236)
T cd03219 231 RNN 233 (236)
T ss_pred ccC
Confidence 653
No 104
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-42 Score=379.25 Aligned_cols=212 Identities=33% Similarity=0.550 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC---hHHHhh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIRK 460 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~---~~~lr~ 460 (1091)
++++|++++|++ ++++|+|+||++++|++++|+||+|||||||+++|+|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999963 147999999999999999999999999999999999999999999999999998876 456788
Q ss_pred ceeEEeccCcccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCCh
Q 001371 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--------------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~-~TIreNI~~g~~~--------------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSG 525 (1091)
.++||||++.+|. .|++||+.++... ..++++.++++..++.+. ......+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 9999999999887 6999999875321 112344455555554433 3445678999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeec
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~G 602 (1091)
|||||++||||++++|+|||||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999998875 3789999999999987 69999999999999999
Q ss_pred ChhHHh
Q 001371 603 THSKLV 608 (1091)
Q Consensus 603 t~~eL~ 608 (1091)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 998873
No 105
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-43 Score=385.55 Aligned_cols=217 Identities=33% Similarity=0.543 Sum_probs=186.1
Q ss_pred EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH----hh
Q 001371 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RK 460 (1091)
Q Consensus 385 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l----r~ 460 (1091)
.++|++++|+ +.++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.+||.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4567777775 3468999999999999999999999999999999999999999999999999988776543 46
Q ss_pred ceeEEeccCcccc-ccHHHHhccCCC------CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 461 KIGLVSQEPVLFT-GSIKDNIAYGKD------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~-~TIreNI~~g~~------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
+++|++|++.+|. .|++|||.++.. ...++++.++++..++.+++.+.| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 8999999999985 699999987521 112345677888888877766655 3799999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcC
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++|+.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988743 789999999999875 5999999999999999999999865
Q ss_pred CCchh
Q 001371 611 PEGAY 615 (1091)
Q Consensus 611 ~~~~y 615 (1091)
+...|
T Consensus 252 ~~~~~ 256 (269)
T cd03294 252 PANDY 256 (269)
T ss_pred cCcHH
Confidence 34333
No 106
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=9.3e-43 Score=373.95 Aligned_cols=211 Identities=23% Similarity=0.454 Sum_probs=181.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++. .+++|+|+||++++||++||+||+|||||||+++|.|+++|++|+|.++|.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999642 257999999999999999999999999999999999999999999999999987643 66788999
Q ss_pred EEeccCccc-cccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLF-TGSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf-~~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
||+|++.+| +.|++||+.++.. ..+ ++++.++++..++.+.. ++. ..+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKR----ARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hCh----hhhCCHHHHHHHHHHHH
Confidence 999999998 5799999987421 112 23455666666654433 232 35799999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHH
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||++..+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999988778999999999999864 999999999999999999875
No 107
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=381.99 Aligned_cols=220 Identities=33% Similarity=0.515 Sum_probs=190.4
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccC--C
Q 001371 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--F 453 (1091)
Q Consensus 381 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~--~ 453 (1091)
.+.|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 347999999999963 4699999999999999999999999999999999999975 89999999999875 3
Q ss_pred ChHHHhhceeEEeccCccccccHHHHhccCCC--CC--C----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCCh
Q 001371 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DA--T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1091)
Q Consensus 454 ~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~--~~--~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSG 525 (1091)
+...+|+.++||+|+|.+|+.|++||+.++.. .. + ++++.++++..++.+++. +.......+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 45678899999999999999999999987521 11 1 344567777777755442 223455678999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecCh
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~ 604 (1091)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999998877789999999999985 5899999999999999999
Q ss_pred hHHhcC
Q 001371 605 SKLVED 610 (1091)
Q Consensus 605 ~eL~~~ 610 (1091)
+++...
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 998754
No 108
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.5e-42 Score=395.02 Aligned_cols=217 Identities=33% Similarity=0.572 Sum_probs=192.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.. +++|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999877654 5689
Q ss_pred eEEeccCcccc-ccHHHHhccCCCC--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+||+|++.+|. .||+|||.|+... .+ ++++.++++..++.++..+.| .+||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 5999999987421 12 345777888888888877776 479999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcCCC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 612 (1091)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||++..+ ..||+|++|++|+|++.|+++++.+++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988754 78999999999976 4599999999999999999999988754
Q ss_pred chh
Q 001371 613 GAY 615 (1091)
Q Consensus 613 ~~y 615 (1091)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 333
No 109
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-42 Score=382.80 Aligned_cols=217 Identities=31% Similarity=0.522 Sum_probs=191.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++|+|++....++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743234699999999999999999999999999999999999999999999999999888888889999
Q ss_pred eEEeccC--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 463 GLVSQEP--VLFTGSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 463 a~V~Q~~--~Lf~~TIreNI~~g~~--~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
+||+|+| .+++.|+.|||.++.. ..++ +++.++++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4778899999987632 2233 3456777777777665442 357999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|||+++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+..||+|++|++|++++.|+++++.+.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999988754 7899999999999989999999999999999999998765
No 110
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=386.38 Aligned_cols=217 Identities=31% Similarity=0.528 Sum_probs=185.0
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccC----CChHH
Q 001371 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQW 457 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~----~~~~~ 457 (1091)
|+++|++|+|++.. ..++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 1469999999999999999999999999999999999999999999999999864 34567
Q ss_pred HhhceeEEeccC--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 458 lr~~ia~V~Q~~--~Lf~~TIreNI~~g~~--~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
.|+.|+||+|+| .+|+.|++|||.|+.. ..+. +++.++++.+++++.+ .......|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 888999999998 6889999999998732 1233 2345566666664222 12344679999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhH
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~e 606 (1091)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988753 789999999999875 599999999999999999999
Q ss_pred HhcC
Q 001371 607 LVED 610 (1091)
Q Consensus 607 L~~~ 610 (1091)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8754
No 111
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.7e-42 Score=393.04 Aligned_cols=217 Identities=34% Similarity=0.548 Sum_probs=188.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999963 469999999999999999999999999999999999999999999999999987654 46789
Q ss_pred eEEeccCcccc-ccHHHHhccCCCC------CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKDD------AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~~------~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
+||+|++.+|. .|++|||.|+... .+ ++++.++++..++.++.++.| ..||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHH
Confidence 99999999997 5999999987421 12 245666777777766554443 57999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHh
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
+|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988764 689999999999865 49999999999999999999998
Q ss_pred cCCCchh
Q 001371 609 EDPEGAY 615 (1091)
Q Consensus 609 ~~~~~~y 615 (1091)
.++...|
T Consensus 226 ~~p~~~~ 232 (353)
T PRK10851 226 REPATRF 232 (353)
T ss_pred hCccchH
Confidence 7644333
No 112
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-42 Score=385.42 Aligned_cols=221 Identities=31% Similarity=0.550 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCC----ChH
Q 001371 383 DIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQ 456 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~----~~~ 456 (1091)
.|+++|++|+|++.+ .+++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996422 24699999999999999999999999999999999999999999999999998654 346
Q ss_pred HHhhceeEEeccC--ccccccHHHHhccCCC--CCCHHHHHHHHHHcccHHHHhhCCCCccc-ccccCCCCCChHHHHHH
Q 001371 457 WIRKKIGLVSQEP--VLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 457 ~lr~~ia~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T-~vge~G~~LSGGQkQRi 531 (1091)
.+|++|+||+|+| .+|..|++|||.|+.. ..+.++..+. +.+.++.+ |+++ .......+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 7899999999998 6888999999998732 2333333221 12233333 5543 23456678999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHh
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
+|||||+.+|+|+||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998874 4799999999999875 69999999999999999999987
Q ss_pred cC
Q 001371 609 ED 610 (1091)
Q Consensus 609 ~~ 610 (1091)
++
T Consensus 235 ~~ 236 (286)
T PRK13646 235 KD 236 (286)
T ss_pred hC
Confidence 64
No 113
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.9e-42 Score=377.40 Aligned_cols=212 Identities=32% Similarity=0.517 Sum_probs=182.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh---HHHhh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~---~~lr~ 460 (1091)
|+++|++++|+. ++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 3469999999999999999999999999999999999999999999999999887654 34688
Q ss_pred ceeEEeccCcccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCCh
Q 001371 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--------------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~-~TIreNI~~g~~~--------------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSG 525 (1091)
+++||||++.+|. .|++||+.++... ..++++.++++..++.+++ .....+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 9999999999886 6999999875321 1123455555555554433 335568999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeec
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~G 602 (1091)
|||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999988743 789999999999985 59999999999999999
Q ss_pred ChhHHh
Q 001371 603 THSKLV 608 (1091)
Q Consensus 603 t~~eL~ 608 (1091)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999873
No 114
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-42 Score=374.64 Aligned_cols=216 Identities=34% Similarity=0.532 Sum_probs=184.5
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChH---HHh
Q 001371 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~---~lr 459 (1091)
|+++|++++|+++. ..++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999996421 12799999999999999999999999999999999999999999999999999877654 357
Q ss_pred hceeEEeccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 001371 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRia 532 (1091)
+.++|+||++.+|. .|++|||.++.. ..+ .+++.++++..++.+.+.+ ...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 88999999999997 699999987521 112 2345556666666554443 34689999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhc
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 7899999999999865 99999999999999999998865
Q ss_pred C
Q 001371 610 D 610 (1091)
Q Consensus 610 ~ 610 (1091)
.
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
No 115
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-42 Score=379.30 Aligned_cols=218 Identities=31% Similarity=0.470 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCcccc--CCCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK--EFQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~--~~~~ 455 (1091)
.|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|.|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 4699999999999999999999999999999999999987 4999999999987 4566
Q ss_pred HHHhhceeEEeccCccccc-cHHHHhccCCC--C--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChH
Q 001371 456 QWIRKKIGLVSQEPVLFTG-SIKDNIAYGKD--D--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~-TIreNI~~g~~--~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 526 (1091)
..+|++++|++|++.+|.. |++||+.++.. . .+ ++++.++++..++.+++. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 6788899999999999975 99999987521 1 01 234556666666544332 2234456789999
Q ss_pred HHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChh
Q 001371 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 527 QkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~ 605 (1091)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||++..+. .||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877799999999999876 49999999999999999999
Q ss_pred HHhcC
Q 001371 606 KLVED 610 (1091)
Q Consensus 606 eL~~~ 610 (1091)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 98754
No 116
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-42 Score=371.32 Aligned_cols=203 Identities=36% Similarity=0.593 Sum_probs=174.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999963 479999999999999999999999999999999999999999999999999876543 567899
Q ss_pred EEeccCcccc-ccHHHHhccCCCC--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFT-GSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~-~TIreNI~~g~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
||||++.+|. .|++||+.++... .+ ++++.++++..++.+++.+. ..+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999886 6999999876321 11 23455666666665554443 35799999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeec
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~G 602 (1091)
|+++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998864 3789999999999875 49999999999998875
No 117
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.9e-42 Score=392.98 Aligned_cols=217 Identities=31% Similarity=0.508 Sum_probs=190.1
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC--cEEEECCccccCCChHHHh
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDGINLKEFQLQWIR 459 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~--G~I~idg~~i~~~~~~~lr 459 (1091)
+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++ |+|.+||.++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 56999999999963 469999999999999999999999999999999999999999 999999999987665 35
Q ss_pred hceeEEeccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 001371 460 KKIGLVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRia 532 (1091)
+.|+||+|++.+|.. |++|||.|+.. ..+ ++++.++++..++.++..+.| .+||||||||+|
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999965 99999998632 122 245677778877777666655 479999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC---CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHh
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~---~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
|||||.++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987654 689999999999865 59999999999999999999998
Q ss_pred cCCCch
Q 001371 609 EDPEGA 614 (1091)
Q Consensus 609 ~~~~~~ 614 (1091)
+++...
T Consensus 228 ~~p~~~ 233 (362)
T TIGR03258 228 DAPADG 233 (362)
T ss_pred hCcCcH
Confidence 764433
No 118
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.8e-42 Score=394.62 Aligned_cols=221 Identities=26% Similarity=0.483 Sum_probs=195.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|.++.+++.+.+|++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 3789999999963 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccCcc-ccccHHHHhccCCC----------CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 463 GLVSQEPVL-FTGSIKDNIAYGKD----------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 463 a~V~Q~~~L-f~~TIreNI~~g~~----------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
+||+|++.+ |+.|++||+.++.. ..++++++++++..++.++..+ ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 67899999988742 1224567888888888776543 2357999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhc
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
+|||||+++|+||||||||++||+.+...+.+.|+++. +++|+|+++|+++.+ +.||+|++|++|++++.|+++|++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999998875 478999999999998 5699999999999999999999986
Q ss_pred CCCchhHHHH
Q 001371 610 DPEGAYSQLI 619 (1091)
Q Consensus 610 ~~~~~y~~l~ 619 (1091)
. ....+++
T Consensus 229 ~--~~l~~~~ 236 (402)
T PRK09536 229 A--DTLRAAF 236 (402)
T ss_pred c--HHHHHHh
Confidence 4 3344444
No 119
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-42 Score=377.74 Aligned_cols=218 Identities=31% Similarity=0.455 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~--~---~~G~I~idg~~i~~--~~~ 455 (1091)
-|+++|++|+|++ +++|+|+||+|++||+++|+||+|||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 469999999999999999999999999999999999997 3 58999999999864 445
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCCC---CCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~---~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..+|++++|++|++.+|+.|++||+.++... .++ +++.++++..++.+++. +.......+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 6788899999999999999999999876321 122 23445566666654432 233456678999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|+|+||||||++||+++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999875 5999999999999999999998
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
.++
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 765
No 120
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-42 Score=380.10 Aligned_cols=216 Identities=32% Similarity=0.599 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++. ++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 35799999999999999999999999999999999999999999999999999888888899999
Q ss_pred eEEeccC--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 463 GLVSQEP--VLFTGSIKDNIAYGKD--DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 463 a~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
+||+|+| .+++.|++|||.++.. ..+.+ ++.++++..++.+++.+.| .+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4567899999987532 12333 3556667777766655443 58999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999988753 4899999999999889999999999999999999988754
No 121
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-42 Score=380.01 Aligned_cols=220 Identities=33% Similarity=0.501 Sum_probs=190.7
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccC--C
Q 001371 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--F 453 (1091)
Q Consensus 381 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~--~ 453 (1091)
.+.|+++|++|+|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999963 4699999999999999999999999999999999999984 89999999999865 4
Q ss_pred ChHHHhhceeEEeccCccccccHHHHhccCCC--CC-----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChH
Q 001371 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1091)
Q Consensus 454 ~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~--~~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 526 (1091)
+...+|+.++|++|++.+|+.|++|||.++.. .. .++++.++++.+++.+++. +..+..+..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 45678899999999999999999999987531 11 1234666777766655443 2445677899999
Q ss_pred HHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChh
Q 001371 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 527 QkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~ 605 (1091)
||||++||||++++|+|+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999999999998877899999999999875 59999999999999999999
Q ss_pred HHhcC
Q 001371 606 KLVED 610 (1091)
Q Consensus 606 eL~~~ 610 (1091)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 98754
No 122
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-42 Score=382.00 Aligned_cols=215 Identities=25% Similarity=0.490 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcccc--CCChHHHhh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~--~~~~~~lr~ 460 (1091)
-|+++|++|+|++ ++++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999962 346999999999999999999999999999999999999999999999999984 345667889
Q ss_pred ceeEEeccC--ccccccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 001371 461 KIGLVSQEP--VLFTGSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 461 ~ia~V~Q~~--~Lf~~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRia 532 (1091)
.++||+|+| .+|+.|++|||.++.. ..+ ++++.++++..++.++. .....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 999999998 6789999999987532 122 23456666777765543 3346789999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhc
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
|||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988754 789999999999986 699999999999999999999876
Q ss_pred C
Q 001371 610 D 610 (1091)
Q Consensus 610 ~ 610 (1091)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
No 123
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.2e-42 Score=371.76 Aligned_cols=217 Identities=27% Similarity=0.466 Sum_probs=179.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH-hhce
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l-r~~i 462 (1091)
|+++|++++|++ .++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 469999999999999999999999999999999999999999999999999988877654 6789
Q ss_pred eEEeccCccccc-cHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~ 541 (1091)
+|++|++.+|.+ |++||+.++.+.....+..+.++ .+.+.+..++ ........+||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~--~~l~~~~~l~----~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE--RVYELFPRLK----ERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHH--HHHHHHHhhh----hhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 99999988643221111111111 1112221222 2334455679999999999999999999
Q ss_pred CEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhc
Q 001371 542 RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 542 ~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998875 57899999999998755 99999999999999999988753
No 124
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=378.38 Aligned_cols=218 Identities=33% Similarity=0.494 Sum_probs=186.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-----~~~G~I~idg~~i~~--~~~ 455 (1091)
.|+++|++|+|++ .++|+|+||+|++||+++|+|++|||||||+++|+|+++ |++|+|.+||+++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 469999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCCC--C-----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~--~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..+|+.++||+|++.+|+.|++||+.++... . .++++.++++..++++.+ .........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 6678899999999999999999999876321 1 123455566666654211 1123345678999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 999999999999999999998
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 765
No 125
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-42 Score=380.18 Aligned_cols=216 Identities=31% Similarity=0.569 Sum_probs=191.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC---cEEEECCccccCCChHHHh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQLQWIR 459 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~---G~I~idg~~i~~~~~~~lr 459 (1091)
.|+++|++|+|++. ..++|+|+||+|++||+++|+||+|||||||+++|+|+++|++ |+|.+||.++...+...+|
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999642 3469999999999999999999999999999999999999998 8999999999888777888
Q ss_pred hceeEEeccC--ccccccHHHHhccCCCC--CCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 460 KKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 460 ~~ia~V~Q~~--~Lf~~TIreNI~~g~~~--~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
++++||+|+| .+++.|++|||.|+.+. .+. +++.++++.+++.++..+.| .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 46788999999986322 233 34677788888877666555 58999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhc
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
+|||||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988753 789999999999998999999999999999999999875
Q ss_pred C
Q 001371 610 D 610 (1091)
Q Consensus 610 ~ 610 (1091)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
No 126
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-42 Score=381.22 Aligned_cols=217 Identities=26% Similarity=0.499 Sum_probs=191.0
Q ss_pred cEEEEeEEEECCCCC---CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC-hHHH
Q 001371 383 DIELRDVYFSYPARP---NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWI 458 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~---~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~-~~~l 458 (1091)
-|+++|++++|++.. ++++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.+||.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 389999999997421 247999999999999999999999999999999999999999999999999987654 3567
Q ss_pred hhceeEEeccCc--cccccHHHHhccCCCC--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 459 RKKIGLVSQEPV--LFTGSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 459 r~~ia~V~Q~~~--Lf~~TIreNI~~g~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
|++++||+|+|. +|..|+.||+.|+... .+ ++++.++++.+++.+++.+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 889999999984 7777999999986321 12 355778888888887776655 5799999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHh
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
++||||++++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||++++|++|+|++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998874 378999999999999889999999999999999999997
Q ss_pred cC
Q 001371 609 ED 610 (1091)
Q Consensus 609 ~~ 610 (1091)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
No 127
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-42 Score=394.17 Aligned_cols=214 Identities=29% Similarity=0.508 Sum_probs=187.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 3899999999963 4699999999999999999999999999999999999999999999999999876653 5689
Q ss_pred eEEeccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+||+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++..+.| .+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999998742 122 245677777777766655544 479999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcCCC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 612 (1091)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+...+.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988753 789999999999775 599999999999999999999987643
No 128
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.8e-42 Score=367.12 Aligned_cols=199 Identities=29% Similarity=0.521 Sum_probs=175.2
Q ss_pred EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeE
Q 001371 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1091)
Q Consensus 385 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~ 464 (1091)
+++|++++|++. +++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.+||.++.. ...|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999631 479999999999999999999999999999999999999999999999998864 456778999
Q ss_pred EeccC--ccccccHHHHhccCCCCC--CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 465 VSQEP--VLFTGSIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 465 V~Q~~--~Lf~~TIreNI~~g~~~~--~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
++|+| .+|+.|++||+.++.+.. .++++.++++..++.++..+.| ..||||||||++||||++++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 477899999999864322 2457788888888877665555 37999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHHHHHHH-cCCCeEEEEccCchhhhc-cCeEEEEeCCEEe
Q 001371 541 PRILLLDEATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv 599 (1091)
|+++||||||++||+.+.+.+.+.|+++ .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 357899999999999874 9999999999985
No 129
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-42 Score=367.44 Aligned_cols=203 Identities=27% Similarity=0.495 Sum_probs=178.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++|+|++ .++|+|+||++++| +++|+||+|||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999963 36999999999999 99999999999999999999999999999999999998877 77889999
Q ss_pred EEeccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
|++|++.+|.+ |++||+.+... ..+ ++++.++++..++.++.+ +. ..+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------KK----IGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------Cc----hhhCCHHHHHHHHHHHH
Confidence 99999999986 99999986421 111 345677788877766543 22 24799999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeec
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~G 602 (1091)
++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+. .||+|++|++|+|++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998877799999999999986 59999999999998865
No 130
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.5e-42 Score=367.12 Aligned_cols=210 Identities=31% Similarity=0.481 Sum_probs=188.1
Q ss_pred EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh----HHHhh
Q 001371 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIRK 460 (1091)
Q Consensus 385 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~----~~lr~ 460 (1091)
.+.|++|+|+.+ .++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.+++. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 579999999999999999999999999999999999999999999999998876643 34567
Q ss_pred ceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
.++|++|+|.+|+.|++|||.++.+ .++++..++++.+++.+++..+|.|++|.++....+||||||||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999998754 456677888999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHH--HHHHHc-CCCeEEEEccCchhhhccCeEEEEeCCE
Q 001371 541 PRILLLDEATSALDAESEKVVQE--ALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~--~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~ 597 (1091)
|+++||||||++||+.+...+.+ .++.+. +++|+|++||+++.+..||+|++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999998887776 344333 3689999999999999999999999884
No 131
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=376.47 Aligned_cols=218 Identities=32% Similarity=0.498 Sum_probs=187.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccCCChHH
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQW 457 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~~~~~~ 457 (1091)
.|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|.|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 3889999999963 4699999999999999999999999999999999999974 6999999999998888888
Q ss_pred HhhceeEEeccCccc-cccHHHHhccCCCC----CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 458 IRKKIGLVSQEPVLF-TGSIKDNIAYGKDD----AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 458 lr~~ia~V~Q~~~Lf-~~TIreNI~~g~~~----~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
+|+.|+||+|+|.+| +.|++||+.++... .. ++++.++++..++.+.+. +..+ ....+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLD----APAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhc----CCcccCCHHHH
Confidence 999999999999755 67999999875320 01 245666777776654332 1223 33467999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|+|+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 5999999999999999999998
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 765
No 132
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-42 Score=374.40 Aligned_cols=219 Identities=34% Similarity=0.521 Sum_probs=188.0
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccC--CC
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQ 454 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~--~~ 454 (1091)
+.|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++| ++|+|.+||.++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999963 4699999999999999999999999999999999999863 69999999999875 45
Q ss_pred hHHHhhceeEEeccCccccccHHHHhccCCC--C-----CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--D-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 455 ~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~--~-----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
...+|+.++||+|++.+|+.|++||+.++.. . ..++++.++++.+++.+.+. ........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 5678899999999999999999999987631 1 11344556666666654432 23345567899999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhH
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 606 (1091)
|||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||++..+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998755 99999999999999999999
Q ss_pred HhcC
Q 001371 607 LVED 610 (1091)
Q Consensus 607 L~~~ 610 (1091)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8754
No 133
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=4.6e-42 Score=376.03 Aligned_cols=213 Identities=31% Similarity=0.513 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC---------
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--------- 454 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~--------- 454 (1091)
|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999963 47999999999999999999999999999999999999999999999999987653
Q ss_pred ----hHHHhhceeEEeccCcccc-ccHHHHhccCCC---CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCC
Q 001371 455 ----LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1091)
Q Consensus 455 ----~~~lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~ 522 (1091)
...+|+.++||+|++.+|. .|++||+.++.. ... ++++.++++..++.+.+. .....
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-----------HMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-----------cChhh
Confidence 2467889999999999885 799999987521 112 234455555555554443 34468
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEe
Q 001371 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIV 599 (1091)
Q Consensus 523 LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Iv 599 (1091)
||||||||++||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+. .||+|++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 789999999999985 59999999999999
Q ss_pred eecChhHHhcC
Q 001371 600 EKGTHSKLVED 610 (1091)
Q Consensus 600 e~Gt~~eL~~~ 610 (1091)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999999765
No 134
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-42 Score=372.54 Aligned_cols=210 Identities=25% Similarity=0.417 Sum_probs=179.0
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH---H
Q 001371 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---I 458 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~---l 458 (1091)
-++++||+|+|+++. ..++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997422 147999999999999999999999999999999999999999999999999998887654 3
Q ss_pred h-hceeEEeccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 459 R-KKIGLVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 459 r-~~ia~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
| +.++|++|++.+|.. |++||+.++.. ..+ ++++.++++..++.+. ......+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 3 679999999999875 99999987421 112 2345556666555433 334456899999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhccCeEEEEeCCEEeeecC
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 603 (1091)
++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998874 4789999999999999999999999999998775
No 135
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-42 Score=377.77 Aligned_cols=219 Identities=30% Similarity=0.471 Sum_probs=190.2
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCcEEEECCccccC--CC
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-----~~~G~I~idg~~i~~--~~ 454 (1091)
..|+++|++|+|+ ++++|+|+||+|++||+++|+||+|||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 3699999999996 3579999999999999999999999999999999999997 589999999999864 34
Q ss_pred hHHHhhceeEEeccCccccccHHHHhccCCCC--C-C----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 455 ~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~--~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
...+|+.|+||+|++.+|..|++|||.++... . + ++++.++++..++.+++. +..+.....|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 56778899999999999999999999876321 1 1 234566677777655442 33456677899999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhH
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~e 606 (1091)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877899999999999875 599999999999999999999
Q ss_pred HhcC
Q 001371 607 LVED 610 (1091)
Q Consensus 607 L~~~ 610 (1091)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 9764
No 136
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-42 Score=374.43 Aligned_cols=216 Identities=33% Similarity=0.531 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
++++|++++|++. .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999731 46999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEeccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
|++|+|.+|. .|++||+.++.. ..+ ++++.++++..++.+ +........+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999996 699999987531 112 223344444443321 013345567899999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcC
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999988753 789999999999765 5999999999999999999998754
No 137
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=5.4e-42 Score=386.04 Aligned_cols=225 Identities=27% Similarity=0.408 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCC----------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccC
Q 001371 383 DIELRDVYFSYPARP----------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~----------~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~ 452 (1091)
-|+++|++++|+.+. ..++++|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999998
Q ss_pred CChHH---HhhceeEEeccC--ccc-cccHHHHhccCC----CCCCHH----HHHHHHHHcccHHHHhhCCCCccccccc
Q 001371 453 FQLQW---IRKKIGLVSQEP--VLF-TGSIKDNIAYGK----DDATTE----EIRVATELANAAKFIDKLPQGIDTLVGE 518 (1091)
Q Consensus 453 ~~~~~---lr~~ia~V~Q~~--~Lf-~~TIreNI~~g~----~~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge 518 (1091)
++.+. +|++|+||+|+| .++ ..||.|||.++. +..+.+ ++.++++.+++.+. ....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------HhcC
Confidence 87544 678999999999 466 479999997531 123433 34455555555221 1233
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeC
Q 001371 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1091)
Q Consensus 519 ~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~ 595 (1091)
...+||||||||++|||||+.+|++||+|||||+||..+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4468999999999999999999999999999999999999999999988754 7899999999999975 999999999
Q ss_pred CEEeeecChhHHhcCCCchhHH
Q 001371 596 GKIVEKGTHSKLVEDPEGAYSQ 617 (1091)
Q Consensus 596 G~Ive~Gt~~eL~~~~~~~y~~ 617 (1091)
|+|+|.|+.+++.+++...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999998765455654
No 138
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-42 Score=382.21 Aligned_cols=216 Identities=26% Similarity=0.454 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccC---------
Q 001371 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--------- 452 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~--------- 452 (1091)
|+++|++|+|++.. ..++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997431 1369999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CChHHHhhceeEEeccC--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcccH-HHHhhC
Q 001371 453 ---------------FQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKD--DATT----EEIRVATELANAA-KFIDKL 508 (1091)
Q Consensus 453 ---------------~~~~~lr~~ia~V~Q~~--~Lf~~TIreNI~~g~~--~~~~----~~i~~a~~~a~l~-~~i~~l 508 (1091)
.+...+|++|+||+|+| .+|..|++|||.|+.. ..+. +++.++++.+++. ++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--- 159 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL--- 159 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh---
Confidence 13467889999999986 6888999999998742 1233 3455666666653 332
Q ss_pred CCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhh-hc
Q 001371 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV-RN 586 (1091)
Q Consensus 509 p~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i-~~ 586 (1091)
.....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+ ..
T Consensus 160 --------~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 160 --------QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred --------hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 23446899999999999999999999999999999999999999999998764 479999999999976 56
Q ss_pred cCeEEEEeCCEEeeecChhHHhcC
Q 001371 587 ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 587 aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||+|++|++|+|++.|+.+++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998764
No 139
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-42 Score=376.17 Aligned_cols=218 Identities=34% Similarity=0.499 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc---CCC--CCcEEEECCccccCC--Ch
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF---YDP--QAGEVLIDGINLKEF--QL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~---~~~--~~G~I~idg~~i~~~--~~ 455 (1091)
.|+++|+++.|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4889999999963 4699999999999999999999999999999999997 454 589999999998764 34
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCCC--C-----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~--~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..+|++++||||++.+|+.|++|||.++... . .++++.++++.+++.+++. +.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 6778899999999999999999999875311 1 1234556666666544432 334456778999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|+|+||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999985 5999999999999999999999
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
.++
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 765
No 140
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-42 Score=360.96 Aligned_cols=216 Identities=33% Similarity=0.540 Sum_probs=188.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCc---cccCCChHHHh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQLQWIR 459 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~---~i~~~~~~~lr 459 (1091)
.|.++|++..|+. .++++|||++|+.||.+|+.||||||||||+++|.|+..|++|.|.+||. |.++.. .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 4788999999963 57999999999999999999999999999999999999999999999999 666533 334
Q ss_pred hceeEEeccCcccc-ccHHHHhccCC------C--CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 460 KKIGLVSQEPVLFT-GSIKDNIAYGK------D--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~-~TIreNI~~g~------~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
++||+|+|+.-||. .||+|||.||- | .....++.+.++.++|...=++-| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 67999999999885 89999999996 2 123456777788988887766666 5899999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchh-hhccCeEEEEeCCEEeeecChhHH
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLST-VRNADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~-i~~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
+||||||..+|++|+||||++|||++..+.++.-|+++.. +.|+++|||.... .+.||+|+||++|+|...|+++|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999888877642 6899999999876 567999999999999999999999
Q ss_pred hcCCCch
Q 001371 608 VEDPEGA 614 (1091)
Q Consensus 608 ~~~~~~~ 614 (1091)
...++..
T Consensus 226 ~~~P~s~ 232 (345)
T COG1118 226 YDHPASR 232 (345)
T ss_pred hcCCCcc
Confidence 8775543
No 141
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-42 Score=376.51 Aligned_cols=218 Identities=32% Similarity=0.479 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccCC--Ch
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~~--~~ 455 (1091)
.|+++|++++|++ +++|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5899999999963 4699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCC--CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~--~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
..+|+.++||+|++.+|+.|++||+.++.. ..+. +++.++++.+++.+++ +.........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHH
Confidence 567889999999999999999999987531 1222 2345566666654322 12233455689999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHh
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
|++|||||+.+|+|+||||||++||+.+...+.+.|+++.+++|+|+|||++..+.. ||+|++|++|+|++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999998854 9999999999999999999997
Q ss_pred cC
Q 001371 609 ED 610 (1091)
Q Consensus 609 ~~ 610 (1091)
..
T Consensus 242 ~~ 243 (258)
T PRK14268 242 HN 243 (258)
T ss_pred cC
Confidence 65
No 142
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.4e-42 Score=370.17 Aligned_cols=204 Identities=35% Similarity=0.488 Sum_probs=173.5
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH----H
Q 001371 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW----I 458 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~----l 458 (1091)
|+++|++++|++.. .+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 147999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hhceeEEeccCccccc-cHHHHhccCCCC--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 459 r~~ia~V~Q~~~Lf~~-TIreNI~~g~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
|++++||+|++.+|.+ |++||+.++... .+ ++++.++++..++.+.. .....+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHHHHHHH
Confidence 6789999999999986 999999886321 11 23455555555554433 334468999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhccCeEEEEeCCEE
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~I 598 (1091)
+||||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998764 7899999999999889999999999974
No 143
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-42 Score=375.91 Aligned_cols=218 Identities=29% Similarity=0.444 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCcEEEECCccccCC--Ch
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKEF--QL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~--~---~~G~I~idg~~i~~~--~~ 455 (1091)
-++++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++ | ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 469999999999999999999999999999999999954 6 499999999998643 34
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCC---CC----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD---DA----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~---~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..+|+.++||||++.+|+.|++||+.++.. .. .++++.++++.+++.+.+. +.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 567889999999999999999999987521 11 1234455666666544332 234556678999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877799999999999875 5999999999999999999999
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
.+.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 765
No 144
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-42 Score=377.45 Aligned_cols=214 Identities=33% Similarity=0.575 Sum_probs=186.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC-hHHHhhce
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRKKI 462 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~-~~~lr~~i 462 (1091)
|+++|++++|++ ++++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999963 346999999999999999999999999999999999999999999999999998775 46778899
Q ss_pred eEEeccCc--cccccHHHHhccCCCC--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 463 GLVSQEPV--LFTGSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 463 a~V~Q~~~--Lf~~TIreNI~~g~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
+||+|+|. +++.|++|||.++... .+ ++++.++++..++.++... ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHH
Confidence 99999985 5778999999886421 22 2345566666666555433 3458999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||++++|+|+||||||++||+.+...+.+.|+++. +++|+|++||++..+..||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998765 47899999999999989999999999999999999998654
No 145
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-42 Score=376.95 Aligned_cols=219 Identities=32% Similarity=0.527 Sum_probs=186.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCcEEEECCccccCCC--hH
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEFQ--LQ 456 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-----~~~G~I~idg~~i~~~~--~~ 456 (1091)
-+++|++|+|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++ |++|+|.++|.++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 368999999963 479999999999999999999999999999999999986 47999999999887653 34
Q ss_pred HHhhceeEEeccCccccccHHHHhccCCC--CC------CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DA------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 457 ~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~--~~------~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
.+|++++||+|++.+|++|++|||.++.. +. .++++.++++..++.+++ .+.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 67889999999999999999999987521 11 123455666666654432 1234456678999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|+|+||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+.. ||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999864 999999999999999999999
Q ss_pred hcCCC
Q 001371 608 VEDPE 612 (1091)
Q Consensus 608 ~~~~~ 612 (1091)
.+.+.
T Consensus 236 ~~~~~ 240 (251)
T PRK14244 236 FKNPQ 240 (251)
T ss_pred hcCCC
Confidence 86533
No 146
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5.8e-42 Score=367.26 Aligned_cols=207 Identities=25% Similarity=0.494 Sum_probs=176.5
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
|+++|++++|+++.. .++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974211 269999999999999999999999999999999999999999999999999875 456778899
Q ss_pred eEEeccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+|++|++.+|.. |++||+.+... ..+ ++++.++++..++.+.+ .....+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999976421 112 23455566666554443 3455689999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeec
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~G 602 (1091)
|++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998874 4789999999999876 49999999999998765
No 147
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-42 Score=377.23 Aligned_cols=218 Identities=30% Similarity=0.460 Sum_probs=185.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-----~~~G~I~idg~~i~~--~~~ 455 (1091)
-|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4899999999963 469999999999999999999999999999999999865 789999999999865 344
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCCC--C-----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~--~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..+|++++|++|++.+|++|++||+.++... . .++.+.++++..++.+.+. ........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 5678899999999999999999999875311 1 1233455566655532221 223455678999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999875 5999999999999999999998
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
..+
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 765
No 148
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=6.5e-42 Score=377.65 Aligned_cols=223 Identities=28% Similarity=0.459 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChH---HHh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~---~lr 459 (1091)
-|+++|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998876643 457
Q ss_pred hceeEEeccCccccc-cHHHHhccCCC---CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 460 KKIGLVSQEPVLFTG-SIKDNIAYGKD---DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~-TIreNI~~g~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
++++|++|++.+|.+ |++||+.++.. ..+. +++.++++..++.+... ....+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----------LMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 789999999999986 99999986421 1222 23444555555544332 23357999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHh
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
+||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988753 7899999999998865 9999999999999999999998
Q ss_pred cCCCchhHHHH
Q 001371 609 EDPEGAYSQLI 619 (1091)
Q Consensus 609 ~~~~~~y~~l~ 619 (1091)
+.....+..++
T Consensus 233 ~~~~~~~~~~~ 243 (269)
T PRK11831 233 ANPDPRVRQFL 243 (269)
T ss_pred cCCcHHHHHHH
Confidence 65333344443
No 149
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-42 Score=374.41 Aligned_cols=218 Identities=28% Similarity=0.469 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccCC--Ch
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~~--~~ 455 (1091)
-|+++|++|+|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+.+| ++|+|.+||+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 4699999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCCC--C-C----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~--~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
...|+.++|++|++.+|+.|++|||.++... . + ++++.++++..++.+++ .+..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHH
Confidence 6778899999999999999999999986321 1 1 22345555555554333 3445667789999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||++..+. .||+|++|++|++++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999999999998877799999999999986 5999999999999999999998
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
..+
T Consensus 236 ~~~ 238 (253)
T PRK14261 236 FEN 238 (253)
T ss_pred HhC
Confidence 765
No 150
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=5.5e-42 Score=364.50 Aligned_cols=203 Identities=26% Similarity=0.462 Sum_probs=179.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ .++|+|+||++++|+.++|+||+|||||||+++|.|+++|++|+|.++|.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999963 4799999999999999999999999999999999999999999999999988765 56788999
Q ss_pred EEeccCccc-cccHHHHhccCCC--CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 464 LVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 464 ~V~Q~~~Lf-~~TIreNI~~g~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
||+|++.+| +.|++||+.++.. ..+++++.++++..++.+.+.+ ....||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 999999888 5799999987531 2356678888888888766543 3457999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeec
Q 001371 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 602 (1091)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998765 47899999999998864 9999999999999865
No 151
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-42 Score=377.80 Aligned_cols=214 Identities=31% Similarity=0.549 Sum_probs=189.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
++++|++++|++ ..++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 789999999963 236999999999999999999999999999999999999999999999999998877788899999
Q ss_pred EEeccC--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 464 LVSQEP--VLFTGSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 464 ~V~Q~~--~Lf~~TIreNI~~g~~--~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
||+|+| .+|+.|++||+.++.. ..+. +++.++++..++.+++.+.| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 4788999999987532 2232 34677788888877665544 479999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+++|+...
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999988753 78999999999998 46999999999999999999999764
No 152
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-42 Score=376.88 Aligned_cols=213 Identities=29% Similarity=0.509 Sum_probs=189.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999888888889999
Q ss_pred eEEeccCccccc-cHHHHhccCCC----------CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKD----------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~----------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
+|++|++.++.+ |++||+.++.. ...++++.++++.+++.+++.+.| .+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 999999877654 99999987531 112446778888888877665544 37999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHh
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
+||||++.+|+||||||||++||+.+.+.+.+.|.++.+ ++|+|++||++..+. .||+|++|++|+|++.|+.+|+.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999988753 789999999999985 59999999999999999999886
Q ss_pred c
Q 001371 609 E 609 (1091)
Q Consensus 609 ~ 609 (1091)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
No 153
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=376.11 Aligned_cols=216 Identities=28% Similarity=0.493 Sum_probs=187.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++. .+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999742 24699999999999999999999999999999999999999999999999999888888899999
Q ss_pred eEEeccCc--cccccHHHHhccCCCC--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 463 GLVSQEPV--LFTGSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 463 a~V~Q~~~--Lf~~TIreNI~~g~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
+||+|+|. ++..|+++|+.++... .+ ++++.++++..++.++.. ....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHH
Confidence 99999995 4556899999886321 22 234556666666654433 23468999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+..||+|++|++|+|++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999988753 7899999999999888999999999999999999998764
No 154
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=6.5e-42 Score=354.04 Aligned_cols=178 Identities=34% Similarity=0.670 Sum_probs=166.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++|+|+++ +.++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999743 24799999999999999999999999999999999999999999999999988776 667888999
Q ss_pred EEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCE
Q 001371 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1091)
Q Consensus 464 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~I 543 (1091)
||+|++++|+.|++||| ..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 468999999999999999999999
Q ss_pred EEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeec
Q 001371 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 544 liLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~G 602 (1091)
+||||||++||+.+.+.+.+.|+++.+++|+|++||++..+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999999999999999998765
No 155
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-42 Score=391.35 Aligned_cols=205 Identities=34% Similarity=0.560 Sum_probs=179.4
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH----hhceeEEeccCcccc-c
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RKKIGLVSQEPVLFT-G 474 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l----r~~ia~V~Q~~~Lf~-~ 474 (1091)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++...+ |++++||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 47999999999999999999999999999999999999999999999999998877654 358999999999996 5
Q ss_pred cHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeC
Q 001371 475 SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548 (1091)
Q Consensus 475 TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE 548 (1091)
|++|||.++.. ..+ ++++.++++..++.++..+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999997631 111 345667788888877666555 4799999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcCCCchh
Q 001371 549 ATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1091)
Q Consensus 549 ~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y 615 (1091)
|||+||+.+.+.+++.|.++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++..++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999998864 4789999999999875 599999999999999999999987644434
No 156
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7.9e-42 Score=370.36 Aligned_cols=216 Identities=29% Similarity=0.539 Sum_probs=182.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++.+.+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 46999999999999999999999999999999999999999999999999998776544 45899
Q ss_pred EEeccCcc-ccccHHHHhccCCC--CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 464 LVSQEPVL-FTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 464 ~V~Q~~~L-f~~TIreNI~~g~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
|++|++.+ +..|++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 56899999987532 122222111 112333333 444445566678999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 541 PRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|+|+||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999998875 47899999999999988999999999999999999998764
No 157
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=375.69 Aligned_cols=218 Identities=27% Similarity=0.460 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-----~~~G~I~idg~~i~~--~~~ 455 (1091)
-++++|++|+|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 4899999999963 469999999999999999999999999999999999987 699999999999853 455
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCC--CCCH-----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATT-----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~--~~~~-----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..+|++++|++|++.+|..|++|||.++.. ..++ +++.++++..++.+ ++.......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 678889999999999999999999987531 1221 12334444443322 223344567788999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999976 4999999999999999999999
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
...
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 765
No 158
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-41 Score=374.14 Aligned_cols=219 Identities=35% Similarity=0.490 Sum_probs=187.6
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCcEEEECCccccC--CC
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-----~~~G~I~idg~~i~~--~~ 454 (1091)
..|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999963 469999999999999999999999999999999999987 689999999999863 56
Q ss_pred hHHHhhceeEEeccCccccccHHHHhccCCCC--CC---HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 455 ~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~--~~---~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
...+|++++||+|++.+|..|++||+.++... .. ++++.++++.+++.+.+ ++.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 67788999999999999999999999976421 11 34455566666554322 23344556789999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeC-----------CE
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHR-----------GK 597 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~-----------G~ 597 (1091)
|++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||++..+. .||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 99999999999999999999999999999999999998877889999999999875 5999999996 67
Q ss_pred EeeecChhHHhcC
Q 001371 598 IVEKGTHSKLVED 610 (1091)
Q Consensus 598 Ive~Gt~~eL~~~ 610 (1091)
|++.|+.+++...
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999764
No 159
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=7.6e-42 Score=367.16 Aligned_cols=205 Identities=29% Similarity=0.488 Sum_probs=173.6
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH---Hh
Q 001371 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~---lr 459 (1091)
|+++||+++|++.. ..++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 246999999999999999999999999999999999999999999999999998877644 34
Q ss_pred -hceeEEeccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 460 -KKIGLVSQEPVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 460 -~~ia~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
+.++||+|++.+|. .|++||+.++.. ..+ ++++.++++..++++.. ......||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-----------NHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHH
Confidence 68999999999986 699999987421 112 22344555555554433 334468999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhccCeEEEEeCCEEe
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Iv 599 (1091)
+||||++++|+||||||||++||+++.+.+.+.|+++. .++|+|+|||++..+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998875 378999999999999999999999999986
No 160
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-42 Score=366.51 Aligned_cols=209 Identities=25% Similarity=0.454 Sum_probs=181.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ +++|+|+||++++||++||+||+|||||||+++|.|+++|++|+|.++|.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999963 4699999999999999999999999999999999999999999999999988753 356788999
Q ss_pred EEeccCccccc-cHHHHhccCCC--CC----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGKD--DA----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~~--~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
|++|++.++.. |++||+.++.. .. .++++.++++..++.+...+.| .+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999998875 99999986421 11 2345677777777766554332 4799999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHH
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
++.+|+++||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988653 6899999999998865 999999999999999998775
No 161
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=371.82 Aligned_cols=218 Identities=31% Similarity=0.510 Sum_probs=187.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~-----~G~I~idg~~i~~--~~~ 455 (1091)
.|+++|++|+|++ +++|+|+||+|++|++++|+||+|||||||+++|.|+++|+ +|+|.++|.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 46999999999999999999999999999999999999997 6999999999864 345
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCCC--C-C----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~--~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..+|+.++||+|++.+|+.|++|||.++... . . ++++.++++..++.+.+. +.....+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 6788999999999999999999999876321 1 1 233444555555544332 335567789999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999887678999999999999876 799999999999999999998
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 654
No 162
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=370.96 Aligned_cols=214 Identities=28% Similarity=0.465 Sum_probs=180.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcccc------CCChH
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK------EFQLQ 456 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~------~~~~~ 456 (1091)
.|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++. ..+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 46999999999999999999999999999999999999999999999999873 22346
Q ss_pred HHhhceeEEeccCccccc-cHHHHhccCC---CCCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 457 WIRKKIGLVSQEPVLFTG-SIKDNIAYGK---DDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 457 ~lr~~ia~V~Q~~~Lf~~-TIreNI~~g~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
.+|++++|+||++.+|.+ |++|||.++. ...+ .+++.++++..++.+++ .....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYA-----------DRFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHH
Confidence 778899999999999975 9999997431 0112 22344444554444443 334468999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 606 (1091)
||++||||++++|+|+||||||++||+.+...+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998875 47999999999999865 99999999999999999998
Q ss_pred HhcC
Q 001371 607 LVED 610 (1091)
Q Consensus 607 L~~~ 610 (1091)
+.+.
T Consensus 228 ~~~~ 231 (242)
T PRK11124 228 FTQP 231 (242)
T ss_pred hcCc
Confidence 7543
No 163
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.2e-41 Score=374.84 Aligned_cols=225 Identities=29% Similarity=0.429 Sum_probs=185.3
Q ss_pred EEEEeEEEECCCC------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH
Q 001371 384 IELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1091)
Q Consensus 384 I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~ 457 (1091)
|+++|++|+|++. .++++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.+||.++..++.+.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1357999999999999999999999999999999999999999999999999998876543
Q ss_pred ---HhhceeEEeccCc--cc-cccHHHHhccCCC---CC----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCC
Q 001371 458 ---IRKKIGLVSQEPV--LF-TGSIKDNIAYGKD---DA----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1091)
Q Consensus 458 ---lr~~ia~V~Q~~~--Lf-~~TIreNI~~g~~---~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 524 (1091)
+|+.|+||+|+|. ++ ..|++|||.++.. .. .++++.++++..++.+ .........||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 6788999999983 44 4799999965321 11 1233444555544421 22344567899
Q ss_pred hHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeee
Q 001371 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEK 601 (1091)
Q Consensus 525 GGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~ 601 (1091)
||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+. .||+|++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999988753 789999999999987 5999999999999999
Q ss_pred cChhHHhcCCCchhHHH
Q 001371 602 GTHSKLVEDPEGAYSQL 618 (1091)
Q Consensus 602 Gt~~eL~~~~~~~y~~l 618 (1091)
|+++++....+..++.+
T Consensus 233 g~~~~~~~~~~~~~~~~ 249 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNL 249 (265)
T ss_pred CCHHHHcCCCCHHHHHH
Confidence 99999987423344333
No 164
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-41 Score=373.24 Aligned_cols=218 Identities=31% Similarity=0.444 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-----~~~G~I~idg~~i~~--~~~ 455 (1091)
-|+++||+++|++ .++|+|+||+|++||+++|+||+|||||||+++|+|++. |++|+|.+||.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 469999999999999999999999999999999999986 479999999998853 456
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCCC--C---CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A---TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~--~---~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
..+|++++||+|++.+|+.|++|||.++... . .++++.++++.+++.+++.. .......+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 6788899999999999999999999876421 1 13445667777777665532 2345667899999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEe---------CCEEee
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIH---------RGKIVE 600 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~---------~G~Ive 600 (1091)
++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999998877789999999999875 599999998 899999
Q ss_pred ecChhHHhcC
Q 001371 601 KGTHSKLVED 610 (1091)
Q Consensus 601 ~Gt~~eL~~~ 610 (1091)
.|+++|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999765
No 165
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=371.96 Aligned_cols=219 Identities=29% Similarity=0.466 Sum_probs=187.5
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCcEEEECCccccCC--C
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKEF--Q 454 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~--~---~~G~I~idg~~i~~~--~ 454 (1091)
+.|+++|++++|++ +++|+|+||+|++||.++|+||+|||||||+++|.|+++ | ++|+|.+||.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46899999999963 469999999999999999999999999999999999986 4 689999999998653 4
Q ss_pred hHHHhhceeEEeccCcccc-ccHHHHhccCCCC---CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChH
Q 001371 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD---AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1091)
Q Consensus 455 ~~~lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~~---~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 526 (1091)
...+|+.++||+|++.+|. .|++|||.++... .+ ++++.++++..++.+++.. .......+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 4577889999999999998 5999999874210 11 2345666777776554432 223456789999
Q ss_pred HHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChh
Q 001371 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 527 QkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~ 605 (1091)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877899999999999985 59999999999999999999
Q ss_pred HHhcC
Q 001371 606 KLVED 610 (1091)
Q Consensus 606 eL~~~ 610 (1091)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 98765
No 166
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=372.78 Aligned_cols=218 Identities=33% Similarity=0.506 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccCC--Ch
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~~--~~ 455 (1091)
-|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 3899999999963 4799999999999999999999999999999999999984 899999999988753 34
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCCC---C----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---A----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~---~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..+|+.++|++|++.+|..|++||+.++... . .++++.++++..++.+.+. +.......+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 5678899999999999999999999875311 1 1233556666666654432 234556778999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|+|+||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999998877899999999999765 5999999999999999999998
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14262 233 VER 235 (250)
T ss_pred HhC
Confidence 764
No 167
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-41 Score=370.37 Aligned_cols=213 Identities=31% Similarity=0.524 Sum_probs=182.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCC--ChHHHhhc
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF--QLQWIRKK 461 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~--~~~~lr~~ 461 (1091)
|+++|++++|++ +++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 4699999999999999999999999999999999999999999999999998764 34577889
Q ss_pred eeEEeccCcccc-ccHHHHhccCCC---CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 462 IGLVSQEPVLFT-GSIKDNIAYGKD---DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 462 ia~V~Q~~~Lf~-~TIreNI~~g~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
++|++|++.+|. .|++||+.++.. ..+. +++.++++..++.+ ........||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-----------RAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-----------HHhcChhhcCHHHHHHHHH
Confidence 999999999886 699999987531 1222 23344444444433 3334456899999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|||++++|+++||||||++||+++...+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999998865 47999999999999864 999999999999999999998754
No 168
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=7e-42 Score=365.22 Aligned_cols=203 Identities=32% Similarity=0.572 Sum_probs=174.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999998766543 46899
Q ss_pred EEeccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
|++|++.+|. .|++||+.++.. ..+ ++++.++++..++.+.+.+. ..+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRK-----------PKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999985 699999987521 112 23455666666666554443 35799999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeec
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 602 (1091)
++++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||++..+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999998875 37899999999998765 9999999999999876
No 169
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.2e-41 Score=368.58 Aligned_cols=216 Identities=25% Similarity=0.467 Sum_probs=181.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH-hhce
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l-r~~i 462 (1091)
|+++|++++|++ +++|+|+||++++|++++|+||+|||||||+++|.|+++|++|+|.++|.++...+.+.+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 469999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred eEEeccCccccc-cHHHHhccCCCC--CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~~--~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
+|++|++.+|.+ |++||+.++.+. ...++..+ .+++.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 999999875321 12222111 112333333 44444555667899999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhc
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998765 4789999999997665 599999999999999999998864
No 170
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-42 Score=367.78 Aligned_cols=206 Identities=36% Similarity=0.526 Sum_probs=176.6
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
|+++|++++|++.. .+++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996411 1479999999999999999999999999999999999999999999999998863 46789
Q ss_pred eEEeccCcccc-ccHHHHhccCCC--CC----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKD--DA----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~--~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+||+|++.+|. .|++||+.++.. .. .++++.++++..++.+.+.+.| .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999988 699999987531 11 2345666777777766555444 479999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEe--CCEEeeecChh
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIH--RGKIVEKGTHS 605 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~--~G~Ive~Gt~~ 605 (1091)
|++++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|+ +|+|++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999998864 3789999999999775 599999999 79999988753
No 171
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-41 Score=370.67 Aligned_cols=212 Identities=26% Similarity=0.470 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH-hhce
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l-r~~i 462 (1091)
|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++...+.+.. |..+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 469999999999999999999999999999999999999999999999999988776644 5579
Q ss_pred eEEeccCccccc-cHHHHhccCCCCC--------------CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKDDA--------------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~~~--------------~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
+|++|++.+|.+ |++||+.++.... .++++.++++.. |++.........|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-----------GLADEADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHH
Confidence 999999999986 9999998763210 122333333333 33334445567899999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhH
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 606 (1091)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999875 99999999999999999999
Q ss_pred Hhc
Q 001371 607 LVE 609 (1091)
Q Consensus 607 L~~ 609 (1091)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 864
No 172
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=388.90 Aligned_cols=217 Identities=33% Similarity=0.574 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++. .|+.|
T Consensus 19 ~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred eEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999963 469999999999999999999999999999999999999999999999999987664 47789
Q ss_pred eEEeccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+||+|++.||.. |++|||.|+.. ..+ .+++.++++..++.++.++.| .+||||||||+||||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999974 99999998742 122 235666777777766655544 479999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcCCC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 612 (1091)
||+++|++||||||||+||+.+.+.+.+.|+++. .+.|+|+|||+++.+ .-||+|++|++|+|++.|+++|+..++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999988887764 368999999999986 5699999999999999999999987754
Q ss_pred chh
Q 001371 613 GAY 615 (1091)
Q Consensus 613 ~~y 615 (1091)
..|
T Consensus 243 ~~~ 245 (377)
T PRK11607 243 TRY 245 (377)
T ss_pred cHH
Confidence 433
No 173
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.8e-41 Score=372.19 Aligned_cols=216 Identities=28% Similarity=0.476 Sum_probs=184.0
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCC--------
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-------- 453 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~-------- 453 (1091)
+.|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999963 4699999999999999999999999999999999999999999999999988642
Q ss_pred -----ChHHHhhceeEEeccCcccc-ccHHHHhccCCC---CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCC
Q 001371 454 -----QLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520 (1091)
Q Consensus 454 -----~~~~lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G 520 (1091)
....+|+.++||||++.+|. .|++||+.++.. ... ++++.++++..++.+.+ .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 13567889999999999997 499999986421 112 23444555555544332 13455
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEE
Q 001371 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~I 598 (1091)
..||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999998875 47999999999999886 999999999999
Q ss_pred eeecChhHHhcC
Q 001371 599 VEKGTHSKLVED 610 (1091)
Q Consensus 599 ve~Gt~~eL~~~ 610 (1091)
++.|+++++.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999998754
No 174
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=371.07 Aligned_cols=221 Identities=30% Similarity=0.526 Sum_probs=190.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-----~~~G~I~idg~~i~~--~~~ 455 (1091)
.++++||+++|++ +++|+|+||+|++||+++|+||+|||||||+++|+|+.+ |++|+|.+||.++.+ .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 469999999999999999999999999999999999864 489999999999875 345
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCC--C-CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--D-AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~--~-~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..+|++++||||++.+|+.|++|||.++.. . .+ ++++.++++.+++.+++..+ ....+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 678899999999999999999999987531 1 12 24466778888887665432 3445678999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|+|+||||||++||+.+.+.+.+.|+++.+++|+|++||++..+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 899999999999999999999
Q ss_pred hcCCCc
Q 001371 608 VEDPEG 613 (1091)
Q Consensus 608 ~~~~~~ 613 (1091)
...+.+
T Consensus 233 ~~~~~~ 238 (250)
T PRK14266 233 FINPKD 238 (250)
T ss_pred HhCCCC
Confidence 765333
No 175
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=9.8e-42 Score=366.43 Aligned_cols=210 Identities=26% Similarity=0.442 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++..++...+|+.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEeccCccccccHHHHhccCC---CC-CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 463 GLVSQEPVLFTGSIKDNIAYGK---DD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 463 a~V~Q~~~Lf~~TIreNI~~g~---~~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
+|++|++.+|+.|++||+.++. +. ..++++.++++..++.+ +.......+||||||||++||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999998642 11 12333444555444421 2334556789999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhccCeEEEE-eCCEEeeecChh
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVI-HRGKIVEKGTHS 605 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl-~~G~Ive~Gt~~ 605 (1091)
++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.++.||+|++| +++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999988753 78999999999999999999999 477778889995
No 176
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=372.44 Aligned_cols=212 Identities=25% Similarity=0.490 Sum_probs=187.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|.++.+++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 47999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEeccCccccc-cHHHHhccCCC----------CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGKD----------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~~----------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRia 532 (1091)
|++|++.+|.+ |++||+.++.. ...++++.++++..++.+..++ ....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHH
Confidence 99999998876 99999998631 1123456667777777654433 34679999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhc
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+. .||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998864 4789999999999876 599999999999999999999864
No 177
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=370.43 Aligned_cols=218 Identities=32% Similarity=0.474 Sum_probs=187.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccCC--Ch
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~~--~~ 455 (1091)
-|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4889999999963 4699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCCC--C-C----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~--~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..+|+.++|+||++.+|+.|++||+.++... . + ++++.++++.+++.+.+.. ........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 5678899999999999999999999876311 1 1 2345667777776544332 23445678999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|+|+|||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999998765 999999999999999999998
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 754
No 178
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=369.78 Aligned_cols=218 Identities=30% Similarity=0.487 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCcccc-CCChH
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK-EFQLQ 456 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~-~~~~~ 456 (1091)
.++++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999963 4699999999999999999999999999999999999986 5999999999985 45667
Q ss_pred HHhhceeEEeccCccccccHHHHhccCCCC--CC-----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 457 ~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~--~~-----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
.+|+.++|++|++.+|..|++|||.++... .. ++++.++++..++.+++. +........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 888999999999999999999999876321 11 233455666666654432 3344556789999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHh
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
|++||||++.+|+|+||||||++||+.+.+.+.+.|+++.+++|+|++||++..+.. ||+|++|++|+|++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999876 9999999999999999999886
Q ss_pred cC
Q 001371 609 ED 610 (1091)
Q Consensus 609 ~~ 610 (1091)
.+
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
No 179
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=373.20 Aligned_cols=218 Identities=27% Similarity=0.481 Sum_probs=187.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccCCC-hH
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQ-LQ 456 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~~~-~~ 456 (1091)
.++++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 4799999999999999999999999999999999999986 6999999999988763 45
Q ss_pred HHhhceeEEeccCccccccHHHHhccCCC---CCCHHHHH----HHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKD---DATTEEIR----VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 457 ~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~---~~~~~~i~----~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
.+|++++|++|++.+|+.|++|||.++.. ..+++++. ++++..++.+ .+++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD-------AVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc-------hhhhHhhCCcccCCHHHHH
Confidence 67889999999999999999999987632 13444432 3334443332 2234455667899999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHh
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
|++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+.. ||+|++|++|+|++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988777899999999998764 9999999999999999999997
Q ss_pred cC
Q 001371 609 ED 610 (1091)
Q Consensus 609 ~~ 610 (1091)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 65
No 180
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7.8e-42 Score=369.26 Aligned_cols=211 Identities=27% Similarity=0.483 Sum_probs=179.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH-Hhhce
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKI 462 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~-lr~~i 462 (1091)
|+++||+++|++ .++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999963 47999999999999999999999999999999999999999999999999998887654 46789
Q ss_pred eEEeccCccccc-cHHHHhccCCCCCC---HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKDDAT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~~~~---~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
+|++|++.+|.. |++||+.++..... .+...++++..+ +++........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 99999987643221 112223333221 1222334455689999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHH
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999988754 7899999999999885 999999999999999999987
No 181
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-41 Score=369.35 Aligned_cols=204 Identities=31% Similarity=0.432 Sum_probs=179.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++. .+|+++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5899999999963 46999999999999999999999999999999999999999999999998753 467889
Q ss_pred eEEeccCcccc-ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~ 541 (1091)
+|++|++.+|. .|++||+.++.....++++.++++..++.+...+ ...+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 6999999986432235567777777777654433 34689999999999999999999
Q ss_pred CEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChh
Q 001371 542 RILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 542 ~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~ 605 (1091)
+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998864 3789999999999875 59999999999999988865
No 182
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1e-41 Score=364.24 Aligned_cols=201 Identities=31% Similarity=0.514 Sum_probs=176.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChH---HHhh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~---~lr~ 460 (1091)
|+++|++++|++ +.++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 34799999999999999999999999999999999999999999999999999887643 4678
Q ss_pred ceeEEeccCcccc-ccHHHHhccCCC------CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 461 KIGLVSQEPVLFT-GSIKDNIAYGKD------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~-~TIreNI~~g~~------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
.++|++|+|.+|. .|++||+.++.. ...+++++++++..++.+++.+.| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 699999987521 122456777888888776655544 4799999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCE
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~ 597 (1091)
|||++++|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998864 47999999999999875 99999999985
No 183
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.1e-41 Score=368.43 Aligned_cols=213 Identities=32% Similarity=0.533 Sum_probs=180.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC--------h
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--------L 455 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~--------~ 455 (1091)
++++|++++|++ .++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 789999999963 46999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhhceeEEeccCcccc-ccHHHHhccCC---CCCCHH----HHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 456 QWIRKKIGLVSQEPVLFT-GSIKDNIAYGK---DDATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~-~TIreNI~~g~---~~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
..+|++++||||++.+|. .|++||+.++. .....+ ++.++++..+ ++........+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVG-----------LAGKETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CcchhhCChhhCChHH
Confidence 567889999999999886 69999998642 112222 2333333333 3333344567899999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChh
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~ 605 (1091)
|||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998875 47899999999999865 9999999999999999999
Q ss_pred HHhcC
Q 001371 606 KLVED 610 (1091)
Q Consensus 606 eL~~~ 610 (1091)
++.+.
T Consensus 230 ~~~~~ 234 (250)
T PRK11264 230 ALFAD 234 (250)
T ss_pred HHhcC
Confidence 98754
No 184
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.2e-41 Score=363.76 Aligned_cols=202 Identities=34% Similarity=0.557 Sum_probs=174.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh---HHHhh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~---~~lr~ 460 (1091)
|+++|++++|+++ +++|+|+||++++|++++|+||+|||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999632 469999999999999999999999999999999999999999999999999987754 34788
Q ss_pred ceeEEeccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 461 KIGLVSQEPVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
.++||+|++.+|. .|++||+.++.. ..+ ++++.++++..++.+...+.| .+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHH
Confidence 9999999999998 599999987531 112 335666777777766554433 4799999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEE
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~I 598 (1091)
|||++++|+|+||||||++||+++.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 57999999999999875 999999999974
No 185
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.9e-42 Score=363.51 Aligned_cols=201 Identities=38% Similarity=0.652 Sum_probs=173.4
Q ss_pred EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeE
Q 001371 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1091)
Q Consensus 385 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~ 464 (1091)
+++|++++|++. ++++|+|+||++++|++++|+||+|||||||+++|+|+++|++|+|.+||.++.+.+...+|++|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 2479999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EeccC--ccccccHHHHhccCCCC--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 465 VSQEP--VLFTGSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 465 V~Q~~--~Lf~~TIreNI~~g~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
++|++ .+++.|++||+.++... .+ ++++.++++..++.+++.+ ....||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99998 36788999999875321 12 2344556666666554433 346899999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCE
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~ 597 (1091)
++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998875 47899999999999887 99999999985
No 186
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.2e-41 Score=386.35 Aligned_cols=208 Identities=30% Similarity=0.497 Sum_probs=178.9
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCc----cccCCChHHHh----hceeEEeccCc
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI----NLKEFQLQWIR----KKIGLVSQEPV 470 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~----~i~~~~~~~lr----~~ia~V~Q~~~ 470 (1091)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||. ++..++.+.+| ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 46899999999999999999999999999999999999999999999996 67777665543 57999999999
Q ss_pred ccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCE
Q 001371 471 LFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1091)
Q Consensus 471 Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~I 543 (1091)
+|+ .|++||+.|+.. ..+ +++..++++..++.++.++.| .+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 799999998732 112 245567778877766654433 46999999999999999999999
Q ss_pred EEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcCCCchhHH
Q 001371 544 LLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1091)
Q Consensus 544 liLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~ 617 (1091)
||||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+++|++.++...|.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 999999999999999999999988753 78999999999986 569999999999999999999998764444543
No 187
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-41 Score=376.73 Aligned_cols=217 Identities=32% Similarity=0.566 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCC----ChHH
Q 001371 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQW 457 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~----~~~~ 457 (1091)
|+++|++|+|++.. ..++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 14699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhhceeEEeccC--ccccccHHHHhccCCC--CCCHHH----HHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKD--DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 458 lr~~ia~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~~----i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
+|+.|+|++|+| .+|+.|++|||.++.. ..+.++ +.++++..++.+ ........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 888999999998 6889999999987531 123333 233344444421 1224455689999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
|++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998865 4789999999999885 5999999999999999999998
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
...
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 754
No 188
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=368.54 Aligned_cols=218 Identities=22% Similarity=0.386 Sum_probs=181.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH-Hhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~-lr~~ 461 (1091)
-|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|.++.+++... .|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 3899999999963 47999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred eeEEeccCccccc-cHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 462 IGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
++|++|++.+|.+ |++||+.++....+.++..+.+ .+.++.++...++ .......||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRLHER-RIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHHHHHH-HhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 9999998864322222222211 1122222211111 2234568999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhc
Q 001371 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
|+|+||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998865 479999999999876 5699999999999999999999864
No 189
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-41 Score=377.30 Aligned_cols=219 Identities=30% Similarity=0.523 Sum_probs=182.0
Q ss_pred CcEEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccC----C-C
Q 001371 382 GDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----F-Q 454 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~----~-~ 454 (1091)
+.|+++|++++|++++ ..++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997432 1359999999999999999999999999999999999999999999999998852 2 3
Q ss_pred hHHHhhceeEEeccC--ccccccHHHHhccCCC--CCCHHH----HHHHHHHcccHHHHhhCCCCcccccccCCCCCChH
Q 001371 455 LQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKD--DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1091)
Q Consensus 455 ~~~lr~~ia~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~~----i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 526 (1091)
...+|++|+||+|+| .+|+.|++|||.++.. ..+.++ +.++++..+ ||++ .......+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~---~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQ-------LPED---YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CChh---HhcCChhhCCHH
Confidence 567888999999998 4788899999987632 122322 222333332 2222 223455789999
Q ss_pred HHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecC
Q 001371 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 527 QkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt 603 (1091)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 789999999999875 599999999999999999
Q ss_pred hhHHhcC
Q 001371 604 HSKLVED 610 (1091)
Q Consensus 604 ~~eL~~~ 610 (1091)
++++...
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9998754
No 190
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=374.26 Aligned_cols=213 Identities=29% Similarity=0.487 Sum_probs=182.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcccc--CCChHHHhhc
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRKK 461 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~--~~~~~~lr~~ 461 (1091)
|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.+||.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 46999999999999999999999999999999999999999999999999985 3445677889
Q ss_pred eeEEeccCc--cccccHHHHhccCCC--CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 462 IGLVSQEPV--LFTGSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 462 ia~V~Q~~~--Lf~~TIreNI~~g~~--~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
|+||+|++. ++..|+.||+.++.. ..+. +++.++++..++.++.. ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 999999985 677899999987521 1222 33455666666655432 2345799999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcC
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998865 4789999999999985 5999999999999999999998764
No 191
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-41 Score=375.13 Aligned_cols=218 Identities=28% Similarity=0.497 Sum_probs=182.7
Q ss_pred cEEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCC----ChH
Q 001371 383 DIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQ 456 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~----~~~ 456 (1091)
.|+++|++++|++.. .+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 14699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhhceeEEeccC--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 457 WIRKKIGLVSQEP--VLFTGSIKDNIAYGKD--DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 457 ~lr~~ia~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..|+.|+|++|+| .+|+.|++|||.++.. ..+.+ ++.++++.+++.. ........+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHH
Confidence 6788999999998 5888999999987532 12222 3344455554431 112334568999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~e 606 (1091)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998874 4789999999999875 599999999999999999999
Q ss_pred HhcC
Q 001371 607 LVED 610 (1091)
Q Consensus 607 L~~~ 610 (1091)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 8653
No 192
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-41 Score=371.06 Aligned_cols=220 Identities=31% Similarity=0.458 Sum_probs=190.0
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCcccc----
Q 001371 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK---- 451 (1091)
Q Consensus 381 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~---- 451 (1091)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|++|||||||+++|.|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 356999999999963 4699999999999999999999999999999999999975 7999999998874
Q ss_pred CCChHHHhhceeEEeccCccccccHHHHhccCCC--C-----CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCC
Q 001371 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--D-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1091)
Q Consensus 452 ~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~--~-----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 524 (1091)
..+...+|+.++|++|++.+|.+|++|||.++.. . ..++++.++++.+++.+.+. +..+.....||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3345678889999999999999999999987631 1 12355667777776654332 34456677899
Q ss_pred hHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecC
Q 001371 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 525 GGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt 603 (1091)
||||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877789999999999985 599999999999999999
Q ss_pred hhHHhcC
Q 001371 604 HSKLVED 610 (1091)
Q Consensus 604 ~~eL~~~ 610 (1091)
++++...
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9998754
No 193
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=371.16 Aligned_cols=218 Identities=32% Similarity=0.504 Sum_probs=188.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~--~~~ 455 (1091)
.|+++|++++|++ .++|+|+||+|++||+++|+|++|||||||+++|+|+++| ++|+|.+||.++.+ .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 5899999999963 4699999999999999999999999999999999999985 48999999998864 455
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCC------CCC-HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD------DAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~------~~~-~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
+.+|++++||+|++.+|+.|++||+.++.. +.+ ++++.++++.+++.+++.. ........||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 678889999999999999999999987521 111 2345677777777655432 23445678999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEe-----CCEEeeec
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH-----RGKIVEKG 602 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~-----~G~Ive~G 602 (1091)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999988777999999999999865 99999997 59999999
Q ss_pred ChhHHhcC
Q 001371 603 THSKLVED 610 (1091)
Q Consensus 603 t~~eL~~~ 610 (1091)
+++++.+.
T Consensus 237 ~~~~~~~~ 244 (259)
T PRK14260 237 VTTQIFSN 244 (259)
T ss_pred CHHHHhcC
Confidence 99998754
No 194
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-41 Score=373.06 Aligned_cols=219 Identities=34% Similarity=0.531 Sum_probs=187.7
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCcEEEECCccccC--CC
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-----~~~G~I~idg~~i~~--~~ 454 (1091)
..|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35899999999963 469999999999999999999999999999999999997 689999999999865 34
Q ss_pred hHHHhhceeEEeccCccccccHHHHhccCC-----CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 455 ~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~-----~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
...+|++++||+|++.+|..|++|||.++. +...+++++++++..++.+.+.. ....+..+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 567888999999999999999999998752 11124456677777766443321 234556789999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEE-EEeCCEEeeecChhHH
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIA-VIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Ii-vl~~G~Ive~Gt~~eL 607 (1091)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||++..+.. ||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999865 99975 5799999999999998
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
.++
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 754
No 195
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.3e-41 Score=378.44 Aligned_cols=213 Identities=27% Similarity=0.484 Sum_probs=183.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ ..+|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5899999999963 46999999999999999999999999999999999999999999999999997755 4578899
Q ss_pred eEEeccCcccc-ccHHHHhccCCC--CCCHH----HHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKD--DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~--~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
|||||++.+|. .|++||+.|... ..+.+ ++.++++..++ ++..++.++ +||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~----~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL-------ENKADAKVG----ELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chHhcCchh----hCCHHHHHHHHHHH
Confidence 99999999886 699999985321 12222 23344444443 344566654 69999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||.++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999998875 47899999999999865 999999999999999999999754
No 196
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-41 Score=378.95 Aligned_cols=226 Identities=31% Similarity=0.450 Sum_probs=188.0
Q ss_pred cEEEEeEEEECCCCC-------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh
Q 001371 383 DIELRDVYFSYPARP-------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~-------~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~ 455 (1091)
-|+++|++++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.++.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999988875
Q ss_pred H---HHhhceeEEeccCc--ccc-ccHHHHhccC---CCCCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCC
Q 001371 456 Q---WIRKKIGLVSQEPV--LFT-GSIKDNIAYG---KDDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1091)
Q Consensus 456 ~---~lr~~ia~V~Q~~~--Lf~-~TIreNI~~g---~~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~ 522 (1091)
+ .+|++|+||+|+|. |+. -||.+|+..+ ....+ .+++.++++.+++.+. +++. ....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------HhcC----CCcc
Confidence 4 56789999999994 544 4899988532 11112 3456677777776421 2233 2357
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEe
Q 001371 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1091)
Q Consensus 523 LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv 599 (1091)
||||||||++|||||+.+|++||+||||++||..+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 7899999999999975 9999999999999
Q ss_pred eecChhHHhcCCCchhHHH
Q 001371 600 EKGTHSKLVEDPEGAYSQL 618 (1091)
Q Consensus 600 e~Gt~~eL~~~~~~~y~~l 618 (1091)
|.|+.+++.+++...|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 9999999988654556543
No 197
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.3e-41 Score=363.10 Aligned_cols=198 Identities=31% Similarity=0.511 Sum_probs=170.8
Q ss_pred EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeE
Q 001371 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1091)
Q Consensus 385 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~ 464 (1091)
+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 46999999999999999999999999999999999999999999999998775 46789999
Q ss_pred EeccCcc---ccccHHHHhccCCCC----------CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 465 VSQEPVL---FTGSIKDNIAYGKDD----------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 465 V~Q~~~L---f~~TIreNI~~g~~~----------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
|+|++.+ |+.|++|||.++... ..++++.++++..++.+++.+. ..+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHH
Confidence 9999976 668999999876431 1234567777887777655432 347999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeec
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 602 (1091)
+||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999998865 67899999999999865 9999999986 55554
No 198
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-41 Score=366.17 Aligned_cols=211 Identities=36% Similarity=0.582 Sum_probs=186.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++|+|++ +++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|+++.+.+.. ++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence 478999999963 4699999999999999999999999999999999999999999999999999876643 67899
Q ss_pred EEeccCccccc-cHHHHhccCCC------CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGKD------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~~------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
||+|++.+|.+ |++||+.++.. ...++++.++++..++.+++.+.| .+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 99999986521 112446677778878877766655 5899999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999988754 7999999999999865 999999999999999999988754
No 199
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-41 Score=368.25 Aligned_cols=212 Identities=27% Similarity=0.478 Sum_probs=186.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEeccCcc-ccccHHHHhccCCCCC------CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVL-FTGSIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~L-f~~TIreNI~~g~~~~------~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
|++|++.+ ++.|++||+.++.... .++++.++++..++.+...+ ....||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99999987 6789999998763211 13345666777766554433 346899999999999999
Q ss_pred hh------cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 537 IL------KDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 537 ll------~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
|+ .+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998875 4789999999999886 5999999999999999999988
Q ss_pred hc
Q 001371 608 VE 609 (1091)
Q Consensus 608 ~~ 609 (1091)
..
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 65
No 200
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=3.3e-41 Score=363.84 Aligned_cols=208 Identities=28% Similarity=0.434 Sum_probs=179.8
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH---H
Q 001371 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---I 458 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~---l 458 (1091)
-|+++|++++|++... .++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974211 36999999999999999999999999999999999999999999999999998887653 3
Q ss_pred -hhceeEEeccCccccc-cHHHHhccCC---C---CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 459 -RKKIGLVSQEPVLFTG-SIKDNIAYGK---D---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 459 -r~~ia~V~Q~~~Lf~~-TIreNI~~g~---~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
++.++|++|++.+|.. |++||+.++. . ...++++.++++..++.+.+.+.| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999999885 9999998642 1 112345677788888776665544 4799999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhccCeEEEEeCCEEeee
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 601 (1091)
++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|+|+++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988743 7899999999999989999999999999864
No 201
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.8e-41 Score=347.37 Aligned_cols=172 Identities=39% Similarity=0.705 Sum_probs=162.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++. +.++++|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.+||.++.+++.+.+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999742 346999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCE
Q 001371 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1091)
Q Consensus 464 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~I 543 (1091)
|++|++.+|+.|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEEeCCEE
Q 001371 544 LLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1091)
Q Consensus 544 liLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~I 598 (1091)
+||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 47899999999999999999999999974
No 202
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-41 Score=373.45 Aligned_cols=214 Identities=33% Similarity=0.551 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccC--CChHHHhhc
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKK 461 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~--~~~~~lr~~ 461 (1091)
|+++|++++|++ ..++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 3469999999999999999999999999999999999999999999999999852 334567889
Q ss_pred eeEEeccC--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 462 IGLVSQEP--VLFTGSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 462 ia~V~Q~~--~Lf~~TIreNI~~g~~--~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
|+|++|+| .+|+.|++|||.++.. ..+. +++.++++..++.++... ...+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-----------PPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-----------ChhhCCHHHHHHHHH
Confidence 99999998 5788999999987632 1222 345566666666543322 235799999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcC
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|||++.+|+++||||||++||+.+...+.+.|.++. +++|+|++||++..+. .||+|++|++|++++.|+++++...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998875 4789999999999986 5999999999999999999998754
No 203
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.8e-41 Score=363.42 Aligned_cols=211 Identities=33% Similarity=0.531 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++|+|++ +++|+|+||+|.+||+++|+||+|||||||+++|+|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999963 469999999999999999999999999999999999999999999999999876553 477899
Q ss_pred EEeccCccccc-cHHHHhccCCCC--CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~~~--~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
||||+|.+|.+ |++||+.++.+. .+ ++++.++++..++.++..+ ...+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDR-----------YPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999975 999999876421 11 2345555666655544433 335899999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
++++|+++||||||++||+++++.+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999988654 7899999999998765 999999999999999999999754
No 204
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-41 Score=379.03 Aligned_cols=227 Identities=25% Similarity=0.351 Sum_probs=185.7
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC----CCCcEEEECCccccCCChHHH
Q 001371 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGINLKEFQLQWI 458 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~----~~~G~I~idg~~i~~~~~~~l 458 (1091)
++++|++++|+.+.. ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 789999999974321 369999999999999999999999999999999999998 489999999999999987766
Q ss_pred hh----ceeEEeccCc--ccc-ccHHHHh----ccCCC---CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCC
Q 001371 459 RK----KIGLVSQEPV--LFT-GSIKDNI----AYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1091)
Q Consensus 459 r~----~ia~V~Q~~~--Lf~-~TIreNI----~~g~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 524 (1091)
|+ .|+||+|+|. +.. -|+.+|+ ..... ...++++.++++..++.+.. ........+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 54 6999999995 332 3565554 32211 11234566777777764321 12334566899
Q ss_pred hHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeee
Q 001371 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEK 601 (1091)
Q Consensus 525 GGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~ 601 (1091)
||||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988753 789999999999985 5999999999999999
Q ss_pred cChhHHhcCCCchhHHH
Q 001371 602 GTHSKLVEDPEGAYSQL 618 (1091)
Q Consensus 602 Gt~~eL~~~~~~~y~~l 618 (1091)
|+.+++.+++...|.+.
T Consensus 236 g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQA 252 (326)
T ss_pred CCHHHHhhCCCChHHHH
Confidence 99999987755556543
No 205
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-41 Score=358.32 Aligned_cols=201 Identities=31% Similarity=0.565 Sum_probs=176.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ .. .|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 578999999963 22 39999999999999999999999999999999999999999999999887654 367899
Q ss_pred EEeccCccccc-cHHHHhccCCC-C-----CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGKD-D-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~~-~-----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
|++|++.+|.+ |++||+.++.. . .+++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999987632 1 13456788888888877766655 3799999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeec
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 602 (1091)
++++|+++||||||++||+++.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999998875 37899999999999865 9999999999998765
No 206
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4e-41 Score=369.32 Aligned_cols=212 Identities=26% Similarity=0.459 Sum_probs=184.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
++++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 47999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEeccCc-cccccHHHHhccCCCC----------CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 001371 464 LVSQEPV-LFTGSIKDNIAYGKDD----------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 464 ~V~Q~~~-Lf~~TIreNI~~g~~~----------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRia 532 (1091)
|++|++. .+..|++||+.++... ..++++.++++..++.+... .....||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-----------RDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHH
Confidence 9999985 4568999999876310 11234566666666654332 244679999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhc
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
||||++.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|+|++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998875 3789999999999985 599999999999999999998754
No 207
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-41 Score=368.06 Aligned_cols=218 Identities=30% Similarity=0.417 Sum_probs=190.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccCC--Ch
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~~--~~ 455 (1091)
.+.+++.+++|. +.++|+|+||+|++||+++|+|++|||||||+++|.|+++| ++|+|.+||.++.+. ..
T Consensus 8 ~~~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYG---NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 478999999995 34799999999999999999999999999999999999987 799999999998653 44
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCC-----CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~-----~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
..+|+.++||+|++.+|+.|++|||.++.. ....+++.++++.+++.+.+.. ..++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 567889999999999999999999997632 1123567788888887665543 2345667899999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEe--------CCEEeee
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIH--------RGKIVEK 601 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~--------~G~Ive~ 601 (1091)
++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|+|++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 9999999999999999999999999999999999998877889999999999875 599999996 8999999
Q ss_pred cChhHHhcC
Q 001371 602 GTHSKLVED 610 (1091)
Q Consensus 602 Gt~~eL~~~ 610 (1091)
|+++++.+.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999999765
No 208
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-41 Score=368.00 Aligned_cols=219 Identities=31% Similarity=0.504 Sum_probs=183.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~-----~G~I~idg~~i~~--~~~ 455 (1091)
-++++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++|+ +|+|.++|.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999963 47999999999999999999999999999999999999874 8999999999875 345
Q ss_pred HHHhhceeEEeccCccccc-cHHHHhccCCC--CC-CHHHH----HHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 456 QWIRKKIGLVSQEPVLFTG-SIKDNIAYGKD--DA-TTEEI----RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~-TIreNI~~g~~--~~-~~~~i----~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
..+|+.++|++|++.+|.. |++||+.++.. .. .+++. .+.++..++.+.+ ++..++ ...+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKT----PATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcC----CcccCCHHH
Confidence 5778899999999999984 99999986532 11 22322 2233334433322 223343 346799999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhH
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 606 (1091)
|||++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999875 99999999999999999999
Q ss_pred HhcCC
Q 001371 607 LVEDP 611 (1091)
Q Consensus 607 L~~~~ 611 (1091)
+...+
T Consensus 234 ~~~~~ 238 (252)
T PRK14272 234 LFTNP 238 (252)
T ss_pred HHhCc
Confidence 97653
No 209
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.2e-41 Score=379.09 Aligned_cols=228 Identities=22% Similarity=0.389 Sum_probs=187.5
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CcEEEECCccccCCChHHH
Q 001371 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWI 458 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~---~G~I~idg~~i~~~~~~~l 458 (1091)
-++++|++++|+.+. ..++|+|+||+|++||++||||+||||||||+++|+|+++|. +|+|.+||.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996422 246999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----hceeEEeccCc--ccc-ccHHHHhccC---CCCCCHHH----HHHHHHHcccHHHHhhCCCCcccccccCCCCCC
Q 001371 459 R----KKIGLVSQEPV--LFT-GSIKDNIAYG---KDDATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1091)
Q Consensus 459 r----~~ia~V~Q~~~--Lf~-~TIreNI~~g---~~~~~~~~----i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 524 (1091)
| ++|+||+|+|. ++. .|+.+|+... ....+.++ +.++++.+ .||++++ .++....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~v-------gL~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAV-------KMPEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------CCCChHH-HhcCCcccCC
Confidence 4 47999999993 444 4777777432 11123322 33334433 3444332 3566778999
Q ss_pred hHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeee
Q 001371 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEK 601 (1091)
Q Consensus 525 GGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~ 601 (1091)
||||||++|||||+.+|++||+|||||+||..+...+.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 789999999999986 5999999999999999
Q ss_pred cChhHHhcCCCchhHHH
Q 001371 602 GTHSKLVEDPEGAYSQL 618 (1091)
Q Consensus 602 Gt~~eL~~~~~~~y~~l 618 (1091)
|+.+++.+.+...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998765566653
No 210
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-41 Score=373.53 Aligned_cols=219 Identities=30% Similarity=0.454 Sum_probs=185.2
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCcEEEECCccccCC--C
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--Q 454 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-----~~~G~I~idg~~i~~~--~ 454 (1091)
..|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999963 369999999999999999999999999999999999864 4999999999988653 3
Q ss_pred hHHHhhceeEEeccCccccccHHHHhccCCC--CC-C----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DA-T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 455 ~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~--~~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
...+|++++||+|++.+|+.|++|||.++.. .. + ++++.++++..++.+.+. .........|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHH
Confidence 3467889999999999999999999997632 11 1 233455566655533221 12334567899999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhH
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 606 (1091)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||++..+.. ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999864 99999999999999999999
Q ss_pred HhcC
Q 001371 607 LVED 610 (1091)
Q Consensus 607 L~~~ 610 (1091)
+.++
T Consensus 268 ~~~~ 271 (286)
T PRK14275 268 LFTN 271 (286)
T ss_pred HHhC
Confidence 9765
No 211
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.1e-41 Score=364.43 Aligned_cols=212 Identities=34% Similarity=0.527 Sum_probs=173.9
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh---HHHh
Q 001371 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIR 459 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~---~~lr 459 (1091)
|+++||+++|++++ +.++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996421 1369999999999999999999999999999999999999999999999999988774 5778
Q ss_pred hceeEEeccCc--cc-cccHHHHhccCC----CCCCHHHHHHHHHHcccHHHHhhCCCCcc-cccccCCCCCChHHHHHH
Q 001371 460 KKIGLVSQEPV--LF-TGSIKDNIAYGK----DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 460 ~~ia~V~Q~~~--Lf-~~TIreNI~~g~----~~~~~~~i~~a~~~a~l~~~i~~lp~G~~-T~vge~G~~LSGGQkQRi 531 (1091)
++++|++|++. ++ ..|++|||.++. +...++....+. ++.++.+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 89999999993 44 579999997642 111122211111 1223333 232 234555678999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeec
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~G 602 (1091)
+||||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999988754 789999999999987 59999999999998765
No 212
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-41 Score=368.82 Aligned_cols=220 Identities=23% Similarity=0.440 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH-hhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l-r~~ 461 (1091)
-|+++|++++|++ .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 479999999999999999999999999999999999999999999999999988876554 456
Q ss_pred eeEEeccCccccc-cHHHHhccCCCCC---------------CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCCh
Q 001371 462 IGLVSQEPVLFTG-SIKDNIAYGKDDA---------------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~-TIreNI~~g~~~~---------------~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSG 525 (1091)
++||+|++.+|.. |++|||.++.... .+++ .+.. ..+.+.++.+ |++........+|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SEAL--DRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hHHH--HHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 9999999999985 9999999763110 0000 0000 1122334443 454555666778999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeec
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 602 (1091)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 999999999999999999999999999999999999999988753 6899999999999865 9999999999999999
Q ss_pred ChhHHhcC
Q 001371 603 THSKLVED 610 (1091)
Q Consensus 603 t~~eL~~~ 610 (1091)
+.+++..+
T Consensus 237 ~~~~~~~~ 244 (255)
T PRK11300 237 TPEEIRNN 244 (255)
T ss_pred CHHHHhhC
Confidence 99988643
No 213
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-41 Score=364.23 Aligned_cols=217 Identities=24% Similarity=0.473 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH-Hhhce
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKI 462 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~-lr~~i 462 (1091)
|+++|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|.++...+... .|+.+
T Consensus 4 l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 789999999963 47999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred eEEeccCcccc-ccHHHHhccCCC---CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
+|++|++.+|. .|++||+.++.. ..+.++.++ .+++.++.+ |++.........||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED-----RANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHH-----HHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 99999999988 499999987531 122222111 123344444 4444455667789999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcC
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
++|++|||||||++||+.+.+.+.+.++++. +++|+|++||++..+ ..||+|++|++|++++.|++++++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 9999999999999999999999998888765 478999999999766 45999999999999999999998653
No 214
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-41 Score=367.58 Aligned_cols=225 Identities=28% Similarity=0.478 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECC------ccccCCChH
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG------INLKEFQLQ 456 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg------~~i~~~~~~ 456 (1091)
.|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| +++.+++..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5899999999963 4699999999999999999999999999999999999999997666554 677777778
Q ss_pred HHhhceeEEeccCccccc-cHHHHhccCCC--CC-CHH----HHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 457 WIRKKIGLVSQEPVLFTG-SIKDNIAYGKD--DA-TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 457 ~lr~~ia~V~Q~~~Lf~~-TIreNI~~g~~--~~-~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
.+|+.++|++|+|.+|.+ |++|||.++.. .. +++ ++.++++..++++++. ......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 889999999999999975 99999997632 11 222 3445555555543321 123446678999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|+++||||||++||+.+++.+.+.|.++.+++|+|++||++..+ ..||++++|++|++++.|+++|+
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999887779999999999998 56999999999999999999999
Q ss_pred hcCCCchhHH
Q 001371 608 VEDPEGAYSQ 617 (1091)
Q Consensus 608 ~~~~~~~y~~ 617 (1091)
.+.+...|.+
T Consensus 240 ~~~~~~~~~~ 249 (257)
T PRK14246 240 FTSPKNELTE 249 (257)
T ss_pred HhCCCcHHHH
Confidence 8754433443
No 215
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=5.9e-41 Score=360.18 Aligned_cols=204 Identities=26% Similarity=0.453 Sum_probs=174.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH---Hhh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IRK 460 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~---lr~ 460 (1091)
|+++|++++|+. ++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++..++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 689999999952 347999999999999999999999999999999999999999999999999998776543 688
Q ss_pred ceeEEeccCcc-ccccHHHHhccCC--CCCCHH----HHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 461 KIGLVSQEPVL-FTGSIKDNIAYGK--DDATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 461 ~ia~V~Q~~~L-f~~TIreNI~~g~--~~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
.++|++|+|.+ ++.|++|||.++. ...+++ ++.++++..++.+++.+ ...+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHH
Confidence 99999999987 5679999998752 112222 34556666666554443 335899999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEee
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive 600 (1091)
|||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999998874 46899999999999876 89999999999863
No 216
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-41 Score=369.52 Aligned_cols=214 Identities=26% Similarity=0.432 Sum_probs=188.0
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
..|+++|++++|++ ..+|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.+||.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 35899999999963 469999999999999999999999999999999999999999999999999998888888889
Q ss_pred eeEEeccCcccc-ccHHHHhccCC-CC---------CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 462 IGLVSQEPVLFT-GSIKDNIAYGK-DD---------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 462 ia~V~Q~~~Lf~-~TIreNI~~g~-~~---------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
++||+|++.+|. .|++||+.++. +. ..++++.++++..++.++..+ ....||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHH
Confidence 999999998875 69999998752 11 123356677777777655433 346899999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
++||||++++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||++..+. .||+|++|++|+|++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 789999999999775 5999999999999999999988
Q ss_pred hc
Q 001371 608 VE 609 (1091)
Q Consensus 608 ~~ 609 (1091)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
No 217
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=5.1e-41 Score=376.57 Aligned_cols=213 Identities=28% Similarity=0.464 Sum_probs=180.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ .++|+|+||+|++|+++||+||+|||||||+++|+|+++|++|+|.++|.++...+ ..+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-RLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-HHHhhcE
Confidence 4899999999963 46999999999999999999999999999999999999999999999999987543 5678899
Q ss_pred eEEeccCcccc-ccHHHHhccCCC--CCCHHH----HHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKD--DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~--~~~~~~----i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+||||++.++. .|++||+.+... ..+.++ +.++++..++ ++..++.+ .+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~~~~~~~----~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADVRV----ALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-------hhHhcCch----hhCCHHHHHHHHHHH
Confidence 99999999885 699999974211 123322 3334444443 33344444 469999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999998864 4789999999999986 4999999999999999999998754
No 218
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-41 Score=360.82 Aligned_cols=209 Identities=30% Similarity=0.522 Sum_probs=184.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ .+ .|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 689999999963 22 399999999999999999999999999999999999999999999998876542 56899
Q ss_pred EEeccCccccc-cHHHHhccCC-CC-----CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGK-DD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~-~~-----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
|++|++.+|.+ |++|||.++. +. .+++++.++++..++.+.+.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998753 11 12456788889998888777666 3799999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999988753 7899999999998865 999999999999999999998754
No 219
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-41 Score=368.27 Aligned_cols=218 Identities=32% Similarity=0.492 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~--~~~ 455 (1091)
.++++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3699999999999999999999999999999999999974 69999999999853 445
Q ss_pred HHHhhceeEEeccCcccc-ccHHHHhccCCC---CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 456 QWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~---~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
..+|+.++||+|++.+|. .|++||+.++.. ..+ ++++.++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678889999999999997 599999986531 111 234455666666644332 22344567899999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEe------CCEEee
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIH------RGKIVE 600 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~------~G~Ive 600 (1091)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||++..+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999998877799999999999875 599999997 899999
Q ss_pred ecChhHHhcC
Q 001371 601 KGTHSKLVED 610 (1091)
Q Consensus 601 ~Gt~~eL~~~ 610 (1091)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998754
No 220
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.1e-41 Score=359.47 Aligned_cols=201 Identities=33% Similarity=0.539 Sum_probs=171.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccC--CChHHHhhc
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKK 461 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~--~~~~~lr~~ 461 (1091)
|+++|++++|++ .++|+|+||++++|++++|+||+|||||||+++|+|+++|++|+|.++|.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999963 469999999999999999999999999999999999999999999999998853 455677889
Q ss_pred eeEEeccCcccc-ccHHHHhccCCC---CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 462 IGLVSQEPVLFT-GSIKDNIAYGKD---DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 462 ia~V~Q~~~Lf~-~TIreNI~~g~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
++|++|++.+|. .|++||+.++.. ..+. +++.++++..++.+.+. ....+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKAD-----------AYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------hCccccCHHHHHHHHH
Confidence 999999999987 699999987531 1222 23444455555544333 3446899999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEE
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~I 598 (1091)
|||++++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|+|
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998875 47899999999999865 999999999975
No 221
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=373.77 Aligned_cols=219 Identities=30% Similarity=0.525 Sum_probs=188.3
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCcEEEECCccccCC--C
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--Q 454 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-----~~~G~I~idg~~i~~~--~ 454 (1091)
..|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999963 469999999999999999999999999999999999986 6899999999998653 4
Q ss_pred hHHHhhceeEEeccCccccccHHHHhccCCCC-------------------CCHHHHHHHHHHcccHHHHhhCCCCcccc
Q 001371 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-------------------ATTEEIRVATELANAAKFIDKLPQGIDTL 515 (1091)
Q Consensus 455 ~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~-------------------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~ 515 (1091)
...+|+.++||+|++.+|+.|++||+.++... ..++++.++++.+++.+ ++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHH
Confidence 56788899999999999999999999976321 11234555566555533 33455
Q ss_pred cccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeE-EEE
Q 001371 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMI-AVI 593 (1091)
Q Consensus 516 vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~I-ivl 593 (1091)
+.....+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 66777899999999999999999999999999999999999999999999998777899999999999765 9997 577
Q ss_pred eCCEEeeecChhHHhcC
Q 001371 594 HRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 594 ~~G~Ive~Gt~~eL~~~ 610 (1091)
++|+|++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999998754
No 222
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-41 Score=381.11 Aligned_cols=211 Identities=28% Similarity=0.488 Sum_probs=186.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCC----ChHHHh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQWIR 459 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~----~~~~lr 459 (1091)
|++ |++++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +....|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 89999963 2 23 99999999999999999999999999999999999999999999998653 245568
Q ss_pred hceeEEeccCcccc-ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
++++||+|++.+|. .|++|||.|+.+...++++.++++..++.++.++.| .+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHH
Confidence 89999999999996 699999999865455677888888888876665544 579999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcCC
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~ 611 (1091)
++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999988754 6899999999997754 9999999999999999999998764
No 223
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-41 Score=365.88 Aligned_cols=218 Identities=30% Similarity=0.451 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~--~---~~G~I~idg~~i~~--~~~ 455 (1091)
-|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 469999999999999999999999999999999999975 4 59999999998864 345
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCC--CC-C----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DA-T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~--~~-~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..+|+.++||+|++.+|+.|++||+.++.. .. . ++++.++++.+++.+.+ .........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 567889999999999999999999987521 11 1 23344555555554332 2233445678999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+..++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999986 5999999999999999999888
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
...
T Consensus 235 ~~~ 237 (252)
T PRK14255 235 FLN 237 (252)
T ss_pred hcC
Confidence 765
No 224
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=366.53 Aligned_cols=218 Identities=31% Similarity=0.503 Sum_probs=187.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~-----~G~I~idg~~i~~--~~~ 455 (1091)
.|+++|++|+|++ .++|+|+||+|++|++++|+|++|||||||+++|.|+++|+ +|+|.++|.++.. .+.
T Consensus 7 ~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 5899999999963 36999999999999999999999999999999999999985 8999999998853 345
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCC------CCCC-HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGK------DDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~------~~~~-~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
..+|+.++|++|++.+|..|++||+.++. +..+ ++++.++++..++.+++.. ..+.....||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 67888999999999999999999998652 1111 2345667777776555442 23456678999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEeC-----CEEee
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHR-----GKIVE 600 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~-----G~Ive 600 (1091)
||++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++ |+|++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998753 4799999999999886 5999999999 99999
Q ss_pred ecChhHHhcC
Q 001371 601 KGTHSKLVED 610 (1091)
Q Consensus 601 ~Gt~~eL~~~ 610 (1091)
.|+++++...
T Consensus 237 ~~~~~~~~~~ 246 (261)
T PRK14258 237 FGLTKKIFNS 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999999765
No 225
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-41 Score=356.92 Aligned_cols=201 Identities=25% Similarity=0.472 Sum_probs=171.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 469999999999999999999999999999999999999999999999998753 4678999
Q ss_pred EEeccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
|++|++.+|.+ |++||+.++.. ..+ ++++.++++..++.+. ......+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEY-----------ANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHH-----------HhCcHhhCCHHHHHHHHHHHH
Confidence 99999999875 99999987421 111 2334444555444433 334556899999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeec
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 602 (1091)
++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999998864 47899999999998864 9999999999998765
No 226
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.6e-40 Score=366.14 Aligned_cols=227 Identities=24% Similarity=0.424 Sum_probs=187.5
Q ss_pred cEEEEeEEEECCCC------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChH
Q 001371 383 DIELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~ 456 (1091)
-|+++|++++|+.. .+.++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124799999999999999999999999999999999999999999999999998766666
Q ss_pred HHhhceeEEeccCc--ccc-ccHHHHhccCC---CCC----CHHHHHHHHHHcccH-HHHhhCCCCcccccccCCCCCCh
Q 001371 457 WIRKKIGLVSQEPV--LFT-GSIKDNIAYGK---DDA----TTEEIRVATELANAA-KFIDKLPQGIDTLVGEHGTQLSG 525 (1091)
Q Consensus 457 ~lr~~ia~V~Q~~~--Lf~-~TIreNI~~g~---~~~----~~~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G~~LSG 525 (1091)
..|+.++||+|++. ++. -|+.+|+.++. ... .++++.++++.+++. +.... ...+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY-----------YPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhc-----------CchhcCH
Confidence 66778999999985 444 48999986531 111 134566777777773 33222 2357999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeec
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 602 (1091)
|||||++||||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999986 9999999999999999
Q ss_pred ChhHHhcCCC-chhHHHHH
Q 001371 603 THSKLVEDPE-GAYSQLIR 620 (1091)
Q Consensus 603 t~~eL~~~~~-~~y~~l~~ 620 (1091)
+++++.+.+. ..++.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 233 STADVLASPLHELTKRLIA 251 (267)
T ss_pred CHHHHhcCCCCHHHHHHHH
Confidence 9999986532 33444543
No 227
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=365.72 Aligned_cols=218 Identities=31% Similarity=0.436 Sum_probs=188.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccC--CCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~--~~~ 455 (1091)
-|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++| ++|+|.++|+++.+ .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 5999999999963 4699999999999999999999999999999999999864 69999999999864 344
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCCC-----CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~-----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
..+|+.|+|++|++.+|+.|++|||.++... ..++++.++++.+++.+++.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 5678899999999999999999999876321 123445667777777654432 2344567899999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEe---------CCEEee
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIH---------RGKIVE 600 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~---------~G~Ive 600 (1091)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999998877899999999999885 599999998 899999
Q ss_pred ecChhHHhcC
Q 001371 601 KGTHSKLVED 610 (1091)
Q Consensus 601 ~Gt~~eL~~~ 610 (1091)
.|+.+|+...
T Consensus 250 ~g~~~~~~~~ 259 (274)
T PRK14265 250 FSPTEQMFGS 259 (274)
T ss_pred eCCHHHHHhC
Confidence 9999998765
No 228
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-40 Score=359.67 Aligned_cols=210 Identities=29% Similarity=0.539 Sum_probs=184.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ ++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|.++...+. .|+.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 478999999962 38999999999999999999999999999999999999999999999999887654 367899
Q ss_pred EEeccCcccc-ccHHHHhccCCCC--C----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFT-GSIKDNIAYGKDD--A----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~-~TIreNI~~g~~~--~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
||+|++.+|. .|++||+.++... . .++++.++++..++.+++.+.| .+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999995 7999999875321 1 2334566777777776665544 5799999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
++++|++++|||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999988653 7999999999999875 999999999999999999998765
No 229
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=9.2e-41 Score=373.78 Aligned_cols=212 Identities=23% Similarity=0.435 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
++++|++++|+ ++.+|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++.+ +...+|++++
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 78999999996 3469999999999999999999999999999999999999999999999999877 4457888999
Q ss_pred EEeccCccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
|+||++.+|.. |++||+.+... ..+ .+++.++++..++.+ .......+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP-----------EQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------HhcCchhhCCHHHHHHHHHHHH
Confidence 99999999976 99999975321 112 234445555544443 3344456899999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.++
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998778999999999998865 999999999999999999998654
No 230
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=375.61 Aligned_cols=227 Identities=23% Similarity=0.357 Sum_probs=187.1
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC----CCCcEEEECCccccCCChHHH
Q 001371 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGINLKEFQLQWI 458 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~----~~~G~I~idg~~i~~~~~~~l 458 (1091)
|+++|++++|+.+. ...+|+|+||+|++||+++|||+||||||||+++|+|+.+ |++|+|.+||+++.+++.+.+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 78999999996421 2469999999999999999999999999999999999986 589999999999998887665
Q ss_pred h----hceeEEeccCcc--c-cccHHHHhccCC------C----C--CCHHHHHHHHHHcccHHHHhhCCCCcccccccC
Q 001371 459 R----KKIGLVSQEPVL--F-TGSIKDNIAYGK------D----D--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1091)
Q Consensus 459 r----~~ia~V~Q~~~L--f-~~TIreNI~~g~------~----~--~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~ 519 (1091)
+ +.|+||+|+|.. + ..||.+|+.... . + ..++++.++++..++.+.-. .....
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhCC
Confidence 3 479999999973 2 358999986421 0 0 11245667777777753211 11223
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCC
Q 001371 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1091)
Q Consensus 520 G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G 596 (1091)
...||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 358999999999999999999999999999999999999999999998754 7899999999999965 9999999999
Q ss_pred EEeeecChhHHhcCCCchhHHH
Q 001371 597 KIVEKGTHSKLVEDPEGAYSQL 618 (1091)
Q Consensus 597 ~Ive~Gt~~eL~~~~~~~y~~l 618 (1091)
+|+|.|+.+++.+++...|.+.
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHHH
Confidence 9999999999987655566553
No 231
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2e-40 Score=365.00 Aligned_cols=211 Identities=25% Similarity=0.409 Sum_probs=181.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CcEEEECCccccCC-----C
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEF-----Q 454 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~---~G~I~idg~~i~~~-----~ 454 (1091)
-|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|.|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 3899999999963 47999999999999999999999999999999999999986 49999999988654 3
Q ss_pred hHHHhhceeEEeccCcccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHcccHHHHhhCCCCcccccccC
Q 001371 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD--------------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1091)
Q Consensus 455 ~~~lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~~--------------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~ 519 (1091)
...+|+.++|+||++.+|. .|++||+.++..+ ..++++.++++..++.+.+.. .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------R 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------C
Confidence 4567889999999999887 5999999876321 112345666666666554432 4
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhh-hccCeEEEEeCC
Q 001371 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRG 596 (1091)
Q Consensus 520 G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G 596 (1091)
...||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 457999999999999999999999999999999999999999999998753 78999999999976 569999999999
Q ss_pred EEeeecChhHH
Q 001371 597 KIVEKGTHSKL 607 (1091)
Q Consensus 597 ~Ive~Gt~~eL 607 (1091)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999997
No 232
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.9e-40 Score=364.47 Aligned_cols=225 Identities=28% Similarity=0.453 Sum_probs=183.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcc-----ccCCChHH
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-----LKEFQLQW 457 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~-----i~~~~~~~ 457 (1091)
-|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999963 469999999999999999999999999999999999999999999999998 87776554
Q ss_pred ----HhhceeEEeccCc--cc-cccHHHHhccCC---CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 458 ----IRKKIGLVSQEPV--LF-TGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 458 ----lr~~ia~V~Q~~~--Lf-~~TIreNI~~g~---~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
+|+.++||+|++. ++ +.|+++||.+.. ...+.++..+ ..++.++.++-+ ++.....+.+|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3567999999984 33 358899986421 1111122211 124555555322 134567778999999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecCh
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~ 604 (1091)
|||++||||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988653 789999999999997 5999999999999999999
Q ss_pred hHHhcCCCchhH
Q 001371 605 SKLVEDPEGAYS 616 (1091)
Q Consensus 605 ~eL~~~~~~~y~ 616 (1091)
+++..++...|.
T Consensus 237 ~~~~~~~~~~~~ 248 (258)
T PRK11701 237 DQVLDDPQHPYT 248 (258)
T ss_pred HHHhcCCCCHHH
Confidence 999765333343
No 233
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.1e-40 Score=363.81 Aligned_cols=213 Identities=26% Similarity=0.426 Sum_probs=176.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCcEEEECCccccCCChHHH-hh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-RK 460 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~--~~~~~G~I~idg~~i~~~~~~~l-r~ 460 (1091)
|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|+|+ ++|++|+|.++|.++..++.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 4699999999999999999999999999999999999 47999999999999988877664 45
Q ss_pred ceeEEeccCccccc-cHHHHhccCCCC---------CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChH
Q 001371 461 KIGLVSQEPVLFTG-SIKDNIAYGKDD---------AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~~-TIreNI~~g~~~---------~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 526 (1091)
.++||+|+|.+|.+ |++||+.+.... .+ ++++.++++..++.+.. .+..++ ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHH
Confidence 59999999999885 899999764210 11 12344444444443211 122221 249999
Q ss_pred HHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc--cCeEEEEeCCEEeeecC
Q 001371 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 527 QkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~--aD~Iivl~~G~Ive~Gt 603 (1091)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998875 47899999999999876 79999999999999999
Q ss_pred hhHHh
Q 001371 604 HSKLV 608 (1091)
Q Consensus 604 ~~eL~ 608 (1091)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 98653
No 234
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.9e-40 Score=353.67 Aligned_cols=202 Identities=33% Similarity=0.557 Sum_probs=177.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
++++|++++|+. .++|+||++++|+.++|+||+|||||||+++|+|+++|++|+|.+||+++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999987644 4678899
Q ss_pred EEeccCccccc-cHHHHhccCC-CC-----CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGK-DD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~-~~-----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
||+|+|.+|.+ |++||+.++. +. .+++++.++++..++.+...+.|. +||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHH
Confidence 99999999874 9999998642 11 134567778888888877766663 799999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecC
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt 603 (1091)
++++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+. .||+|++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999988753 789999999999876 499999999999999875
No 235
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-40 Score=364.13 Aligned_cols=212 Identities=28% Similarity=0.422 Sum_probs=183.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC--------CcEEEECCccccCCCh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ--------AGEVLIDGINLKEFQL 455 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~--------~G~I~idg~~i~~~~~ 455 (1091)
|+++|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|.|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 689999999963 47999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhhceeEEeccCc-cccccHHHHhccCCC-C------CC---HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCC
Q 001371 456 QWIRKKIGLVSQEPV-LFTGSIKDNIAYGKD-D------AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~-Lf~~TIreNI~~g~~-~------~~---~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 524 (1091)
..+|+.++||+|++. +|..|++||+.++.. . .+ +++++++++..++ ++.++....+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcCCcccCC
Confidence 888889999999986 578899999987631 1 11 1234445555444 444555667899
Q ss_pred hHHHHHHHHHHHhh---------cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEE
Q 001371 525 GGQKQRIAIARAIL---------KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAV 592 (1091)
Q Consensus 525 GGQkQRialARAll---------~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iiv 592 (1091)
||||||++||||++ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999988754 689999999999986 5999999
Q ss_pred EeCCEEeeecChhHHhc
Q 001371 593 IHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 593 l~~G~Ive~Gt~~eL~~ 609 (1091)
|++|+|++.|+++++..
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999998864
No 236
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.3e-40 Score=375.69 Aligned_cols=213 Identities=30% Similarity=0.521 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ ..+|+|+||+|++|+++||+||+|||||||+++|+|+++|++|+|.++|.++.+.+ ...|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999963 46999999999999999999999999999999999999999999999999997654 5678899
Q ss_pred eEEeccCccc-cccHHHHhccCCC--CCCHHH----HHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLF-TGSIKDNIAYGKD--DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf-~~TIreNI~~g~~--~~~~~~----i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+||||++.++ ..|++||+.+... ..+.++ +.++++.+ .|++..++.++ +||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~-------~L~~~~~~~~~----~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFA-------RLESKADARVS----DLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCchhhCCChh----hCCHHHHHHHHHHH
Confidence 9999999986 5699999985321 122222 23333333 34445566654 69999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+|++.|+.+++.++
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999998875 47999999999999865 999999999999999999999754
No 237
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.4e-40 Score=358.15 Aligned_cols=210 Identities=27% Similarity=0.471 Sum_probs=170.0
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCcEEEECCccccCCChHHHh
Q 001371 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWIR 459 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~---~~~G~I~idg~~i~~~~~~~lr 459 (1091)
+.|+||+|+|++.+ .+++|+|+||+|++||+++|+||+|||||||+++|.|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998532 3689999999999999999999999999999999999999 99999999998875 34678
Q ss_pred hceeEEeccCccccc-cHHHHhccCCCCC----CHHHHHHHHHHcccHH-HHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDDA----TTEEIRVATELANAAK-FIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~-TIreNI~~g~~~~----~~~~i~~a~~~a~l~~-~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
+.++|++|++.+|++ |++|||.++.... ..++... ...++ .++.+ |+..........||||||||++|
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRK----KRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHH----HHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHH
Confidence 899999999999987 9999998752111 1111110 00111 12221 22222334557899999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCc--hhhhccCeEEEEeCCEEeeec
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRL--STVRNADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl--s~i~~aD~Iivl~~G~Ive~G 602 (1091)
|||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||++ .....||+|++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998864 478999999998 345679999999999999876
No 238
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.8e-38 Score=416.23 Aligned_cols=202 Identities=24% Similarity=0.298 Sum_probs=169.6
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccC----CCCCcEEEECCccccCCChHHHhhceeEEeccCcccc-
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY----DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT- 473 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~----~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~- 473 (1091)
+++|+|+|+++++||+++|+||||||||||+++|.|.. .|.+|+|.+||.++.+.. +.+|+.++||+|++.++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 56999999999999999999999999999999999986 578999999999987654 446778999999988876
Q ss_pred ccHHHHhccCC----C-----CCCHHHHH-----HHHHHcccHHHHhhCCCCccccccc-CCCCCChHHHHHHHHHHHhh
Q 001371 474 GSIKDNIAYGK----D-----DATTEEIR-----VATELANAAKFIDKLPQGIDTLVGE-HGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 474 ~TIreNI~~g~----~-----~~~~~~i~-----~a~~~a~l~~~i~~lp~G~~T~vge-~G~~LSGGQkQRialARAll 538 (1091)
-|++||+.|+. | +.++++.. ++++.. .|.+-.||.||+ ....||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY-------GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHc-------CcccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 59999998852 1 12333322 223333 344456888986 34679999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCch-hh-hccCeEEEEeCCEEeeecChhHHh
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS-TV-RNADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls-~i-~~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
.+|+|++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ .+ ..+|+|++|++|+++..|+.+++.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999999999998753 789999999974 44 569999999999999999999874
No 239
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3.7e-40 Score=353.32 Aligned_cols=204 Identities=31% Similarity=0.485 Sum_probs=176.6
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChH---HHh
Q 001371 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~---~lr 459 (1091)
++++|+++.|++.. ..++|+|+||++++|+.++|+||+|||||||+++|.|+++|++|+|.+||.++.+++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996421 25699999999999999999999999999999999999999999999999999877643 467
Q ss_pred hceeEEeccCcccc-ccHHHHhccCCC---CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD---DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~-~TIreNI~~g~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
+.++|++|+|.+|. .|+.||+.++.. ..+. +++.++++..++.+++.+.| .+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999998 699999987532 1222 34566666666666555544 47999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhccCeEEEEeCCEE
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~I 598 (1091)
+||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988763 7999999999998888999999999986
No 240
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.4e-40 Score=370.99 Aligned_cols=200 Identities=23% Similarity=0.432 Sum_probs=172.9
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccc-cHH
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIK 477 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~-TIr 477 (1091)
.++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++.. ....+|++++||||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 479999999999999999999999999999999999999999999999999876 345678899999999999875 999
Q ss_pred HHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCC
Q 001371 478 DNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1091)
Q Consensus 478 eNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tS 551 (1091)
||+.+... ..+ ++++.++++..++.+... + ...+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-------R----PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-------C----chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99986421 112 234556666666654332 2 335799999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 552 ALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 552 aLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+|++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999998875 47899999999999865 999999999999999999998754
No 241
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=5.3e-40 Score=362.00 Aligned_cols=225 Identities=27% Similarity=0.443 Sum_probs=184.6
Q ss_pred EEEEeEEEECCCC------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh--
Q 001371 384 IELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-- 455 (1091)
Q Consensus 384 I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~-- 455 (1091)
|+++||+|+|+.. .++++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.+||.++..++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 7899999999631 13579999999999999999999999999999999999999999999999999988765
Q ss_pred -HHHhhceeEEeccCc--cc-cccHHHHhccCCC---CCCHHHHHHHHHHcccHHHHhhCCCCccc-ccccCCCCCChHH
Q 001371 456 -QWIRKKIGLVSQEPV--LF-TGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQ 527 (1091)
Q Consensus 456 -~~lr~~ia~V~Q~~~--Lf-~~TIreNI~~g~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T-~vge~G~~LSGGQ 527 (1091)
..+|+.++|++|++. ++ +.|++||+.+... ..+.++ ....+++.+..+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 356889999999983 33 4799999865311 111111 111223344443 5543 4456677899999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecCh
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 604 (1091)
|||++||||++.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999988753 7899999999999974 999999999999999999
Q ss_pred hHHhcCCCchhH
Q 001371 605 SKLVEDPEGAYS 616 (1091)
Q Consensus 605 ~eL~~~~~~~y~ 616 (1091)
+|+... .+.|.
T Consensus 237 ~~~~~~-~~~~~ 247 (268)
T PRK10419 237 GDKLTF-SSPAG 247 (268)
T ss_pred hhccCC-CCHHH
Confidence 999865 44443
No 242
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=6e-40 Score=374.64 Aligned_cols=209 Identities=31% Similarity=0.503 Sum_probs=178.4
Q ss_pred eEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC----hHHHhhcee
Q 001371 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWIRKKIG 463 (1091)
Q Consensus 388 ~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~----~~~lr~~ia 463 (1091)
|++++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ....|++++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78999963 23 4 999999999999999999999999999999999999999999999986542 345678999
Q ss_pred EEeccCccccc-cHHHHhccCCCCCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGKDDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
||+|++.+|.. |++||+.|+..... ++++.++++..++.+...+ ...+||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGR-----------LPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHH
Confidence 99999999974 99999998743222 2235566666655544433 34689999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcCCC
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~~ 612 (1091)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++.
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 99999999999999999999999999988754 7899999999998865 99999999999999999999987643
No 243
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-40 Score=358.79 Aligned_cols=203 Identities=27% Similarity=0.446 Sum_probs=173.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ .++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999963 4699999999999999999999999999999999999999999999999988643 24699
Q ss_pred EEeccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
|++|++.+|. .|++||+.++.. ..+ ++++.++++..++.+... ....+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999887 699999987521 112 234556666666654433 3446899999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEe--CCEEeeecChh
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIH--RGKIVEKGTHS 605 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~--~G~Ive~Gt~~ 605 (1091)
++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|+ +|+|++.++.+
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999998863 37999999999998754 99999998 59999988764
No 244
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.1e-39 Score=357.33 Aligned_cols=213 Identities=30% Similarity=0.434 Sum_probs=180.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCcEEEECCccccCCChHHH
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQWI 458 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~----~~G~I~idg~~i~~~~~~~l 458 (1091)
.|+++|++++| + .++|+|+||+|++||+++|+||+|||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 3699999999999999999999999999999999999999 999999999988632 223
Q ss_pred hhceeEEeccCc-ccc--ccHHHHhcc-----CCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 459 RKKIGLVSQEPV-LFT--GSIKDNIAY-----GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 459 r~~ia~V~Q~~~-Lf~--~TIreNI~~-----g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
++.++||+|++. .|. .|+.+|+.+ +. ...++++.++++..++.+. ++.++.....||||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qr 148 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGK-PADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQR 148 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCC-ChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHH
Confidence 467999999984 454 588888753 32 2344567777777766432 224455667899999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHH
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
++|||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999988753 789999999999986 5999999999999999999999
Q ss_pred hcC
Q 001371 608 VED 610 (1091)
Q Consensus 608 ~~~ 610 (1091)
.+.
T Consensus 229 ~~~ 231 (254)
T PRK10418 229 FNA 231 (254)
T ss_pred hhC
Confidence 765
No 245
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-40 Score=345.62 Aligned_cols=191 Identities=23% Similarity=0.387 Sum_probs=164.2
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCcEEEECCccccCCChHHH
Q 001371 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWI 458 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~---~~~G~I~idg~~i~~~~~~~l 458 (1091)
.+.++||+|.|+.. .+.++|+|+||+|++||+++|+||+|||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999853 35679999999999999999999999999999999999999 89999999999988765 456
Q ss_pred hhceeEEeccCcccc-ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHh
Q 001371 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1091)
Q Consensus 459 r~~ia~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAl 537 (1091)
|++++|++|++.+|. .|++|||.++.. . . ..+....||||||||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~-~-----~----------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR-C-----K----------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh-h-----c----------------------cccchhhCCHHHHHHHHHHHHH
Confidence 789999999998887 499999986531 0 0 1234457999999999999999
Q ss_pred hcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccC-chhh-hccCeEEEEeCCEEeeec
Q 001371 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHR-LSTV-RNADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 538 l~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHr-ls~i-~~aD~Iivl~~G~Ive~G 602 (1091)
+++|+++||||||++||+++++.+.+.|+++.+ ++|+|+++|+ ...+ +.||+|++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 4576776554 5555 569999999999998765
No 246
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-40 Score=336.61 Aligned_cols=170 Identities=34% Similarity=0.640 Sum_probs=157.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
++++|++++|++ .++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 468999999963 36999999999999999999999999999999999999999999999999988766 67788999
Q ss_pred EEeccCccccc-cHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC
Q 001371 464 LVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1091)
Q Consensus 464 ~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~ 542 (1091)
||+|++.+|.+ |++||+. ||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999999886 9999984 99999999999999999999
Q ss_pred EEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEE
Q 001371 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKI 598 (1091)
Q Consensus 543 IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~I 598 (1091)
|+||||||++||+.+.+.+.+.|+++. +++|+|++||+.+.+. .||+|++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999998875 4689999999999887 5999999999974
No 247
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-39 Score=334.00 Aligned_cols=171 Identities=53% Similarity=0.927 Sum_probs=161.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++. ..++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999743 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCE
Q 001371 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1091)
Q Consensus 464 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~I 543 (1091)
|++|++.+|+.|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCE
Q 001371 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1091)
Q Consensus 544 liLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~ 597 (1091)
+||||||++||+.+.+.+.+.|+++.+++|+|++||++..+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999998877899999999999998899999999985
No 248
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-39 Score=336.54 Aligned_cols=172 Identities=42% Similarity=0.678 Sum_probs=159.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC--hHHHhhc
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--LQWIRKK 461 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~--~~~lr~~ 461 (1091)
|+++|++++|++ +++|+|+||++++||.++|+||+|||||||+++|+|+++|++|+|.+||.++.+++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 478999999963 46999999999999999999999999999999999999999999999999998876 5678889
Q ss_pred eeEEeccCcccc-ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 462 ia~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
++|++|+|.+|. .|++||+.+. ||||||||++||||++++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 999999999886 5999999764 999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCE
Q 001371 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGK 597 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~ 597 (1091)
|+++||||||++||+.+...+.+.|+++.+ ++|+|++||++..+. .||+|++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999988764 589999999999998 599999999985
No 249
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-40 Score=341.23 Aligned_cols=224 Identities=35% Similarity=0.597 Sum_probs=195.2
Q ss_pred cEEEEeEEEECCCCCC---------------------CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCc
Q 001371 383 DIELRDVYFSYPARPN---------------------EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~---------------------~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G 441 (1091)
.|+++||+.-+..+++ .--++|+||+|+.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4788888877753321 1237899999999999999999999999999999999999999
Q ss_pred EEEECCccccCCChHHHh----hceeEEeccCcccc-ccHHHHhccCCC-----C-CCHHHHHHHHHHcccHHHHhhCCC
Q 001371 442 EVLIDGINLKEFQLQWIR----KKIGLVSQEPVLFT-GSIKDNIAYGKD-----D-ATTEEIRVATELANAAKFIDKLPQ 510 (1091)
Q Consensus 442 ~I~idg~~i~~~~~~~lr----~~ia~V~Q~~~Lf~-~TIreNI~~g~~-----~-~~~~~i~~a~~~a~l~~~i~~lp~ 510 (1091)
+|++||.|+..++.++|| +++++|+|.--||. .||.||..||.+ . ..+++..++++.++|++|=.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999988775 47999999998885 799999999953 1 134556788999999999888874
Q ss_pred CcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchh-hhcc
Q 001371 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLST-VRNA 587 (1091)
Q Consensus 511 G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~-i~~a 587 (1091)
.||||+|||+.|||||..||+||++|||+|||||--...+|+-|.++- -+||+|+|||.|.. ++-.
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 699999999999999999999999999999999999999998886643 37999999999975 6789
Q ss_pred CeEEEEeCCEEeeecChhHHhcCCCchhHH
Q 001371 588 DMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1091)
Q Consensus 588 D~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~ 617 (1091)
|||..|+||+|++.||++|++.++...|-.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 999999999999999999999886655544
No 250
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.5e-39 Score=359.87 Aligned_cols=214 Identities=31% Similarity=0.554 Sum_probs=188.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++.+|+. ++.+|+||||+|++|+.+|++||+|||||||+++|+|++.|++|+|.++|.|...- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999962 35799999999999999999999999999999999999999999999999988766 77889999
Q ss_pred eEEeccCccccc-cHHHHhccCC-----C-CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGK-----D-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~-----~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
|||||+|.++.. |++||+.|.. + ...++++.++++..+|.+.- + .+-..||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~----~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------N----KKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------C----cchhhcCHHHHHHHHHHH
Confidence 999999998864 9999998742 2 23356788888888776521 2 234579999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-C-CeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV-N-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~-~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||+.+|++|||||||++||+.+...+.+.|+++.+ + +|+++.||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998875 4 699999999999887 999999999999999999997654
No 251
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.5e-39 Score=354.87 Aligned_cols=224 Identities=28% Similarity=0.451 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcc-----ccCCChHH
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-----LKEFQLQW 457 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~-----i~~~~~~~ 457 (1091)
.|+++|++++|++ .++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 468999999999999999999999999999999999999999999999988 77666553
Q ss_pred ----HhhceeEEeccCc--c-ccccHHHHhccCC---CCCCHHHHHHHHHHcccHHHHhhCCCCcc-cccccCCCCCChH
Q 001371 458 ----IRKKIGLVSQEPV--L-FTGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGG 526 (1091)
Q Consensus 458 ----lr~~ia~V~Q~~~--L-f~~TIreNI~~g~---~~~~~~~i~~a~~~a~l~~~i~~lp~G~~-T~vge~G~~LSGG 526 (1091)
+++.++|++|++. + +..|+.+|+.+.. ......+.. ..+.++++.+. ++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~l~--l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIR-----AAAHDWLEEVE--IDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHH-----HHHHHHHHHcC--CChhhhhcCchhcCHH
Confidence 3467999999984 2 3458889985321 000111111 12345555553 32 4556677899999
Q ss_pred HHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecC
Q 001371 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 527 QkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt 603 (1091)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||++..+. .||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988643 789999999999987 499999999999999999
Q ss_pred hhHHhcCCCchhH
Q 001371 604 HSKLVEDPEGAYS 616 (1091)
Q Consensus 604 ~~eL~~~~~~~y~ 616 (1091)
++++..++...|.
T Consensus 233 ~~~~~~~~~~~~~ 245 (253)
T TIGR02323 233 TDQVLDDPQHPYT 245 (253)
T ss_pred HHHHhcCCCCHHH
Confidence 9998765333343
No 252
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.2e-39 Score=330.32 Aligned_cols=164 Identities=30% Similarity=0.490 Sum_probs=151.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ ++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 478999999963 247999999999999999999999999999999999999999999999983 5899
Q ss_pred EEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCE
Q 001371 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1091)
Q Consensus 464 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~I 543 (1091)
|++|++.++++|++|||.++ ....||||||||++||||++++|++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999864 2468999999999999999999999
Q ss_pred EEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCE
Q 001371 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1091)
Q Consensus 544 liLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~ 597 (1091)
+||||||++||+++.+.+.+.|+++ ++|+|++||+++....||+|++|++|-
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999999999999999886 689999999999888999999998763
No 253
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.1e-39 Score=348.35 Aligned_cols=205 Identities=26% Similarity=0.435 Sum_probs=178.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
++++|++++|++ +++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999963 47999999999999999999999999999999999999999999999998875422 24799
Q ss_pred EEeccCcccc-ccHHHHhccCCC--CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 464 LVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 464 ~V~Q~~~Lf~-~TIreNI~~g~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
|++|++.+|. .|++||+.++.. ..+++++.++++..++.+.... ...+||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 699999986421 2346677788888777665433 2357999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhH
Q 001371 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~e 606 (1091)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||++..+. .||+|++|++|+|++.|+.++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999998875 4789999999999885 599999999999999998764
No 254
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-39 Score=326.77 Aligned_cols=219 Identities=26% Similarity=0.458 Sum_probs=188.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH-Hhhce
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKI 462 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~-lr~~i 462 (1091)
++++|++-.|.. ..+|++|||++++||+++++||+|+||||++++|+|+.+|.+|+|.++|.||...+++. .|.-|
T Consensus 4 L~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 4 LEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred eeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 689999999963 57999999999999999999999999999999999999999999999999999998876 56679
Q ss_pred eEEeccCccccc-cHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~ 541 (1091)
+||||.-.+|.. ||+||+.+|.-...+++.+ ...+++..+-+| -+......++.+|||||+|-+||||||..+|
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~----~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ----ERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccc----cccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 999999999975 9999999884222211111 111334455566 3566677889999999999999999999999
Q ss_pred CEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchh-hhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 542 RILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLST-VRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 542 ~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~-i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
++|+|||||.+|-|.--+.|.+.|+++.+ +.|+++|-++... ++-||+.+||++|+|+.+|+.+||.++
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999998874 5699999999886 567999999999999999999999875
No 255
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.1e-40 Score=309.77 Aligned_cols=191 Identities=29% Similarity=0.515 Sum_probs=169.4
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHH
Q 001371 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1091)
Q Consensus 398 ~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIr 477 (1091)
+.++|+|+||++.+||.++|.||||||||||++.++-+..|++|.+++.|.|+++++++.+|++|+||.|.|-||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCC----CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCC
Q 001371 478 DNIAYGK----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1091)
Q Consensus 478 eNI~~g~----~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaL 553 (1091)
||+.|.. ...+...-..-++.+++. ++.+..+-.+||||+||||||+|-|---|+||+|||+||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~----------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALP----------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCc----------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9999862 222333334444444333 45556677889999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHc--CCCeEEEEccCchh-hhccCeEEEEeCCEE
Q 001371 554 DAESEKVVQEALDRIM--VNRTTVIVAHRLST-VRNADMIAVIHRGKI 598 (1091)
Q Consensus 554 D~~te~~i~~~l~~~~--~~~T~I~ItHrls~-i~~aD~Iivl~~G~I 598 (1091)
|+.+.+.|.+.|.++. ++..++-|||.... +++||+++-+..|++
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999998876 56789999999877 999999999999987
No 256
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-39 Score=344.61 Aligned_cols=200 Identities=32% Similarity=0.486 Sum_probs=168.5
Q ss_pred EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCC----ChHHHhh
Q 001371 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQWIRK 460 (1091)
Q Consensus 385 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~----~~~~lr~ 460 (1091)
++ |++++|++ ..+ |+||+|++ |+++|+||+|||||||+++|+|+++|++|+|.++|.++.+. +...+|+
T Consensus 3 ~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 45 89999964 234 99999999 99999999999999999999999999999999999988643 2345688
Q ss_pred ceeEEeccCcccc-ccHHHHhccCCCCCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~-~TIreNI~~g~~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
+++||+|++.+|. .|++||+.++....+ ++++.++++..++ +........+||||||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-----------DHLLNRYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCC-----------HhHhhcCcccCCHHHHHHHHHHH
Confidence 9999999999986 599999987643222 2234444444444 33344566789999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeec
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~G 602 (1091)
|++++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988753 789999999999885 59999999999999876
No 257
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.5e-39 Score=339.07 Aligned_cols=183 Identities=29% Similarity=0.508 Sum_probs=162.4
Q ss_pred cEEEEeEEEECCCC---CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCcEEEECCccccCCChHH
Q 001371 383 DIELRDVYFSYPAR---PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQW 457 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~---~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~--~~~~G~I~idg~~i~~~~~~~ 457 (1091)
.|+++|++|+|++. .++++|+|+||+|++||+++|+||+|||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999741 0257999999999999999999999999999999999999 9999999999998875 36
Q ss_pred HhhceeEEeccCcccc-ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 458 lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
+|++++|++|++.+|. .|++||+.++.. . . .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~------~----~------------------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK------L----R------------------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH------h----c------------------------cCCHHHHHHHHHHHH
Confidence 7889999999999887 599999975321 0 0 799999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCch-hh-hccCeEEEEeCCEEeeec
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-TV-RNADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls-~i-~~aD~Iivl~~G~Ive~G 602 (1091)
++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+ ..||+|++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999998875 4799999999996 44 459999999999998764
No 258
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-39 Score=355.67 Aligned_cols=209 Identities=25% Similarity=0.427 Sum_probs=176.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHh-hc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr-~~ 461 (1091)
.|+++|++++|++ ++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++.. ..+ +.
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNL 79 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccce
Confidence 4899999999963 3479999999999999999999999999999999999999999999999988752 233 46
Q ss_pred eeEEeccCcc---ccccHHHHhccCCC----------CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 462 IGLVSQEPVL---FTGSIKDNIAYGKD----------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 462 ia~V~Q~~~L---f~~TIreNI~~g~~----------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
++|+||+|.+ +..++++|+.++.. ...++++.++++..++.+... +.+ .+||||||
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~~----~~LSgG~~ 148 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-------RQI----GELSGGQK 148 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-------CCc----ccCCHHHH
Confidence 9999999865 45689999976421 012344566777777765543 333 46999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~e 606 (1091)
||++||||++++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+++++ +|++++.|++++
T Consensus 149 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 99999999999999999999999999999999999998875 4789999999998874 59999777 899999999999
Q ss_pred Hhc
Q 001371 607 LVE 609 (1091)
Q Consensus 607 L~~ 609 (1091)
+..
T Consensus 228 ~~~ 230 (272)
T PRK15056 228 TFT 230 (272)
T ss_pred ccC
Confidence 863
No 259
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.1e-39 Score=354.73 Aligned_cols=212 Identities=25% Similarity=0.399 Sum_probs=170.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCcEEEECCccccCCChHHHh-h
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWIR-K 460 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~--~~~~G~I~idg~~i~~~~~~~lr-~ 460 (1091)
|+++|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|+|++ +|++|+|.+||.++..++....+ .
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 689999999963 46999999999999999999999999999999999994 79999999999999888876655 5
Q ss_pred ceeEEeccCccccc-cHHHHhccC-------CCC--CCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChH
Q 001371 461 KIGLVSQEPVLFTG-SIKDNIAYG-------KDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~~-TIreNI~~g-------~~~--~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 526 (1091)
.++|++|++.++.. |..+|+.+. ... .+. +.+.+.++.. .+|+++.+... ...||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~--~~~LS~G 149 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL-------KMPEDLLTRSV--NVGFSGG 149 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc-------CCChhhcccCC--CCCCCHH
Confidence 79999999987764 444443221 110 011 1111222221 34444444322 1369999
Q ss_pred HHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEccCchhhhc--cCeEEEEeCCEEeeecC
Q 001371 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 527 QkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~--aD~Iivl~~G~Ive~Gt 603 (1091)
||||++||||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|+|++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999887654 6899999999999887 89999999999999999
Q ss_pred hhHH
Q 001371 604 HSKL 607 (1091)
Q Consensus 604 ~~eL 607 (1091)
+++.
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 8854
No 260
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.3e-39 Score=336.17 Aligned_cols=172 Identities=24% Similarity=0.459 Sum_probs=157.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh-HHHhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~-~~lr~~ 461 (1091)
-|+++|++++| +|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999988 8999999999999999999999999999999999999999999999999988874 456789
Q ss_pred eeEEeccC----ccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHh
Q 001371 462 IGLVSQEP----VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1091)
Q Consensus 462 ia~V~Q~~----~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAl 537 (1091)
++|++|++ .+++.|++||+.++.+ ||||||||++||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHH
Confidence 99999995 3455799999987531 999999999999999
Q ss_pred hcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEE
Q 001371 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1091)
Q Consensus 538 l~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~I 598 (1091)
+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998874 47899999999998876 999999999975
No 261
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-39 Score=338.96 Aligned_cols=182 Identities=26% Similarity=0.450 Sum_probs=161.5
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCcEEEECCccccCCChHHHh
Q 001371 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWIR 459 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~--~~~~G~I~idg~~i~~~~~~~lr 459 (1091)
.|+++|++|+|+++. ++++|+|+||++++||+++|+||+|||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997421 257999999999999999999999999999999999986 489999999999885 5678
Q ss_pred hceeEEeccCccccc-cHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
++++|++|++.+|.. |++||+.++.. ++ +||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 899999999988875 99999986420 00 89999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchh--hhccCeEEEEeC-CEEeeec
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIHR-GKIVEKG 602 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~--i~~aD~Iivl~~-G~Ive~G 602 (1091)
++|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++. ...||+|++|++ |+|++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999998865 47899999999983 567999999999 9999875
No 262
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=9.1e-39 Score=350.35 Aligned_cols=212 Identities=25% Similarity=0.437 Sum_probs=177.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCcEEEECCccccCCChHHHhh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWIRK 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~--~~~~~G~I~idg~~i~~~~~~~lr~ 460 (1091)
-|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+ ++|++|+|.++|.++.+++....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999963 4699999999999999999999999999999999998 6899999999999999888766554
Q ss_pred -ceeEEeccCccccc-cHHHHhccCCC---------CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCC-CCC
Q 001371 461 -KIGLVSQEPVLFTG-SIKDNIAYGKD---------DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGT-QLS 524 (1091)
Q Consensus 461 -~ia~V~Q~~~Lf~~-TIreNI~~g~~---------~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~-~LS 524 (1091)
.++|++|++.+|.+ |+++|+.++.. +.+ .+++.++++.+++.+ +.+..... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCC
Confidence 58999999999885 79999876421 111 123344555555431 11222222 499
Q ss_pred hHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc--cCeEEEEeCCEEeee
Q 001371 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEK 601 (1091)
Q Consensus 525 GGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~--aD~Iivl~~G~Ive~ 601 (1091)
||||||++||||++++|+|+||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999998875 47999999999998875 899999999999999
Q ss_pred cChhHH
Q 001371 602 GTHSKL 607 (1091)
Q Consensus 602 Gt~~eL 607 (1091)
|+++++
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 999844
No 263
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.9e-39 Score=342.28 Aligned_cols=194 Identities=29% Similarity=0.477 Sum_probs=165.3
Q ss_pred EEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh----HHHhhc
Q 001371 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIRKK 461 (1091)
Q Consensus 386 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~----~~lr~~ 461 (1091)
++|++++|++ +++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.++|.++..++. ...|+.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999963 469999999999999999999999999999999999999999999999999765542 245778
Q ss_pred eeEEeccCcccc-ccHHHHhccCCCC--C----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--A----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 462 ia~V~Q~~~Lf~-~TIreNI~~g~~~--~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
++||+|++.+|. .|++||+.++... . .++++.++++..++.++.. ....+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-----------QKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-----------CChhhCCHHHHHHHHHH
Confidence 999999999997 6999999875321 1 2345566666666654433 23457999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEE
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI 593 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl 593 (1091)
|||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999998875 478999999999988889999885
No 264
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=8.3e-39 Score=336.99 Aligned_cols=185 Identities=29% Similarity=0.499 Sum_probs=163.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCcEEEECCccccCCChHHH-hh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-RK 460 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~--~~~~~G~I~idg~~i~~~~~~~l-r~ 460 (1091)
++++|++++|++ +++|+|+||++++||.++|+||+|||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999963 4799999999999999999999999999999999999 58999999999999998887654 55
Q ss_pred ceeEEeccCccccc-cHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
+++|++|+|.+|++ |+++|+ .. ...+||||||||++||||+++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~-----------~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RY-----------VNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hh-----------ccccCCHHHHHHHHHHHHHhc
Confidence 69999999999886 555554 00 114799999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEccCchhhh--ccCeEEEEeCCEEeeecChhHHh
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR--NADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~--~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
+|+|+||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999999988753 789999999999988 69999999999999999 55554
No 265
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.4e-38 Score=346.21 Aligned_cols=208 Identities=26% Similarity=0.447 Sum_probs=180.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 3889999999963 4699999999999999999999999999999999999999999999987 3479
Q ss_pred eEEeccCcccc---ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 463 GLVSQEPVLFT---GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 463 a~V~Q~~~Lf~---~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
+|++|++.++. .|+++|+.+. +..+++++.++++..++.+.+.+. ...||||||||++||||+++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-PGTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLN 137 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-ccccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhc
Confidence 99999998765 4899998764 335567888899999887766442 35799999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcCCCchhH
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~ 616 (1091)
+|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++ +|++.|+++|+.. .+.|.
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~~~~~ 214 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--HPEFI 214 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--CHHHH
Confidence 9999999999999999999999999988653 789999999999985 5999999965 7999999999864 34555
Q ss_pred HHH
Q 001371 617 QLI 619 (1091)
Q Consensus 617 ~l~ 619 (1091)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 544
No 266
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=7.7e-39 Score=345.37 Aligned_cols=206 Identities=30% Similarity=0.422 Sum_probs=169.6
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCcEEEECCccccCCChHHHhhceeEEeccCc-ccc--
Q 001371 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV-LFT-- 473 (1091)
Q Consensus 401 vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~----~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~-Lf~-- 473 (1091)
+|+|+||+|++|++++|+||+|||||||+++|+|+++| ++|+|.+||.++... +..++.++||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998754 233468999999995 444
Q ss_pred ccHHHHhccCC-----CC-CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEee
Q 001371 474 GSIKDNIAYGK-----DD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547 (1091)
Q Consensus 474 ~TIreNI~~g~-----~~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLD 547 (1091)
.|++||+.+.. +. ..++++.++++.+++.+ + ++.......+||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 58999986431 11 11234556666655531 1 13344556789999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcCCCchhH
Q 001371 548 EATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1091)
Q Consensus 548 E~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~ 616 (1091)
|||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...+...|.
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHH
Confidence 99999999999999999988753 789999999999986 5999999999999999999999865334443
No 267
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=8.3e-39 Score=331.30 Aligned_cols=177 Identities=36% Similarity=0.613 Sum_probs=161.2
Q ss_pred EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeE
Q 001371 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1091)
Q Consensus 385 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~ 464 (1091)
+++|++|+|++ +++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.+||.++.+.+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999963 469999999999999999999999999999999999999999999999999998888888989999
Q ss_pred EeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEE
Q 001371 465 VSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1091)
Q Consensus 465 V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~Il 544 (1091)
++| +++..++.+++.+ ...+||||||||++||||++++|+++
T Consensus 78 ~~q---------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 78 VPQ---------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred HHH---------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999 6777777766543 34689999999999999999999999
Q ss_pred EeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhh-hccCeEEEEeCCEEeeec
Q 001371 545 LLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 545 iLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~G 602 (1091)
||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+ +.||++++|++|++++.|
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999988754 78999999999997 569999999999998754
No 268
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.7e-38 Score=344.58 Aligned_cols=206 Identities=24% Similarity=0.414 Sum_probs=174.9
Q ss_pred EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeE
Q 001371 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1091)
Q Consensus 385 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~ 464 (1091)
+++|++++ .+|+|+||+|++||+++|+||+|||||||+++|+|+++ .+|+|.+||.++...+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 56777774 27999999999999999999999999999999999986 49999999999998888888889999
Q ss_pred EeccCc-cccccHHHHhccCCCC-CC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 465 VSQEPV-LFTGSIKDNIAYGKDD-AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 465 V~Q~~~-Lf~~TIreNI~~g~~~-~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
++|++. .++.|++||+.++.+. .+ ++++.++++..++.+. .......||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDK-----------LGRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHh
Confidence 999985 5568999999987432 11 2344555555555433 33345689999999999999999
Q ss_pred c-------CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhc
Q 001371 539 K-------DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 539 ~-------~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
+ +|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 7 679999999999999999999999998875 478999999999966 5699999999999999999998864
No 269
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.1e-38 Score=362.40 Aligned_cols=226 Identities=33% Similarity=0.551 Sum_probs=189.7
Q ss_pred cEEEEeEEEECCCC--------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcc--ccC
Q 001371 383 DIELRDVYFSYPAR--------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN--LKE 452 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~--------~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~--i~~ 452 (1091)
-++++|++..|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999742 12467999999999999999999999999999999999999999999999987 333
Q ss_pred CChHHHhhceeEEeccCccc---cccHHHHhccCC----C---CCCHHHHHHHHHHcccHH-HHhhCCCCcccccccCCC
Q 001371 453 FQLQWIRKKIGLVSQEPVLF---TGSIKDNIAYGK----D---DATTEEIRVATELANAAK-FIDKLPQGIDTLVGEHGT 521 (1091)
Q Consensus 453 ~~~~~lr~~ia~V~Q~~~Lf---~~TIreNI~~g~----~---~~~~~~i~~a~~~a~l~~-~i~~lp~G~~T~vge~G~ 521 (1091)
-+...+|+++-+|+|||+-. ..||+++|.-.- + ....+++.+.++.++|.+ +..+-| .
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-----------~ 428 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP-----------H 428 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-----------h
Confidence 33556788999999999732 369999986321 1 112234666677777765 444444 5
Q ss_pred CCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEE
Q 001371 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1091)
Q Consensus 522 ~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~I 598 (1091)
.||||||||+||||||..+|+++|+||||||||+.+...|.+.|+++.+ |-|.|+|||.++.+++ ||+|+||++|+|
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 7999999999999999999999999999999999999999999887653 6899999999999987 999999999999
Q ss_pred eeecChhHHhcCCCchhHHHH
Q 001371 599 VEKGTHSKLVEDPEGAYSQLI 619 (1091)
Q Consensus 599 ve~Gt~~eL~~~~~~~y~~l~ 619 (1091)
||.|+.+++.+.+...|.+..
T Consensus 509 VE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 509 VEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred EEeCCHHHHhcCCCChHHHHH
Confidence 999999999988777777654
No 270
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-38 Score=387.18 Aligned_cols=224 Identities=28% Similarity=0.448 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCC--------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC
Q 001371 383 DIELRDVYFSYPARP--------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~--------~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~ 454 (1091)
-++++|++++|+.+. ..++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996311 246999999999999999999999999999999999999999999999999998776
Q ss_pred hH---HHhhceeEEeccCc--ccc-ccHHHHhccCC---CCCC----HHHHHHHHHHcccH-HHHhhCCCCcccccccCC
Q 001371 455 LQ---WIRKKIGLVSQEPV--LFT-GSIKDNIAYGK---DDAT----TEEIRVATELANAA-KFIDKLPQGIDTLVGEHG 520 (1091)
Q Consensus 455 ~~---~lr~~ia~V~Q~~~--Lf~-~TIreNI~~g~---~~~~----~~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G 520 (1091)
.. .+|++|+||+|+|. ++. .||+||+.++. ...+ .+++.++++..++. +...+.|
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----------- 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP----------- 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----------
Confidence 43 46778999999984 664 59999997531 1011 23455666666663 3333332
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCE
Q 001371 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~ 597 (1091)
.+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 47999999999999999999999999999999999999999999988653 7899999999998865 99999999999
Q ss_pred EeeecChhHHhcCCCchhHH
Q 001371 598 IVEKGTHSKLVEDPEGAYSQ 617 (1091)
Q Consensus 598 Ive~Gt~~eL~~~~~~~y~~ 617 (1091)
|++.|+.+++..++...|.+
T Consensus 542 iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred EEEecCHHHHhcCCCCHHHH
Confidence 99999999998764555644
No 271
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.4e-38 Score=332.81 Aligned_cols=195 Identities=26% Similarity=0.381 Sum_probs=170.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
++++|++++|++ +++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999963 46999999999999999999999999999999999999999999999999987653 46788999
Q ss_pred EEeccCccc-cccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC
Q 001371 464 LVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1091)
Q Consensus 464 ~V~Q~~~Lf-~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~ 542 (1091)
|++|++.++ +.|++||+.+..+..+++++.++++..++.++... ...+||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999876 58999999887655567788888888888654322 235799999999999999999999
Q ss_pred EEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCch-hhhccCeEEEE
Q 001371 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-TVRNADMIAVI 593 (1091)
Q Consensus 543 IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls-~i~~aD~Iivl 593 (1091)
++||||||++||+.+.+.+.+.|++.. +++|+|++||+.. ....+|+++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998764 4789999999765 45678998887
No 272
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-39 Score=314.27 Aligned_cols=213 Identities=29% Similarity=0.517 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
+++++++.+|++ ...+++|+||+++.||.++|.||+||||||+++.|..++.|++|.|.+||.|....+ ...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcc
Confidence 578999999974 345899999999999999999999999999999999999999999999999998765 45788999
Q ss_pred EEeccCcccc-ccHHHHhccCCC--CC----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFT-GSIKDNIAYGKD--DA----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~-~TIreNI~~g~~--~~----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
+++-+.-|+. -|.||||.|... +. .+.++.+..+.-++.+.+ |+.+| +||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv~----~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRVG----EFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHHh----hhchhhHHHHHHHHH
Confidence 9998888886 599999987531 11 234455555555555544 34444 599999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcC
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|.+||+|++||||||+||..+.+++++-|.++.. +|++|..||-++.++ -||+|+++.+|+++..|+.+++.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999988775 899999999999998 6999999999999999999998765
No 273
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.8e-38 Score=320.21 Aligned_cols=159 Identities=33% Similarity=0.583 Sum_probs=148.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChH-HHhhce
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ-WIRKKI 462 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~-~lr~~i 462 (1091)
|+++|++++|++ .++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|+|.+||.++...+.. ..|+++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 478999999963 4699999999999999999999999999999999999999999999999999888764 567789
Q ss_pred eEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC
Q 001371 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1091)
Q Consensus 463 a~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~ 542 (1091)
+|++| ||||||||++||||++++|+
T Consensus 78 ~~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 78 AMVYQ-------------------------------------------------------LSVGERQMVEIARALARNAR 102 (163)
T ss_pred EEEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999 99999999999999999999
Q ss_pred EEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEee
Q 001371 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1091)
Q Consensus 543 IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive 600 (1091)
++||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. ||++++|++|++++
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998874 47899999999998764 99999999999975
No 274
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.6e-38 Score=378.13 Aligned_cols=213 Identities=26% Similarity=0.442 Sum_probs=182.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHh-hc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr-~~ 461 (1091)
-|+++|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999887776655 46
Q ss_pred eeEEeccCccccc-cHHHHhccCCCCC--CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 462 IGLVSQEPVLFTG-SIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~-TIreNI~~g~~~~--~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
++||+|++.+|.. |++||+.++.... .++++.++++..++.++ ......+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHHH
Confidence 9999999988875 9999999875321 12445555555554322 22234579999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhc
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
.+|+||||||||++||+.+.+.+.+.|+++. +++|+|++||++..+. .||+|++|++|+|++.|+++++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999998864 4789999999999875 499999999999999999998754
No 275
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=4.1e-38 Score=339.29 Aligned_cols=191 Identities=31% Similarity=0.462 Sum_probs=162.1
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCcccc-ccHHHHh
Q 001371 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNI 480 (1091)
Q Consensus 402 L~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~-~TIreNI 480 (1091)
|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++.+.+. ..+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 589999999999999999999999999999999999999999999999876543 2489999999987 5999999
Q ss_pred ccCC----CCCCHH----HHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCC
Q 001371 481 AYGK----DDATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1091)
Q Consensus 481 ~~g~----~~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSa 552 (1091)
.++. +..+++ ++.++++..++.+... .....||||||||++|||||+++|+++||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD-----------KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHc-----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 8752 223322 3455566665554332 23457999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHh
Q 001371 553 LDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 553 LD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998864 3789999999999875 49999999999999999876654
No 276
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-38 Score=333.67 Aligned_cols=225 Identities=28% Similarity=0.517 Sum_probs=185.0
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-C----CCcEEEECCccccCCChHH
Q 001371 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-P----QAGEVLIDGINLKEFQLQW 457 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-~----~~G~I~idg~~i~~~~~~~ 457 (1091)
++++|++.+|+... ...+++||||+|++||++||||.|||||||+.++|+|+++ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999887532 2468999999999999999999999999999999999998 3 6799999999999999875
Q ss_pred H---h-hceeEEeccCc-cccc--cH----HHHhccCCCCCC----HHHHHHHHHHcccHH---HHhhCCCCcccccccC
Q 001371 458 I---R-KKIGLVSQEPV-LFTG--SI----KDNIAYGKDDAT----TEEIRVATELANAAK---FIDKLPQGIDTLVGEH 519 (1091)
Q Consensus 458 l---r-~~ia~V~Q~~~-Lf~~--TI----reNI~~g~~~~~----~~~i~~a~~~a~l~~---~i~~lp~G~~T~vge~ 519 (1091)
+ | +.||+|+|||. =||- || .|-+.......+ .++..+.++.+++.+ -+++.|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 4 3 47999999985 2332 33 333332111101 345677777877754 344444
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeCC
Q 001371 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1091)
Q Consensus 520 G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G 596 (1091)
.+||||||||+.||-|+..+|++||-||||+|||..+.+.|.+.|+++. .+.|+|+|||++..+.. ||+|+||..|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 5899999999999999999999999999999999999999999998876 48899999999998765 9999999999
Q ss_pred EEeeecChhHHhcCCCchhHHHH
Q 001371 597 KIVEKGTHSKLVEDPEGAYSQLI 619 (1091)
Q Consensus 597 ~Ive~Gt~~eL~~~~~~~y~~l~ 619 (1091)
+|||.|+.+|+.+++.-.|.+.+
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHH
Confidence 99999999999998776776544
No 277
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.7e-38 Score=331.69 Aligned_cols=194 Identities=23% Similarity=0.371 Sum_probs=164.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 469999999999999999999999999999999999999999999999999875 3456788999
Q ss_pred EEeccCccc-cccHHHHhccCCC-CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC
Q 001371 464 LVSQEPVLF-TGSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1091)
Q Consensus 464 ~V~Q~~~Lf-~~TIreNI~~g~~-~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~ 541 (1091)
|++|++.++ ..|++||+.++.. ...++++.++++..++.+. .+..+ .+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-------IDYPC----GLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-------hhCCh----hhcCHHHHHHHHHHHHHhcCC
Confidence 999999986 5799999998631 1223345555555544332 23333 469999999999999999999
Q ss_pred CEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEE
Q 001371 542 RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAV 592 (1091)
Q Consensus 542 ~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iiv 592 (1091)
++|||||||++||+.+...+.+.|+++. +++|+|++||+...+.+||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999998863 57899999999999999997654
No 278
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.3e-36 Score=396.35 Aligned_cols=207 Identities=26% Similarity=0.409 Sum_probs=169.5
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CcEEEECCccccCCChHHHhhceeEEeccCcccc-c
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-G 474 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~---~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~-~ 474 (1091)
..+|+|+|+.|+||++++|+||+|||||||+++|.|.++|+ +|+|.+||+++.+... |+.++||+|++.++. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcC
Confidence 46899999999999999999999999999999999999998 9999999999876543 778999999987775 5
Q ss_pred cHHHHhccCCC------------CCCHH----------HHH---HHHHHcc------cHHHHh--hCCCCcccccccCC-
Q 001371 475 SIKDNIAYGKD------------DATTE----------EIR---VATELAN------AAKFID--KLPQGIDTLVGEHG- 520 (1091)
Q Consensus 475 TIreNI~~g~~------------~~~~~----------~i~---~a~~~a~------l~~~i~--~lp~G~~T~vge~G- 520 (1091)
||+||+.|+.. +.+.+ ++. +++...+ .++.++ .|.+-.||.||+..
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987521 01111 111 1111110 122333 34555689998754
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCch--hhhccCeEEEEeCC
Q 001371 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLS--TVRNADMIAVIHRG 596 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls--~i~~aD~Iivl~~G 596 (1091)
..||||||||++||||++.+|++++|||||++||+.+...+.+.|+++. .++|+|+++|+++ ....+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 5899999999999999999999999999999999999999999999874 4789999999973 55679999999999
Q ss_pred EEeeecChhHHh
Q 001371 597 KIVEKGTHSKLV 608 (1091)
Q Consensus 597 ~Ive~Gt~~eL~ 608 (1091)
+++.+|+.+++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999999886
No 279
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.1e-38 Score=331.36 Aligned_cols=195 Identities=23% Similarity=0.348 Sum_probs=169.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.... ..+|++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999963 46999999999999999999999999999999999999999999999999987654 45678899
Q ss_pred EEeccCcccc-ccHHHHhccCCCC---CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 464 LVSQEPVLFT-GSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 464 ~V~Q~~~Lf~-~TIreNI~~g~~~---~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
|++|++.++. .|++||+.++.+. .+++++.++++..++.++..+ ....||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhc
Confidence 9999998876 6999999876432 345677888888888765432 235799999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEE
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVI 593 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl 593 (1091)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998764 47899999999999955 5677766
No 280
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-38 Score=376.72 Aligned_cols=216 Identities=24% Similarity=0.429 Sum_probs=178.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCcEEEECCccccCCChHH-Hh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQW-IR 459 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~--~~G~I~idg~~i~~~~~~~-lr 459 (1091)
-|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 3899999999963 4799999999999999999999999999999999999996 8999999999998777654 46
Q ss_pred hceeEEeccCcccc-ccHHHHhccCCCC-----CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~-~TIreNI~~g~~~-----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
++++||+|++.+|. .|++|||.++... .+.++..+. +.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR-----AQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 78999999998886 4999999986421 122222111 12223332 22222333446799999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHh
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
||||+.+|+|||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999998864 47899999999998864 9999999999999999988764
No 281
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.1e-38 Score=388.07 Aligned_cols=218 Identities=24% Similarity=0.385 Sum_probs=181.3
Q ss_pred cEEEEeEEEECCCC------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CcEEEECCccccCC
Q 001371 383 DIELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEF 453 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~---~G~I~idg~~i~~~ 453 (1091)
+++|.++. +++.. .++++|+|+|+++++||.+||+||+|||||||+++|.|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 45666665 54322 2568999999999999999999999999999999999999885 799999999875
Q ss_pred ChHHHhhceeEEeccCcccc-ccHHHHhccCCC-----CCCHHHHHHHHHHcccHHHHhh--CCCCcccccccC--CCCC
Q 001371 454 QLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD-----DATTEEIRVATELANAAKFIDK--LPQGIDTLVGEH--GTQL 523 (1091)
Q Consensus 454 ~~~~lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~-----~~~~~~i~~a~~~a~l~~~i~~--lp~G~~T~vge~--G~~L 523 (1091)
...+|+.++||+|++++++ .||+|||.|+.. +.+.++.. ..+++.++. |++..||.||+. +..|
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~~L 167 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKR-----ERVDEVLQALGLRKCANTRIGVPGRVKGL 167 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHH-----HHHHHHHHHcCchhcCcCccCCCCCCCCc
Confidence 4568899999999999996 599999988632 12222211 112333443 455779999984 4789
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCch--hhhccCeEEEEeCCEEee
Q 001371 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS--TVRNADMIAVIHRGKIVE 600 (1091)
Q Consensus 524 SGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls--~i~~aD~Iivl~~G~Ive 600 (1091)
|||||||++|||||+++|+|++||||||+||+.+...+.+.|+++. +++|+|+++|+++ ..+.+|+|++|++|++++
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 9999999999999999999999999999999999999999998875 4799999999996 367899999999999999
Q ss_pred ecChhHHhc
Q 001371 601 KGTHSKLVE 609 (1091)
Q Consensus 601 ~Gt~~eL~~ 609 (1091)
+|+++|+.+
T Consensus 248 ~G~~~~~~~ 256 (617)
T TIGR00955 248 LGSPDQAVP 256 (617)
T ss_pred ECCHHHHHH
Confidence 999999853
No 282
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-38 Score=378.48 Aligned_cols=213 Identities=21% Similarity=0.368 Sum_probs=178.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH-Hhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~-lr~~ 461 (1091)
-|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|.++...+... .|++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 3899999999963 46999999999999999999999999999999999999999999999999998877654 3467
Q ss_pred eeEEeccCccccc-cHHHHhccCCCC---------CCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 462 IGLVSQEPVLFTG-SIKDNIAYGKDD---------ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~-TIreNI~~g~~~---------~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
++||+|++.+|.. |++||+.++... .+. +++.++++..++. +-.+. ...+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-------~~~~~----~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-------VDLDE----KVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-------CCccc----chhhCCHHH
Confidence 9999999988875 999999876310 011 2233344433332 22233 335799999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChh
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~ 605 (1091)
|||++|||||+.+|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999998864 4789999999999986 49999999999999999998
Q ss_pred HHhc
Q 001371 606 KLVE 609 (1091)
Q Consensus 606 eL~~ 609 (1091)
++..
T Consensus 231 ~~~~ 234 (510)
T PRK09700 231 DVSN 234 (510)
T ss_pred hCCH
Confidence 8753
No 283
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=8.4e-38 Score=338.26 Aligned_cols=192 Identities=28% Similarity=0.455 Sum_probs=159.0
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEe-ccCccc-cccH
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS-QEPVLF-TGSI 476 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~-Q~~~Lf-~~TI 476 (1091)
+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.+. ...+|++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 346778999997 666676 5799
Q ss_pred HHHhccCCC--CCCHHH----HHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCC
Q 001371 477 KDNIAYGKD--DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1091)
Q Consensus 477 reNI~~g~~--~~~~~~----i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~t 550 (1091)
+||+.++.. ..+.++ +.++++..++.+ ..++.+ ..||||||||++||||++.+|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEE-------LLDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------HhcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999976431 123332 233344444332 234443 469999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeec
Q 001371 551 SALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 551 SaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 602 (1091)
++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999988753 6899999999998765 9999999999998765
No 284
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=4.2e-35 Score=327.74 Aligned_cols=453 Identities=15% Similarity=0.192 Sum_probs=299.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001371 127 WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEV---VGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAF-IK 202 (1091)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l---~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 202 (1091)
......+...++-+.++++.++ ...||.-....+.+ =.|++.|+++.-..+......++.+.+.++.....++ ..
T Consensus 146 ~~~L~Lr~R~~ltk~lh~~Y~k-~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~ 224 (659)
T KOG0060|consen 146 TNELYLRFRKNLTKYLHRLYFK-GFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESA 224 (659)
T ss_pred HhhhHhHHHHHHHHHHHHHHhc-cceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhc
Confidence 3334445555555555544443 33344222112222 2589999999988877766666666555554444343 35
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHH---
Q 001371 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKS--- 279 (1091)
Q Consensus 203 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~--- 279 (1091)
+|.....++.-+.+-.++.+.+.+.+.+...++++..++.--.-.+...|.+.|..|+.++.+........+...+.
T Consensus 225 g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~ 304 (659)
T KOG0060|consen 225 GWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRE 304 (659)
T ss_pred CcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHH
Confidence 66554555555555566666676667777666666667776666778889999999999987765544444333332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 001371 280 -GVQEGLAAGIGLGMVMLIVFCSYALS---VWYGGKLILEEGYNGGQVVNVMVA----VLTGSMSLGEASPCLSAFGAGQ 351 (1091)
Q Consensus 280 -~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~l~~~~~~t~g~l~~~~~~----~~~~~~~l~~~~~~~~~~~~~~ 351 (1091)
.........+...+-.+...+.++++ ++.|. ..+.+++..+...+.. ++.+...++.+......+.+-.
T Consensus 305 l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h---~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~ls 381 (659)
T KOG0060|consen 305 LMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGH---VYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLS 381 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeEEeeeeeccc---ccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 22222111111111111111111111 11111 2345566666554322 2222334444444444444444
Q ss_pred HHHHHHHHHhccCCCC-------------CcC-------CCCCcccCCCCCcEEEEeEEEECCCCCCCccccceeEEeeC
Q 001371 352 AAAFKMFETINRKPEI-------------DAY-------DTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISS 411 (1091)
Q Consensus 352 ~~~~r~~~~~~~~~~~-------------~~~-------~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~ 411 (1091)
....|+-++.+...+. ..+ .+......+.+..|+|++|+++=|++ +..+.+|+||+|+.
T Consensus 382 Gyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~ 460 (659)
T KOG0060|consen 382 GYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPS 460 (659)
T ss_pred hHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-CceeeeeeeeEecC
Confidence 5556665554321100 000 00001112234579999999999874 44566789999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCC-------
Q 001371 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK------- 484 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~------- 484 (1091)
|+.+-|+||||||||+|++.|.|+++..+|.+.--...-. +.+=||||.|+.-.||+||-+.|..
T Consensus 461 g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~ 532 (659)
T KOG0060|consen 461 GQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDS 532 (659)
T ss_pred CCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC--------CceEEecCCCCccccchhheeeccCccccccc
Confidence 9999999999999999999999999999999975331100 3589999999999999999999872
Q ss_pred CCCCHHHHHHHHHHcccHHHHhhCCCCcccccc-cCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHH
Q 001371 485 DDATTEEIRVATELANAAKFIDKLPQGIDTLVG-EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563 (1091)
Q Consensus 485 ~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vg-e~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~ 563 (1091)
..++++++.+.++.+++.+.+++ .+|+|+++- +-...||+||+||+|.||-+|.+|++-||||+|||||.+.|..+-+
T Consensus 533 ~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr 611 (659)
T KOG0060|consen 533 KSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYR 611 (659)
T ss_pred cCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHH
Confidence 24689999999999999887665 468887664 6788999999999999999999999999999999999999999988
Q ss_pred HHHHHcCCCeEEEEccCchhhhccCeEEEEeC
Q 001371 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1091)
Q Consensus 564 ~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 595 (1091)
-+++ .+-|.|-|.||-|.-+.-|.++-|+.
T Consensus 612 ~~r~--~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 612 KCRE--MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHH--cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 8877 48999999999999999999999975
No 285
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-38 Score=382.81 Aligned_cols=220 Identities=25% Similarity=0.387 Sum_probs=178.7
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcccc----------
Q 001371 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK---------- 451 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~---------- 451 (1091)
-|+++|++++|++.. ..++|+||||++++||++|||||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 589999999996321 247999999999999999999999999999999999999999999999997552
Q ss_pred CCChH---HHh-hceeEEeccC--cccc-ccHHHHhccCCC---CCCH----HHHHHHHHHcccHHHHhhCCCCcccccc
Q 001371 452 EFQLQ---WIR-KKIGLVSQEP--VLFT-GSIKDNIAYGKD---DATT----EEIRVATELANAAKFIDKLPQGIDTLVG 517 (1091)
Q Consensus 452 ~~~~~---~lr-~~ia~V~Q~~--~Lf~-~TIreNI~~g~~---~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vg 517 (1091)
+.+.. .+| ++|+||+|+| .++. -||+|||.++.. ..+. +++.++++..++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22322 344 4799999998 5665 599999987521 1222 344455555554210 11233
Q ss_pred cCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-C-CCeEEEEccCchhhh-ccCeEEEEe
Q 001371 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-V-NRTTVIVAHRLSTVR-NADMIAVIH 594 (1091)
Q Consensus 518 e~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~-~~T~I~ItHrls~i~-~aD~Iivl~ 594 (1091)
....+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. + ++|+|+|||++..+. .||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 3446799999999999999999999999999999999999999999998875 3 789999999999875 499999999
Q ss_pred CCEEeeecChhHHhcC
Q 001371 595 RGKIVEKGTHSKLVED 610 (1091)
Q Consensus 595 ~G~Ive~Gt~~eL~~~ 610 (1091)
+|+|++.|+++++...
T Consensus 244 ~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 244 QGEAVETGSVEQIFHA 259 (623)
T ss_pred CCeecccCCHHHhhcC
Confidence 9999999999999765
No 286
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=374.06 Aligned_cols=212 Identities=24% Similarity=0.368 Sum_probs=176.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH-Hhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~-lr~~ 461 (1091)
-|+++|++++|++ .++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++...+... .|++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 46999999999999999999999999999999999999999999999999987665544 4578
Q ss_pred eeEEeccCcccc-ccHHHHhccCCCC------CCHH----HHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 462 IGLVSQEPVLFT-GSIKDNIAYGKDD------ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 462 ia~V~Q~~~Lf~-~TIreNI~~g~~~------~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
++||+|++.+|. -|++|||.++... .+.+ ++.++++..++ .......-.+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNL-----------RFSSDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCC-----------CCCccCchhhCCHHHHHH
Confidence 999999998886 4999999986421 1222 23333333332 222223345799999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHh
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+.+++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999999999999988764 4689999999999886 59999999999999999988764
No 287
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-38 Score=310.63 Aligned_cols=222 Identities=24% Similarity=0.473 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH-Hhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~-lr~~ 461 (1091)
.+..+|+..+|. .++|.+++||++++||.|++.||+|+||||....+.|+..|++|+|.+||.||+.++... -|--
T Consensus 4 ~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 477899999996 357999999999999999999999999999999999999999999999999999999875 4556
Q ss_pred eeEEeccCccccc-cHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 462 IGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
|||.||||.+|.+ ||+|||..--+ ..+...+.+.+...+++.++.+ .+...-...|..||||||.|+-|||||..+
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE-~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLE-IREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHh-hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 9999999999986 99999985432 1111112222222233334333 344555668899999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEc-cCc-hhhhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA-HRL-STVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~It-Hrl-s~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|+.++||||++++||.+-..||+-|+.+.....=|+|| |.. +|+.-|||.+++.+|+|..+|+++|+.++
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 99999999999999999999999998876444445555 886 68899999999999999999999999976
No 288
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.5e-37 Score=371.27 Aligned_cols=211 Identities=18% Similarity=0.283 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|.++...+...+|+.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 789999999963 35999999999999999999999999999999999999999999999999887777777888899
Q ss_pred EEeccCcc---------ccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 464 LVSQEPVL---------FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 464 ~V~Q~~~L---------f~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
|++|++.+ +..|++||+.++. ..++++.++++..++.+...+ ....||||||||++||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la 147 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQFGITALLDR-----------RFKYLSTGETRKTLLC 147 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHcCCHhhhhC-----------CcccCCHHHHHHHHHH
Confidence 99998753 2469999987652 234567777777776554333 2357999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.+ ||+|++|++|+|++.|+.+++...
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 99999999999999999999999999999998864 46899999999998865 999999999999999999988653
No 289
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.5e-37 Score=376.11 Aligned_cols=217 Identities=28% Similarity=0.452 Sum_probs=179.6
Q ss_pred cEEEEeEEEECCCC--------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC
Q 001371 383 DIELRDVYFSYPAR--------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~--------~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~ 454 (1091)
-|+++|++++|+.. .+.++|+|+||+|++||++||+||+|||||||+++|+|++ |++|+|.++|.++..++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999621 1247999999999999999999999999999999999998 58999999999998776
Q ss_pred hHH---HhhceeEEeccC--cccc-ccHHHHhccCCC----CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCC
Q 001371 455 LQW---IRKKIGLVSQEP--VLFT-GSIKDNIAYGKD----DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520 (1091)
Q Consensus 455 ~~~---lr~~ia~V~Q~~--~Lf~-~TIreNI~~g~~----~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G 520 (1091)
.+. +|++++||+|++ .+|. .|++||+.++.. ..+ ++++.++++..++.+. ......
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~ 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPE----------TRHRYP 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHH----------HHhcCC
Confidence 543 477899999998 3665 599999987521 011 2334455555554311 122334
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCE
Q 001371 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~ 597 (1091)
.+||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 57999999999999999999999999999999999999999999988753 7899999999998864 99999999999
Q ss_pred EeeecChhHHhcC
Q 001371 598 IVEKGTHSKLVED 610 (1091)
Q Consensus 598 Ive~Gt~~eL~~~ 610 (1091)
|++.|+.+++...
T Consensus 504 i~~~~~~~~~~~~ 516 (529)
T PRK15134 504 VVEQGDCERVFAA 516 (529)
T ss_pred EEEEcCHHHHhcC
Confidence 9999999999764
No 290
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.3e-37 Score=329.08 Aligned_cols=224 Identities=31% Similarity=0.510 Sum_probs=190.2
Q ss_pred CcEEEEeEEEECCCCC--------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCC
Q 001371 382 GDIELRDVYFSYPARP--------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF 453 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~--------~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~ 453 (1091)
.-++.+|+...||-+. ...+.++|||++++||+++|||+||||||||-.+|+|+.+++ |+|.++|.++..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 3578899988886432 124789999999999999999999999999999999999886 9999999999999
Q ss_pred ChHH---HhhceeEEeccCc-ccc--ccHHHHhccC----CCCCC----HHHHHHHHHHcccHHHHh-hCCCCccccccc
Q 001371 454 QLQW---IRKKIGLVSQEPV-LFT--GSIKDNIAYG----KDDAT----TEEIRVATELANAAKFID-KLPQGIDTLVGE 518 (1091)
Q Consensus 454 ~~~~---lr~~ia~V~Q~~~-Lf~--~TIreNI~~g----~~~~~----~~~i~~a~~~a~l~~~i~-~lp~G~~T~vge 518 (1091)
+.+. +|+++-+|+|||+ -+| .||-+=|.=| .|..+ ++++.+|++.++++.... +.|
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP--------- 424 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP--------- 424 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC---------
Confidence 8776 6789999999997 233 4777766544 23333 456888888988876543 344
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeC
Q 001371 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1091)
Q Consensus 519 ~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~ 595 (1091)
..+|||||||||||||++-+|++++|||||||||-.....|.+.++++- .+-+=++|+|.|..++. ||+|+||.+
T Consensus 425 --hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 425 --HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred --cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 5799999999999999999999999999999999999999998887753 45689999999999986 999999999
Q ss_pred CEEeeecChhHHhcCCCchhHH
Q 001371 596 GKIVEKGTHSKLVEDPEGAYSQ 617 (1091)
Q Consensus 596 G~Ive~Gt~~eL~~~~~~~y~~ 617 (1091)
|+|||+|+-+++.+++...|.+
T Consensus 503 GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 503 GKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred CEEeeeCCHHHHhcCCCcHHHH
Confidence 9999999999999987777765
No 291
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.9e-37 Score=327.32 Aligned_cols=194 Identities=25% Similarity=0.372 Sum_probs=167.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ ..+|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.. . .+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 789999999963 469999999999999999999999999999999999999999999999998753 2 2788999
Q ss_pred EEeccCccc-cccHHHHhccCCC--CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 464 LVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 464 ~V~Q~~~Lf-~~TIreNI~~g~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
|++|++.++ +.|++||+.+... ...++++.++++..++.++.. .| ...||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~----------~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LP----------FGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-CC----------hhhcCHHHHHHHHHHHHHhcC
Confidence 999988765 5799999976432 234566788888888876432 22 237999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEEeC
Q 001371 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHR 595 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~ 595 (1091)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999998753 57899999999999998 99988854
No 292
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.8e-37 Score=377.13 Aligned_cols=202 Identities=27% Similarity=0.436 Sum_probs=171.1
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC--CcEEEECCccccCCChHHHhhceeEEeccCcccc-cc
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ--AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GS 475 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~--~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~-~T 475 (1091)
+++|+|+|+++++||++||+||||||||||+++|.|..+|. +|+|.+||.++. ...+++++||+|++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 56999999999999999999999999999999999999885 899999999874 245678999999999996 59
Q ss_pred HHHHhccCC----C-CCCHHHHHHHHHHcccHHHHh--hCCCCcccccccC-CCCCChHHHHHHHHHHHhhcCCCEEEee
Q 001371 476 IKDNIAYGK----D-DATTEEIRVATELANAAKFID--KLPQGIDTLVGEH-GTQLSGGQKQRIAIARAILKDPRILLLD 547 (1091)
Q Consensus 476 IreNI~~g~----~-~~~~~~i~~a~~~a~l~~~i~--~lp~G~~T~vge~-G~~LSGGQkQRialARAll~~~~IliLD 547 (1091)
++|||.|+. + +.++++..+.+ ++.++ .|++..||.||++ ...||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVA-----ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHH-----HHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999998752 2 23443322211 22233 2444568999865 6789999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchh--hhccCeEEEEeCCEEeeecChhHHhc
Q 001371 548 EATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 548 E~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~--i~~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.+|+|++|++|++++.|+++++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999998875 58999999999984 46799999999999999999999863
No 293
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.1e-37 Score=326.30 Aligned_cols=193 Identities=24% Similarity=0.326 Sum_probs=164.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.+||.++...+ ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 478999999963 46999999999999999999999999999999999999999999999999988765 45678999
Q ss_pred EEeccCcccc-ccHHHHhccCCCCC--CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 464 LVSQEPVLFT-GSIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 464 ~V~Q~~~Lf~-~TIreNI~~g~~~~--~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
|++|++.+|. .|++||+.++.+.. .++++.++++..++.++++. . ..+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-------P----AAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-------C----hhhcCHHHHHHHHHHHHHhcC
Confidence 9999999886 69999998653211 23457788888888766532 2 247999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHHHHHHH-cCCCeEEEEccCchhhhccCeEEE
Q 001371 541 PRILLLDEATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRNADMIAV 592 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~aD~Iiv 592 (1091)
|+++||||||++||+.+.+.+.+.|+++ .+++|+|++||+...+. +|+.+.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999999886 35789999999985443 355544
No 294
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.4e-37 Score=327.68 Aligned_cols=196 Identities=22% Similarity=0.305 Sum_probs=164.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|.++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999963 4699999999999999999999999999999999999999999999999988753 345689
Q ss_pred eEEeccCccccc-cHHHHhccCCC--CC-CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKD--DA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~--~~-~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
+|++|++.++.+ |++||+.++.+ .. .++...++++..++.+ ..++. ...||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~----~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-------YEDTL----VRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-------hccCC----hhhCCHHHHHHHHHHHHHh
Confidence 999999999886 99999976432 11 2334445555554432 23333 3579999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeC
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHR 595 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~ 595 (1091)
++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998754 4689999999999885 5999999863
No 295
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-37 Score=322.72 Aligned_cols=195 Identities=34% Similarity=0.569 Sum_probs=171.4
Q ss_pred EEEEeEEEECCCCC------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH
Q 001371 384 IELRDVYFSYPARP------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~------~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~ 457 (1091)
++++|++..|+... ...+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--- 81 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--- 81 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---
Confidence 78899999887432 136899999999999999999999999999999999999999999999999987776
Q ss_pred HhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHH-HHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 458 IRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK-FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 458 lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~-~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
.+...+++.+.++.+++.+ +..+.| ..|||||||||+||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHH
Confidence 2234567899999999866 566666 4799999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcCCCc
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~~~ 613 (1091)
|.-+|+++++||||||||...+..|.+.+.++. .+-|.+.|||.++.+++ ||+|.||..|+|+|.|+-+|+..++.-
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999988887654 47799999999999987 999999999999999999999988766
Q ss_pred hhHHHH
Q 001371 614 AYSQLI 619 (1091)
Q Consensus 614 ~y~~l~ 619 (1091)
.|.+..
T Consensus 204 pYTk~L 209 (268)
T COG4608 204 PYTKAL 209 (268)
T ss_pred HHHHHH
Confidence 676554
No 296
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-37 Score=370.96 Aligned_cols=213 Identities=22% Similarity=0.361 Sum_probs=176.4
Q ss_pred EEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh-HHHhhceeE
Q 001371 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGL 464 (1091)
Q Consensus 386 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~-~~lr~~ia~ 464 (1091)
++|++++|++ +++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.++|.++...+. +.+|++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 469999999999999999999999999999999999999999999999999876654 346778999
Q ss_pred EeccCcccc-ccHHHHhccCCC---C--CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 465 VSQEPVLFT-GSIKDNIAYGKD---D--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 465 V~Q~~~Lf~-~TIreNI~~g~~---~--~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
|+|++.+|. .|++||+.++.. . .+.++..+. +.+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----TKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 599999997642 1 122222111 12333333 3433444556789999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHh
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|+|++.|+.+++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999998864 4789999999999876 59999999999999999988763
No 297
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-37 Score=369.85 Aligned_cols=207 Identities=25% Similarity=0.400 Sum_probs=173.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh-HHHhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~-~~lr~~ 461 (1091)
-|+++|++++|++ .++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 469999999999999999999999999999999999999999999999999876543 456788
Q ss_pred eeEEeccCccccc-cHHHHhccCCC----C-CCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 462 IGLVSQEPVLFTG-SIKDNIAYGKD----D-ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~-TIreNI~~g~~----~-~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
|+||+|++.+|.. |++||+.++.. . .+. +++.++++..++ +........+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGV-----------DIDPDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCC-----------CCCcCCchhhCCHHHHHHH
Confidence 9999999998875 99999998631 1 122 233344444333 2222334457999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecC
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt 603 (1091)
+||||++++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.++
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999999999998764 47899999999998865 99999999999997665
No 298
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.9e-37 Score=370.86 Aligned_cols=220 Identities=29% Similarity=0.426 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccCCChH
Q 001371 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQ 456 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~~~~~ 456 (1091)
-|+++|++++|++. ...++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 38999999999631 124799999999999999999999999999999999999987 799999999999887654
Q ss_pred H---Hh-hceeEEeccCc--ccc-ccHHHHhccCC---CCCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCC
Q 001371 457 W---IR-KKIGLVSQEPV--LFT-GSIKDNIAYGK---DDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1091)
Q Consensus 457 ~---lr-~~ia~V~Q~~~--Lf~-~TIreNI~~g~---~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~ 522 (1091)
. +| ++++||+|+|. ++. .|+++|+.++. ...+ ++++.++++..++.+... .......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3 34 57999999985 443 58999986421 1112 234556666666533110 11223457
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEeCCEEe
Q 001371 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIV 599 (1091)
Q Consensus 523 LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Iv 599 (1091)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. .++|+|+|||++..+. .||+|++|++|+|+
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 3789999999999876 49999999999999
Q ss_pred eecChhHHhcC
Q 001371 600 EKGTHSKLVED 610 (1091)
Q Consensus 600 e~Gt~~eL~~~ 610 (1091)
+.|+.+++...
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998764
No 299
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=349.57 Aligned_cols=204 Identities=27% Similarity=0.369 Sum_probs=170.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.++++|++|+|+++..+++|+|+||+|++|+++||+||+|||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58899999999764345799999999999999999999999999999999999999999999999641
Q ss_pred eEEeccCcccc-ccHHHHhccCC--CCCCHHH----HHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGK--DDATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~--~~~~~~~----i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
++.+.+.++. .|++|||.++. ...+.++ +.++++.+++.+++.+ ....||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------CcccCCHHHHHHHHHHH
Confidence 2333444443 59999998642 1233333 4456677777665543 34579999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999999999999999999998764 47899999999998865 999999999999999999999765
No 300
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6.3e-37 Score=329.60 Aligned_cols=200 Identities=28% Similarity=0.364 Sum_probs=161.7
Q ss_pred EEEEeEEEECCCC---C-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEEC--Cc--cccCCCh
Q 001371 384 IELRDVYFSYPAR---P-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID--GI--NLKEFQL 455 (1091)
Q Consensus 384 I~~~~vsf~Y~~~---~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~id--g~--~i~~~~~ 455 (1091)
|+++|++++|+.. + ..++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6899999999631 1 2469999999999999999999999999999999999999999999998 42 6666665
Q ss_pred HH---H-hhceeEEeccCcccc-ccHHHHhccCC--CCCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCC
Q 001371 456 QW---I-RKKIGLVSQEPVLFT-GSIKDNIAYGK--DDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1091)
Q Consensus 456 ~~---l-r~~ia~V~Q~~~Lf~-~TIreNI~~g~--~~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LS 524 (1091)
.. + +++++|++|++.+|. .|++|||.++. ...+ ++++.++++..++.+... ...+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----------HLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----------hCCcccCC
Confidence 43 3 457999999998876 49999997631 1122 223344444444432221 22356899
Q ss_pred hHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEE
Q 001371 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVI 593 (1091)
Q Consensus 525 GGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl 593 (1091)
||||||++||||++++|+++||||||++||+++.+.+.+.|+++. +++|+|++||++..+. .||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998864 4789999999999885 69999876
No 301
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5.2e-37 Score=329.10 Aligned_cols=187 Identities=27% Similarity=0.457 Sum_probs=159.7
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCcc---ccccHHHHhccC
Q 001371 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIAYG 483 (1091)
Q Consensus 407 l~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~L---f~~TIreNI~~g 483 (1091)
|+|++||+++|+||+|||||||+++|.|+++|++|+|.+||.++. ..|++++|++|+|.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998764 356789999999976 457999999875
Q ss_pred CC---------C-CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCC
Q 001371 484 KD---------D-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1091)
Q Consensus 484 ~~---------~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaL 553 (1091)
.. . .+++++.++++..++.++.. + ....||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELAD-------R----PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhc-------C----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 1 12345677777777755432 2 23469999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcC
Q 001371 554 DAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 554 D~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+.
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999998875 4789999999999875 59999999 7999999999998653
No 302
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-37 Score=295.45 Aligned_cols=216 Identities=32% Similarity=0.535 Sum_probs=180.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCC---------
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF--------- 453 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~--------- 453 (1091)
.++.+|+..+|.. ..|||+|||+.++|+.+.|+|.|||||||++++|.=+-.|+.|.|.++|..|+--
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 5889999999963 4699999999999999999999999999999999999999999999999877532
Q ss_pred ----ChHHHhhceeEEeccCcccc-ccHHHHhc------cCCCCC-CHHHHHHHHHHcccHHHHhhCCCCcccccccCCC
Q 001371 454 ----QLQWIRKKIGLVSQEPVLFT-GSIKDNIA------YGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521 (1091)
Q Consensus 454 ----~~~~lr~~ia~V~Q~~~Lf~-~TIreNI~------~g~~~~-~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~ 521 (1091)
.+..+|.+.++|+|.-.|++ .|+.||+. +|.+.. -.|+-+.-+.++++.+--+.- ..
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----------P~ 151 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAY-----------PA 151 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcC-----------cc
Confidence 24568899999999999986 79999985 233211 012223345555655544433 36
Q ss_pred CCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEe
Q 001371 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1091)
Q Consensus 522 ~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv 599 (1091)
.|||||+||.||||||.-+|+++++|||||||||+---.+.+.++++. .|||.++|||-+.+.++ +.+++.|.+|.|-
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 899999999999999999999999999999999997777777777764 68999999999999987 8899999999999
Q ss_pred eecChhHHhcCCC
Q 001371 600 EKGTHSKLVEDPE 612 (1091)
Q Consensus 600 e~Gt~~eL~~~~~ 612 (1091)
|+|+++++..++.
T Consensus 232 E~G~P~qvf~nP~ 244 (256)
T COG4598 232 EEGPPEQVFGNPQ 244 (256)
T ss_pred ccCChHHHhcCCC
Confidence 9999999987643
No 303
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.5e-37 Score=370.05 Aligned_cols=221 Identities=26% Similarity=0.437 Sum_probs=177.0
Q ss_pred cEEEEeEEEECCC--CCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEEC-Ccc---ccCCC--
Q 001371 383 DIELRDVYFSYPA--RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID-GIN---LKEFQ-- 454 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~--~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~id-g~~---i~~~~-- 454 (1091)
-|+++|++++|++ +.+.++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4899999999963 123469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -hHHHhhceeEEeccCcccc-ccHHHHhccCCC-CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 455 -LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD-DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 455 -~~~lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~-~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
...+|++|+||+|++.+|. .|++||+.++.. ... ++++.++++..++.+. ..+.........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHH
Confidence 2346778999999998887 599999975311 111 2234445555544220 00001233345799999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecCh
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 604 (1091)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|++++.|++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988753 7899999999998865 999999999999999999
Q ss_pred hHHhc
Q 001371 605 SKLVE 609 (1091)
Q Consensus 605 ~eL~~ 609 (1091)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 88764
No 304
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=332.57 Aligned_cols=188 Identities=25% Similarity=0.356 Sum_probs=159.9
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCcccc-ccHH
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIK 477 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~-~TIr 477 (1091)
.++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|+|.++| ++++++|++.+++ .|++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g-------------~~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-------------EVSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC-------------EEeEEecccCCCCCCcHH
Confidence 4689999999999999999999999999999999999999999999999 4678899988765 5999
Q ss_pred HHhccCC--CCCCHHHHH----HHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCC
Q 001371 478 DNIAYGK--DDATTEEIR----VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1091)
Q Consensus 478 eNI~~g~--~~~~~~~i~----~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tS 551 (1091)
||+.++. ...+.++.. .+++..++.++ +.....+||||||||++||||++++|+||||||||+
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~ 172 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEF-----------IYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALS 172 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccc
Confidence 9998642 123334333 33444444433 333456899999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 552 ALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 552 aLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
+||+.+.+.+.+.|.++. .++|+|++||++..+.. ||+|++|++|+|++.|+++++..+
T Consensus 173 gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 173 VGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHH
Confidence 999999999999988764 47899999999998865 999999999999999999999876
No 305
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=6e-37 Score=320.77 Aligned_cols=174 Identities=33% Similarity=0.539 Sum_probs=148.3
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccC--CChHHHhhceeEEeccC--ccccc
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKKIGLVSQEP--VLFTG 474 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~--~~~~~lr~~ia~V~Q~~--~Lf~~ 474 (1091)
+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++.. .+...+|+.++||+|+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 579999999999999999999999999999999999999999999999998852 23456788999999998 57889
Q ss_pred cHHHHhccCCC--CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeC
Q 001371 475 SIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548 (1091)
Q Consensus 475 TIreNI~~g~~--~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE 548 (1091)
|++|||.++.. ..++ +++.++++..++.++..+. ...||||||||++||||++++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP-----------THCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987521 1222 3456667777776554443 35799999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchh
Q 001371 549 ATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST 583 (1091)
Q Consensus 549 ~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~ 583 (1091)
||++||+.+.+.+.+.|+++. +++|+|+|||++..
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998864 47899999999864
No 306
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-36 Score=298.98 Aligned_cols=213 Identities=24% Similarity=0.472 Sum_probs=184.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+.+|+|++-. .+.+|++++|+++|||.+||+||+|+|||||+++|.|++.|++|++.++|+++.+.+..++-++-|
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 67899999875 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcc-ccccHHHHhccCCC-C-----CCHHH--HHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 464 LVSQEPVL-FTGSIKDNIAYGKD-D-----ATTEE--IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 464 ~V~Q~~~L-f~~TIreNI~~g~~-~-----~~~~~--i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
+.||+..| |.-|++|-+.+|.- . ..+++ ..+++.++++..+-.+ .-..||||++||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHH
Confidence 99999987 99999999999952 1 11333 4667777776555332 2247999999999999
Q ss_pred HHhhc------CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhH
Q 001371 535 RAILK------DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 535 RAll~------~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~e 606 (1091)
|.|.+ ++++|+|||||||||....+.+.+..+++. .+..|+.|=|.|+.. ..||+|++|.+|||+..|++++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99975 445999999999999998888888888765 568999999999974 6799999999999999999999
Q ss_pred HhcC
Q 001371 607 LVED 610 (1091)
Q Consensus 607 L~~~ 610 (1091)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8864
No 307
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=8.6e-37 Score=369.01 Aligned_cols=212 Identities=26% Similarity=0.478 Sum_probs=174.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCcEEEEC---------------
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLID--------------- 446 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~--~~~~G~I~id--------------- 446 (1091)
|+++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999953 46999999999999999999999999999999999996 7999999997
Q ss_pred --------Ccccc-------CCC---hHHHhhceeEEecc-Ccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcc
Q 001371 447 --------GINLK-------EFQ---LQWIRKKIGLVSQE-PVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELAN 500 (1091)
Q Consensus 447 --------g~~i~-------~~~---~~~lr~~ia~V~Q~-~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~ 500 (1091)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++.. ..+ ++++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33321 111 23467889999998 57776 599999987421 122 234555666666
Q ss_pred cHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEc
Q 001371 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVA 578 (1091)
Q Consensus 501 l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~It 578 (1091)
+.+... ....+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++. .++|+|+||
T Consensus 158 l~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 654432 2345799999999999999999999999999999999999999999998874 378999999
Q ss_pred cCchhhh-ccCeEEEEeCCEEeeecChhHHhc
Q 001371 579 HRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 579 Hrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
|++..+. .||+|++|++|+|++.|+++++..
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9999986 499999999999999999988864
No 308
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-36 Score=320.14 Aligned_cols=189 Identities=20% Similarity=0.364 Sum_probs=161.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ +.++ ++||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++.+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 689999999953 3455 599999999999999999999999999999999999999999999887643 35699
Q ss_pred EEeccCcc-ccccHHHHhccCCCCC-CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC
Q 001371 464 LVSQEPVL-FTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1091)
Q Consensus 464 ~V~Q~~~L-f~~TIreNI~~g~~~~-~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~ 541 (1091)
|++|++.+ ++.|++|||.++.+.. .++++.++++..++.++.. ..+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCC
Confidence 99998754 7789999998764322 3456777778877765543 345689999999999999999999
Q ss_pred CEEEeeCCCCCCCHHhHHHHHHHHHHH-cCCCeEEEEccCchhhhccCeEE
Q 001371 542 RILLLDEATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRNADMIA 591 (1091)
Q Consensus 542 ~IliLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~aD~Ii 591 (1091)
+++||||||++||+.+.+.+.+.|+.. .+++|+|++||+++.++.||-|.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999998753 46799999999999999999763
No 309
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5.4e-34 Score=355.51 Aligned_cols=367 Identities=21% Similarity=0.274 Sum_probs=288.0
Q ss_pred CChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 715 KPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQ 794 (1091)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~ 794 (1091)
.+.+..+...+++.++.........++....++........ .........++++.++..++.+++.+.+.+.+.+...
T Consensus 157 ~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 234 (711)
T TIGR00958 157 GRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP--PALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINL 234 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444555666666654322111 1122234455566667778888899999999999999
Q ss_pred HHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001371 795 RIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874 (1091)
Q Consensus 795 ~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~p 874 (1091)
++|.++|++++++|++||+ .+++|+++||+++|++.+++.+...+..++..++.+++.+++++..+|+++++.++.+|
T Consensus 235 ~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~ 312 (711)
T TIGR00958 235 RIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLP 312 (711)
T ss_pred HHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999 67899999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHH
Q 001371 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASF 954 (1091)
Q Consensus 875 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~ 954 (1091)
+.++..++..+..+...+..+.........+.|+++|++|||+|+.|+++.++|.+..+...+...+.....+....+..
T Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (711)
T TIGR00958 313 LVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTS 392 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777766666666555666666778899999999999999999999999999998888777777666665555555
Q ss_pred HHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 001371 955 FLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGT 1034 (1091)
Q Consensus 955 ~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~ 1034 (1091)
.+......+.+++|..++..|.++.++++............+........+...+..+..+++++++.+++.+.... .
T Consensus 393 ~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~ 470 (711)
T TIGR00958 393 VLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT--L 470 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--C
Confidence 55555566677889999999999998887766665555666677777788899999999999999987654332211 1
Q ss_pred cccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCcccc
Q 001371 1035 ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQL 1087 (1091)
Q Consensus 1035 ~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~ 1087 (1091)
.+++.+|.|+|+||+|+||++|+.+||+|+||+|+|||++|||||||||||||
T Consensus 471 ~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTL 523 (711)
T TIGR00958 471 APLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTV 523 (711)
T ss_pred CCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHH
Confidence 22345789999999999998776679999999999999999999999999987
No 310
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=372.69 Aligned_cols=215 Identities=28% Similarity=0.433 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH---
Q 001371 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI--- 458 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l--- 458 (1091)
-++++|++++|++.. .+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++...+.+.+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999996421 2479999999999999999999999999999999999999999999999999999887664
Q ss_pred -hhceeEEeccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 459 -RKKIGLVSQEPVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 459 -r~~ia~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
|+.++|++|++.+|. .|+.||+.++.. ..+ +++..+.++..++. ..+.....+||||||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~-----------~~~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE-----------DRVEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-----------hhhcCCcccCCHHHHHH
Confidence 578999999999997 599999986421 111 12334444444444 44444456899999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHh
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||++..++.||++++|++|+++++|+.+|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998875 479999999999999999999999999999999999885
No 311
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-37 Score=368.24 Aligned_cols=219 Identities=22% Similarity=0.365 Sum_probs=176.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCcEEEECCccccCCCh-HHHhh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLIDGINLKEFQL-QWIRK 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~-~~~G~I~idg~~i~~~~~-~~lr~ 460 (1091)
-|+++|++++|+.+.+.++|+|+||+|++||++||+||+|||||||+++|+|+++ |++|+|.++|.++...+. +.+|.
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953223469999999999999999999999999999999999999 599999999999875543 45677
Q ss_pred ceeEEeccC---cccc-ccHHHHhccCCC-C------CCHHHHHHHHHHcccHHHHhhCCCCccc-ccccCCCCCChHHH
Q 001371 461 KIGLVSQEP---VLFT-GSIKDNIAYGKD-D------ATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQK 528 (1091)
Q Consensus 461 ~ia~V~Q~~---~Lf~-~TIreNI~~g~~-~------~~~~~i~~a~~~a~l~~~i~~lp~G~~T-~vge~G~~LSGGQk 528 (1091)
.++||+|++ .+|. .|+.||+.++.. . .+.++.. ..+.+.++.+ |++. ........||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAEL-----KTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHH-----HHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 3654 699999987521 0 1111111 1123334443 2221 23344467999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 606 (1091)
||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|+|+..|+.++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999988764 47899999999998865 99999999999999998877
Q ss_pred Hh
Q 001371 607 LV 608 (1091)
Q Consensus 607 L~ 608 (1091)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 63
No 312
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.4e-36 Score=365.60 Aligned_cols=210 Identities=24% Similarity=0.411 Sum_probs=174.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCcEEEECCccccCCChHH-Hhh
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQW-IRK 460 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~--~~G~I~idg~~i~~~~~~~-lr~ 460 (1091)
|+++|++++|++ .++|+|+||++++|++++|+||+|||||||+++|+|+++| ++|+|.++|.++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999963 4699999999999999999999999999999999999987 7999999999998877654 467
Q ss_pred ceeEEeccCccccc-cHHHHhccCCCC------CCHH----HHHHHHHHcccHHHHhhCCCCc-ccccccCCCCCChHHH
Q 001371 461 KIGLVSQEPVLFTG-SIKDNIAYGKDD------ATTE----EIRVATELANAAKFIDKLPQGI-DTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~~-TIreNI~~g~~~------~~~~----~i~~a~~~a~l~~~i~~lp~G~-~T~vge~G~~LSGGQk 528 (1091)
+++||+|++.+|.. |++||+.++... .+.+ ++.++++..++ ++.. +.. ..+||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~----~~~LSgG~~ 147 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQL-------DADNVTRP----VGDYGGGQQ 147 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCC-------CCCcccCc----hhhCCHHHH
Confidence 89999999988874 999999886421 1222 22333333322 1111 222 346999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 606 (1091)
||++|||||+++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|+.++
T Consensus 148 qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 148 QLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999999999999999999999999999999998764 47899999999999865 99999999999999998765
Q ss_pred H
Q 001371 607 L 607 (1091)
Q Consensus 607 L 607 (1091)
+
T Consensus 228 ~ 228 (500)
T TIGR02633 228 M 228 (500)
T ss_pred C
Confidence 4
No 313
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-37 Score=311.83 Aligned_cols=217 Identities=29% Similarity=0.524 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHH-hhce
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~l-r~~i 462 (1091)
++.++++.+|.+ -.+++|+||++++||.++|+||+||||||++|+|.|+|+|++|+|.++|.||..++.+.. |.-|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 568999999963 469999999999999999999999999999999999999999999999999999998875 4569
Q ss_pred eEEeccCccccc-cHHHHhccCCC------------CC--CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKD------------DA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~------------~~--~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
+--+|.+-+|++ |+.||+..+.. .+ .+++.. +.| .+.++.+ |++-.-.+...+||+||
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~---e~A--~~~Le~v--gL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR---ERA--RELLEFV--GLGELADRPAGNLSYGQ 154 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHH---HHH--HHHHHHc--CCchhhcchhhcCChhH
Confidence 999999999985 99999988732 11 122221 111 1222222 44445555666899999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecCh
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 604 (1091)
+.|+-|||||..+|++|+||||.+++.+.-...+.+.|+++.+ +.|+++|-|+++.+.. ||+|+||+.|+++.+|++
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCH
Confidence 9999999999999999999999999999988888888988874 4899999999999865 999999999999999999
Q ss_pred hHHhcC
Q 001371 605 SKLVED 610 (1091)
Q Consensus 605 ~eL~~~ 610 (1091)
+|..++
T Consensus 235 ~eV~~d 240 (250)
T COG0411 235 EEVRNN 240 (250)
T ss_pred HHHhcC
Confidence 999875
No 314
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.3e-36 Score=326.01 Aligned_cols=194 Identities=26% Similarity=0.347 Sum_probs=155.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
+.++|++.+|+ ++++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.+||.++... +...+
T Consensus 23 l~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~ 94 (224)
T cd03220 23 LGILGRKGEVG---EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG 94 (224)
T ss_pred hhhhhhhhhcC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc
Confidence 56777777775 35799999999999999999999999999999999999999999999999876321 11111
Q ss_pred EEeccCccccccHHHHhccCCC--CCCHH----HHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHh
Q 001371 464 LVSQEPVLFTGSIKDNIAYGKD--DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1091)
Q Consensus 464 ~V~Q~~~Lf~~TIreNI~~g~~--~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAl 537 (1091)
...+.|++||+.++.. ..+.+ ++.++++..++.+ ..++.+ ..||||||||++||||+
T Consensus 95 ------~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LSgG~~qrv~laral 157 (224)
T cd03220 95 ------FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGD-------FIDLPV----KTYSSGMKARLAFAIAT 157 (224)
T ss_pred ------CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------hhhCCh----hhCCHHHHHHHHHHHHH
Confidence 2235799999987532 12222 2334444444433 234444 46999999999999999
Q ss_pred hcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeec
Q 001371 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 538 l~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~G 602 (1091)
+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|++++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998864 4689999999999876 59999999999998865
No 315
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.2e-36 Score=287.71 Aligned_cols=207 Identities=29% Similarity=0.417 Sum_probs=173.0
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChH---HH
Q 001371 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WI 458 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~---~l 458 (1091)
-|++++++..-++. ..-.+|++|+|.|++||.+|||||||||||||+.++.|+-+|++|+|.+.|+++.+++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 36778887776543 235699999999999999999999999999999999999999999999999999999865 45
Q ss_pred h-hceeEEeccCccc-cccHHHHhccCCC-----CCC-HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 459 R-KKIGLVSQEPVLF-TGSIKDNIAYGKD-----DAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 459 r-~~ia~V~Q~~~Lf-~~TIreNI~~g~~-----~~~-~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
| +++|+|+|.-.|. |.|-.||+..... ..+ .+.-.+-++.++|.+-+.. -..+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~H-----------yP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH-----------YPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccccccc-----------CccccCchHHHH
Confidence 5 5799999999876 5799999986531 111 1223444555555554444 446899999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhccCeEEEEeCCEEee
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive 600 (1091)
+|||||+.-.|+||+-||||-+||..|.+.|-+.+..+- .+.|.++|||..+....|||++.|.+|+|++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999988876543 5789999999999999999999999999986
No 316
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.6e-36 Score=392.09 Aligned_cols=216 Identities=23% Similarity=0.421 Sum_probs=187.4
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
..|+++|++++|++. ++++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++|.++.. +...+|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 369999999999632 3579999999999999999999999999999999999999999999999999975 56678999
Q ss_pred eeEEeccCcccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 462 ia~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
+|||||++.+|+ .|++|||.|+.. ..+ ++++.+.++..++.+. ......+||||||||++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~-----------~~~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHK-----------RNEEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHH
Confidence 999999999997 499999987421 112 2345555565555433 3344567999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcC
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|||+.+|+|+|||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+.++|.++
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999878999999999999886 4999999999999999999999765
No 317
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-36 Score=294.23 Aligned_cols=204 Identities=29% Similarity=0.473 Sum_probs=169.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
+...+++.+|++.+ .++|+|+|++|.+||+++++||||||||||+|++.||.+|..|+|.+||.+|..-.. .=|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 45678999998654 569999999999999999999999999999999999999999999999987765543 368
Q ss_pred EEeccCcccc-ccHHHHhccCCC--CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 464 LVSQEPVLFT-GSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 464 ~V~Q~~~Lf~-~TIreNI~~g~~--~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
+|+|++-|+. -++.||+.||-. ..+. +...+.+..++|.++=. ..-..||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~-----------~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH-----------KYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccc-----------cceEeecchHHHHHHHHHH
Confidence 9999999988 699999999842 1222 22334455555544321 2336799999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchh-hhccCeEEEEe--CCEEeeecCh
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLST-VRNADMIAVIH--RGKIVEKGTH 604 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~-i~~aD~Iivl~--~G~Ive~Gt~ 604 (1091)
|.-+|+.|+||||++|||+-|.+.+|+.+.++. .+|-+++|||.++. +--|++++||. .|+|++.=+.
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999987753 58999999999986 45699999996 6899986544
No 318
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.4e-34 Score=377.43 Aligned_cols=215 Identities=17% Similarity=0.332 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++++|+++ ++++|+|+||+|++||++||+||+|||||||+++|+|+.+|++|+|.++|.++.+ +.+..|++|
T Consensus 1937 ~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1937 ILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred eEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 59999999999642 3579999999999999999999999999999999999999999999999999865 456678899
Q ss_pred eEEeccCcccc-ccHHHHhccCC--CCCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGK--DDATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~--~~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
|||||++.++. -|++||+.+.. ...++ +.+.++++..++.+..++. ...||||||||++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~-----------~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRL-----------AGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHHH
Confidence 99999998886 59999997631 01222 2345566777776554332 3579999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||+.+|+|+||||||++||+.+.+.+.+.|+++. +|+|+|++||.++.+.. ||+|++|++|++++.|+.++|.++
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999998864 57999999999998865 999999999999999999999765
No 319
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-36 Score=308.99 Aligned_cols=197 Identities=30% Similarity=0.508 Sum_probs=178.2
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcccc----CCChHHHhhceeEEeccCcccc-ccHH
Q 001371 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK----EFQLQWIRKKIGLVSQEPVLFT-GSIK 477 (1091)
Q Consensus 403 ~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~----~~~~~~lr~~ia~V~Q~~~Lf~-~TIr 477 (1091)
=++||+.+.-..+||-|+||||||||+|+|.|+..|++|.|.+||.-+. .+.+.--|++||||+||.-||. -|||
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 3688888887899999999999999999999999999999999998664 4556667889999999999996 6999
Q ss_pred HHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHh
Q 001371 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557 (1091)
Q Consensus 478 eNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~t 557 (1091)
-|++||....+.++..+++..-++...+++.| .+||||+|||+||+|||+.+|++|+||||.|+||-..
T Consensus 95 gNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 95 GNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred cchhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 99999988777889999999999999999988 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC--CCeEEEEccCchhh-hccCeEEEEeCCEEeeecChhHHhcC
Q 001371 558 EKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 558 e~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
.+++.-.|+++.+ +--++.|||.+..+ +-||+|++|++|+|...|.-+|..+.
T Consensus 164 K~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 164 KREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 9999888877664 34688999999876 45999999999999999999999876
No 320
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-36 Score=361.06 Aligned_cols=211 Identities=20% Similarity=0.332 Sum_probs=169.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh-HHHhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~-~~lr~~ 461 (1091)
-|+++|+++.|. .+|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|.++...+. +.+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999999762 38999999999999999999999999999999999999999999999998876543 456788
Q ss_pred eeEEeccC---cccc-ccHHHHhccCCCC-----------CCHHHHHHHHHHcccHHHHhhCCCCcc-cccccCCCCCCh
Q 001371 462 IGLVSQEP---VLFT-GSIKDNIAYGKDD-----------ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSG 525 (1091)
Q Consensus 462 ia~V~Q~~---~Lf~-~TIreNI~~g~~~-----------~~~~~i~~a~~~a~l~~~i~~lp~G~~-T~vge~G~~LSG 525 (1091)
++||+|++ .+|. -|++||+.++... .+.++.. ..+.+.++.+ |+. -........|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQ-----RTAENQRELL--ALKCHSVNQNITELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHH-----HHHHHHHHhc--CCCCCCccCccccCCh
Confidence 99999984 4665 5999999876320 0111110 1112333332 221 112333346999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecC
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt 603 (1091)
|||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|+|++.|+
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998764 4789999999998875 599999999999999887
Q ss_pred hh
Q 001371 604 HS 605 (1091)
Q Consensus 604 ~~ 605 (1091)
..
T Consensus 493 ~~ 494 (510)
T PRK09700 493 NR 494 (510)
T ss_pred Cc
Confidence 63
No 321
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=6.4e-36 Score=337.44 Aligned_cols=184 Identities=35% Similarity=0.575 Sum_probs=157.8
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccc-cHHHHhccCCC--CCC----H
Q 001371 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKD--DAT----T 489 (1091)
Q Consensus 417 IVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~ 489 (1091)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++++||+|++.+|.. |++|||.|+.. ..+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987664 46789999999999975 99999998632 122 2
Q ss_pred HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc
Q 001371 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569 (1091)
Q Consensus 490 ~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 569 (1091)
+++.++++..++.++.++. ..+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRK-----------PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhcCC-----------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 3456667776665554443 35799999999999999999999999999999999999999999998865
Q ss_pred C--CCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcCCCc
Q 001371 570 V--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1091)
Q Consensus 570 ~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~~ 613 (1091)
+ ++|+|+|||++..+. .||+|++|++|+|++.|+++|+.+++..
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~ 194 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPAN 194 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 3 789999999999875 4999999999999999999999876433
No 322
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.9e-36 Score=391.34 Aligned_cols=214 Identities=21% Similarity=0.398 Sum_probs=183.1
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCcEEEECCccccCCChHHH
Q 001371 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWI 458 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~---~~~G~I~idg~~i~~~~~~~l 458 (1091)
.++++|++++|+.+ .++++|+|||+++++||++||+||||||||||+++|.|..+ |++|+|.+||+++. +.+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 47999999999632 23579999999999999999999999999999999999998 78899999999885 257
Q ss_pred hhceeEEeccCc-cccccHHHHhccCC----C-CCCHH----HHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 459 RKKIGLVSQEPV-LFTGSIKDNIAYGK----D-DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 459 r~~ia~V~Q~~~-Lf~~TIreNI~~g~----~-~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
|++++||+|++. +++.|||||+.|+. | +.+++ ++.++++..++. +-.|+.||+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHHh
Confidence 889999999875 56679999999752 2 22332 345666665553 3468999999999999999
Q ss_pred HHHHHHHHhhcCCC-EEEeeCCCCCCCHHhHHHHHHHHHHH-cCCCeEEEEccCchhh--hccCeEEEEeCC-EEeeecC
Q 001371 529 QRIAIARAILKDPR-ILLLDEATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTV--RNADMIAVIHRG-KIVEKGT 603 (1091)
Q Consensus 529 QRialARAll~~~~-IliLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i--~~aD~Iivl~~G-~Ive~Gt 603 (1091)
||++|||||+.+|+ ||+||||||+||+.+...+.+.|+++ .+|+|+|+++|+++.. ..+|+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4689999999999973 679999999997 9999999
Q ss_pred hhHH
Q 001371 604 HSKL 607 (1091)
Q Consensus 604 ~~eL 607 (1091)
..+.
T Consensus 988 ~~~~ 991 (1394)
T TIGR00956 988 LGEN 991 (1394)
T ss_pred cccc
Confidence 7543
No 323
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=279.26 Aligned_cols=212 Identities=29% Similarity=0.502 Sum_probs=179.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCc--cccCCC----hH
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI--NLKEFQ----LQ 456 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~--~i~~~~----~~ 456 (1091)
+|+++|++|.|.. ..+|.||+|+.+.|+++.+.||||+|||||++.|.=+--|.+|+..|-|. |.++.+ ..
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 5899999999964 46999999999999999999999999999999999888999999999775 444443 45
Q ss_pred HHhhceeEEeccCcccc-ccHHHHhccCCC----CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 457 WIRKKIGLVSQEPVLFT-GSIKDNIAYGKD----DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 457 ~lr~~ia~V~Q~~~Lf~-~TIreNI~~g~~----~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
.||+.+|+|+|+-.|+. -||-||+.-. | ..++ .+-.+.++.-.|.++-+++| ..|||||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enliea-p~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggq 146 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQ 146 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhh-hHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccch
Confidence 79999999999999986 6999998522 1 1122 23455667777777777777 4799999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChh
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~ 605 (1091)
.||+||||||.-+|++|++||||+||||+-...+.+.|+++. -|-|-++|||.....+. |.+++.|++|+|+|+|+++
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 999999999999999999999999999997778888888765 47899999999998765 9999999999999999987
Q ss_pred HHhc
Q 001371 606 KLVE 609 (1091)
Q Consensus 606 eL~~ 609 (1091)
-.-+
T Consensus 227 ~ft~ 230 (242)
T COG4161 227 CFTE 230 (242)
T ss_pred hccC
Confidence 6543
No 324
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9.8e-36 Score=358.37 Aligned_cols=214 Identities=21% Similarity=0.312 Sum_probs=171.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCcEEEECCccccCCCh-HHHhh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKEFQL-QWIRK 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-~~G~I~idg~~i~~~~~-~~lr~ 460 (1091)
-|+++|++++|+.+.+.++|+|+||+|++||+++|+||+|||||||+++|+|+++| ++|+|.++|.++...+. +.+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999432134699999999999999999999999999999999999995 89999999999865443 56788
Q ss_pred ceeEEeccC---cccc-ccHHHHhccCCCC-------CCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCCh
Q 001371 461 KIGLVSQEP---VLFT-GSIKDNIAYGKDD-------ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1091)
Q Consensus 461 ~ia~V~Q~~---~Lf~-~TIreNI~~g~~~-------~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSG 525 (1091)
+++||+|++ .+|. .|++||+.++... ... +++.++++..++ ++. ........|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~---~~~~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV-------KTA---SPFLPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCc-------cCC---CccCccccCCH
Confidence 999999996 4665 5999999875310 111 123333333322 111 12223357999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecC
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt 603 (1091)
|||||++||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|+..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999998888764 47899999999998864 99999999999998765
Q ss_pred hhH
Q 001371 604 HSK 606 (1091)
Q Consensus 604 ~~e 606 (1091)
-++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 443
No 325
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3e-35 Score=318.55 Aligned_cols=193 Identities=23% Similarity=0.383 Sum_probs=158.6
Q ss_pred EECCCCCCCccccceeEEee-----CCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEE
Q 001371 391 FSYPARPNEQIFSGFSISIS-----SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1091)
Q Consensus 391 f~Y~~~~~~~vL~~isl~i~-----~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V 465 (1091)
|+||+ ....|+|++|+++ +||+++|+||+|||||||+++|+|+++|++|+|.++|. +|+|+
T Consensus 1 ~~y~~--~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPT--MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCcc--cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 67874 3458999999997 68999999999999999999999999999999999984 69999
Q ss_pred eccCc-cccccHHHHhccCCCCC--CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC
Q 001371 466 SQEPV-LFTGSIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1091)
Q Consensus 466 ~Q~~~-Lf~~TIreNI~~g~~~~--~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~ 542 (1091)
+|++. .++.|++||+.+..... ..+...++++..++.+.. ......||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQIL-----------DREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99987 47899999997543211 123345566666554433 23445799999999999999999999
Q ss_pred EEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEe--eecChhHHh
Q 001371 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV--EKGTHSKLV 608 (1091)
Q Consensus 543 IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv--e~Gt~~eL~ 608 (1091)
++||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|+++..+ ..+++.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999999999999999999999988753 7999999999999875 9999999775444 455666654
No 326
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-35 Score=332.79 Aligned_cols=210 Identities=32% Similarity=0.499 Sum_probs=177.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH-Hhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~-lr~~ 461 (1091)
-++++|++.+|+ ..++|+|+||++.+||.+|++|.+|||||||+|.|.|.|+|++|+|.+||.+..-.++.+ .+.-
T Consensus 8 ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 478999999997 357999999999999999999999999999999999999999999999999999777765 4456
Q ss_pred eeEEeccCcccc-ccHHHHhccCCCCC------CHHHHHHHHHHcccHHHHhhCC--CCcccccccCCCCCChHHHHHHH
Q 001371 462 IGLVSQEPVLFT-GSIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLP--QGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 462 ia~V~Q~~~Lf~-~TIreNI~~g~~~~------~~~~i~~a~~~a~l~~~i~~lp--~G~~T~vge~G~~LSGGQkQRia 532 (1091)
|+.|.||..|+. -||.|||-+|++.. +..++.+.++. .+.++- ...+++|+ +||+||||-++
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~~~~~v~----~LsiaqrQ~Ve 155 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDIDPDTLVG----DLSIAQRQMVE 155 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCChhhhhh----hCCHHHHHHHH
Confidence 999999999986 59999999997532 33444433222 233221 22567776 59999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecCh
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 604 (1091)
||||+..+++|+|||||||+|+..-.+.+.+.++++. +|.++|+|||||+.+.. ||+|.||.||+.+..++.
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999987777777887765 78999999999998765 999999999999987773
No 327
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=355.76 Aligned_cols=210 Identities=21% Similarity=0.349 Sum_probs=170.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh-HHHhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~-~~lr~~ 461 (1091)
-|+++|+++ ++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 488999974 37999999999999999999999999999999999999999999999999887665 346778
Q ss_pred eeEEeccC---ccc-cccHHHHhccCCCC--------CCHHHHHHHHHHcccHHHHhhCCCCcc-cccccCCCCCChHHH
Q 001371 462 IGLVSQEP---VLF-TGSIKDNIAYGKDD--------ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1091)
Q Consensus 462 ia~V~Q~~---~Lf-~~TIreNI~~g~~~--------~~~~~i~~a~~~a~l~~~i~~lp~G~~-T~vge~G~~LSGGQk 528 (1091)
++||||+| .+| +.|++||+.++... .+.++.. ..+.+.++.+ |+. .........||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ-----QAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH-----HHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 354 46999999875210 1111111 1122333333 221 123444567999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~e 606 (1091)
||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|+|+..|+.++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998875 4789999999999876 499999999999999998776
Q ss_pred H
Q 001371 607 L 607 (1091)
Q Consensus 607 L 607 (1091)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 4
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3e-35 Score=357.17 Aligned_cols=210 Identities=29% Similarity=0.421 Sum_probs=172.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++++|++ ++++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 3789999999962 24799999999999999999999999999999999999999999999986 2479
Q ss_pred eEEeccCcccc-ccHHHHhccCCCC------------------CC--------HHHHHHHHHHcccHH-------HHhhC
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGKDD------------------AT--------TEEIRVATELANAAK-------FIDKL 508 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~~~------------------~~--------~~~i~~a~~~a~l~~-------~i~~l 508 (1091)
+||+|+|+++. .|++|||.++... .. .+++.++++.+++++ .++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999986 5999999875210 01 123555555555432 23333
Q ss_pred CCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-c
Q 001371 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1091)
Q Consensus 509 p~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-a 587 (1091)
|++ .......+||||||||++||||++.+|++|||||||++||+++.+.+.+.|++. ++|+|+|||++..+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 123445689999999999999999999999999999999999999999999875 3699999999999876 8
Q ss_pred CeEEEEeCCEEe-eecChhHHhcC
Q 001371 588 DMIAVIHRGKIV-EKGTHSKLVED 610 (1091)
Q Consensus 588 D~Iivl~~G~Iv-e~Gt~~eL~~~ 610 (1091)
|+|++|++|+++ ..|++++..+.
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLEQ 249 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHHH
Confidence 999999999976 67999987653
No 329
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.5e-35 Score=322.05 Aligned_cols=201 Identities=21% Similarity=0.327 Sum_probs=159.3
Q ss_pred EeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEE-----------ECCccccCCCh
Q 001371 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGINLKEFQL 455 (1091)
Q Consensus 387 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~-----------idg~~i~~~~~ 455 (1091)
.||+|+|+. ..++|+|+|+ +++||+++|+||+|||||||+++|+|+++|++|+|. ++|+++.+...
T Consensus 4 ~~~~~~y~~--~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 368899963 2369999994 999999999999999999999999999999999996 88998877644
Q ss_pred HHHhh--ceeEEeccCccccccHHHHhccCCCCC-CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 001371 456 QWIRK--KIGLVSQEPVLFTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 456 ~~lr~--~ia~V~Q~~~Lf~~TIreNI~~g~~~~-~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRia 532 (1091)
+..|. .++|++|++.++..++.+|+.+.-... .++++.++++..++.+ .+.....+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH-----------VLDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHH
Confidence 33333 478888877766655555544321111 2345556666655433 344456789999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCeEEEEeCCEEeeec
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 602 (1091)
||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|+ |++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999988753 7999999999999885 99999994 6676544
No 330
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=355.55 Aligned_cols=212 Identities=24% Similarity=0.339 Sum_probs=170.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh-HHHhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~-~~lr~~ 461 (1091)
.++++|+++. .+++|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++...+. +..|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4889999842 48999999999999999999999999999999999999999999999998875433 456788
Q ss_pred eeEEeccCc---ccc-ccHHHHhccCCCCC--------CHHHHHHHHHHcccHHHHhhCCCCcc-cccccCCCCCChHHH
Q 001371 462 IGLVSQEPV---LFT-GSIKDNIAYGKDDA--------TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1091)
Q Consensus 462 ia~V~Q~~~---Lf~-~TIreNI~~g~~~~--------~~~~i~~a~~~a~l~~~i~~lp~G~~-T~vge~G~~LSGGQk 528 (1091)
++|++|++. +|. .|+.||+.++.... +..+-.+ .+.+.+..+ |++ ........+||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAE-----NADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHH-----HHHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999972 554 79999998753210 1111111 112333333 221 112233457999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhH
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~e 606 (1091)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .+.|+|+|||+++.+. .||+|++|++|++++.|+.+|
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998865 4789999999999885 599999999999999999887
Q ss_pred Hh
Q 001371 607 LV 608 (1091)
Q Consensus 607 L~ 608 (1091)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 54
No 331
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.6e-35 Score=355.49 Aligned_cols=210 Identities=29% Similarity=0.416 Sum_probs=167.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++++|++ ++++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 24799999999999999999999999999999999999999999999975 2479
Q ss_pred eEEeccCccccc-cHHHHhccCCCCC----------------C----------HHHHHHHHHHcc-------cHHHHhhC
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKDDA----------------T----------TEEIRVATELAN-------AAKFIDKL 508 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~~~----------------~----------~~~i~~a~~~a~-------l~~~i~~l 508 (1091)
+||+|+|.+++. |++||+.++.... . ..++.+.++.++ +.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999875 9999998752100 0 001111111111 12222222
Q ss_pred CCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-c
Q 001371 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1091)
Q Consensus 509 p~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-a 587 (1091)
|++ .......+||||||||++||||++++|++|||||||++||+.+...+.+.|+++ +.|+|+|||++..+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 123344579999999999999999999999999999999999999999999886 3699999999999875 9
Q ss_pred CeEEEEeCCEEe-eecChhHHhcC
Q 001371 588 DMIAVIHRGKIV-EKGTHSKLVED 610 (1091)
Q Consensus 588 D~Iivl~~G~Iv-e~Gt~~eL~~~ 610 (1091)
|+|++|++|+++ ..|++++..+.
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~~ 251 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLEQ 251 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHHH
Confidence 999999999986 78999987653
No 332
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-35 Score=354.36 Aligned_cols=209 Identities=24% Similarity=0.433 Sum_probs=166.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 47999999999999999999999999999999999999999999999982 4699
Q ss_pred EEeccCcccc-ccHHHHhccCCCC----------------CCHH---HHHHHH----------HHcccHHHHhhCCCCcc
Q 001371 464 LVSQEPVLFT-GSIKDNIAYGKDD----------------ATTE---EIRVAT----------ELANAAKFIDKLPQGID 513 (1091)
Q Consensus 464 ~V~Q~~~Lf~-~TIreNI~~g~~~----------------~~~~---~i~~a~----------~~a~l~~~i~~lp~G~~ 513 (1091)
||+|++.+|. -|++||+.++... ...+ .+.+.. ....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999998876 4999999875310 0000 000000 001122333333 332
Q ss_pred ccc-ccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEE
Q 001371 514 TLV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIA 591 (1091)
Q Consensus 514 T~v-ge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Ii 591 (1091)
... .....+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|.+ .++|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 211 123468999999999999999999999999999999999999999999875 47899999999998865 99999
Q ss_pred EEeCCEE-eeecChhHHhcC
Q 001371 592 VIHRGKI-VEKGTHSKLVED 610 (1091)
Q Consensus 592 vl~~G~I-ve~Gt~~eL~~~ 610 (1091)
+|++|++ ++.|++++.++.
T Consensus 224 ~l~~g~i~~~~g~~~~~~~~ 243 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMTA 243 (530)
T ss_pred EEeCCEEEEecCCHHHHHHH
Confidence 9999999 478999988653
No 333
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-35 Score=352.68 Aligned_cols=201 Identities=22% Similarity=0.366 Sum_probs=172.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++| ++++
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 5999999999963 4699999999999999999999999999999999999999999999998 3579
Q ss_pred eEEeccCc--ccc-ccHHHHhccCC-CCCCHHHHHHHHHHcccH-HHHhhCCCCcccccccCCCCCChHHHHHHHHHHHh
Q 001371 463 GLVSQEPV--LFT-GSIKDNIAYGK-DDATTEEIRVATELANAA-KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1091)
Q Consensus 463 a~V~Q~~~--Lf~-~TIreNI~~g~-~~~~~~~i~~a~~~a~l~-~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAl 537 (1091)
+||+|++. ++. .|++||+.+.. +...++++.++++..++. +.. .....+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-----------KKSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-----------cCcccccCHHHHHHHHHHHHH
Confidence 99999984 443 69999986532 223455677777777663 222 233457999999999999999
Q ss_pred hcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEe-eecChhHHhcC
Q 001371 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLVED 610 (1091)
Q Consensus 538 l~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv-e~Gt~~eL~~~ 610 (1091)
+++|+||||||||++||+.+.+.+.+.|+++ +.|+|+|||++..+.. ||+|++|++|+++ ..|+++++++.
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999886 4699999999998875 9999999999998 78999888754
No 334
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=5.5e-35 Score=290.18 Aligned_cols=143 Identities=38% Similarity=0.598 Sum_probs=134.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
++++|++++|++ .++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.+||. ..++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999963 36999999999999999999999999999999999999999999999993 4799
Q ss_pred EEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCE
Q 001371 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1091)
Q Consensus 464 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~I 543 (1091)
|++| ||||||||++||||++++|++
T Consensus 67 ~~~~-------------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 67 YFEQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEcc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 9999 999999999999999999999
Q ss_pred EEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCE
Q 001371 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1091)
Q Consensus 544 liLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~ 597 (1091)
+||||||++||+.+...+.+.|+++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 5799999999999865 89999999985
No 335
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=4.1e-35 Score=311.48 Aligned_cols=186 Identities=17% Similarity=0.248 Sum_probs=154.6
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEE-ECCccccCCChHHHhhceeEEeccCccccc-cHHH
Q 001371 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-IDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKD 478 (1091)
Q Consensus 401 vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~-idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~-TIre 478 (1091)
+|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|.. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 78999999999999999999999999999999999999999997 777432 23467788875 9999
Q ss_pred HhccCCC--CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHH
Q 001371 479 NIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1091)
Q Consensus 479 NI~~g~~--~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~ 556 (1091)
||.+... ..+.++..+.+. ....|++..++.++ .||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY------QLTQLEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH------HHhChhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9987422 233444333221 12345555666665 49999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhc
Q 001371 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1091)
Q Consensus 557 te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~ 609 (1091)
+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|+|++.|+-+++.+
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 99999998876667789999999999986 699999999999999999888754
No 336
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-35 Score=286.33 Aligned_cols=220 Identities=27% Similarity=0.478 Sum_probs=187.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++||+.+|. ++.+|+++|++||+|+.++|+||+|+|||||+..+.|+.++++|+|.+||.++.+.+.++|-+.++
T Consensus 2 I~i~nv~K~y~---~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYG---TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhC---CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 68899999996 458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcccc-ccHHHHhccCCCCCC--------HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 464 LVSQEPVLFT-GSIKDNIAYGKDDAT--------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 464 ~V~Q~~~Lf~-~TIreNI~~g~~~~~--------~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
+.-|+..+-. -||||=+.||+=.++ ..-+.+|++--+|.+. .+.|- ..||||||||-=||
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l----~dryL-------d~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDL----SDRYL-------DELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccch----HHHhH-------Hhcccchhhhhhhh
Confidence 9999998765 599999999963232 2335566666555432 11221 35999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChhHHhcCC
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~ 611 (1091)
-.+.+|.|.++||||..+||......+.+.++++. -+||+++|-|...+.. .+|+|+-|+||+++.+|+++|+++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~- 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP- 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH-
Confidence 99999999999999999999987777777777654 3799999999999875 5999999999999999999999975
Q ss_pred CchhHHHH
Q 001371 612 EGAYSQLI 619 (1091)
Q Consensus 612 ~~~y~~l~ 619 (1091)
....+++
T Consensus 227 -~~L~eiy 233 (252)
T COG4604 227 -EILSEIY 233 (252)
T ss_pred -HHHHHHh
Confidence 3444444
No 337
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=9.1e-32 Score=326.74 Aligned_cols=315 Identities=16% Similarity=0.180 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHH
Q 001371 770 LGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNIS 849 (1091)
Q Consensus 770 l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~ 849 (1091)
+.++..++.+++.++....+.+...++|.++|+++++.|.+||+ .+++|++++|+++|++.+++.+...+..++..++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~ 139 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALV 139 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777778888889999999999999999999999999 6789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHH
Q 001371 850 TAAAGLIIAFTASWQLALIILVMLPLIGVSG-YTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLY 928 (1091)
Q Consensus 850 ~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~ 928 (1091)
.+++.+++++..+|++++++++.+|++.+.. ++..+..+...+..+.........+.|.++|++|||+|++|+++.++|
T Consensus 140 ~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~ 219 (529)
T TIGR02868 140 VGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQV 219 (529)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHH
Confidence 8888888889999999988887777765543 444444344444444455666788999999999999999999999999
Q ss_pred HHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Q 001371 929 KKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNK 1008 (1091)
Q Consensus 929 ~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1091)
++..+...+...+.....+...++...+......+.+|+|..++..|.++.+.+.............+............
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (529)
T TIGR02868 220 EAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTR 299 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888877777777776666666666666677788999888889888776655444433333344444455667788
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCC-CCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCcccc
Q 001371 1009 AKSAAASIFAIIDRESKIDPSDES-GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQL 1087 (1091)
Q Consensus 1009 ~~~aa~~i~~~i~~~~~~~~~~~~-~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~ 1087 (1091)
+..+..++.++++.+++.+..... +...++..|.|+|+||+|+|++++ +||+|+||+|+|||++|||||||||||||
T Consensus 300 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~--~vL~~isl~i~~G~~vaIvG~SGsGKSTL 377 (529)
T TIGR02868 300 VRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSP--PVLDGVSLDLPPGERVAILGPSGSGKSTL 377 (529)
T ss_pred HHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCC--ceeecceEEEcCCCEEEEECCCCCCHHHH
Confidence 888999999988765432221111 111122467899999999997543 59999999999999999999999999997
Q ss_pred c
Q 001371 1088 T 1088 (1091)
Q Consensus 1088 ~ 1088 (1091)
-
T Consensus 378 l 378 (529)
T TIGR02868 378 L 378 (529)
T ss_pred H
Confidence 3
No 338
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=8.1e-32 Score=325.93 Aligned_cols=320 Identities=21% Similarity=0.273 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHH
Q 001371 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALAR 843 (1091)
Q Consensus 764 ~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~ 843 (1091)
...++++++...++.++|.+.+...+-|....+-.+.|++++|.|++||. .+++|.+++|+ +|.+.|.+.+..+...
T Consensus 197 ~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~-~el~~Ir~flt~~~l~ 273 (709)
T COG2274 197 AIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRV-RELEQIREFLTGSILT 273 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHH-HHHHHHHHHHHHHHHH
Confidence 45556677888899999999999999999999999999999999999999 57799999999 5999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHH
Q 001371 844 IVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEK 923 (1091)
Q Consensus 844 ~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~ 923 (1091)
.+--+..++..++++++++|+++|++++.+|+.++..++..++.+...+..-.+.....+.+.|++.|+.||++.+.|.+
T Consensus 274 ~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~ 353 (709)
T COG2274 274 LIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPR 353 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHH
Confidence 88888888888888999999999999999999999988888888777766666777777889999999999999999999
Q ss_pred HHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhccc
Q 001371 924 VMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFS 1003 (1091)
Q Consensus 924 f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1091)
|..++++...+..+.+++........-.+...+.-....+.+|+|+.++..|.++.+.++...+........+....+..
T Consensus 354 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~ 433 (709)
T COG2274 354 FRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLW 433 (709)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999998888888777776666666666677789999999999999999887776655555556667777778
Q ss_pred ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCC
Q 001371 1004 SDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHS 1083 (1091)
Q Consensus 1004 ~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~ 1083 (1091)
.+++....+..++..+++.+++.+.... +...++..|+|+|+||+|+|+++++ +||+|+|++|+|||+|||||+||||
T Consensus 434 ~~~q~~~~~~~rL~dil~~~~E~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~~~-~vL~~isL~I~~Ge~vaIvG~SGsG 511 (709)
T COG2274 434 TDFQQAKVALERLGDILDTPPEQEGDKT-LIHLPKLQGEIEFENVSFRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSG 511 (709)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccc-cccccccCceEEEEEEEEEeCCCCc-chhhceeEEeCCCCEEEEECCCCCC
Confidence 8999999999999999998776544332 2334567999999999999986644 6999999999999999999999999
Q ss_pred ccccc
Q 001371 1084 LKQLT 1088 (1091)
Q Consensus 1084 ~~~~~ 1088 (1091)
||||.
T Consensus 512 KSTL~ 516 (709)
T COG2274 512 KSTLL 516 (709)
T ss_pred HHHHH
Confidence 99985
No 339
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.9e-34 Score=346.74 Aligned_cols=211 Identities=18% Similarity=0.344 Sum_probs=170.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHH-Hhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~-lr~~ 461 (1091)
-|+++|++. .+|+|+||+|++|+++||+||+|||||||+++|.|+++|++|+|.++|.++...+... +|..
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 2699999999999999999999999999999999999999999999999998776654 4668
Q ss_pred eeEEeccC---cccc-ccHHHHhccCC----CC-CCHHHHHHHHHHcccHHHHhhCCCCcc-cccccCCCCCChHHHHHH
Q 001371 462 IGLVSQEP---VLFT-GSIKDNIAYGK----DD-ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 462 ia~V~Q~~---~Lf~-~TIreNI~~g~----~~-~~~~~i~~a~~~a~l~~~i~~lp~G~~-T~vge~G~~LSGGQkQRi 531 (1091)
|+||||++ -+|. .|+++|+.... +. ....+.++ .+.+.++.+ |+. .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENA-----VLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHH-----HHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999986 3665 59999985320 10 01111111 122333333 222 223344457999999999
Q ss_pred HHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHh
Q 001371 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 532 alARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
+||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|+..|+.+++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999999999999998864 47899999999999865 9999999999999999887765
No 340
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5.9e-34 Score=316.06 Aligned_cols=209 Identities=29% Similarity=0.516 Sum_probs=174.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh-HHHhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~-~~lr~~ 461 (1091)
.++++|++..|| ...+++||||++++||+.|+.|++|+|||||++.|.|+|+|++|+|.+||++++=-++ +..|.-
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999997 3568999999999999999999999999999999999999999999999999986665 467788
Q ss_pred eeEEeccCccccc-cHHHHhccCCCCC-----CHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 462 IGLVSQEPVLFTG-SIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~-TIreNI~~g~~~~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
||+|.|.+.|+.. |+.|||.+|.+.. +..+..+- +.+..++. |++-..-+.-..||-|||||+-|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~-----i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-----IKELSERY--GLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHH-----HHHHHHHh--CCCCCccceeecCCcchhHHHHHHH
Confidence 9999999999975 9999999998632 22222111 12222221 3333334444569999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeee
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~ 601 (1091)
|||++|+|||||||||-|-|..-+.+.+.++++. .|+|+|+|||+|..++. ||++-||.+|+++..
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt 221 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEee
Confidence 9999999999999999999987777777887764 68999999999999876 999999999998644
No 341
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.6e-34 Score=345.13 Aligned_cols=206 Identities=24% Similarity=0.302 Sum_probs=166.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCcEEEECCccccC-CChHHHhh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKE-FQLQWIRK 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-~~G~I~idg~~i~~-~~~~~lr~ 460 (1091)
-|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|+|+.+| ++|+|.++|.++.. .+...+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 5999999999963 3699999999999999999999999999999999998875 69999999987632 23345678
Q ss_pred ceeEEeccCcccc---ccHHHHhccCCC-------CCC---HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 461 KIGLVSQEPVLFT---GSIKDNIAYGKD-------DAT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~---~TIreNI~~g~~-------~~~---~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
+|+|++|++.++. .|+++|+.++.. ... ++++.++++..++.+. ........|||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq 406 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWGQ 406 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHHH
Confidence 9999999987642 478887754311 011 2345555666555431 1222335799999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-CC-eEEEEccCchhhhc--cCeEEEEeCCEEeee
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NR-TTVIVAHRLSTVRN--ADMIAVIHRGKIVEK 601 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~-T~I~ItHrls~i~~--aD~Iivl~~G~Ive~ 601 (1091)
|||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++ |+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 407 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 407 QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999988753 44 69999999999964 899999999999864
No 342
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=339.41 Aligned_cols=212 Identities=18% Similarity=0.312 Sum_probs=167.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChH-HHhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ-WIRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~-~lr~~ 461 (1091)
.|+++|++++| +++|+|+||+|++||+++|+||+|||||||+++|.|+.+|++|+|.++|.++...+.. .+|+.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 58999999975 2599999999999999999999999999999999999999999999999999876654 45778
Q ss_pred eeEEeccC---cccc-ccHHHHhccC-----CCC---CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 462 IGLVSQEP---VLFT-GSIKDNIAYG-----KDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 462 ia~V~Q~~---~Lf~-~TIreNI~~g-----~~~---~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
++|+||++ .+|. .|+++|+.+. .+. .+.++..+ .+.+.++.+.-+. -.......+|||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~-~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSMRVKT-PGHRTQIGSLSGGNQQ 398 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhcCccC-CCcccccccCCcHHHH
Confidence 99999996 3555 4777664322 110 11111111 1223344431110 1134445679999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChh
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~ 605 (1091)
|++||||+.++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||++++|++|+++..++.+
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999999999997764 5799999999999885 59999999999999877664
No 343
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-33 Score=283.99 Aligned_cols=154 Identities=41% Similarity=0.689 Sum_probs=144.5
Q ss_pred EEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEE
Q 001371 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1091)
Q Consensus 386 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V 465 (1091)
++|++|+|++ .++|+++||+|++|+.++|+|++|||||||+++|.|+++|++|+|.++|.++.+.....+++.++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6899999964 3699999999999999999999999999999999999999999999999999888777888999999
Q ss_pred eccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEE
Q 001371 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545 (1091)
Q Consensus 466 ~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~Ili 545 (1091)
+| ||||||||++||||+..+|+++|
T Consensus 79 ~q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 79 PQ-------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred ee-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 99 99999999999999999999999
Q ss_pred eeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCeEEEEeCCE
Q 001371 546 LDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1091)
Q Consensus 546 LDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~-aD~Iivl~~G~ 597 (1091)
|||||++||..+...+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999987654 4899999999999988 59999999875
No 344
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.2e-30 Score=327.15 Aligned_cols=360 Identities=16% Similarity=0.195 Sum_probs=270.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMC 800 (1091)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~ 800 (1091)
+...++++++..+......+++..+.+....... ......+...++++.++..++.+++.++..+.+.+...++|.++
T Consensus 158 ~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (708)
T TIGR01193 158 IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSY 235 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444333333344555555554433211 11122233444555566777888899999999999999999999
Q ss_pred HHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001371 801 FEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSG 880 (1091)
Q Consensus 801 ~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~ 880 (1091)
|+++++.|++||+ .+++|++++|++ |.+.+.+.+...+..++..++.+++.+++++..+|++++++++++|+.++..
T Consensus 236 ~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~ 312 (708)
T TIGR01193 236 IKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVII 312 (708)
T ss_pred HHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 678999999998 8888887777776666667777777777788899999999999999888887
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001371 881 YTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAF 960 (1091)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~ 960 (1091)
++..+..+...+............+.|+++|+.|||+||.|+++.+++.+..+...+...+.....+...++...+....
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (708)
T TIGR01193 313 ILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLIL 392 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666666666777788899999999999999999999999998887777776666666555555555555555
Q ss_pred HHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccc
Q 001371 961 YAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVK 1040 (1091)
Q Consensus 961 ~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~ 1040 (1091)
..+.+|+|+.++..|.++.++++............+.+..........+..+..++.++++.+++.+.... ....++.+
T Consensus 393 ~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~-~~~~~~~~ 471 (708)
T TIGR01193 393 NVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKK-RTELNNLN 471 (708)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc-ccCCCCCC
Confidence 66778999999999999998877665555544555666667777888888999999998876544322211 11123457
Q ss_pred eeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1041 G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
|.|+|+||+|+|+++ .+||+|+||+|+|||++|||||||||||||-
T Consensus 472 ~~I~~~~vsf~y~~~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLl 517 (708)
T TIGR01193 472 GDIVINDVSYSYGYG--SNILSDISLTIKMNSKTTIVGMSGSGKSTLA 517 (708)
T ss_pred CcEEEEEEEEEcCCC--CcceeceeEEECCCCEEEEECCCCCCHHHHH
Confidence 899999999999743 3699999999999999999999999999973
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.8e-33 Score=342.26 Aligned_cols=199 Identities=27% Similarity=0.396 Sum_probs=166.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++|+|++ .+++|+|+||+|++|++++|+||+|||||||+++|+|+.+|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 5999999999963 24699999999999999999999999999999999999999999999876 3479
Q ss_pred eEEeccCccccccHHHHhccC----CCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 463 GLVSQEPVLFTGSIKDNIAYG----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 463 a~V~Q~~~Lf~~TIreNI~~g----~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
+|++|++. ...++.+|+.+. .+..+++++.++++..++.+... ......||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHHHHHHHHh
Confidence 99999873 233555563311 23456778888888887754221 1234579999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEe-eecChhHH
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKL 607 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv-e~Gt~~eL 607 (1091)
++|++|||||||++||+.+...+.+.+.+. + .|+|+|||++..+.. ||+|++|++|+|+ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999988888888765 3 599999999999875 9999999999998 57887765
No 346
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.6e-33 Score=337.24 Aligned_cols=202 Identities=25% Similarity=0.344 Sum_probs=164.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++++|++ .++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.+++ ++ +|
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999963 4699999999999999999999999999999999999999999999954 21 69
Q ss_pred eEEeccC-cccc-ccHHHHhccCCCC----CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 463 GLVSQEP-VLFT-GSIKDNIAYGKDD----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 463 a~V~Q~~-~Lf~-~TIreNI~~g~~~----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
|||||++ .++. -|++||+.++... ..+++...+++..++.+. ........||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG----------DQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence 9999997 5654 5999999876321 112333444444443211 1122335799999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeC-CEEee-ecChhHHhcC
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR-GKIVE-KGTHSKLVED 610 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~-G~Ive-~Gt~~eL~~~ 610 (1091)
++.+|++|||||||++||+.+...+.+.|.++ + .|+|+|||.+..+.. ||+|++|++ |++.+ .|+++++++.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999999999999999999999886 3 499999999998765 999999986 78874 7888777543
No 347
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.5e-33 Score=282.96 Aligned_cols=156 Identities=24% Similarity=0.386 Sum_probs=129.3
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHH
Q 001371 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1091)
Q Consensus 398 ~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIr 477 (1091)
..++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. ... .|++++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 457999999999999999999999999999999996 369999998752 111 2446888887
Q ss_pred HHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC--CCEEEeeCCCCCCCH
Q 001371 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD--PRILLLDEATSALDA 555 (1091)
Q Consensus 478 eNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~--~~IliLDE~tSaLD~ 555 (1091)
.++ ++.++-++. ....+..+||||||||++||||++++ |+++||||||++||+
T Consensus 68 ---------------~~~---------l~~~~L~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 ---------------LQF---------LIDVGLGYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred ---------------HHH---------HHHcCCCcc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 123 333322211 25566789999999999999999999 999999999999999
Q ss_pred HhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEEeCCE
Q 001371 556 ESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1091)
Q Consensus 556 ~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~ 597 (1091)
++.+.+.+.|+++. .++|+|+|||+++.+..||+|++|++|+
T Consensus 123 ~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 99999999998865 5899999999999999999999996643
No 348
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.4e-33 Score=362.03 Aligned_cols=215 Identities=24% Similarity=0.409 Sum_probs=179.9
Q ss_pred CcEEEEeEEEECCCC----------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCcEEEECCcc
Q 001371 382 GDIELRDVYFSYPAR----------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGIN 449 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~----------~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~--~~G~I~idg~~ 449 (1091)
..++++||++..+.. +...+|+|+|++++||+++||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 368999999998531 124699999999999999999999999999999999999773 78999999988
Q ss_pred ccCCChHHHhhceeEEeccCcccc-ccHHHHhccCC----C-CCCHH----HHHHHHHHcccHHHHhhCCCCcccccccC
Q 001371 450 LKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGK----D-DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1091)
Q Consensus 450 i~~~~~~~lr~~ia~V~Q~~~Lf~-~TIreNI~~g~----~-~~~~~----~i~~a~~~a~l~~~i~~lp~G~~T~vge~ 519 (1091)
.++ ..+|+.+|||+|++.++. .||+|||.|+. | +.+.+ .+.++++..++.+. .|+.+|..
T Consensus 946 ~~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~ 1015 (1470)
T PLN03140 946 KKQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLP 1015 (1470)
T ss_pred CCh---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCC
Confidence 643 456788999999987776 59999998752 2 22322 35667777666543 47788765
Q ss_pred C-CCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchh--hhccCeEEEEeC
Q 001371 520 G-TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIHR 595 (1091)
Q Consensus 520 G-~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~--i~~aD~Iivl~~ 595 (1091)
+ ..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +++|+|+++|+++. ...+|++++|++
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1095 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcC
Confidence 5 5799999999999999999999999999999999999999999998864 57999999999984 467999999986
Q ss_pred -CEEeeecChhH
Q 001371 596 -GKIVEKGTHSK 606 (1091)
Q Consensus 596 -G~Ive~Gt~~e 606 (1091)
|+++..|+..+
T Consensus 1096 gG~~v~~G~~~~ 1107 (1470)
T PLN03140 1096 GGQVIYSGPLGR 1107 (1470)
T ss_pred CCEEEEECCccc
Confidence 89999999754
No 349
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.5e-30 Score=323.16 Aligned_cols=319 Identities=16% Similarity=0.158 Sum_probs=258.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHH
Q 001371 763 WALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALA 842 (1091)
Q Consensus 763 ~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~ 842 (1091)
+...++++.++..++.+++.+.....+.+...++|.++|+++++.|++||+ .+++|++++|++ |.+.+++.+...+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~ 254 (686)
T TIGR03797 178 IALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTL 254 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHH
Confidence 345566666777788888999999999999999999999999999999999 678999999997 89999998888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchH
Q 001371 843 RIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEE 922 (1091)
Q Consensus 843 ~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~ 922 (1091)
..+..+..+++.+++++.++|++++++++++|+.++..++..+......+............+.|++.|+.|||+|+.|+
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 334 (686)
T TIGR03797 255 TTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAEN 334 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccH
Confidence 77777777777788888899999999988888887776666666555555555666677888999999999999999999
Q ss_pred HHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcc
Q 001371 923 KVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSF 1002 (1091)
Q Consensus 923 ~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1091)
++.+++.+..+...+...+..........+...+......+.+|+|+.++..|.++.++++............+......
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~ 414 (686)
T TIGR03797 335 RAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNT 414 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877777777666666666666666777889999999999999988776665555445556666666
Q ss_pred cccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCC
Q 001371 1003 SSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFH 1082 (1091)
Q Consensus 1003 ~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~ 1082 (1091)
......+..+..++.++++.+++.+... ..+++.+|.|+|+||+|+|++. +.+||+|+||+|+|||++||||||||
T Consensus 415 ~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGs 490 (686)
T TIGR03797 415 LISILAVIPLWERAKPILEALPEVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGS 490 (686)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCC
Confidence 7788888999999998887654332211 1122346899999999999743 34699999999999999999999999
Q ss_pred Cccccc
Q 001371 1083 SLKQLT 1088 (1091)
Q Consensus 1083 ~~~~~~ 1088 (1091)
|||||.
T Consensus 491 GKSTLl 496 (686)
T TIGR03797 491 GKSTLL 496 (686)
T ss_pred CHHHHH
Confidence 999974
No 350
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.2e-33 Score=286.09 Aligned_cols=145 Identities=28% Similarity=0.391 Sum_probs=131.5
Q ss_pred EeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEe
Q 001371 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS 466 (1091)
Q Consensus 387 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~ 466 (1091)
.|++++|++ .++++++ |++++||+++|+||+|||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 4 ~~l~~~~~~---~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEc
Confidence 578999953 4689884 999999999999999999999999999999999999999995 389999
Q ss_pred ccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEe
Q 001371 467 QEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546 (1091)
Q Consensus 467 Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliL 546 (1091)
|++. ||||||||++||||++++|+++||
T Consensus 68 q~~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 68 QYID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred ccCC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8753 999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHc-C-CCeEEEEccCchhhhc-cCeEEEEeCCEEe
Q 001371 547 DEATSALDAESEKVVQEALDRIM-V-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1091)
Q Consensus 547 DE~tSaLD~~te~~i~~~l~~~~-~-~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv 599 (1091)
||||++||+.+.+.+.+.|+++. + ++|+|+|||++..+.. ||+|++|+++..+
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 99999999999999999998864 3 3899999999999874 9999999987554
No 351
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-33 Score=340.01 Aligned_cols=199 Identities=25% Similarity=0.370 Sum_probs=166.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++++|++ +++|+|+||+|++|+++||+||+|||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999741 269
Q ss_pred eEEeccC--cccc-ccHHHHhccCCCCCCHHHHHHHHHHcccHH-HHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 463 GLVSQEP--VLFT-GSIKDNIAYGKDDATTEEIRVATELANAAK-FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 463 a~V~Q~~--~Lf~-~TIreNI~~g~~~~~~~~i~~a~~~a~l~~-~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
+|++|++ .+.. .|+.+|+....+...++++.++++..++.+ .. +.+ ...||||||||++||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-------~~~----~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKV-------TEE----TRRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHh-------cCc----hhhCCHHHHHHHHHHHHHh
Confidence 9999985 3443 488888752223334455666666665532 22 223 3479999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEe-eecChhHHh
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLV 608 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv-e~Gt~~eL~ 608 (1091)
++|++|||||||++||+.+...+.+.|.++ + .|+|+|||++..+.. ||+|++|++|+|+ ..|++++..
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999999999999886 3 599999999999865 9999999999997 688888764
No 352
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=4.2e-30 Score=312.20 Aligned_cols=359 Identities=14% Similarity=0.114 Sum_probs=256.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 722 LAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCF 801 (1091)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~ 801 (1091)
.++++++++.+...+...+..+..++........ ......+...+++++++..++.+++.+.....+.+...++|.++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 84 (529)
T TIGR02857 6 ALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLL 84 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555566656544211111 112334556666777778888888999999999999999999999
Q ss_pred HHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001371 802 EKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGY 881 (1091)
Q Consensus 802 ~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~ 881 (1091)
+++++.|.+||+ .+++|+++||+++|++.+++.+...+..++..++.+++.+++++..+|++++++++.+|+.++..+
T Consensus 85 ~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~ 162 (529)
T TIGR02857 85 AAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMI 162 (529)
T ss_pred HHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 678999999999999999999988888888888888888888888999999998888888777666
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001371 882 TQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFY 961 (1091)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~ 961 (1091)
+..+..+...+..+.........+.|+++|+++||+|+.|+++.++|.+..+...+...+........-.+...+.....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (529)
T TIGR02857 163 LIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSV 242 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555544445555555566778999999999999999999999999988776666555444433332222222222222
Q ss_pred HH-HHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccc
Q 001371 962 AA-SFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVK 1040 (1091)
Q Consensus 962 a~-~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~ 1040 (1091)
.+ .+|.|. .+..|.++.+.++............+............+..++.++.++++.+++... . +..+++..
T Consensus 243 ~~~~~~~~~-~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~--~-~~~~~~~~ 318 (529)
T TIGR02857 243 ALVAVYIGF-RLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG--K-APVTAAPA 318 (529)
T ss_pred HHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--C-cCCCCCCC
Confidence 22 234443 4447888887666544433333334455555667888889999999998874322111 1 11111224
Q ss_pred eeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1041 G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
|.|+|+||+|+||++. .++|+|+||+|+|||++|||||||||||||-
T Consensus 319 ~~i~~~~v~f~y~~~~-~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~ 365 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRR-APALRPVSFTVPPGERVALVGPSGAGKSTLL 365 (529)
T ss_pred CeEEEEEEEEECCCCC-cccccceeEEECCCCEEEEECCCCCCHHHHH
Confidence 7899999999998653 3699999999999999999999999999973
No 353
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=9.5e-33 Score=335.31 Aligned_cols=200 Identities=24% Similarity=0.331 Sum_probs=162.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++++|++ .++|+|+||+|++|++++|+||+|||||||+++|+|+.+|++|+|.+++ ++ +|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999963 4699999999999999999999999999999999999999999999954 21 69
Q ss_pred eEEeccCc-ccc-ccHHHHhccCCCC--CC--HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 463 GLVSQEPV-LFT-GSIKDNIAYGKDD--AT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 463 a~V~Q~~~-Lf~-~TIreNI~~g~~~--~~--~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
+||+|++. ++. .|++||+.++.+. .. +.+..++++..++.+. ........||||||||++||||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence 99999973 554 5999999886421 11 2233344444443211 1223345799999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeC-CEEe-eecChhHHh
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR-GKIV-EKGTHSKLV 608 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~-G~Iv-e~Gt~~eL~ 608 (1091)
++.+|++|||||||++||+.+...+.+.|+++ . .|+|+|||++..+.. ||+|++|++ |++. ..|+++++.
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 99999999999999999999999999999886 3 499999999998875 999999987 5876 457776654
No 354
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.5e-30 Score=312.63 Aligned_cols=317 Identities=16% Similarity=0.119 Sum_probs=244.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHH
Q 001371 766 IYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIV 845 (1091)
Q Consensus 766 ~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~ 845 (1091)
.+.+++++..++.++..++....+.+...++|.++|+++++.|++||+ .+++|++++|+++|++.++..+...+..++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~ 142 (574)
T PRK11160 65 GVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLV 142 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777888888899999999999999999999999999 678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHH
Q 001371 846 QNISTAAAGLIIAFTASWQLALIILVMLPLIGVS-GYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKV 924 (1091)
Q Consensus 846 ~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f 924 (1091)
..++.+++.+++++..+|++++++++++|++++. .++..+..+...+..+.........+.|.+.|++|||+|+.|+++
T Consensus 143 ~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 222 (574)
T PRK11160 143 AALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRY 222 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHH
Confidence 9999998888889999999999887777765543 244444444444444555556677899999999999999999999
Q ss_pred HHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHH-HHHHHHHhccc
Q 001371 925 MQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMT-AIGISQSSSFS 1003 (1091)
Q Consensus 925 ~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 1003 (1091)
.++|.+..+...+...+.....+....+...+.....++.+|+|..++ .|..+.+.++.......+. ...+.......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~ 301 (574)
T PRK11160 223 RQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAF 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888887777766666666666666667788888774 6777776655433322221 11233334455
Q ss_pred ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCC
Q 001371 1004 SDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHS 1083 (1091)
Q Consensus 1004 ~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~ 1083 (1091)
.....+..++.++.++++.+++.+.++.. .+.+.+|.|+|+||+|+|+++ +.++|+|+||+|+|||++|||||||||
T Consensus 302 ~~~~~~~~s~~ri~~ll~~~~~~~~~~~~--~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsG 378 (574)
T PRK11160 302 QHLGQVIASARRINEITEQKPEVTFPTTS--TAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCG 378 (574)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCccc--CCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCC
Confidence 67778888999999998866543221111 112346899999999999754 235999999999999999999999999
Q ss_pred ccccc
Q 001371 1084 LKQLT 1088 (1091)
Q Consensus 1084 ~~~~~ 1088 (1091)
||||-
T Consensus 379 KSTL~ 383 (574)
T PRK11160 379 KSTLL 383 (574)
T ss_pred HHHHH
Confidence 99973
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.1e-32 Score=339.06 Aligned_cols=200 Identities=28% Similarity=0.411 Sum_probs=163.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|+++|++++|++ .++|+|+||+|++|+++||+||+|||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999963 46999999999999999999999999999999999999999999999 5432 59
Q ss_pred eEEeccC-cccc-ccHHHHhccCCCCC--C--HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH
Q 001371 463 GLVSQEP-VLFT-GSIKDNIAYGKDDA--T--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 463 a~V~Q~~-~Lf~-~TIreNI~~g~~~~--~--~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA 536 (1091)
+|++|++ .++. .|++||+.++.+.. + ..++.+.++..++.+ +..++.+ ..||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMTPV----KALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhChh----hhCCHHHHHHHHHHHH
Confidence 9999986 3555 49999998764322 1 233444444444321 1123334 4699999999999999
Q ss_pred hhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEe-CCEEee-ecChhHHh
Q 001371 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH-RGKIVE-KGTHSKLV 608 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~-~G~Ive-~Gt~~eL~ 608 (1091)
++.+|++|||||||++||..+...+.+.|++. +.|+|+|||+...+.. ||+|++|+ +|+|.+ .|+|++.+
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 99999999999999999999999999999875 4699999999998864 99999998 899987 56776653
No 356
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=5.3e-30 Score=321.66 Aligned_cols=322 Identities=12% Similarity=0.095 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHH
Q 001371 763 WALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALA 842 (1091)
Q Consensus 763 ~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~ 842 (1091)
+...++++.++..++.+++.++....+.+...+++.++|+++++.|++||+ .+++|++++|++.| ..+.+.+...+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~ 272 (710)
T TIGR03796 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLA 272 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHH
Confidence 344555566667788888999999999999999999999999999999999 67899999999998 678888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchH
Q 001371 843 RIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEE 922 (1091)
Q Consensus 843 ~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~ 922 (1091)
.++..++.+++.+++++.++|+++++.++++|+.++..++..+......+............+.|+++|++|||++++|+
T Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~ 352 (710)
T TIGR03796 273 TTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLES 352 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCH
Confidence 88888888888888889999999999998888888776666665555555555555667788999999999999999999
Q ss_pred HHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcc
Q 001371 923 KVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSF 1002 (1091)
Q Consensus 923 ~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1091)
++.+++.+......+...+..........+...+......+.+|+|+.++..|.++.+.++............+......
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~ 432 (710)
T TIGR03796 353 DFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGF 432 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877777666666666555555555555566667889999999999999988776555544444556666666
Q ss_pred cccHHHHHHHHHHHHHHHcCCCCCCCCC----CCCCcc-cccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEE
Q 001371 1003 SSDSNKAKSAAASIFAIIDRESKIDPSD----ESGTIL-EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKL 1077 (1091)
Q Consensus 1003 ~~~~~~~~~aa~~i~~~i~~~~~~~~~~----~~~~~~-~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valV 1077 (1091)
......+..+..++.++++.+++.+... .....+ ++.+|.|+|+||+|+|++. +.+||+|+||+|+|||++|||
T Consensus 433 ~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIv 511 (710)
T TIGR03796 433 GGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALV 511 (710)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEE
Confidence 7788888999999999887654432211 001111 3347899999999999853 336999999999999999999
Q ss_pred cCCCCCccccc
Q 001371 1078 NFQFHSLKQLT 1088 (1091)
Q Consensus 1078 G~SG~~~~~~~ 1088 (1091)
||||||||||.
T Consensus 512 G~sGsGKSTLl 522 (710)
T TIGR03796 512 GGSGSGKSTIA 522 (710)
T ss_pred CCCCCCHHHHH
Confidence 99999999974
No 357
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.9e-30 Score=314.89 Aligned_cols=366 Identities=15% Similarity=0.121 Sum_probs=253.8
Q ss_pred ChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 716 PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQR 795 (1091)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~ 795 (1091)
+.++.++++++++++.........+.+...++.....+... .....+...++++.++..++.+++.++....+.+...+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (588)
T PRK11174 19 PAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPR-EALLPPFILLILLFVLRALLAWLRERVGFKAGQHIRQQ 97 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666665555555666666665443111111 11223444555566677777888888899999999999
Q ss_pred HHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001371 796 IRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPL 875 (1091)
Q Consensus 796 Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl 875 (1091)
+|.++|+++++.|.+||+ .+++|++++|+++|++.+++.+...+..++..++..++.+++++.++|++++++++++|+
T Consensus 98 lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~ 175 (588)
T PRK11174 98 IRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPL 175 (588)
T ss_pred HHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 678999999999999999999999999999998888888888889999999999888888
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHH
Q 001371 876 IGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFF 955 (1091)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~ 955 (1091)
.++......+..+...+..+.........+.|.++|++|||+|++|+++.++|.+..+...+...+.....+...++...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (588)
T PRK11174 176 IPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEF 255 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766655555555555555556667788999999999999999999999999998877776655554443333333222
Q ss_pred HHHHHHHHHHHHhhHhhccCCcCHHHH------HHHHHHHHH---HHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCC
Q 001371 956 LLFAFYAASFYAGARLVEDGKATFSDV------FKVFFSLTM---TAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1091)
Q Consensus 956 ~~~~~~a~~~~~g~~li~~g~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~ 1026 (1091)
+......+..++++..+. |.++.+++ +..+..+.+ ....+............+..++.++.++++.+++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 334 (588)
T PRK11174 256 FASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAH 334 (588)
T ss_pred HHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 222222222223222222 44444332 111111111 12234445555667888888999999998765432
Q ss_pred CCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1027 ~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
+.... ...+.+..|.|+|+||+|.|+++ .+||+|+||+|+|||++|||||||||||||.
T Consensus 335 ~~~~~-~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~ 393 (588)
T PRK11174 335 PQQGE-KELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLL 393 (588)
T ss_pred cCCCc-cccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHH
Confidence 21111 11111235789999999988643 4699999999999999999999999999974
No 358
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.7e-33 Score=274.10 Aligned_cols=202 Identities=28% Similarity=0.478 Sum_probs=170.3
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCc--cc-cc
Q 001371 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LF-TG 474 (1091)
Q Consensus 398 ~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~--Lf-~~ 474 (1091)
++++|+++|++|+.|+++-|+|.+|||||||++.|.|...|++|+|.|||+|+..++.+.--..++-|+|||- .+ +-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 5689999999999999999999999999999999999999999999999999999999988888999999996 34 45
Q ss_pred cHHHHhccCCCC-----CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCC
Q 001371 475 SIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549 (1091)
Q Consensus 475 TIreNI~~g~~~-----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~ 549 (1091)
||.||+.+.... .+...- .-+...-.+-+..+|.|++-.++.+-.-|||||||-++|+-|.++.|+||+|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln--~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALN--ERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhh--HHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 999999875321 121111 1122233456788999999888888889999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchh-hhccCeEEEEeCCEEeee
Q 001371 550 TSALDAESEKVVQEALDRIM--VNRTTVIVAHRLST-VRNADMIAVIHRGKIVEK 601 (1091)
Q Consensus 550 tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~-i~~aD~Iivl~~G~Ive~ 601 (1091)
|+||||.+...+.+.=.+.- .+-|+++|||.+.- +..-+|.++|++|+|+-.
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 99999998887766544432 34599999999975 778999999999999964
No 359
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.7e-32 Score=331.18 Aligned_cols=192 Identities=27% Similarity=0.360 Sum_probs=163.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-++++|++++|++ ..|+++||+|++||+++|+||+|||||||+++|.|+.+|++|+|.++ + ++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eE
Confidence 4899999999953 25999999999999999999999999999999999999999999986 1 69
Q ss_pred eEEeccCcc-ccccHHHHhccCCCCCC-HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 463 GLVSQEPVL-FTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 463 a~V~Q~~~L-f~~TIreNI~~g~~~~~-~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
+|+||++.+ ++.|++||+.++..... +....++++..++.+...+ .-.+||||||||++|||||.++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----------~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDK-----------NVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhC-----------CcccCCHHHHHHHHHHHHHhcC
Confidence 999999875 56799999987633222 3345667777776654332 2346999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeecC
Q 001371 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt 603 (1091)
|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++ ++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999999999999999999998743 7899999999998764 999999965 8877777
No 360
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.2e-29 Score=317.09 Aligned_cols=320 Identities=16% Similarity=0.197 Sum_probs=255.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHH
Q 001371 763 WALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALA 842 (1091)
Q Consensus 763 ~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~ 842 (1091)
+...++++.++..++.+++.++....+.+...++|.++|+++++.|++||+ .+++|.+++|+ +|++.+.+.+...+.
T Consensus 181 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~ 257 (694)
T TIGR01846 181 LALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSAL 257 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 445556666677888889999999999999999999999999999999999 67899999999 699999998887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchH
Q 001371 843 RIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEE 922 (1091)
Q Consensus 843 ~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~ 922 (1091)
.++..++.+++.++++++++|++++++++++|+.++..++..+..+...+............+.|+++|++|||+||.|+
T Consensus 258 ~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~ 337 (694)
T TIGR01846 258 TVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEP 337 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCH
Confidence 77766666666677788899999999888888887776666655555445555556667788999999999999999999
Q ss_pred HHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcc
Q 001371 923 KVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSF 1002 (1091)
Q Consensus 923 ~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1091)
++.+++.+..+...+...+.....+....+...+.....++.+|+|+.++..|.++.++++............+......
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~ 417 (694)
T TIGR01846 338 QFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQL 417 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777777766666555565666666777889999999999999988776555444445556666666
Q ss_pred cccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCC
Q 001371 1003 SSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFH 1082 (1091)
Q Consensus 1003 ~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~ 1082 (1091)
......+..+..++.++++.+++.+.. . ....+...|.|+|+||+|+|++. +.++|+|+||+|+|||++||||+|||
T Consensus 418 ~~~~~~~~~~~~ri~~~l~~~~e~~~~-~-~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGs 494 (694)
T TIGR01846 418 WQDFQQTGIALERLGDILNSPTEPRSA-G-LAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGS 494 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccCC-C-CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCC
Confidence 778888999999999998765543221 1 11122346899999999999754 23599999999999999999999999
Q ss_pred Cccccc
Q 001371 1083 SLKQLT 1088 (1091)
Q Consensus 1083 ~~~~~~ 1088 (1091)
|||||-
T Consensus 495 GKSTL~ 500 (694)
T TIGR01846 495 GKSTLT 500 (694)
T ss_pred CHHHHH
Confidence 999974
No 361
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.4e-29 Score=316.74 Aligned_cols=319 Identities=20% Similarity=0.264 Sum_probs=256.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHH
Q 001371 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALAR 843 (1091)
Q Consensus 764 ~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~ 843 (1091)
...++++.++..++.+++.++..+.+.+...+++.++|+++++.|++| + .+++|.+++|+ +|++.+.+.+...+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~ 265 (694)
T TIGR03375 190 AIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLT 265 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHH
Confidence 334444556677788889999999999999999999999999999998 5 46799999999 7999999998888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHH
Q 001371 844 IVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEK 923 (1091)
Q Consensus 844 ~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~ 923 (1091)
.+..++.+++.+++.+.++|+++++.++++|+.++..++..+..+...+............+.|+++|++|||+|+.|++
T Consensus 266 ~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 345 (694)
T TIGR03375 266 ALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGR 345 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHH
Confidence 77777777777777888999999999988888888777766666666666666667778889999999999999999999
Q ss_pred HHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhccc
Q 001371 924 VMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFS 1003 (1091)
Q Consensus 924 f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1091)
+.+++.+..+...+...+.....+....+...+......+.+|+|+.++..|.++.+.++............+.......
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~ 425 (694)
T TIGR03375 346 FQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLL 425 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877777777776666666666555666777899999999999999887776655555555566666667
Q ss_pred ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCC
Q 001371 1004 SDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHS 1083 (1091)
Q Consensus 1004 ~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~ 1083 (1091)
.....+..+..++.++++.+++.+.... ....++.+|.|+|+||+|+|++. +.+||+|+||+|+|||++|||||||||
T Consensus 426 ~~~~~~~~~~~ri~~il~~~~e~~~~~~-~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsG 503 (694)
T TIGR03375 426 TRYQQAKTALQSLDELMQLPVERPEGTR-FLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSG 503 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCC-CCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCC
Confidence 7888889999999999887654322111 11122347899999999999743 336999999999999999999999999
Q ss_pred ccccc
Q 001371 1084 LKQLT 1088 (1091)
Q Consensus 1084 ~~~~~ 1088 (1091)
||||-
T Consensus 504 KSTLl 508 (694)
T TIGR03375 504 KSTLL 508 (694)
T ss_pred HHHHH
Confidence 99974
No 362
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2e-29 Score=309.64 Aligned_cols=363 Identities=19% Similarity=0.301 Sum_probs=288.9
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 718 IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIR 797 (1091)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh 797 (1091)
++.+++++++.++.++..+...+++...++....... ......+...++++.++..++.+++.+.....+.+....+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr 90 (571)
T TIGR02203 13 KAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIR 90 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666655556666665554332111 11222334567777777888888899999999999999999
Q ss_pred HHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001371 798 SMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIG 877 (1091)
Q Consensus 798 ~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~ 877 (1091)
..+++++++.|.++|+ ..+.|++++|+++|++.++..+...+..++..++.+++.+++.+..+|+++++++++.|+.+
T Consensus 91 ~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~ 168 (571)
T TIGR02203 91 VRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLS 168 (571)
T ss_pred HHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999 57799999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHH
Q 001371 878 VSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLL 957 (1091)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~ 957 (1091)
+..++..+..+...+..+....+....+.|+++|+.|||+++.++++.++|.+..+...+...+.....+...++...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (571)
T TIGR02203 169 ILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIA 248 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777776666666666666667778899999999999999999999999999998888888887777777666666666
Q ss_pred HHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccc
Q 001371 958 FAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILE 1037 (1091)
Q Consensus 958 ~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~ 1037 (1091)
.....+.+++|+.++..|.++.+.++............+............+..+..++.++++.+++.+.... ..+
T Consensus 249 ~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~---~~~ 325 (571)
T TIGR02203 249 SLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR---AIE 325 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---CCC
Confidence 66777788899988999999998887777666666666666667777888889999999888875443221111 112
Q ss_pred ccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1038 ~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
+..|.|+|+||+|+|+++ +.++|+|+||+|++||++||||+||||||||-
T Consensus 326 ~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl 375 (571)
T TIGR02203 326 RARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLV 375 (571)
T ss_pred CCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 246889999999999754 34699999999999999999999999999973
No 363
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=6.6e-32 Score=331.19 Aligned_cols=208 Identities=22% Similarity=0.353 Sum_probs=158.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ +++|+|+||+|++|+++|||||+|||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 689999999963 469999999999999999999999999999999999999999999999842 488
Q ss_pred EEeccCccccccHHHHhccCCCCC---C-----------HHHHHHHH---H-------HcccHHHHhhCCCCcc-ccccc
Q 001371 464 LVSQEPVLFTGSIKDNIAYGKDDA---T-----------TEEIRVAT---E-------LANAAKFIDKLPQGID-TLVGE 518 (1091)
Q Consensus 464 ~V~Q~~~Lf~~TIreNI~~g~~~~---~-----------~~~i~~a~---~-------~a~l~~~i~~lp~G~~-T~vge 518 (1091)
|++|++..+..|+.+++.-+.... + ..++.... . ...+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 888876555556655543110000 0 00000000 0 00112233333 232 12233
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCE
Q 001371 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1091)
Q Consensus 519 ~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~ 597 (1091)
.-.+||||||||++|||||+.+|+||||||||++||+.+...+.+.|++. +.|+|+|||+...+.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 44579999999999999999999999999999999999999999988875 5799999999999865 99999999999
Q ss_pred Eee-ecChhHHhc
Q 001371 598 IVE-KGTHSKLVE 609 (1091)
Q Consensus 598 Ive-~Gt~~eL~~ 609 (1091)
+.. .|+|++...
T Consensus 224 i~~~~g~~~~~~~ 236 (638)
T PRK10636 224 LFEYTGNYSSFEV 236 (638)
T ss_pred EEEecCCHHHHHH
Confidence 974 788887764
No 364
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.98 E-value=3.6e-32 Score=261.25 Aligned_cols=202 Identities=25% Similarity=0.444 Sum_probs=167.1
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCc-ccc----
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV-LFT---- 473 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~-Lf~---- 473 (1091)
..+.+.|||++++|+++||+|.+|||||||.+.|.|..+|++|+|++||+++.-=+-..-.++|-.++|||. -||
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~ 105 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLR 105 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhh
Confidence 457899999999999999999999999999999999999999999999999987777777789999999984 233
Q ss_pred -ccHH-----HHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEee
Q 001371 474 -GSIK-----DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547 (1091)
Q Consensus 474 -~TIr-----eNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLD 547 (1091)
|+|. -|-.+ .|....+++.+-++.+||.++=. +- .-..||-|||||+||||||+-+|+|+|-|
T Consensus 106 iGqiLd~PL~l~T~~-~~~~R~~~i~~TL~~VGL~Pdha------n~----~~~~la~~QKQRVaLARALIL~P~iIIaD 174 (267)
T COG4167 106 IGQILDFPLRLNTDL-EPEQRRKQIFETLRMVGLLPDHA------NY----YPHMLAPGQKQRVALARALILRPKIIIAD 174 (267)
T ss_pred hhhHhcchhhhcccC-ChHHHHHHHHHHHHHhccCcccc------cc----chhhcCchhHHHHHHHHHHhcCCcEEEeh
Confidence 2222 22111 13345567888888887754322 22 23579999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHH--cCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcCC
Q 001371 548 EATSALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1091)
Q Consensus 548 E~tSaLD~~te~~i~~~l~~~--~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~ 611 (1091)
||..+||......+.+...++ ..|-.-|.|+..+-.+++ +|+|+||++|+++|.|...|++..+
T Consensus 175 eAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P 241 (267)
T COG4167 175 EALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241 (267)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence 999999999888777765443 347789999999999998 9999999999999999999998764
No 365
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.98 E-value=4.5e-29 Score=306.76 Aligned_cols=362 Identities=22% Similarity=0.324 Sum_probs=265.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 723 AGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFE 802 (1091)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~ 802 (1091)
+.+++.++.........+.+...++........ .....+..+++++.++..++.+++.+.....+.+....+|..+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 99 (576)
T TIGR02204 22 AALVALLITAAATLSLPYAVRLMIDHGFSKDSS--GLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFA 99 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444344444555555542321111 112233444555555666677788888889999999999999999
Q ss_pred HHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001371 803 KVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT 882 (1091)
Q Consensus 803 ~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~ 882 (1091)
++++.|.+||+ ..+.|++++|+++|++.+++.....+..++..++.+++.+++.+.++|++++++++.+|+.++..++
T Consensus 100 ~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~ 177 (576)
T TIGR02204 100 HLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILL 177 (576)
T ss_pred HHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 4668999999999999999999888888888888888888888889999999888888887776666
Q ss_pred HHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 883 QMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYA 962 (1091)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a 962 (1091)
..+..+...+............+.|.++|++|||+|+.|+++.+.+.+..+.......+..........+...+.+....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (576)
T TIGR02204 178 FGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIV 257 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555555555556667889999999999999999999999999988776665555554444433444344444455
Q ss_pred HHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccccee
Q 001371 963 ASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE 1042 (1091)
Q Consensus 963 ~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~ 1042 (1091)
+.+++|..++..|.++.+.++............+............+..+..++.+.++.+++.+........+++..+.
T Consensus 258 ~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~ 337 (576)
T TIGR02204 258 GVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGE 337 (576)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCce
Confidence 66778888888999988877666555555555566666667788888999999998887654322211111111223578
Q ss_pred EEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1043 I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
|+|+||+|+||++.+.++|+|+||+|+|||.+|||||||||||+|-
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLl 383 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLF 383 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHH
Confidence 9999999999865445699999999999999999999999999873
No 366
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.6e-31 Score=272.87 Aligned_cols=208 Identities=29% Similarity=0.451 Sum_probs=173.0
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCCh-HHHhh
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRK 460 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~-~~lr~ 460 (1091)
.-|+|+||+++|. ++++|+|||++|++||.-+|+||+|||||||++++.|.+.|.+|.+.+-|+..-.-+. .++|+
T Consensus 30 ~li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 3499999999996 4589999999999999999999999999999999999999999999999999988887 99999
Q ss_pred ceeEEeccC---ccccccHHHHhccC------CC--CCCHHHHHHH---HHHcccHHHHhhCCCCcccccccCCCCCChH
Q 001371 461 KIGLVSQEP---VLFTGSIKDNIAYG------KD--DATTEEIRVA---TELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1091)
Q Consensus 461 ~ia~V~Q~~---~Lf~~TIreNI~~g------~~--~~~~~~i~~a---~~~a~l~~~i~~lp~G~~T~vge~G~~LSGG 526 (1091)
+||+|+-+- +.=+.++||=++=| .. +.++++..+| ++.+++ ....+..=..||-|
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~-----------~~la~r~~~~LS~G 175 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGA-----------KHLADRPFGSLSQG 175 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcch-----------hhhccCchhhcCHh
Confidence 999998542 22355777777533 11 4566655444 333333 33333444679999
Q ss_pred HHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC---CCeEEEEccCchhhh-ccCeEEEEeCCEEeeec
Q 001371 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 527 QkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~---~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~G 602 (1091)
||||+-|||||+++|++||||||+++||....+.+.+.|.++.. ..|+|+|||+.+.+. ..++++.+++|+++.+|
T Consensus 176 e~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 99999999999999999999999999999999988888888753 568999999998875 57999999999999887
Q ss_pred C
Q 001371 603 T 603 (1091)
Q Consensus 603 t 603 (1091)
.
T Consensus 256 ~ 256 (257)
T COG1119 256 K 256 (257)
T ss_pred c
Confidence 4
No 367
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=4.8e-32 Score=252.26 Aligned_cols=198 Identities=28% Similarity=0.430 Sum_probs=167.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CcEEEECCccccCCChHHHh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWIR 459 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~---~G~I~idg~~i~~~~~~~lr 459 (1091)
-+.++||+.+-|+ .-.|-|+||+|.+||++-+.||||||||||+.-+.|++.++ +|++.+|++++..++.+ |
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 3678999988864 46899999999999999999999999999999999999884 79999999999988865 6
Q ss_pred hceeEEeccCcccc-ccHHHHhccCCCC-----CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~-~TIreNI~~g~~~-----~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
+++|+.+||+|||. -+|-+||.|.-|. +.......|++..+++.+..+.| .+||||||.|+||
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHH
Confidence 79999999999997 5999999998652 33445667888888888888877 4799999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHH--cCCCeEEEEccCchhhhccCeEEEEeCCEEeeecCh
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~--~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~ 604 (1091)
-|+|+..|+.++||||+|.||..-...+.+-+-.. ..+--+|.|||.+.-++. +|+|+|.+-.
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvpa--------gsrVie~~~~ 210 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPA--------GSRVIEMAQW 210 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCC--------CCeeeeeehh
Confidence 99999999999999999999998777776655332 247789999999987763 4555555443
No 368
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.98 E-value=4.9e-29 Score=306.81 Aligned_cols=359 Identities=16% Similarity=0.190 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 720 VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSM 799 (1091)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~ 799 (1091)
.+++.+++.++.........+++..+++...............+..+++++.++..++.+++.+.+...+.+...++|.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 103 (592)
T PRK10790 24 PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTD 103 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555666654432111000001112233444555666677778888888999999999999
Q ss_pred HHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001371 800 CFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVS 879 (1091)
Q Consensus 800 ~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~ 879 (1091)
+|+++++.|.+||+ .++.|+++||+++|++.+++.+...+..++..+..+++.+++.+..+|+++++.++++|+.++.
T Consensus 104 l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~ 181 (592)
T PRK10790 104 VMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVV 181 (592)
T ss_pred HHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 6789999999999999999999999999999988888888888889999998888888887766
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHH-
Q 001371 880 GYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLF- 958 (1091)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~- 958 (1091)
..+..+..+...+..+.........+.|+++|+.|||+|+.|+++.+++.+..+...+...+.....+........++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (592)
T PRK10790 182 MVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSA 261 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555544444555566778999999999999999999999999988776666555544433322111111111
Q ss_pred -HHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccc
Q 001371 959 -AFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILE 1037 (1091)
Q Consensus 959 -~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~ 1037 (1091)
...++..++|. ...|.++.+.++............+............+..++.++.++++.+++.+. .. ..+
T Consensus 262 ~~~~~~~~~~~~--~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~-~~---~~~ 335 (592)
T PRK10790 262 LILCGLLMLFGF--SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG-ND---DRP 335 (592)
T ss_pred HHHHHHHHHHHH--HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC-CC---ccC
Confidence 11222233443 457888887666554444444445556666677888889999999998875433111 11 112
Q ss_pred ccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1038 ~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
...|+|+|+||+|+||++ .++|+|+||+|+|||++||||+||||||||-
T Consensus 336 ~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl 384 (592)
T PRK10790 336 LQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLA 384 (592)
T ss_pred CCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 246899999999999743 3599999999999999999999999999974
No 369
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.98 E-value=7e-29 Score=303.29 Aligned_cols=361 Identities=15% Similarity=0.152 Sum_probs=253.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 718 IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIR 797 (1091)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh 797 (1091)
+..++++++++++.........+.++..++.....+. ...+...+++++++..+..++........+.+...++|
T Consensus 18 k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 92 (585)
T TIGR01192 18 KNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-----VLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLL 92 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555666666655432111 11122222233333333333334444445555555666
Q ss_pred HHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001371 798 SMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIG 877 (1091)
Q Consensus 798 ~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~ 877 (1091)
.++|+++++.|++||+ .+++|.+++|+++|++.+.......+..++..++.+++.+++++.++|++++++++++|+.+
T Consensus 93 ~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~ 170 (585)
T TIGR01192 93 TEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYI 170 (585)
T ss_pred HHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999 57799999999999999998888888888888887777777788899999999988888877
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHH
Q 001371 878 VSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLL 957 (1091)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~ 957 (1091)
+......+..+..++............+.|+++|++||++|+.|+++.+++.+..+...+...+.....+....+...+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (585)
T TIGR01192 171 LIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMAS 250 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666555555555544555566678899999999999999999999999999877776666665555555444444444
Q ss_pred HHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccc
Q 001371 958 FAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILE 1037 (1091)
Q Consensus 958 ~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~ 1037 (1091)
.....+.+++|..++..|.++.+.++............+............+..+..++.++.+.+++.+.... +...+
T Consensus 251 ~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~-~~~~~ 329 (585)
T TIGR01192 251 TISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD-APELP 329 (585)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc-CCCCC
Confidence 55556678889999999999988777655544444444555555566777778888888888765433221111 11112
Q ss_pred ccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1038 ~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
+.+|.|+|+||+|+|+++ .++|+|+||+|++||++|||||||||||||-
T Consensus 330 ~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~ 378 (585)
T TIGR01192 330 NVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLI 378 (585)
T ss_pred CCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 246789999999999743 2599999999999999999999999999873
No 370
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.98 E-value=3.7e-29 Score=305.30 Aligned_cols=321 Identities=16% Similarity=0.248 Sum_probs=247.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhH
Q 001371 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841 (1091)
Q Consensus 762 ~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l 841 (1091)
.|..+++++.++..++.+++.++....+.+...++|.++|+++++.|++||+ .+++|++++|+++|++.+.......+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~i~srl~~Dv~~i~~~~~~~~ 114 (569)
T PRK10789 37 MWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL--RHRTGDLMARATNDVDRVVFAAGEGV 114 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455555555566666777777778889999999999999999999999999 67899999999999999998887788
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccc
Q 001371 842 ARIVQNISTAAAGLIIA-FTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCA 920 (1091)
Q Consensus 842 ~~~~~~~~~~~~~~i~~-~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~ 920 (1091)
..++..++..++.++++ +.++|++++++++++|+.++..+...+......+..+.........+.|++.|++|||+|+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~ 194 (569)
T PRK10789 115 LTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGL 194 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcc
Confidence 88887766666565554 47899999988888888877666655555444444444555667789999999999999999
Q ss_pred hHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHh
Q 001371 921 EEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSS 1000 (1091)
Q Consensus 921 e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1091)
|+++.++|.+..+...+...+.....+....+...+......+.+++|..++..|.++.++++............+....
T Consensus 195 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~ 274 (569)
T PRK10789 195 EDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALA 274 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887777777766666555454554444555667788999898999998887766655554445555555
Q ss_pred cccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCC
Q 001371 1001 SFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQ 1080 (1091)
Q Consensus 1001 ~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~S 1080 (1091)
........+..++.++.++++.+++.+... ...++.+|.|+|+||+|+|+.. +.++|+|+||+|+|||++||||||
T Consensus 275 ~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~s 350 (569)
T PRK10789 275 WMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPT 350 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCC
Confidence 666788888899999999887644322111 1122346899999999999753 336999999999999999999999
Q ss_pred CCCccccc
Q 001371 1081 FHSLKQLT 1088 (1091)
Q Consensus 1081 G~~~~~~~ 1088 (1091)
|||||||-
T Consensus 351 GsGKSTLl 358 (569)
T PRK10789 351 GSGKSTLL 358 (569)
T ss_pred CCCHHHHH
Confidence 99999974
No 371
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1.5e-31 Score=286.74 Aligned_cols=225 Identities=31% Similarity=0.521 Sum_probs=186.2
Q ss_pred EEEEeEEEECCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCcEEEECCccccCCChHH
Q 001371 384 IELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQW 457 (1091)
Q Consensus 384 I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-----~~G~I~idg~~i~~~~~~~ 457 (1091)
++++|++.+|... ....++++|||+|++||++|+||+||||||--...++|+++- -+|+|.++|.|+-..+.+.
T Consensus 7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~ 86 (534)
T COG4172 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86 (534)
T ss_pred eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence 6788887777422 246799999999999999999999999999999999999865 4789999999999999888
Q ss_pred Hhh----ceeEEeccCcc-cc--ccH----HHHhccCC---CCCCHHHHHHHHHHcccHH---HHhhCCCCcccccccCC
Q 001371 458 IRK----KIGLVSQEPVL-FT--GSI----KDNIAYGK---DDATTEEIRVATELANAAK---FIDKLPQGIDTLVGEHG 520 (1091)
Q Consensus 458 lr~----~ia~V~Q~~~L-f~--~TI----reNI~~g~---~~~~~~~i~~a~~~a~l~~---~i~~lp~G~~T~vge~G 520 (1091)
+|+ +|++++|||.- .| -|| .|-|.+-. ..+-.+++.+.++.+++.+ .++..|
T Consensus 87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP----------- 155 (534)
T COG4172 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP----------- 155 (534)
T ss_pred HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC-----------
Confidence 885 79999999962 22 144 34443322 1233566777778877744 333344
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeCCE
Q 001371 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~ 597 (1091)
..||||||||+-||-||..+|++||-||||.|||......|.+.|+++. .|..+++|||.|+.++. ||+|.||.+|+
T Consensus 156 HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 156 HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235 (534)
T ss_pred cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccE
Confidence 5799999999999999999999999999999999999999999888754 47899999999999976 99999999999
Q ss_pred EeeecChhHHhcCCCchhHHHH
Q 001371 598 IVEKGTHSKLVEDPEGAYSQLI 619 (1091)
Q Consensus 598 Ive~Gt~~eL~~~~~~~y~~l~ 619 (1091)
|+|+|+-++|.+.+...|.+..
T Consensus 236 ivE~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 236 IVETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred EeecCcHHHHhhCCCChHHHHH
Confidence 9999999999998777787654
No 372
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=2.3e-31 Score=327.38 Aligned_cols=207 Identities=24% Similarity=0.446 Sum_probs=157.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
|+++|++++|++ .++|+|+||+|++|+++|||||+|||||||+++|.|+++|++|+|.++|.. .++
T Consensus 4 l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 789999999963 469999999999999999999999999999999999999999999998731 367
Q ss_pred EEeccCcc-ccccHHHHhccCCCC------------------CCHHHHHHHH------H-------HcccHHHHhhCCCC
Q 001371 464 LVSQEPVL-FTGSIKDNIAYGKDD------------------ATTEEIRVAT------E-------LANAAKFIDKLPQG 511 (1091)
Q Consensus 464 ~V~Q~~~L-f~~TIreNI~~g~~~------------------~~~~~i~~a~------~-------~a~l~~~i~~lp~G 511 (1091)
|++|++.. ..+++.+++..+... ..++.+.... . ...+.+.+..+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 88887632 235666665322100 0000000000 0 00112233333 2
Q ss_pred cccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeE
Q 001371 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMI 590 (1091)
Q Consensus 512 ~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~I 590 (1091)
+. ....-..||||||||++|||||+.+|+||||||||++||+.+...+.+.|.++ +.|+|+|||+...+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 21 12334579999999999999999999999999999999999999999999886 3699999999999875 9999
Q ss_pred EEEeCCEEee-ecChhHHhcC
Q 001371 591 AVIHRGKIVE-KGTHSKLVED 610 (1091)
Q Consensus 591 ivl~~G~Ive-~Gt~~eL~~~ 610 (1091)
++|++|+++. .|+|++.+..
T Consensus 224 ~~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred EEEECCEEEEecCCHHHHHHH
Confidence 9999999985 6999887653
No 373
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.97 E-value=1.4e-28 Score=302.53 Aligned_cols=316 Identities=22% Similarity=0.323 Sum_probs=250.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHH
Q 001371 767 YLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQ 846 (1091)
Q Consensus 767 y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~ 846 (1091)
+++++++..++.+++.++..+.+.+....+|..+++++++.|.++|+ ....|.+++|+++|++.+...+...+..++.
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~ 148 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVR 148 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777888888899999999999999999999999999 5678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHH
Q 001371 847 NISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQ 926 (1091)
Q Consensus 847 ~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~ 926 (1091)
.++.+++.+++.+..+|++++++++++|+.++..+...+..+...+..+.........+.|.++|+.+||+|+.|+++.+
T Consensus 149 ~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~ 228 (582)
T PRK11176 149 EGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETK 228 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHH
Confidence 99999999998899999999988888888777766666665555555555666677889999999999999999999999
Q ss_pred HHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccH
Q 001371 927 LYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDS 1006 (1091)
Q Consensus 927 ~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1091)
+|.+..+...+...|........-.+...+......+..++|..++..|.++.+.+..+..........+..........
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~ 308 (582)
T PRK11176 229 RFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQF 308 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887777766665554444555454555666788888888899998877655544444444555555666677
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccc
Q 001371 1007 NKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQ 1086 (1091)
Q Consensus 1007 ~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~ 1086 (1091)
..+..+..++.++++.+++.+... ...++..|.|+|+||+|+||++ +.++|+|+||+|++||++||||||||||||
T Consensus 309 ~~~~~~~~ri~~~~~~~~~~~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKST 384 (582)
T PRK11176 309 QRGMAACQTLFAILDLEQEKDEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKST 384 (582)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHH
Confidence 788888888888877543322111 1122346789999999999754 336999999999999999999999999999
Q ss_pred cc
Q 001371 1087 LT 1088 (1091)
Q Consensus 1087 ~~ 1088 (1091)
|-
T Consensus 385 Ll 386 (582)
T PRK11176 385 IA 386 (582)
T ss_pred HH
Confidence 74
No 374
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.97 E-value=1e-28 Score=300.22 Aligned_cols=316 Identities=12% Similarity=0.072 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHH
Q 001371 767 YLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQ 846 (1091)
Q Consensus 767 y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~ 846 (1091)
++++.++..++.++..++....+.+...++|.++|+++++.|++||+ .+++|++++|+++|++.++..+. .+..++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~ 135 (555)
T TIGR01194 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLF-IFPPIAI 135 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHH-HHHHHHH
Confidence 44455566677788888889999999999999999999999999999 57899999999999999999885 4777788
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchH--HH
Q 001371 847 NISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEE--KV 924 (1091)
Q Consensus 847 ~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~--~f 924 (1091)
.++.+++.+++.+..+|.+++++++++|+.++..++..+..+...+..+.........+.|.+.|+++||+|+.++ ..
T Consensus 136 ~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~ 215 (555)
T TIGR01194 136 ALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFA 215 (555)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHH
Confidence 8888888888888999999999888888877765555444444444444555566778999999999999999953 55
Q ss_pred HHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccc
Q 001371 925 MQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSS 1004 (1091)
Q Consensus 925 ~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1091)
.++|.+..+...+...+.........++...+.....++.+|+|... |.++.+.++...+........+....+...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~ 292 (555)
T TIGR01194 216 HGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALP 292 (555)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777666665555444443333433443444444445555432 566777666655555555556677777788
Q ss_pred cHHHHHHHHHHHHHHHcCCCC--CCC--CCCCCC---cccccceeEEEeeeeeeCCCCC--CCccccccceeeeCCCEEE
Q 001371 1005 DSNKAKSAAASIFAIIDRESK--IDP--SDESGT---ILEDVKGEIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKVSA 1075 (1091)
Q Consensus 1005 ~~~~~~~aa~~i~~~i~~~~~--~~~--~~~~~~---~~~~~~G~I~f~nVs~~Y~~rp--~~~VLk~is~~I~~Ge~va 1075 (1091)
....+..++.++.++++...+ ... ++.... .++...|.|+|+||+|+|++.+ ..++|+|+||+|++||++|
T Consensus 293 ~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~a 372 (555)
T TIGR01194 293 ILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVF 372 (555)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEE
Confidence 899999999999998753111 110 100000 1112357899999999997532 2359999999999999999
Q ss_pred EEcCCCCCccccc
Q 001371 1076 KLNFQFHSLKQLT 1088 (1091)
Q Consensus 1076 lVG~SG~~~~~~~ 1088 (1091)
||||||||||||-
T Consensus 373 ivG~sGsGKSTl~ 385 (555)
T TIGR01194 373 IVGENGCGKSTLA 385 (555)
T ss_pred EECCCCCCHHHHH
Confidence 9999999999974
No 375
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.97 E-value=1.8e-28 Score=299.91 Aligned_cols=320 Identities=25% Similarity=0.356 Sum_probs=257.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhH
Q 001371 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841 (1091)
Q Consensus 762 ~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l 841 (1091)
.+...++++.++..++.++..+...+.+.+...++|.++++++++.|++||| .+++|.+++|+++|++.++..+....
T Consensus 53 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~ 130 (567)
T COG1132 53 ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVL 130 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhH
Confidence 3455566666677777778888888888999999999999999999999999 68899999999999999999998886
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccch
Q 001371 842 ARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE 921 (1091)
Q Consensus 842 ~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e 921 (1091)
..+...++.+++.+++.+..+|+++++++...|++.+......+..+...+..+.........+.|++.|+++|++|+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~ 210 (567)
T COG1132 131 VLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAE 210 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhh
Confidence 65665778888888888999999999998888888887777665445555666666667778899999999999999999
Q ss_pred HHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhc
Q 001371 922 EKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSS 1001 (1091)
Q Consensus 922 ~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1091)
+...+++.+..+...+...+.....+....+...+.....+...|+|..++..+.++.+++.............+.....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 290 (567)
T COG1132 211 DRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGE 290 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888887777777666666666666666667777777888899988888888887765555544444445566666
Q ss_pred ccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCC
Q 001371 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQF 1081 (1091)
Q Consensus 1002 ~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG 1081 (1091)
.......+..++.+++++++.++........ .+...|+|+|+||+|+|++ +.+||||+||+|+|||++|||||||
T Consensus 291 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sG 365 (567)
T COG1132 291 VVSLLQRASAAAERLFELLDEEPEVEDPPDP---LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSG 365 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCCC---CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCC
Confidence 6677888899999999999876543332221 2334789999999999974 3469999999999999999999999
Q ss_pred CCccccc
Q 001371 1082 HSLKQLT 1088 (1091)
Q Consensus 1082 ~~~~~~~ 1088 (1091)
|||||+.
T Consensus 366 sGKSTl~ 372 (567)
T COG1132 366 SGKSTLI 372 (567)
T ss_pred CCHHHHH
Confidence 9999974
No 376
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.7e-31 Score=322.49 Aligned_cols=193 Identities=23% Similarity=0.365 Sum_probs=159.2
Q ss_pred EeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEE-----------ECCccccCCCh
Q 001371 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGINLKEFQL 455 (1091)
Q Consensus 387 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~-----------idg~~i~~~~~ 455 (1091)
++++++|.. +..+|++++ .+++|++++|+||+|||||||+++|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 348999963 346999999 9999999999999999999999999999999999998 99999876542
Q ss_pred HH--Hhhc----eeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 456 QW--IRKK----IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 456 ~~--lr~~----ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
+- .+.+ +.|++|.|.+|.+|++||+.+. ...+++.++++..++.+.. ++.+ .+|||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~~~~~~~~~l~~l~l~~~~-------~~~~----~~LSgGe~q 219 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---DERGKLDEVVERLGLENIL-------DRDI----SELSGGELQ 219 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh---hHHHHHHHHHHHcCCchhh-------cCCh----hhCCHHHHH
Confidence 21 1123 4556667888899999999742 1234566777776664432 3333 469999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCC
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G 596 (1091)
|++||||++++|++||||||||+||+.+...+.+.|+++.+++|+|+|+|+++.+.. ||+|++|++|
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999987668999999999999865 9999999864
No 377
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.97 E-value=1.1e-27 Score=263.90 Aligned_cols=446 Identities=15% Similarity=0.181 Sum_probs=286.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEV---VGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1091)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l---~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 201 (1091)
++-.+++..+..++-...++..+... .||.-.+--|.+ =+.+++|+..+.+...+....+.-+++-++..-+.+.-
T Consensus 179 yle~klaLafrtrL~~h~y~~Y~snq-TyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~ 257 (728)
T KOG0064|consen 179 YLESKLALAFRTRLTRHAYDMYLSNQ-TFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLD 257 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-ceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 33334444555555555555555444 555332122333 35699999999999988888888887666554433332
Q ss_pred HhHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHH
Q 001371 202 KGWLL-T---LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAY 277 (1091)
Q Consensus 202 ~~~~l-~---l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 277 (1091)
..-.. + .++.+.+-+-..+.+.++.+..++..+.....+.....=+..+.|-..|-.|+..+.+.++.++..+.+.
T Consensus 258 s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~ 337 (728)
T KOG0064|consen 258 SATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLV 337 (728)
T ss_pred hhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 22111 1 1111122222333444555555666665555566666777889999999999999999988887766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhcCC-------C-HHHHHHHHHHHHHHHHHH
Q 001371 278 KSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLI------------LEEGY-------N-GGQVVNVMVAVLTGSMSL 337 (1091)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~------------~~~~~-------t-~g~l~~~~~~~~~~~~~l 337 (1091)
...........++..+-+++ .=+.|-|.-++ ..+.. + .-.+...=..+......+
T Consensus 338 ~qm~li~k~r~~YiMleqF~-----mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAi 412 (728)
T KOG0064|consen 338 EQMNLIFKVRLWYIMLEQFV-----MKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAI 412 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 44333222222222222221 12233332221 11110 0 001111111222334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---cC----------CCCCcCC-----CCCcccC-----CCCCcEEEEeEEEECC
Q 001371 338 GEASPCLSAFGAGQAAAFKMFETIN---RK----------PEIDAYD-----TKGKILD-----DIRGDIELRDVYFSYP 394 (1091)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~r~~~~~~---~~----------~~~~~~~-----~~~~~~~-----~~~~~I~~~~vsf~Y~ 394 (1091)
..++...-.+.+-...-.|+.+.+. +. ++..+.. .++.+.+ .....|.++||-.--|
T Consensus 413 eRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP 492 (728)
T KOG0064|consen 413 ERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITP 492 (728)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceecc
Confidence 5555555555555555556554432 11 1110000 0000000 0123588999988777
Q ss_pred CCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccc
Q 001371 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474 (1091)
Q Consensus 395 ~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~ 474 (1091)
+. ..+..++||+|++|-.+.|.||+|||||+|.+.|.|+++...|...+-- +.+|-|+||.|+.=-|
T Consensus 493 ~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~g 559 (728)
T KOG0064|consen 493 AG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGG 559 (728)
T ss_pred Cc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcC
Confidence 53 3578999999999999999999999999999999999999999887653 3469999999998889
Q ss_pred cHHHHhccCC-------CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEee
Q 001371 475 SIKDNIAYGK-------DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547 (1091)
Q Consensus 475 TIreNI~~g~-------~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLD 547 (1091)
|+||-|-|.. .+++|.+++..++.+.|+.. .+-..|.|.. -+--.-||||+|||+++||.+|++|+.-+||
T Consensus 560 tlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i-~qr~~g~da~-~dWkd~LsgGekQR~~mARm~yHrPkyalLD 637 (728)
T KOG0064|consen 560 TLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHI-LQREGGWDAV-RDWKDVLSGGEKQRMGMARMFYHRPKYALLD 637 (728)
T ss_pred cccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHH-HHhccChhhh-ccHHhhccchHHHHHHHHHHHhcCcchhhhh
Confidence 9999999874 46789999999999999864 4556676654 3444579999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEE
Q 001371 548 EATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1091)
Q Consensus 548 E~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl 593 (1091)
|+|||+-.+.|..+.++.++. |-+.|-||||++..+.-...+-.
T Consensus 638 EcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 638 ECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred hhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 999999999999999998874 78999999999988765555544
No 378
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-30 Score=260.42 Aligned_cols=215 Identities=29% Similarity=0.469 Sum_probs=183.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCcEEEECCccccCCChHH-Hh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQW-IR 459 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~--~~~~~G~I~idg~~i~~~~~~~-lr 459 (1091)
-++++|++.+-.++ +++|+++||+|++||+.||.||+|||||||.+.|+|. |++++|+|.+||.||.++++++ -|
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 36889999987531 4899999999999999999999999999999999997 6899999999999999999976 45
Q ss_pred hceeEEeccCccccc-cHHHHhccCCC------C---CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH
Q 001371 460 KKIGLVSQEPVLFTG-SIKDNIAYGKD------D---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1091)
Q Consensus 460 ~~ia~V~Q~~~Lf~~-TIreNI~~g~~------~---~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ 529 (1091)
.-|....|.|.=+.| |+++=+..+.. . ...+++.++++..++++... +-.|++ .+|||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l------~R~vN~---GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL------ERYVNE---GFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh------hcccCC---CcCcchHH
Confidence 679999999998887 77776653311 1 22456777888888877332 233444 59999999
Q ss_pred HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhcc--CeEEEEeCCEEeeecChhH
Q 001371 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNA--DMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 530 RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~a--D~Iivl~~G~Ive~Gt~~e 606 (1091)
|.-|+.+++-+|++.|||||-|+||..+-+.|-+.+..+. +++++++|||+-..+.+. |++.||-+|+|+..|.+ |
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999998876 578999999998877765 99999999999999999 7
Q ss_pred Hhc
Q 001371 607 LVE 609 (1091)
Q Consensus 607 L~~ 609 (1091)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 765
No 379
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=5.6e-31 Score=265.61 Aligned_cols=214 Identities=24% Similarity=0.445 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.+++++|+.+|. +..+++||||++++|+..+++||+|+||||.+++|+|+.+|++|+|.++|.+++.. .+.+|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRI 74 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhhhc
Confidence 478999999996 45799999999999999999999999999999999999999999999999988753 46689
Q ss_pred eEEeccCcccc-ccHHHHhccCC--CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 463 GLVSQEPVLFT-GSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 463 a~V~Q~~~Lf~-~TIreNI~~g~--~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
||.|.+--|+. .||.|-|.|.. ...+.+++++- +..+++++.-. -.-..+-..||-|..|.|-+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~--~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIV--GKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcccc--ccccchHHHhhhhhhHHHHHHHHHhc
Confidence 99999999997 59999998753 23455555443 35577776421 11223456799999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
+|+++|||||+|+|||.+.+.+.+.|.++. .|.|+|+.|||++.+.. ||+++.|++|+.|-+|+-++..+.
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999999999999999999998765 68999999999999976 999999999999999999988763
No 380
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.3e-30 Score=266.87 Aligned_cols=189 Identities=28% Similarity=0.436 Sum_probs=158.0
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCcccc--cc
Q 001371 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT--GS 475 (1091)
Q Consensus 398 ~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~--~T 475 (1091)
..++|+||||++++||.++|||++|||||||+++|.|.|+|++|+|.++| +|+..---..=|+ -|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G-------------~v~~li~lg~Gf~pelT 105 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-------------KVAPLIELGAGFDPELT 105 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc-------------eEehhhhcccCCCcccc
Confidence 35799999999999999999999999999999999999999999999999 5554433333333 58
Q ss_pred HHHHhccC-----C-CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCC
Q 001371 476 IKDNIAYG-----K-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549 (1091)
Q Consensus 476 IreNI~~g-----~-~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~ 549 (1091)
-||||.+- - ...-++.+.+..+-+.|.+|+. .|| .+.|-|.+.|||.|=|.-.+|+||||||.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~-------~Pv----ktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID-------QPV----KTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhh-------Cch----hhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 99999752 1 1123455677778888888873 444 47999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHH-cCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 550 TSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 550 tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
.|..|+.=.++=++.+.++ .+++|+|+|+|.++.+++ ||++++|++|+|...|+.+|.++.
T Consensus 175 lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 175 LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 9999998555555666666 678999999999999976 999999999999999999998753
No 381
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.97 E-value=1.4e-27 Score=293.44 Aligned_cols=359 Identities=16% Similarity=0.155 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 720 VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSM 799 (1091)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~ 799 (1091)
.+.++++++++.........+++...++...... ....+...+++++++..+..++......+...+...+++.+
T Consensus 20 ~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (588)
T PRK13657 20 LGILLAVANVLLAAATFAEPILFGRIIDAISGKG-----DIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTE 94 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555555555443211 11112233333333333333333333344445555556669
Q ss_pred HHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001371 800 CFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVS 879 (1091)
Q Consensus 800 ~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~ 879 (1091)
+|+++++.|.++|+ ..+.|++++|+++|++.+...+...+..++..++..++.+++.+..+|++++++++++|+.++.
T Consensus 95 l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i 172 (588)
T PRK13657 95 YFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLI 172 (588)
T ss_pred HHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 5779999999999999998887777777777777777777777888999988888877777665
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHH
Q 001371 880 GYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959 (1091)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~ 959 (1091)
.++..+..+...+............+.|.++|+++||+|+.++++.+++.+..+...+...+.....+....+...+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (588)
T PRK13657 173 TTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTI 252 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444444444455666779999999999999999999999998887777766666555555555555555555
Q ss_pred HHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccccc
Q 001371 960 FYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDV 1039 (1091)
Q Consensus 960 ~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~ 1039 (1091)
...+.+++|+.++..|.++.++++............+............+..+..++..+++.+++.+.... ....++.
T Consensus 253 ~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~~~~~~ 331 (588)
T PRK13657 253 TMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPG-AIDLGRV 331 (588)
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCC-CCCcCCC
Confidence 566677889999999999998877655544444444555555566677777777788777765433221111 1111223
Q ss_pred ceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1040 ~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
+|.|+|+||+|+||++ .+||+|+||+|+|||++||||+||||||||-
T Consensus 332 ~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl 378 (588)
T PRK13657 332 KGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI 378 (588)
T ss_pred CCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHH
Confidence 5789999999999753 2599999999999999999999999999973
No 382
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=4.1e-31 Score=261.60 Aligned_cols=136 Identities=38% Similarity=0.718 Sum_probs=126.0
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCcccccc-HHHHh
Q 001371 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS-IKDNI 480 (1091)
Q Consensus 402 L~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~T-IreNI 480 (1091)
|+|+||+|++|++++|+|++|||||||+++|.|.++|.+|+|.+||.++.+.+...+|++++|++|++.+|.+. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999875 9999
Q ss_pred ccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCC
Q 001371 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1091)
Q Consensus 481 ~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tS 551 (1091)
..+++++++++.+++.+ ..++.++.+...||||||||++||||++++|++|||||||+
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 34567888888877655 45788888889999999999999999999999999999996
No 383
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.1e-30 Score=252.57 Aligned_cols=214 Identities=28% Similarity=0.469 Sum_probs=182.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECC-ccccCCChHHH-hh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-INLKEFQLQWI-RK 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg-~~i~~~~~~~l-r~ 460 (1091)
.++++||+.++++ -.+|+|+||++.+||.-+|+||+|+||||++..|.|-.+|+.|++.++| .|+..++...+ |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4788999999963 4699999999999999999999999999999999999999999999999 99999998775 45
Q ss_pred ceeEEeccCccccc-cHHHHhccCCC--------------CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCCh
Q 001371 461 KIGLVSQEPVLFTG-SIKDNIAYGKD--------------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~~-TIreNI~~g~~--------------~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSG 525 (1091)
-||==+|.|..|.. ||+||+.+... ....+++.+++...+|.+--. .-..+||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-----------~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-----------RLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-----------hhhhhhcc
Confidence 69999999999976 99999975421 122346777777777655432 23468999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecCh
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 604 (1091)
||||++-|+--+.++|++|+||||++++-.+.....-+.|+++.+++++++|-|.+.+++. ||+|-||..|.|...|+.
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999544444555667777788999999999999976 999999999999999999
Q ss_pred hHHhcC
Q 001371 605 SKLVED 610 (1091)
Q Consensus 605 ~eL~~~ 610 (1091)
+|+.++
T Consensus 231 d~v~~d 236 (249)
T COG4674 231 DEVQND 236 (249)
T ss_pred HHhhcC
Confidence 998765
No 384
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=3.1e-30 Score=316.66 Aligned_cols=220 Identities=22% Similarity=0.304 Sum_probs=163.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccC---CCCCcEEEECCccccC--CCh--
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLIDGINLKE--FQL-- 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~---~~~~G~I~idg~~i~~--~~~-- 455 (1091)
.|+++|++|+|++ .++|+|+||+|++|+++|||||+|||||||+++|.|.. .|.+|+|...++++.. .+.
T Consensus 177 ~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 177 DIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 5999999999963 46999999999999999999999999999999999864 5889999865543211 111
Q ss_pred ----------HHHhhceeEEeccCccccccHHHHhccCCC-CCCH----HHHHHHHHHccc----------HHHHhhCCC
Q 001371 456 ----------QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATT----EEIRVATELANA----------AKFIDKLPQ 510 (1091)
Q Consensus 456 ----------~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~-~~~~----~~i~~a~~~a~l----------~~~i~~lp~ 510 (1091)
..+++.++|++|+|-+...+..+|...... ..+. +++.++++..++ ...+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l-- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL-- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--
Confidence 123566899999987655565565432110 0111 223333332221 1122222
Q ss_pred Cccc-ccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cC
Q 001371 511 GIDT-LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-AD 588 (1091)
Q Consensus 511 G~~T-~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD 588 (1091)
|++. .....-.+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+|||++..+.. ||
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence 2211 111223579999999999999999999999999999999999999999999886 6899999999999876 99
Q ss_pred eEEEEeCCEEe-eecChhHHhc
Q 001371 589 MIAVIHRGKIV-EKGTHSKLVE 609 (1091)
Q Consensus 589 ~Iivl~~G~Iv-e~Gt~~eL~~ 609 (1091)
+|++|++|++. ..|++++...
T Consensus 410 ~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 410 DILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred EEEEEECCEEEEeCCCHHHHHH
Confidence 99999999996 5788877654
No 385
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=3.5e-30 Score=311.46 Aligned_cols=218 Identities=29% Similarity=0.481 Sum_probs=184.5
Q ss_pred CcEEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC---CCcEEEECCccccCCChH
Q 001371 382 GDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP---QAGEVLIDGINLKEFQLQ 456 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~---~~G~I~idg~~i~~~~~~ 456 (1091)
..++|+|++..-++.+ .+.+|+|||.+++|||..||.||||||||||+++|.|-.+. .+|+|++|| +..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG---~~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG---RPRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC---ccCchh
Confidence 4688999999886542 47899999999999999999999999999999999999974 799999999 456678
Q ss_pred HHhhceeEEeccCccccc-cHHHHhccCC----CC-CCH----HHHHHHHHHcccHHHHhhCCCCccccccc-CCCCCCh
Q 001371 457 WIRKKIGLVSQEPVLFTG-SIKDNIAYGK----DD-ATT----EEIRVATELANAAKFIDKLPQGIDTLVGE-HGTQLSG 525 (1091)
Q Consensus 457 ~lr~~ia~V~Q~~~Lf~~-TIreNI~~g~----~~-~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge-~G~~LSG 525 (1091)
.+|+..|||+||..++.. ||||++.|.. |. .+. ++++++++.-+|.+ + -||.||. .+..+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~-~------~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK-C------ADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh-h------ccceecCCCCCcccc
Confidence 899999999999998874 9999998752 21 233 34455554444432 2 5789985 3358999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchh--hhccCeEEEEeCCEEeeec
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~--i~~aD~Iivl~~G~Ive~G 602 (1091)
|||.|++||--++.||+||+||||||+||+.+...+.+.|+++. +|||||+.=|+++. ....|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999998864 68999999999975 5679999999999999999
Q ss_pred ChhHHhc
Q 001371 603 THSKLVE 609 (1091)
Q Consensus 603 t~~eL~~ 609 (1091)
+.+++.+
T Consensus 254 ~~~~~~~ 260 (613)
T KOG0061|consen 254 SPRELLE 260 (613)
T ss_pred CHHHHHH
Confidence 9988853
No 386
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.96 E-value=9.6e-27 Score=283.12 Aligned_cols=314 Identities=14% Similarity=0.097 Sum_probs=237.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhh-h
Q 001371 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD-A 840 (1091)
Q Consensus 762 ~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~-~ 840 (1091)
.+..+++++.++..++.+++.++....+.+...++|.++|+++++.|++.+ |..++++++|++.+.+.+.. .
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~-------~~~~~~~~~d~~~i~~~~~~~~ 119 (544)
T TIGR01842 47 MLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRRG-------KIDGLQALRDLDQLRQFLTGPG 119 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCc-------cchHHHHHHHHHHHHHHHhhhH
Confidence 345555566666777788888899999999999999999999999998533 45788899999999988766 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccc
Q 001371 841 LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCA 920 (1091)
Q Consensus 841 l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~ 920 (1091)
+..++..++.++ .+++++..+|++++++++.+|++++..++..+..+...+..+.........+.|+++|++|||+|+.
T Consensus 120 ~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~ 198 (544)
T TIGR01842 120 LFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGM 198 (544)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCc
Confidence 555555555444 3456678899998888877777766555555554444444555556667789999999999999999
Q ss_pred hHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHh
Q 001371 921 EEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSS 1000 (1091)
Q Consensus 921 e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1091)
|+++.++|.+..+...+...+.....+....+...+......+.+|+|..++..|.++.++++.+..........+....
T Consensus 199 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~ 278 (544)
T TIGR01842 199 MGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAI 278 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877766666655555555555555544555667789999999999999988776665555555666666
Q ss_pred cccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCC
Q 001371 1001 SFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQ 1080 (1091)
Q Consensus 1001 ~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~S 1080 (1091)
........+..+..++.++++.+++.+... ..++.+|.|+|+||+|+||+.. .++|+|+||+|+|||++||||||
T Consensus 279 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~----~~~~~~~~i~~~~v~~~y~~~~-~~~l~~~~~~i~~G~~~~ivG~s 353 (544)
T TIGR01842 279 GGWKQFSGARQAYKRLNELLANYPSRDPAM----PLPEPEGHLSVENVTIVPPGGK-KPTLRGISFRLQAGEALAIIGPS 353 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccCCC----CCCCCCCeEEEEEEEEEcCCCC-ccccccceEEEcCCCEEEEECCC
Confidence 777888899999999999887544322111 1122368899999999997542 36999999999999999999999
Q ss_pred CCCccccc
Q 001371 1081 FHSLKQLT 1088 (1091)
Q Consensus 1081 G~~~~~~~ 1088 (1091)
|||||||-
T Consensus 354 GsGKSTL~ 361 (544)
T TIGR01842 354 GSGKSTLA 361 (544)
T ss_pred CCCHHHHH
Confidence 99999974
No 387
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=1.3e-29 Score=297.28 Aligned_cols=208 Identities=33% Similarity=0.487 Sum_probs=167.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
.|+++|++++|+ ++++|+|+||++.+|+++||||++|||||||+++|.|..+|++|+|..++. -+|
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 488999999995 457999999999999999999999999999999999999999999998862 169
Q ss_pred eEEeccCccccc-cHHHHhccCCCCCCH--HHHHHHHH------------------H-------cccHHHHhhCCCCc-c
Q 001371 463 GLVSQEPVLFTG-SIKDNIAYGKDDATT--EEIRVATE------------------L-------ANAAKFIDKLPQGI-D 513 (1091)
Q Consensus 463 a~V~Q~~~Lf~~-TIreNI~~g~~~~~~--~~i~~a~~------------------~-------a~l~~~i~~lp~G~-~ 513 (1091)
+|++|++.+.+. |++|.+.-|.....+ .+++.+.. . +.+...+..|.-.. +
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~ 148 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDED 148 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCccc
Confidence 999999999975 999999877542111 11111110 0 11222233331111 4
Q ss_pred cccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEE
Q 001371 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAV 592 (1091)
Q Consensus 514 T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iiv 592 (1091)
++++ +||||||-|++|||||+.+||||||||||.+||.++-.-+.+-|.+. ++ |+|+|||.-.++.+ |++|+-
T Consensus 149 ~~~~----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ 222 (530)
T COG0488 149 RPVS----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILE 222 (530)
T ss_pred Cchh----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEE
Confidence 5554 69999999999999999999999999999999999999999999864 55 99999999999987 999999
Q ss_pred EeCCEEe-eecChhHHhcC
Q 001371 593 IHRGKIV-EKGTHSKLVED 610 (1091)
Q Consensus 593 l~~G~Iv-e~Gt~~eL~~~ 610 (1091)
+++|++. ..|+|+.-++.
T Consensus 223 ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 223 LDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred ecCCceeEecCCHHHHHHH
Confidence 9999876 46888777654
No 388
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.96 E-value=2.8e-26 Score=279.06 Aligned_cols=307 Identities=13% Similarity=0.093 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHH
Q 001371 770 LGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNIS 849 (1091)
Q Consensus 770 l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~ 849 (1091)
+.++..++.+++.++..+.+.+...++|.++|+++++.|++||+ .+++|++++|+++|++.+...+. .+..++..++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~ 133 (547)
T PRK10522 57 LLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGII 133 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHH
Confidence 33444556677888888999999999999999999999999999 67799999999999999998664 5677788888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccch---HHHHH
Q 001371 850 TAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE---EKVMQ 926 (1091)
Q Consensus 850 ~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e---~~f~~ 926 (1091)
.+++.+++++.++|++++++++++|+.++..+...+..+...+..+.........+.|.++|+++++ ++.+ +++.+
T Consensus 134 ~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~ 212 (547)
T PRK10522 134 LTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFEN 212 (547)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHH
Confidence 8888888888999999999888888876665555444444444445556667788999999999995 5543 46777
Q ss_pred HHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccH
Q 001371 927 LYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDS 1006 (1091)
Q Consensus 927 ~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1091)
+|.+..+...+...+..........+.........++.++++..+. .+. ..........+......+..........
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~pl~~l~~~~~~~ 289 (547)
T PRK10522 213 EYEPDAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSLG-WAD--TNVAATYSLTLLFLRTPLLSAVGALPTL 289 (547)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776666554444433333222222222222333344443321 111 1111111111111223344555556677
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccc
Q 001371 1007 NKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQ 1086 (1091)
Q Consensus 1007 ~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~ 1086 (1091)
..+..+..++.++.+.+++.+.+. +. +.+..+.|+|+||+|+||++ .++|+|+||+|+|||++||||||||||||
T Consensus 290 ~~~~~a~~ri~~l~~~~~~~~~~~--~~-~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKST 364 (547)
T PRK10522 290 LSAQVAFNKLNKLALAPYKAEFPR--PQ-AFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKST 364 (547)
T ss_pred HHHHHHHHHHHHHhcccccccccc--cc-ccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHH
Confidence 788888888888765332211111 11 11124789999999999743 25999999999999999999999999999
Q ss_pred cc
Q 001371 1087 LT 1088 (1091)
Q Consensus 1087 ~~ 1088 (1091)
|-
T Consensus 365 L~ 366 (547)
T PRK10522 365 LA 366 (547)
T ss_pred HH
Confidence 74
No 389
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=7.9e-29 Score=265.62 Aligned_cols=192 Identities=25% Similarity=0.362 Sum_probs=126.2
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHH-HHHhccCCCCCcEEEEC-C------ccccCC---ChHHHhh-ceeEE
Q 001371 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVI-SLIERFYDPQAGEVLID-G------INLKEF---QLQWIRK-KIGLV 465 (1091)
Q Consensus 398 ~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl-~ll~g~~~~~~G~I~id-g------~~i~~~---~~~~lr~-~ia~V 465 (1091)
+.++|+|+||+|++||+++|+||||||||||+ ..+. .+|++.+. + ..+..+ ....++. ..++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 45799999999999999999999999999996 3332 13332211 0 011001 0111221 23444
Q ss_pred eccCcc-cc-----ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCccc-ccccCCCCCChHHHHHHHHHHHhh
Q 001371 466 SQEPVL-FT-----GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 466 ~Q~~~L-f~-----~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T-~vge~G~~LSGGQkQRialARAll 538 (1091)
.|++.. ++ +++.+...+-..-...++..+. .+.++.+ |+.. .......+||||||||++||||++
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~ 153 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIG 153 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHH
Confidence 454431 11 1122211110000001111110 1223332 2222 245566789999999999999999
Q ss_pred cCC--CEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEE------eCCEEeeec
Q 001371 539 KDP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKG 602 (1091)
Q Consensus 539 ~~~--~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl------~~G~Ive~G 602 (1091)
++| +++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 998 5999999999999999999999998764 578999999999999999999999 999999987
No 390
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=5.2e-29 Score=268.81 Aligned_cols=194 Identities=25% Similarity=0.387 Sum_probs=145.1
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh-----c-cC----CCCCc-----------EEEECCccccCCCh---
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-----R-FY----DPQAG-----------EVLIDGINLKEFQL--- 455 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~-----g-~~----~~~~G-----------~I~idg~~i~~~~~--- 455 (1091)
..|+|++++||.|.+++|+|+||||||||++.++ + +. .|..+ -|.+|..+|..-+.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998663 2 11 12222 36677766643221
Q ss_pred -------HHHhh----------------ceeEEeccCc-cccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCC
Q 001371 456 -------QWIRK----------------KIGLVSQEPV-LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511 (1091)
Q Consensus 456 -------~~lr~----------------~ia~V~Q~~~-Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G 511 (1091)
+.+|+ .+.|..++.. +.+.|+.||+.|.......++..++++.. |
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~v-----------g 157 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDV-----------G 157 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHc-----------C
Confidence 11222 1445555554 34568888887654322223333333333 3
Q ss_pred ccc-ccccCCCCCChHHHHHHHHHHHhhcC---CCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc
Q 001371 512 IDT-LVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN 586 (1091)
Q Consensus 512 ~~T-~vge~G~~LSGGQkQRialARAll~~---~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~ 586 (1091)
++. ..+....+||||||||++|||||.++ |+++||||||++||++....+.+.|+++. ++.|+|+|+|++..++.
T Consensus 158 L~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 158 LGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred CchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 433 35777889999999999999999996 79999999999999999999999998865 47899999999999999
Q ss_pred cCeEEEE------eCCEEeeecCh
Q 001371 587 ADMIAVI------HRGKIVEKGTH 604 (1091)
Q Consensus 587 aD~Iivl------~~G~Ive~Gt~ 604 (1091)
||+|++| ++|+|+++|++
T Consensus 238 aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 238 ADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999 89999999974
No 391
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6e-28 Score=230.35 Aligned_cols=227 Identities=28% Similarity=0.455 Sum_probs=177.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECC-----ccccCCChHH
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-----INLKEFQLQW 457 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg-----~~i~~~~~~~ 457 (1091)
-+++++++..|.. ..-.+|+||++-|||..+|||+||||||||+++|.+-+.|+.|+|..+- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~---~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGP---GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCC---CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 3678999999964 3478999999999999999999999999999999999999999999865 3455555444
Q ss_pred ----HhhceeEEeccCc--c-ccccHHHHhc-----cCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCCh
Q 001371 458 ----IRKKIGLVSQEPV--L-FTGSIKDNIA-----YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1091)
Q Consensus 458 ----lr~~ia~V~Q~~~--L-f~~TIreNI~-----~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSG 525 (1091)
+|.-=|+|-|+|- | ..-|---||- .|... .-.+.. .+.+++++..- ..+.+.+....+||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH--YG~iR~-----~a~~WL~~VEI-~~~RiDD~PrtFSG 154 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH--YGNIRA-----EAQDWLEEVEI-DLDRIDDLPRTFSG 154 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhh--hhhHHH-----HHHHHHHhccc-CcccccCcccccch
Confidence 3445799999994 1 1112222331 11111 111221 23466666542 34567778899999
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCeEEEEeCCEEeeec
Q 001371 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 602 (1091)
|.+||+-|||-|...|+++++||||-+||....+.+.+.++.+-. +-.+++|||.+...+- ||+.+||++|+++|+|
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 999999999999999999999999999999999999998887653 5689999999998874 9999999999999999
Q ss_pred ChhHHhcCCCchhHHHHH
Q 001371 603 THSKLVEDPEGAYSQLIR 620 (1091)
Q Consensus 603 t~~eL~~~~~~~y~~l~~ 620 (1091)
--+..+..+...|.+|.-
T Consensus 235 LTDrvLDDP~hPYTQLLV 252 (258)
T COG4107 235 LTDRVLDDPHHPYTQLLV 252 (258)
T ss_pred cccccccCCCCchHHHHH
Confidence 999998887778887753
No 392
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=2.1e-27 Score=278.76 Aligned_cols=203 Identities=29% Similarity=0.412 Sum_probs=175.3
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
.-++++|++++|+++ +++++++||.|++|+++|||||+|+|||||+++|+|...|.+|+|.+.-. + +
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v----------~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V----------K 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------E
Confidence 358999999999642 58999999999999999999999999999999999999999999987642 2 6
Q ss_pred eeEEeccC-ccc-cccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 462 IGLVSQEP-VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 462 ia~V~Q~~-~Lf-~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
+||.+|+- .++ +.|+-|++.-+.|+..+.++...+...+....-. .++| ..||||||-|+.||+.++.
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~------~~~v----~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ------EKPV----GVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH------hCch----hhcCHhHHHHHHHHHHhcc
Confidence 99999987 343 3489999987776666788888888877655432 3344 4699999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEeee-cChhHHhcC
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK-GTHSKLVED 610 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~-Gt~~eL~~~ 610 (1091)
+|.+|||||||..||.++-..+.++|.+. .-|+|+|||.-.++.. |++|+++++ ++.+. |+|++..+.
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 99999999999999999999999999886 4599999999999987 999999999 77776 888887654
No 393
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=4.6e-28 Score=248.70 Aligned_cols=202 Identities=25% Similarity=0.395 Sum_probs=155.9
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEe-c---cCccccc
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS-Q---EPVLFTG 474 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~-Q---~~~Lf~~ 474 (1091)
-++.+||||+||||+.++++||+|+||||++|+|.|...|++|.|.++|.+--+-..+.+| ++++|. | --|=.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~-~~~~v~gqk~ql~Wdlp- 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SIGLVMGQKLQLWWDLP- 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH-HHHHHhhhhheeeeech-
Confidence 3589999999999999999999999999999999999999999999999877664444555 444442 2 223221
Q ss_pred cHHHHhccCC--CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCC
Q 001371 475 SIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1091)
Q Consensus 475 TIreNI~~g~--~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSa 552 (1091)
+.|-+..-+ -+.+++++.+- ++.+.+-| +++..+-..-..||=|||-|.-||-||+++|+||+|||||=+
T Consensus 115 -~~ds~~v~~~Iy~Ipd~~F~~r-----~~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 -ALDSLEVLKLIYEIPDDEFAER-----LDFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred -hhhhHHHHHHHHhCCHHHHHHH-----HHHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 222221111 12344444332 12222222 345555556678999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 553 LDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 553 LD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
||..+...|.+.+++.. .+.|+++.||.++-|.. ||||++|++|+++..||.++|.++
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 99999999999998754 57899999999998765 999999999999999999999875
No 394
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.4e-28 Score=234.96 Aligned_cols=187 Identities=23% Similarity=0.394 Sum_probs=158.5
Q ss_pred EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeE
Q 001371 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1091)
Q Consensus 385 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~ 464 (1091)
+.+|++..- .+..++.++||++.+||.+-|+||+|||||||+++|.|+++|++|+|.++|.+++..... .++..-|
T Consensus 4 ~a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~-~~~~l~y 79 (209)
T COG4133 4 EAENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES-YHQALLY 79 (209)
T ss_pred hhhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhh-HHHHHHH
Confidence 345555433 356799999999999999999999999999999999999999999999999999876543 4778999
Q ss_pred EeccCcccc-ccHHHHhccCCC---CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC
Q 001371 465 VSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1091)
Q Consensus 465 V~Q~~~Lf~-~TIreNI~~g~~---~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~ 540 (1091)
...+|-+=. -|+.||+.|... ..+++.+++|++.++|.++ . |.+++ +||-||+.|+||||-.+..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~------dlp~~----~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-E------DLPVG----QLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-c------ccchh----hcchhHHHHHHHHHHHcCC
Confidence 999988765 599999998753 2457889999999999775 3 44454 6999999999999999999
Q ss_pred CCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc
Q 001371 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN 586 (1091)
Q Consensus 541 ~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~ 586 (1091)
+|+.|||||++|||.+.+..+...+.... +|-.||+.||+.--+..
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 99999999999999999999988887654 67789999999766544
No 395
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=9e-28 Score=251.15 Aligned_cols=163 Identities=23% Similarity=0.299 Sum_probs=133.4
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC---------cEEEECCccccCCChHHHhhceeEEeccCcccc
Q 001371 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---------GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT 473 (1091)
Q Consensus 403 ~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~---------G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~ 473 (1091)
+++++++++| +++|+||||||||||+++|.++..|.. |++.++|.++... ..+.+|+||+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 4677888776542 2457899999999888
Q ss_pred ccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh----cCCCEEEeeCC
Q 001371 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEA 549 (1091)
Q Consensus 474 ~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll----~~~~IliLDE~ 549 (1091)
|+.. ..+++.++++. ++-.+. ....||||||||++||||+. ++|+++|||||
T Consensus 89 --------~~~~--~~~~~~~~l~~----------~~~~~~----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 --------YSII--SQGDVSEIIEA----------PGKKVQ----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --------eeEE--ehhhHHHHHhC----------CCcccc----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 3321 23455555544 222233 34579999999999999985 57799999999
Q ss_pred CCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEe
Q 001371 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1091)
Q Consensus 550 tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~ 594 (1091)
|++||+.....+.+.|+++.++.|+|+|||+++.+..||+++.+.
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEE
Confidence 999999999999999998877899999999999999999999984
No 396
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.94 E-value=1.2e-24 Score=268.33 Aligned_cols=364 Identities=10% Similarity=-0.000 Sum_probs=253.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 720 VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE-LKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRS 798 (1091)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~ 798 (1091)
.+++.+++.++.........++.+..++.....+.. .......|..+++++.++..+..+++..+......+..+++|+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555666777766654432111 1111222344444555556666666667777788889999999
Q ss_pred HHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Q 001371 799 MCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFT-ASWQLALIILVMLPLIG 877 (1091)
Q Consensus 799 ~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~-~~w~l~l~~i~~~pl~~ 877 (1091)
+.|++....+++|||. ++|.+++|+++|++.+.+.+...+..++..++.+++.++..+. .+|++++++++.+|+.+
T Consensus 177 ~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~ 253 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATG 253 (659)
T ss_pred HHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 9999999999999993 5799999999999999999999999999999998887776665 89999998888889888
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHH
Q 001371 878 VSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLL 957 (1091)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~ 957 (1091)
+..++..+......+..+.....-.....|.++|+.+|++|+.|+++.+++.+..+.......+.....+....+...+.
T Consensus 254 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 333 (659)
T TIGR00954 254 VVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVA 333 (659)
T ss_pred HHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 87777776666666666666666778899999999999999999999999988877777766666655555444444333
Q ss_pred HHHHHHH--HHHhhHhhc-----cCCcCHHHHHHHHHHHH----HHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCC
Q 001371 958 FAFYAAS--FYAGARLVE-----DGKATFSDVFKVFFSLT----MTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1091)
Q Consensus 958 ~~~~a~~--~~~g~~li~-----~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~ 1026 (1091)
....+.. .+.|...+. .|.++.+.++..++... .....+........+...+..+..+++++++..++.
T Consensus 334 ~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~ 413 (659)
T TIGR00954 334 KYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDV 413 (659)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211222 222332222 25666665554333321 223345555666778888999999999888643221
Q ss_pred C------C--CC-CC------------C-CcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCc
Q 001371 1027 D------P--SD-ES------------G-TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSL 1084 (1091)
Q Consensus 1027 ~------~--~~-~~------------~-~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~ 1084 (1091)
+ + ++ +. + .......|.|+|+||+++||++ .++|+|+||+|++||++||||||||||
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGsGK 491 (659)
T TIGR00954 414 KSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGCGK 491 (659)
T ss_pred hcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCCCH
Confidence 1 0 00 00 0 0011135789999999999743 259999999999999999999999999
Q ss_pred cccc
Q 001371 1085 KQLT 1088 (1091)
Q Consensus 1085 ~~~~ 1088 (1091)
|+|-
T Consensus 492 STLl 495 (659)
T TIGR00954 492 SSLF 495 (659)
T ss_pred HHHH
Confidence 9973
No 397
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.4e-23 Score=237.77 Aligned_cols=354 Identities=18% Similarity=0.238 Sum_probs=260.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 726 IAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVI 805 (1091)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl 805 (1091)
++.++.++......+++.......+.... ......++...+++.++-.+..+.+......++.++-..||.++++++.
T Consensus 7 ll~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~ 84 (559)
T COG4988 7 LLAVLSGIAIIAQAALLADILTKLIEGQL--FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLA 84 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556666666665543221 1223345566666677777888888888888999999999999999999
Q ss_pred hCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001371 806 HMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMK 885 (1091)
Q Consensus 806 ~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~ 885 (1091)
+.+-.|=. ..|+|.....++.-++.++.-+...+.++..+.+..+..++.++..+|.-+++++.+.|++.++.++...
T Consensus 85 ~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~ 162 (559)
T COG4988 85 KLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGL 162 (559)
T ss_pred hCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 6889999999999999999999999999999999998888999999999999999999999998888777
Q ss_pred HHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHH---HHHHHHHHHHHHHHHHHHHHH
Q 001371 886 FMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIR---QGMVSGGGFGASFFLLFAFYA 962 (1091)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r---~~~~~~~~~g~~~~~~~~~~a 962 (1091)
.-+...+.+=.....-+.+|-+.+.|+.|+|+|+..++-.++..+..+..++.+++ .+..++...-+...+..++.
T Consensus 163 ~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlv- 241 (559)
T COG4988 163 AAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALV- 241 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 66666666656666778899999999999999999998888888877777765554 34444443333333333322
Q ss_pred HHHHHhhHhhccCCcCHHH-HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccce
Q 001371 963 ASFYAGARLVEDGKATFSD-VFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKG 1041 (1091)
Q Consensus 963 ~~~~~g~~li~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G 1041 (1091)
..+.|.+++..|.+++.. ++..+++..+ ...+-...+..-....+..++..++...+.+.+..+..+..+..+....
T Consensus 242 -Av~~g~~ll~~G~ltl~~~l~~LiLAPEf-f~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 242 -AVYIGFRLLGEGDLTLFAGLFVLILAPEF-FQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred -HHHHHHHHHccCCccHHHHHHHHHHhHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 245667776645655432 2223333333 2344555566666777777788888888766554333322122233456
Q ss_pred eEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1042 ~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
+|+++|++++||+.+ ++++|+||+++|||.+||||+||||||+|.
T Consensus 320 ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl 364 (559)
T COG4988 320 EISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLL 364 (559)
T ss_pred eeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHH
Confidence 788889999998664 699999999999999999999999999974
No 398
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=1.2e-26 Score=246.87 Aligned_cols=192 Identities=19% Similarity=0.199 Sum_probs=144.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEee-CCCEEEEEcCCCCcHHHHHHHHhc-cCCCCCcEEEECCccccCCChHHHhh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISIS-SGTTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGINLKEFQLQWIRK 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~-~G~~vaIVG~sGsGKSTLl~ll~g-~~~~~~G~I~idg~~i~~~~~~~lr~ 460 (1091)
.|+++|+. +|.++ ++++|+.. +|++++|+||+|||||||+++|.+ +|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58899988 77432 56777654 599999999999999999999994 666666666544 2233444455677
Q ss_pred ceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCC-cccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG-IDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G-~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
.|++++|++.. ...++.++ ..+.++..+... ++.| +++.+...+.+||||||||++||||+..
T Consensus 77 ~v~~~f~~~~~----~~~~~r~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGK----KYRVERSR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCe----EEEEEEec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 89999999843 22333333 345554443321 2222 4555566778999999999999999974
Q ss_pred ----------CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCeEEEEeCCEE
Q 001371 540 ----------DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1091)
Q Consensus 540 ----------~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~-aD~Iivl~~G~I 598 (1091)
+|+++||||||++||+.+...+.+.+.++.+ ++|+|+|||+++.+.. ||+|+++++|.+
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999988765 7899999999998765 899999998853
No 399
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.9e-26 Score=251.43 Aligned_cols=191 Identities=25% Similarity=0.320 Sum_probs=137.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc----------------CCCCCc------
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF----------------YDPQAG------ 441 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~----------------~~~~~G------ 441 (1091)
|+++|. .+|. +..++++++ |++++|+||+|||||||+++|.+. ..+.+|
T Consensus 4 i~~~nf-ksy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 4 VIIQGF-KSYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEeCc-cCcc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 555542 1354 245777776 889999999999999999999843 344445
Q ss_pred --EEEECCccccC-C--ChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHH--hhCCCCcc-
Q 001371 442 --EVLIDGINLKE-F--QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI--DKLPQGID- 513 (1091)
Q Consensus 442 --~I~idg~~i~~-~--~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i--~~lp~G~~- 513 (1091)
+|.+++.+-.. + +...+++++++++|++.++. ...+.+++..+++.+++.+.- ..+|+|..
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~-----------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~ 143 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK-----------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKIN 143 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC-----------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchH
Confidence 45555432110 0 11234566777777665532 235667777777777664321 01233322
Q ss_pred ------cccccCCCCCChHHHHHHHHHHHhh----cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchh
Q 001371 514 ------TLVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1091)
Q Consensus 514 ------T~vge~G~~LSGGQkQRialARAll----~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~ 583 (1091)
....+++.+||||||||++||||++ ++|+++||||||++||+.+.+.+.+.|+++.+++|+|+++|+...
T Consensus 144 ~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~ 223 (243)
T cd03272 144 SLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPEL 223 (243)
T ss_pred HhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 2245678899999999999999996 468999999999999999999999999988777888999999988
Q ss_pred hhccCeEEEEe
Q 001371 584 VRNADMIAVIH 594 (1091)
Q Consensus 584 i~~aD~Iivl~ 594 (1091)
.+.||+|++|+
T Consensus 224 ~~~~d~i~~l~ 234 (243)
T cd03272 224 LEVADKFYGVK 234 (243)
T ss_pred HhhCCEEEEEE
Confidence 88999999995
No 400
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.4e-26 Score=218.87 Aligned_cols=200 Identities=27% Similarity=0.351 Sum_probs=143.2
Q ss_pred EEEEeEEEECC--C--CCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECC----ccccCCCh
Q 001371 384 IELRDVYFSYP--A--RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG----INLKEFQL 455 (1091)
Q Consensus 384 I~~~~vsf~Y~--~--~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg----~~i~~~~~ 455 (1091)
+..+|++.++- . .-.-|||+|+||+++.||++++-||||+|||||++.|-+-|.|++|+|.+.- .|+-...+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 56667755441 1 1124799999999999999999999999999999999999999999999853 24444444
Q ss_pred HH----HhhceeEEeccCcccc-----ccHHHHhc-cCCCCCC--HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCC
Q 001371 456 QW----IRKKIGLVSQEPVLFT-----GSIKDNIA-YGKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1091)
Q Consensus 456 ~~----lr~~ia~V~Q~~~Lf~-----~TIreNI~-~g~~~~~--~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~L 523 (1091)
.+ -|+.||||+|---... +-+.|-+. .|-+ .+ .++....+..-++-+-+=+|| ..++
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~-~~~a~~~a~~Ll~rLnlperLW~La----------PaTF 153 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP-REVARAKAADLLTRLNLPERLWSLA----------PATF 153 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC-HHHHHHHHHHHHHHcCCCHHHhcCC----------Cccc
Confidence 32 3567999999432211 11223222 2322 11 112222333333434333443 3689
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEe
Q 001371 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIH 594 (1091)
Q Consensus 524 SGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~ 594 (1091)
|||++||+.|||.++-|-|||+|||||++||+...+.+.+.|.+.. +|...|=|=|.-+.=.. |||++-+.
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 9999999999999999999999999999999999999999998754 57777779999765443 89998764
No 401
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.2e-22 Score=225.61 Aligned_cols=296 Identities=18% Similarity=0.167 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001371 784 FFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASW 863 (1091)
Q Consensus 784 ~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w 863 (1091)
.---+..+.-..||.++|+++.-.+-.--+ .-..|+++||+..|++.+|+..=-.+.-++..++..++.++...+.+|
T Consensus 81 vsH~AtfrvL~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~ 158 (573)
T COG4987 81 VSHDATFRVLSALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSI 158 (573)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 333466778889999999999887766555 344799999999999999998766666666666655555555556777
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHH
Q 001371 864 QLALIIL-VMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQ 942 (1091)
Q Consensus 864 ~l~l~~i-~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~ 942 (1091)
.+++.+. .++.+.++.=++..++-+...+..+.....-.+.+.+.+.|..-.+.||.+++|.+.+.+..+...+.-.+.
T Consensus 159 ~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~ 238 (573)
T COG4987 159 PLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQ 238 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765443 222222333334444444444444445555567899999999999999999999999988766665554454
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHH
Q 001371 943 GMVSGGGFGASFFLLFAFY-AASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSS--FSSDSNKAKSAAASIFAI 1019 (1091)
Q Consensus 943 ~~~~~~~~g~~~~~~~~~~-a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~aa~~i~~~ 1019 (1091)
..+.+..-.+.+.+..... +...|.++. ...|..+......+ +...++.+....... ......+...++.++..+
T Consensus 239 ~~~~~~~~a~~~l~~g~~v~~~l~w~a~~-~~~G~~~~~~aa~~-ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i 316 (573)
T COG4987 239 ARFTGLSDAILLLIAGLLVIGLLLWMAAQ-VGAGALAQPGAALA-LLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDI 316 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCCCcchhHHHHH-HHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhh
Confidence 4444332222222222222 234555432 34444432211111 111122222222222 225667778888899888
Q ss_pred HcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCcccc
Q 001371 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQL 1087 (1091)
Q Consensus 1020 i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~ 1087 (1091)
+++.++...+.+.. +.+.. .++++||+|+||+. +.+||+|+||++++||+|||||+||||||||
T Consensus 317 ~~q~~e~~~~~~~~--~~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTl 380 (573)
T COG4987 317 LDQKPEVTFPDEQT--ATTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTL 380 (573)
T ss_pred ccCCcccCCCcccc--CCccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHH
Confidence 88777665552211 11112 89999999999965 4469999999999999999999999999987
No 402
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.92 E-value=9.7e-22 Score=216.95 Aligned_cols=272 Identities=18% Similarity=0.311 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGL 141 (1091)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 141 (1091)
++++++.++.++..+..|++++.++|.+...... .........+.++++.++.........+...+.+.++..++|.+
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD--NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKR 79 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777778888899999999985433221 11122222222333334444555555555678899999999999
Q ss_pred HHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001371 142 YLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSG 221 (1091)
Q Consensus 142 ~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~pl~~~~~ 221 (1091)
+++|+++.|..+|+++ ++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+++++++..|+..++.
T Consensus 80 ~~~~~~~~~~~~~~~~-~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 158 (275)
T PF00664_consen 80 LFEKLLRLPYSYFDKN-SSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLIS 158 (275)
T ss_dssp HHHHHHHSHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhh-cccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhh
Confidence 9999999999999987 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 222 GVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCS 301 (1091)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1091)
.++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+.....+....+..++..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (275)
T PF00664_consen 159 FIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLS 238 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHH
Q 001371 302 YALSVWYGGKL-ILEEGYNGGQVVNVMVAVLTGSMS 336 (1091)
Q Consensus 302 ~~~~~~~g~~l-~~~~~~t~g~l~~~~~~~~~~~~~ 336 (1091)
.++++++|+.+ +..|.+++|++++++.+......|
T Consensus 239 ~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 239 IVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 89999999999 999999999999887776655544
No 403
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=7.6e-25 Score=276.74 Aligned_cols=215 Identities=22% Similarity=0.434 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCC-ChHHHhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~-~~~~lr~~ 461 (1091)
.+..+|++..|+.+. . +.+++||.|++||+.++-|++||||||+++++.|...|++|++.++|.++..- +....|++
T Consensus 564 ~~~~~~L~k~y~~~~-~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKD-G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred eEEEcceeeeecchh-h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 578999999997542 2 99999999999999999999999999999999999999999999999999754 55568999
Q ss_pred eeEEeccCccccc-cHHHHhccCC-----CCCC-HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH
Q 001371 462 IGLVSQEPVLFTG-SIKDNIAYGK-----DDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~-TIreNI~~g~-----~~~~-~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA 534 (1091)
+||+||+..|+.. |.||.+.+-. |..+ .+.+...++..++.+.. ++++ .++|||+|.|+++|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~-------~~~~----~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYA-------NKQV----RTYSGGNKRRLSFA 710 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhh-------ccch----hhCCCcchhhHHHH
Confidence 9999999998875 9999997642 2111 23366777777776654 3443 47999999999999
Q ss_pred HHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCC-CeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 535 RAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~-~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
-|++.+|++++|||||+++||.+++.+-+.|.+..++ |.+|+.||.++..+. |||+.+|.+|++...|+.++|.++
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 9999999999999999999999999999999988765 499999999999876 999999999999999999999765
No 404
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=1e-24 Score=229.60 Aligned_cols=163 Identities=24% Similarity=0.294 Sum_probs=130.0
Q ss_pred eeEEeeCCCEEEEEcCCCCcHHHHHHHHh----ccCCCCCcEEEECCccccCCChHHHhhceeEEeccC-----cccc-c
Q 001371 405 FSISISSGTTAALVGQSGSGKSTVISLIE----RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-----VLFT-G 474 (1091)
Q Consensus 405 isl~i~~G~~vaIVG~sGsGKSTLl~ll~----g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~-----~Lf~-~ 474 (1091)
.++++.+| +++|+||+|||||||+.+|. |...|..|.+..+...+ .....+..|++++|++ .++. -
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i---~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLI---REGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHH---hCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999994 99888888776222222 2234566899999998 4433 2
Q ss_pred cHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH------HHHHHHhhcCCCEEEeeC
Q 001371 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR------IAIARAILKDPRILLLDE 548 (1091)
Q Consensus 475 TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR------ialARAll~~~~IliLDE 548 (1091)
|+.||+.++. ++++.+.+ .+....||+||||| ++||||+..+|+++||||
T Consensus 92 ~~~~~~~~~~----~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 92 AILENVIFCH----QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hHhhceeeec----hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 9999998752 33333222 44556899999996 799999999999999999
Q ss_pred CCCCCCHHhHH-HHHHHHHHHcC--CCeEEEEccCchhhhccCeEEEEeC
Q 001371 549 ATSALDAESEK-VVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHR 595 (1091)
Q Consensus 549 ~tSaLD~~te~-~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~ 595 (1091)
||++||+.+.. .+.+.|+++.+ ++|+|+|||.+..+..||+|++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999888 99999988765 6899999999999999999999964
No 405
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.3e-22 Score=223.42 Aligned_cols=317 Identities=17% Similarity=0.220 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHH
Q 001371 763 WALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALA 842 (1091)
Q Consensus 763 ~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~ 842 (1091)
-+..|.+..+.+.+|.-++.+.|.++..++.++.-.+.|+..++.+++||-+. .+|.|.++..+-...|...+...+.
T Consensus 76 ~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~--~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 76 LLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSR--GTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCC--CcchHHHHHHhhhhHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999954 3789888888888888877777766
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccch
Q 001371 843 RIVQNISTAAAGLIIA-FTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE 921 (1091)
Q Consensus 843 ~~~~~~~~~~~~~i~~-~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e 921 (1091)
.++..++.+..+.... .-+++..+++.+..+....++.+..-+++...|+....+...++..+.+++.|-.+|++||.|
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 6666665544444222 234665555555555555555555566667778888888889999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHh
Q 001371 922 EKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLF-AFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSS 1000 (1091)
Q Consensus 922 ~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~-~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1091)
++-.++|+..+....+.+.+....-++ .-+.+-+.+ ...+...+.|+.-+..+.++..|+....-....-...+....
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~~sl~~-lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg 312 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYSSSLAF-LNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLG 312 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHH
Confidence 999999999988887766554333222 222222222 222333444555466667776665432211111122222222
Q ss_pred cccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCC
Q 001371 1001 SFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQ 1080 (1091)
Q Consensus 1001 ~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~S 1080 (1091)
....+..++..-+..++...+....+.. . +.++...+|.|+|+||+|.|+ |..+||||+||+|++||+|||||+|
T Consensus 313 ~vyr~~~q~l~Dm~~~~~l~~~~~~i~~--~-~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~n 387 (591)
T KOG0057|consen 313 SVYRELRQALTDMRTLFILLEVDEDIQE--A-ALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSN 387 (591)
T ss_pred HHHHHHHHHHHhHHHHHhhhhhhhhhhh--c-cCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCC
Confidence 2233333333333334333322222111 0 111223478899999999996 3445999999999999999999999
Q ss_pred CCCcccc
Q 001371 1081 FHSLKQL 1087 (1091)
Q Consensus 1081 G~~~~~~ 1087 (1091)
|||||++
T Consensus 388 GsGKSTi 394 (591)
T KOG0057|consen 388 GSGKSTI 394 (591)
T ss_pred CCCHHHH
Confidence 9999985
No 406
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=1.4e-24 Score=237.44 Aligned_cols=182 Identities=19% Similarity=0.252 Sum_probs=138.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCC-CcEEEECCc-cccCCC-h-HHHhhceeEEeccCcc---------c-cccHH
Q 001371 412 GTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGI-NLKEFQ-L-QWIRKKIGLVSQEPVL---------F-TGSIK 477 (1091)
Q Consensus 412 G~~vaIVG~sGsGKSTLl~ll~g~~~~~-~G~I~idg~-~i~~~~-~-~~lr~~ia~V~Q~~~L---------f-~~TIr 477 (1091)
..+++||||||||||||+.+|.+.+.+. .|++...|. |+-... . ...+.+|++++|++-. . .-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999876 468888876 432111 1 1224589999999621 1 45888
Q ss_pred HHhccCCC--------CCCHHHHHHHHHHcccHH----H------HhhCCCCcccccccCCCCCChHHHHHHHHHHHhh-
Q 001371 478 DNIAYGKD--------DATTEEIRVATELANAAK----F------IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL- 538 (1091)
Q Consensus 478 eNI~~g~~--------~~~~~~i~~a~~~a~l~~----~------i~~lp~G~~T~vge~G~~LSGGQkQRialARAll- 538 (1091)
+||.++.. ....+++.++++.+++.- + |.++=+. ..........||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 88866531 134567788888887640 0 0100000 02234456789999999999999997
Q ss_pred ---cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEe
Q 001371 539 ---KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1091)
Q Consensus 539 ---~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~ 594 (1091)
++|+++||||||++||+.+.+.+.+.|+++.++.|+|+|||+.+.+..||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 68899999999999999999999999998878899999999999999999998774
No 407
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=5.6e-25 Score=232.67 Aligned_cols=184 Identities=22% Similarity=0.287 Sum_probs=138.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHh-hc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr-~~ 461 (1091)
.|+++|.- +|. +..+++++++ ++++|+||+||||||++++|. .++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 46777765 674 3468999987 899999999999999999997 33454432 234 57
Q ss_pred eeEEeccCccccc-cHHHHhccCCCCCCHHHH-----HH-HHH---HcccHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 001371 462 IGLVSQEPVLFTG-SIKDNIAYGKDDATTEEI-----RV-ATE---LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1091)
Q Consensus 462 ia~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~i-----~~-a~~---~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRi 531 (1091)
+++++|+..++.. |.++++.+.......+.+ .. ..+ ..+-...+..||++.++.++ .||+|||||+
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~----~lS~G~~~r~ 136 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS----NLSGGEKTLS 136 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh----hcCHHHHHHH
Confidence 9999999877664 778877655321111100 00 000 00111134567888887654 6999999999
Q ss_pred HHHHHhh----cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEe
Q 001371 532 AIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1091)
Q Consensus 532 alARAll----~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~ 594 (1091)
+||||++ ++|++++|||||++||+.+...+.+.++++.++.|+|+|||+.+..+.||+|++|.
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~ 203 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIY 203 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEE
Confidence 9999996 35899999999999999999999999999877889999999998888999999995
No 408
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=5.2e-25 Score=245.46 Aligned_cols=193 Identities=30% Similarity=0.418 Sum_probs=165.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-|.++||+|.|+++ ..+++++||-|..++.+|+|||+|+|||||++++.|...|+.|.|.-.-+. ++
T Consensus 389 vi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 58999999999854 379999999999999999999999999999999999999999999765432 35
Q ss_pred eEEec---cCccccccHHHHhccCCCC-CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 463 GLVSQ---EPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 463 a~V~Q---~~~Lf~~TIreNI~~g~~~-~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
++-.| +..-++.|.-||+.---++ -+.+++...+..++|..+.+.-|- .+||+|||.||+.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHh
Confidence 54444 3345677888887644443 567888999999999876665543 479999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEee
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive 600 (1091)
+.|.||+|||||++||.++-....++|.++ .-++|+|+|..-.|.+ |++|.+.+||.+..
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 999999999999999999999999999886 4589999999999976 99999999998865
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.91 E-value=7.4e-24 Score=263.57 Aligned_cols=102 Identities=31% Similarity=0.537 Sum_probs=92.6
Q ss_pred Cccc-ccccCCCCCChHHHHHHHHHHHhhcCC---CEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh
Q 001371 511 GIDT-LVGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR 585 (1091)
Q Consensus 511 G~~T-~vge~G~~LSGGQkQRialARAll~~~---~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~ 585 (1091)
|++. .++....+||||||||++|||||.++| +++||||||++||+++...+.+.|+++. +++|+|+|+|++..+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4443 367788899999999999999999999 9999999999999999999999998875 5789999999999999
Q ss_pred ccCeEEEE------eCCEEeeecChhHHhcCCC
Q 001371 586 NADMIAVI------HRGKIVEKGTHSKLVEDPE 612 (1091)
Q Consensus 586 ~aD~Iivl------~~G~Ive~Gt~~eL~~~~~ 612 (1091)
.||+|++| ++|+|++.|+++++.+.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99999999 7999999999999987633
No 410
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.91 E-value=5.1e-23 Score=224.76 Aligned_cols=300 Identities=16% Similarity=0.235 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHH
Q 001371 773 GSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAA 852 (1091)
Q Consensus 773 ~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~ 852 (1091)
.+.++.-+|++++..+..-.++.+-.++|+++....++|.-. ..+|..+.-+.+-++.+. .+.....++.-.++-++
T Consensus 271 gsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~--rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~ 347 (790)
T KOG0056|consen 271 GSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN--RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLG 347 (790)
T ss_pred cccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec--ccccceeehhccCcchhh-HHHHHHhhcccHHHHhh
Confidence 446777788998888999999999999999999999999984 558999988888887776 55555555555555554
Q ss_pred HHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHH
Q 001371 853 AGLIIAF-TASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKK 931 (1091)
Q Consensus 853 ~~~i~~~-~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~ 931 (1091)
.+++--+ -.+||+.++++.+.-+........--.+..+||.......+......+++-+..||+-|++|++-.++|.+.
T Consensus 348 va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreA 427 (790)
T KOG0056|consen 348 VAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREA 427 (790)
T ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHH
Confidence 4444333 258888877655544433322222223345566666666677778889999999999999999999999999
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh----hccCCcCHHHHHHHHHHHHHHHHHHHHHhccc----
Q 001371 932 CEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARL----VEDGKATFSDVFKVFFSLTMTAIGISQSSSFS---- 1003 (1091)
Q Consensus 932 l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~l----i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 1003 (1091)
++..++.-++.. .+..+....+ -.++++....|+.+ +..+..+.+|+...... .+.+.+..+++
T Consensus 428 il~Yqk~E~ks~-~sLnfLN~~Q---n~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TY----liqLy~PLN~FGT~Y 499 (790)
T KOG0056|consen 428 ILKYQKQEWKSL-ASLNFLNIVQ---NGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTY----LIQLYMPLNFFGTYY 499 (790)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHh---hhhhhhHHhhhhheeeeeeeeccccccceehHHHH----HHHHhCchHHHHHHH
Confidence 988887644422 2222222221 11222222222211 22333344443322222 22333333333
Q ss_pred ccHHHHHHHHHHHHHHHcCCCCCCC-CCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCC
Q 001371 1004 SDSNKAKSAAASIFAIIDRESKIDP-SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFH 1082 (1091)
Q Consensus 1004 ~~~~~~~~aa~~i~~~i~~~~~~~~-~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~ 1082 (1091)
...++...-.++++.++++|+++.. |...| ....+|.|+|+||+|.| .|..|||+||||+++||+++|||||||+
T Consensus 500 R~iQ~nfiDmEnmfdllkee~eVvd~P~a~p--l~~~~G~i~fsnvtF~Y--~p~k~vl~disF~v~pGktvAlVG~SGa 575 (790)
T KOG0056|consen 500 RSIQKNFIDMENMFDLLKEEPEVVDLPGAPP--LKVTQGKIEFSNVTFAY--DPGKPVLSDISFTVQPGKTVALVGPSGA 575 (790)
T ss_pred HHHHHhhhhHHHHHHHhhcCchhhcCCCCCC--ccccCCeEEEEEeEEec--CCCCceeecceEEecCCcEEEEECCCCC
Confidence 3455556667788888887776532 22211 22358999999999999 4566899999999999999999999999
Q ss_pred Ccccc
Q 001371 1083 SLKQL 1087 (1091)
Q Consensus 1083 ~~~~~ 1087 (1091)
|||++
T Consensus 576 GKSTi 580 (790)
T KOG0056|consen 576 GKSTI 580 (790)
T ss_pred chhHH
Confidence 99986
No 411
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.91 E-value=1.3e-23 Score=271.03 Aligned_cols=212 Identities=27% Similarity=0.386 Sum_probs=153.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHH---------HHhccCCCCCc--------EEEE
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS---------LIERFYDPQAG--------EVLI 445 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~---------ll~g~~~~~~G--------~I~i 445 (1091)
.++++|++. ..|+|+||+|++|++++|+|+||||||||++ +|.|...+..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 478888752 3699999999999999999999999999999 55554322111 2455
Q ss_pred CCccccCCC----h------HHHh---------hcee-----EEecc------------------C--------------
Q 001371 446 DGINLKEFQ----L------QWIR---------KKIG-----LVSQE------------------P-------------- 469 (1091)
Q Consensus 446 dg~~i~~~~----~------~~lr---------~~ia-----~V~Q~------------------~-------------- 469 (1091)
|-.++..-+ . +++| ++.+ +.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 554443211 1 1344 1111 22221 1
Q ss_pred ------cccc-ccHHHHhccCCCCC-----CHHHHHHHHHHcccHHHHhhCCCCcccc-cccCCCCCChHHHHHHHHHHH
Q 001371 470 ------VLFT-GSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARA 536 (1091)
Q Consensus 470 ------~Lf~-~TIreNI~~g~~~~-----~~~~i~~a~~~a~l~~~i~~lp~G~~T~-vge~G~~LSGGQkQRialARA 536 (1091)
..++ -||.||+.++..++ +.+++.+.++ .++.+ |++.. .+....+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 1233 38889988764321 1223333322 23333 56554 677888999999999999999
Q ss_pred hh---cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEEe------CCEEeeecChhH
Q 001371 537 IL---KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIH------RGKIVEKGTHSK 606 (1091)
Q Consensus 537 ll---~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~------~G~Ive~Gt~~e 606 (1091)
|+ ++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|+|++..++.||+|++|+ +|+++..|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 5999999999999999999999999998865 5789999999999999999999996 899999999999
Q ss_pred HhcC
Q 001371 607 LVED 610 (1091)
Q Consensus 607 L~~~ 610 (1091)
+...
T Consensus 904 l~~~ 907 (1809)
T PRK00635 904 LIHL 907 (1809)
T ss_pred HHhc
Confidence 9864
No 412
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=1.2e-24 Score=208.11 Aligned_cols=208 Identities=25% Similarity=0.408 Sum_probs=174.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
++++||+.+ .-|-.+|.++..||..=+|||+|||||||+..+.|+. |-+|+|.++|.|+......++-++=+
T Consensus 4 ~qln~v~~~-------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeecccccc-------ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 466776642 2366789999999999999999999999999999987 67999999999999999999999999
Q ss_pred EEeccC-ccccccHHHHhccCCCCCC-HHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc--
Q 001371 464 LVSQEP-VLFTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK-- 539 (1091)
Q Consensus 464 ~V~Q~~-~Lf~~TIreNI~~g~~~~~-~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~-- 539 (1091)
|.+|+. ..|..-|..-+.+..|+-+ .+++.++|.+-+ ++..+|..-..||||+.||+-||-.+++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~-----------l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALA-----------LDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhc-----------ccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998865 5788999999999888522 123444444443 4445566667899999999999998886
Q ss_pred -----CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCch-hhhccCeEEEEeCCEEeeecChhHHhcC
Q 001371 540 -----DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 540 -----~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls-~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
+.++||||||.+.||...+..+...|.+++ +|.|+|+..|.|. |+++||++..|..|++..+|.-+|.+..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 346999999999999998888887777765 6899999999995 7999999999999999999999999864
No 413
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=7.5e-24 Score=258.99 Aligned_cols=199 Identities=25% Similarity=0.428 Sum_probs=170.2
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC--CCCcEEEECCccccCCChHHHhhceeEEeccC-ccccc
Q 001371 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG 474 (1091)
Q Consensus 398 ~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~--~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~-~Lf~~ 474 (1091)
.+..|+||+=-++||.++|++|+||||||||++.|.|=.. ..+|+|+|||.+..+ +..++.+|||.|++ ++=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 4679999999999999999999999999999999998643 357899999998876 77889999999977 46567
Q ss_pred cHHHHhccCC----C-CCCH----HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC-CEE
Q 001371 475 SIKDNIAYGK----D-DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP-RIL 544 (1091)
Q Consensus 475 TIreNI~~g~----~-~~~~----~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~-~Il 544 (1091)
||||-+.|.. | +.++ +.++++++..++.+. -|..||.-|..||..||.|+.||=-|..|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998862 1 2222 346777777766654 356799999999999999999999999999 899
Q ss_pred EeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchh--hhccCeEEEEe-CCEEeeecChhH
Q 001371 545 LLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIH-RGKIVEKGTHSK 606 (1091)
Q Consensus 545 iLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~--i~~aD~Iivl~-~G~Ive~Gt~~e 606 (1091)
.||||||+||+.+...|.+.++++. .|+|+++.=|++|. .+..|+++.|+ +|+.|..|+..+
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999999999999998864 79999999999985 57899999995 789999998754
No 414
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.89 E-value=7.6e-23 Score=233.53 Aligned_cols=212 Identities=22% Similarity=0.382 Sum_probs=171.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChH-HHhhc
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ-WIRKK 461 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~-~lr~~ 461 (1091)
.++++|++.. ..++|+||++++||.++|.|-.|||+|=++.+|.|.-++.+|+|.+||.++.--++. ..+.-
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3667776542 257899999999999999999999999999999998889999999999988877654 78889
Q ss_pred eeEEeccC----ccccccHHHHhccCC-CCCCHH-HHHHHHHHcccHHHHhhCCC---CcccccccCCCCCChHHHHHHH
Q 001371 462 IGLVSQEP----VLFTGSIKDNIAYGK-DDATTE-EIRVATELANAAKFIDKLPQ---GIDTLVGEHGTQLSGGQKQRIA 532 (1091)
Q Consensus 462 ia~V~Q~~----~Lf~~TIreNI~~g~-~~~~~~-~i~~a~~~a~l~~~i~~lp~---G~~T~vge~G~~LSGGQkQRia 532 (1091)
|+|||-|- .+...+|++||.+.. ...... -+....+.....+++.+|.= +.+.++ .+||||-+|++.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKVv 411 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVV 411 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhHH
Confidence 99999864 345679999998762 111111 24444455555666776632 333444 479999999999
Q ss_pred HHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChh
Q 001371 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 533 lARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~ 605 (1091)
|||.|..+|+||||||||-++|.-+.+.|.+.|+++. +|+++|+||-.+..+. .||||+||.+|+|+..=+.+
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999999999875 6899999999987765 79999999999999743433
No 415
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=1.4e-23 Score=228.51 Aligned_cols=182 Identities=18% Similarity=0.174 Sum_probs=135.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcc-c------cCCChHHHhhceeEEeccC--ccccccHHHHhc--
Q 001371 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-L------KEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIA-- 481 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~-i------~~~~~~~lr~~ia~V~Q~~--~Lf~~TIreNI~-- 481 (1091)
..++|+||+|||||||+.+|.+...+..|++..++.+ + ...+.....-.+.+..|++ .++..+++++-.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998877887654421 1 1111122333455555543 345555555421
Q ss_pred -cCCCCCCHHHHHHHHHHcccHHHHhh--CCCCcccccccCC---------CCCChHHHHHHHHHHHhhc----CCCEEE
Q 001371 482 -YGKDDATTEEIRVATELANAAKFIDK--LPQGIDTLVGEHG---------TQLSGGQKQRIAIARAILK----DPRILL 545 (1091)
Q Consensus 482 -~g~~~~~~~~i~~a~~~a~l~~~i~~--lp~G~~T~vge~G---------~~LSGGQkQRialARAll~----~~~Ili 545 (1091)
+.....+.+++.+.++.++++.+... +|+|.-+.+.+.. .+||||||||++||||+.. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 12234678889999999998644222 3455555554433 6899999999999999975 489999
Q ss_pred eeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEccCchhhhccCeEEEEe
Q 001371 546 LDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVIH 594 (1091)
Q Consensus 546 LDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~aD~Iivl~ 594 (1091)
|||||++||+.+...+.+.|+++.+ +.|+|+|||+.+.+..||+|++|.
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 9999999999999999999988765 789999999999999999999995
No 416
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=2.2e-22 Score=250.05 Aligned_cols=97 Identities=34% Similarity=0.571 Sum_probs=88.5
Q ss_pred Cccc-ccccCCCCCChHHHHHHHHHHHhhc---CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh
Q 001371 511 GIDT-LVGEHGTQLSGGQKQRIAIARAILK---DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR 585 (1091)
Q Consensus 511 G~~T-~vge~G~~LSGGQkQRialARAll~---~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~ 585 (1091)
|++. .++....+||||||||++|||||.+ +|++|||||||++||+.+.+.+.+.|+++. +++|+|+|+|++..++
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4543 3688889999999999999999997 599999999999999999999999998875 5789999999999999
Q ss_pred ccCeEEEE------eCCEEeeecChhHH
Q 001371 586 NADMIAVI------HRGKIVEKGTHSKL 607 (1091)
Q Consensus 586 ~aD~Iivl------~~G~Ive~Gt~~eL 607 (1091)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999886
No 417
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=1.5e-21 Score=238.98 Aligned_cols=206 Identities=25% Similarity=0.398 Sum_probs=170.2
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC---CCcEEEECCccccCCChHHHhhceeEEeccCcccc-
Q 001371 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP---QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT- 473 (1091)
Q Consensus 398 ~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~---~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~- 473 (1091)
...+|+|++.-++||+.+.+.||.|||||||+++|.|..+- ..|+|..||++.++... ++.++|++|+.+.|.
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPE 203 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccce
Confidence 34699999999999999999999999999999999998764 35699999999999887 788999999988776
Q ss_pred ccHHHHhccCC----C-----CCCHHHHHHHHHHcccHHHHhhCCCCcccccccCC-CCCChHHHHHHHHHHHhhcCCCE
Q 001371 474 GSIKDNIAYGK----D-----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG-TQLSGGQKQRIAIARAILKDPRI 543 (1091)
Q Consensus 474 ~TIreNI~~g~----~-----~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G-~~LSGGQkQRialARAll~~~~I 543 (1091)
-||||-|.|.. | +.++++...+ ...-.=-+-.|....||.||.+. ...|||||.|+++|-++..++++
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~--~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~ 281 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAA--MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASI 281 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHH--HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcce
Confidence 69999998852 1 2333333321 11111112356678999999765 57999999999999999999999
Q ss_pred EEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCch--hhhccCeEEEEeCCEEeeecChhHHh
Q 001371 544 LLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLS--TVRNADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 544 liLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls--~i~~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
+..||+|-+||+.|.-+|.++|+++. -+.|.++.=|+.+ +..--|+|++|.+|+++.+|+.++.+
T Consensus 282 ~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 282 LFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred eeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 99999999999999999999998864 3567777778764 57789999999999999999999886
No 418
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.87 E-value=2.8e-21 Score=215.53 Aligned_cols=216 Identities=22% Similarity=0.397 Sum_probs=176.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccc-cCCChHHHhh-
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL-KEFQLQWIRK- 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i-~~~~~~~lr~- 460 (1091)
-++++|++..=+ + ..+.+++|||++++||.++|.|-.|-|-+-|+.+|.|+..|.+|+|.++|+|+ ...+...+|+
T Consensus 257 vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 588999998643 2 35789999999999999999999999999999999999999999999999997 6778887775
Q ss_pred ceeEEeccC----ccccccHHHHhccCCCC---------CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHH
Q 001371 461 KIGLVSQEP----VLFTGSIKDNIAYGKDD---------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1091)
Q Consensus 461 ~ia~V~Q~~----~Lf~~TIreNI~~g~~~---------~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQ 527 (1091)
.+||||.|. -...-|+.||+.++.-+ .+..++.+.++.- -+..+--+.|-++++ .+||||+
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~l--i~~fdVr~~~~~~~a----~~LSGGN 408 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAREL--IEEFDVRAPSPDAPA----RSLSGGN 408 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHH--HHHcCccCCCCCcch----hhcCCcc
Confidence 599999987 36678999999887532 2234444433321 111122244555555 4799999
Q ss_pred HHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCeEEEEeCCEEeeecChh
Q 001371 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 528 kQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~ 605 (1091)
.||+-+||-+.++|++||...||-+||..+.+.|.+.|.+.. +|+.+++|+-.|..+. -||+|.||.+|+|+...+.+
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 999999999999999999999999999999999988887654 6899999999998865 59999999999999877665
Q ss_pred H
Q 001371 606 K 606 (1091)
Q Consensus 606 e 606 (1091)
+
T Consensus 489 ~ 489 (501)
T COG3845 489 E 489 (501)
T ss_pred c
Confidence 5
No 419
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.86 E-value=5.6e-19 Score=194.86 Aligned_cols=261 Identities=22% Similarity=0.385 Sum_probs=208.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 723 AGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWAL--IYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMC 800 (1091)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~ 800 (1091)
+++++.++.++..+...++++.+.+........ .....+.. .++++.++...+.....+...+.+.+..+++|+++
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD--NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRL 80 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666677777777764332211 11112222 22233333444444445556789999999999999
Q ss_pred HHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001371 801 FEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSG 880 (1091)
Q Consensus 801 ~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~ 880 (1091)
++++++.|.+||| .+++|+++||+++|++.+++.+...+..++..+..+++.+++++..+|+++++++++.|+.++..
T Consensus 81 ~~~~~~~~~~~~~--~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 158 (275)
T PF00664_consen 81 FEKLLRLPYSYFD--KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLIS 158 (275)
T ss_dssp HHHHHHSHHHHHH--HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--hhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhh
Confidence 9999999999999 68899999999999999999999999999999999999999999999999999998888888887
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001371 881 YTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAF 960 (1091)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~ 960 (1091)
....+..++..+..+....+....+.|.++|+++||+|+.|+++.++|.+..+...+...+.....+...++...+....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (275)
T PF00664_consen 159 FIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLS 238 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777788888999999999999999999999999999999998888888888888888888888887
Q ss_pred HHHHHHHhhHh-hccCCcCHHHHHHHHH
Q 001371 961 YAASFYAGARL-VEDGKATFSDVFKVFF 987 (1091)
Q Consensus 961 ~a~~~~~g~~l-i~~g~~~~~~~~~~~~ 987 (1091)
..+.+++|..+ +..|..+.++++....
T Consensus 239 ~~~~~~~g~~~~~~~g~~s~g~~~~~~~ 266 (275)
T PF00664_consen 239 IVLILIFGAYLSVINGQISIGTLVAFLS 266 (275)
T ss_dssp HHHHHHHHHHH-HCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHH
Confidence 88899999999 8999988876665443
No 420
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.5e-21 Score=208.65 Aligned_cols=192 Identities=30% Similarity=0.444 Sum_probs=145.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
-+-+.||+|.||+ .+|.+++++|-|.--..+|||||+|.|||||++||.|.++|++|+..-+- |-+|
T Consensus 586 vLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 4678999999986 46899999999999999999999999999999999999999999876543 4478
Q ss_pred eEEeccCc-cc--cccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 463 GLVSQEPV-LF--TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 463 a~V~Q~~~-Lf--~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
|+..|..- -. ..|--|-+.-+. +.+.++-+.++-..+|..- -.|. +-..||||||.|+++|--.++
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLal~ 721 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELALG 721 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHhcC
Confidence 88888642 11 234445443222 2344444444444443221 1222 235799999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccC-eEEEEeCCEEee
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNAD-MIAVIHRGKIVE 600 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD-~Iivl~~G~Ive 600 (1091)
.||||||||||.+||.++-..+-++|.+. +-.||+|+|.-..|..-| ..+|+++-.|-|
T Consensus 722 ~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 722 GPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDE 781 (807)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhh
Confidence 99999999999999999999999999886 457999999988876644 345555554443
No 421
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.85 E-value=3.7e-21 Score=214.94 Aligned_cols=213 Identities=24% Similarity=0.369 Sum_probs=145.9
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEEC--CccccCC-----
Q 001371 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID--GINLKEF----- 453 (1091)
Q Consensus 381 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~id--g~~i~~~----- 453 (1091)
...|.++|++++|++ .++++|..|++++|++++|+|++||||||+++.|.|--.|..-++.+- ..++..-
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av 149 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAV 149 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHH
Confidence 346999999999973 579999999999999999999999999999999998877765544321 1111110
Q ss_pred -----ChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHH---HHHHHHHcccHH-------HHhhCCCCcc-cccc
Q 001371 454 -----QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE---IRVATELANAAK-------FIDKLPQGID-TLVG 517 (1091)
Q Consensus 454 -----~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~---i~~a~~~a~l~~-------~i~~lp~G~~-T~vg 517 (1091)
...+.|.++.|-. |++.-..++.+.++ +++-+...+.+. -+..| |.. ...-
T Consensus 150 ~~v~~~~~~e~~rle~~~-----------E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl--gf~~~m~~ 216 (614)
T KOG0927|consen 150 QAVVMETDHERKRLEYLA-----------EDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL--GFLSEMQD 216 (614)
T ss_pred HHHhhhhHHHHHHHHHHH-----------HHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc--CCCHhHHH
Confidence 1111222222211 11111101111111 111111111111 01111 222 2223
Q ss_pred cCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCC
Q 001371 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1091)
Q Consensus 518 e~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G 596 (1091)
..-.+||||||-|++|||||+.+|++|+|||||.+||.++-.-+.+.|.+.... |.++++|.-.++.. |.+|+-|+++
T Consensus 217 k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~k 295 (614)
T KOG0927|consen 217 KKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNK 295 (614)
T ss_pred HHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheeccc
Confidence 345789999999999999999999999999999999999999999999875322 89999999999987 9999999999
Q ss_pred E-EeeecChhHHhcC
Q 001371 597 K-IVEKGTHSKLVED 610 (1091)
Q Consensus 597 ~-Ive~Gt~~eL~~~ 610 (1091)
+ +...|+|+..+..
T Consensus 296 kl~~y~Gnydqy~~t 310 (614)
T KOG0927|consen 296 KLIYYEGNYDQYVKT 310 (614)
T ss_pred ceeeecCCHHHHhhH
Confidence 9 7789999998764
No 422
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.8e-21 Score=212.85 Aligned_cols=195 Identities=27% Similarity=0.362 Sum_probs=163.2
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhc
Q 001371 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1091)
Q Consensus 382 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ 461 (1091)
..+++.+|+|.|+.. +.+.++++++.+..-+++++||+.|+||||+++++.+...|..|.+.+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 468999999999743 22789999999999999999999999999999999999999999999987 778
Q ss_pred eeEEeccCccc-cccH--HHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh
Q 001371 462 IGLVSQEPVLF-TGSI--KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1091)
Q Consensus 462 ia~V~Q~~~Lf-~~TI--reNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll 538 (1091)
|+|-.|.-.=| +-.+ -|-..=..|.-++|++++.|...|+...+..-| -..||||||-|+++|-...
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhc
Confidence 99999965422 2111 111111134558999999999887776664322 1469999999999999999
Q ss_pred cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEee
Q 001371 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1091)
Q Consensus 539 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive 600 (1091)
.+|.+|+|||||..||.++-..+-++|+.+ +--||+|||..+++.. |+.+.+.+||+|..
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999886 3479999999999986 99999999999976
No 423
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=6e-21 Score=199.91 Aligned_cols=172 Identities=19% Similarity=0.206 Sum_probs=117.6
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC-hHHHhhceeEEeccCccccccHHHHh
Q 001371 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1091)
Q Consensus 402 L~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~-~~~lr~~ia~V~Q~~~Lf~~TIreNI 480 (1091)
++++++++.+| +.+|+||+|||||||+.+|.-.+..... ....|..+.++- ...-...|.++.|..-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 35677777777 7899999999999999998744332211 111122111110 0111345778888765554 2
Q ss_pred ccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHh----hcCCCEEEeeCCCCCCCHH
Q 001371 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI----LKDPRILLLDEATSALDAE 556 (1091)
Q Consensus 481 ~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAl----l~~~~IliLDE~tSaLD~~ 556 (1091)
+ ..+.+ .+.+.++++. .+..+ +...+||||||||++||||+ +.+|+++||||||++||..
T Consensus 84 ----~-~~~~~------~~~~~~~l~~-~~~~~----~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ----P-LCVLS------QDMARSFLTS-NKAAV----RDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----c-CCHHH------HHHHHHHhcc-ccccC----CcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 2 11111 1122334433 22223 34458999999999999999 6899999999999999999
Q ss_pred hHHHHHHHHHHHcC----CCeEEEEccCchhhhccCeEEEEeCCE
Q 001371 557 SEKVVQEALDRIMV----NRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1091)
Q Consensus 557 te~~i~~~l~~~~~----~~T~I~ItHrls~i~~aD~Iivl~~G~ 597 (1091)
+...+.+.|.+..+ ++|+|++||++..+...|+|-||..|+
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999998887643 258899999999999999999998643
No 424
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.84 E-value=1.6e-20 Score=192.82 Aligned_cols=85 Identities=24% Similarity=0.299 Sum_probs=78.8
Q ss_pred HhhCCCCcccccccCCCCCChHHHHHHHHHHHhh----cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEcc
Q 001371 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAH 579 (1091)
Q Consensus 505 i~~lp~G~~T~vge~G~~LSGGQkQRialARAll----~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItH 579 (1091)
+..+|+|..|++ ||||||||++||||+. ++|+++|||||+++||+...+.+.+.+.++.+ ++|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 678999999999 9999999999999984 79999999999999999999999999988754 489999999
Q ss_pred CchhhhccCeEEEEeC
Q 001371 580 RLSTVRNADMIAVIHR 595 (1091)
Q Consensus 580 rls~i~~aD~Iivl~~ 595 (1091)
+.+.+..||+++++++
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999975
No 425
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.83 E-value=2.6e-20 Score=203.52 Aligned_cols=180 Identities=24% Similarity=0.467 Sum_probs=138.6
Q ss_pred eEEEECCCCCCCccccceeEEee-----CCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhce
Q 001371 388 DVYFSYPARPNEQIFSGFSISIS-----SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1091)
Q Consensus 388 ~vsf~Y~~~~~~~vL~~isl~i~-----~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~i 462 (1091)
+.-++|++ -...+.+..|++. .||.++++||+|-||||++++|.|..+|++|. ..++ +|
T Consensus 340 ~~lv~y~~--~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~v 403 (591)
T COG1245 340 DTLVEYPD--LKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KV 403 (591)
T ss_pred ceeeecch--heeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eE
Confidence 34455653 2234566777664 57889999999999999999999999999998 2222 69
Q ss_pred eEEeccCc-cccccHHHHhccCCCC-CCHHHHH-HHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc
Q 001371 463 GLVSQEPV-LFTGSIKDNIAYGKDD-ATTEEIR-VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1091)
Q Consensus 463 a~V~Q~~~-Lf~~TIreNI~~g~~~-~~~~~i~-~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~ 539 (1091)
+|=||--. -|+|||++=+.--.+. +....++ ++++--++++.++ .+| .+||||+.||+|||-||.+
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e-------~~v----~~LSGGELQRvaIaa~L~r 472 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLE-------RPV----DELSGGELQRVAIAAALSR 472 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHh-------ccc----ccCCchhHHHHHHHHHhcc
Confidence 99999542 4899999977643332 2333332 3444445544432 233 4699999999999999999
Q ss_pred CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEe
Q 001371 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIH 594 (1091)
Q Consensus 540 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~ 594 (1091)
++|+++||||.+.||.+..-.+-++|++.. .++|.++|-|.+-.+.. +|+++|++
T Consensus 473 eADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 473 EADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999999999999999998888888998865 56899999999998876 99999996
No 426
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7.7e-19 Score=191.10 Aligned_cols=302 Identities=18% Similarity=0.195 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-H
Q 001371 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-F 859 (1091)
Q Consensus 781 ~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~~~~i~~-~ 859 (1091)
|..+|...+..+.+.+-.+.|.+++...+.|.-+.. +|-+..-..+-..-|+..+-..+...+-.++-+...+++. .
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~--TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~ 79 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERR--TGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWR 79 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcc--cCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 345677788889999999999999999999997433 5555544444555556556555555555555444333333 3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHHHHHHHHHhhhhHHhh
Q 001371 860 TASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTG 939 (1091)
Q Consensus 860 ~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f~~~~~~~l~~~~~~~ 939 (1091)
..+||++.+.++++.+.+.+...-.--+-..||..+.....+.....++|-+..|++-|+.|+++.++|...++...+..
T Consensus 80 ~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~ 159 (497)
T COG5265 80 VYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAA 159 (497)
T ss_pred hcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHH
Confidence 46898888777777776666555555566777888888888888899999999999999999999999999988888765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Q 001371 940 IRQGMVSGGGFGASFFLLFAFYAA-SFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFA 1018 (1091)
Q Consensus 940 ~r~~~~~~~~~g~~~~~~~~~~a~-~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~ 1018 (1091)
.+- ..+..++.+.+...+...-. ....+...+..|.++.+|+...-..+..-...+........+..++..-.++++.
T Consensus 160 ~k~-~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfd 238 (497)
T COG5265 160 IKV-HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFD 238 (497)
T ss_pred HHH-HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHH
Confidence 443 33334444445444443222 2334455567788887776543222221122222222223456666666667777
Q ss_pred HHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCcccc
Q 001371 1019 IIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQL 1087 (1091)
Q Consensus 1019 ~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~ 1087 (1091)
+.+.+.+.......++-.+-..|.|.|+||+|.|. |..|+|+|+||+|++|+++|+|||||+||+++
T Consensus 239 Ll~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI 305 (497)
T COG5265 239 LLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTI 305 (497)
T ss_pred hhccchhhccCCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHH
Confidence 77655443222111111113479999999999994 44579999999999999999999999999986
No 427
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.1e-20 Score=209.99 Aligned_cols=200 Identities=27% Similarity=0.354 Sum_probs=145.7
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCcc--ccCCChHHH
Q 001371 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN--LKEFQLQWI 458 (1091)
Q Consensus 381 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~--i~~~~~~~l 458 (1091)
..+|...|.+.+|.+ +..|++-++++..|..+++|||+|+|||||+++|.. |.|.+-.++ ++..+..
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~-- 146 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTE-- 146 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchH--
Confidence 357999999999963 579999999999999999999999999999999997 443322211 1111111
Q ss_pred hhceeEEeccCccccccHHHHhccCCCC----CCHHHHHH-HHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDD----ATTEEIRV-ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 459 r~~ia~V~Q~~~Lf~~TIreNI~~g~~~----~~~~~i~~-a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
..| ..+-.+|-|.-+..-.+. .+.+++.. +++-.+..+..+..|- ..||||=|-|+||
T Consensus 147 ------~~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaL 209 (582)
T KOG0062|consen 147 ------ALQ-SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLAL 209 (582)
T ss_pred ------HHh-hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHH
Confidence 111 112233333333221110 13445554 6777777777776663 4799999999999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCeEEEEeCCEEe-eecChhHHhcC
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLVED 610 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv-e~Gt~~eL~~~ 610 (1091)
||||+++||||||||||..||...-.-+.+.|..+ ..|+|+|+|.-+++.. |.-|+.+++=++- ..|++++..+.
T Consensus 210 ARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 210 ARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 99999999999999999999999999888888775 3899999999999976 8889888876653 35676666544
No 428
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.82 E-value=1.1e-20 Score=202.92 Aligned_cols=200 Identities=19% Similarity=0.276 Sum_probs=141.1
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEE--EECCccccCCChHHHhhce--eEEeccCccccccHHHHhc
Q 001371 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV--LIDGINLKEFQLQWIRKKI--GLVSQEPVLFTGSIKDNIA 481 (1091)
Q Consensus 406 sl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I--~idg~~i~~~~~~~lr~~i--a~V~Q~~~Lf~~TIreNI~ 481 (1091)
=+.+.+||+++|+||+|+|||||++.+.+.++...+++ .+-...-+..+..++.+.+ .+|-.+ ++.+-...+.
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~---~~~~~~~~~~ 86 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAST---FDEPPERHVQ 86 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEec---CCCCHHHHHH
Confidence 35788999999999999999999999999988764432 3222222224444444443 011000 0001111110
Q ss_pred cCCCCCCHHHHHHHHH--H-----cccHHHHhhCCCCcccccccCCCCCChHH--------HHHHHHHHHhhcCCCEEEe
Q 001371 482 YGKDDATTEEIRVATE--L-----ANAAKFIDKLPQGIDTLVGEHGTQLSGGQ--------KQRIAIARAILKDPRILLL 546 (1091)
Q Consensus 482 ~g~~~~~~~~i~~a~~--~-----a~l~~~i~~lp~G~~T~vge~G~~LSGGQ--------kQRialARAll~~~~IliL 546 (1091)
.. +.-...|.. . .-+-|.+.++|+++++.+|+.|.++|||| |||+++||+++++++|.+|
T Consensus 87 ~~-----~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l 161 (249)
T cd01128 87 VA-----EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII 161 (249)
T ss_pred HH-----HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe
Confidence 00 000111111 1 11346789999999999999999999999 9999999999999999999
Q ss_pred eCCCCCCCHHhHHH-HHHHHHHHc-CCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHHhcCCCchhHHHHHHHh
Q 001371 547 DEATSALDAESEKV-VQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1091)
Q Consensus 547 DE~tSaLD~~te~~-i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~~~y~~l~~~~~ 623 (1091)
||+++|+.+|.. ++ +..+. .++|.|+++||+++..++|.|.||+.|++ |++++.. ++.|+.+++.+.
T Consensus 162 --~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~-~~~~~~~~~~r~ 230 (249)
T cd01128 162 --ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLD-PEELQRMWLLRR 230 (249)
T ss_pred --eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCC-HHHHHHHHHHHH
Confidence 999999876653 43 34433 57999999999999999999999999998 7899876 678888876554
No 429
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.4e-16 Score=169.72 Aligned_cols=314 Identities=16% Similarity=0.133 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHH
Q 001371 763 WALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALA 842 (1091)
Q Consensus 763 ~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~ 842 (1091)
++..|.++.....+...+......++|.+...++|.+..++++.+|+.-|+ .-..|||+.++++|++.|. .--..+.
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~IS-f~~s~lp 126 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNIS-FAFSRLP 126 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhccccccee-ehHhhhH
Confidence 445566666666666777778889999999999999999999999999999 4568999999999999998 3336667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhh--cc
Q 001371 843 RIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT-QMKFMKGFSADAKMKYEEASQVANDAVGSIRTVAS--FC 919 (1091)
Q Consensus 843 ~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra--~~ 919 (1091)
.+.|.....+++++-.++.+|++.+++.+.+.+.++..++ .++.++..+ ..|.....--.+++..++|-+-.+. =+
T Consensus 127 ~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~-aare~ed~Lq~~y~~il~G~KEL~l~r~R 205 (546)
T COG4615 127 ELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMA-AARETEDKLQNDYQTILEGRKELTLNRER 205 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhcchhhheechHH
Confidence 7888888888888888888888766665555555554433 333333222 2333334445678899999884443 33
Q ss_pred chHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHH
Q 001371 920 AEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQS 999 (1091)
Q Consensus 920 ~e~~f~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~ 999 (1091)
++..+-+.|........+...+-..+.....-.++.+++....+.||..... +..+..+..+..+.+++-...+-+.
T Consensus 206 ~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~ 282 (546)
T COG4615 206 AEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSA 282 (546)
T ss_pred HHHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHH
Confidence 3333333333332222222333333333444566777778888888886543 2222222222223333434455555
Q ss_pred hcccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcC
Q 001371 1000 SSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNF 1079 (1091)
Q Consensus 1000 ~~~~~~~~~~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~ 1079 (1091)
....|.+..+..|..++......++..+-+.+ ...|.+ -.||++||.|+|++.. --+.-||++|+.||.|=|+|.
T Consensus 283 vgilP~l~~AqvA~~kiakle~~~~~a~~~~~--q~~p~~-~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~ 357 (546)
T COG4615 283 VGILPTLLTAQVAFNKIAKLELAPYKADFPRP--QAFPDW-KTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGG 357 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHhhcCCccccCCCC--CcCCcc-cceeeeeeeeccCccc--ceecceeeEEecCcEEEEECC
Confidence 66678999999999988776543222221111 112223 3699999999997431 357889999999999999999
Q ss_pred CCCCccccc
Q 001371 1080 QFHSLKQLT 1088 (1091)
Q Consensus 1080 SG~~~~~~~ 1088 (1091)
.||||||+.
T Consensus 358 NGsGKST~~ 366 (546)
T COG4615 358 NGSGKSTLA 366 (546)
T ss_pred CCCcHHHHH
Confidence 999999863
No 430
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.78 E-value=3.8e-16 Score=174.18 Aligned_cols=301 Identities=15% Similarity=0.089 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHhHHhhhHHHHHHHhhhhHHHHHHHHHHHH
Q 001371 773 GSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAA 852 (1091)
Q Consensus 773 ~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~tp~GrilnRfs~D~~~id~~l~~~l~~~~~~~~~~~ 852 (1091)
+..++-.+|...+...+++.-.+|+...|.+.+++|..-=- .|+=+.-+ +|.+++...+...-...+.-.=..-
T Consensus 75 ~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~-----~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P 148 (580)
T COG4618 75 FQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRG-----SGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMP 148 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcC-----CCccccch-hhHHHHHHHHcCCCcchhcCCchHH
Confidence 34455667999999999999999999999999988876432 33222222 5889999888764333332222333
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHccchHhhhccchHHH----HHHH
Q 001371 853 AGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKV----MQLY 928 (1091)
Q Consensus 853 ~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gl~TIra~~~e~~f----~~~~ 928 (1091)
.=+++++.+.||+.+..++...+++...++..+..++.-+........+..+...+..|..+|+|.|+..+. .+.+
T Consensus 149 ~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~ 228 (580)
T COG4618 149 LYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFN 228 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHH
Confidence 345667788899998888888888888888877766555555555666677888999999999999996654 4455
Q ss_pred HHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Q 001371 929 KKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNK 1008 (1091)
Q Consensus 929 ~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1091)
.+.++.+...+-+-..+.+. +=.+=.++.+...-.|.+++..|+++.+-++..-+.+.=...-+.+....-..+..
T Consensus 229 ~~~L~~~~~asd~~~~~~~~----Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~ 304 (580)
T COG4618 229 AAYLSAQERASDRNGAFGAL----SRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVA 304 (580)
T ss_pred HHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHH
Confidence 55566666665555555444 44444445555666788999999998774443222111111112222222233444
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCcccccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1009 AKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1009 ~~~aa~~i~~~i~~~~~~~~~~~~~~~~~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
+..+-.++.+.+...+..++. -+.|..+|.+..+++.+.=|+. +.|+|+|+||.++|||.+|+|||||||||+|.
T Consensus 305 Ar~s~~Rl~~lL~~~p~~~~~----m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLa 379 (580)
T COG4618 305 ARQSYKRLNELLAELPAAAER----MPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLA 379 (580)
T ss_pred HHHHHHHHHHHHHhCccccCC----CCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHH
Confidence 555666777776655443322 2234458999999999966544 45799999999999999999999999999985
No 431
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.78 E-value=2.5e-18 Score=169.33 Aligned_cols=210 Identities=25% Similarity=0.361 Sum_probs=158.4
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccC-CCh----
Q 001371 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE-FQL---- 455 (1091)
Q Consensus 381 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~-~~~---- 455 (1091)
+..|++.+..|+|+.. .|++-|+|+++|+|..+.+||.+|||||||+++|.|-.-...|.|.+.|.+--. -.+
T Consensus 11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 4579999999999853 489999999999999999999999999999999999888888999999975321 111
Q ss_pred ------HHHhhceeEEeccCccccc-cHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHH
Q 001371 456 ------QWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1091)
Q Consensus 456 ------~~lr~~ia~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQk 528 (1091)
.+|++..++-- +..|.-+ ++ +-+.||-...+.++-++.++. +|-.+.=|-..+|-|||
T Consensus 89 dl~YLGgeW~~~~~~ag-evplq~D~sa-e~mifgV~g~dp~Rre~LI~i-------------LDIdl~WRmHkvSDGqr 153 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAG-EVPLQGDISA-EHMIFGVGGDDPERREKLIDI-------------LDIDLRWRMHKVSDGQR 153 (291)
T ss_pred ceeEecccccccccccc-cccccccccH-HHHHhhccCCChhHhhhhhhh-------------eeccceEEEeeccccch
Confidence 23444444444 2222222 33 333445433333333222222 23344445578999999
Q ss_pred HHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChh
Q 001371 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1091)
Q Consensus 529 QRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~ 605 (1091)
.|+.|+-.|++.=++|+|||.|--||......+.+-+++.. ++.|++..||=..-+.. +.+++.|.+|+++..-+|+
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 99999999999999999999999999999998888887654 57899999999887765 8999999999999865555
Q ss_pred HH
Q 001371 606 KL 607 (1091)
Q Consensus 606 eL 607 (1091)
+.
T Consensus 234 ~i 235 (291)
T KOG2355|consen 234 KI 235 (291)
T ss_pred hh
Confidence 44
No 432
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=9.8e-19 Score=193.57 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=70.5
Q ss_pred CCChHHHHHHHHHHHhhc----CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCE
Q 001371 522 QLSGGQKQRIAIARAILK----DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1091)
Q Consensus 522 ~LSGGQkQRialARAll~----~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~ 597 (1091)
.||||||||++|||+++. +|+++||||||++||+.+...+.+.+++..+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999998878899999999999889999999998874
No 433
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=1.3e-18 Score=171.44 Aligned_cols=211 Identities=26% Similarity=0.362 Sum_probs=167.3
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC----CCCcEEEECCccccCCChHHHhh----ceeEEeccCc
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGINLKEFQLQWIRK----KIGLVSQEPV 470 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~----~~~G~I~idg~~i~~~~~~~lr~----~ia~V~Q~~~ 470 (1091)
..+.+++|++.+.||.-++||.||||||-+.+.|+|... .+.-+..+|++|+-.++++.-|+ .|++++|+|.
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 457899999999999999999999999999999999864 34566778999999999988875 5789999996
Q ss_pred cccc---c----HHHHhccCCC--------CCCHHHHHHHHHHcccHH--HHhhCCCCcccccccCCCCCChHHHHHHHH
Q 001371 471 LFTG---S----IKDNIAYGKD--------DATTEEIRVATELANAAK--FIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1091)
Q Consensus 471 Lf~~---T----IreNI~~g~~--------~~~~~~i~~a~~~a~l~~--~i~~lp~G~~T~vge~G~~LSGGQkQRial 533 (1091)
-.-+ + +-+||-+..- .-...+-.+.+..+|+.| +|++ .|-. .|--|+-|++-|
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP~-------ElTeGE~QKVMI 169 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYPY-------ELTEGECQKVMI 169 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCcc-------hhccCcceeeee
Confidence 4322 2 3456632110 122345566778888744 4442 2323 355577788999
Q ss_pred HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCeEEEEeCCEEeeecChhHHhcC
Q 001371 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 534 ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 610 (1091)
|-|+..+|++||-||||.++|+.|...|...+.++- ++.|+++++|.+.++.. ||+|-||-=|+-+|.+.-++|++.
T Consensus 170 A~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~ 249 (330)
T COG4170 170 AIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTM 249 (330)
T ss_pred ehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcC
Confidence 999999999999999999999999999998887654 46788899999999865 999999999999999999999998
Q ss_pred CCchhHHHH
Q 001371 611 PEGAYSQLI 619 (1091)
Q Consensus 611 ~~~~y~~l~ 619 (1091)
+.-.|.+-+
T Consensus 250 PhHPYTqAL 258 (330)
T COG4170 250 PHHPYTQAL 258 (330)
T ss_pred CCCchHHHH
Confidence 766676543
No 434
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.77 E-value=1.8e-18 Score=183.11 Aligned_cols=180 Identities=14% Similarity=0.177 Sum_probs=116.6
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCcc---cccc----
Q 001371 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGS---- 475 (1091)
Q Consensus 403 ~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~L---f~~T---- 475 (1091)
+++.++..+| +.+|+||+|||||||+.+|.-..-...... ... -..+++ +..=.++.++ |+..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~---i~~g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEF---VKRGCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHH---hhCCCCcEEEEEEEEeCCCcc
Confidence 4455555554 779999999999999998865442111100 000 011111 1111111111 1111
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHH----hhcCCCEEEeeCCCC
Q 001371 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA----ILKDPRILLLDEATS 551 (1091)
Q Consensus 476 IreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARA----ll~~~~IliLDE~tS 551 (1091)
..+|+.+- .+.+.+.+++..... +.+..+|.+.+.. ..+...||||||||+.+|++ ++.+|+++|+||||+
T Consensus 85 ~~~n~~~~---~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF---LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE---EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 33444422 345666676666554 6667788776543 45677999999999887755 458999999999999
Q ss_pred CCCHHhHHHHHHHHHHHcC--C-CeEEEEccCchhh-hccC--eEEEEeCCE
Q 001371 552 ALDAESEKVVQEALDRIMV--N-RTTVIVAHRLSTV-RNAD--MIAVIHRGK 597 (1091)
Q Consensus 552 aLD~~te~~i~~~l~~~~~--~-~T~I~ItHrls~i-~~aD--~Iivl~~G~ 597 (1091)
+||+.+.+.+.+.|.+..+ + .|+|+|||++..+ ..|| +|++|++|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999988754 3 4799999998554 4565 778888775
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=5.3e-18 Score=197.91 Aligned_cols=105 Identities=30% Similarity=0.553 Sum_probs=92.6
Q ss_pred Cccc-ccccCCCCCChHHHHHHHHHHHhhcCC---CEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhh
Q 001371 511 GIDT-LVGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR 585 (1091)
Q Consensus 511 G~~T-~vge~G~~LSGGQkQRialARAll~~~---~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~ 585 (1091)
|+.. .+|..-.+||||+.|||-||.-|.+++ -+|||||||.+|-.+--+++.+.|.++. +|.|||+|-|.|..|+
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk 889 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK 889 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence 4443 578999999999999999999999988 8999999999999988888888887765 7899999999999999
Q ss_pred ccCeEEEE------eCCEEeeecChhHHhcCCCchhH
Q 001371 586 NADMIAVI------HRGKIVEKGTHSKLVEDPEGAYS 616 (1091)
Q Consensus 586 ~aD~Iivl------~~G~Ive~Gt~~eL~~~~~~~y~ 616 (1091)
.||+|+=| +.|+|+.+||++|+.+.+ +.|.
T Consensus 890 ~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~-~S~T 925 (935)
T COG0178 890 TADWIIDLGPEGGDGGGEIVASGTPEEVAKVK-ASYT 925 (935)
T ss_pred ecCEEEEcCCCCCCCCceEEEecCHHHHHhCc-cchh
Confidence 99999999 578999999999999863 4443
No 436
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.77 E-value=7.5e-18 Score=218.23 Aligned_cols=210 Identities=19% Similarity=0.212 Sum_probs=144.7
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh------c---cCCCCCcEEEECCccccCCC----------hHHHhhc
Q 001371 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIE------R---FYDPQAGEVLIDGINLKEFQ----------LQWIRKK 461 (1091)
Q Consensus 401 vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~------g---~~~~~~G~I~idg~~i~~~~----------~~~lr~~ 461 (1091)
=|||++.+||-|.+++|.|-||||||||++=.+ . -.+..+--|.||-.||..-+ .+.+|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999997554 1 11333445888877764433 2445655
Q ss_pred eeEEec------cC--cccc------------ccHHHHhccCCC-----------CCCHH-----------------HHH
Q 001371 462 IGLVSQ------EP--VLFT------------GSIKDNIAYGKD-----------DATTE-----------------EIR 493 (1091)
Q Consensus 462 ia~V~Q------~~--~Lf~------------~TIreNI~~g~~-----------~~~~~-----------------~i~ 493 (1091)
+|-.|+ .| +-|| |.|+=++.|-.+ .+.+| .+.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 543222 11 1222 011111111100 00000 011
Q ss_pred HHHH-------HcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcC---CCEEEeeCCCCCCCHHhHHHHHH
Q 001371 494 VATE-------LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESEKVVQE 563 (1091)
Q Consensus 494 ~a~~-------~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~---~~IliLDE~tSaLD~~te~~i~~ 563 (1091)
+|++ ...--+.+..+--||-+ +|..-.+|||||.|||-||.-|.++ +.+|||||||.+|+++.-+.+.+
T Consensus 1665 ea~~~F~~~~~i~~~L~~L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~ 1743 (1809)
T PRK00635 1665 EVAETFPFLKKIQKPLQALIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV 1743 (1809)
T ss_pred HHHHHhhccHHHHHHHHHHHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH
Confidence 1111 11111223334335554 7999999999999999999999976 78999999999999998888888
Q ss_pred HHHHHc-CCCeEEEEccCchhhhccCeEEEE------eCCEEeeecChhHHhcCC
Q 001371 564 ALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDP 611 (1091)
Q Consensus 564 ~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl------~~G~Ive~Gt~~eL~~~~ 611 (1091)
.++++. +|.|+|+|.|++..++.||+|+-| +.|+|+.+||++|+.+.+
T Consensus 1744 ~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1744 QLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 887764 689999999999999999999999 478999999999998763
No 437
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.76 E-value=2e-18 Score=181.87 Aligned_cols=144 Identities=13% Similarity=0.159 Sum_probs=108.6
Q ss_pred ccceeEEeeCCC-EEEEEcCCCCcHHHHHHHHh--------ccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccc
Q 001371 402 FSGFSISISSGT-TAALVGQSGSGKSTVISLIE--------RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF 472 (1091)
Q Consensus 402 L~~isl~i~~G~-~vaIVG~sGsGKSTLl~ll~--------g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf 472 (1091)
..++||++++|+ .++|+||+|||||||++.|. |.+.|....+ .++|+.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 457899999996 69999999999999999988 5555532211 2444444411
Q ss_pred cccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCC
Q 001371 473 TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1091)
Q Consensus 473 ~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSa 552 (1091)
.++. +..+.++-.++|+|+|||..|++++ .+|++++||||+++
T Consensus 78 --------~lg~----------------------------~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 78 --------DIGD----------------------------EQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred --------ecCc----------------------------hhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 1110 0111222357999999999999995 89999999999999
Q ss_pred CCHHhHHHHH-HHHHHHc-CCCeEEEEccCchhhhccCeEEEEeCCEEeee
Q 001371 553 LDAESEKVVQ-EALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1091)
Q Consensus 553 LD~~te~~i~-~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 601 (1091)
+|+.+...+. ..++.+. .+.|+|++||.....+.||++++|++|++...
T Consensus 121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 121 TDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 9999887774 4455544 37899999999777788999999999999765
No 438
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.74 E-value=1.5e-17 Score=179.62 Aligned_cols=199 Identities=23% Similarity=0.398 Sum_probs=150.6
Q ss_pred CCCCcEEEEeEEEECCCC-----------------------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001371 379 DIRGDIELRDVYFSYPAR-----------------------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435 (1091)
Q Consensus 379 ~~~~~I~~~~vsf~Y~~~-----------------------~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~ 435 (1091)
...+.+.|+|++-.+.+. .+.++|+|+||+|+||+.++|||+|||||||++.+|+|+
T Consensus 353 ~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 353 KLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred ccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 345567888887766321 023689999999999999999999999999999999986
Q ss_pred --------CCCCCcEEEECCccccCCChHHHhhceeEEec--cCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHH
Q 001371 436 --------YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQ--EPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI 505 (1091)
Q Consensus 436 --------~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q--~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i 505 (1091)
|.|++|.|.+--..+ -+.+|- ||.+=.-||-|-+. ...-|-.--.++++.+++.|-+
T Consensus 433 ~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep~f~~~tilehl~--s~tGD~~~AveILnraGlsDAv 499 (593)
T COG2401 433 QKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEPEFGEVTILEHLR--SKTGDLNAAVEILNRAGLSDAV 499 (593)
T ss_pred hhcccccccCCCCCceeccccch-----------hhccCcccccccCchhHHHHHh--hccCchhHHHHHHHhhccchhh
Confidence 689999998753222 223333 34433347777763 2212223345677888887754
Q ss_pred hhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEccCchh
Q 001371 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLST 583 (1091)
Q Consensus 506 ~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~ 583 (1091)
. |.... ..||-|||-|..||+++-..|.+++-||.-|.||+.|...+-..|.++. .+-|.++||||...
T Consensus 500 l-----yRr~f----~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv 570 (593)
T COG2401 500 L-----YRRKF----SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570 (593)
T ss_pred h-----hhccH----hhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 3 22223 4599999999999999999999999999999999999999988888876 67899999999998
Q ss_pred hhc--cCeEEEEeCCEEe
Q 001371 584 VRN--ADMIAVIHRGKIV 599 (1091)
Q Consensus 584 i~~--aD~Iivl~~G~Iv 599 (1091)
+.. -|.++.+.=|++.
T Consensus 571 ~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 571 GNALRPDTLILVGYGKVP 588 (593)
T ss_pred HhccCCceeEEeeccccc
Confidence 864 6999888766654
No 439
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.72 E-value=2.2e-17 Score=167.67 Aligned_cols=135 Identities=25% Similarity=0.359 Sum_probs=99.3
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee-EEeccCccccccHHHHhccCC
Q 001371 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG-LVSQEPVLFTGSIKDNIAYGK 484 (1091)
Q Consensus 406 sl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia-~V~Q~~~Lf~~TIreNI~~g~ 484 (1091)
++.+.++.++.|+||+||||||+++.+.-..-..+|.+.... ++ +.+ ++++...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 344445679999999999999999997655544544443211 00 111 122222111
Q ss_pred CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc----CCCEEEeeCCCCCCCHHhHHH
Q 001371 485 DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK----DPRILLLDEATSALDAESEKV 560 (1091)
Q Consensus 485 ~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~----~~~IliLDE~tSaLD~~te~~ 560 (1091)
+ -+. .+||+||+||++|||++.. +|+++|||||++++|++....
T Consensus 72 --------------------i-------~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 --------------------I-------FTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred --------------------e-------hhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 0 000 1199999999999999986 789999999999999999999
Q ss_pred HHHHHHHHcC-CCeEEEEccCchhhhccCeEEEEeC
Q 001371 561 VQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVIHR 595 (1091)
Q Consensus 561 i~~~l~~~~~-~~T~I~ItHrls~i~~aD~Iivl~~ 595 (1091)
+.+.+.+..+ +.|+|++||+......+|+++.|+.
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 9888887653 5799999999999999999999964
No 440
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.71 E-value=2.6e-17 Score=180.29 Aligned_cols=190 Identities=21% Similarity=0.371 Sum_probs=132.4
Q ss_pred eEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEE-----------ECCccccCCCh-
Q 001371 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGINLKEFQL- 455 (1091)
Q Consensus 388 ~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~-----------idg~~i~~~~~- 455 (1091)
++..+|..+ ...|..+- ..++|+.++|+||+|-||||-++.|.|++.|+=|+-. ..|..+.++=.
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 456677532 22232221 2358999999999999999999999999999877531 11211111100
Q ss_pred ---HHHh--hceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHH
Q 001371 456 ---QWIR--KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1091)
Q Consensus 456 ---~~lr--~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQR 530 (1091)
..+| .++-||.-=|-.+.|+++|=+.--.+. ....++.+..+|.+ .+...-..||||+-||
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~---g~~devve~l~L~n-----------vl~r~v~~LSGGELQr 221 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDER---GKFDEVVERLGLEN-----------VLDRDVSELSGGELQR 221 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhc---CcHHHHHHHhcchh-----------hhhhhhhhcCchHHHH
Confidence 0111 123444445677888888866522111 12333444444443 3344556799999999
Q ss_pred HHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCeEEEEe
Q 001371 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIH 594 (1091)
Q Consensus 531 ialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~-aD~Iivl~ 594 (1091)
+|||-|+.|++|+|++|||||-||....-..-+.|+++.+ +|+||+|-|.|..+.. +|.|.++=
T Consensus 222 ~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 222 VAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 9999999999999999999999999888888888888887 6999999999999976 89998884
No 441
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=3.9e-16 Score=172.24 Aligned_cols=188 Identities=20% Similarity=0.297 Sum_probs=121.1
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---------------------------------------Cc-
Q 001371 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---------------------------------------AG- 441 (1091)
Q Consensus 402 L~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~---------------------------------------~G- 441 (1091)
+++.++++.+| +++|+||+||||||++.+|.-..... +|
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 34566777676 78999999999999998864322100 11
Q ss_pred -EEEECCccccCCChHHHh---hceeEEeccCccccccHHHHhccCCC---CCCH------HHHHHHHHHcccHHHHhhC
Q 001371 442 -EVLIDGINLKEFQLQWIR---KKIGLVSQEPVLFTGSIKDNIAYGKD---DATT------EEIRVATELANAAKFIDKL 508 (1091)
Q Consensus 442 -~I~idg~~i~~~~~~~lr---~~ia~V~Q~~~Lf~~TIreNI~~g~~---~~~~------~~i~~a~~~a~l~~~i~~l 508 (1091)
.+.+||..++. +.++. ..|.+.|++..|+.++-.+-..|-+. .... +++.++++.- +.+.+-
T Consensus 91 ~~~~ing~~~~~--l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~---~~~~~g 165 (270)
T cd03242 91 RKARLNGIKVRR--LSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQR---NALLKG 165 (270)
T ss_pred eEEEECCeeccC--HHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH---HHHhCC
Confidence 34466665544 23333 34677777777885433322222110 1111 1223332221 112224
Q ss_pred CCCcccccccCCCC----CChHHHHHHHHHHHh---------hcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEE
Q 001371 509 PQGIDTLVGEHGTQ----LSGGQKQRIAIARAI---------LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTV 575 (1091)
Q Consensus 509 p~G~~T~vge~G~~----LSGGQkQRialARAl---------l~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I 575 (1091)
|+.++..+.-++.. +|+||||+++|||++ +++|+++||||||++||+...+.+.+.+.+. + .++
T Consensus 166 ~~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~--~-q~i 242 (270)
T cd03242 166 PHRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR--V-QTF 242 (270)
T ss_pred CChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC--C-CEE
Confidence 77777776655543 899999999999997 4899999999999999999999999988764 2 455
Q ss_pred EEccCchhhhc-c---CeEEEEeCCEE
Q 001371 576 IVAHRLSTVRN-A---DMIAVIHRGKI 598 (1091)
Q Consensus 576 ~ItHrls~i~~-a---D~Iivl~~G~I 598 (1091)
+++|....+.. | ++|+.+++|+|
T Consensus 243 i~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 243 VTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred EEeCCchhccchhccCccEEEEeCcEE
Confidence 55555444433 4 78999999986
No 442
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.66 E-value=2.4e-16 Score=167.91 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=112.8
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee-EEeccCccccccH
Q 001371 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG-LVSQEPVLFTGSI 476 (1091)
Q Consensus 398 ~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia-~V~Q~~~Lf~~TI 476 (1091)
...+.+|+++++++|++++|.||+||||||+++.+.- -.+..++| |||.+...+. +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~ 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--I 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--c
Confidence 3478999999999999999999999999999999881 13344666 7777653221 1
Q ss_pred HHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHh--hcCCCEEEeeCC---CC
Q 001371 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEA---TS 551 (1091)
Q Consensus 477 reNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAl--l~~~~IliLDE~---tS 551 (1091)
.++ ++...++.+. . ..++|.|++||..+|+++ ..+|+++||||| |+
T Consensus 73 ~~~---------------il~~~~l~d~----------~----~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 73 VDC---------------ILARVGASDS----------Q----LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred cce---------------eEeeeccccc----------h----hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 111 1112222111 1 246999999999999999 899999999999 99
Q ss_pred CCCHHhHH-HHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecC
Q 001371 552 ALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 552 aLD~~te~-~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 603 (1091)
++|+.... .+.+.+.+ ..++|+|++||..+..+.||++..+++|++...++
T Consensus 124 ~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 99998554 33344543 24789999999755566799999999999976653
No 443
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.64 E-value=1.6e-16 Score=145.58 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=72.3
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHH
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIre 478 (1091)
.++|++++|++++|+.++|+||||||||||++++. +|++.++|.|+..++.++.++.++|+||+ +|.+||||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999986 89999999999999999999999999998 99999999
Q ss_pred Hhcc
Q 001371 479 NIAY 482 (1091)
Q Consensus 479 NI~~ 482 (1091)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9997
No 444
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=8.4e-16 Score=191.67 Aligned_cols=95 Identities=29% Similarity=0.495 Sum_probs=87.5
Q ss_pred cccCCCCCChHHHHHHHHHHHhhcCC--CEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEE
Q 001371 516 VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAV 592 (1091)
Q Consensus 516 vge~G~~LSGGQkQRialARAll~~~--~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iiv 592 (1091)
.+....+|||||+|||+|||||..+| ++|||||||++||++..+.+.+.|+++. +|+|+|+|+|+++.++.||+|++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 46667899999999999999999986 8999999999999999999999998875 47899999999999999999999
Q ss_pred E------eCCEEeeecChhHHhcC
Q 001371 593 I------HRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 593 l------~~G~Ive~Gt~~eL~~~ 610 (1091)
| ++|+|+++|+++++...
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred ecccccCCCCEEeeccCHHHHhcC
Confidence 9 99999999999998654
No 445
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.63 E-value=7.8e-16 Score=192.32 Aligned_cols=100 Identities=32% Similarity=0.525 Sum_probs=89.5
Q ss_pred Ccccc-cccCCCCCChHHHHHHHHHHHhhcCC--CEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc
Q 001371 511 GIDTL-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN 586 (1091)
Q Consensus 511 G~~T~-vge~G~~LSGGQkQRialARAll~~~--~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~ 586 (1091)
|++.. .+..-.+|||||||||+|||||..+| ++|||||||++||++..+.+.+.|+++. +|+|+|+|+|+++.+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 44433 45666789999999999999999997 9999999999999999999999998875 47899999999999999
Q ss_pred cCeEEEE------eCCEEeeecChhHHhcC
Q 001371 587 ADMIAVI------HRGKIVEKGTHSKLVED 610 (1091)
Q Consensus 587 aD~Iivl------~~G~Ive~Gt~~eL~~~ 610 (1091)
||+|++| ++|+|+.+|+++++.+.
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998754
No 446
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.59 E-value=1.5e-15 Score=160.51 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=101.4
Q ss_pred eeEEeeCCCEEEEEcCCCCcHHHHHHHHhc-cCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccC
Q 001371 405 FSISISSGTTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG 483 (1091)
Q Consensus 405 isl~i~~G~~vaIVG~sGsGKSTLl~ll~g-~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g 483 (1091)
.++++.+|++++|+||+||||||+++.|.+ .+.+..|...-. .+..+++..|.-..|. ..++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-----------~~~~i~~~dqi~~~~~--~~d~---- 84 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-----------ESASIPLVDRIFTRIG--AEDS---- 84 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-----------cccccCCcCEEEEEec--Cccc----
Confidence 345556899999999999999999999993 332222321100 0123333332211111 0011
Q ss_pred CCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHH
Q 001371 484 KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563 (1091)
Q Consensus 484 ~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~ 563 (1091)
+-++-..+++++|| ++.+.+...+|+++||||||+++|+.....+.+
T Consensus 85 --------------------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 85 --------------------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred --------------------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 11222345666665 666677789999999999999999987665544
Q ss_pred H-HHHHc-CCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhH
Q 001371 564 A-LDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 564 ~-l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~e 606 (1091)
. ++.+. .+.++|++||....+..+|++..+++|++.+.++..+
T Consensus 132 ~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 132 AVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 3 33332 4789999999999999999999999999998876543
No 447
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.59 E-value=2.3e-15 Score=157.71 Aligned_cols=138 Identities=17% Similarity=0.218 Sum_probs=94.3
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccc-cccHH
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIK 477 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf-~~TIr 477 (1091)
++|++|++|+. |+.++|+||+|||||||++.|.+..- +..+|.++.. -.++.|...+| +.|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a---------~~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA---------SSFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec---------CccCcccceEEEeccch
Confidence 46788887765 79999999999999999999987543 1235555432 13566655555 46999
Q ss_pred HHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHh
Q 001371 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557 (1091)
Q Consensus 478 eNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~t 557 (1091)
||+.++.... .++..+ +.+.++.+. .++|+++|+|||++++|+..
T Consensus 78 d~l~~~~s~~-~~e~~~------~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~ 122 (199)
T cd03283 78 DDLRDGISYF-YAELRR------LKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRE 122 (199)
T ss_pred hccccccChH-HHHHHH------HHHHHHhcc----------------------------CCCCeEEEEecccCCCCHHH
Confidence 9998875322 222222 223333331 07999999999999999997
Q ss_pred HHHHHH-HHHHHc-CCCeEEEEccCchhhhcc
Q 001371 558 EKVVQE-ALDRIM-VNRTTVIVAHRLSTVRNA 587 (1091)
Q Consensus 558 e~~i~~-~l~~~~-~~~T~I~ItHrls~i~~a 587 (1091)
...+.. .++.+. ++.|+|++||.+..+...
T Consensus 123 ~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 123 RQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 765543 344432 468999999998876543
No 448
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=4.5e-15 Score=196.71 Aligned_cols=118 Identities=25% Similarity=0.340 Sum_probs=106.1
Q ss_pred cccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHH------HHHHHHHhhcCCCEE
Q 001371 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ------RIAIARAILKDPRIL 544 (1091)
Q Consensus 471 Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQ------RialARAll~~~~Il 544 (1091)
.|+||++|||.+ +|+++++ ..+++.++.++|+..+|.| ||.++.+| .||||||| |++||||++.+|+||
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 589999999999 8888777 6889999999999999999 99999887 89999999 999999999999999
Q ss_pred EeeCCCCCCCHHhHHHHHHHHHHHc------CCCeEEEEccCchhhh------ccCeEEEE
Q 001371 545 LLDEATSALDAESEKVVQEALDRIM------VNRTTVIVAHRLSTVR------NADMIAVI 593 (1091)
Q Consensus 545 iLDE~tSaLD~~te~~i~~~l~~~~------~~~T~I~ItHrls~i~------~aD~Iivl 593 (1091)
+|||||++||+.+...+.+.|..+. .+.|+|+|||++..+. .+|+.+.+
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 9999999999999999988887653 3679999999999875 35666655
No 449
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.56 E-value=1.7e-14 Score=156.84 Aligned_cols=142 Identities=18% Similarity=0.265 Sum_probs=106.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCC-hHHHhhceeEEeccCccccccHHHHhccCCCCCCHHH
Q 001371 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE 491 (1091)
Q Consensus 413 ~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~-~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~ 491 (1091)
+.++|+||+|||||||++.|.|++.|.+|+|.++|.++..++ .+++...++++||...--..++.||- |. .+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~k---~~ 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----PK---AE 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----hH---HH
Confidence 688999999999999999999999999999999999998775 56788889999997532223454441 10 00
Q ss_pred HHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCC
Q 001371 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571 (1091)
Q Consensus 492 i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~ 571 (1091)
+ -..++|++ +|+++|+|||++ ...+.+.++.+..+
T Consensus 185 --------~-----------------------------~~~~i~~~--~P~villDE~~~------~e~~~~l~~~~~~G 219 (270)
T TIGR02858 185 --------G-----------------------------MMMLIRSM--SPDVIVVDEIGR------EEDVEALLEALHAG 219 (270)
T ss_pred --------H-----------------------------HHHHHHhC--CCCEEEEeCCCc------HHHHHHHHHHHhCC
Confidence 0 14566664 999999999974 23344444444468
Q ss_pred CeEEEEccCchh--h------------hccCeEEEEeCCEEeeecChhHHh
Q 001371 572 RTTVIVAHRLST--V------------RNADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 572 ~T~I~ItHrls~--i------------~~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
+|+|+++|..+. + ..+|++++|++|+ ..|+.+++.
T Consensus 220 ~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 220 VSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred CEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 999999997655 3 4489999999887 677776653
No 450
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.50 E-value=4.7e-11 Score=140.11 Aligned_cols=317 Identities=9% Similarity=0.047 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCC---CChhhHHhHHhhhHHHHHHHhhhh
Q 001371 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPE---HSSGAIGARLSADAASVRALVGDA 840 (1091)
Q Consensus 764 ~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~~---tp~GrilnRfs~D~~~id~~l~~~ 840 (1091)
+.+|.+++.+.++....+.++-.....++-.-|-+.+..+-+..--.||.... +-+=..=.|...|+...-+..-.-
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 67888899999999999999988888888888888888888887744443211 001122357777776655543333
Q ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHhHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHhH
Q 001371 841 LARIVQNISTAAAGLIIAF---------------TASWQLALIILVMLPLIGVS-GYTQMKFMKGFSADAKMKYEEASQV 904 (1091)
Q Consensus 841 l~~~~~~~~~~~~~~i~~~---------------~~~w~l~l~~i~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1091)
...+++.+++++.-.++.. .+...+.++++.-+++.-.. .++.++..+-.-+..++++.=|..+
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 3444444443332222211 11112233333333332222 2344444444445556665555553
Q ss_pred HHHHHccchHhhhccchHHHHH----HHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCcCHH
Q 001371 905 ANDAVGSIRTVASFCAEEKVMQ----LYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFS 980 (1091)
Q Consensus 905 ~~e~l~gl~TIra~~~e~~f~~----~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g~~li~~g~~~~~ 980 (1091)
.-.-++...|..|+.|+.-.+ +|....+...+...+......+-.|........ -...++-....|.++++
T Consensus 249 -vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~----P~li~ap~~f~g~i~~G 323 (604)
T COG4178 249 -VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVL----PILIAAPRYFSGQITFG 323 (604)
T ss_pred -HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHH----HHHhccHhhhcCcChHH
Confidence 345556667788888765433 444444444433333333332323333222211 11122333567888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCC-----CCCCCCCCCCCcc--cccceeEEEeeeeeeCC
Q 001371 981 DVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRE-----SKIDPSDESGTIL--EDVKGEIELHHVSFKYP 1053 (1091)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~~-----~~~~~~~~~~~~~--~~~~G~I~f~nVs~~Y~ 1053 (1091)
+++.+.-++.....+++.-....+....-.....|+.+..+.- ++..+....+... ...+..|+|+|++.+-|
T Consensus 324 ~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p 403 (604)
T COG4178 324 GLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTP 403 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECC
Confidence 9988877777666666665566667776667777775443211 1111111101000 11168999999999997
Q ss_pred CCCCCccccccceeeeCCCEEEEEcCCCCCcccc
Q 001371 1054 SRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQL 1087 (1091)
Q Consensus 1054 ~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~ 1087 (1091)
+.- +.|++++|.|+|||.+=|.||||||||+|
T Consensus 404 ~~~--~ll~~l~~~v~~G~~llI~G~SG~GKTsL 435 (604)
T COG4178 404 DGQ--TLLSELNFEVRPGERLLITGESGAGKTSL 435 (604)
T ss_pred CCC--eeeccceeeeCCCCEEEEECCCCCCHHHH
Confidence 642 68999999999999999999999999987
No 451
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4.8e-14 Score=152.90 Aligned_cols=196 Identities=27% Similarity=0.399 Sum_probs=136.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc--cCCCCCcEEEECCccccCCChHHHhh
Q 001371 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDGINLKEFQLQWIRK 460 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g--~~~~~~G~I~idg~~i~~~~~~~lr~ 460 (1091)
+|.++|.+.+-. .+..+.|.||.|-.|..+++|||+|-|||||++-|.- +--|..=.
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnID------------------ 322 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNID------------------ 322 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCc------------------
Confidence 477888777764 3468899999999999999999999999999998863 22222222
Q ss_pred ceeEEeccCccccccHHHHhcc---------------------CCCCCCHHHHHHH---HHHccc-------HHHHhhCC
Q 001371 461 KIGLVSQEPVLFTGSIKDNIAY---------------------GKDDATTEEIRVA---TELANA-------AKFIDKLP 509 (1091)
Q Consensus 461 ~ia~V~Q~~~Lf~~TIreNI~~---------------------g~~~~~~~~i~~a---~~~a~l-------~~~i~~lp 509 (1091)
+-||-|+..-=+.|--+-++- |.. .-.|++.++ ++..++ ...+..|
T Consensus 323 -vLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~-taaErl~~v~~ELraiGA~sAEarARRILAGL- 399 (807)
T KOG0066|consen 323 -VLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDT-TAAERLKEVADELRAIGADSAEARARRILAGL- 399 (807)
T ss_pred -eEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCch-HHHHHHHHHHHHHHHhccccchhHHHHHHhhc-
Confidence 444555443333332222221 111 011222222 222222 2233333
Q ss_pred CCcccccccCC-CCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc-c
Q 001371 510 QGIDTLVGEHG-TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1091)
Q Consensus 510 ~G~~T~vge~G-~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-a 587 (1091)
|++-+.-++. ..+|||=|-|++|||||+-.|-+|.|||||..||-..---+.+.|..+ .||.++|+|.-.++.+ |
T Consensus 400 -GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VC 476 (807)
T KOG0066|consen 400 -GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVC 476 (807)
T ss_pred -CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHH
Confidence 7777777776 479999999999999999999999999999999987766677777777 4899999999999987 9
Q ss_pred CeEEEEeCCEEe-eecChh
Q 001371 588 DMIAVIHRGKIV-EKGTHS 605 (1091)
Q Consensus 588 D~Iivl~~G~Iv-e~Gt~~ 605 (1091)
..|+.||+-++- ..|+|.
T Consensus 477 tdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 477 TDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred HHHhhhhhhhhhhhcchHH
Confidence 999999987764 245553
No 452
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.47 E-value=2.3e-13 Score=146.14 Aligned_cols=169 Identities=22% Similarity=0.282 Sum_probs=100.3
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHH-hccCC--CCCcEEEECCccccCC------ChHHHhhceeEEeccCccc-
Q 001371 403 SGFSISISSGTTAALVGQSGSGKSTVISLI-ERFYD--PQAGEVLIDGINLKEF------QLQWIRKKIGLVSQEPVLF- 472 (1091)
Q Consensus 403 ~~isl~i~~G~~vaIVG~sGsGKSTLl~ll-~g~~~--~~~G~I~idg~~i~~~------~~~~lr~~ia~V~Q~~~Lf- 472 (1091)
++..+.+.| ..++|+||+||||||++.+| .-+.. .... .+...+++ ........|....+++--.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~----r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~ 90 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSF----RGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEF 90 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTT----T-SSGGTCB--BTTB---SEEEEEEEEECTTEES
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccc----cccccccccccccccccccccccccccccccccc
Confidence 345555544 59999999999999999999 33331 1111 11111111 0111222344433322111
Q ss_pred ---cc--cHHHHh--------ccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHH----H
Q 001371 473 ---TG--SIKDNI--------AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA----R 535 (1091)
Q Consensus 473 ---~~--TIreNI--------~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialA----R 535 (1091)
.. .|+..+ .......+.+++.+.++...+... .||||||-+++|| .
T Consensus 91 ~~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~ 153 (220)
T PF02463_consen 91 ELDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLAL 153 (220)
T ss_dssp SSSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-----------------cccccccccccccccccc
Confidence 00 111111 111112344555555444433221 8999999999997 3
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEE
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl 593 (1091)
.-+.++|++||||+.++||....+.+.+.|++..++.-+|++||+..+...||+.+.+
T Consensus 154 ~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 154 QRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp HTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3467899999999999999999999999999988888999999999999999999887
No 453
>PRK00064 recF recombination protein F; Reviewed
Probab=99.45 E-value=1.3e-12 Score=149.92 Aligned_cols=76 Identities=26% Similarity=0.362 Sum_probs=65.0
Q ss_pred CCCChHHHHHHHHHHHhh---------cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhc---cC
Q 001371 521 TQLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN---AD 588 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll---------~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~---aD 588 (1091)
..+|+||+|+++||+++. ++|||+|||||+|.||+.....+.+.+.+. +.++++.||....+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 578999999999999884 799999999999999999988888887653 4588888898766543 56
Q ss_pred eEEEEeCCEE
Q 001371 589 MIAVIHRGKI 598 (1091)
Q Consensus 589 ~Iivl~~G~I 598 (1091)
+++.+++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 454
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.44 E-value=2.6e-13 Score=144.17 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=101.9
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCcEEEECCccccCCChHHHhhceeEEeccCcccc-ccH
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSI 476 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~-~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~-~TI 476 (1091)
+.+.+|++|++++ ++++|+||+||||||+++.+.+..-. ..|.. .+. .+.+++++.| +|. -++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~---------vp~--~~~~i~~~~~---i~~~~~~ 82 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSF---------VPA--SKAEIGVVDR---IFTRIGA 82 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCe---------ecc--ccceecceee---EeccCCc
Confidence 4688999999887 99999999999999999999764311 12211 111 1235677655 232 345
Q ss_pred HHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHh--hcCCCEEEeeCC---CC
Q 001371 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEA---TS 551 (1091)
Q Consensus 477 reNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAl--l~~~~IliLDE~---tS 551 (1091)
+||+..|.. -=...+..|++++ ..+|+++||||| |+
T Consensus 83 ~~~ls~g~s---------------------------------------~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 83 SDDLAGGRS---------------------------------------TFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred hhhhccCcc---------------------------------------hHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 555554421 1111122344444 369999999999 99
Q ss_pred CCCHHh-HHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCEEeeecChhHH
Q 001371 552 ALDAES-EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1091)
Q Consensus 552 aLD~~t-e~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL 607 (1091)
++|... ...+.+.+.+. .+.|+|++||.......+|++.-+++|++...++.+++
T Consensus 124 ~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 124 TYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred hHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 999864 23444455432 37899999999877777888888889998876655544
No 455
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.44 E-value=4.3e-13 Score=140.73 Aligned_cols=140 Identities=17% Similarity=0.177 Sum_probs=96.2
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee-EEeccCccccccH
Q 001371 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG-LVSQEPVLFTGSI 476 (1091)
Q Consensus 398 ~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia-~V~Q~~~Lf~~TI 476 (1091)
+.++.+|++|++++|+.++|.||+||||||+++.+.+.. +..++| +||-+. ..-++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccC
Confidence 357899999999999999999999999999999998763 222333 222111 11244
Q ss_pred HHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHH
Q 001371 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1091)
Q Consensus 477 reNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~ 556 (1091)
.|||.. .+..+ ..+.++..++|+|+||+ +.+-++..+|+++|||||++++|+.
T Consensus 72 ~d~I~~------------------------~~~~~--d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~ 124 (204)
T cd03282 72 FNRLLS------------------------RLSND--DSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSA 124 (204)
T ss_pred hhheeE------------------------ecCCc--cccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHH
Confidence 555521 12111 12334456899999975 4555577899999999999999997
Q ss_pred hHHHH-HHHHHHHc-CCCeEEEEccCchhhhcc
Q 001371 557 SEKVV-QEALDRIM-VNRTTVIVAHRLSTVRNA 587 (1091)
Q Consensus 557 te~~i-~~~l~~~~-~~~T~I~ItHrls~i~~a 587 (1091)
....+ .+.++.+. .++++|++||..+.+..+
T Consensus 125 ~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 125 DGFAISLAILECLIKKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 54443 33343332 478999999998877654
No 456
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.42 E-value=6e-13 Score=144.99 Aligned_cols=181 Identities=25% Similarity=0.446 Sum_probs=133.0
Q ss_pred EEECCCCCCCccccceeEEeeCCC-----EEEEEcCCCCcHHHHHHHHhccCCCCCc-EEEECCccccCCChHHHhhcee
Q 001371 390 YFSYPARPNEQIFSGFSISISSGT-----TAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 390 sf~Y~~~~~~~vL~~isl~i~~G~-----~vaIVG~sGsGKSTLl~ll~g~~~~~~G-~I~idg~~i~~~~~~~lr~~ia 463 (1091)
.++||+ .+..+.+..|.|+.|+ .+...|.+|-||||+++.++|..+|++| +|-. + +++
T Consensus 342 ~y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~-------l-------nVS 405 (592)
T KOG0063|consen 342 RYSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV-------L-------NVS 405 (592)
T ss_pred eeccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc-------c-------cee
Confidence 467875 3467889999999986 5788999999999999999999999876 3322 2 588
Q ss_pred EEeccCc-cccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCC
Q 001371 464 LVSQEPV-LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1091)
Q Consensus 464 ~V~Q~~~-Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~ 542 (1091)
|=||.-. =|.+|+|+=+. +.++.+.-.-+...++.. |-..+..++..-.+||||+.||+|||-+|=+.++
T Consensus 406 ykpqkispK~~~tvR~ll~--------~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAd 476 (592)
T KOG0063|consen 406 YKPQKISPKREGTVRQLLH--------TKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPAD 476 (592)
T ss_pred ccccccCccccchHHHHHH--------HHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCc
Confidence 8888643 47788887542 122222222222222221 2233444556667999999999999999999999
Q ss_pred EEEeeCCCCCCCHHhHHHHHHHHHHH--cCCCeEEEEccCchhhh-ccCeEEEEeC
Q 001371 543 ILLLDEATSALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVR-NADMIAVIHR 595 (1091)
Q Consensus 543 IliLDE~tSaLD~~te~~i~~~l~~~--~~~~T~I~ItHrls~i~-~aD~Iivl~~ 595 (1091)
+++.|||.+-||++....--+.+++. ..+||-.+|-|.+-.-. .|||++|.+.
T Consensus 477 vYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 477 VYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred eEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 99999999999998777666666663 35789999999975443 3999999863
No 457
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.37 E-value=5.1e-13 Score=164.24 Aligned_cols=105 Identities=25% Similarity=0.397 Sum_probs=88.8
Q ss_pred HHHHHHHcccHHHHhhCCCCcccccccCC------CCCChHHHHHHHHHHHhh----------cCCCEEEeeCCC-CCCC
Q 001371 492 IRVATELANAAKFIDKLPQGIDTLVGEHG------TQLSGGQKQRIAIARAIL----------KDPRILLLDEAT-SALD 554 (1091)
Q Consensus 492 i~~a~~~a~l~~~i~~lp~G~~T~vge~G------~~LSGGQkQRialARAll----------~~~~IliLDE~t-SaLD 554 (1091)
+.+.++..+. ++...+|+++++.+++.| .+||||||||++||||+. .+|+++|||||| ++||
T Consensus 433 ~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld 511 (562)
T PHA02562 433 INHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALD 511 (562)
T ss_pred HHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccc
Confidence 4444444432 344467999999999988 789999999999999887 599999999998 7899
Q ss_pred HHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeC-CEE
Q 001371 555 AESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR-GKI 598 (1091)
Q Consensus 555 ~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~-G~I 598 (1091)
+.+...+.+.|.++ +++|+|+|||+......||++++|++ |+.
T Consensus 512 ~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 512 AEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 99999999999887 78999999999988889999999986 543
No 458
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.22 E-value=1.7e-10 Score=133.60 Aligned_cols=176 Identities=19% Similarity=0.307 Sum_probs=125.8
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEEC---CccccC-----CChHHHhhceeEEeccCc
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID---GINLKE-----FQLQWIRKKIGLVSQEPV 470 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~id---g~~i~~-----~~~~~lr~~ia~V~Q~~~ 470 (1091)
..+++++ |++++|++++|+|++|+|||||+++|.|+++|+.|.|.+. |.++.+ ++...+++.|.+|.+..
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~- 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD- 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC-
Confidence 4589999 9999999999999999999999999999999999999995 444553 45556788888886421
Q ss_pred cccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCE-EEeeC-
Q 001371 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI-LLLDE- 548 (1091)
Q Consensus 471 Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~I-liLDE- 548 (1091)
+..-+++..+.-.+.+.++... +|.|-.+=-. +|+ | .|||+ | .| +.+.|
T Consensus 224 ---------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~D--slt-----r--~A~A~-r--Eisl~~ge~ 274 (438)
T PRK07721 224 ---------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMD--SVT-----R--VAMAQ-R--EIGLAVGEP 274 (438)
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEe--ChH-----H--HHHHH-H--HHHHhcCCC
Confidence 1123444444444445566653 3666544321 121 1 22222 0 00 11234
Q ss_pred -CCCCCCHHhHHHHHHHHHHHc---CCC-----eEEEEccCchhhhccCeEEEEeCCEEeeecChhH
Q 001371 549 -ATSALDAESEKVVQEALDRIM---VNR-----TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1091)
Q Consensus 549 -~tSaLD~~te~~i~~~l~~~~---~~~-----T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~e 606 (1091)
.|+++|+.....+.+.+++.. +|. |+++.+|+++. .-||++.++.||+|+..|+..+
T Consensus 275 P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 275 PTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 589999999988888887765 465 99999999985 7799999999999999887654
No 459
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.19 E-value=2.5e-11 Score=129.82 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhcCCCEEEeeCCC-----CCCCHHhHHHHHHHHHHHc
Q 001371 526 GQKQRIAIARAILKDPRILLLDEAT-----SALDAESEKVVQEALDRIM 569 (1091)
Q Consensus 526 GQkQRialARAll~~~~IliLDE~t-----SaLD~~te~~i~~~l~~~~ 569 (1091)
-|++++.|||+++.+|++++||||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998763
No 460
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.19 E-value=4e-11 Score=145.93 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=72.1
Q ss_pred CCCChHHHHHHHHHHHhhcC----CCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCC
Q 001371 521 TQLSGGQKQRIAIARAILKD----PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll~~----~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G 596 (1091)
..|||||+||++||||++.. |+++||||||++||+.+...+.+.|.++.+++|+|+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 46899999999999999875 69999999999999999999999999988899999999999999999999999987
Q ss_pred E
Q 001371 597 K 597 (1091)
Q Consensus 597 ~ 597 (1091)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 461
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.19 E-value=9e-11 Score=124.44 Aligned_cols=135 Identities=16% Similarity=0.231 Sum_probs=91.2
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc--cCCCCCcEEEECCccccCCChHHHhhceeEEeccCcccc--cc
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT--GS 475 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g--~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~--~T 475 (1091)
.|-+|+++.=..+.+++|+||+|+||||+++.+.. .+ +..|...... ...++|..|.-.-++ +|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 45556665422237999999999999999999983 33 5567655432 125777777633221 11
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCH
Q 001371 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1091)
Q Consensus 476 IreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~ 555 (1091)
+.+++ ..| --+-||+++|+++..+|+++|||||++++|+
T Consensus 85 i~~~~---------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 85 VSSGQ---------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred hhhcc---------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 21111 011 2345999999999999999999999999998
Q ss_pred Hh-HHHHHHHHHHHcC----CCeEEEEccCchhhhcc
Q 001371 556 ES-EKVVQEALDRIMV----NRTTVIVAHRLSTVRNA 587 (1091)
Q Consensus 556 ~t-e~~i~~~l~~~~~----~~T~I~ItHrls~i~~a 587 (1091)
.. .....+.++.+.+ +.++|++||.++.++..
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 74 4444555655542 24899999999887654
No 462
>PRK10869 recombination and repair protein; Provisional
Probab=99.16 E-value=6.5e-11 Score=142.52 Aligned_cols=76 Identities=20% Similarity=0.297 Sum_probs=71.4
Q ss_pred CCChHHHHHHHHHHHhhc----CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEeCCE
Q 001371 522 QLSGGQKQRIAIARAILK----DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1091)
Q Consensus 522 ~LSGGQkQRialARAll~----~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~ 597 (1091)
.|||||+|||+|||++.. +|+++|||||+++||..+...+.+.|+++.+++|+|+|||.++....||+.++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 599999999999999996 6899999999999999999999999999877899999999999999999999998764
No 463
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.15 E-value=4.6e-11 Score=124.20 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=54.2
Q ss_pred CCCCCChHHHHHHHHHHHhhc--CCCEEEeeCCCCCCCHHhHHHHH-HHHHHHc--CCCeEEEEccCchhhhccCeEEEE
Q 001371 519 HGTQLSGGQKQRIAIARAILK--DPRILLLDEATSALDAESEKVVQ-EALDRIM--VNRTTVIVAHRLSTVRNADMIAVI 593 (1091)
Q Consensus 519 ~G~~LSGGQkQRialARAll~--~~~IliLDE~tSaLD~~te~~i~-~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl 593 (1091)
+-.+||+|++| +++++.. +|+++|+|||++++|+.....+. ..++.+. .+.++|++||..+..+.+|+---+
T Consensus 58 ~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v 134 (185)
T smart00534 58 GLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGV 134 (185)
T ss_pred cccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccc
Confidence 34578888887 4555555 99999999999999999666554 4445443 268999999999876667753333
Q ss_pred eCCE
Q 001371 594 HRGK 597 (1091)
Q Consensus 594 ~~G~ 597 (1091)
++++
T Consensus 135 ~~~~ 138 (185)
T smart00534 135 RNLH 138 (185)
T ss_pred eEEE
Confidence 4443
No 464
>PRK13695 putative NTPase; Provisional
Probab=99.12 E-value=4.9e-11 Score=122.96 Aligned_cols=82 Identities=21% Similarity=0.269 Sum_probs=65.7
Q ss_pred ccCCCCCChHHHHHHHHHHHhhcCCCEEEeeC--CCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEe
Q 001371 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDE--ATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1091)
Q Consensus 517 ge~G~~LSGGQkQRialARAll~~~~IliLDE--~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~ 594 (1091)
+.....+||+++-++.+++..+++|+++++|| |+..+|....+.+.++++ .++++|+++|.-..-..+|+|..+.
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~ 149 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRP 149 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccC
Confidence 44445699999999999999999999999999 444555555555555552 4789999999965556799999999
Q ss_pred CCEEeee
Q 001371 595 RGKIVEK 601 (1091)
Q Consensus 595 ~G~Ive~ 601 (1091)
+|+|.+.
T Consensus 150 ~~~i~~~ 156 (174)
T PRK13695 150 GGRVYEL 156 (174)
T ss_pred CcEEEEE
Confidence 9999886
No 465
>PRK14079 recF recombination protein F; Provisional
Probab=99.12 E-value=1.3e-09 Score=124.50 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=61.0
Q ss_pred CCCChHHHHHHHHHHHhh---------cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEE
Q 001371 521 TQLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA 591 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll---------~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Ii 591 (1091)
.-+|+||+++++||+.|. .+|||++||||+|.||......+.+.|.+. ..+.|..|+ .-.-+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~--~q~~it~t~---~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL--PQAIVAGTE---APPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC--CcEEEEcCC---CCCCCceEE
Confidence 357999999999999998 899999999999999999888887777543 244444443 335699999
Q ss_pred EEeCCEEeee
Q 001371 592 VIHRGKIVEK 601 (1091)
Q Consensus 592 vl~~G~Ive~ 601 (1091)
++++|++...
T Consensus 337 ~~~~~~~~~~ 346 (349)
T PRK14079 337 RIEAGVFTPE 346 (349)
T ss_pred EEeccEecCC
Confidence 9999987543
No 466
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=8.5e-10 Score=126.35 Aligned_cols=63 Identities=27% Similarity=0.413 Sum_probs=55.9
Q ss_pred CCCChHHHHHHHHHHHhhc---------CCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhh
Q 001371 521 TQLSGGQKQRIAIARAILK---------DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR 585 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll~---------~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~ 585 (1091)
..+|.||+++++||.++.. +|||||||||+|.||+...+.+.+.|.+. +.++++.||.+..+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 3689999999999999999 99999999999999999988888888653 579999999987654
No 467
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.09 E-value=2e-10 Score=125.62 Aligned_cols=171 Identities=25% Similarity=0.394 Sum_probs=121.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEE-----------ECCccccCC----ChHHHhh--ceeEEeccCccc
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGINLKEF----QLQWIRK--KIGLVSQEPVLF 472 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~-----------idg~~i~~~----~~~~lr~--~ia~V~Q~~~Lf 472 (1091)
+||+..++||.+|-||||-++.|+|-.+|.-|.-. ..|-.+.++ ..+.++. ..-||.|-|-.-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 48999999999999999999999999999877532 111111111 1112221 234566666666
Q ss_pred cccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCC
Q 001371 473 TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1091)
Q Consensus 473 ~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSa 552 (1091)
.+++++++.--. +.+...++++.-+|...+. -++ ..||||+-||.|||-+..+++|++++|||.|-
T Consensus 178 k~~v~~~l~~~~---~r~~~~~~~~~~~L~~~~~-------re~----~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 178 KGTVGSLLDRKD---ERDNKEEVCDQLDLNNLLD-------REV----EQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHHHh---hcccHHHHHHHHHHhhHHH-------hhh----hhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 778888774221 1223344454444433322 222 46999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCeEEEEe
Q 001371 553 LDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIH 594 (1091)
Q Consensus 553 LD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~ 594 (1091)
||....-.--..|+.+. .++=+|+|-|.|+.+.. .|.|-+|-
T Consensus 244 LDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 244 LDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred chHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 99988777777787765 57899999999998875 78887774
No 468
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.07 E-value=3.6e-10 Score=119.92 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=86.1
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc-cCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHH
Q 001371 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1091)
Q Consensus 399 ~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g-~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIr 477 (1091)
.++.+|++|.+++|++++|.||+|+||||+++.+.+ .+.++.|.....- +-+++|.+|= +..-..+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-----------~~~~~~~~~i--~~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-----------SATLSIFDSV--LTRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-----------ceEEeccceE--EEEecCc
Confidence 478999999999999999999999999999999999 7788888765432 1134444332 1111223
Q ss_pred HHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHh
Q 001371 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557 (1091)
Q Consensus 478 eNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~t 557 (1091)
|++.-|...+ ..|+.+..+. ++ -..+++++|||||.++.|+..
T Consensus 85 d~~~~~~StF-~~e~~~~~~i------l~------------------------------~~~~~sLvllDE~~~gT~~~d 127 (222)
T cd03287 85 DSIQHGMSTF-MVELSETSHI------LS------------------------------NCTSRSLVILDELGRGTSTHD 127 (222)
T ss_pred cccccccchH-HHHHHHHHHH------HH------------------------------hCCCCeEEEEccCCCCCChhh
Confidence 3332221111 1122221111 11 124789999999966666553
Q ss_pred HHH----HHHHHHHHcCCCeEEEEccCchhhhcc
Q 001371 558 EKV----VQEALDRIMVNRTTVIVAHRLSTVRNA 587 (1091)
Q Consensus 558 e~~----i~~~l~~~~~~~T~I~ItHrls~i~~a 587 (1091)
... +.+.+.+. .+.|+|++||..+.....
T Consensus 128 ~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 128 GIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 333 33333332 368999999998875443
No 469
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.06 E-value=1.8e-10 Score=143.04 Aligned_cols=144 Identities=17% Similarity=0.228 Sum_probs=97.2
Q ss_pred cEEEEeEEEECCCCCCCccccc-----eeEEeeCC-CEEEEEcCCCCcHHHHHHHHhcc-CCCCCcEEEECCccccCCCh
Q 001371 383 DIELRDVYFSYPARPNEQIFSG-----FSISISSG-TTAALVGQSGSGKSTVISLIERF-YDPQAGEVLIDGINLKEFQL 455 (1091)
Q Consensus 383 ~I~~~~vsf~Y~~~~~~~vL~~-----isl~i~~G-~~vaIVG~sGsGKSTLl~ll~g~-~~~~~G~I~idg~~i~~~~~ 455 (1091)
.+.++++.. |.+++ +|+++.++ +.++|+||+|+||||+++.+.+. +-+..|
T Consensus 295 ~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-------------- 352 (771)
T TIGR01069 295 KIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-------------- 352 (771)
T ss_pred CEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------------
Confidence 577776543 34433 78888877 99999999999999999999987 333333
Q ss_pred HHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHH
Q 001371 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1091)
Q Consensus 456 ~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialAR 535 (1091)
.+||..+.. .-.+.+++... ..++ + .+.++-.+||+|++|+..|++
T Consensus 353 -------~~Vpa~~~~-~~~~~d~i~~~---i~~~------------~-----------si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 353 -------IPIPANEHS-EIPYFEEIFAD---IGDE------------Q-----------SIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred -------CCccCCccc-cccchhheeee---cChH------------h-----------HHhhhhhHHHHHHHHHHHHHH
Confidence 144444320 00122232210 1111 0 112234579999999999999
Q ss_pred HhhcCCCEEEeeCCCCCCCHHhHHHHHH-HHHHHc-CCCeEEEEccCchh
Q 001371 536 AILKDPRILLLDEATSALDAESEKVVQE-ALDRIM-VNRTTVIVAHRLST 583 (1091)
Q Consensus 536 All~~~~IliLDE~tSaLD~~te~~i~~-~l~~~~-~~~T~I~ItHrls~ 583 (1091)
++ .+|+++|||||++++|+.....+.. .+..+. ++.++|++||....
T Consensus 399 ~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 399 KT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred hc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 87 7899999999999999997776643 444432 47899999998764
No 470
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.03 E-value=1.2e-09 Score=128.94 Aligned_cols=111 Identities=34% Similarity=0.505 Sum_probs=89.5
Q ss_pred HHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCC--CEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEcc
Q 001371 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAH 579 (1091)
Q Consensus 503 ~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~--~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItH 579 (1091)
.|+...--||-|.= ..-.+||||+.|||-||+.+-++= =+|+||||+.+|-+.--+.+.+.|+++. .|.|+|+|-|
T Consensus 463 ~fL~~VGL~YLtL~-R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEH 541 (935)
T COG0178 463 GFLVDVGLGYLTLS-RSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEH 541 (935)
T ss_pred HHHHHcCcCccccc-ccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEec
Confidence 45555544666643 344689999999999999998764 4899999999999884445556666654 5899999999
Q ss_pred CchhhhccCeEEEE------eCCEEeeecChhHHhcCCCch
Q 001371 580 RLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDPEGA 614 (1091)
Q Consensus 580 rls~i~~aD~Iivl------~~G~Ive~Gt~~eL~~~~~~~ 614 (1091)
..++++.||+|+=| ..|+|+.+||++|++++++..
T Consensus 542 Dedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~Sl 582 (935)
T COG0178 542 DEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESL 582 (935)
T ss_pred CHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcch
Confidence 99999999999998 579999999999999985443
No 471
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.01 E-value=8e-08 Score=109.96 Aligned_cols=308 Identities=12% Similarity=0.052 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCC-CCChhhHHhHHhhhHHHHHHHhhhh
Q 001371 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEP-EHSSGAIGARLSADAASVRALVGDA 840 (1091)
Q Consensus 762 ~~~~~y~~l~~~~~i~~~~~~~~~~~~~~~~s~~Lh~~~~~~vl~~p~sFFD~~-~tp~GrilnRfs~D~~~id~~l~~~ 840 (1091)
.|+..+.++.....+..+....+..+.-.+..+-+|...|+.--.--|+=-|.. +||- .|+++|++..-..+.+-
T Consensus 127 ~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPD----QrltqDv~kf~~~l~sl 202 (659)
T KOG0060|consen 127 KYVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPD----QRLTQDVEKFCRQLSSL 202 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChH----HHHhHHHHHHHHHHHHH
Confidence 345555566666666666666666666777888888888876555555544432 3443 35666765544443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---------HHHHHhhhhHHHHHHHHHHHhHHHHHHcc
Q 001371 841 LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT---------QMKFMKGFSADAKMKYEEASQVANDAVGS 911 (1091)
Q Consensus 841 l~~~~~~~~~~~~~~i~~~~~~w~l~l~~i~~~pl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~e~l~g 911 (1091)
...++ .....++.+.|++.=..=+..|..+.++++ .+...+...+.++++..=|-.+ ++...|
T Consensus 203 ----~s~l~---~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h-~rlr~N 274 (659)
T KOG0060|consen 203 ----YSNLL---KAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKH-SRLRVN 274 (659)
T ss_pred ----HHhhh---ccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhhe-eeeeec
Confidence 22222 111122233333311111222333333222 2223333344455554444332 234444
Q ss_pred chHhhhccchHHH----HHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhc----cCCcCHHHH
Q 001371 912 IRTVASFCAEEKV----MQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAG-ARLVE----DGKATFSDV 982 (1091)
Q Consensus 912 l~TIra~~~e~~f----~~~~~~~l~~~~~~~~r~~~~~~~~~g~~~~~~~~~~a~~~~~g-~~li~----~g~~~~~~~ 982 (1091)
-..|.-|+.+..- ..+|+.+.+.... .+..-.++++....+-.+-++.-|+- +.-+. .+.++...+
T Consensus 275 aE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~-----l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL 349 (659)
T KOG0060|consen 275 AEEIAFYRGGQVEHQRTDQRFRNLVQHLRE-----LMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAEL 349 (659)
T ss_pred chhhhhhccCchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHH
Confidence 5566677775432 3345555444333 22223445555555543222222211 01111 223333344
Q ss_pred HHHHH----HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcC---------C----CCCCCCCCCC-------Ccccc
Q 001371 983 FKVFF----SLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDR---------E----SKIDPSDESG-------TILED 1038 (1091)
Q Consensus 983 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~i~~---------~----~~~~~~~~~~-------~~~~~ 1038 (1091)
+..+. .+..-..+++...-...+..+......|+-+.++. + ++...+..+. ...++
T Consensus 350 ~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~ 429 (659)
T KOG0060|consen 350 SGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEP 429 (659)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCccccc
Confidence 33221 11111223333333445555555555555443320 0 0111111111 11223
Q ss_pred cceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCcccc
Q 001371 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQL 1087 (1091)
Q Consensus 1039 ~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~ 1087 (1091)
..-.|+|++|++.=|++ +....+|+||+|+.|+++-|.||||||||.|
T Consensus 430 ~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSL 477 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSL 477 (659)
T ss_pred ccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHH
Confidence 35689999999999876 3335567999999999999999999999987
No 472
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.99 E-value=7.6e-10 Score=124.45 Aligned_cols=143 Identities=15% Similarity=0.222 Sum_probs=99.0
Q ss_pred eeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCC
Q 001371 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK 484 (1091)
Q Consensus 405 isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~ 484 (1091)
+++.+++|+.++|+||+||||||++++|++++++..|.+.++ |..++.+.. +..+.++.+. +-. +.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~----------~~~-~~ 202 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSK----------GGQ-GL 202 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecC----------CCC-Cc
Confidence 557788999999999999999999999999999999988875 344443322 1222221110 000 01
Q ss_pred CCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHH
Q 001371 485 DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564 (1091)
Q Consensus 485 ~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~ 564 (1091)
...+. .=.++++|-.+|+++++|||.+ .+ ..+.
T Consensus 203 ~~~~~----------------------------------------~~~l~~~Lr~~pd~ii~gE~r~---~e----~~~~ 235 (308)
T TIGR02788 203 AKVTP----------------------------------------KDLLQSCLRMRPDRIILGELRG---DE----AFDF 235 (308)
T ss_pred CccCH----------------------------------------HHHHHHHhcCCCCeEEEeccCC---HH----HHHH
Confidence 11111 1245567778999999999996 22 2334
Q ss_pred HHHHcCCC-eEEEEccCchhhhccCeEEEEeCCEEeeecChhHHh
Q 001371 565 LDRIMVNR-TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1091)
Q Consensus 565 l~~~~~~~-T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~ 608 (1091)
++....|. +++..+|..+.....||+..|..|++...|...|.+
T Consensus 236 l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 236 IRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 44443444 568899999988889999999999999888887776
No 473
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.98 E-value=5.3e-09 Score=112.40 Aligned_cols=144 Identities=19% Similarity=0.286 Sum_probs=81.8
Q ss_pred eeCCCEEEEEcCCCCcHHHH-HHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHh-ccCCCC
Q 001371 409 ISSGTTAALVGQSGSGKSTV-ISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI-AYGKDD 486 (1091)
Q Consensus 409 i~~G~~vaIVG~sGsGKSTL-l~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI-~~g~~~ 486 (1091)
+++|+.+.|+|++||||||+ ++.+.+..++... +.|++.+-. ...+.++. .+|.+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~--------------------~~yi~~e~~--~~~~~~~~~~~g~~- 77 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS--------------------VSYVSTQLT--TTEFIKQMMSLGYD- 77 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc--------------------EEEEeCCCC--HHHHHHHHHHhCCc-
Confidence 78999999999999999999 6888888764333 334432211 11112221 12221
Q ss_pred CCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhc----CCCEEEeeCCCCCC----CHHhH
Q 001371 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK----DPRILLLDEATSAL----DAESE 558 (1091)
Q Consensus 487 ~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~----~~~IliLDE~tSaL----D~~te 558 (1091)
. ++. +.. |.--.+ +-...+|++++++-.++|.+-. +|+++++||||+.+ |+...
T Consensus 78 ~--~~~------------~~~---~~l~~~-~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~ 139 (230)
T PRK08533 78 I--NKK------------LIS---GKLLYI-PVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAV 139 (230)
T ss_pred h--HHH------------hhc---CcEEEE-EecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHH
Confidence 1 110 000 000000 0002367776666555554433 69999999999999 66666
Q ss_pred HHHHHHHHHHcC-CCeEEEEccCchhh--------hc-cCeEEEEe
Q 001371 559 KVVQEALDRIMV-NRTTVIVAHRLSTV--------RN-ADMIAVIH 594 (1091)
Q Consensus 559 ~~i~~~l~~~~~-~~T~I~ItHrls~i--------~~-aD~Iivl~ 594 (1091)
+.+.+.++++.+ ++|+ ++||....+ .. ||-|+.|+
T Consensus 140 ~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 140 NDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 677777776643 5655 455654432 11 46666665
No 474
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.92 E-value=6.5e-10 Score=126.63 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=55.6
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCc-EEEECCccccCCChHHHhhceeEEeccC
Q 001371 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGINLKEFQLQWIRKKIGLVSQEP 469 (1091)
Q Consensus 400 ~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G-~I~idg~~i~~~~~~~lr~~ia~V~Q~~ 469 (1091)
.+|++|||++++||.++|+||||||||||++ .|..+|++| +|.+||.++...+...++.-= +|.|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 5899999999999999999999999999999 778888888 799999999876654433211 677763
No 475
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.90 E-value=2.7e-09 Score=133.14 Aligned_cols=137 Identities=13% Similarity=0.153 Sum_probs=89.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee-EEeccCccccccHHHH
Q 001371 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG-LVSQEPVLFTGSIKDN 479 (1091)
Q Consensus 401 vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia-~V~Q~~~Lf~~TIreN 479 (1091)
|=+|+++. +.+..+.|.||+++||||+++.+.-.. +=.++| +||-+.. ..-++.++
T Consensus 317 Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~---------------------~maq~G~~vpa~~~-~~i~~~~~ 373 (782)
T PRK00409 317 VPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAA---------------------LMAKSGLPIPANEP-SEIPVFKE 373 (782)
T ss_pred ECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHH---------------------HHHHhCCCcccCCC-ccccccce
Confidence 33444443 345679999999999999999885221 111233 4444310 01122233
Q ss_pred hccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHH
Q 001371 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559 (1091)
Q Consensus 480 I~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~ 559 (1091)
|..- -|++-.+..+-.++|+|++|+..|+|++ .+|+++|||||++++|+....
T Consensus 374 i~~~--------------------------ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ 426 (782)
T PRK00409 374 IFAD--------------------------IGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGA 426 (782)
T ss_pred EEEe--------------------------cCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHH
Confidence 3210 0222223344568999999999999999 899999999999999999777
Q ss_pred HHHHH-HHHHc-CCCeEEEEccCchhhhcc
Q 001371 560 VVQEA-LDRIM-VNRTTVIVAHRLSTVRNA 587 (1091)
Q Consensus 560 ~i~~~-l~~~~-~~~T~I~ItHrls~i~~a 587 (1091)
.+..+ +..+. ++.++|++||.......+
T Consensus 427 ala~aile~l~~~~~~vIitTH~~el~~~~ 456 (782)
T PRK00409 427 ALAISILEYLRKRGAKIIATTHYKELKALM 456 (782)
T ss_pred HHHHHHHHHHHHCCCEEEEECChHHHHHHH
Confidence 66544 43332 478999999998876553
No 476
>PRK01156 chromosome segregation protein; Provisional
Probab=98.90 E-value=2.8e-09 Score=138.01 Aligned_cols=76 Identities=22% Similarity=0.404 Sum_probs=66.4
Q ss_pred CCCCCChHHHHHHHH------HHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC---C-CeEEEEccCchhhhccC
Q 001371 519 HGTQLSGGQKQRIAI------ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV---N-RTTVIVAHRLSTVRNAD 588 (1091)
Q Consensus 519 ~G~~LSGGQkQRial------ARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~---~-~T~I~ItHrls~i~~aD 588 (1091)
....||||||||+|| ||+++++|++++|||||++||+.....+.+.+...++ + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 457899999999975 5999999999999999999999988888887764332 2 48999999999999999
Q ss_pred eEEEEe
Q 001371 589 MIAVIH 594 (1091)
Q Consensus 589 ~Iivl~ 594 (1091)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 477
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.89 E-value=1.2e-08 Score=106.55 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=60.6
Q ss_pred CcccccccCCCCCChHHHH-----HHHHHHH-hhcCCCEEEeeCCCCCCC---HHhHHHHHHHHHHHc-CCCeEEEEccC
Q 001371 511 GIDTLVGEHGTQLSGGQKQ-----RIAIARA-ILKDPRILLLDEATSALD---AESEKVVQEALDRIM-VNRTTVIVAHR 580 (1091)
Q Consensus 511 G~~T~vge~G~~LSGGQkQ-----RialARA-ll~~~~IliLDE~tSaLD---~~te~~i~~~l~~~~-~~~T~I~ItHr 580 (1091)
|....+......+|+||+| +..+.++ .-.+|+++++|||++.+| ......+.+.++.+. .+.|+|+++|.
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444445555678999999 3444444 456899999999999999 656666666665543 47899999998
Q ss_pred chh---------hh-ccCeEEEEe
Q 001371 581 LST---------VR-NADMIAVIH 594 (1091)
Q Consensus 581 ls~---------i~-~aD~Iivl~ 594 (1091)
... +. .||.|+.|+
T Consensus 140 ~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ccCCCcccCcCceeEeeeEEEEEE
Confidence 764 33 489999997
No 478
>PRK03918 chromosome segregation protein; Provisional
Probab=98.85 E-value=5e-09 Score=136.03 Aligned_cols=74 Identities=28% Similarity=0.437 Sum_probs=66.1
Q ss_pred CCCChHHHH------HHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEccCchhhhccCeEEEE
Q 001371 521 TQLSGGQKQ------RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVI 593 (1091)
Q Consensus 521 ~~LSGGQkQ------RialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~aD~Iivl 593 (1091)
..||||||| |+||||++..+|+++||||||++||+.....+.+.|..+.. +.|+|+|||+......||+|++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 479999999 56667789999999999999999999999999988887643 57999999999988889999999
Q ss_pred e
Q 001371 594 H 594 (1091)
Q Consensus 594 ~ 594 (1091)
+
T Consensus 867 ~ 867 (880)
T PRK03918 867 S 867 (880)
T ss_pred E
Confidence 7
No 479
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.84 E-value=5.7e-09 Score=109.66 Aligned_cols=119 Identities=24% Similarity=0.336 Sum_probs=77.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC-CcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHH
Q 001371 414 TAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEI 492 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~~~-~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i 492 (1091)
.+.|+||+||||||+++.|++.+++. .|.|..-..++. +... ...+++.|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q------------------------- 53 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQ------------------------- 53 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeee-------------------------
Confidence 68999999999999999999998754 566654432221 1000 00011111
Q ss_pred HHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCC
Q 001371 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572 (1091)
Q Consensus 493 ~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~ 572 (1091)
.++|.+...++. ++++|+..+|+++++||+. |.++-. .+++....|+
T Consensus 54 ---------------------~~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~---~~l~~a~~G~ 100 (198)
T cd01131 54 ---------------------REVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIR---LALTAAETGH 100 (198)
T ss_pred ---------------------cccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHH---HHHHHHHcCC
Confidence 112222222221 4889999999999999996 555433 3343344688
Q ss_pred eEEEEccCchhhhccCeEEEEe
Q 001371 573 TTVIVAHRLSTVRNADMIAVIH 594 (1091)
Q Consensus 573 T~I~ItHrls~i~~aD~Iivl~ 594 (1091)
+++.++|..+.....||++.|-
T Consensus 101 ~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 101 LVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred EEEEEecCCcHHHHHhHHHhhc
Confidence 9999999999988899987773
No 480
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.79 E-value=6.5e-09 Score=139.87 Aligned_cols=75 Identities=25% Similarity=0.342 Sum_probs=68.5
Q ss_pred CCCCCChHHHHHHHHHHHh----hcCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEE
Q 001371 519 HGTQLSGGQKQRIAIARAI----LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1091)
Q Consensus 519 ~G~~LSGGQkQRialARAl----l~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl 593 (1091)
....||||||||++|||++ +++||++||||||++||+.+...+.+.|..+.++.|+|+|||++..+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 4457999999999999998 57889999999999999999999999998887778999999999999999999765
No 481
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=1.2e-08 Score=133.34 Aligned_cols=76 Identities=24% Similarity=0.235 Sum_probs=68.3
Q ss_pred CCCChHHHHHHHHHHHhhc----------CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cC
Q 001371 521 TQLSGGQKQRIAIARAILK----------DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-AD 588 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll~----------~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD 588 (1091)
.+||||+++|++||+||.. +|++|+|||||++||+.+...+.+.|.++. .|+|+++|||....... +|
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~ 1028 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPH 1028 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCC
Confidence 6899999999999999985 799999999999999999999999998764 57899999999988754 99
Q ss_pred eEEEEeCC
Q 001371 589 MIAVIHRG 596 (1091)
Q Consensus 589 ~Iivl~~G 596 (1091)
+|+|++.|
T Consensus 1029 ~i~v~~~~ 1036 (1042)
T TIGR00618 1029 RILVKKTN 1036 (1042)
T ss_pred EEEEEECC
Confidence 99999754
No 482
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.79 E-value=5.5e-08 Score=123.02 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=57.8
Q ss_pred hhcCCCEEEeeCCCCCC-CHHhHHHHHHHHHHHc-CCCeEEEEccCchhh----------hccCeEEEEeCCEEeeecC
Q 001371 537 ILKDPRILLLDEATSAL-DAESEKVVQEALDRIM-VNRTTVIVAHRLSTV----------RNADMIAVIHRGKIVEKGT 603 (1091)
Q Consensus 537 ll~~~~IliLDE~tSaL-D~~te~~i~~~l~~~~-~~~T~I~ItHrls~i----------~~aD~Iivl~~G~Ive~Gt 603 (1091)
+..+|+++++|||+++| |+...+.+.+.+++.. ++.++|++||+++.+ ..||..++|.+|++.+.|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 35799999999999999 6888889998888764 478999999999876 4799999999999877664
No 483
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.77 E-value=1.9e-08 Score=113.21 Aligned_cols=82 Identities=11% Similarity=0.199 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhccCCCCCcCCCCCcccCCCCCcEEEEeEEEECCCCCCCcccc-----------ceeEEeeCCCEEEEE
Q 001371 350 GQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFS-----------GFSISISSGTTAALV 418 (1091)
Q Consensus 350 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~-----------~isl~i~~G~~vaIV 418 (1091)
...+.+|++++++.++... ..++...+.++|+||+|.||+ ++++|+ |+++.|.+||+++||
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~------~~~e~~~~ri~Fe~LTf~YP~--er~~Le~~~~~~~~R~id~~~pig~Gq~~~Iv 174 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNG------DDPEKAKNRVLFENLTPLYPN--ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIV 174 (415)
T ss_pred ccccHhHHHHHhCCCccCC------CCccccCCCeEEEEeeecCCC--ccceeecCccccceeeeeeEEEeCCCCEEEEE
Confidence 3456789999988765421 112334568999999999985 347896 999999999999999
Q ss_pred cCCCCcHHHHHHHHhccCCCC
Q 001371 419 GQSGSGKSTVISLIERFYDPQ 439 (1091)
Q Consensus 419 G~sGsGKSTLl~ll~g~~~~~ 439 (1091)
||+|||||||+++|.+.+...
T Consensus 175 G~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 175 APPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCCChhHHHHHHHHhhccc
Confidence 999999999999999998654
No 484
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.76 E-value=5.9e-08 Score=98.53 Aligned_cols=129 Identities=18% Similarity=0.170 Sum_probs=77.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCHHHHH
Q 001371 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493 (1091)
Q Consensus 414 ~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~ 493 (1091)
.++|.||+|+||||+++.+++...+..|.+. |++++...- ..+++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~-------------------~~~~e~~~~--~~~~~~~~~---------- 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVV-------------------YVDIEEEIE--ELTERLIGE---------- 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEE-------------------EEECCcchH--HHHHHHhhh----------
Confidence 3789999999999999999998877555544 444332210 111111000
Q ss_pred HHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCH----------HhHHHHHH
Q 001371 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA----------ESEKVVQE 563 (1091)
Q Consensus 494 ~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~----------~te~~i~~ 563 (1091)
. ....+++ ...+.......+.++.++++.+++...+|+++++||+++-+|. ...+.+.+
T Consensus 50 --------~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (165)
T cd01120 50 --------S--LKGALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE 118 (165)
T ss_pred --------h--hcccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 0 0000111 1122222233455666788999999999999999999965544 33344444
Q ss_pred HHHHHc-CCCeEEEEccCchhh
Q 001371 564 ALDRIM-VNRTTVIVAHRLSTV 584 (1091)
Q Consensus 564 ~l~~~~-~~~T~I~ItHrls~i 584 (1091)
.+.... .+.|+|+++|.....
T Consensus 119 l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 119 LLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHhcCCceEEEEEecCCcc
Confidence 443333 378999999987544
No 485
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.73 E-value=2.1e-08 Score=106.34 Aligned_cols=78 Identities=26% Similarity=0.357 Sum_probs=64.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC------------CCCcEEEECCccccCCChHHHhhceeEEeccCccccccHH
Q 001371 410 SSGTTAALVGQSGSGKSTVISLIERFYD------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1091)
Q Consensus 410 ~~G~~vaIVG~sGsGKSTLl~ll~g~~~------------~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIr 477 (1091)
++|++++|+||||||||||+++|.+.++ |..|+ ++|.|+..++.+.+++.+ .|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999986 77888 699999999988888754 588899999999
Q ss_pred HHhccCCCCCCHHHHHHHH
Q 001371 478 DNIAYGKDDATTEEIRVAT 496 (1091)
Q Consensus 478 eNI~~g~~~~~~~~i~~a~ 496 (1091)
+|. ||.+ .+.+..++
T Consensus 78 ~~~-y~~~---~~~i~~~l 92 (205)
T PRK00300 78 GNY-YGTP---RSPVEEAL 92 (205)
T ss_pred Ccc-ccCc---HHHHHHHH
Confidence 884 5643 44454443
No 486
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.73 E-value=4.5e-08 Score=112.61 Aligned_cols=168 Identities=17% Similarity=0.195 Sum_probs=116.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhcee
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia 463 (1091)
++-++++-.|+. ...+++++ |++.+||+++|+|++|+|||||++.|+|..+|+.|.|.+.|.
T Consensus 131 ~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGe--------------- 192 (432)
T PRK06793 131 FEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGE--------------- 192 (432)
T ss_pred hheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCC---------------
Confidence 455666666643 34577775 999999999999999999999999999999998887766553
Q ss_pred EEeccCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhh-----
Q 001371 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL----- 538 (1091)
Q Consensus 464 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll----- 538 (1091)
+. .+++|.+. +.++..++. .|.+=-.-.+-|.|+|+|.+.+.+..
T Consensus 193 ----rg----~ev~e~~~------------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr 242 (432)
T PRK06793 193 ----RG----REVKDFIR------------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFR 242 (432)
T ss_pred ----Cc----ccHHHHHH------------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22 23333321 111111111 12222344678999999999999887
Q ss_pred --cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhccCeEEEEeCCEEeeecCh
Q 001371 539 --KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1091)
Q Consensus 539 --~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~ 604 (1091)
.++-++++||+|...|+. +.|-..+.+.- .|.|..+-+|-.+.++.|-+ .++|.|...++-
T Consensus 243 ~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~tv 306 (432)
T PRK06793 243 DQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYTV 306 (432)
T ss_pred HcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEEE
Confidence 678899999999999997 45555554433 46788888884445556655 478888766554
No 487
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.71 E-value=2.5e-07 Score=90.99 Aligned_cols=117 Identities=33% Similarity=0.437 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCC-cEEEECCccccCCChHHHhhceeEEeccCccccccHHHHhccCCCCCCH
Q 001371 411 SGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATT 489 (1091)
Q Consensus 411 ~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~-G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI~~g~~~~~~ 489 (1091)
++..+.|+||+|+||||+++.|++.+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999987765 4555554322111111100
Q ss_pred HHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCHHhHHHHHH------
Q 001371 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE------ 563 (1091)
Q Consensus 490 ~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~~te~~i~~------ 563 (1091)
.....+......+++.++..+++|-..+++++++||+....+.........
T Consensus 51 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 -----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred -----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 233444556788999999999999999999999999999999887665543
Q ss_pred -HHHHHcCCCeEEEEccC
Q 001371 564 -ALDRIMVNRTTVIVAHR 580 (1091)
Q Consensus 564 -~l~~~~~~~T~I~ItHr 580 (1091)
.......+..+|.++|.
T Consensus 108 ~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 108 LLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHhcCCCEEEEEeCC
Confidence 22233455677777774
No 488
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.70 E-value=5.4e-05 Score=84.19 Aligned_cols=215 Identities=10% Similarity=0.059 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 66 IGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKT 145 (1091)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 145 (1091)
++.++..........+-+.+.+.+... +.+.+ ......++++++...++.....++...++.+....+-..+.++
T Consensus 34 ~l~l~~~~lsv~~~~~~g~~~~aL~~~-d~~~f----~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~ 108 (281)
T PF06472_consen 34 LLLLARVYLSVRINFWNGDFYNALQQK-DLQAF----WRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDR 108 (281)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhc-CHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555566667777766543 33222 2233344555555666666666666667777777777777777
Q ss_pred HHcCCchhhhccCC---ccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH
Q 001371 146 ILRQDVAFFDNETN---TGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG-WLLTLVMLSSIPLLAMSG 221 (1091)
Q Consensus 146 ll~~~~~~~~~~~~---~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~l~~l~~~pl~~~~~ 221 (1091)
-++-. .||.-... .-..=.|++.|++.+-+........++.+++.++.....+..++ +...+++++...+...+.
T Consensus 109 yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~ 187 (281)
T PF06472_consen 109 YLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLIT 187 (281)
T ss_pred HcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 77665 56643212 23455699999999999999988889998888877766665544 444447777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 222 GVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLA 286 (1091)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 286 (1091)
.++++...+...+.++..++.-.......++-+.|-.|+.|+.+.++.++..++..+...+....
T Consensus 188 ~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~ 252 (281)
T PF06472_consen 188 HWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRR 252 (281)
T ss_pred HHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888899999999999999999999999999988887777766554444433
No 489
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.68 E-value=4.3e-09 Score=129.52 Aligned_cols=171 Identities=13% Similarity=0.105 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001371 232 SSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNY-----KKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSV 306 (1091)
Q Consensus 232 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (1091)
............+.+.|++.++.+||..+.|......| ........+...+..........+...+......+++
T Consensus 32 ~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il 111 (644)
T PRK10733 32 VDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLL 111 (644)
T ss_pred CCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHH
Confidence 33344444567788889999999999998887654444 3334444443333333322233333344445566777
Q ss_pred HHHHHHHHhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCCCc
Q 001371 307 WYGGKLILEEGYNGG---QVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGD 383 (1091)
Q Consensus 307 ~~g~~l~~~~~~t~g---~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (1091)
|+|.+++..+.++.| .++++.........+ ..+...+..+.....+..++.++.+...+. .
T Consensus 112 ~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~-------~-------- 175 (644)
T PRK10733 112 LIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREP-------S-------- 175 (644)
T ss_pred HHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCH-------H--------
Confidence 889999999988887 444432221111111 222223333433344444554444321110 0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001371 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1091)
Q Consensus 384 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~ 437 (1091)
..+++..++++| +.++||+|+||||+++++.+...
T Consensus 176 -----------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 -----------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred -----------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 001122245566 99999999999999999998764
No 490
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.68 E-value=2.8e-08 Score=133.55 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=68.4
Q ss_pred CCCChHHHHHHHHHHHhh----cCCCEEEeeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEccCchhhhccCeEEEEe
Q 001371 521 TQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1091)
Q Consensus 521 ~~LSGGQkQRialARAll----~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~ 594 (1091)
..||||||++++||+++. ++||++|||||+++||+.....+.+.|..+.++.++|+|||+..++..||+++.+.
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~ 1150 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVT 1150 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEE
Confidence 479999999999999996 58899999999999999999999999988877788999999999999999999875
No 491
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.62 E-value=8.3e-08 Score=101.68 Aligned_cols=138 Identities=18% Similarity=0.235 Sum_probs=83.3
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CcEEEECCccccCCChHHHhhceeEEeccCcccc-cc
Q 001371 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GS 475 (1091)
Q Consensus 398 ~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~-~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~-~T 475 (1091)
+.+|-+|++|++++|++++|.||+|+||||+++.+....-.. -|.- +-. + +.+++++ ..+|. -.
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-vpa--------~--~~~i~~~---~~i~~~~~ 81 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-VPA--------K--SMRLSLV---DRIFTRIG 81 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc-cCc--------c--ccEeccc---cEEEEecC
Confidence 347889999999999999999999999999998887542111 1110 000 0 0012222 11222 23
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEeeCCCCCCCH
Q 001371 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1091)
Q Consensus 476 IreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLDE~tSaLD~ 555 (1091)
..||+..|...+. .|+.+. ...++. ..+|.++|||||.++.|+
T Consensus 82 ~~d~~~~~~StF~-~e~~~~------~~il~~------------------------------~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 82 ARDDIMKGESTFM-VELSET------ANILRH------------------------------ATPDSLVILDELGRGTST 124 (218)
T ss_pred cccccccCcchHH-HHHHHH------HHHHHh------------------------------CCCCeEEEEecccCCCCc
Confidence 4455543322111 122221 111111 146899999999999999
Q ss_pred HhHHHHHHH-HHHHcC--CCeEEEEccCchhhhc
Q 001371 556 ESEKVVQEA-LDRIMV--NRTTVIVAHRLSTVRN 586 (1091)
Q Consensus 556 ~te~~i~~~-l~~~~~--~~T~I~ItHrls~i~~ 586 (1091)
.....+..+ ++.+.+ +.++|++||.......
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 876666555 444443 7899999999887654
No 492
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=2.6e-08 Score=112.88 Aligned_cols=51 Identities=25% Similarity=0.312 Sum_probs=45.0
Q ss_pred cccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1037 ~~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
|+..|.|+|+||+++|+.. ..++|+|+||+|++||.+|||||+|||||+|-
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl 125 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFL 125 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHH
Confidence 4567999999999999643 23599999999999999999999999999874
No 493
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.61 E-value=4.8e-07 Score=98.10 Aligned_cols=137 Identities=16% Similarity=0.125 Sum_probs=80.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCcEEEECCccccCCChHHHhhceeEEeccCccccccHHHHh-ccCCCC
Q 001371 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI-AYGKDD 486 (1091)
Q Consensus 408 ~i~~G~~vaIVG~sGsGKSTLl~ll~g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q~~~Lf~~TIreNI-~~g~~~ 486 (1091)
-+|+|..+.|.|++|||||||...++-..-...+ .+.|+..+-.. ..+.+|. .+|-+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~-------------------~~~y~~~e~~~--~~~~~~~~~~g~~- 78 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGK-------------------KVYVITTENTS--KSYLKQMESVKID- 78 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCC-------------------EEEEEEcCCCH--HHHHHHHHHCCCC-
Confidence 4889999999999999999999887532211112 45555543211 1222222 12211
Q ss_pred CCHHHHHHHHHHcccHHHHhhCCCCcccccc---cCCCCCChHHHHHHHHHHHhhc--CCCEEEeeCCCCCCCHHhH---
Q 001371 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVG---EHGTQLSGGQKQRIAIARAILK--DPRILLLDEATSALDAESE--- 558 (1091)
Q Consensus 487 ~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vg---e~G~~LSGGQkQRialARAll~--~~~IliLDE~tSaLD~~te--- 558 (1091)
. + +++ ..|+-..+. +.....|.++++.+..++..+. +|+++++||||+.+|....
T Consensus 79 ~--~------------~~~---~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~ 141 (234)
T PRK06067 79 I--S------------DFF---LWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDI 141 (234)
T ss_pred h--h------------HHH---hCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHH
Confidence 1 1 111 011111100 1123457789999999999998 9999999999976554333
Q ss_pred HHHHHHHHHH-cCCCeEEEEccCchh
Q 001371 559 KVVQEALDRI-MVNRTTVIVAHRLST 583 (1091)
Q Consensus 559 ~~i~~~l~~~-~~~~T~I~ItHrls~ 583 (1091)
..+.+.++.+ .+++|+++++|....
T Consensus 142 ~~~l~~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 142 LNFLTEAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCCcC
Confidence 3333334432 357899999997653
No 494
>PRK02224 chromosome segregation protein; Provisional
Probab=98.55 E-value=1.3e-07 Score=122.83 Aligned_cols=76 Identities=29% Similarity=0.391 Sum_probs=65.6
Q ss_pred CCCChHHHH------HHHHHHHhhcC------CCEEEeeCCCCCCCHHhHHHHHHHHHHHcC-C-CeEEEEccCchhhhc
Q 001371 521 TQLSGGQKQ------RIAIARAILKD------PRILLLDEATSALDAESEKVVQEALDRIMV-N-RTTVIVAHRLSTVRN 586 (1091)
Q Consensus 521 ~~LSGGQkQ------RialARAll~~------~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~-~T~I~ItHrls~i~~ 586 (1091)
..||||||| |+|+||++..+ ++++||||||++||+.....+.+.|..+.. + .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999863 367999999999999988888888877643 3 479999999999999
Q ss_pred cCeEEEEeCC
Q 001371 587 ADMIAVIHRG 596 (1091)
Q Consensus 587 aD~Iivl~~G 596 (1091)
||++++|...
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999643
No 495
>PRK12369 putative transporter; Reviewed
Probab=98.54 E-value=0.0011 Score=74.78 Aligned_cols=241 Identities=10% Similarity=-0.027 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001371 107 VKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFL 186 (1091)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~ 186 (1091)
..++.+.++..++.....++......+...-+-+.++++-+...- .-|+ + =.|++.|+....+........++
T Consensus 67 ~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~~~~-~iDN--P----DQRI~EDi~~f~~~tl~l~~~~i 139 (326)
T PRK12369 67 LSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWRNKRD-NIEG--S----SQRIQEDTYRFAKIMESLGLSFL 139 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCC--c----cHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555556666566666666666666666665321 1122 2 27999999999998888888889
Q ss_pred HHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 001371 187 QLMATFLGGFLIAFIKGW------------LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIR 254 (1091)
Q Consensus 187 ~~~~~~i~~~~~~~~~~~------------~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ 254 (1091)
.++++++....++..++. .+..++++...+...+..++++++.+..-+.++..++.-..+.-.=++-+
T Consensus 140 ~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae 219 (326)
T PRK12369 140 RAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKK 219 (326)
T ss_pred HHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchh
Confidence 888888887777776552 22223333344444455566766666555544443333222211100110
Q ss_pred HHHHhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001371 255 TVASFTGE-KQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTG 333 (1091)
Q Consensus 255 ~ik~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~~ 333 (1091)
. | .| +...++|.+..+...+...+.........+ ...+..++-..+......+|.++.|.+..........
T Consensus 220 ~---~-~E~~~l~~~f~~v~~n~~~~~~~~~~l~~~~~~----y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v 291 (326)
T PRK12369 220 N---Y-AKPETLIELFTGLRFNYFRLFLHYGYFNIWLIS----FSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQV 291 (326)
T ss_pred h---h-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Confidence 0 1 22 233445555444444333333333222222 2222222223334556678999999998877766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001371 334 SMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1091)
Q Consensus 334 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1091)
..++..+...+..+..-.+..+|+.++.+
T Consensus 292 ~~als~~v~~y~~la~~~A~~~RL~~f~~ 320 (326)
T PRK12369 292 RSSFSVFIRNWTTITELRSIYKRLKEFEK 320 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888877653
No 496
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.53 E-value=0.00091 Score=76.90 Aligned_cols=240 Identities=8% Similarity=-0.047 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001371 107 VKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFL 186 (1091)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~ 186 (1091)
..++.+.++...+..+..++..+...+...-+-+.+.++=++.. ..| .-=.|++.|+.+..+........++
T Consensus 142 ~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~Wl~~r--~ie------nPDQRIqEDi~~F~~~tl~L~~~li 213 (409)
T PRK11098 142 GVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHWQKLR--HIE------GAAQRVQEDTMRFASTLENLGVSFI 213 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC------CccHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555666666666666555432 111 2357899999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHhHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchH
Q 001371 187 QLMATFLGGFLIAFIKGWL-------------LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSI 253 (1091)
Q Consensus 187 ~~~~~~i~~~~~~~~~~~~-------------l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi 253 (1091)
.++.+++..+.++..++.. |..++++...+...+..++++++.+..-+.++..++....+.-.=++.
T Consensus 214 ~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrena 293 (409)
T PRK11098 214 NAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDA 293 (409)
T ss_pred HHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhh
Confidence 8888888877777776643 233333334444445556677766665555554444433222111111
Q ss_pred HHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001371 254 RTVASFTGEK-QAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT 332 (1091)
Q Consensus 254 ~~ik~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~t~g~l~~~~~~~~~ 332 (1091)
+ +.|. ...++|.+..+...+...+.......... ...+..++-+.+......+|+++.|.+.........
T Consensus 294 E-----~~E~~~L~~~F~~V~~N~~rl~~~~~~l~~f~~~----y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~ 364 (409)
T PRK11098 294 D-----RATPPTVRELFSNVRKNYFRLYFHYMYFNIARIL----YLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQ 364 (409)
T ss_pred h-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 1 2232 23344444444444433333222222222 222222222333455677899999999887776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001371 333 GSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1091)
Q Consensus 333 ~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1091)
...+++.+...+..+..-.+..+|+.+..+.
T Consensus 365 V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 365 VRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888888777543
No 497
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.53 E-value=1e-07 Score=104.85 Aligned_cols=63 Identities=25% Similarity=0.388 Sum_probs=52.1
Q ss_pred CCChHHHHHHHHHHHhhcCC---CEEEeeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEccCchhh
Q 001371 522 QLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTV 584 (1091)
Q Consensus 522 ~LSGGQkQRialARAll~~~---~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i 584 (1091)
.+|.|+||.+.|+-+++..+ .++++|||-++|+|...+.+.+.|.+..+ +.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 46999999999999988776 89999999999999988888899987765 78899999998765
No 498
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.52 E-value=1.8e-07 Score=121.70 Aligned_cols=75 Identities=27% Similarity=0.323 Sum_probs=63.5
Q ss_pred CCCCChHHHHHHHHHHHhhc--------CCCEEEeeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCe
Q 001371 520 GTQLSGGQKQRIAIARAILK--------DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADM 589 (1091)
Q Consensus 520 G~~LSGGQkQRialARAll~--------~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~ 589 (1091)
-.+|||||+||++|||||.. +|++|+|||||++||+.+...+.+.|..+. .|+||++|||-...... ..+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 36899999999999999995 899999999999999999999999998874 67999999996555444 455
Q ss_pred EEEEe
Q 001371 590 IAVIH 594 (1091)
Q Consensus 590 Iivl~ 594 (1091)
|.|-.
T Consensus 1027 i~V~k 1031 (1047)
T PRK10246 1027 IKVKK 1031 (1047)
T ss_pred EEEEE
Confidence 55554
No 499
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.52 E-value=1.3e-06 Score=98.55 Aligned_cols=170 Identities=27% Similarity=0.381 Sum_probs=117.0
Q ss_pred EEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHh-ccCCCCCcEEEECCccccCCChHHHhhceeEEec
Q 001371 389 VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQ 467 (1091)
Q Consensus 389 vsf~Y~~~~~~~vL~~isl~i~~G~~vaIVG~sGsGKSTLl~ll~-g~~~~~~G~I~idg~~i~~~~~~~lr~~ia~V~Q 467 (1091)
|+|.-|++ -.+.+ +-||+| ++.|||.---|||||+++|. |-|+-.-| || |+.+--.+.
T Consensus 227 ve~~LP~~---g~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DG-----------RE~VVT~~~ 285 (448)
T PF09818_consen 227 VEIELPNG---GTVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DG-----------REFVVTDPD 285 (448)
T ss_pred EEEECCCC---CEEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CC-----------ceEEEECCC
Confidence 67777753 23444 578999 99999999999999999997 67765444 44 222211111
Q ss_pred cCccccccHHHHhccCCCCCCHHHHHHHHHHcccHHHHhhCCCCcccccccCCCCCChHHHHHHHHHHHhhcCCCEEEee
Q 001371 468 EPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547 (1091)
Q Consensus 468 ~~~Lf~~TIreNI~~g~~~~~~~~i~~a~~~a~l~~~i~~lp~G~~T~vge~G~~LSGGQkQRialARAll~~~~IliLD 547 (1091)
-.. || +.| -+..+.+++..||..||.|.||. ----.+=||---|=-.|..||=..+++||+|
T Consensus 286 avk-----ir---------AED---GR~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiD 347 (448)
T PF09818_consen 286 AVK-----IR---------AED---GRSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLLID 347 (448)
T ss_pred ceE-----EE---------ecC---CceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEEEc
Confidence 000 10 101 12346778899999999999987 3233467999999999999999999999999
Q ss_pred CCCCCC-----CHHhHHHH----------HHHHHHHc--CCCeEEEEccC-chhhhccCeEEEEeCCE
Q 001371 548 EATSAL-----DAESEKVV----------QEALDRIM--VNRTTVIVAHR-LSTVRNADMIAVIHRGK 597 (1091)
Q Consensus 548 E~tSaL-----D~~te~~i----------~~~l~~~~--~~~T~I~ItHr-ls~i~~aD~Iivl~~G~ 597 (1091)
|=|||- |...++.+ .+.++.+. .|-++|+|+-- =.++..||+|++||+=+
T Consensus 348 EDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 348 EDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYR 415 (448)
T ss_pred CcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCcc
Confidence 999997 55555555 11223332 35566666644 45788999999998754
No 500
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.51 E-value=8.8e-08 Score=103.28 Aligned_cols=51 Identities=27% Similarity=0.578 Sum_probs=44.9
Q ss_pred ccceeEEEeeeeeeCCCCCCCccccccceeeeCCCEEEEEcCCCCCccccc
Q 001371 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKVSAKLNFQFHSLKQLT 1088 (1091)
Q Consensus 1038 ~~~G~I~f~nVs~~Y~~rp~~~VLk~is~~I~~Ge~valVG~SG~~~~~~~ 1088 (1091)
...|.|+++|++++|+.+...++|+|+||+|++||.+||+||+|||||||-
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl 57 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVV 57 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH
Confidence 457899999999999754333599999999999999999999999999974
Done!